Citrus Sinensis ID: 012007
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 473 | 2.2.26 [Sep-21-2011] | |||||||
| Q61FW2 | 589 | F-box/WD repeat-containin | N/A | no | 0.420 | 0.337 | 0.317 | 2e-19 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | yes | no | 0.625 | 0.193 | 0.251 | 3e-19 | |
| P90648 | 732 | Myosin heavy chain kinase | yes | no | 0.553 | 0.357 | 0.270 | 9e-19 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | no | no | 0.642 | 0.241 | 0.261 | 8e-17 | |
| Q8N136 | 415 | Outer row dynein assembly | yes | no | 0.553 | 0.631 | 0.268 | 2e-16 | |
| Q9VZF4 | 1326 | F-box/WD repeat-containin | yes | no | 0.503 | 0.179 | 0.300 | 5e-16 | |
| Q8MY12 | 780 | Myosin heavy chain kinase | no | no | 0.397 | 0.241 | 0.294 | 7e-16 | |
| Q969H0 | 707 | F-box/WD repeat-containin | no | no | 0.408 | 0.272 | 0.328 | 3e-15 | |
| Q6Q0C0 | 670 | E3 ubiquitin-protein liga | no | no | 0.596 | 0.420 | 0.260 | 3e-15 | |
| P87053 | 605 | F-box/WD repeat-containin | yes | no | 0.414 | 0.323 | 0.289 | 4e-15 |
| >sp|Q61FW2|SEL10_CAEBR F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis briggsae GN=sel-10 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 109/227 (48%), Gaps = 28/227 (12%)
Query: 228 SVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAI-NSVVAG 286
++L+ ++C+ ++ + LL +GS D TLKVW I D + ++N H + S ++
Sbjct: 251 AILRGHEEHVITCMQIHND--LLVTGSDDNTLKVWSIDDGEVKHTLNGHSGGVWTSQISQ 308
Query: 287 FDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG 346
+ +GS D TVKVWR E L L H + V +A+ + V GS D
Sbjct: 309 CGRYIVSGSTDRTVKVWRAE------DGFLLHTLQGHTSTVRCMAMANTTLVT--GSRDC 360
Query: 347 LVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVL 406
+ W+ E L H L+GH+ AV C+ GN+V SG D + +W ++ + CL L
Sbjct: 361 TLRVWDIETGL-HVRTLQGHQAAVRCVQFDGNIVVSGGYDFTVKIW---DAFSGKCLRTL 416
Query: 407 TGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453
GH+ V L E +R V SGSLD S++VW S
Sbjct: 417 IGHSNRVYSLLYESERS-------------IVCSGSLDTSIRVWDFS 450
|
Cell autonomous negative regulator of lin-12/Notch-mediated signaling, with respect to lin-12 activity in cell fate decisions and tumorigenesis. May function as part of an E3 complex to target the intracellular domains of lin-12/Notch proteins for ubiquitin-dependent degradation. Involved in sex determination by promoting female development. Potential regulator of presenilin. May have a role in egg laying. Caenorhabditis briggsae (taxid: 6238) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 155/346 (44%), Gaps = 50/346 (14%)
Query: 129 LAASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIR 186
++ G +L +GSD + +R+W + + ++ V++++ S D + +G D +R
Sbjct: 1040 FSSDGAMLASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIVR 1099
Query: 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA--------- 237
+W +S N + +L + +V+ V N V + S +R +D
Sbjct: 1100 LWDISSGNC-----LYTLQGYTSWVRFLVFSPNGVTLANGSSDQIVRLWDISSKKCLYTL 1154
Query: 238 ------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SL 290
V+ ++ + + L SGS D+T+++W IS KCL + H +NSVV D S
Sbjct: 1155 QGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNPDGST 1214
Query: 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350
+ +GS+D TV++W + CL H + V ++ N + +++ GSSD V
Sbjct: 1215 LASGSSDQTVRLWE-----INSSKCLC-TFQGHTSWVNSVVFNPDGSMLASGSSDKTVRL 1268
Query: 351 WEC-EKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLT 407
W+ H +GH V + G+++ SGS D+ + LW E + CL
Sbjct: 1269 WDISSSKCLH--TFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLW---EISSSKCLHTFQ 1323
Query: 408 GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453
GHT V + D + SGS D++V++W +S
Sbjct: 1324 GHTSWVSSVTFSPDGT-------------MLASGSDDQTVRLWSIS 1356
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|P90648|MHCKB_DICDI Myosin heavy chain kinase B OS=Dictyostelium discoideum GN=mhkB PE=2 SV=1 | Back alignment and function description |
|---|
Score = 95.1 bits (235), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 90/333 (27%), Positives = 145/333 (43%), Gaps = 71/333 (21%)
Query: 125 HIYS-LAASGDLLYTGSDSKNIRVW----KNLKEFSGFKSNSGLVKAIIISGDSNKIFTG 179
H+ S L +LL+TG +IRV+ +N++ K + G V++I + +F+G
Sbjct: 461 HVTSHLCICDNLLFTGCSDNSIRVYDYKSQNMECVQTLKGHEGPVESICY--NDQYLFSG 518
Query: 180 HQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA-V 238
D I++W ++++ R + + +D V
Sbjct: 519 SSDHSIKVW---------------------------------DLKKLRCIFTLEGHDKPV 545
Query: 239 SCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV-VAGFDSLVFTGSAD 297
+ LN + L+SGS DKT+KVW + +C ++ +H A+ ++ ++G +F+GS D
Sbjct: 546 HTVLLNDK--YLFSGSSDKTIKVWDLKTLECKYTLESHARAVKTLCISG--QYLFSGSND 601
Query: 298 GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHL 357
T+KVW + T C L H VT + + + +Y GS D + W K L
Sbjct: 602 KTIKVWDLK-----TFRC-NYTLKGHTKWVTTICILGTN--LYSGSYDKTIRVWNL-KSL 652
Query: 358 SHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLA 417
LRGH V + L+F+ S D I +W E C L GH V+CLA
Sbjct: 653 ECSATLRGHDRWVEHMVICDKLLFTASDDNTIKIWDLE---TLRCNTTLEGHNATVQCLA 709
Query: 418 VEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVW 450
V ED+ V S S D+S++VW
Sbjct: 710 VWEDKK-------------CVISCSHDQSIRVW 729
|
Phosphorylates threonine in the C-terminal tail region of myosin II heavy chain. This phosphorylation is critical in regulating the assembly and disassembly of myosin II filament. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 7 |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 153/344 (44%), Gaps = 40/344 (11%)
Query: 124 GHIYSLAAS--GDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSNKIFTG 179
G+I S A S G LL T ++RVW K+ K + +S V+ ++ S D + +
Sbjct: 643 GNILSAAFSPEGQLLATCDTDCHVRVWEVKSGKLLLICRGHSNWVRFVVFSPDGEILASC 702
Query: 180 HQDGKIRIWKVSR----KNASVHKR----VGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231
D +++W V K + H+ V P + +S + + ++ + L+
Sbjct: 703 GADENVKLWSVRDGVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQ 762
Query: 232 IR--HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS 289
H D V C++ + + L S + D T+K+W +S KCL ++ +H + SV D
Sbjct: 763 TLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADG 822
Query: 290 LVF-TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLV 348
+GS D T+K+W T CL + + H N+V ++A + +S ++ GS D +
Sbjct: 823 QTLASGSGDRTIKIWNYH-----TGECL-KTYIGHTNSVYSIAYSPDSKILVSGSGDRTI 876
Query: 349 NFWECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHSCLAVL 406
W+C+ H+ L GH V +A + G + S D+++ LW CL
Sbjct: 877 KLWDCQTHICI-KTLHGHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTG---QCLKAW 932
Query: 407 TGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVW 450
G+T +A DR + SGS DK+VK+W
Sbjct: 933 YGNTDWALPVAFSPDRQ-------------ILASGSNDKTVKLW 963
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8N136|WDR69_HUMAN Outer row dynein assembly protein 16 homolog OS=Homo sapiens GN=WDR69 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 135/294 (45%), Gaps = 32/294 (10%)
Query: 123 EGH---IYSLAAS---GDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSN 174
EGH +Y++A + GD + TGS K ++W + K + F+ ++ + + + S
Sbjct: 131 EGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQST 190
Query: 175 KIFTGHQDGKIRIWKVSRKNASVHKRVG--------SLPTFKDYVKSSVNPKNYV----E 222
+ TG D ++W + + V+ G S T D + + V +
Sbjct: 191 LVATGSMDTTAKLWDI-QNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDAD 249
Query: 223 VRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAI-N 281
R ++L I H +S S N + L+ +GS DKT K+W ++ KC+ ++ HDD I +
Sbjct: 250 TGRKVNIL-IGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILD 308
Query: 282 SVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC 341
S L+ T SADGT +++ T+ C+A+ L HE ++ ++ N + +
Sbjct: 309 SCFDYTGKLIATASADGTARIF-----SAATRKCIAK-LEGHEGEISKISFNPQGNHLLT 362
Query: 342 GSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWR 393
GSSD W+ + VL GH + A GN+V +GS D +WR
Sbjct: 363 GSSDKTARIWDAQTGQCL-QVLEGHTDEIFSCAFNYKGNIVITGSKDNTCRIWR 415
|
May play a role in axonemal outer row dynein assembly. Homo sapiens (taxid: 9606) |
| >sp|Q9VZF4|FBXW7_DROME F-box/WD repeat-containing protein 7 OS=Drosophila melanogaster GN=ago PE=1 SV=1 | Back alignment and function description |
|---|
Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 130/276 (47%), Gaps = 38/276 (13%)
Query: 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVR-RNRSVLKIR----HYD-A 237
K +I R + R G++P K++ ++ +E+ R+R V K + H D
Sbjct: 938 KAQILAEPRSDRPKRGRDGNMPPIASPWKAAYMRQHIIEMNWRSRPVRKPKVLKGHDDHV 997
Query: 238 VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAI-NSVVAGFDSLVFTGSA 296
++CL + + + SGS D TLKVW + KCL ++ H + +S ++G +++ +GS
Sbjct: 998 ITCLQFSGNR--IVSGSDDNTLKVWSAVNGKCLRTLVGHTGGVWSSQMSG--NIIISGST 1053
Query: 297 DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH 356
D T+KVW + + C+ L H + V + ++ + V GS D + W+ E+
Sbjct: 1054 DRTLKVWDMD-----SGACV-HTLQGHTSTVRCMHLH--GSKVVSGSRDATLRVWDIEQG 1105
Query: 357 LSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCL 416
S VL GH AV C+ G L+ SG+ D + +W E CL L GHT V L
Sbjct: 1106 -SCLHVLVGHLAAVRCVQYDGKLIVSGAYDYMVKIWHPER---QECLHTLQGHTNRVYSL 1161
Query: 417 AVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452
D H V SGSLD S++VW V
Sbjct: 1162 QF----DGLH-----------VVSGSLDTSIRVWDV 1182
|
Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins (By similarity). Involved in the degradation of cyclin E and dm/Myc. Required for endocycles, but not mitosis in follicle cell epithelium. Drosophila melanogaster (taxid: 7227) |
| >sp|Q8MY12|MHCKC_DICDI Myosin heavy chain kinase C OS=Dictyostelium discoideum GN=mhkC PE=1 SV=1 | Back alignment and function description |
|---|
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 104/231 (45%), Gaps = 43/231 (18%)
Query: 232 IRHYDAVSCLS---LNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV--AG 286
I++ D V L + + LYSGS D + VW + K + +I AH +I +V+ G
Sbjct: 503 IKNIDTVRGLQSECITGDSLRLYSGSNDGQIGVWDAVELKHVTNIKAHGKSIRAVIKRPG 562
Query: 287 FDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG 346
FD + T AD VK W T+ + ++ K N V + + + ++Y G +D
Sbjct: 563 FDQNILTAGADSLVKEW-----DINTQQTIKEI--KESNEVNTIFI--QDNLLYTGCNDK 613
Query: 347 LVNFW-----ECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHS 401
V W EC K LS GH A+ + A GNL+FSGS D+ I +W +
Sbjct: 614 TVKVWDMRSYECVKTLS------GHTRAIKSVCAMGNLLFSGSNDQQIYVWNL---ATGT 664
Query: 402 CLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452
L GH G VK L + +YSGS D+++++W +
Sbjct: 665 ILTNFQGHEGWVKTLYAHNN---------------MLYSGSHDETIRIWDL 700
|
Phosphorylates threonine at 'Thr-1823', 'Thr-1833' and 'Thr-2029' in the C-terminal tail region of myosin II heavy chain (mhcA) (By similarity). This phosphorylation is critical in actin-activated ATPase activity of the myosin and regulating the assembly and disassembly of myosin II filament. In vitro, catalytic domain phosphorylates mhcA, myelin basic protein, myosin regulatory light chain, casein and caldesmon. Drives the disassembly of myosin II filaments for efficient cytokinesis and recycling of myosin II that occurs during late cytokinesis. Can be activated in vitro by autophosphorylation. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 7 |
| >sp|Q969H0|FBXW7_HUMAN F-box/WD repeat-containing protein 7 OS=Homo sapiens GN=FBXW7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 102/225 (45%), Gaps = 32/225 (14%)
Query: 229 VLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD 288
VLK ++CL + + SGS D TLKVW KCL ++ H + S D
Sbjct: 375 VLKGHDDHVITCLQFCGNR--IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM-RD 431
Query: 289 SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLV 348
+++ +GS D T+KVW E T C+ L H + V + ++++ V GS D +
Sbjct: 432 NIIISGSTDRTLKVWNAE-----TGECI-HTLYGHTSTVRCMHLHEKRVV--SGSRDATL 483
Query: 349 NFWECEK-HLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLT 407
W+ E H VL GH AV C+ G V SG+ D + +W E +CL L
Sbjct: 484 RVWDIETGQCLH--VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE---TETCLHTLQ 538
Query: 408 GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452
GHT V L D H V SGSLD S++VW V
Sbjct: 539 GHTNRVYSLQF----DGIH-----------VVSGSLDTSIRVWDV 568
|
Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins. Involved in the degradation of cyclin-E, MYC, NOTCH1 released notch intracellular domain (NICD), and probably PSEN1. Homo sapiens (taxid: 9606) |
| >sp|Q6Q0C0|TRAF7_HUMAN E3 ubiquitin-protein ligase TRAF7 OS=Homo sapiens GN=TRAF7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 95/364 (26%), Positives = 156/364 (42%), Gaps = 82/364 (22%)
Query: 98 IMPPYSPNENLLSSCNGLIGSIVRKEGHIYSLA--ASGDLLYTGSDSKNIRVWKNLKEFS 155
I+ Y P + + C G + V +G ++ L + GDLL++GS K I+VW +
Sbjct: 376 ILGSYDPQQ--IFKCKG---TFVGHQGPVWCLCVYSMGDLLFSGSSDKTIKVWDTCTTYK 430
Query: 156 GFKS---NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVK 212
K+ + G+V A+ I G K+++G D I +W
Sbjct: 431 CQKTLEGHDGIVLALCIQG--CKLYSGSADCTIIVW------------------------ 464
Query: 213 SSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI--SDCKCL 270
+++ + V IR +D C +L + +L+SGS K +KVW I ++ K
Sbjct: 465 ---------DIQNLQKVNTIRAHDNPVC-TLVSSHNVLFSGSL-KAIKVWDIVGTELKLK 513
Query: 271 ESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTAL 330
+ + + + ++VA S +++GS T+K+W T C+ VL +V ++
Sbjct: 514 KELTGLNHWVRALVAA-QSYLYSGSYQ-TIKIWDIR-----TLDCI-HVLQTSGGSVYSI 565
Query: 331 AVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAG----NLVFSGSAD 386
AV V CG+ + L++ W+ E L GH V LA VFS S D
Sbjct: 566 AVTNHHIV--CGTYENLIHVWDIESK-EQVRTLTGHVGTVYALAVISTPDQTKVFSASYD 622
Query: 387 RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKS 446
R++ +W + C L H G V LAV R ++SG++D +
Sbjct: 623 RSLRVWSMDN---MICTQTLLRHQGSVTALAVSRGR---------------LFSGAVDST 664
Query: 447 VKVW 450
VKVW
Sbjct: 665 VKVW 668
|
E3 ubiquitin ligase capable of auto-ubiquitination, following phosphorylation by MAP3K3. Potentiates MEKK3-mediated activation of the NF-kappa-B, JUN/AP1 and DDIT3 transcriptional regulators. Induces apoptosis when overexpressed. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|P87053|POF1_SCHPO F-box/WD repeat-containing protein pof1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pof1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 111/235 (47%), Gaps = 39/235 (16%)
Query: 225 RNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284
R R V+ H D V CL L + +L SGS+D T+++W ++ + + + H + +
Sbjct: 263 RCRQVVLSGHSDGVMCLQL--VRNILASGSYDATIRLWNLATFQQVALLEGHSSGVTCL- 319
Query: 285 AGFDSL-VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS 343
FD + +GS D T+++W T C++ +L H ++V L +S ++ GS
Sbjct: 320 -QFDQCKLISGSMDKTIRIWNYR-----TSECIS-ILHGHTDSVLCLTF--DSTLLVSGS 370
Query: 344 SDGLVNFWECEKHLSHGG--VLRGHKMAV--LCLAAAGNLVFSGSADRNICLWRREESGA 399
+D V W H S G LRGH V + + LV SGS D I +W E
Sbjct: 371 ADCTVKLW----HFSGGKRITLRGHTGPVNSVRIIRDRGLVLSGSDDSTIKIWSLE---T 423
Query: 400 HSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454
++CL + H GPV+ LA+ + R ++S SLD ++K W + +
Sbjct: 424 NTCLHTFSAHIGPVQSLALADSR---------------LFSCSLDGTIKQWDIEK 463
|
Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Required for the inactivation of zip1 via ubiquitination. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 473 | ||||||
| 255556177 | 448 | F-box and wd40 domain protein, putative | 0.911 | 0.962 | 0.722 | 0.0 | |
| 224103489 | 424 | predicted protein [Populus trichocarpa] | 0.883 | 0.985 | 0.747 | 0.0 | |
| 224123228 | 417 | predicted protein [Populus trichocarpa] | 0.881 | 1.0 | 0.715 | 1e-175 | |
| 449438707 | 467 | PREDICTED: uncharacterized WD repeat-con | 0.926 | 0.937 | 0.658 | 1e-172 | |
| 225428610 | 445 | PREDICTED: vegetative incompatibility pr | 0.909 | 0.966 | 0.659 | 1e-170 | |
| 147794784 | 511 | hypothetical protein VITISV_002364 [Viti | 0.868 | 0.804 | 0.651 | 1e-159 | |
| 225468903 | 451 | PREDICTED: uncharacterized WD repeat-con | 0.864 | 0.906 | 0.653 | 1e-159 | |
| 255538504 | 470 | F-box and wd40 domain protein, putative | 0.915 | 0.921 | 0.649 | 1e-159 | |
| 15230244 | 473 | transducin/WD40 domain-containing protei | 0.923 | 0.923 | 0.615 | 1e-158 | |
| 224136642 | 448 | predicted protein [Populus trichocarpa] | 0.873 | 0.921 | 0.645 | 1e-153 |
| >gi|255556177|ref|XP_002519123.1| F-box and wd40 domain protein, putative [Ricinus communis] gi|223541786|gb|EEF43334.1| F-box and wd40 domain protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/450 (72%), Positives = 369/450 (82%), Gaps = 19/450 (4%)
Query: 9 IVVKPNNNLHRPKFGSFLYPESVIFSPRNNNNQDDGDYYSGHRKSSASSTSPRYNNNSGT 68
+V + +L+RPKFG+ L+ E IF + + N G S SPRY+N+S T
Sbjct: 11 VVAERKGSLNRPKFGALLHAEPAIFPKQEDENSSPG-----------SLASPRYSNSS-T 58
Query: 69 RTPTSGEASPYLMSPWNNQPVSPYTKSPWIMPPYSPNENLLSSCNGLIGSIVRKEGHIYS 128
T GE SPYLMSP +QP SPYTKSPW++P N NL S +GL+GSIVR+EGH+YS
Sbjct: 59 ATSGEGEGSPYLMSPSWSQP-SPYTKSPWLIPSPIVNHNL--SNHGLVGSIVREEGHVYS 115
Query: 129 LAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIW 188
LAASG+LLYTGSDSKNIRVW+N+KEFSGFKSNSGLVKAI+I GD +IFTGH+DGKIRIW
Sbjct: 116 LAASGELLYTGSDSKNIRVWRNMKEFSGFKSNSGLVKAIVILGD--RIFTGHRDGKIRIW 173
Query: 189 KVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQG 248
K+S KN SVHKR+G LPTF+DY+ SVNPKNYVEVRR+R+VL+I+H+DAVSCLSLN EQG
Sbjct: 174 KISAKNPSVHKRIGGLPTFRDYITKSVNPKNYVEVRRHRNVLRIKHFDAVSCLSLNQEQG 233
Query: 249 LLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQ 308
LLYSGSWDKTLK+WRISD KCLESINAH+DAINSV GFDSLVFTGSADGTVK+W+RELQ
Sbjct: 234 LLYSGSWDKTLKIWRISDYKCLESINAHEDAINSVAVGFDSLVFTGSADGTVKIWKRELQ 293
Query: 309 GKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKM 368
G+GTKH L Q LLK ENAVTALAVN ESAVVYCGSSDGLVNFWE +KHLSHGGVLRGHKM
Sbjct: 294 GRGTKHFLVQTLLKQENAVTALAVNLESAVVYCGSSDGLVNFWERKKHLSHGGVLRGHKM 353
Query: 369 AVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDR--DHDH 426
AVLCLA AGNLV SGSAD++IC+WRRE G H CL+VLTGH GPVKCLAV ED DHD
Sbjct: 354 AVLCLATAGNLVLSGSADKSICVWRREPGGIHICLSVLTGHGGPVKCLAVGEDHESDHDP 413
Query: 427 EYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456
+GD RW VYSGSLDKSVKVWRVSE+A
Sbjct: 414 RGSDRGDHRWIVYSGSLDKSVKVWRVSENA 443
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224103489|ref|XP_002313076.1| predicted protein [Populus trichocarpa] gi|222849484|gb|EEE87031.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/439 (74%), Positives = 368/439 (83%), Gaps = 21/439 (4%)
Query: 16 NLHRPKFGSFLYPESVIFSPRNNNNQDDGDYYSGHRKSSASSTSPRYNNNSGTRTPTSGE 75
++HRP FGS L+ + FS NQ++ D S ++S+ SPRY N S TP SGE
Sbjct: 6 SIHRPTFGSLLHSDPAFFS-----NQEEVDDSSNKNSPTSSNMSPRYYNGS---TPPSGE 57
Query: 76 ASPYLMSPWNNQPVSPYTKSPWIMPPYSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDL 135
SPYL SPWN QP SPYTKSPW++P SP + S NGL+GS+ R+EGH+YSLAASGDL
Sbjct: 58 GSPYL-SPWN-QP-SPYTKSPWVIP--SPVNHSFSK-NGLVGSLAREEGHVYSLAASGDL 111
Query: 136 LYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNA 195
L+TGSDSKNIRVW NLKEF+GFKSNSGLVKAI+I GD KIFTGHQDGKIR+W+ S +N
Sbjct: 112 LFTGSDSKNIRVWNNLKEFAGFKSNSGLVKAIVIHGD--KIFTGHQDGKIRVWRASSRNP 169
Query: 196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW 255
S +KRVG++PT KDYVKSSVNPKNYVEVRR+R+VL+I+H+DAVSCLSLN +QGLLYSGSW
Sbjct: 170 SAYKRVGTVPTLKDYVKSSVNPKNYVEVRRHRNVLRIKHFDAVSCLSLNEDQGLLYSGSW 229
Query: 256 DKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHC 315
DKTLKVWR SD KCLESINAHDDAINSVV GFDSLVFTGSADGTVKVWRRELQG+ T H
Sbjct: 230 DKTLKVWRTSDYKCLESINAHDDAINSVVTGFDSLVFTGSADGTVKVWRRELQGRRTGHF 289
Query: 316 LAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA 375
L Q LLKHENAVTAL+VNQESAV+YCGSSDGLVNFWE EKHLSHGGVLRGHKMAVLCLA+
Sbjct: 290 LVQTLLKHENAVTALSVNQESAVIYCGSSDGLVNFWEREKHLSHGGVLRGHKMAVLCLAS 349
Query: 376 AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQR 435
AGNLVFSGSAD++IC+WRRE G H CL+VLTGH GPVKCLAVEEDR+ D KGDQ
Sbjct: 350 AGNLVFSGSADKSICVWRREAGGVHICLSVLTGHGGPVKCLAVEEDRESD-----KGDQH 404
Query: 436 WTVYSGSLDKSVKVWRVSE 454
W VYSGSLDKSVKVWRVSE
Sbjct: 405 WIVYSGSLDKSVKVWRVSE 423
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224123228|ref|XP_002330264.1| predicted protein [Populus trichocarpa] gi|222871299|gb|EEF08430.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust.
Identities = 315/440 (71%), Positives = 367/440 (83%), Gaps = 23/440 (5%)
Query: 16 NLHRPKFGSFLYPESVIFSPRNNNNQDDGDYYSGHRKSSASSTSPRYNNNSGTRTPTSGE 75
++ RP FG+ L+ + IF NQDD D S ++++ SPRY + + TP SG+
Sbjct: 1 SIQRPTFGALLHSDPAIF------NQDD-DESSNKNSPTSTNMSPRYYS---SFTPPSGD 50
Query: 76 ASPYLMSPWNNQPVSPYTKSPWIMPPYSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDL 135
SPYL SPW+ +SPYTKSPWI+P SP + LS NGL+GSI R+EGH+YS+AASGD
Sbjct: 51 LSPYL-SPWSQ--LSPYTKSPWIIP--SPISHKLSK-NGLVGSISREEGHVYSIAASGDF 104
Query: 136 LYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNA 195
LYTGSDSKN+RVWKNLKEFSGFKSNSGLVKAI++ G+ KIFT HQDGKIR+W +S +N
Sbjct: 105 LYTGSDSKNVRVWKNLKEFSGFKSNSGLVKAIVVCGE--KIFTCHQDGKIRVWTISTRNP 162
Query: 196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW 255
SV++RVG+LPT KD VK S+NPKNYVEVRR+R+VL+I+H+DAVSCLSLN +QGLLYSGSW
Sbjct: 163 SVYRRVGTLPTLKDCVKGSLNPKNYVEVRRHRNVLRIKHFDAVSCLSLNQDQGLLYSGSW 222
Query: 256 DKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHC 315
DKTLKVWR+SD KCLESINAHDDAINSVV GFDSLVFTGSADGTVK WRRELQG+GT+H
Sbjct: 223 DKTLKVWRVSDYKCLESINAHDDAINSVVTGFDSLVFTGSADGTVKAWRRELQGRGTRHF 282
Query: 316 LAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA 375
L Q LLKHENAVTAL+VNQESAV+YCGSSDGLVNFWE EK LSHGGVLRGHKMAVLCLA+
Sbjct: 283 LVQTLLKHENAVTALSVNQESAVIYCGSSDGLVNFWEREKLLSHGGVLRGHKMAVLCLAS 342
Query: 376 AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQR 435
AGNLVFSGSAD++IC+WRRE G H+CLAVLTGH GPVKCLAV ED++ D +GDQR
Sbjct: 343 AGNLVFSGSADKSICVWRREGGGVHTCLAVLTGHGGPVKCLAVVEDQESD-----EGDQR 397
Query: 436 WTVYSGSLDKSVKVWRVSEH 455
W VYSGSLDKSVKVW V+E+
Sbjct: 398 WIVYSGSLDKSVKVWCVTEN 417
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438707|ref|XP_004137129.1| PREDICTED: uncharacterized WD repeat-containing protein alr3466-like [Cucumis sativus] gi|449523844|ref|XP_004168933.1| PREDICTED: uncharacterized WD repeat-containing protein alr3466-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust.
Identities = 307/466 (65%), Positives = 376/466 (80%), Gaps = 28/466 (6%)
Query: 9 IVVKPNNN--LHRPKFGSFLYPESVIFSPRNNNNQDDGDYYSGHRKSSASSTSPRYNNNS 66
+V++P NN LHR +FG++L + IF+ DD D+ H +SA+ TSP YN +
Sbjct: 1 MVMEPRNNHGLHRKRFGAYLQSDPAIFA------GDDNDFSPRHSNASAA-TSPVYNYD- 52
Query: 67 GTRTPTSGEASPYLMSPWNNQPVSPYTKSPWIMPP-YSPNENLLSSCNGLIGSIVRKEGH 125
++P SG+ASPYLMSPWN Q SPY+KSPW + + ++ + +GLIGS+VR+EGH
Sbjct: 53 --KSPASGDASPYLMSPWN-QSTSPYSKSPWTLRSGMNLYDDEFYAQSGLIGSLVREEGH 109
Query: 126 IYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKI 185
+YSLA +GDLLYTGSDSKNIRVWKNLKE++GFKSNSGLVK+II+ GD +IFTGHQDGKI
Sbjct: 110 VYSLAVAGDLLYTGSDSKNIRVWKNLKEYTGFKSNSGLVKSIILCGD--RIFTGHQDGKI 167
Query: 186 RIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA 245
RIWKVS KN H R+GSLPT K++VKSS+NPKNYV+VRRNR+VL+I+H+DA+S +SLN
Sbjct: 168 RIWKVSSKNPKSHSRIGSLPTLKEFVKSSMNPKNYVKVRRNRNVLRIKHFDAISSMSLNE 227
Query: 246 EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRR 305
E GLLYSGSWDKT+KVWRI+D KCLESI AHDDA+N+V +G +SLVFTGSADGTVKVWRR
Sbjct: 228 ELGLLYSGSWDKTMKVWRIADSKCLESITAHDDAVNAVASGLESLVFTGSADGTVKVWRR 287
Query: 306 ELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRG 365
ELQGKGTKH L QVLLK E A+TAL VN+ SAV+YCGSS+G+VN+WE EKHLSHGGVLRG
Sbjct: 288 ELQGKGTKHFLVQVLLKQETAITALVVNKSSAVLYCGSSEGVVNYWESEKHLSHGGVLRG 347
Query: 366 HKMAVLCLAAAGNLVFSGSADRNICLWRREE-SGAHSCLAVLTGHTGPVKCLAVEEDRDH 424
HK+AVLCLA AGNLVFSGSAD+NIC+WRREE +G+H+CL+VLTGH+GPVKCLAV+ED +
Sbjct: 348 HKLAVLCLATAGNLVFSGSADKNICVWRREENTGSHTCLSVLTGHSGPVKCLAVKEDEEE 407
Query: 425 DHE-----------YHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDL 459
Y +RW VYSGSLD+SVKVWRV+E+AP+L
Sbjct: 408 SASSPEEESEVKKVYGSYKKRRWIVYSGSLDRSVKVWRVAENAPEL 453
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428610|ref|XP_002281238.1| PREDICTED: vegetative incompatibility protein HET-E-1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust.
Identities = 310/470 (65%), Positives = 363/470 (77%), Gaps = 40/470 (8%)
Query: 1 MTNEGGGAIVVKPNNNLHRPKFGSFLYPESVIFSPRNNNNQDDGDYYSGHRKSSASSTSP 60
M NE GG +V+ N L RPK + L + P+N+ + + R+S+ S S
Sbjct: 1 MRNERGG-VVLAERNVLPRPKLSAILRSD-----PKNDEEEMN-------RRSNVSMDS- 46
Query: 61 RYNNNSGTRTPTSGEASPYLMSPWNNQPVSPYTKSPWIM---PPYSPNENLLSSCNGLIG 117
+ P+SGE SP +MSPWN+ P SP+ KSPW P P NGLIG
Sbjct: 47 -------SVPPSSGENSPLVMSPWNH-PSSPFAKSPWTKSSSPMGLPQ-------NGLIG 91
Query: 118 SIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIF 177
S+VR+EGH+YSLAA+G+LLYTGSDSKNIRVWKNLK +SGFKSNSGLVKAI+ISG+ KIF
Sbjct: 92 SMVREEGHVYSLAATGNLLYTGSDSKNIRVWKNLKAYSGFKSNSGLVKAIVISGE--KIF 149
Query: 178 TGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA 237
TGHQDGKIR+W+VS KN +HKR+GSLPTFKD++KSS+NPKNYV+VRR RSVL+I+H+DA
Sbjct: 150 TGHQDGKIRVWRVSPKNPKLHKRIGSLPTFKDFLKSSINPKNYVKVRRKRSVLRIKHFDA 209
Query: 238 VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSAD 297
VSCLSL+ +QGLLYSGSWDKTLKVWRISD KCLESI AHDDAIN+VVAGF LVFTGSAD
Sbjct: 210 VSCLSLDQDQGLLYSGSWDKTLKVWRISDSKCLESIRAHDDAINAVVAGFAGLVFTGSAD 269
Query: 298 GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHL 357
GTVKVW R+L GKGTKH Q LL E A+T+LAVN E A++YCGSSDGLVNFWE EKHL
Sbjct: 270 GTVKVWHRQLHGKGTKHLFLQTLLNQETAITSLAVNTEGAIIYCGSSDGLVNFWEREKHL 329
Query: 358 SHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLA 417
HGGVLRGHK AVLCLA AGNLVFSGSAD++IC+WRR E G H+CL+VLTGHTGPVKCLA
Sbjct: 330 KHGGVLRGHKHAVLCLATAGNLVFSGSADKSICVWRR-EGGIHTCLSVLTGHTGPVKCLA 388
Query: 418 VEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGLHSPTQ 467
VEED++ K DQRW VYSGSLDKSVK+WRVSE APD++ + Q
Sbjct: 389 VEEDQE-----STKRDQRWIVYSGSLDKSVKIWRVSEQAPDIQQMRLMAQ 433
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147794784|emb|CAN66843.1| hypothetical protein VITISV_002364 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 569 bits (1467), Expect = e-159, Method: Compositional matrix adjust.
Identities = 294/451 (65%), Positives = 349/451 (77%), Gaps = 40/451 (8%)
Query: 10 VVKPNNNLHRPKFGSFLYPESVIFSPRNNNNQDDGDYYSGHRKSSASSTSPRYNNNSGTR 69
+++ +N+L R FG+ ++ + D D+ R S++S+ SP +N
Sbjct: 61 MLEESNSLERQTFGNLMH-----------SAPPDDDF--SFRNSASSAPSPAHN------ 101
Query: 70 TPTSGEASPYLMSPWNNQPVSPYTKSPW---IMPPYSPNENLLSSCNGLIGSIVRKEGHI 126
G+ASPY+ + W SPYTKSPW ++PP + N NGL+GS+VR+EGHI
Sbjct: 102 ----GDASPYIGT-WEGAS-SPYTKSPWSSHVVPPSNGNHY----PNGLMGSLVREEGHI 151
Query: 127 YSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIR 186
YSLA SGDLLYTGSDSKNIRVWKN KEFSGFKSNSGLVKAIIISG+ KIFTGHQDGKIR
Sbjct: 152 YSLATSGDLLYTGSDSKNIRVWKNQKEFSGFKSNSGLVKAIIISGE--KIFTGHQDGKIR 209
Query: 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE 246
+WKVS KN SVHKRVG+LPTF+DY++SS+NP NYVEVRR+R+ L I+H+DA+S LSL+ +
Sbjct: 210 VWKVSAKNPSVHKRVGTLPTFRDYIRSSMNPSNYVEVRRHRNALWIKHFDAISSLSLSED 269
Query: 247 QGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRE 306
+ LYS SWDKT+KVWRISD KCLES+N HDDA+N+VVAGFD LVFTGSADG+VKVWRRE
Sbjct: 270 KKFLYSASWDKTIKVWRISDSKCLESVNVHDDAVNAVVAGFDGLVFTGSADGSVKVWRRE 329
Query: 307 LQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGH 366
LQ KGTKH +Q LLK E AVTALAVN E+ +YCGSSDGLVNFWE EKHLSHGG+LRGH
Sbjct: 330 LQAKGTKHFFSQTLLKQECAVTALAVNPEATFLYCGSSDGLVNFWEREKHLSHGGILRGH 389
Query: 367 KMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDH 426
K+AVLCL AAGNLVFSGSAD IC+WRR E G HSCLAVLTGH GPVKCLA+E+D +
Sbjct: 390 KLAVLCLVAAGNLVFSGSADMGICVWRRLE-GDHSCLAVLTGHNGPVKCLAIEDDIE--- 445
Query: 427 EYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457
D+RW +YSGSLDKSVK+WRVSE AP
Sbjct: 446 --STAADRRWILYSGSLDKSVKMWRVSELAP 474
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225468903|ref|XP_002268809.1| PREDICTED: uncharacterized WD repeat-containing protein alr3466-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 296/453 (65%), Positives = 349/453 (77%), Gaps = 44/453 (9%)
Query: 10 VVKPNNNLHRPKFGSFLY--PESVIFSPRNNNNQDDGDYYSGHRKSSASSTSPRYNNNSG 67
+++ +N+L R FG+ ++ P FS RN S++S+ SP +N
Sbjct: 1 MLEESNSLERQTFGNLMHSAPPDDDFSFRN---------------SASSAPSPAHN---- 41
Query: 68 TRTPTSGEASPYLMSPWNNQPVSPYTKSPW---IMPPYSPNENLLSSCNGLIGSIVRKEG 124
G+ASPY+ + W SPYTKSPW ++PP + N NGL+GS+VR+EG
Sbjct: 42 ------GDASPYIGT-WEGAS-SPYTKSPWSSHVVPPSNGNHY----PNGLMGSLVREEG 89
Query: 125 HIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGK 184
HIYSLA SGDLLYTGSDSKNIRVWKN KEFSGFKSNSGLVKAIIISG+ KIFTGHQDGK
Sbjct: 90 HIYSLATSGDLLYTGSDSKNIRVWKNQKEFSGFKSNSGLVKAIIISGE--KIFTGHQDGK 147
Query: 185 IRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLN 244
IR+WKVS KN SVHKRVG+LPTF+DY++SS+NP NYVEVRR+R+ L I+H+DA+S LSL+
Sbjct: 148 IRVWKVSAKNPSVHKRVGTLPTFRDYIRSSMNPSNYVEVRRHRNALWIKHFDAISSLSLS 207
Query: 245 AEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWR 304
++ LYS SWDKT+KVWRISD KCLES+N HDDA+N+VVAGFD LVFTGSADG+VKVWR
Sbjct: 208 EDKKFLYSASWDKTIKVWRISDSKCLESVNVHDDAVNAVVAGFDGLVFTGSADGSVKVWR 267
Query: 305 RELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLR 364
RELQ KGTKH +Q LLK E AVTALAVN E+ +YCGSSDGLVNFWE EKHLSHGG+LR
Sbjct: 268 RELQAKGTKHFFSQTLLKQECAVTALAVNPEATFLYCGSSDGLVNFWEREKHLSHGGILR 327
Query: 365 GHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDH 424
GHK+AVLCL AAGNLVFSGSAD IC+WRR E G HSCLAVLTGH GPVKCLA+E+D +
Sbjct: 328 GHKLAVLCLVAAGNLVFSGSADMGICVWRRLE-GDHSCLAVLTGHNGPVKCLAIEDDIE- 385
Query: 425 DHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457
D+RW +YSGSLDKSVK+WRVSE AP
Sbjct: 386 ----STAADRRWILYSGSLDKSVKMWRVSELAP 414
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255538504|ref|XP_002510317.1| F-box and wd40 domain protein, putative [Ricinus communis] gi|223551018|gb|EEF52504.1| F-box and wd40 domain protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 300/462 (64%), Positives = 351/462 (75%), Gaps = 29/462 (6%)
Query: 1 MTNEGGG---AIVVKPNNNLHRPKFGSFLYPESVIFSPRNNNNQDDGDYYSGHRKSSASS 57
M ++GG V +N + R KFG+ ++ + P ++ +D D+ R SSAS+
Sbjct: 1 MRDDGGADCTKFVDTGSNTIPRSKFGNIMHSD-----PNMSSTVNDEDF--SIRNSSASA 53
Query: 58 TSPRYNNNSGTRTPTSGEASPYLMSPWNNQPVSPYTKSPWIMPPYSPNENLLSSCNGLIG 117
+P + + + S E SP MSPWNN SP+TKSPW + EN+ NGLIG
Sbjct: 54 VTPGFFDPN----RLSCEGSPMTMSPWNN--TSPFTKSPWA----NFEENIPQ--NGLIG 101
Query: 118 SIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIF 177
S+VR+EGHIYSLAA DLLYTGSDSKNIRVWKNLKEFSGFKS+SGLVKAIIISG+ KIF
Sbjct: 102 SLVREEGHIYSLAAKKDLLYTGSDSKNIRVWKNLKEFSGFKSSSGLVKAIIISGE--KIF 159
Query: 178 TGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA 237
TGHQDGKIR+WKVS KN SVHKR G+LPT KD KSS+ P NYV+VR +RS L I+H DA
Sbjct: 160 TGHQDGKIRVWKVSPKNLSVHKRSGTLPTLKDIFKSSIKPSNYVQVRNHRSALWIKHSDA 219
Query: 238 VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSAD 297
VSCLS N +Q LLYS SWD+T KVWRISD KCLESI+AHDDA+NSVVA + +VFTGSAD
Sbjct: 220 VSCLSFNEDQTLLYSASWDRTFKVWRISDSKCLESISAHDDAVNSVVATTEGMVFTGSAD 279
Query: 298 GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHL 357
GTVKVW+RE GK TKH + Q LLK E AVTALAVN +V+YCGSSDG+VN+WE EK L
Sbjct: 280 GTVKVWKREQPGKTTKHNMVQTLLKQECAVTALAVNTSGSVLYCGSSDGVVNYWEREKQL 339
Query: 358 SHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLA 417
SHGGVL+GHK+AVLCLAAAGNLVFSGSAD+ IC+WRR + H+CL+VLTGHTGPVKCLA
Sbjct: 340 SHGGVLKGHKLAVLCLAAAGNLVFSGSADKTICVWRR-DGNIHTCLSVLTGHTGPVKCLA 398
Query: 418 VEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDL 459
VEEDR E + GDQRW VYSGSLDKSVKVW VSE APD+
Sbjct: 399 VEEDR----EQSKPGDQRWVVYSGSLDKSVKVWSVSELAPDV 436
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15230244|ref|NP_188525.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|9280312|dbj|BAB01691.1| En/Spm-like transposon protein-like [Arabidopsis thaliana] gi|26450378|dbj|BAC42304.1| unknown protein [Arabidopsis thaliana] gi|28973059|gb|AAO63854.1| unknown protein [Arabidopsis thaliana] gi|332642651|gb|AEE76172.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 286/465 (61%), Positives = 342/465 (73%), Gaps = 28/465 (6%)
Query: 19 RPKFGSFLYPESVIFSPRNNNNQDDGDYYSGHRKSSASSTSPRYNNNSGTRTPTSGEASP 78
R F SFL + ++ DD S K+ Y + + TSGE+SP
Sbjct: 15 RLTFASFLNSDPAADEEEQSHGVDDIINPSSSNKNINKDVHHNYRQSQSNASTTSGESSP 74
Query: 79 -YLMSPWN---------------------NQPVSPYTKSPWIMPPYSPNENLLSSCNGLI 116
++SPWN NQ SPY KSPWI + +++ + NGLI
Sbjct: 75 NQVLSPWNQTYSPYYTDTTNTPSMSPSPWNQTYSPYYKSPWIYQTRNIDDD---TDNGLI 131
Query: 117 GSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKI 176
G+IVR++GH+YSLAASGDLL+TGSDSKNIRVWK+LK+ +GFKS SGLVKAI+I+GD N+I
Sbjct: 132 GTIVRQDGHVYSLAASGDLLFTGSDSKNIRVWKDLKDHTGFKSTSGLVKAIVITGD-NRI 190
Query: 177 FTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYD 236
FTGHQDGKIR+W+ S++ + R+GSLPT K+++ SVNPKNYVEVRR ++VLKIRHYD
Sbjct: 191 FTGHQDGKIRVWRGSKRRTGGYSRIGSLPTLKEFLTKSVNPKNYVEVRRRKNVLKIRHYD 250
Query: 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSA 296
AVSCLSLN E GLLYSGSWDKTLKVWR+SD KCLESI AHDDAIN+V AGFD L+FTGSA
Sbjct: 251 AVSCLSLNEELGLLYSGSWDKTLKVWRLSDSKCLESIQAHDDAINTVAAGFDDLLFTGSA 310
Query: 297 DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH 356
DGT+KVW+RELQGKGTKH L VL+K ENAVTALAVN +AVVYCGSSDG VNFWE +K+
Sbjct: 311 DGTLKVWKRELQGKGTKHFLVNVLMKQENAVTALAVNITAAVVYCGSSDGTVNFWEGQKY 370
Query: 357 LSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCL 416
LSHGG LRGH++AVLCLAAAG+LV SG AD+NIC+WRR G+HSCL+VL H GPVKCL
Sbjct: 371 LSHGGTLRGHRLAVLCLAAAGSLVLSGGADKNICVWRRNGDGSHSCLSVLMDHVGPVKCL 430
Query: 417 AVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKG 461
ED H +KGDQ+W VYSGSLDKSVKVWRV+E A + G
Sbjct: 431 TAVEDDGEGHR--EKGDQKWIVYSGSLDKSVKVWRVTESASTVIG 473
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224136642|ref|XP_002326910.1| predicted protein [Populus trichocarpa] gi|222835225|gb|EEE73660.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 290/449 (64%), Positives = 337/449 (75%), Gaps = 36/449 (8%)
Query: 16 NLHRPKFGSFLYPE-----SVIFSPRNNNNQDDGDYYSGHRKSSASSTSP-RYNNNSGTR 69
++ R KFG+ ++ + +V PR D +R SSAS TSP Y+ N
Sbjct: 1 SIPRSKFGNSVHSDPNLSATVAAIPR--------DEVFAYRNSSASFTSPASYDPNR--- 49
Query: 70 TPTSGEASPYLMSPWNNQPVSPYTKSPWIMPPYSPNENLLSSCNGLIGSIVRKEGHIYSL 129
S E SP MSPWN P+S ENL NGLIGS+VR+EGHIYSL
Sbjct: 50 --MSCEGSPMTMSPWNQTGAGSNF-------PWSIEENLPQ--NGLIGSLVREEGHIYSL 98
Query: 130 AASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWK 189
AA+ DLLYTGSDSKNIRVWKNLKEFSGFKS+SGLVKAIII+G+ KIFTGHQDGKIR+WK
Sbjct: 99 AATKDLLYTGSDSKNIRVWKNLKEFSGFKSSSGLVKAIIIAGE--KIFTGHQDGKIRVWK 156
Query: 190 VSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGL 249
V KN +VHKR G+LPT K+ KSS+ P YV+VR NRS L I+H DA+SCL+LN ++ L
Sbjct: 157 VIPKNPTVHKRSGTLPTLKEVFKSSIRPSAYVQVR-NRSALWIKHSDAISCLTLNEDRTL 215
Query: 250 LYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQG 309
LYS SWD+T KVWRISD KCLESINAHDDA+NSVVA D LVFTGSADGTVKVW+RE QG
Sbjct: 216 LYSASWDRTFKVWRISDSKCLESINAHDDAVNSVVASLDGLVFTGSADGTVKVWKREQQG 275
Query: 310 KGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMA 369
K TKH Q LLK E+AVTALAVN +VVYCGSSDG+VN+WECEK L+HGGVL+GHK+A
Sbjct: 276 KRTKHSPVQTLLKQESAVTALAVNTSGSVVYCGSSDGMVNYWECEKQLTHGGVLKGHKLA 335
Query: 370 VLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYH 429
VLCLA+AGNLVFSGSAD+ IC+WRR++ H+C++VLTGH GPVKCLAVEE DHE
Sbjct: 336 VLCLASAGNLVFSGSADKTICVWRRDDK-IHACMSVLTGHNGPVKCLAVEE----DHEKS 390
Query: 430 QKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458
+ GDQRW VYSGSLDKSVKVW V+E APD
Sbjct: 391 KDGDQRWVVYSGSLDKSVKVWSVAEMAPD 419
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 473 | ||||||
| TAIR|locus:2085929 | 473 | AT3G18950 "AT3G18950" [Arabido | 0.892 | 0.892 | 0.642 | 7.9e-149 | |
| TAIR|locus:2116194 | 495 | AT4G34380 "AT4G34380" [Arabido | 0.959 | 0.917 | 0.618 | 9.3e-146 | |
| TAIR|locus:2010157 | 471 | AT1G49450 "AT1G49450" [Arabido | 0.913 | 0.917 | 0.610 | 3.6e-144 | |
| TAIR|locus:2066276 | 465 | AT2G26490 "AT2G26490" [Arabido | 0.854 | 0.868 | 0.635 | 3.1e-138 | |
| TAIR|locus:2074825 | 469 | AT3G50390 "AT3G50390" [Arabido | 0.809 | 0.816 | 0.608 | 1.1e-128 | |
| TAIR|locus:2015423 | 351 | AT1G47610 "AT1G47610" [Arabido | 0.716 | 0.965 | 0.658 | 1.8e-117 | |
| TAIR|locus:2032452 | 415 | AT1G24130 "AT1G24130" [Arabido | 0.727 | 0.828 | 0.439 | 4.8e-71 | |
| TAIR|locus:2083710 | 415 | AT3G51930 "AT3G51930" [Arabido | 0.665 | 0.759 | 0.452 | 4e-67 | |
| TAIR|locus:2024031 | 418 | AT1G24530 "AT1G24530" [Arabido | 0.619 | 0.700 | 0.439 | 9.7e-64 | |
| TAIR|locus:2170061 | 388 | AT5G50120 "AT5G50120" [Arabido | 0.670 | 0.817 | 0.404 | 4.3e-61 |
| TAIR|locus:2085929 AT3G18950 "AT3G18950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1453 (516.5 bits), Expect = 7.9e-149, P = 7.9e-149
Identities = 284/442 (64%), Positives = 343/442 (77%)
Query: 32 IFSPRNNNNQDDGDYYSGHRKS--SASSTSPRYNNNSGTRTPTSGEASPYLM-------- 81
I +P ++N + D + +R+S +AS+TS + N +P + SPY
Sbjct: 40 IINPSSSNKNINKDVHHNYRQSQSNASTTSGESSPNQ-VLSPWNQTYSPYYTDTTNTPSM 98
Query: 82 --SPWNNQPVSPYTKSPWIMPPYSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDLLYTG 139
SPWN Q SPY KSPWI + +++ + NGLIG+IVR++GH+YSLAASGDLL+TG
Sbjct: 99 SPSPWN-QTYSPYYKSPWIYQTRNIDDD---TDNGLIGTIVRQDGHVYSLAASGDLLFTG 154
Query: 140 SDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHK 199
SDSKNIRVWK+LK+ +GFKS SGLVKAI+I+GD N+IFTGHQDGKIR+W+ S++ +
Sbjct: 155 SDSKNIRVWKDLKDHTGFKSTSGLVKAIVITGD-NRIFTGHQDGKIRVWRGSKRRTGGYS 213
Query: 200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTL 259
R+GSLPT K+++ SVNPKNYVEVRR ++VLKIRHYDAVSCLSLN E GLLYSGSWDKTL
Sbjct: 214 RIGSLPTLKEFLTKSVNPKNYVEVRRRKNVLKIRHYDAVSCLSLNEELGLLYSGSWDKTL 273
Query: 260 KVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQV 319
KVWR+SD KCLESI AHDDAIN+V AGFD L+FTGSADGT+KVW+RELQGKGTKH L V
Sbjct: 274 KVWRLSDSKCLESIQAHDDAINTVAAGFDDLLFTGSADGTLKVWKRELQGKGTKHFLVNV 333
Query: 320 LLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNL 379
L+K ENAVTALAVN +AVVYCGSSDG VNFWE +K+LSHGG LRGH++AVLCLAAAG+L
Sbjct: 334 LMKQENAVTALAVNITAAVVYCGSSDGTVNFWEGQKYLSHGGTLRGHRLAVLCLAAAGSL 393
Query: 380 VFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVY 439
V SG AD+NIC+WRR G+HSCL+VL H GPVKCL ED H +KGDQ+W VY
Sbjct: 394 VLSGGADKNICVWRRNGDGSHSCLSVLMDHVGPVKCLTAVEDDGEGHR--EKGDQKWIVY 451
Query: 440 SGSLDKSVKVWRVSEHAPDLKG 461
SGSLDKSVKVWRV+E A + G
Sbjct: 452 SGSLDKSVKVWRVTESASTVIG 473
|
|
| TAIR|locus:2116194 AT4G34380 "AT4G34380" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1424 (506.3 bits), Expect = 9.3e-146, P = 9.3e-146
Identities = 297/480 (61%), Positives = 351/480 (73%)
Query: 1 MTNEGGGAIVVK----PNNNLHRPKFGSFLYPESVIFSPR--NNNNQDDGDYYSGHRKSS 54
M NE GG +VV P NN+H S+ E P+ N + D + +
Sbjct: 1 MRNETGGTMVVDLQTDPYNNIHSRHNLSYDLSEGPKPRPKFGNISKTDHDEIFPPDDPII 60
Query: 55 ASS--TSPRYNNNSGTRT---PTSGEASPYLMSPWNNQPVSPYTKSPWIMPPYSPNENLL 109
+S T R+++ S + P SGE SP +MSPW VSP PW NE+ +
Sbjct: 61 INSNVTHQRFSSVSASTMSSGPASGEGSPCVMSPWAR--VSP----PW---GADFNEDNV 111
Query: 110 SSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIII 169
NGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKE +GFKS+SGL+KAI+I
Sbjct: 112 LETNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEHAGFKSSSGLIKAIVI 171
Query: 170 SGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSV 229
GD +IFTGHQDGKIRIWKVS++ HKRVG+LPTFK VKSSVNPK+++EVRRNR+
Sbjct: 172 FGD--RIFTGHQDGKIRIWKVSKRKPGKHKRVGTLPTFKSMVKSSVNPKHFMEVRRNRNS 229
Query: 230 LKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS 289
+K +H DAVS LSL+ E GLLYS SWD T+KVWRI+D KCLESI+AHDDAINSV++GFD
Sbjct: 230 VKTKHNDAVSSLSLDVELGLLYSSSWDTTIKVWRIADSKCLESIHAHDDAINSVMSGFDD 289
Query: 290 LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVN 349
LVFTGSADGTVKVW+RELQGKGTKH LAQVLLK ENAVTALAV +S++VYCGSSDGLVN
Sbjct: 290 LVFTGSADGTVKVWKRELQGKGTKHTLAQVLLKQENAVTALAVKSQSSIVYCGSSDGLVN 349
Query: 350 FWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESG-AHSCLAVLTG 408
+WE K GG+L+GHK AVLCL AGNL+ SGSAD+NIC+WRR+ S +H CL+VLTG
Sbjct: 350 YWERSKRSFTGGILKGHKSAVLCLGIAGNLLLSGSADKNICVWRRDPSDKSHQCLSVLTG 409
Query: 409 HTGPVKCLAVEEDRD-HDHEYHQ--KGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGLHSP 465
H GPVKCLAVEE+R H +GD++W +YSGSLDKSVKVWRVSE K + P
Sbjct: 410 HMGPVKCLAVEEERACHQGAKASVAEGDRKWIIYSGSLDKSVKVWRVSERMATWKEMDEP 469
|
|
| TAIR|locus:2010157 AT1G49450 "AT1G49450" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1409 (501.1 bits), Expect = 3.6e-144, P = 3.6e-144
Identities = 276/452 (61%), Positives = 342/452 (75%)
Query: 21 KFGSFLYPESVIFSPRNNNNQD----DGDYYSGHRKSSASS--TSPRYNNNSGTRT--PT 72
K GS E S +++NQ + D SSASS +SP Y + +T P+
Sbjct: 23 KSGSLAAEEETYHSDGDHHNQSTFSSNSDSQRPSNASSASSDSSSPIYPLSPWNQTYYPS 82
Query: 73 SGEASPY---LMSPWNNQPVSPYTKSPWIMPPYSPN-ENLLSSCNGLIGSIVRKEGHIYS 128
+ + + SPWN Q SPY KSPWI + + E+ NGLIG++VR+EGH+YS
Sbjct: 83 NDNTTSFSSVTQSPWN-QTYSPYHKSPWIYQTRNSDFED--DPDNGLIGTVVRQEGHVYS 139
Query: 129 LAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIW 188
LAASGDLL+TGSDSKNIRVWK+LK+FSGFKS SG VKAI+++ D N++FTGHQDGKIR+W
Sbjct: 140 LAASGDLLFTGSDSKNIRVWKDLKDFSGFKSTSGFVKAIVVTRD-NRVFTGHQDGKIRVW 198
Query: 189 KVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQG 248
+ S+KN + RVGSLPT K+++ SVNP+NYVEVRR ++VLKIRH+DAVSCLSLN + G
Sbjct: 199 RGSKKNPEKYSRVGSLPTLKEFLTKSVNPRNYVEVRRRKNVLKIRHFDAVSCLSLNEDLG 258
Query: 249 LLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQ 308
LLYSGSWDKTLKVWR+SD KCLESI AHDDA+N+VV+GFD LVFTGSADGT+KVW+RE+Q
Sbjct: 259 LLYSGSWDKTLKVWRLSDSKCLESIEAHDDAVNTVVSGFDDLVFTGSADGTLKVWKREVQ 318
Query: 309 GKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKM 368
GK KH L QVL+K ENAVTALAVN AVVYCGSSDG VNFWE +K+L+H G + GH+M
Sbjct: 319 GKEMKHVLVQVLMKQENAVTALAVNLTDAVVYCGSSDGTVNFWERQKYLTHKGTIHGHRM 378
Query: 369 AVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDH-- 426
AVLCLA AG+L+ SG AD+NIC+W+R G+H+CL+VL H GPVKCLA E+ + DH
Sbjct: 379 AVLCLATAGSLLLSGGADKNICVWKRNGDGSHTCLSVLMDHEGPVKCLAAVEEAEEDHND 438
Query: 427 --EYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456
+ +KGDQRW VYSGSLD SVKVWRV+++A
Sbjct: 439 GDDGGEKGDQRWIVYSGSLDNSVKVWRVTDYA 470
|
|
| TAIR|locus:2066276 AT2G26490 "AT2G26490" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1353 (481.3 bits), Expect = 3.1e-138, P = 3.1e-138
Identities = 270/425 (63%), Positives = 328/425 (77%)
Query: 49 GHRKSSASSTSPRYNNNSGTRTPTSGEASPYLMSPWNNQPVSPYTKSPWIMPPYSPNENL 108
G R SSAS+ +G S E SP +MSPWN +P+T++ W + ENL
Sbjct: 36 GIRNSSASAVG------TGMYDRMSCEGSPMMMSPWNQ--ATPFTQTQWS----TVEENL 83
Query: 109 LSSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAII 168
NGLIGS+VR+EGHIYSLAA+ DLLYTGSDSKNIRVWKNLKEFS FK NSGLVKAI+
Sbjct: 84 PQ--NGLIGSLVREEGHIYSLAATKDLLYTGSDSKNIRVWKNLKEFSAFKCNSGLVKAIV 141
Query: 169 ISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRS 228
ISG+ KIFTGHQDGKIR+WKVS KN S+HKR G+LPT KD K+S+ P+NYVEV+++R+
Sbjct: 142 ISGE--KIFTGHQDGKIRVWKVSPKNQSLHKRSGTLPTLKDIFKASLKPRNYVEVKKHRT 199
Query: 229 VLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD 288
L I+H DAVSCLSLN EQGLLYS SWD+T+KVWRI+D KCLESI AHDDA+NSVV+ +
Sbjct: 200 ALWIKHADAVSCLSLNDEQGLLYSASWDRTIKVWRIADSKCLESIPAHDDAVNSVVSTTE 259
Query: 289 SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLV 348
++VF+GSADGTVK W+R+ QGK TKH L Q L K E+AVTALAV++ A VY GSSDGLV
Sbjct: 260 AIVFSGSADGTVKAWKRDQQGKYTKHTLMQTLTKQESAVTALAVSKNGAAVYFGSSDGLV 319
Query: 349 NFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTG 408
NFWE EK L++GG+L+GHK+AVLCL AG+LVFSGSAD+ IC+W+R+ H+CL+VLTG
Sbjct: 320 NFWEREKQLNYGGILKGHKLAVLCLEVAGSLVFSGSADKTICVWKRD-GNIHTCLSVLTG 378
Query: 409 HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGLHSPTQM 468
HTGPVKCLAVE DR E ++ D++W VYSGSLDKSVKVW VSE D+ + Q
Sbjct: 379 HTGPVKCLAVEADR----EASERRDKKWIVYSGSLDKSVKVWGVSESFIDMNQMSMMQQQ 434
Query: 469 RRQLV 473
++Q V
Sbjct: 435 QQQHV 439
|
|
| TAIR|locus:2074825 AT3G50390 "AT3G50390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1263 (449.7 bits), Expect = 1.1e-128, P = 1.1e-128
Identities = 242/398 (60%), Positives = 305/398 (76%)
Query: 70 TPTSGEASPYLMSPWNNQPVSPYTKSPW----IMPPYSPNENLLSSCNGLIGSIVRKEGH 125
+P+ G +SP SPW+ Q SP+ + + ++ S N L+GS+VR+EGH
Sbjct: 41 SPSEGSSSPLSKSPWSVQVDPSAVDSPYHSVKVTTDTTKEKSTNHSPNILLGSLVREEGH 100
Query: 126 IYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKI 185
IYSLA SGDLLYTGSDSKNIRVWKN EFS FKSNSGLVKAI+++GD KIFTGHQDGKI
Sbjct: 101 IYSLATSGDLLYTGSDSKNIRVWKNHVEFSSFKSNSGLVKAIVLAGD--KIFTGHQDGKI 158
Query: 186 RIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVE-VRRNRS--VLKIRHYDAVSCLS 242
R+WK + K ++VH+RVG++P DY+++S+ P +Y RRNRS L RH DA+SCL+
Sbjct: 159 RVWKAASKESNVHRRVGTMPNLLDYIRNSIVPSSYFNFTRRNRSSAALGFRHLDAISCLA 218
Query: 243 LNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKV 302
L+ ++ LLYSGSWDKT KVWR+SD +C+ES+NAH+DA+N+VV+GFD LVFTGSADGTVKV
Sbjct: 219 LSEDKRLLYSGSWDKTFKVWRVSDLRCVESVNAHEDAVNAVVSGFDGLVFTGSADGTVKV 278
Query: 303 WRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV 362
WRRE Q K TKH ++ LLK + AVTA+AV+Q + +VYCGSSDG VNFWE E ++ +GGV
Sbjct: 279 WRREDQAKDTKHFFSETLLKQDCAVTAIAVDQSATLVYCGSSDGTVNFWERENNMKNGGV 338
Query: 363 LRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGA-HSCLAVLTGHTGPVKCLAVEED 421
L+GHK+AVLCL AAGNL+FSGSAD I +WRR E G H CL+VLTGH GPVKCLAVE D
Sbjct: 339 LKGHKLAVLCLVAAGNLMFSGSADLGIRVWRRPEGGGEHVCLSVLTGHAGPVKCLAVERD 398
Query: 422 RDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDL 459
++ G++RW VYSGSLD+SVK+WRVSE +P +
Sbjct: 399 QES-----VSGERRWIVYSGSLDRSVKMWRVSESSPPM 431
|
|
| TAIR|locus:2015423 AT1G47610 "AT1G47610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1157 (412.3 bits), Expect = 1.8e-117, P = 1.8e-117
Identities = 229/348 (65%), Positives = 269/348 (77%)
Query: 110 SSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIII 169
S + L+G IVR+EGHIYSLAA+ DLLYTGSD+ IRVWKNL EFSGFKSNSGLVKAI+I
Sbjct: 11 SDGDSLVGEIVREEGHIYSLAATNDLLYTGSDNNYIRVWKNLNEFSGFKSNSGLVKAIVI 70
Query: 170 SGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSV 229
S ++ K+FTGHQDGKIR+WK S KN V+ R GSLP KD +KSSV P NYVEVRR R+
Sbjct: 71 SREA-KVFTGHQDGKIRVWKTSSKNPRVYTRAGSLPALKDVLKSSVKPSNYVEVRRCRTA 129
Query: 230 LKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS 289
L I+H DAVSCLSL +QGLLYS SWD+T+KVWRI D KC+ESI AHDDA+NSV +S
Sbjct: 130 LWIKHSDAVSCLSLAEDQGLLYSASWDRTVKVWRIHDLKCIESIKAHDDAVNSVTTA-ES 188
Query: 290 LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVN 349
LVFTGSADGTVKVW+RE++GK T H L Q LLK E+AVTAL + + VY GSSDG VN
Sbjct: 189 LVFTGSADGTVKVWKREIRGKRTAHSLFQTLLKQESAVTALVTSHMA--VYSGSSDGAVN 246
Query: 350 FWEC--EKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLT 407
FWE +K L H V + H++AVLC+AAAG L+FSG+AD+ IC+WRRE H+C++VLT
Sbjct: 247 FWEMGDKKLLKHCEVFKKHRLAVLCIAAAGKLLFSGAADKKICVWRREGK-VHTCVSVLT 305
Query: 408 GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455
GHTGPVKCLAV E + E GD R +YSGSLDKSVKVWRV H
Sbjct: 306 GHTGPVKCLAVVEPSGGEEE--DGGDGRLVLYSGSLDKSVKVWRVPRH 351
|
|
| TAIR|locus:2032452 AT1G24130 "AT1G24130" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
Identities = 168/382 (43%), Positives = 227/382 (59%)
Query: 98 IMPPYSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFS-- 155
++P S S + + ++ K ++ SLA S LLYTGS + IRVW FS
Sbjct: 44 LVPSLSFQHQSSSVDHHCLATLKDKSSYVSSLAVSDKLLYTGSSNSEIRVWPREPPFSPE 103
Query: 156 ---GFKSN-----SGLVKAIIISGDSNKIFTGHQDGKIRIWKV---SRKNASVHKRVGSL 204
G N +G VK+++I GD K+ + HQD KIR+WK+ S + +K V +L
Sbjct: 104 YSTGDDRNVVANGNGGVKSLVILGD--KLISAHQDHKIRVWKIIDESNRRGQKYKCVATL 161
Query: 205 PTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264
PT D K+ + K+YVEVRR++ + H DAVS L+L+ + LLYS SWD++ K+WR
Sbjct: 162 PTMNDRFKTLFSSKSYVEVRRHKKCTWVHHVDAVSSLALSQDGSLLYSASWDRSFKIWRT 221
Query: 265 SDCKCLESIN-AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKH 323
SD KCL+SI AHDDAIN++V D V+TGSAD +KVW + K KH L L KH
Sbjct: 222 SDFKCLDSIEKAHDDAINAIVVSKDGFVYTGSADKKIKVWNK----KDKKHSLVATLTKH 277
Query: 324 ENAVTALAVNQESAVVYCGSSDGLVNFWEC-------EKHLSHGGVLRGHKMAVLCLAAA 376
+AV ALA++++ V+Y G+ D + WE E H+S G LRGH+ A++CLA A
Sbjct: 278 LSAVNALAISEDGKVLYSGACDRSILVWERLINGDDEELHMSVVGALRGHRKAIMCLAVA 337
Query: 377 GNLVFSGSADRNICLWRRE--ESGAHSCLAVLTGHTGPVKCLAVE-EDRDHDHEYHQKGD 433
+LV SGSAD+++ +WRR E +SCLAVL GHT PVK LAV D D + +Y
Sbjct: 338 SDLVLSGSADKSLRVWRRGLMEKEGYSCLAVLEGHTKPVKSLAVSVSDSDSNSDYS---- 393
Query: 434 QRWTVYSGSLDKSVKVW--RVS 453
VYSGSLD S+KVW RVS
Sbjct: 394 --CMVYSGSLDLSLKVWNLRVS 413
|
|
| TAIR|locus:2083710 AT3G51930 "AT3G51930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
Identities = 157/347 (45%), Positives = 212/347 (61%)
Query: 124 GHIYSLAASGDLLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQ 181
G + SLA G+ L + S K+I VW+ +LK F+ F G VKA++ G +K+FT HQ
Sbjct: 62 GSVSSLALCGEFLLSASQGKDIIVWQQPDLKIFAKFGQGDGSVKALVSVG--SKVFTAHQ 119
Query: 182 DGKIRIWKVSRKNA-SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240
D +IR+WKVSR+N+ + + V +LPT KDY+ + NYV+ RRN L I H D++SC
Sbjct: 120 DSRIRVWKVSRRNSENAFRLVDTLPTTKDYLGKFMKQSNYVQTRRNHKRLWIEHADSISC 179
Query: 241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTV 300
L+++A G++YSGSWDKTLKVWR+SD KCLESI AHDDAIN +VAG D V++ SADG V
Sbjct: 180 LAVHA--GIIYSGSWDKTLKVWRLSDLKCLESIKAHDDAINGLVAG-DGRVYSASADGKV 236
Query: 301 KVW----RRELQGKGTK----HCLAQVLL-KHENAVTALAVNQESAVVYCGSSDGLVNFW 351
K+W R++++ + H L L + E +V ++ V+ + VY G SDG V W
Sbjct: 237 KIWGKEKRKQIESTSSSSSSLHVLKATLEGRAEVSVNSVVVSGDGNWVYGGGSDGFVIGW 296
Query: 352 EC-EKHLSH-----GGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAV 405
E EK G RGH MAVLC+ G +V SGSAD++I LWRRE +G V
Sbjct: 297 EKKEKEGDFEEWRLGFETRGHNMAVLCMCVVGEMVCSGSADKSIGLWRREVTGMLCKFGV 356
Query: 406 LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452
+ GH GPVKCL + G + +YSG LDKS++VW V
Sbjct: 357 IHGHEGPVKCLQASPNN--------VG-AGFMLYSGGLDKSLRVWWV 394
|
|
| TAIR|locus:2024031 AT1G24530 "AT1G24530" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 137/312 (43%), Positives = 196/312 (62%)
Query: 150 NLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKD 209
+L F+G SG VK++ SG+ KIFT HQDGKI +WK++ K+ +K++ +LPT D
Sbjct: 114 HLDTFNGQDPFSGTVKSVGFSGE--KIFTAHQDGKIGVWKLTAKSG--YKQLTTLPTLND 169
Query: 210 YVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC 269
++ PKNYV+VRR++ L I H DAV+ L+++ G +YS SWDKTLK+WR SD +C
Sbjct: 170 RLRRFALPKNYVQVRRHKKRLWIEHADAVTALAVS--DGFIYSVSWDKTLKIWRASDLRC 227
Query: 270 LESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTA 329
ESI AHDDA+N++ + V+TGSAD ++VW + K +H L L KH++AV A
Sbjct: 228 KESIKAHDDAVNAIAVSTNGTVYTGSADRRIRVWAKPTGEK--RHTLVATLEKHKSAVNA 285
Query: 330 LAVNQESAVVYCGSSDGLVNFWECE---KHLSHGGVLRGHKMAVLCLAAAGNLVFSGSAD 386
LA+N + +V++ GS D + WE E +++ G LRGH A+L L +L+ SGSAD
Sbjct: 286 LALNDDGSVLFSGSCDRSILVWEREDTSNYMAVRGALRGHDKAILSLFNVSDLLLSGSAD 345
Query: 387 RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKS 446
R + +WRR ++SCL VL+GHT PVK LA +++ D ++ SGSLD
Sbjct: 346 RTVRIWRRGPDSSYSCLEVLSGHTKPVKSLAAVREKELDDVV--------SIISGSLDGE 397
Query: 447 VKVWRVSEHAPD 458
VK W+VS PD
Sbjct: 398 VKCWKVSVTKPD 409
|
|
| TAIR|locus:2170061 AT5G50120 "AT5G50120" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 144/356 (40%), Positives = 208/356 (58%)
Query: 125 HIYSLAASGDLLYTGSDSKNIRVW-----KNLKEFS-------GFKSNSGLVKAIIISGD 172
+I SL +G LYTGS+ +R+W + L E S G + G VK+++I D
Sbjct: 40 YISSLTLAGKRLYTGSNDGVVRLWNANTLETLAEASSNGDVITGERGGGGAVKSLVILAD 99
Query: 173 SNKIFTGHQDGKIRIWKVS---RKNASVHK--RVGSLPTFKDYVKSSVNPKNYVEVRRNR 227
K+FT HQD KIR+WK++ ++ K + ++PT D + PKN VE+RR++
Sbjct: 100 --KLFTAHQDHKIRVWKINDVVEEDVGGKKYMHLATMPTISDRFAKCLMPKNQVEIRRHK 157
Query: 228 SVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI-NAHDDAINSVVAG 286
+ H DAVS L+L+ + LLYS SWD+TLK+WR +D KCLES NAHDDAIN+V
Sbjct: 158 KASWVHHVDAVSGLALSRDGTLLYSVSWDRTLKIWRTTDFKCLESFTNAHDDAINAVALS 217
Query: 287 FDSLVFTGSADGTVKVWRRELQG----KGTKHCLAQVLLKHENAVTALAVN-QESAVVYC 341
+ ++TGS+D +KVWR+ + K KH L +L +H + + ALA++ ++++
Sbjct: 218 ENGDIYTGSSDQRIKVWRKNINEENVKKKRKHSLVAILSEHNSGINALALSGTNGSLLHS 277
Query: 342 GSSDGLVNFWECEK--HLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGA 399
G SDG + WE + + G+LRGH +VLCLA +++ SGSAD+ + LW+
Sbjct: 278 GGSDGSILVWERDDGGDIVVVGMLRGHTESVLCLAVVSDILCSGSADKTVRLWKCSAKD- 336
Query: 400 HSCLAVLTGHTGPVKCL--AVEEDRDHDH-EYHQKGDQRWTVYSGSLDKSVKVWRV 452
+SCLA+L GH GPVKCL A + R D YH +YSG LD VKVW+V
Sbjct: 337 YSCLAMLEGHLGPVKCLTGAFRDSRKADEASYH--------IYSGGLDSQVKVWQV 384
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 473 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-49 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-35 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-32 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-21 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-18 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-11 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-07 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 4e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 4e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.001 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.001 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.002 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.003 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.004 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 2e-49
Identities = 92/339 (27%), Positives = 141/339 (41%), Gaps = 65/339 (19%)
Query: 123 EGH---IYSLAAS--GDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSNK 175
+GH + +A S G LL TGS I+VW + + K ++G V+ + S D
Sbjct: 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY 65
Query: 176 IFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY 235
+ +G D IR+W + V T H
Sbjct: 66 LASGSSDKTIRLWDLE-TGECVR-------TLTG------------------------HT 93
Query: 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV-VAGFDSLVFTG 294
VS ++ + + +L S S DKT+KVW + KCL ++ H D +NSV + + V +
Sbjct: 94 SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS 153
Query: 295 SADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE 354
S DGT+K+W T C+ L H V ++A + + + SSDG + W+
Sbjct: 154 SQDGTIKLWD-----LRTGKCV-ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207
Query: 355 KHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGP 412
G LRGH+ V +A + G L+ SGS D I +W C+ L+GHT
Sbjct: 208 T-GKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG---ECVQTLSGHTNS 263
Query: 413 VKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451
V LA D + SGS D ++++W
Sbjct: 264 VTSLAWSPDGK-------------RLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 4e-35
Identities = 72/299 (24%), Positives = 117/299 (39%), Gaps = 58/299 (19%)
Query: 157 FKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVN 216
K ++G V + S D + TG DG I++W + + G
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLET-GELLRTLKG-------------- 49
Query: 217 PKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH 276
H V ++ +A+ L SGS DKT+++W + +C+ ++ H
Sbjct: 50 -----------------HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGH 92
Query: 277 DDAINSV-VAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE 335
++SV + ++ + S D T+KVW E T CL L H + V ++A + +
Sbjct: 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-----TGKCL-TTLRGHTDWVNSVAFSPD 146
Query: 336 SAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWR 393
V S DG + W+ L GH V +A + G + S S+D I LW
Sbjct: 147 GTFVASSSQDGTIKLWDLRT-GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW- 204
Query: 394 REESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452
+ CL L GH V +A D + SGS D +++VW +
Sbjct: 205 --DLSTGKCLGTLRGHENGVNSVAFSPDGY-------------LLASGSEDGTIRVWDL 248
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 2e-32
Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 26/224 (11%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVA-GFDSLVF 292
H V+C++ + + LL +GS D T+KVW + + L ++ H + V A + +
Sbjct: 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLA 67
Query: 293 TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWE 352
+GS+D T+++W E T C+ + L H + V+++A + + ++ S D + W+
Sbjct: 68 SGSSDKTIRLWDLE-----TGECV-RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD 121
Query: 353 CEKHLSHGGVLRGHKMAVLCLAAAGN--LVFSGSADRNICLWRREESGAHSCLAVLTGHT 410
E LRGH V +A + + V S S D I LW + C+A LTGHT
Sbjct: 122 VET-GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW---DLRTGKCVATLTGHT 177
Query: 411 GPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454
G V +A D + + S S D ++K+W +S
Sbjct: 178 GEVNSVAFSPDGEK-------------LLSSSSDGTIKLWDLST 208
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 97.1 bits (240), Expect = 1e-21
Identities = 83/373 (22%), Positives = 150/373 (40%), Gaps = 40/373 (10%)
Query: 103 SPNENLLSSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSG 162
+ +EN + SL +S + + + V + +
Sbjct: 7 TSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHED 66
Query: 163 LVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVG-----------SLPTFKDYV 211
+ +I S D + +G DG I++W + + G S P +
Sbjct: 67 SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSIL 126
Query: 212 KSSVNPKNYVEVRRNRSVLKIR-----HYDAVSCLSLN-AEQGLLYSGSWDKTLKVWRIS 265
+S + V++ + K+ H ++V+ L+ + + L S D T+K+W +
Sbjct: 127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR 186
Query: 266 DCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKH 323
K L ++ H D ++S+ D L+ +GS+DGT+++W T L L H
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD-----LSTGKLLRSTLSGH 241
Query: 324 ENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVF 381
++V + + + + +++ GSSDG + W+ S L GH +VL +A G L+
Sbjct: 242 SDSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLA 300
Query: 382 SGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG 441
SGS+D + LW E+G L GH GPV L+ D V G
Sbjct: 301 SGSSDGTVRLW-DLETGKLLSSLTLKGHEGPVSSLSFSPDGS------------LLVSGG 347
Query: 442 SLDKSVKVWRVSE 454
S D ++++W +
Sbjct: 348 SDDGTIRLWDLRT 360
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.9 bits (211), Expect = 5e-18
Identities = 86/354 (24%), Positives = 136/354 (38%), Gaps = 61/354 (17%)
Query: 109 LSSCNGLIGSIVRKEGHIYSLAASGD---LLYTGSDSKNIRVW--KNLKEFSGFKSNSGL 163
LS+ LI ++ + SLA S D L S I++W + K S ++
Sbjct: 141 LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP 200
Query: 164 VKAIIISGDSNKIFTGH-QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVE 222
V ++ S D + DG IR+W +S
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK---------------------------- 232
Query: 223 VRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI-SDCKCLESINAHDDAIN 281
RS L VS S + LL SGS D T+++W + S L +++ H ++
Sbjct: 233 --LLRSTLSGHSDSVVSSFSPD--GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVL 288
Query: 282 SV-VAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVN-QESAVV 339
SV + L+ +GS+DGTV++W E + L HE V++L+ + S +V
Sbjct: 289 SVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL----TLKGHEGPVSSLSFSPDGSLLV 344
Query: 340 YCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGA 399
GS DG + W+ + + + + G +V SGS D + LW
Sbjct: 345 SGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTG-- 402
Query: 400 HSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453
S L L GHT V L D + SGS D ++++W +
Sbjct: 403 -SLLRNLDGHTSRVTSLDFSPDGKS-------------LASGSSDNTIRLWDLK 442
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.3 bits (160), Expect = 1e-11
Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 30/248 (12%)
Query: 213 SSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES 272
SS + +N ++ + + + ++ L + LL + D + + +S
Sbjct: 5 SSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSL----L 60
Query: 273 INAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALA 331
+ H+D+I S+ D L+ +GS+DGT+K+W + + + H+++V+ LA
Sbjct: 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLW----DLDNGEKLIKSLEGLHDSSVSKLA 116
Query: 332 V---NQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGN---LVFSGSA 385
+ + S ++ S DG V W+ L GH +V LA + + L S
Sbjct: 117 LSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSL 176
Query: 386 DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDK 445
D I LW L+ L GHT PV LA D + SGS D
Sbjct: 177 DGTIKLWDLRTG---KPLSTLAGHTDPVSSLAFSPDG------------GLLIASGSSDG 221
Query: 446 SVKVWRVS 453
++++W +S
Sbjct: 222 TIRLWDLS 229
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.0 bits (123), Expect = 4e-07
Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 16/175 (9%)
Query: 109 LSSCNGLIGSIVRKEGHIYSLAASGD--LLYTGSDSKNIRVW----KNLKEFSGFKSNSG 162
L S + L+ ++ + S+A S D LL +GS +R+W L K + G
Sbjct: 270 LRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG 329
Query: 163 LVKAIIISGDSNKIFTG-HQDGKIRIWKVSRKNASV----HKRVGSLPTFKDYVKSSVNP 217
V ++ S D + + +G DG IR+W + H V S+ D S
Sbjct: 330 PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGS 389
Query: 218 KNYVEVRRNRSVLKIR-----HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267
+ + S + H V+ L + + L SGS D T+++W +
Sbjct: 390 TDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTS 444
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.9 bits (102), Expect = 1e-04
Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 20/146 (13%)
Query: 318 QVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRG-HKMAVLCLAAA 376
+L HE+++T++A + + ++ GSSDG + W+ + L G H +V LA +
Sbjct: 59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS 118
Query: 377 GN-----LVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQK 431
L+ S S D + LW G + L GH+ V LA D
Sbjct: 119 SPDGNSILLASSSLDGTVKLWDLSTPG--KLIRTLEGHSESVTSLAFSPD---------- 166
Query: 432 GDQRWTVYSGSLDKSVKVWRVSEHAP 457
+ SLD ++K+W + P
Sbjct: 167 --GKLLASGSSLDGTIKLWDLRTGKP 190
|
Length = 466 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 2e-04
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 267 CKCLESINAHDDAINSV-VAGFDSLVFTGSADGTVKVW 303
K L ++ H + SV + +L+ +GS DGTV+VW
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 4e-04
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVW 262
H V+ ++ + + LL SGS D T++VW
Sbjct: 10 HTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 4e-04
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 268 KCLESINAHDDAINSV-VAGFDSLVFTGSADGTVKVW 303
+ L+++ H + SV + + +GS DGT+K+W
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 0.001
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVW 262
H V+ ++ + + L SGS D T+K+W
Sbjct: 11 HTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 0.001
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 13/50 (26%)
Query: 401 SCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVW 450
L L GHTGPV +A D + + SGS D ++K+W
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKY-------------LASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (82), Expect = 0.002
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 13/50 (26%)
Query: 401 SCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVW 450
L L GHTGPV +A D + SGS D +V+VW
Sbjct: 2 KLLRTLKGHTGPVTSVAF----SPDGNL---------LASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 35.0 bits (81), Expect = 0.003
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 361 GVLRGHKMAVLCLA--AAGNLVFSGSADRNICLW 392
L+GH V +A GNL+ SGS D + +W
Sbjct: 5 RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 35.0 bits (81), Expect = 0.004
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 362 VLRGHKMAVLCLA--AAGNLVFSGSADRNICLW 392
L+GH V +A G + SGS D I LW
Sbjct: 7 TLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 473 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 100.0 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 100.0 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.98 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.98 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.98 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.98 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.98 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.97 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.97 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.97 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.97 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.97 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.97 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.97 | |
| PTZ00420 | 568 | coronin; Provisional | 99.97 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.97 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.97 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.96 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.96 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.96 | |
| PTZ00420 | 568 | coronin; Provisional | 99.96 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.95 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.95 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.95 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.95 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.95 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.95 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.95 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.94 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.94 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.94 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.94 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.94 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.94 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.94 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.94 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.93 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.93 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.93 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.92 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.92 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.92 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.92 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.92 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.91 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.91 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.91 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.91 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.91 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.91 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.9 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.9 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.9 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.9 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.9 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.89 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.89 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.89 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.89 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.88 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.87 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.87 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.87 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.87 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.87 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.85 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.84 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.84 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.83 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.83 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.83 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.83 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.83 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.82 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.81 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.81 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.81 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.81 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.8 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.8 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.8 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.79 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.79 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.79 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.78 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.78 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.77 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.76 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.74 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.74 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.73 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.73 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.73 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.71 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.7 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.7 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.69 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.69 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.69 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.69 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.68 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.65 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.65 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.63 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.63 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.62 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.61 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.6 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.6 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.59 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.59 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.58 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.58 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.57 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.56 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.56 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.55 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.55 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.55 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.55 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.53 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.5 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.5 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.48 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.47 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.46 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.45 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.45 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.45 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.43 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.42 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.42 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.42 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.41 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.4 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.4 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.39 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.38 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.38 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.38 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.36 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.35 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.33 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.32 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.31 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.29 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.28 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.27 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.27 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.26 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.25 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.24 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.2 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.2 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.18 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.17 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 99.17 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.14 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.14 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.11 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.09 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.08 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.07 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.07 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.07 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.06 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.05 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.02 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.0 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.98 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.97 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.96 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.95 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.93 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.93 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.92 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.91 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.86 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.85 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.84 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.83 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.82 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.82 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.82 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.81 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.81 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.81 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.8 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.79 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.79 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.78 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.75 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.74 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.73 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.71 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.7 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.69 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.69 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.68 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.67 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.66 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.61 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.6 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.57 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.57 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.54 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.53 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.47 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.46 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.45 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.45 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.38 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.33 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.31 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.26 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.21 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.21 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.17 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.15 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.15 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.14 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.09 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.09 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.09 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.07 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.05 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.01 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.98 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.96 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.93 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.92 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.88 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.85 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.82 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.82 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.75 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.72 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.66 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.62 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.62 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.62 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.62 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.61 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.59 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.59 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.58 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.55 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.51 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.5 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.47 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.43 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.4 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.39 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.38 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.36 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.34 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.31 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.27 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.27 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.25 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.24 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.21 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.13 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.09 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.09 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.93 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.9 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.85 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.84 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.77 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.75 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.73 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.71 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.67 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.63 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.59 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.58 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.52 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.48 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.44 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.43 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.19 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.19 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.18 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 96.07 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 95.95 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 95.88 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 95.88 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.76 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.73 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.66 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.48 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.47 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.02 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 95.01 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 94.99 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 94.7 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 94.6 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.6 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 94.58 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 94.56 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 94.51 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 94.4 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.39 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 94.22 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.06 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 94.04 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 93.97 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 93.97 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 93.86 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 93.85 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 93.85 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 93.81 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 93.74 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 93.67 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 93.6 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 93.48 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 93.47 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 93.24 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 93.2 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 93.17 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 93.16 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 93.16 | |
| PLN02153 | 341 | epithiospecifier protein | 93.08 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 93.07 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 92.41 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 92.35 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 92.35 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 92.22 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 92.19 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 92.16 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 92.11 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 92.0 | |
| KOG1896 | 1366 | consensus mRNA cleavage and polyadenylation factor | 91.89 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 91.3 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 91.28 | |
| PLN02193 | 470 | nitrile-specifier protein | 91.19 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 91.11 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 90.9 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 90.73 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 90.6 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 90.25 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 90.09 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 90.0 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 89.9 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 89.86 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 89.78 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 88.97 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 88.9 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 88.09 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 87.94 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 87.74 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 87.73 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 87.71 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 86.35 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 86.01 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 85.98 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 85.94 | |
| PRK10115 | 686 | protease 2; Provisional | 85.66 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 85.34 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 85.0 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 84.85 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 84.38 | |
| KOG2714 | 465 | consensus SETA binding protein SB1 and related pro | 84.38 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 84.29 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 83.7 | |
| PF12341 | 27 | DUF3639: Protein of unknown function (DUF3639) ; I | 83.38 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 83.35 | |
| PLN02153 | 341 | epithiospecifier protein | 83.34 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 83.25 | |
| PRK10115 | 686 | protease 2; Provisional | 82.37 | |
| TIGR01063 | 800 | gyrA DNA gyrase, A subunit. This model describes t | 81.59 | |
| PLN02193 | 470 | nitrile-specifier protein | 80.93 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 80.93 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 80.6 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 80.47 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=342.52 Aligned_cols=294 Identities=27% Similarity=0.386 Sum_probs=260.4
Q ss_pred ceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
.-.++.||.+.|.|+.|+ |..||+|+.|.++|+||.. ....+.++|...|.|++|+|||+.||+|+.||.|++||.
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 355788999999998765 7899999999999999865 678889999999999999999999999999999999999
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-----CCCEEEEEeCCCCEEEEEcC
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-----EQGLLYSGSWDKTLKVWRIS 265 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-----~~~~l~s~s~dg~v~vwd~~ 265 (473)
.+++..-... .+|...|++++|.| ..++|++++.||.|+|||+.
T Consensus 187 ktg~~~g~~l-------------------------------~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~ 235 (480)
T KOG0271|consen 187 KTGQQIGRAL-------------------------------RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK 235 (480)
T ss_pred CCCCcccccc-------------------------------cCcccceeEEeecccccCCCccceecccCCCCEEEEEcc
Confidence 8887543322 25999999999987 56799999999999999999
Q ss_pred CCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEc-----------c
Q 012007 266 DCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVN-----------Q 334 (473)
Q Consensus 266 ~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~-----------~ 334 (473)
.++++..+.+|..+|+|+.|.-++++++|+.|++|++|+... ..+...+.+|...|+.|+.+ |
T Consensus 236 ~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~d------G~~~r~lkGHahwvN~lalsTdy~LRtgaf~~ 309 (480)
T KOG0271|consen 236 LGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALD------GKLCRELKGHAHWVNHLALSTDYVLRTGAFDH 309 (480)
T ss_pred CceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccc------hhHHHhhcccchheeeeeccchhhhhcccccc
Confidence 999999999999999999999999999999999999999853 33567889999999998876 3
Q ss_pred CCC-------------------------EEEEeCCCCcEEEEecCCcccccceeecCcceEEE--EEecCCEEEEEeCCC
Q 012007 335 ESA-------------------------VVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLC--LAAAGNLVFSGSADR 387 (473)
Q Consensus 335 ~~~-------------------------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~s~~~dg 387 (473)
.++ .|++|+.|.++.+|+.....++...+.+|...|.. |+||++++|+++.|.
T Consensus 310 t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk 389 (480)
T KOG0271|consen 310 TGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK 389 (480)
T ss_pred ccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc
Confidence 333 49999999999999988777777788899988854 567899999999999
Q ss_pred cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccC
Q 012007 388 NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKG 461 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~ 461 (473)
.|++|+.++ ++.+..++||-++|..++|+.|.+ +|++|+.|.+++||++.+.+.....
T Consensus 390 SVkLW~g~t---Gk~lasfRGHv~~VYqvawsaDsR-------------LlVS~SkDsTLKvw~V~tkKl~~DL 447 (480)
T KOG0271|consen 390 SVKLWDGRT---GKFLASFRGHVAAVYQVAWSADSR-------------LLVSGSKDSTLKVWDVRTKKLKQDL 447 (480)
T ss_pred ceeeeeCCC---cchhhhhhhccceeEEEEeccCcc-------------EEEEcCCCceEEEEEeeeeeecccC
Confidence 999999999 688999999999999999999998 9999999999999999987655443
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=325.53 Aligned_cols=316 Identities=23% Similarity=0.390 Sum_probs=269.4
Q ss_pred CCCCCCCCCCccCCCCCCCC------CCCCCCCCCCCCCCCCcccccccccceeeeeeecccEEEEE--ecCCEEEEeeC
Q 012007 70 TPTSGEASPYLMSPWNNQPV------SPYTKSPWIMPPYSPNENLLSSCNGLIGSIVRKEGHIYSLA--ASGDLLYTGSD 141 (473)
Q Consensus 70 ~~~~~~~~p~~~~~~~~~~~------~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~h~~~V~~~~--~~g~~l~tg~~ 141 (473)
+..+||..|+++..++|+.. .+.+.+.|-. . ......+.++|...|.|++ |||+.||+|+.
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~-----~------TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~ 177 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDL-----D------TETPLFTCKGHKNWVLCVAWSPDGKKIASGSK 177 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeecc-----C------CCCcceeecCCccEEEEEEECCCcchhhcccc
Confidence 55788999999999988443 2223333322 1 2234667889999999887 56999999999
Q ss_pred CCcEEEeeCC---ccccccccCcccEEEEEEeC-----CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEee
Q 012007 142 SKNIRVWKNL---KEFSGFKSNSGLVKAIIISG-----DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKS 213 (473)
Q Consensus 142 dg~i~vwd~~---~~~~~~~~h~~~V~~l~~s~-----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 213 (473)
||.|++||.. .....+.+|...|++++|.| ..++||+++.||.|+|||+..+.+.....
T Consensus 178 dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls------------- 244 (480)
T KOG0271|consen 178 DGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS------------- 244 (480)
T ss_pred CCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec-------------
Confidence 9999999954 34567999999999999965 56799999999999999998876544333
Q ss_pred cCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC-----
Q 012007 214 SVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD----- 288 (473)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~----- 288 (473)
+|+.+|+|+.|--+ .++++|+.|++|++|+...|++.+.+++|...|+.++.+.+
T Consensus 245 -------------------gHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRt 304 (480)
T KOG0271|consen 245 -------------------GHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRT 304 (480)
T ss_pred -------------------cCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhc
Confidence 69999999999754 59999999999999999999999999999999999987721
Q ss_pred --------------------------------CEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC
Q 012007 289 --------------------------------SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES 336 (473)
Q Consensus 289 --------------------------------~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 336 (473)
..+++|+.|.++.+|+.. ....++..+.+|..-|+.+.|+||+
T Consensus 305 gaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~-----~~kkpi~rmtgHq~lVn~V~fSPd~ 379 (480)
T KOG0271|consen 305 GAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF-----KSKKPITRMTGHQALVNHVSFSPDG 379 (480)
T ss_pred cccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc-----ccccchhhhhchhhheeeEEECCCc
Confidence 159999999999999976 3444667889999999999999999
Q ss_pred CEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCcee
Q 012007 337 AVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVK 414 (473)
Q Consensus 337 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~ 414 (473)
+++++++.|..|++||.++++. ...+++|-..|..+++ |.++|++|+.|.++++|++++ .+....+.||...|.
T Consensus 380 r~IASaSFDkSVkLW~g~tGk~-lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t---kKl~~DLpGh~DEVf 455 (480)
T KOG0271|consen 380 RYIASASFDKSVKLWDGRTGKF-LASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT---KKLKQDLPGHADEVF 455 (480)
T ss_pred cEEEEeecccceeeeeCCCcch-hhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeee---eeecccCCCCCceEE
Confidence 9999999999999999998754 4688999999987776 477999999999999999999 688889999999999
Q ss_pred EEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 415 CLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
++.|+||+. .+++|+.|+.+++|.
T Consensus 456 ~vDwspDG~-------------rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 456 AVDWSPDGQ-------------RVASGGKDKVLRLWR 479 (480)
T ss_pred EEEecCCCc-------------eeecCCCceEEEeec
Confidence 999999999 899999999999995
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-46 Score=324.01 Aligned_cols=276 Identities=22% Similarity=0.367 Sum_probs=246.5
Q ss_pred eecccEEE--EEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCC--CCEEEEEeCCCeEEEEeCCCCC
Q 012007 121 RKEGHIYS--LAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGD--SNKIFTGHQDGKIRIWKVSRKN 194 (473)
Q Consensus 121 ~h~~~V~~--~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~--~~~l~s~~~dg~i~vwd~~~~~ 194 (473)
+.+.+|.. ++.+++.||||+.+|.++||+.. ..+..|.+|...|.++.|+|. +..||||+.||++++|++++..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 44555554 45569999999999999999855 567889999999999999997 5689999999999999998764
Q ss_pred eeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee
Q 012007 195 ASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN 274 (473)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 274 (473)
...... +|...|..++|+|+|++|++++.|.+-++||++++..+...+
T Consensus 253 ~l~~l~--------------------------------gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QE 300 (459)
T KOG0272|consen 253 PLQDLE--------------------------------GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQE 300 (459)
T ss_pred chhhhh--------------------------------cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhc
Confidence 433222 599999999999999999999999999999999999999999
Q ss_pred cCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEec
Q 012007 275 AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWEC 353 (473)
Q Consensus 275 ~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~ 353 (473)
+|...|.+++|.++| ++++|+.|..-+|||++++. .+..+.+|..+|.+++|+|+|..||+|+.|++++|||+
T Consensus 301 GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr------~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDL 374 (459)
T KOG0272|consen 301 GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR------CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDL 374 (459)
T ss_pred ccccccceeEecCCCceeeccCccchhheeecccCc------EEEEecccccceeeEeECCCceEEeecCCCCcEEEeee
Confidence 999999999999999 88899999999999998544 35678889999999999999999999999999999999
Q ss_pred CCcccccceeecCcceEEEEE--e-cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCccccc
Q 012007 354 EKHLSHGGVLRGHKMAVLCLA--A-AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQ 430 (473)
Q Consensus 354 ~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~ 430 (473)
+.... ...+.+|...|..+. + .|.+|++++.|++++||...+ +.+++.+.||.+.|.++++++++.
T Consensus 375 R~r~~-ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~---~~~~ksLaGHe~kV~s~Dis~d~~------- 443 (459)
T KOG0272|consen 375 RMRSE-LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT---WSPLKSLAGHEGKVISLDISPDSQ------- 443 (459)
T ss_pred ccccc-ceecccccchhhheEecccCCeEEEEcccCcceeeecCCC---cccchhhcCCccceEEEEeccCCc-------
Confidence 97544 567889999886554 4 489999999999999999888 899999999999999999999999
Q ss_pred CCCccEEEEEeeCCCcEEEEE
Q 012007 431 KGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 431 ~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
+++|++.|.++++|.
T Consensus 444 ------~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 444 ------AIATSSFDRTIKLWR 458 (459)
T ss_pred ------eEEEeccCceeeecc
Confidence 899999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=280.01 Aligned_cols=288 Identities=21% Similarity=0.341 Sum_probs=244.3
Q ss_pred ceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
..++|+||.+.|+++.+. .+.|++++.||.+.|||.. .....+.-....|..++|+|.|+++|.|+.|+...||++
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 458899999999999875 7899999999999999954 556666777899999999999999999999999999999
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL 270 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~ 270 (473)
.+.+......+ ...+.+|++.+.|+.|-+| ..|++++.|.+..+||+++++.+
T Consensus 127 s~~d~~g~~~v--------------------------~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~ 179 (343)
T KOG0286|consen 127 STRDAEGNVRV--------------------------SRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQT 179 (343)
T ss_pred cccccccccee--------------------------eeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEE
Confidence 86532111110 0112359999999999874 57899999999999999999999
Q ss_pred EEeecCCCceeEEEEcC-CC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcE
Q 012007 271 ESINAHDDAINSVVAGF-DS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLV 348 (473)
Q Consensus 271 ~~~~~~~~~v~~l~~~~-~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i 348 (473)
..+.+|.+.|.++.++| ++ .+++|+.|+..++||++.+ ...+.+.+|+..|++++|.|+|.-+++|+.|++.
T Consensus 180 ~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~------~c~qtF~ghesDINsv~ffP~G~afatGSDD~tc 253 (343)
T KOG0286|consen 180 QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG------QCVQTFEGHESDINSVRFFPSGDAFATGSDDATC 253 (343)
T ss_pred EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc------ceeEeecccccccceEEEccCCCeeeecCCCcee
Confidence 99999999999999999 44 8999999999999999843 3578899999999999999999999999999999
Q ss_pred EEEecCCcccccceee-cCcceEEE--EEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCC
Q 012007 349 NFWECEKHLSHGGVLR-GHKMAVLC--LAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHD 425 (473)
Q Consensus 349 ~iwd~~~~~~~~~~~~-~~~~~v~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 425 (473)
++||++...+...... .-...+++ |+..|++|++|..|.++.+||.-. .+.+..+.+|.+.|++|..+||+.
T Consensus 254 RlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk---~e~vg~L~GHeNRvScl~~s~DG~-- 328 (343)
T KOG0286|consen 254 RLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLK---GERVGVLAGHENRVSCLGVSPDGM-- 328 (343)
T ss_pred EEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccc---cceEEEeeccCCeeEEEEECCCCc--
Confidence 9999997655432211 11223444 455699999999999999999887 577888999999999999999998
Q ss_pred cccccCCCccEEEEEeeCCCcEEEEE
Q 012007 426 HEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 426 ~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
.|+||+.|..+|||.
T Consensus 329 -----------av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 329 -----------AVATGSWDSTLRIWA 343 (343)
T ss_pred -----------EEEecchhHheeecC
Confidence 899999999999994
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=269.90 Aligned_cols=275 Identities=19% Similarity=0.383 Sum_probs=234.5
Q ss_pred CEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeE
Q 012007 134 DLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYV 211 (473)
Q Consensus 134 ~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 211 (473)
-+|++++.|.+||+|... .+..++....+.|+.+.+.|++++||+++.- .||+||+.+.+.......
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~---------- 79 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATF---------- 79 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEE----------
Confidence 479999999999999854 5667788778999999999999999998765 799999998875332222
Q ss_pred eecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-E
Q 012007 212 KSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-L 290 (473)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~ 290 (473)
.+|...|..+.|..+|+++++|++||+++|||++...+.+.++ |..+|+++..+|+. .
T Consensus 80 --------------------e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQte 138 (311)
T KOG0315|consen 80 --------------------EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTE 138 (311)
T ss_pred --------------------eccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcce
Confidence 2599999999999999999999999999999999977766665 67999999999987 8
Q ss_pred EEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCC-----cccccceeec
Q 012007 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEK-----HLSHGGVLRG 365 (473)
Q Consensus 291 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~ 365 (473)
|++|..+|.|++||+.. ..+...........|.++...|||.+|+.+...|..++|++-+ ...+...++.
T Consensus 139 Lis~dqsg~irvWDl~~-----~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a 213 (311)
T KOG0315|consen 139 LISGDQSGNIRVWDLGE-----NSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA 213 (311)
T ss_pred EEeecCCCcEEEEEccC-----CccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec
Confidence 99999999999999973 2233344455568899999999999999999999999999854 3344456778
Q ss_pred CcceEE--EEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeC
Q 012007 366 HKMAVL--CLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSL 443 (473)
Q Consensus 366 ~~~~v~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~ 443 (473)
|...++ -++|++++|++++.|.+++||+.++. .+....+.+|+..+.+.+|+.|+. +|+||+.
T Consensus 214 h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg~-------------YlvTass 278 (311)
T KOG0315|consen 214 HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADGE-------------YLVTASS 278 (311)
T ss_pred ccceEEEEEECCCCcEEEeecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccCcc-------------EEEecCC
Confidence 887774 46789999999999999999999884 477778899999999999999999 9999999
Q ss_pred CCcEEEEEcCCCCCCcc
Q 012007 444 DKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 444 Dg~v~iW~i~~~~~~~~ 460 (473)
|+.+++|++..++....
T Consensus 279 d~~~rlW~~~~~k~v~q 295 (311)
T KOG0315|consen 279 DHTARLWDLSAGKEVRQ 295 (311)
T ss_pred CCceeecccccCceeee
Confidence 99999999999885444
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=270.76 Aligned_cols=285 Identities=22% Similarity=0.378 Sum_probs=234.3
Q ss_pred cceeeeeeecccEEEEEec---CCEEEEeeCCCcEEEeeCC-------ccccccccCcccEEEEEEeCCCCEEEEEeCCC
Q 012007 114 GLIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNL-------KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~---g~~l~tg~~dg~i~vwd~~-------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 183 (473)
.+..+|.+|.+.|.+++-. .+.+++++.|.++.+|++. ..++.+.+|+..|..++.++||++.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 3567899999999998853 6799999999999999753 34778999999999999999999999999999
Q ss_pred eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEE
Q 012007 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWR 263 (473)
Q Consensus 184 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd 263 (473)
++++||+.+++....+. +|...|.+++|++|...+++|+.|.+|++|+
T Consensus 86 ~lrlWDl~~g~~t~~f~--------------------------------GH~~dVlsva~s~dn~qivSGSrDkTiklwn 133 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFV--------------------------------GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWN 133 (315)
T ss_pred eEEEEEecCCcEEEEEE--------------------------------ecCCceEEEEecCCCceeecCCCcceeeeee
Confidence 99999999986544433 6999999999999999999999999999999
Q ss_pred cCCCeeeEEeec-CCCceeEEEEcCCC---EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEE
Q 012007 264 ISDCKCLESINA-HDDAINSVVAGFDS---LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVV 339 (473)
Q Consensus 264 ~~~~~~~~~~~~-~~~~v~~l~~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l 339 (473)
+........... +.+.|+|+.|+|.. .|++++.|++|++||++ ...+...+.+|...++.++++|||.+.
T Consensus 134 t~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~------~~~l~~~~~gh~~~v~t~~vSpDGslc 207 (315)
T KOG0279|consen 134 TLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR------NCQLRTTFIGHSGYVNTVTVSPDGSLC 207 (315)
T ss_pred ecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC------CcchhhccccccccEEEEEECCCCCEE
Confidence 865444333333 27899999999984 89999999999999996 344567788999999999999999999
Q ss_pred EEeCCCCcEEEEecCCcccccceeecCcceEEEEEec-CCEEEEEeCCCcEEEEecCCCCceeEEEEec----CC-----
Q 012007 340 YCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA-GNLVFSGSADRNICLWRREESGAHSCLAVLT----GH----- 409 (473)
Q Consensus 340 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~h----- 409 (473)
++|+.||.+.+||++.++.+ ...+|...|.++++. .++.+++..+..|+|||+.+. .++..+. +.
T Consensus 208 asGgkdg~~~LwdL~~~k~l--ysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~---~~v~~l~~d~~g~s~~~~ 282 (315)
T KOG0279|consen 208 ASGGKDGEAMLWDLNEGKNL--YSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESK---AVVEELKLDGIGPSSKAG 282 (315)
T ss_pred ecCCCCceEEEEEccCCcee--EeccCCCeEeeEEecCCceeEeeccCCceEEEeccch---hhhhhccccccccccccC
Confidence 99999999999999987664 444577777666665 334444455667999999983 3443332 11
Q ss_pred CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 410 TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 410 ~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
.-...+++|+++|. .|++|-.|+.|++|.+..
T Consensus 283 ~~~clslaws~dG~-------------tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 283 DPICLSLAWSADGQ-------------TLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred CcEEEEEEEcCCCc-------------EEEeeecCCcEEEEEeec
Confidence 22357889999999 799999999999999853
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=281.19 Aligned_cols=302 Identities=21% Similarity=0.381 Sum_probs=260.0
Q ss_pred CCCCCCCCCCCCcccccccccceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEE
Q 012007 94 KSPWIMPPYSPNENLLSSCNGLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIII 169 (473)
Q Consensus 94 ~~~~~~~~~~p~~~~~~~~~~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~ 169 (473)
.+.|..|.|..... +.+.+.+|.+.|.|++.+ .+++++|+.|++|+|||+. +...++.+|-..|..+++
T Consensus 129 ~~~~~rPeWHapwK-------l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vav 201 (460)
T KOG0285|consen 129 ASRMPRPEWHAPWK-------LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAV 201 (460)
T ss_pred cccCCCccccCcce-------ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeee
Confidence 44566766765544 467788999999999877 6799999999999999976 455678899999999999
Q ss_pred eCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCE
Q 012007 170 SGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGL 249 (473)
Q Consensus 170 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 249 (473)
++...||++++.|+.|+.||++..+.+.... +|-+.|.|++.+|.-+.
T Consensus 202 S~rHpYlFs~gedk~VKCwDLe~nkvIR~Yh--------------------------------GHlS~V~~L~lhPTldv 249 (460)
T KOG0285|consen 202 SKRHPYLFSAGEDKQVKCWDLEYNKVIRHYH--------------------------------GHLSGVYCLDLHPTLDV 249 (460)
T ss_pred cccCceEEEecCCCeeEEEechhhhhHHHhc--------------------------------cccceeEEEecccccee
Confidence 9999999999999999999999887665443 59999999999999999
Q ss_pred EEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEE
Q 012007 250 LYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVT 328 (473)
Q Consensus 250 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~ 328 (473)
|++|+.|.+++|||+++...+..+.+|..+|..+.+.+-+ .+++|+.|++|++||++.+. ....+..|...|.
T Consensus 250 l~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk------t~~tlt~hkksvr 323 (460)
T KOG0285|consen 250 LVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK------TMITLTHHKKSVR 323 (460)
T ss_pred EEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCc------eeEeeecccceee
Confidence 9999999999999999999999999999999999987654 99999999999999998543 3567788999999
Q ss_pred EEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEec-CCEEEEEeCCCcEEEEecCCCCceeEEEEec
Q 012007 329 ALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA-GNLVFSGSADRNICLWRREESGAHSCLAVLT 407 (473)
Q Consensus 329 ~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 407 (473)
+++.+|....+++++.| .|+-|++..+..... +.+|...+.+++.+ ..++++|+.+|.|.+||.+++...+..+...
T Consensus 324 al~lhP~e~~fASas~d-nik~w~~p~g~f~~n-lsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~v 401 (460)
T KOG0285|consen 324 ALCLHPKENLFASASPD-NIKQWKLPEGEFLQN-LSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIV 401 (460)
T ss_pred EEecCCchhhhhccCCc-cceeccCCccchhhc-cccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccc
Confidence 99999999999999887 599999988765544 88999999999876 7799999999999999999865555554333
Q ss_pred C-----CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 408 G-----HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 408 ~-----h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
. ....|.+.+|...+. .|+||..|++|++|+-.+.
T Consensus 402 qpGSl~sEagI~as~fDktg~-------------rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 402 QPGSLESEAGIFASCFDKTGS-------------RLITGEADKTIKMYKEDEH 441 (460)
T ss_pred cCCccccccceeEEeecccCc-------------eEEeccCCcceEEEecccc
Confidence 2 244689999999988 7999999999999987654
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-39 Score=265.22 Aligned_cols=289 Identities=22% Similarity=0.336 Sum_probs=242.6
Q ss_pred ceeeeeeecccEEEEEec---CCEEEEeeCCCcEEEeeCCc-----cccc-cccCcccEEEEEEeCCCCEEEEEeCCCeE
Q 012007 115 LIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLK-----EFSG-FKSNSGLVKAIIISGDSNKIFTGHQDGKI 185 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~~---g~~l~tg~~dg~i~vwd~~~-----~~~~-~~~h~~~V~~l~~s~~~~~l~s~~~dg~i 185 (473)
++..+.+|.+.|..++++ |..||+|+.|+.||||+... .... -.+|+..|..++|+|.|++|++|+.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 467889999999999987 34899999999999998763 1111 23699999999999999999999999999
Q ss_pred EEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 012007 186 RIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS 265 (473)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~ 265 (473)
.||.-..++...... +.||...|.|++|+++|++||+++.|+.|-||.+.
T Consensus 86 ~Iw~k~~~efecv~~------------------------------lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d 135 (312)
T KOG0645|consen 86 VIWKKEDGEFECVAT------------------------------LEGHENEVKCVAWSASGNYLATCSRDKSVWIWEID 135 (312)
T ss_pred EEeecCCCceeEEee------------------------------eeccccceeEEEEcCCCCEEEEeeCCCeEEEEEec
Confidence 999987665443332 23699999999999999999999999999999986
Q ss_pred C---CeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEE
Q 012007 266 D---CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC 341 (473)
Q Consensus 266 ~---~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~ 341 (473)
. .+++..++.|...|..+.|+|.. +|++++.|.+|++|+-.. .......+.+.+|...|.+++|++.|..|++
T Consensus 136 eddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~---dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s 212 (312)
T KOG0645|consen 136 EDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED---DDDWECVQTLDGHENTVWSLAFDNIGSRLVS 212 (312)
T ss_pred CCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecC---CCCeeEEEEecCccceEEEEEecCCCceEEE
Confidence 4 46788899999999999999976 999999999999998763 2466778899999999999999999999999
Q ss_pred eCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCC---CceeEE-EEecCCCCceeEEE
Q 012007 342 GSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREES---GAHSCL-AVLTGHTGPVKCLA 417 (473)
Q Consensus 342 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~-~~~~~h~~~V~~l~ 417 (473)
++.|++|+||-.... ....|...+..++++...|++++.|+.|++|..... .....+ ..-..|...|++++
T Consensus 213 ~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~ 287 (312)
T KOG0645|consen 213 CSDDGTVSIWRLYTD-----LSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQ 287 (312)
T ss_pred ecCCcceEeeeeccC-----cchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEE
Confidence 999999999986632 334577788888888889999999999999987642 112222 24457888999999
Q ss_pred EecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 418 VEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
|.|.... +|++|+.||.|++|.+.
T Consensus 288 w~p~~~~------------~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 288 WNPKVSN------------RLASGGDDGIVNFWELE 311 (312)
T ss_pred EcCCCCC------------ceeecCCCceEEEEEec
Confidence 9995443 89999999999999875
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=288.93 Aligned_cols=241 Identities=22% Similarity=0.351 Sum_probs=219.5
Q ss_pred cceeeeeeecccEEEEEec----CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEE
Q 012007 114 GLIGSIVRKEGHIYSLAAS----GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~----g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~v 187 (473)
.++.+|.+|.+.|.++.|. +..||||+.||+|++|+.. ..+..+.+|...|..++|+|+|++|+|++.|.+-++
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRl 287 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRL 287 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhh
Confidence 5678999999999998875 4489999999999999865 678899999999999999999999999999999999
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~ 267 (473)
||+.++....... ||...|.+++|.+||.++++|+.|..-+|||++++
T Consensus 288 WD~~tk~ElL~QE--------------------------------GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg 335 (459)
T KOG0272|consen 288 WDLETKSELLLQE--------------------------------GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTG 335 (459)
T ss_pred cccccchhhHhhc--------------------------------ccccccceeEecCCCceeeccCccchhheeecccC
Confidence 9999887544333 69999999999999999999999999999999999
Q ss_pred eeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc-CCCEEEEeCCC
Q 012007 268 KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSD 345 (473)
Q Consensus 268 ~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~d 345 (473)
+++..+.+|...|.++.|+|+| .+++|+.|++++|||++.. .....+.+|.+-|+.+.|+| .|.+|++++.|
T Consensus 336 r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r------~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD 409 (459)
T KOG0272|consen 336 RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR------SELYTIPAHSNLVSQVKYSPQEGYFLVTASYD 409 (459)
T ss_pred cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc------ccceecccccchhhheEecccCCeEEEEcccC
Confidence 9999999999999999999999 7999999999999999843 23788899999999999998 78999999999
Q ss_pred CcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEe
Q 012007 346 GLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWR 393 (473)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd 393 (473)
++++||..++. .+.+.+.||...|.++. +++.++++++.|+++++|.
T Consensus 410 ~t~kiWs~~~~-~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 410 NTVKIWSTRTW-SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cceeeecCCCc-ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999998874 55678999999997765 6799999999999999995
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=291.88 Aligned_cols=287 Identities=15% Similarity=0.307 Sum_probs=251.0
Q ss_pred cccceeeeeeecccEEEEEe---cCCEEEEeeCCCcEEEeeCC---ccccccccCcccEEEEEEeCCCCEEEEEeCCCeE
Q 012007 112 CNGLIGSIVRKEGHIYSLAA---SGDLLYTGSDSKNIRVWKNL---KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKI 185 (473)
Q Consensus 112 ~~~~~~~l~~h~~~V~~~~~---~g~~l~tg~~dg~i~vwd~~---~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i 185 (473)
...++.++.+|...|.++.+ .+.+|++|+.|+.|+||++. +.++++.+|..+|.+++|+.+|..+++++.|+.|
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL 282 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence 45678899999999999875 47899999999999999854 6789999999999999999999999999999999
Q ss_pred EEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCC-CEEEEEeCCCCEEEEEc
Q 012007 186 RIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRI 264 (473)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~s~dg~v~vwd~ 264 (473)
++||++++++...+. ....++|+.|+|++ +.+++|+.|+.|+.||+
T Consensus 283 KlwDtETG~~~~~f~---------------------------------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDi 329 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFH---------------------------------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDI 329 (503)
T ss_pred eeeccccceEEEEEe---------------------------------cCCCceeeecCCCCCcEEEEecCCCcEEEEec
Confidence 999999999877665 44568899999988 89999999999999999
Q ss_pred CCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC
Q 012007 265 SDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS 343 (473)
Q Consensus 265 ~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 343 (473)
++++.++++..|-+.|..+.|-+++ .+++.+.|+.++||+.+.. ..+......+.-...++..+|++.++++-+
T Consensus 330 Rs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~-----v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs 404 (503)
T KOG0282|consen 330 RSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIP-----VPIKNIADPEMHTMPCLTLHPNGKWFAAQS 404 (503)
T ss_pred cchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCC-----ccchhhcchhhccCcceecCCCCCeehhhc
Confidence 9999999999999999999999988 9999999999999998732 223334444555678899999999999999
Q ss_pred CCCcEEEEecCCcc--cccceeecCcceE----EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEE
Q 012007 344 SDGLVNFWECEKHL--SHGGVLRGHKMAV----LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLA 417 (473)
Q Consensus 344 ~dg~i~iwd~~~~~--~~~~~~~~~~~~v----~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~ 417 (473)
.|+.|.+|.+.... .....+.+|..+- ..++|||.+|++|..||.+.+||.++ .+.+..+.+|.+++..+.
T Consensus 405 ~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt---~kl~~~lkah~~~ci~v~ 481 (503)
T KOG0282|consen 405 MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT---TKLVSKLKAHDQPCIGVD 481 (503)
T ss_pred cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechh---hhhhhccccCCcceEEEE
Confidence 99999999875432 2234566776543 55788999999999999999999999 788999999999999999
Q ss_pred EecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 418 VEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
|+|.... .+|||+.||.|++|+
T Consensus 482 wHP~e~S------------kvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 482 WHPVEPS------------KVATCGWDGLIKIWD 503 (503)
T ss_pred ecCCCcc------------eeEecccCceeEecC
Confidence 9999876 799999999999996
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=264.10 Aligned_cols=284 Identities=23% Similarity=0.371 Sum_probs=241.9
Q ss_pred cceeeeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCC---ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEE
Q 012007 114 GLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL---KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIW 188 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~---~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw 188 (473)
..+..+.+|+|.|+.+.| +|.+||+||.|..|.+|++. +....+++|+++|..+.|.+|++.|++++.|.+|+.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 456678899999988765 58999999999999999865 4466788999999999999999999999999999999
Q ss_pred eCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCC-CEEEEEeCCCCEEEEEcCCC
Q 012007 189 KVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRISDC 267 (473)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~s~dg~v~vwd~~~~ 267 (473)
|+++++.....+ +|.+-|+.+.-..-| .++.+|+.|+++++||+++.
T Consensus 118 D~~tG~~~rk~k--------------------------------~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k 165 (338)
T KOG0265|consen 118 DAETGKRIRKHK--------------------------------GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK 165 (338)
T ss_pred ecccceeeehhc--------------------------------cccceeeecCccccCCeEEEecCCCceEEEEeeccc
Confidence 999998766554 388888888854434 46778899999999999998
Q ss_pred eeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC
Q 012007 268 KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG 346 (473)
Q Consensus 268 ~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg 346 (473)
.+++++. ....++++.|...+ .+++|+-|+.|++||++.. .....+.+|...|+.|..+++|.++.+-+.|.
T Consensus 166 ~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~------d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~ 238 (338)
T KOG0265|consen 166 EAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN------DGLYTLSGHADTITGLSLSRYGSFLLSNSMDN 238 (338)
T ss_pred chhhccc-cceeEEEEEecccccceeeccccCceeeeccccC------cceEEeecccCceeeEEeccCCCccccccccc
Confidence 8888775 45679999998776 9999999999999999732 34678999999999999999999999999999
Q ss_pred cEEEEecCCc---ccccceeecCcce------EEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEE
Q 012007 347 LVNFWECEKH---LSHGGVLRGHKMA------VLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLA 417 (473)
Q Consensus 347 ~i~iwd~~~~---~~~~~~~~~~~~~------v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~ 417 (473)
++++||++-. .....++.+|.-. -.++++++..+.+|+.|..+++||... ...+..+.||.+.|++++
T Consensus 239 tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~---r~~lyklpGh~gsvn~~~ 315 (338)
T KOG0265|consen 239 TVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS---RRILYKLPGHYGSVNEVD 315 (338)
T ss_pred eEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc---ccEEEEcCCcceeEEEee
Confidence 9999999742 2223455554322 256778899999999999999999988 688999999999999999
Q ss_pred EecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 418 VEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
|+|... +|.+++.|++|.+=++
T Consensus 316 Fhp~e~-------------iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 316 FHPTEP-------------IILSCSSDKTIYLGEI 337 (338)
T ss_pred ecCCCc-------------EEEEeccCceeEeecc
Confidence 999998 9999999999987443
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=276.57 Aligned_cols=283 Identities=23% Similarity=0.337 Sum_probs=243.4
Q ss_pred eeeecccEEEEEecC---CEEEEeeCCCcEEEeeCCc------cccccc------c----CcccEEEEEEeCCCCEEEEE
Q 012007 119 IVRKEGHIYSLAASG---DLLYTGSDSKNIRVWKNLK------EFSGFK------S----NSGLVKAIIISGDSNKIFTG 179 (473)
Q Consensus 119 l~~h~~~V~~~~~~g---~~l~tg~~dg~i~vwd~~~------~~~~~~------~----h~~~V~~l~~s~~~~~l~s~ 179 (473)
+.+|+..|.+.+|++ .++++|+.|-+.++|++.. ....++ + .+..|++++|+.+|..||+|
T Consensus 174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG 253 (524)
T KOG0273|consen 174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG 253 (524)
T ss_pred eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe
Confidence 334999999988873 3899999999999998653 111121 1 23679999999999999999
Q ss_pred eCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCE
Q 012007 180 HQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTL 259 (473)
Q Consensus 180 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v 259 (473)
..||.+++|+.......... .|.++|.++.|+..|++|++++.|+++
T Consensus 254 ~~~G~~riw~~~G~l~~tl~---------------------------------~HkgPI~slKWnk~G~yilS~~vD~tt 300 (524)
T KOG0273|consen 254 SEDGEARIWNKDGNLISTLG---------------------------------QHKGPIFSLKWNKKGTYILSGGVDGTT 300 (524)
T ss_pred ecCcEEEEEecCchhhhhhh---------------------------------ccCCceEEEEEcCCCCEEEeccCCccE
Confidence 99999999998765432211 299999999999999999999999999
Q ss_pred EEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEE
Q 012007 260 KVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVV 339 (473)
Q Consensus 260 ~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l 339 (473)
.+||..++...+.+..|..+-..+.|-.+..+++++.|+.|+|+.+. ...+..++.+|.+.|.+|.|+|.+.+|
T Consensus 301 ilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~------~~~P~~t~~GH~g~V~alk~n~tg~LL 374 (524)
T KOG0273|consen 301 ILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVG------EDRPVKTFIGHHGEVNALKWNPTGSLL 374 (524)
T ss_pred EEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEec------CCCcceeeecccCceEEEEECCCCceE
Confidence 99999999999999999988888999988899999999999999985 344567888899999999999999999
Q ss_pred EEeCCCCcEEEEecCCcccccceeecCcceEEEEEec-----------CCEEEEEeCCCcEEEEecCCCCceeEEEEecC
Q 012007 340 YCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA-----------GNLVFSGSADRNICLWRREESGAHSCLAVLTG 408 (473)
Q Consensus 340 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 408 (473)
++++.|++++||...... ....+.+|...|..+.+. +..+++++.|++|++||+.. ..++..+..
T Consensus 375 aS~SdD~TlkiWs~~~~~-~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~---gv~i~~f~k 450 (524)
T KOG0273|consen 375 ASCSDDGTLKIWSMGQSN-SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES---GVPIHTLMK 450 (524)
T ss_pred EEecCCCeeEeeecCCCc-chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC---CceeEeecc
Confidence 999999999999987643 335677888888776542 56899999999999999999 688999999
Q ss_pred CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 409 HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 409 h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
|+.+|.+++|+|+++ ++|+|+.||.|.+|+++.++.
T Consensus 451 H~~pVysvafS~~g~-------------ylAsGs~dg~V~iws~~~~~l 486 (524)
T KOG0273|consen 451 HQEPVYSVAFSPNGR-------------YLASGSLDGCVHIWSTKTGKL 486 (524)
T ss_pred CCCceEEEEecCCCc-------------EEEecCCCCeeEeccccchhe
Confidence 999999999999999 999999999999999987753
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=277.35 Aligned_cols=276 Identities=22% Similarity=0.335 Sum_probs=237.7
Q ss_pred EEEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecc
Q 012007 126 IYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGS 203 (473)
Q Consensus 126 V~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 203 (473)
+..+.++|+.|++|+..|.+.+|+.. .....++.|..+|.++.|++++.++++|+.+|.|++|+..-........
T Consensus 101 ~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~a--- 177 (464)
T KOG0284|consen 101 VVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQA--- 177 (464)
T ss_pred eEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhH---
Confidence 44556779999999999999999964 2334567899999999999999999999999999999986554322211
Q ss_pred ccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEE
Q 012007 204 LPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV 283 (473)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l 283 (473)
.|...|.+++|+|+...|++++.||+|+|||....+....+.+|.-.|.++
T Consensus 178 -----------------------------hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv 228 (464)
T KOG0284|consen 178 -----------------------------HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV 228 (464)
T ss_pred -----------------------------hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence 266999999999999999999999999999999999999999999999999
Q ss_pred EEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccce
Q 012007 284 VAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV 362 (473)
Q Consensus 284 ~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 362 (473)
.|+|.. +|++|+.|..|++||.+++. .+..+..|...|..+.|++++++|++++.|..+++||+++. .....
T Consensus 229 dWHP~kgLiasgskDnlVKlWDprSg~------cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m-kEl~~ 301 (464)
T KOG0284|consen 229 DWHPTKGLIASGSKDNLVKLWDPRSGS------CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM-KELFT 301 (464)
T ss_pred ccCCccceeEEccCCceeEeecCCCcc------hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh-HHHHH
Confidence 999986 99999999999999998543 35778899999999999999999999999999999999953 44467
Q ss_pred eecCcceEEEEEec---CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEE
Q 012007 363 LRGHKMAVLCLAAA---GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVY 439 (473)
Q Consensus 363 ~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~ 439 (473)
+++|...+.++.+. ..+|.+|+.||.|..|.+... ......-.+|...|++++|+|-|. +|+
T Consensus 302 ~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~--~p~~~i~~AHd~~iwsl~~hPlGh-------------il~ 366 (464)
T KOG0284|consen 302 YRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE--EPLGEIPPAHDGEIWSLAYHPLGH-------------ILA 366 (464)
T ss_pred hhcchhhheeeccccccccceeeccCCCceEEEecccc--ccccCCCcccccceeeeeccccce-------------eEe
Confidence 88999999998654 789999999999999998842 223333458999999999999998 999
Q ss_pred EeeCCCcEEEEEcCCC
Q 012007 440 SGSLDKSVKVWRVSEH 455 (473)
Q Consensus 440 s~s~Dg~v~iW~i~~~ 455 (473)
+|+.|.++++|.-...
T Consensus 367 tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 367 TGSNDRTVRFWTRNRP 382 (464)
T ss_pred ecCCCcceeeeccCCC
Confidence 9999999999986543
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-39 Score=273.49 Aligned_cols=277 Identities=25% Similarity=0.446 Sum_probs=240.8
Q ss_pred ecccEEEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEE
Q 012007 122 KEGHIYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHK 199 (473)
Q Consensus 122 h~~~V~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 199 (473)
....|+|+..|.+.+++|..|.+|+|||.. ..+..+.+|++.|.|+.| +.+.|++|+.|.+|+|||+++++.....
T Consensus 196 ~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tl 273 (499)
T KOG0281|consen 196 NSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTL 273 (499)
T ss_pred cCCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHH
Confidence 456799999999999999999999999965 567789999999999999 4559999999999999999999765433
Q ss_pred eeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe---eeEEeecC
Q 012007 200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK---CLESINAH 276 (473)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~---~~~~~~~~ 276 (473)
++|.++|..+.|+. .++++++.|.++.+||+.... +.+.+.+|
T Consensus 274 --------------------------------ihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGH 319 (499)
T KOG0281|consen 274 --------------------------------IHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGH 319 (499)
T ss_pred --------------------------------hhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhh
Confidence 25999999999964 799999999999999997654 34567799
Q ss_pred CCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCc
Q 012007 277 DDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH 356 (473)
Q Consensus 277 ~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~ 356 (473)
...|+.+.|... ++++++.|.+|++|++. ....+.++.+|...|.|+.+ .++++++|++|.+|++||++.+
T Consensus 320 rAaVNvVdfd~k-yIVsASgDRTikvW~~s------t~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G 390 (499)
T KOG0281|consen 320 RAAVNVVDFDDK-YIVSASGDRTIKVWSTS------TCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG 390 (499)
T ss_pred hhheeeeccccc-eEEEecCCceEEEEecc------ceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc
Confidence 999999998644 99999999999999985 44467889999999999988 4889999999999999999987
Q ss_pred ccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCce------eEEEEecCCCCceeEEEEecCCCCCccccc
Q 012007 357 LSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAH------SCLAVLTGHTGPVKCLAVEEDRDHDHEYHQ 430 (473)
Q Consensus 357 ~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~ 430 (473)
..+ ..+.||..-|.|+.++.+.+++|+.||+|++||+..+... -|+..+..|++.|..+.|..-
T Consensus 391 ~cL-RvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f--------- 460 (499)
T KOG0281|consen 391 ACL-RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF--------- 460 (499)
T ss_pred HHH-HHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecce---------
Confidence 554 6889999999999999999999999999999999874322 366777889999999999865
Q ss_pred CCCccEEEEEeeCCCcEEEEEcCCCCCCc
Q 012007 431 KGDQRWTVYSGSLDKSVKVWRVSEHAPDL 459 (473)
Q Consensus 431 ~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~ 459 (473)
.+++++.|.+|.|||+.++.+..
T Consensus 461 ------qIvsssHddtILiWdFl~~~~~~ 483 (499)
T KOG0281|consen 461 ------QIISSSHDDTILIWDFLNGPPSA 483 (499)
T ss_pred ------EEEeccCCCeEEEEEcCCCCccc
Confidence 68999999999999998876653
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=271.73 Aligned_cols=286 Identities=20% Similarity=0.354 Sum_probs=238.4
Q ss_pred ceeeeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCC-----ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEE
Q 012007 115 LIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL-----KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~-----~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~v 187 (473)
-...|..|.+.|+-+.| +|++||+|+.|.+..+|++. +...++.+|..+|..|.|+||.++|++|+.|..+++
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 35678889999988776 49999999999999999743 446788999999999999999999999999999999
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~ 267 (473)
||+.++........ ++...+.+++|.|||..+++|+.|+++..||+. |
T Consensus 296 wDv~tgd~~~~y~~-------------------------------~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-g 343 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPS-------------------------------GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-G 343 (519)
T ss_pred ccCCcchhhhhccc-------------------------------CcCCCcceeEEccCCceeEecCCCCcEEEecCC-c
Confidence 99999876544332 255789999999999999999999999999984 4
Q ss_pred eeeEEeecC-CCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC
Q 012007 268 KCLESINAH-DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD 345 (473)
Q Consensus 268 ~~~~~~~~~-~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d 345 (473)
..+..+++- ...|.+++..+|| .+++.+.|..|++++.+.... ..+.....+|++++++.+++++++.-.+
T Consensus 344 n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d-------r~lise~~~its~~iS~d~k~~LvnL~~ 416 (519)
T KOG0293|consen 344 NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD-------RGLISEEQPITSFSISKDGKLALVNLQD 416 (519)
T ss_pred chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh-------hccccccCceeEEEEcCCCcEEEEEccc
Confidence 555555543 3568999999998 888888999999999874221 1133446789999999999999999999
Q ss_pred CcEEEEecCCcccccceeecCcceEE----EEEe-cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEec
Q 012007 346 GLVNFWECEKHLSHGGVLRGHKMAVL----CLAA-AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEE 420 (473)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~~~~~~v~----~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~ 420 (473)
..|++||++. ......+.||+..-. ||.. +..++++|++|+.|+||+..+ .+++.++.||...|++++|+|
T Consensus 417 qei~LWDl~e-~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s---gkll~~LsGHs~~vNcVswNP 492 (519)
T KOG0293|consen 417 QEIHLWDLEE-NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS---GKLLAVLSGHSKTVNCVSWNP 492 (519)
T ss_pred CeeEEeecch-hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccC---CceeEeecCCcceeeEEecCC
Confidence 9999999995 445556677775543 3332 357999999999999999998 689999999999999999999
Q ss_pred CCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 421 DRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
...+ ++|++|+||+||||.....
T Consensus 493 ~~p~------------m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 493 ADPE------------MFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CCHH------------HhhccCCCCeEEEecCCcc
Confidence 9886 8999999999999987754
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=267.98 Aligned_cols=329 Identities=20% Similarity=0.291 Sum_probs=255.4
Q ss_pred cceeeeeeecccEEEEE--ecCCEEEEeeCCCcEEEeeCC--ccccccc---cCcccEEEEEEeCCCCEEEEEeCCCeEE
Q 012007 114 GLIGSIVRKEGHIYSLA--ASGDLLYTGSDSKNIRVWKNL--KEFSGFK---SNSGLVKAIIISGDSNKIFTGHQDGKIR 186 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~--~~g~~l~tg~~dg~i~vwd~~--~~~~~~~---~h~~~V~~l~~s~~~~~l~s~~~dg~i~ 186 (473)
.+..++..|..-|.|+. |||.++|+.+.||+|.+||-. +.+..+. +|.+.|.+|.|+||++.++|++.|.+++
T Consensus 181 KFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~K 260 (603)
T KOG0318|consen 181 KFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIK 260 (603)
T ss_pred eeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEE
Confidence 46677888999999876 569999999999999999843 4444554 8999999999999999999999999999
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEe-----------ec-ceeeEeeccCCeeEEEEcCCCCEEEEEe
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVR-----------RN-RSVLKIRHYDAVSCLSLNAEQGLLYSGS 254 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~v~~l~~~~~~~~l~s~s 254 (473)
|||+.+.++......... .....+........++.+. .. ......+|...|+++..++++++|++|+
T Consensus 261 IWdVs~~slv~t~~~~~~-v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgs 339 (603)
T KOG0318|consen 261 IWDVSTNSLVSTWPMGST-VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGS 339 (603)
T ss_pred EEEeeccceEEEeecCCc-hhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeec
Confidence 999999987776665543 1122222222222222211 11 1234558999999999999999999999
Q ss_pred CCCCEEEEEcCCCeeeEEe-ecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcce------------------e
Q 012007 255 WDKTLKVWRISDCKCLESI-NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKH------------------C 315 (473)
Q Consensus 255 ~dg~v~vwd~~~~~~~~~~-~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~------------------~ 315 (473)
.||.|.-|+..++..-+.. +.|...|.+++....+.+++++.|.++++.++...+-.... .
T Consensus 340 yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~ 419 (603)
T KOG0318|consen 340 YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGT 419 (603)
T ss_pred cCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCE
Confidence 9999999999988776554 67999999999988889999999999999977432211000 0
Q ss_pred e-------eeeecc--------CCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcc-cccceeecCcceEEEEE--ecC
Q 012007 316 L-------AQVLLK--------HENAVTALAVNQESAVVYCGSSDGLVNFWECEKHL-SHGGVLRGHKMAVLCLA--AAG 377 (473)
Q Consensus 316 ~-------~~~~~~--------~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~--~~~ 377 (473)
. +..+.. -.....+++++|++..+++|+.||.|+||.+.... .....+..|..++++++ ||+
T Consensus 420 avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~ 499 (603)
T KOG0318|consen 420 AVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDG 499 (603)
T ss_pred EEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCC
Confidence 0 001111 12345789999999999999999999999998754 33346677888887665 679
Q ss_pred CEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 378 NLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 378 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
.|||+|...+.+.+||+.+... ....+.-|+..|.+++|+|+.. ++|||+.|-.|.||++..+..
T Consensus 500 ~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWsP~n~-------------~vATGSlDt~Viiysv~kP~~ 564 (603)
T KOG0318|consen 500 AYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAWSPNNK-------------LVATGSLDTNVIIYSVKKPAK 564 (603)
T ss_pred cEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEeCCCce-------------EEEeccccceEEEEEccChhh
Confidence 9999999999999999998432 4455667999999999999998 899999999999999988765
Q ss_pred C
Q 012007 458 D 458 (473)
Q Consensus 458 ~ 458 (473)
.
T Consensus 565 ~ 565 (603)
T KOG0318|consen 565 H 565 (603)
T ss_pred h
Confidence 4
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=264.67 Aligned_cols=282 Identities=22% Similarity=0.356 Sum_probs=246.2
Q ss_pred eeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q 012007 116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVS 191 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~ 191 (473)
...+.+|...|+.+-+. -.+++++++|++|++||.. +....+++|...|..|+|+..|++|++++.|=.+++||.+
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~ 180 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFD 180 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHH
Confidence 45566788888887665 4578888899999999965 5678899999999999999999999999999889999987
Q ss_pred CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeE
Q 012007 192 RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE 271 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~ 271 (473)
+..... ....+|...|.+++|-|.|.++++++.|.+|+.|++.++-++.
T Consensus 181 ~~~~c~-------------------------------ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~ 229 (406)
T KOG0295|consen 181 TFFRCI-------------------------------KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVK 229 (406)
T ss_pred HHHHHH-------------------------------HHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEE
Confidence 632111 1122589999999999999999999999999999999999999
Q ss_pred EeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC---------------
Q 012007 272 SINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE--------------- 335 (473)
Q Consensus 272 ~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--------------- 335 (473)
++.+|...|..+....|| ++++++.|.+|++|-+... .....+..|+-+|.+++|-|.
T Consensus 230 t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~------~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~ 303 (406)
T KOG0295|consen 230 TFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK------QCKAELREHEHPVECIAWAPESSYPSISEATGSTNG 303 (406)
T ss_pred eccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccc------hhhhhhhccccceEEEEecccccCcchhhccCCCCC
Confidence 999999999999999999 7889999999999988632 234667889999999998653
Q ss_pred CCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEec--CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCce
Q 012007 336 SAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPV 413 (473)
Q Consensus 336 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V 413 (473)
+.++.+++.|++|++||+.++..+ ..+.+|...|..+++. |+||+++.+|+++++||+++ .+|+..+..|..-|
T Consensus 304 ~~~l~s~SrDktIk~wdv~tg~cL-~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~---~~cmk~~~ah~hfv 379 (406)
T KOG0295|consen 304 GQVLGSGSRDKTIKIWDVSTGMCL-FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKN---LQCMKTLEAHEHFV 379 (406)
T ss_pred ccEEEeecccceEEEEeccCCeEE-EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecc---ceeeeccCCCccee
Confidence 258999999999999999997554 6788999999777655 99999999999999999999 78999999999999
Q ss_pred eEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 414 KCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
++++|+.+.. +++||+-|.++++|.
T Consensus 380 t~lDfh~~~p-------------~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 380 TSLDFHKTAP-------------YVVTGSVDQTVKVWE 404 (406)
T ss_pred EEEecCCCCc-------------eEEeccccceeeeee
Confidence 9999999988 899999999999996
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=247.50 Aligned_cols=270 Identities=20% Similarity=0.362 Sum_probs=232.9
Q ss_pred ccceeeeeeecccEEEEE--ecCCEEEEeeCCCcEEEeeCC----ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEE
Q 012007 113 NGLIGSIVRKEGHIYSLA--ASGDLLYTGSDSKNIRVWKNL----KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIR 186 (473)
Q Consensus 113 ~~~~~~l~~h~~~V~~~~--~~g~~l~tg~~dg~i~vwd~~----~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~ 186 (473)
+...+++...++.|..+. +++++||+|+. ..||+||+. ..+..+.+|++.|+++.|..+|++++||+.||+++
T Consensus 30 G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~k 108 (311)
T KOG0315|consen 30 GICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVK 108 (311)
T ss_pred CeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEE
Confidence 445677777778887655 67889999986 589999965 46889999999999999999999999999999999
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD 266 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~ 266 (473)
|||+....+.... .|..+|+++..+|+...|++|..+|.|++||+.+
T Consensus 109 IWdlR~~~~qR~~---------------------------------~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~ 155 (311)
T KOG0315|consen 109 IWDLRSLSCQRNY---------------------------------QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGE 155 (311)
T ss_pred EEeccCcccchhc---------------------------------cCCCCcceEEecCCcceEEeecCCCcEEEEEccC
Confidence 9999875443333 2889999999999999999999999999999998
Q ss_pred CeeeEEe-ecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC
Q 012007 267 CKCLESI-NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS 344 (473)
Q Consensus 267 ~~~~~~~-~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~ 344 (473)
..+.+.+ ......|.++...+++ +++.+...|...+|++-.........++..+..|+.-+..+.++|++++|++++.
T Consensus 156 ~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss 235 (311)
T KOG0315|consen 156 NSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS 235 (311)
T ss_pred CccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC
Confidence 8776665 3456789999999999 8888899999999999876655667777889999999999999999999999999
Q ss_pred CCcEEEEecCCcccccceeecCcceE--EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEe
Q 012007 345 DGLVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVE 419 (473)
Q Consensus 345 dg~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~ 419 (473)
|.+++||+.++.......+.+|...+ ..|+.+|.||++|+.|+.+++|++.. .+.+..+.+|..+..|++..
T Consensus 236 dktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~---~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 236 DKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSA---GKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred CceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccccc---CceeeecCCcccccEEEEee
Confidence 99999999998766667888998777 45666799999999999999999998 57788999998888888764
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=289.86 Aligned_cols=273 Identities=24% Similarity=0.380 Sum_probs=226.4
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEE-eecceeeEeeccCCee
Q 012007 161 SGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEV-RRNRSVLKIRHYDAVS 239 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~ 239 (473)
...++|..|++|+.+||.|..|..|++|.+...+.........+.... ....... ....+. .........+|.++|.
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d-~~sad~~-~~~~D~~~~~~~~~L~GH~GPVy 455 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNID-TESADVD-VDMLDDDSSGTSRTLYGHSGPVY 455 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhcccc-ccccchh-hhhccccCCceeEEeecCCCcee
Confidence 456999999999999999999999999999864432222111111110 0000001 112211 1222334778999999
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeee
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQ 318 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 318 (473)
.+.|+|+.++|+++++|++|++|.+.+..++-.+++|..+|+++.|+|.| ++++++.|++.++|... ...+..
T Consensus 456 g~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d------~~~PlR 529 (707)
T KOG0263|consen 456 GCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD------HNKPLR 529 (707)
T ss_pred eeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc------cCCchh
Confidence 99999999999999999999999999999999999999999999999999 89999999999999986 234567
Q ss_pred eeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEE--EecCCEEEEEeCCCcEEEEecCC
Q 012007 319 VLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCL--AAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 319 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
.+.+|.+.|.|+.|+|+..|+++|+.|.+|++||..++.. ...+.||..+|.++ +|+|++|++|+.||.|.+||+.+
T Consensus 530 ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~-VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 530 IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS-VRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred hhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE-EEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 8899999999999999999999999999999999998765 46889999998665 56799999999999999999999
Q ss_pred CCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 397 SGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 397 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
...+..+.+|++.|.+|.|+.++. +||+||.|.+|++||+......
T Consensus 609 ---~~~v~~l~~Ht~ti~SlsFS~dg~-------------vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 609 ---GSLVKQLKGHTGTIYSLSFSRDGN-------------VLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred ---CcchhhhhcccCceeEEEEecCCC-------------EEEecCCCCeEEEEEchhhccc
Confidence 578889999999999999999999 9999999999999999876544
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=261.65 Aligned_cols=274 Identities=20% Similarity=0.313 Sum_probs=238.0
Q ss_pred cccEEEEEec--CCEEEEeeCCCcEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEE
Q 012007 123 EGHIYSLAAS--GDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHK 199 (473)
Q Consensus 123 ~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 199 (473)
...|++++|+ |.+||+|+.||.++||+.. ..+.++..|+++|.++.|+.+|+||++++.||++.+||..++....++
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF 314 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee
Confidence 3568999997 9999999999999999965 667788899999999999999999999999999999999988876666
Q ss_pred eeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCc
Q 012007 200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDA 279 (473)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~ 279 (473)
.. |..+-..+.|-. ...+++++.|+.|+|+.+....++.++.+|.+.
T Consensus 315 ~~--------------------------------~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~ 361 (524)
T KOG0273|consen 315 EF--------------------------------HSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGE 361 (524)
T ss_pred ee--------------------------------ccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCc
Confidence 54 555556788864 457899999999999999999999999999999
Q ss_pred eeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC---------CEEEEeCCCCcEE
Q 012007 280 INSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES---------AVVYCGSSDGLVN 349 (473)
Q Consensus 280 v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---------~~l~~~~~dg~i~ 349 (473)
|+++.|.|.+ +|++++.|++++||.... ......+..|...|..+.|+|.| ..+++++.|++|+
T Consensus 362 V~alk~n~tg~LLaS~SdD~TlkiWs~~~------~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~ 435 (524)
T KOG0273|consen 362 VNALKWNPTGSLLASCSDDGTLKIWSMGQ------SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVK 435 (524)
T ss_pred eEEEEECCCCceEEEecCCCeeEeeecCC------CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEE
Confidence 9999999998 899999999999999752 22356788999999999999965 4789999999999
Q ss_pred EEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcc
Q 012007 350 FWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHE 427 (473)
Q Consensus 350 iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~ 427 (473)
+||+..+... ..+..|..+|.++++ +|+|+|+|+.||.|.+|+..+ .+.++.+.+ .+.|..++|+.++.
T Consensus 436 lwdv~~gv~i-~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~---~~l~~s~~~-~~~Ifel~Wn~~G~---- 506 (524)
T KOG0273|consen 436 LWDVESGVPI-HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT---GKLVKSYQG-TGGIFELCWNAAGD---- 506 (524)
T ss_pred EEEccCCcee-EeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccc---hheeEeecC-CCeEEEEEEcCCCC----
Confidence 9999987554 567789999977765 599999999999999999998 577777766 56699999999997
Q ss_pred cccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 428 YHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 428 ~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
.|..+-.|+.+++-|+.
T Consensus 507 ---------kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 507 ---------KLGACASDGSVCVLDLR 523 (524)
T ss_pred ---------EEEEEecCCCceEEEec
Confidence 78888889999999874
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=277.30 Aligned_cols=329 Identities=21% Similarity=0.367 Sum_probs=258.7
Q ss_pred cceeeeeeecccEEEEEecCC----EEEEeeCCCcEEEeeCC---ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEE
Q 012007 114 GLIGSIVRKEGHIYSLAASGD----LLYTGSDSKNIRVWKNL---KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIR 186 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~g~----~l~tg~~dg~i~vwd~~---~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~ 186 (473)
.....|.||.|.|.++.|.+. +|++|..|++|++||.. .++..+..|...|++++|++|+..+++++.|..+.
T Consensus 138 ~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~ 217 (775)
T KOG0319|consen 138 YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVII 217 (775)
T ss_pred EEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEE
Confidence 457789999999999998744 68999999999999976 34678889999999999999999999999999999
Q ss_pred EEeCCCCCeeeEEe------------------------ecc-------------------cc---ccce---------eE
Q 012007 187 IWKVSRKNASVHKR------------------------VGS-------------------LP---TFKD---------YV 211 (473)
Q Consensus 187 vwd~~~~~~~~~~~------------------------~~~-------------------~~---~~~~---------~~ 211 (473)
|||+...+...... .+. .+ .... ++
T Consensus 218 vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l 297 (775)
T KOG0319|consen 218 VWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLL 297 (775)
T ss_pred EeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceE
Confidence 99984432111000 000 00 0000 00
Q ss_pred --------------------------------------------eecCCCcceEEEeecceeeEeeccCCeeEEEEcCCC
Q 012007 212 --------------------------------------------KSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQ 247 (473)
Q Consensus 212 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 247 (473)
.+......+.........+..+|.+.|.++....+|
T Consensus 298 ~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g 377 (775)
T KOG0319|consen 298 LVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG 377 (775)
T ss_pred EEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC
Confidence 000000011122222334556899999999966778
Q ss_pred CEEEEEeCCCCEEEEEcCCCe----eeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeee----
Q 012007 248 GLLYSGSWDKTLKVWRISDCK----CLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLA---- 317 (473)
Q Consensus 248 ~~l~s~s~dg~v~vwd~~~~~----~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~---- 317 (473)
.+|++|+.|.++++|.++++. ++....+|...|.+++++..+ +|++++.|++|++|++..... ......
T Consensus 378 ~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~-~~~~~~~~~~ 456 (775)
T KOG0319|consen 378 DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKE-TAFPIVLTCR 456 (775)
T ss_pred cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccc-ccccceehhh
Confidence 899999999999999885443 345567899999999997766 899999999999999975222 111222
Q ss_pred eeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEec--CCEEEEEeCCCcEEEEecC
Q 012007 318 QVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRRE 395 (473)
Q Consensus 318 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~ 395 (473)
.....|...|++++++|+..++++|+.|.+.+||+++. ..+...+.||...+.|++|. .+.+++++.|++|+||.+.
T Consensus 457 ~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is 535 (775)
T KOG0319|consen 457 YTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS 535 (775)
T ss_pred HHHHhhcccccceEecCCCceEEecccccceeeecccC-ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEec
Confidence 24568999999999999999999999999999999994 56678999999999888876 5699999999999999999
Q ss_pred CCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 396 ESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 396 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
+ ..|+.++.||...|..+.|-.++. .|+|++.||-|++|++.+......
T Consensus 536 ~---fSClkT~eGH~~aVlra~F~~~~~-------------qliS~~adGliKlWnikt~eC~~t 584 (775)
T KOG0319|consen 536 T---FSCLKTFEGHTSAVLRASFIRNGK-------------QLISAGADGLIKLWNIKTNECEMT 584 (775)
T ss_pred c---ceeeeeecCccceeEeeeeeeCCc-------------EEEeccCCCcEEEEeccchhhhhh
Confidence 9 899999999999999999999998 899999999999999998765544
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=245.78 Aligned_cols=252 Identities=22% Similarity=0.355 Sum_probs=209.4
Q ss_pred ccccccCcccEEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEe
Q 012007 154 FSGFKSNSGLVKAIIISGD-SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKI 232 (473)
Q Consensus 154 ~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (473)
...+++|++.|+.++..+. -..|++++.|.++.+|++...+...-. ....+.
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~---------------------------~~r~~~ 60 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV---------------------------PVRRLT 60 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCc---------------------------eeeeee
Confidence 3468899999999999876 468899999999999999876322100 112233
Q ss_pred eccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCC
Q 012007 233 RHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 233 ~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
||...|..+..+++|++.+++++|+++++||+.+++..+.|.+|...|.++++++++ ++++|+.|.+|++|++..
T Consensus 61 GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g---- 136 (315)
T KOG0279|consen 61 GHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG---- 136 (315)
T ss_pred ccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc----
Confidence 699999999999999999999999999999999999999999999999999999998 999999999999999852
Q ss_pred cceeeeeeec-cCCccEEEEEEccC--CCEEEEeCCCCcEEEEecCCcccccceeecCcceEE--EEEecCCEEEEEeCC
Q 012007 312 TKHCLAQVLL-KHENAVTALAVNQE--SAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVL--CLAAAGNLVFSGSAD 386 (473)
Q Consensus 312 ~~~~~~~~~~-~~~~~v~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~s~~~d 386 (473)
.+...... .+...|.|+.|+|+ ..+|++++.|++|++||+++. ++...+.+|...+. .++|||.+.++|+.|
T Consensus 137 --~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-~l~~~~~gh~~~v~t~~vSpDGslcasGgkd 213 (315)
T KOG0279|consen 137 --VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-QLRTTFIGHSGYVNTVTVSPDGSLCASGGKD 213 (315)
T ss_pred --cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc-chhhccccccccEEEEEECCCCCEEecCCCC
Confidence 22222222 23889999999997 689999999999999999974 55567788888775 456899999999999
Q ss_pred CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 387 RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 387 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
|.+.+||++. .+.+..+ +|...|.+++|+|+.. .++...+-.|+|||+.....
T Consensus 214 g~~~LwdL~~---~k~lysl-~a~~~v~sl~fspnry--------------wL~~at~~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 214 GEAMLWDLNE---GKNLYSL-EAFDIVNSLCFSPNRY--------------WLCAATATSIKIWDLESKAV 266 (315)
T ss_pred ceEEEEEccC---CceeEec-cCCCeEeeEEecCCce--------------eEeeccCCceEEEeccchhh
Confidence 9999999998 4556665 5788999999999974 55555666799999987654
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=284.50 Aligned_cols=285 Identities=25% Similarity=0.466 Sum_probs=238.1
Q ss_pred eeeeeee-cccEEEE--EecCCEEEEeeCCCcEEEeeCC--c--cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEE
Q 012007 116 IGSIVRK-EGHIYSL--AASGDLLYTGSDSKNIRVWKNL--K--EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIW 188 (473)
Q Consensus 116 ~~~l~~h-~~~V~~~--~~~g~~l~tg~~dg~i~vwd~~--~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw 188 (473)
...+.+| ...|.++ +++|+++++++.|+.+++|+.. + ....+.+|...|.+++|+|+++++++|+.|++|+||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 4445454 4556665 4569999999999999999863 3 455668899999999999999999999999999999
Q ss_pred eCCCC-CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 012007 189 KVSRK-NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (473)
Q Consensus 189 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~ 267 (473)
|+... ....... +|...|++++|+|+++++++|+.|++|+|||++++
T Consensus 231 d~~~~~~~~~~l~--------------------------------gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~ 278 (456)
T KOG0266|consen 231 DLKDDGRNLKTLK--------------------------------GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG 278 (456)
T ss_pred eccCCCeEEEEec--------------------------------CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC
Confidence 99433 3322222 59999999999999999999999999999999999
Q ss_pred eeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCc--cEEEEEEccCCCEEEEeCC
Q 012007 268 KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHEN--AVTALAVNQESAVVYCGSS 344 (473)
Q Consensus 268 ~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~v~~l~~~~~~~~l~~~~~ 344 (473)
+++..+.+|.+.|+++++++++ +|++++.|+.|++||+..+... ....+..+.. .++++.|+|++.++++++.
T Consensus 279 ~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~ 354 (456)
T KOG0266|consen 279 ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL----CLKLLSGAENSAPVTSVQFSPNGKYLLSASL 354 (456)
T ss_pred eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee----eeecccCCCCCCceeEEEECCCCcEEEEecC
Confidence 9999999999999999999998 8889999999999999854321 2334444444 5999999999999999999
Q ss_pred CCcEEEEecCCcccccceeecCcceEEEE-----EecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCC-CCceeEEEE
Q 012007 345 DGLVNFWECEKHLSHGGVLRGHKMAVLCL-----AAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGH-TGPVKCLAV 418 (473)
Q Consensus 345 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~-----~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~V~~l~~ 418 (473)
|+.+++||+...... ....+|...+.|+ ...+.++++|+.|+.|++|++.+ ...+..+.+| ...|..+.+
T Consensus 355 d~~~~~w~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s---~~~~~~l~~h~~~~~~~~~~ 430 (456)
T KOG0266|consen 355 DRTLKLWDLRSGKSV-GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS---GGILQRLEGHSKAAVSDLSS 430 (456)
T ss_pred CCeEEEEEccCCcce-eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCc---cchhhhhcCCCCCceecccc
Confidence 999999999975444 4566666654443 34699999999999999999998 5778888999 899999999
Q ss_pred ecCCCCCcccccCCCccEEEEEee--CCCcEEEEEcC
Q 012007 419 EEDRDHDHEYHQKGDQRWTVYSGS--LDKSVKVWRVS 453 (473)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~l~s~s--~Dg~v~iW~i~ 453 (473)
++... ++++++ .|+.|++|...
T Consensus 431 ~~~~~-------------~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 431 HPTEN-------------LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCcC-------------eeeecCcCCCceEEEecCC
Confidence 99988 888888 79999999864
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=238.75 Aligned_cols=278 Identities=19% Similarity=0.352 Sum_probs=236.8
Q ss_pred eeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q 012007 116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVS 191 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~ 191 (473)
...|..|++.|.++.++ |+|.++++.|.+|++|+.. ..++++.+|...|..++.+.|+..+++|+.|..|.+||++
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence 45677899999999886 9999999999999999976 4678999999999999999999999999999999999999
Q ss_pred CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC--Cee
Q 012007 192 RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD--CKC 269 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~--~~~ 269 (473)
+++....+. +|...|+.+.|+.+...+++|+.|.++++||.++ .++
T Consensus 90 TGkv~Rr~r--------------------------------gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP 137 (307)
T KOG0316|consen 90 TGKVDRRFR--------------------------------GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP 137 (307)
T ss_pred cCeeeeecc--------------------------------cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCc
Confidence 998776665 5999999999999999999999999999999975 577
Q ss_pred eEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEE
Q 012007 270 LESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVN 349 (473)
Q Consensus 270 ~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~ 349 (473)
++.+....+.|.++... +..|++|+.||+++.||++.+.. .......+|++++|+++++.+++++.|++++
T Consensus 138 iQildea~D~V~Si~v~-~heIvaGS~DGtvRtydiR~G~l--------~sDy~g~pit~vs~s~d~nc~La~~l~stlr 208 (307)
T KOG0316|consen 138 IQILDEAKDGVSSIDVA-EHEIVAGSVDGTVRTYDIRKGTL--------SSDYFGHPITSVSFSKDGNCSLASSLDSTLR 208 (307)
T ss_pred cchhhhhcCceeEEEec-ccEEEeeccCCcEEEEEeeccee--------ehhhcCCcceeEEecCCCCEEEEeeccceee
Confidence 88888888999999875 45799999999999999985432 2223456899999999999999999999999
Q ss_pred EEecCCcccccceeecCcceEE----EEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCc-eeEEEEecCCCC
Q 012007 350 FWECEKHLSHGGVLRGHKMAVL----CLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGP-VKCLAVEEDRDH 424 (473)
Q Consensus 350 iwd~~~~~~~~~~~~~~~~~v~----~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~-V~~l~~~~~~~~ 424 (473)
+.|-.+++.+ ..+++|...-. |+.-....+++|++||.|++||+.. ...+..+..|... |++++++|...
T Consensus 209 LlDk~tGklL-~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd---~~~~sk~~~~~~v~v~dl~~hp~~~- 283 (307)
T KOG0316|consen 209 LLDKETGKLL-KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD---ETQISKLSVVSTVIVTDLSCHPTMD- 283 (307)
T ss_pred ecccchhHHH-HHhcccccceeeeeeeecccceeEEeccCCceEEEEEecc---ceeeeeeccCCceeEEeeecccCcc-
Confidence 9999987554 57788887653 4445578999999999999999998 5677777777777 89999999877
Q ss_pred CcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 425 DHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 425 ~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
-|+++. ++.+..|.-
T Consensus 284 ------------~f~~A~-~~~~~~~~~ 298 (307)
T KOG0316|consen 284 ------------DFITAT-GHGDLFWYQ 298 (307)
T ss_pred ------------ceeEec-CCceeceee
Confidence 355554 345677753
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=249.14 Aligned_cols=291 Identities=18% Similarity=0.266 Sum_probs=239.9
Q ss_pred ccceeeeeeecccEEEEE--ecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEE
Q 012007 113 NGLIGSIVRKEGHIYSLA--ASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIW 188 (473)
Q Consensus 113 ~~~~~~l~~h~~~V~~~~--~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw 188 (473)
..-+.++..|.+.|++++ |+.+++|||+.|..-.||+.. .....+.+|+..|+++.|+.+|.+||||+.+|.|+||
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 344678899999999987 457899999999999999865 5567788999999999999999999999999999999
Q ss_pred eCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe
Q 012007 189 KVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK 268 (473)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~ 268 (473)
+..++....... .....|.-+.|+|.+..|++|+.||.|.+|.+.++.
T Consensus 134 ~~stg~~~~~~~--------------------------------~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~ 181 (399)
T KOG0296|consen 134 KVSTGGEQWKLD--------------------------------QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA 181 (399)
T ss_pred EcccCceEEEee--------------------------------cccCceEEEEecccccEEEeecCCCcEEEEECCCcc
Confidence 999887544332 144567789999999999999999999999999988
Q ss_pred eeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCccee--------------------------------
Q 012007 269 CLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHC-------------------------------- 315 (473)
Q Consensus 269 ~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~-------------------------------- 315 (473)
..+.+.+|..++++=.|.|+| .++++..||+|++||+.++.......
T Consensus 182 ~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~ 261 (399)
T KOG0296|consen 182 LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVN 261 (399)
T ss_pred eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEc
Confidence 889999999999999999998 89999999999999987543210000
Q ss_pred -----eeee--------eccCCccEEEEEEc---cCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecC-C
Q 012007 316 -----LAQV--------LLKHENAVTALAVN---QESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAG-N 378 (473)
Q Consensus 316 -----~~~~--------~~~~~~~v~~l~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~ 378 (473)
.+.. ...+...+.++.+. ..-.+.|+|+.||+|.|||+..... +..-.|...|+.+.|.+ .
T Consensus 262 ~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~--R~~c~he~~V~~l~w~~t~ 339 (399)
T KOG0296|consen 262 NGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL--RHICEHEDGVTKLKWLNTD 339 (399)
T ss_pred cccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh--heeccCCCceEEEEEcCcc
Confidence 0000 00122223333333 3446789999999999999986432 34456888899999887 8
Q ss_pred EEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 379 LVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 379 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
+|++++.||.|+.||.++ ++++..+.||...|.+++++|+.+ +++|+|.|++.+|++++
T Consensus 340 ~l~t~c~~g~v~~wDaRt---G~l~~~y~GH~~~Il~f~ls~~~~-------------~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 340 YLLTACANGKVRQWDART---GQLKFTYTGHQMGILDFALSPQKR-------------LVVTVSDDNTALVFEVP 398 (399)
T ss_pred hheeeccCceEEeeeccc---cceEEEEecCchheeEEEEcCCCc-------------EEEEecCCCeEEEEecC
Confidence 999999999999999999 689999999999999999999998 89999999999999875
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=268.01 Aligned_cols=328 Identities=23% Similarity=0.376 Sum_probs=252.4
Q ss_pred cceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--cc--ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEE
Q 012007 114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KE--FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~--~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~v 187 (473)
.+.++..+|-..|.++.|+ .++|++|+.|-+++||... +. ...+.+|+..|-+.-|..+...|++.+.||.+.+
T Consensus 136 vl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~ 215 (893)
T KOG0291|consen 136 VLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFV 215 (893)
T ss_pred eEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEE
Confidence 4567788899999999985 7799999999999999765 33 4467899999999999999999999999999999
Q ss_pred EeCCCCCeeeEEe---------------------------e--cccc-ccceeEeecCCCcc-------------eEEEe
Q 012007 188 WKVSRKNASVHKR---------------------------V--GSLP-TFKDYVKSSVNPKN-------------YVEVR 224 (473)
Q Consensus 188 wd~~~~~~~~~~~---------------------------~--~~~~-~~~~~~~~~~~~~~-------------~~~~~ 224 (473)
|............ . ..+. .......+...+.. +.++.
T Consensus 216 W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP 295 (893)
T KOG0291|consen 216 WTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELP 295 (893)
T ss_pred EEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecC
Confidence 9887221100000 0 0000 00001111111110 01111
Q ss_pred ecceeeEee-ccCCeeEEEEcCCCCEEEEEeCC-CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEE
Q 012007 225 RNRSVLKIR-HYDAVSCLSLNAEQGLLYSGSWD-KTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVK 301 (473)
Q Consensus 225 ~~~~~~~~~-~~~~v~~l~~~~~~~~l~s~s~d-g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~ 301 (473)
....+.... ....|..++|+..|++|+.|+.. |.+.||+..+...+...++|...+++++++||| ++++|+.||.|+
T Consensus 296 ~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVK 375 (893)
T KOG0291|consen 296 DFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVK 375 (893)
T ss_pred CceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEE
Confidence 111111111 23578889999999999998754 799999999998899999999999999999998 899999999999
Q ss_pred EEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEec--CCE
Q 012007 302 VWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA--GNL 379 (473)
Q Consensus 302 vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 379 (473)
|||.. ... ...++..|...|+.+.|+..++.+++.+.||+|+.||+..................|++.| |.+
T Consensus 376 vWn~~-----Sgf-C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGel 449 (893)
T KOG0291|consen 376 VWNTQ-----SGF-CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGEL 449 (893)
T ss_pred EEecc-----Cce-EEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCE
Confidence 99986 233 4577889999999999999999999999999999999987666655554555555666655 999
Q ss_pred EEEEeCCC-cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 380 VFSGSADR-NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 380 l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
+++|+.|. .|.+|++++ ++.+..+.||.++|.+++|+|++. .|+++|.|.+||+|++-.....
T Consensus 450 V~AG~~d~F~IfvWS~qT---GqllDiLsGHEgPVs~l~f~~~~~-------------~LaS~SWDkTVRiW~if~s~~~ 513 (893)
T KOG0291|consen 450 VCAGAQDSFEIFVWSVQT---GQLLDILSGHEGPVSGLSFSPDGS-------------LLASGSWDKTVRIWDIFSSSGT 513 (893)
T ss_pred EEeeccceEEEEEEEeec---CeeeehhcCCCCcceeeEEccccC-------------eEEeccccceEEEEEeeccCce
Confidence 99999886 599999999 688999999999999999999999 8999999999999999876544
Q ss_pred ccCCC
Q 012007 459 LKGLH 463 (473)
Q Consensus 459 ~~~~~ 463 (473)
.+.+.
T Consensus 514 vEtl~ 518 (893)
T KOG0291|consen 514 VETLE 518 (893)
T ss_pred eeeEe
Confidence 44443
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=254.78 Aligned_cols=282 Identities=23% Similarity=0.381 Sum_probs=236.2
Q ss_pred ecccEEEEEecCCEEEEeeCCCcEEEeeCC-ccccccccCcccEEEEEEeCC---CCEEEEEeCCCeEEEEeCCCCCeee
Q 012007 122 KEGHIYSLAASGDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIISGD---SNKIFTGHQDGKIRIWKVSRKNASV 197 (473)
Q Consensus 122 h~~~V~~~~~~g~~l~tg~~dg~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~---~~~l~s~~~dg~i~vwd~~~~~~~~ 197 (473)
|.+.|.++.-.+++|++|++||.++|||.. +....+.+|.++|.+++|.-. ...|++++.|.++++|.++.+....
T Consensus 104 hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~ 183 (423)
T KOG0313|consen 104 HDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKV 183 (423)
T ss_pred chhhhhhhcccCceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhh
Confidence 677787887779999999999999999976 677889999999998888433 2469999999999999998765432
Q ss_pred EEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC------------
Q 012007 198 HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS------------ 265 (473)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~------------ 265 (473)
.... ...||...|.++...+++..+++|++|..|.||+..
T Consensus 184 ~~~~----------------------------~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~ 235 (423)
T KOG0313|consen 184 KALK----------------------------VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSN 235 (423)
T ss_pred hHHh----------------------------HhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccch
Confidence 2111 111699999999999999999999999999999932
Q ss_pred -------------CCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEE
Q 012007 266 -------------DCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAV 332 (473)
Q Consensus 266 -------------~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 332 (473)
++.++..+.+|..+|.++.|.+.+.+++++.|.+|+.||+.+++.. ........++++.+
T Consensus 236 ~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~-------~~~~~~ksl~~i~~ 308 (423)
T KOG0313|consen 236 RRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLK-------STLTTNKSLNCISY 308 (423)
T ss_pred hhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccce-------eeeecCcceeEeec
Confidence 1235667889999999999999889999999999999999865531 12223567899999
Q ss_pred ccCCCEEEEeCCCCcEEEEecCCc--ccccceeecCcceEEEEEec---CCEEEEEeCCCcEEEEecCCCCceeEEEEec
Q 012007 333 NQESAVVYCGSSDGLVNFWECEKH--LSHGGVLRGHKMAVLCLAAA---GNLVFSGSADRNICLWRREESGAHSCLAVLT 407 (473)
Q Consensus 333 ~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 407 (473)
+|..++|++|+.|..|++||.+++ ......+.+|...|.++.++ ..+|++|+.|+++++||+++. ..++..+.
T Consensus 309 ~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~--k~plydI~ 386 (423)
T KOG0313|consen 309 SPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST--KAPLYDIA 386 (423)
T ss_pred ccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC--CCcceeec
Confidence 999999999999999999999863 45556788999999888765 568999999999999999984 34899999
Q ss_pred CCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 408 GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 408 ~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
+|...|.++.|.... ++++||.|.+|+|+.-..
T Consensus 387 ~h~DKvl~vdW~~~~--------------~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 387 GHNDKVLSVDWNEGG--------------LIVSGGADNKLRIFKGSP 419 (423)
T ss_pred cCCceEEEEeccCCc--------------eEEeccCcceEEEecccc
Confidence 999999999999876 699999999999997543
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=260.16 Aligned_cols=281 Identities=31% Similarity=0.536 Sum_probs=236.4
Q ss_pred eeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q 012007 116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVS 191 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~ 191 (473)
+.++.+|.+.|.++.++ +++|++++.||.|++|+.. +....+..|...+..+.|++++++|++++.||.|++|++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 45677899999998875 6899999999999999865 3456677899999999999999999999999999999998
Q ss_pred CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeE
Q 012007 192 RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE 271 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~ 271 (473)
.++...... .|...|.++.|++++.++++++.|+.|.+||+.+++.+.
T Consensus 82 ~~~~~~~~~--------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 129 (289)
T cd00200 82 TGECVRTLT--------------------------------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT 129 (289)
T ss_pred cccceEEEe--------------------------------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE
Confidence 764332221 377889999999998899988889999999999999999
Q ss_pred EeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEE
Q 012007 272 SINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350 (473)
Q Consensus 272 ~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~i 350 (473)
.+..|...+.++.+++++ ++++++.|+.|++||++... ....+..|...+.++.|+|+++.+++++.|+.|++
T Consensus 130 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 203 (289)
T cd00200 130 TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK------CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL 203 (289)
T ss_pred EeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc------cceeEecCccccceEEECCCcCEEEEecCCCcEEE
Confidence 999999999999999977 66666669999999996322 23445578889999999999999999999999999
Q ss_pred EecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCccc
Q 012007 351 WECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEY 428 (473)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~ 428 (473)
||++..... ..+..|...+.++.+ ++.++++++.||.|++|++.. ...+..+..|...|.+++|++++.
T Consensus 204 ~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~----- 274 (289)
T cd00200 204 WDLSTGKCL-GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT---GECVQTLSGHTNSVTSLAWSPDGK----- 274 (289)
T ss_pred EECCCCcee-cchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC---ceeEEEccccCCcEEEEEECCCCC-----
Confidence 999864433 344467767766665 467888888899999999987 466777778999999999999987
Q ss_pred ccCCCccEEEEEeeCCCcEEEEE
Q 012007 429 HQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 429 ~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
+|++++.||.|++|+
T Consensus 275 --------~l~~~~~d~~i~iw~ 289 (289)
T cd00200 275 --------RLASGSADGTIRIWD 289 (289)
T ss_pred --------EEEEecCCCeEEecC
Confidence 899999999999996
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=240.68 Aligned_cols=256 Identities=19% Similarity=0.266 Sum_probs=221.2
Q ss_pred ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee
Q 012007 154 FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233 (473)
Q Consensus 154 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (473)
.+.+++|.+.|.++.|++|.++|++++.||.+.|||.-+.+.......
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl-------------------------------- 95 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL-------------------------------- 95 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec--------------------------------
Confidence 368999999999999999999999999999999999887765444332
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC------eeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC------KCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRREL 307 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~------~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~ 307 (473)
....|..++|+|.|+++++|+.|+...||++.+. +..+.+.+|.+.+.|+.|.+++.|++++.|.+..+||++.
T Consensus 96 ~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~ 175 (343)
T KOG0286|consen 96 PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIET 175 (343)
T ss_pred CceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEccc
Confidence 4568999999999999999999999999999855 4556789999999999999999999999999999999974
Q ss_pred cCCCcceeeeeeeccCCccEEEEEEcc-CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEe
Q 012007 308 QGKGTKHCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGS 384 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~ 384 (473)
+ .....+.+|.+.|.++.++| +++.+++|+.|+..++||++.+ ...+.+.+|...|.++. |+|.-+++|+
T Consensus 176 g------~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~ghesDINsv~ffP~G~afatGS 248 (343)
T KOG0286|consen 176 G------QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QCVQTFEGHESDINSVRFFPSGDAFATGS 248 (343)
T ss_pred c------eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc-ceeEeecccccccceEEEccCCCeeeecC
Confidence 3 34677889999999999999 9999999999999999999987 55678899998886654 6899999999
Q ss_pred CCCcEEEEecCCCCceeEEEEec--CCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCC
Q 012007 385 ADRNICLWRREESGAHSCLAVLT--GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGL 462 (473)
Q Consensus 385 ~dg~i~iwd~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~ 462 (473)
.|++.++||++.. +.+..+. .-..+|++++|+..++ +|++|..|..+.+||.-.++......
T Consensus 249 DD~tcRlyDlRaD---~~~a~ys~~~~~~gitSv~FS~SGR-------------lLfagy~d~~c~vWDtlk~e~vg~L~ 312 (343)
T KOG0286|consen 249 DDATCRLYDLRAD---QELAVYSHDSIICGITSVAFSKSGR-------------LLFAGYDDFTCNVWDTLKGERVGVLA 312 (343)
T ss_pred CCceeEEEeecCC---cEEeeeccCcccCCceeEEEccccc-------------EEEeeecCCceeEeeccccceEEEee
Confidence 9999999999983 4444443 3456899999999999 99999999999999998876654443
Q ss_pred CC
Q 012007 463 HS 464 (473)
Q Consensus 463 ~~ 464 (473)
.+
T Consensus 313 GH 314 (343)
T KOG0286|consen 313 GH 314 (343)
T ss_pred cc
Confidence 33
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=273.85 Aligned_cols=259 Identities=23% Similarity=0.357 Sum_probs=219.9
Q ss_pred cEEEE--EecCCEEEEeeCCCcEEEeeCCc---------------------------------cccccccCcccEEEEEE
Q 012007 125 HIYSL--AASGDLLYTGSDSKNIRVWKNLK---------------------------------EFSGFKSNSGLVKAIII 169 (473)
Q Consensus 125 ~V~~~--~~~g~~l~tg~~dg~i~vwd~~~---------------------------------~~~~~~~h~~~V~~l~~ 169 (473)
.+.|. +.++.+||.|-.|..|++|.+.. ....+.+|.++|..+.|
T Consensus 380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sF 459 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSF 459 (707)
T ss_pred cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeee
Confidence 34554 45678999999999999996431 01236789999999999
Q ss_pred eCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCE
Q 012007 170 SGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGL 249 (473)
Q Consensus 170 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 249 (473)
+|+.++|++|+.|++||+|.+.+........ +|..+|+++.|+|.|-+
T Consensus 460 sPd~rfLlScSED~svRLWsl~t~s~~V~y~--------------------------------GH~~PVwdV~F~P~GyY 507 (707)
T KOG0263|consen 460 SPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK--------------------------------GHLAPVWDVQFAPRGYY 507 (707)
T ss_pred cccccceeeccCCcceeeeecccceeEEEec--------------------------------CCCcceeeEEecCCceE
Confidence 9999999999999999999999887655444 59999999999999999
Q ss_pred EEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEE
Q 012007 250 LYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVT 328 (473)
Q Consensus 250 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~ 328 (473)
+|+|+.|++-++|.....++++.+.+|...|.|+.|+|+. ++++|+.|.++++||+..+. .+..+.+|..+|+
T Consensus 508 Fatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~------~VRiF~GH~~~V~ 581 (707)
T KOG0263|consen 508 FATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN------SVRIFTGHKGPVT 581 (707)
T ss_pred EEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc------EEEEecCCCCceE
Confidence 9999999999999999999999999999999999999997 99999999999999997443 4778899999999
Q ss_pred EEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCCc-------
Q 012007 329 ALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESGA------- 399 (473)
Q Consensus 329 ~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~------- 399 (473)
+++|+|+|++|++|+.||.|.+||+..+..+ ..+.+|.+.+.+++ .+|..||+|+.|.+|++||+.....
T Consensus 582 al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v-~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~ 660 (707)
T KOG0263|consen 582 ALAFSPCGRYLASGDEDGLIKIWDLANGSLV-KQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHI 660 (707)
T ss_pred EEEEcCCCceEeecccCCcEEEEEcCCCcch-hhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccccccccc
Confidence 9999999999999999999999999986554 56778998887665 4699999999999999999864211
Q ss_pred --------------eeEEEEecCCCCceeEEEEecCC
Q 012007 400 --------------HSCLAVLTGHTGPVKCLAVEEDR 422 (473)
Q Consensus 400 --------------~~~~~~~~~h~~~V~~l~~~~~~ 422 (473)
..++..+.....+|.+|.|....
T Consensus 661 ~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrN 697 (707)
T KOG0263|consen 661 STSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRN 697 (707)
T ss_pred ccccccccccCCCCcceeeeeeecCceEEEEEEeccc
Confidence 12445555556677778777654
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=290.56 Aligned_cols=282 Identities=15% Similarity=0.268 Sum_probs=223.7
Q ss_pred eeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCCcc----------ccccccCcccEEEEEEeCC-CCEEEEEeCCCe
Q 012007 118 SIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE----------FSGFKSNSGLVKAIIISGD-SNKIFTGHQDGK 184 (473)
Q Consensus 118 ~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~~----------~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~ 184 (473)
.+..|.+.|.+++|+ |++||+|+.|+.|+||+.... ...+ .+...|.+++|++. +.+|++++.||.
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCe
Confidence 456689999988875 889999999999999986421 1112 23467999999874 789999999999
Q ss_pred EEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEE
Q 012007 185 IRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWR 263 (473)
Q Consensus 185 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd 263 (473)
|++||+.+++...... +|.+.|++++|+| ++.+|++|+.|++|++||
T Consensus 557 v~lWd~~~~~~~~~~~--------------------------------~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd 604 (793)
T PLN00181 557 VQVWDVARSQLVTEMK--------------------------------EHEKRVWSIDYSSADPTLLASGSDDGSVKLWS 604 (793)
T ss_pred EEEEECCCCeEEEEec--------------------------------CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEE
Confidence 9999998765433221 4999999999997 789999999999999999
Q ss_pred cCCCeeeEEeecCCCceeEEEEcC-CC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEE
Q 012007 264 ISDCKCLESINAHDDAINSVVAGF-DS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC 341 (473)
Q Consensus 264 ~~~~~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~ 341 (473)
++++..+..+..+ ..+.++.|.+ ++ +|++|+.||.|++||++.. ......+.+|...|.++.|. ++.+|++
T Consensus 605 ~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~-----~~~~~~~~~h~~~V~~v~f~-~~~~lvs 677 (793)
T PLN00181 605 INQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNP-----KLPLCTMIGHSKTVSYVRFV-DSSTLVS 677 (793)
T ss_pred CCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-----CccceEecCCCCCEEEEEEe-CCCEEEE
Confidence 9999998888754 5788999854 44 8999999999999999732 22334567899999999997 6789999
Q ss_pred eCCCCcEEEEecCCcc-----cccceeecCcceE--EEEEecCCEEEEEeCCCcEEEEecCCCCceeE--------E--E
Q 012007 342 GSSDGLVNFWECEKHL-----SHGGVLRGHKMAV--LCLAAAGNLVFSGSADRNICLWRREESGAHSC--------L--A 404 (473)
Q Consensus 342 ~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------~--~ 404 (473)
++.|+.|++||++... .....+.+|...+ .++++++.+|++|+.|+.|++|+......... + .
T Consensus 678 ~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~ 757 (793)
T PLN00181 678 SSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGL 757 (793)
T ss_pred EECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccccc
Confidence 9999999999997431 2334667887765 44566799999999999999999765311100 0 0
Q ss_pred EecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 405 VLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 405 ~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
....|...|.+++|++++. +|++|+.||.|+||++
T Consensus 758 ~~~~~~~~V~~v~ws~~~~-------------~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 758 EVDDASQFISSVCWRGQSS-------------TLVAANSTGNIKILEM 792 (793)
T ss_pred ccCCCCcEEEEEEEcCCCC-------------eEEEecCCCcEEEEec
Confidence 1234566799999999998 8999999999999996
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=270.60 Aligned_cols=290 Identities=24% Similarity=0.347 Sum_probs=246.2
Q ss_pred cceeeeeeecccEEEEEecC---CEEEEeeCCCcEEEeeCCc-cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEe
Q 012007 114 GLIGSIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWKNLK-EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~g---~~l~tg~~dg~i~vwd~~~-~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd 189 (473)
.++..+.|..+.|..+.+=| ++||.++..+.+|+|+... ....+.+|+..|.++....+|-+|+||+.|.++++|.
T Consensus 314 ~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr 393 (775)
T KOG0319|consen 314 TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWR 393 (775)
T ss_pred EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEE
Confidence 45667888899999999765 7999999999999998663 3347889999999999767788999999999999999
Q ss_pred CCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC-CCEEEEEeCCCCEEEEEcCCCe
Q 012007 190 VSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCK 268 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~v~vwd~~~~~ 268 (473)
++.+..... .+ ..-.+|...|.+++++.. ..+|++++.|.++++|++...+
T Consensus 394 ~~~~~~~~~-~~---------------------------a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~ 445 (775)
T KOG0319|consen 394 LNNNCSKSL-CV---------------------------AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSK 445 (775)
T ss_pred ecCCcchhh-hh---------------------------hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcc
Confidence 844332111 10 112259999999999774 4689999999999999997622
Q ss_pred e-----e----EEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCE
Q 012007 269 C-----L----ESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAV 338 (473)
Q Consensus 269 ~-----~----~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 338 (473)
. + .....|+..|+|++++|+. +++||+.|.+.+||+++ ...+...+.+|...|.++.|+|..+.
T Consensus 446 ~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le------~~~l~~vLsGH~RGvw~V~Fs~~dq~ 519 (775)
T KOG0319|consen 446 ETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE------QLRLLGVLSGHTRGVWCVSFSKNDQL 519 (775)
T ss_pred cccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc------CceEEEEeeCCccceEEEEeccccce
Confidence 1 1 1234799999999999987 89999999999999996 44467889999999999999999999
Q ss_pred EEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEE
Q 012007 339 VYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCL 416 (473)
Q Consensus 339 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l 416 (473)
+++++.|++|+||.+.+. ...+.+.||...|...+| +|..|++++.||-|++|++.+ ..|+..+.+|.+.|.++
T Consensus 520 laT~SgD~TvKIW~is~f-SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt---~eC~~tlD~H~DrvWaL 595 (775)
T KOG0319|consen 520 LATCSGDKTVKIWSISTF-SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKT---NECEMTLDAHNDRVWAL 595 (775)
T ss_pred eEeccCCceEEEEEeccc-eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccc---hhhhhhhhhccceeEEE
Confidence 999999999999999985 555788999999987775 699999999999999999999 79999999999999999
Q ss_pred EEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 417 AVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
+.++... +++||+.||.|.+|.=-+
T Consensus 596 ~~~~~~~-------------~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 596 SVSPLLD-------------MFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred eecCccc-------------eeEecCCCeEEEEeecCc
Confidence 9999988 899999999999997443
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=247.28 Aligned_cols=249 Identities=24% Similarity=0.402 Sum_probs=221.6
Q ss_pred ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeE
Q 012007 152 KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231 (473)
Q Consensus 152 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (473)
+....+.+|.+.|.|+++.|.+.++++|+.|++|+|||+.+++......
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt------------------------------- 190 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT------------------------------- 190 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec-------------------------------
Confidence 4456788999999999999999999999999999999999997654433
Q ss_pred eeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCC
Q 012007 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGK 310 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~ 310 (473)
+|...|..+++++-..||++++.|+.|+.||++..+.++.+.+|-..|.|+..+|.- .|++|+.|..+++||+++.
T Consensus 191 -Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr-- 267 (460)
T KOG0285|consen 191 -GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR-- 267 (460)
T ss_pred -chhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeeccc--
Confidence 699999999999999999999999999999999999999999999999999999875 9999999999999999843
Q ss_pred CcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCc
Q 012007 311 GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRN 388 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~ 388 (473)
..+..+.+|..+|..+.+.|....+++|+.|++|++||++.++.. ..+..|...+.+++ |....+|+++.| .
T Consensus 268 ----~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~-~tlt~hkksvral~lhP~e~~fASas~d-n 341 (460)
T KOG0285|consen 268 ----ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM-ITLTHHKKSVRALCLHPKENLFASASPD-N 341 (460)
T ss_pred ----ceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCcee-EeeecccceeeEEecCCchhhhhccCCc-c
Confidence 346788999999999999998888999999999999999986554 46677888887665 557788888877 5
Q ss_pred EEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 389 ICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 389 i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
|+-|++.. ...+..+.+|+..|++++...|+ ++++|++.|.+.+||..++..
T Consensus 342 ik~w~~p~---g~f~~nlsgh~~iintl~~nsD~--------------v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 342 IKQWKLPE---GEFLQNLSGHNAIINTLSVNSDG--------------VLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred ceeccCCc---cchhhccccccceeeeeeeccCc--------------eEEEcCCceEEEEEecCcCcc
Confidence 99999988 56777799999999999999988 799999999999999998753
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=259.89 Aligned_cols=291 Identities=20% Similarity=0.334 Sum_probs=234.0
Q ss_pred ceeeeeeecccEEEEEec--CCEEEEeeCC-CcEEEeeCCcc--ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEe
Q 012007 115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDS-KNIRVWKNLKE--FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~~--g~~l~tg~~d-g~i~vwd~~~~--~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd 189 (473)
++..|.--+..|..++++ |++||.|+.. |.+.||+...+ +...++|...+++++++|||+++|||+.||+|+|||
T Consensus 299 lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn 378 (893)
T KOG0291|consen 299 LIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN 378 (893)
T ss_pred EEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEe
Confidence 344444445667778887 9999999874 79999997644 556678999999999999999999999999999999
Q ss_pred CCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee
Q 012007 190 VSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
..++-+...+. .|+..|+.+.|+..++.+++.+-||+|+.||+...+.
T Consensus 379 ~~SgfC~vTFt--------------------------------eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 379 TQSGFCFVTFT--------------------------------EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred ccCceEEEEec--------------------------------cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce
Confidence 98876655443 4999999999999999999999999999999999999
Q ss_pred eEEeecCC-CceeEEEEcCCC-EEEEEeCCC-cEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC
Q 012007 270 LESINAHD-DAINSVVAGFDS-LVFTGSADG-TVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG 346 (473)
Q Consensus 270 ~~~~~~~~-~~v~~l~~~~~~-~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg 346 (473)
.+++.... -...|++..|.| ++.+|+.|. .|.+|++.++ .+...+.+|+++|.+++|+|++..|++++.|.
T Consensus 427 fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG------qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk 500 (893)
T KOG0291|consen 427 FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG------QLLDILSGHEGPVSGLSFSPDGSLLASGSWDK 500 (893)
T ss_pred eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC------eeeehhcCCCCcceeeEEccccCeEEeccccc
Confidence 99887543 456788888888 555666665 6999999643 36788999999999999999999999999999
Q ss_pred cEEEEecCCccccc-ceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCcee-----------------EEEEecC
Q 012007 347 LVNFWECEKHLSHG-GVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHS-----------------CLAVLTG 408 (473)
Q Consensus 347 ~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----------------~~~~~~~ 408 (473)
+|++||+-...... .....|.....++.|+|+.|++++-||.|.+||........ ....-..
T Consensus 501 TVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa 580 (893)
T KOG0291|consen 501 TVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSA 580 (893)
T ss_pred eEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcc
Confidence 99999986432222 23334555556777899999999999999999987631110 0011112
Q ss_pred CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 409 HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 409 h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
.....+.|++++|+. ++++||..+.|+||++.++-
T Consensus 581 ~~K~Ftti~ySaDG~-------------~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 581 KGKTFTTICYSADGK-------------CILAGGESNSICIYDVPEGV 615 (893)
T ss_pred cCCceEEEEEcCCCC-------------EEEecCCcccEEEEECchhh
Confidence 245789999999999 89999999999999998764
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=246.46 Aligned_cols=297 Identities=22% Similarity=0.299 Sum_probs=241.9
Q ss_pred cceeeeeeecccEEEEEecC---CEEEEeeCCCcEEEeeC--CccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEE
Q 012007 114 GLIGSIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWKN--LKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIW 188 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~g---~~l~tg~~dg~i~vwd~--~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw 188 (473)
.-++.+.||...|.++++-. =.++||++|++|-+|+- .+-...+..|..-|.|+.|+|||.++++++.||+|.+|
T Consensus 138 ~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iy 217 (603)
T KOG0318|consen 138 NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIY 217 (603)
T ss_pred CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEE
Confidence 45788899999999998763 37999999999999983 35566788899999999999999999999999999999
Q ss_pred eCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe
Q 012007 189 KVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK 268 (473)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~ 268 (473)
|=.+++......-. .+|.+.|.+|+|+||+..+++++.|.+++|||+.+.+
T Consensus 218 DGktge~vg~l~~~-----------------------------~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~s 268 (603)
T KOG0318|consen 218 DGKTGEKVGELEDS-----------------------------DAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNS 268 (603)
T ss_pred cCCCccEEEEecCC-----------------------------CCccccEEEEEECCCCceEEEecCCceEEEEEeeccc
Confidence 99888765444321 1399999999999999999999999999999999999
Q ss_pred eeEEeecCC---CceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC
Q 012007 269 CLESINAHD---DAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD 345 (473)
Q Consensus 269 ~~~~~~~~~---~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d 345 (473)
++.++.... +....+.|. .+.|++.+.+|.|.+++.... .....+.+|...|+++..++++.+|++|+.|
T Consensus 269 lv~t~~~~~~v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d~------~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD 341 (603)
T KOG0318|consen 269 LVSTWPMGSTVEDQQVGCLWQ-KDHLITVSLSGTINYLNPSDP------SVLKVISGHNKSITALTVSPDGKTIYSGSYD 341 (603)
T ss_pred eEEEeecCCchhceEEEEEEe-CCeEEEEEcCcEEEEecccCC------ChhheecccccceeEEEEcCCCCEEEeeccC
Confidence 999886432 333444554 678999999999999998632 2577889999999999999999999999999
Q ss_pred CcEEEEecCCcccccce---------------------------------------------------------------
Q 012007 346 GLVNFWECEKHLSHGGV--------------------------------------------------------------- 362 (473)
Q Consensus 346 g~i~iwd~~~~~~~~~~--------------------------------------------------------------- 362 (473)
|.|.-||..++......
T Consensus 342 G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~av 421 (603)
T KOG0318|consen 342 GHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAV 421 (603)
T ss_pred ceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEE
Confidence 99999997543211000
Q ss_pred ---------ee----------cCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 363 ---------LR----------GHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 363 ---------~~----------~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
+. +......+++++++.+++|+.|+.|+||.+..... .....+..|.++|++++++||+.
T Consensus 422 v~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l-~ee~~~~~h~a~iT~vaySpd~~ 500 (603)
T KOG0318|consen 422 VACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL-KEEAKLLEHRAAITDVAYSPDGA 500 (603)
T ss_pred EEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc-cceeeeecccCCceEEEECCCCc
Confidence 00 00112234556789999999999999999987432 44556678999999999999999
Q ss_pred CCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 424 HDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 424 ~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
+||+|...+.|.+|++.+.+....
T Consensus 501 -------------yla~~Da~rkvv~yd~~s~~~~~~ 524 (603)
T KOG0318|consen 501 -------------YLAAGDASRKVVLYDVASREVKTN 524 (603)
T ss_pred -------------EEEEeccCCcEEEEEcccCceecc
Confidence 999999999999999998876443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=262.01 Aligned_cols=248 Identities=25% Similarity=0.387 Sum_probs=226.7
Q ss_pred cccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeec
Q 012007 155 SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRH 234 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
+.+..++..|.++.|+|...+++++-.+|.|.||+.++......+.+ .
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV--------------------------------~ 54 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV--------------------------------S 54 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee--------------------------------c
Confidence 34556899999999999999999999999999999999887777665 4
Q ss_pred cCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcc
Q 012007 235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTK 313 (473)
Q Consensus 235 ~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~ 313 (473)
.-+|.+..|-...+++++|+.|..|+||+..+++.+..+.+|.+.|.+++.+|.. ++++++.|-.|++||.+ ..
T Consensus 55 ~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we-----~~ 129 (794)
T KOG0276|consen 55 EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE-----NE 129 (794)
T ss_pred ccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeecc-----Cc
Confidence 4578888899999999999999999999999999999999999999999999987 99999999999999998 67
Q ss_pred eeeeeeeccCCccEEEEEEcc-CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe----cCCEEEEEeCCCc
Q 012007 314 HCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA----AGNLVFSGSADRN 388 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~s~~~dg~ 388 (473)
....+.+.+|..-|.+++|+| |.+.+++++.|++|++|.+... .+...+.+|...|.|+.+ |..+|++|+.|.+
T Consensus 130 wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~-~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t 208 (794)
T KOG0276|consen 130 WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP-HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT 208 (794)
T ss_pred eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC-CCceeeeccccCcceEEeccCCCcceEEecCCCce
Confidence 788899999999999999999 6689999999999999999874 445688899999999986 3459999999999
Q ss_pred EEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 389 ICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 389 i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
|+|||.++ ..|++++.||...|..+.|+|.-+ +++|||.||+||||.-.+-.
T Consensus 209 iKvWDyQt---k~CV~TLeGHt~Nvs~v~fhp~lp-------------iiisgsEDGTvriWhs~Ty~ 260 (794)
T KOG0276|consen 209 IKVWDYQT---KSCVQTLEGHTNNVSFVFFHPELP-------------IIISGSEDGTVRIWNSKTYK 260 (794)
T ss_pred EEEeecch---HHHHHHhhcccccceEEEecCCCc-------------EEEEecCCccEEEecCccee
Confidence 99999999 799999999999999999999988 99999999999999977643
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=266.45 Aligned_cols=286 Identities=20% Similarity=0.351 Sum_probs=242.8
Q ss_pred cccEEEEEec--CCEEEEeeCCCcEEEeeC--CccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeE
Q 012007 123 EGHIYSLAAS--GDLLYTGSDSKNIRVWKN--LKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVH 198 (473)
Q Consensus 123 ~~~V~~~~~~--g~~l~tg~~dg~i~vwd~--~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 198 (473)
...|..++|. ..+++++-..|.|++||- ...+..|..|.++|..|+|+|++.++++||.|-.|+||+..+.++...
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft 88 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT 88 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh
Confidence 4455555554 669999999999999994 477889999999999999999999999999999999999988776544
Q ss_pred EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCC
Q 012007 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDD 278 (473)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 278 (473)
.. +|-+.|..+.|++.-.+++++|.|.+|+||+..+++++..+.+|..
T Consensus 89 L~--------------------------------GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH 136 (1202)
T KOG0292|consen 89 LL--------------------------------GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH 136 (1202)
T ss_pred hc--------------------------------cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCce
Confidence 33 6999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEcCC-CEEEEEeCCCcEEEEeCcccCCC-----------------------cceeeeeeeccCCccEEEEEEcc
Q 012007 279 AINSVVAGFD-SLVFTGSADGTVKVWRRELQGKG-----------------------TKHCLAQVLLKHENAVTALAVNQ 334 (473)
Q Consensus 279 ~v~~l~~~~~-~~l~s~~~dg~i~vwd~~~~~~~-----------------------~~~~~~~~~~~~~~~v~~l~~~~ 334 (473)
.|.|..|+|. .++++++-|.+|+|||+..-.+. ........+.+|...|+.++|+|
T Consensus 137 YVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp 216 (1202)
T KOG0292|consen 137 YVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP 216 (1202)
T ss_pred EEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC
Confidence 9999999995 59999999999999997521110 01223456789999999999999
Q ss_pred CCCEEEEeCCCCcEEEEecCCc-ccccceeecCcceEEEEEecC--CEEEEEeCCCcEEEEecCCCCceeEEEEecCCCC
Q 012007 335 ESAVVYCGSSDGLVNFWECEKH-LSHGGVLRGHKMAVLCLAAAG--NLVFSGSADRNICLWRREESGAHSCLAVLTGHTG 411 (473)
Q Consensus 335 ~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~ 411 (473)
.-.++++|+.|..|++|.+... .-.....++|.+.|.++-+++ +++++.++|++|+|||+.. ...+++++...+
T Consensus 217 TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k---Rt~v~tfrrend 293 (1202)
T KOG0292|consen 217 TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK---RTSVQTFRREND 293 (1202)
T ss_pred CcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccc---ccceeeeeccCC
Confidence 9999999999999999998643 233457789999999887775 8999999999999999998 677888877778
Q ss_pred ceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 412 PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 412 ~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
..+.++.+|..+ |+.++.|+-+.|+.+....|
T Consensus 294 RFW~laahP~lN--------------LfAAgHDsGm~VFkleRErp 325 (1202)
T KOG0292|consen 294 RFWILAAHPELN--------------LFAAGHDSGMIVFKLERERP 325 (1202)
T ss_pred eEEEEEecCCcc--------------eeeeecCCceEEEEEcccCc
Confidence 899999999987 55555677788888875443
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-33 Score=266.66 Aligned_cols=280 Identities=29% Similarity=0.486 Sum_probs=246.9
Q ss_pred ecccEEEEEecCCEEEEeeCCCcEEEeeCC--ccccc-cccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeE
Q 012007 122 KEGHIYSLAASGDLLYTGSDSKNIRVWKNL--KEFSG-FKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVH 198 (473)
Q Consensus 122 h~~~V~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~-~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 198 (473)
|...+.+..+.+.++++++.|++|++||.. ..+.. +.+|.+.|.++++...+.+|++|+.|.++++||..++++...
T Consensus 207 ~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~ 286 (537)
T KOG0274|consen 207 DDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS 286 (537)
T ss_pred CcchhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEE
Confidence 455678888899999999999999999965 33444 899999999999987778999999999999999999987665
Q ss_pred EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCC
Q 012007 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDD 278 (473)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 278 (473)
.. +|.+.|.++...+ .++++|+.|.+|++|++.++.++..+.+|.+
T Consensus 287 l~--------------------------------gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~ 332 (537)
T KOG0274|consen 287 LQ--------------------------------GHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTG 332 (537)
T ss_pred ec--------------------------------CCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccc
Confidence 54 5999999998754 6788899999999999999999999999999
Q ss_pred ceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccc
Q 012007 279 AINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLS 358 (473)
Q Consensus 279 ~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 358 (473)
+|.++... ++++++|+.|+.|++||+. ....+..+.+|...|.++.+... ..+++|+.|+.|++||+++...
T Consensus 333 ~V~~v~~~-~~~lvsgs~d~~v~VW~~~------~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~ 404 (537)
T KOG0274|consen 333 PVNCVQLD-EPLLVSGSYDGTVKVWDPR------TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRK 404 (537)
T ss_pred cEEEEEec-CCEEEEEecCceEEEEEhh------hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhh
Confidence 99999997 6799999999999999996 34467888999999999988765 8899999999999999998746
Q ss_pred ccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecC-CCCceeEEEEecCCCCCcccccCCCccEE
Q 012007 359 HGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTG-HTGPVKCLAVEEDRDHDHEYHQKGDQRWT 437 (473)
Q Consensus 359 ~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~~~~~~~~~~~~~ 437 (473)
....+.+|...+..+...+++|++++.|++|++||... ..++..+.+ |.+.|+.+++. .. .
T Consensus 405 c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~---~~~~~~~~~~~~~~v~~l~~~--~~-------------~ 466 (537)
T KOG0274|consen 405 CIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEE---GECLRTLEGRHVGGVSALALG--KE-------------E 466 (537)
T ss_pred hhhhhcCCcccccccccccceeEeccccccEEEeeccc---CceeeeeccCCcccEEEeecC--cc-------------e
Confidence 66789999999999999999999999999999999998 678888888 77899999988 22 6
Q ss_pred EEEeeCCCcEEEEEcCCCCCCccC
Q 012007 438 VYSGSLDKSVKVWRVSEHAPDLKG 461 (473)
Q Consensus 438 l~s~s~Dg~v~iW~i~~~~~~~~~ 461 (473)
+++++.||++++||+..+......
T Consensus 467 il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 467 ILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred EEEEecCCeeEEEecccCchhhhh
Confidence 999999999999999998765544
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=228.17 Aligned_cols=288 Identities=17% Similarity=0.258 Sum_probs=236.3
Q ss_pred eeeeecccEEEEEec--CCEEEEeeCCCcEEEee--CCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Q 012007 118 SIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRK 193 (473)
Q Consensus 118 ~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd--~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~ 193 (473)
-|.||+.+++.+.++ |++|++++.|.++.||- ..+.+-++.+|++.|.|+..+-+.++|++|+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 367899999999876 99999999999999995 45778899999999999999999999999999999999999999
Q ss_pred CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC-----CCCEEEEEcC---
Q 012007 194 NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW-----DKTLKVWRIS--- 265 (473)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-----dg~v~vwd~~--- 265 (473)
++..... ...+|..+.|+.+|++++.... .+.|.++|++
T Consensus 85 k~la~~k---------------------------------~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 85 KQLATWK---------------------------------TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDS 131 (327)
T ss_pred cEEEEee---------------------------------cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence 8876665 5678999999999998887753 3569999998
Q ss_pred ----CCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEE
Q 012007 266 ----DCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVY 340 (473)
Q Consensus 266 ----~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 340 (473)
..++...+..+...++.+.|.+-+ .|++|..||.|..||.+ .....+.....|...|+.|.++++..+++
T Consensus 132 ~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~-----~g~~~v~s~~~h~~~Ind~q~s~d~T~Fi 206 (327)
T KOG0643|consen 132 SDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDAR-----TGKELVDSDEEHSSKINDLQFSRDRTYFI 206 (327)
T ss_pred hhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcc-----cCceeeechhhhccccccccccCCcceEE
Confidence 445678888899999999999887 99999999999999998 34456677788999999999999999999
Q ss_pred EeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecC--CCC---------ceeEEEEecCC
Q 012007 341 CGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRRE--ESG---------AHSCLAVLTGH 409 (473)
Q Consensus 341 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~--~~~---------~~~~~~~~~~h 409 (473)
+++.|.+-++||..+................+++|...+++.|+.....-|=... .++ ..+.+..+.+|
T Consensus 207 T~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH 286 (327)
T KOG0643|consen 207 TGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH 286 (327)
T ss_pred ecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc
Confidence 9999999999999986655544444445556667776666666543222222111 110 13456778899
Q ss_pred CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 410 TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 410 ~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
-++|++++|+|++. ..++|+.||.|++.-+....
T Consensus 287 FGPINsvAfhPdGk-------------sYsSGGEDG~VR~h~Fd~~Y 320 (327)
T KOG0643|consen 287 FGPINSVAFHPDGK-------------SYSSGGEDGYVRLHHFDSNY 320 (327)
T ss_pred ccCcceeEECCCCc-------------ccccCCCCceEEEEEeccch
Confidence 99999999999999 79999999999998776543
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=249.75 Aligned_cols=238 Identities=29% Similarity=0.505 Sum_probs=209.8
Q ss_pred CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 160 NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
....|.|+.+. ...+++|..|.+|+|||..+..+.... .||++.|.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L--------------------------------~GHtGSVL 241 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKIL--------------------------------TGHTGSVL 241 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhh--------------------------------hcCCCcEE
Confidence 45679999995 448999999999999999876543322 36999999
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeee
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQV 319 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 319 (473)
|+.|.. +.+++|+.|.+|++||+++++++.++-.|...|..+.|+ ++++++++.|.+|.+||+... ....+...
T Consensus 242 CLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sp---s~it~rrV 315 (499)
T KOG0281|consen 242 CLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS-NGYMVTCSKDRSIAVWDMASP---TDITLRRV 315 (499)
T ss_pred eeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe-CCEEEEecCCceeEEEeccCc---hHHHHHHH
Confidence 999854 699999999999999999999999999999999999995 679999999999999999743 24445667
Q ss_pred eccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCc
Q 012007 320 LLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGA 399 (473)
Q Consensus 320 ~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 399 (473)
+.+|..+|+.+.|+ .+++++++.|.+|++|++.+. .....+.+|.-.|.|+.+.++++++|+.|.+|++||+..
T Consensus 316 LvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~-efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~--- 389 (499)
T KOG0281|consen 316 LVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTC-EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC--- 389 (499)
T ss_pred Hhhhhhheeeeccc--cceEEEecCCceEEEEeccce-eeehhhhcccccceehhccCeEEEecCCCceEEEEeccc---
Confidence 88999999999996 559999999999999999985 455788999999999999999999999999999999999
Q ss_pred eeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 400 HSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 400 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
+.++..+.||..-|.++.|... .+++|+.||+|+|||+......
T Consensus 390 G~cLRvLeGHEeLvRciRFd~k---------------rIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 390 GACLRVLEGHEELVRCIRFDNK---------------RIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred cHHHHHHhchHHhhhheeecCc---------------eeeeccccceEEEEecccccCC
Confidence 6899999999999999999875 5999999999999999876544
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=252.71 Aligned_cols=243 Identities=24% Similarity=0.375 Sum_probs=209.1
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE
Q 012007 161 SGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 240 (473)
...|..|.|.|+|+.|++|+..|.+.+|+....... .+...|.++|.+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE--------------------------------tilQaHDs~Vr~ 143 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE--------------------------------TILQAHDSPVRT 143 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHH--------------------------------HHhhhhccccee
Confidence 467999999999999999999999999997443221 122249999999
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecC-CCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeee
Q 012007 241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH-DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQ 318 (473)
Q Consensus 241 l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 318 (473)
+.|++++.++++|+.+|.|++|+... ..+..+.+| ...|.+++|+|.. .+++++.||+|+|||..... ...
T Consensus 144 m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k------ee~ 216 (464)
T KOG0284|consen 144 MKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK------EER 216 (464)
T ss_pred EEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc------hhh
Confidence 99999999999999999999999754 444555554 4899999999876 99999999999999986332 345
Q ss_pred eeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCC
Q 012007 319 VLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 319 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~ 396 (473)
.+.+|.-.|.++.|+|...+|++++.|..|++||.+++..+ ..+.+|+..|+.+.+ ++++|++++.|..+++||+++
T Consensus 217 vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl-~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~ 295 (464)
T KOG0284|consen 217 VLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCL-ATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT 295 (464)
T ss_pred eeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchh-hhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH
Confidence 66899999999999999999999999999999999997655 577789999988776 589999999999999999997
Q ss_pred CCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 397 SGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 397 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
.+.+.++++|...|++++|+|-... +|.+|+.||.|..|.+...++.
T Consensus 296 ---mkEl~~~r~Hkkdv~~~~WhP~~~~------------lftsgg~Dgsvvh~~v~~~~p~ 342 (464)
T KOG0284|consen 296 ---MKELFTYRGHKKDVTSLTWHPLNES------------LFTSGGSDGSVVHWVVGLEEPL 342 (464)
T ss_pred ---hHHHHHhhcchhhheeecccccccc------------ceeeccCCCceEEEeccccccc
Confidence 6778899999999999999998775 8999999999999999844443
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=232.73 Aligned_cols=258 Identities=22% Similarity=0.330 Sum_probs=215.3
Q ss_pred CccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceee
Q 012007 151 LKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVL 230 (473)
Q Consensus 151 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (473)
...+..+.+|++.|..+.|+|+|.+||+|+.|..|.+|++....... ..
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~-------------------------------~~ 85 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF-------------------------------WV 85 (338)
T ss_pred cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccce-------------------------------ee
Confidence 34566788999999999999999999999999999999976543211 11
Q ss_pred EeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCccc
Q 012007 231 KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQ 308 (473)
Q Consensus 231 ~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~ 308 (473)
..+|.++|..+.|.++++.+++++.|.+|+.||+++|++++.++.|...|+.+....-+ ++.+++.||++++||++..
T Consensus 86 lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k 165 (338)
T KOG0265|consen 86 LKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK 165 (338)
T ss_pred eccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc
Confidence 12599999999999999999999999999999999999999999999999999855555 7889999999999999843
Q ss_pred CCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCC
Q 012007 309 GKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSAD 386 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~d 386 (473)
+. .........++++.|..++..+++|+-|+.|++||+++. .....+.||...|+.++ ++|.++.+-+.|
T Consensus 166 ~~-------~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~-d~~~~lsGh~DtIt~lsls~~gs~llsnsMd 237 (338)
T KOG0265|consen 166 EA-------IKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN-DGLYTLSGHADTITGLSLSRYGSFLLSNSMD 237 (338)
T ss_pred ch-------hhccccceeEEEEEecccccceeeccccCceeeeccccC-cceEEeecccCceeeEEeccCCCcccccccc
Confidence 21 122334678999999999999999999999999999875 34468899999997765 679999999999
Q ss_pred CcEEEEecCCCCc-eeEEEEecCCCC----ceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 387 RNICLWRREESGA-HSCLAVLTGHTG----PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 387 g~i~iwd~~~~~~-~~~~~~~~~h~~----~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
.++++||++.-.. ..++..+.+|.. ....++|+|++. .+.+|+.|+.|++||........+
T Consensus 238 ~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~-------------~i~ags~dr~vyvwd~~~r~~lyk 303 (338)
T KOG0265|consen 238 NTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGT-------------KITAGSADRFVYVWDTTSRRILYK 303 (338)
T ss_pred ceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCC-------------ccccccccceEEEeecccccEEEE
Confidence 9999999986332 456888887743 356789999998 799999999999999987554443
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=241.20 Aligned_cols=270 Identities=23% Similarity=0.368 Sum_probs=232.0
Q ss_pred CEEEEeeCCCcEEEee---CC-ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccce
Q 012007 134 DLLYTGSDSKNIRVWK---NL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKD 209 (473)
Q Consensus 134 ~~l~tg~~dg~i~vwd---~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 209 (473)
+-++.|.-.+..+..+ .. .....+.+|..+|+.+-|+|+-..+++++.|++|++||..+++.....+
T Consensus 77 ~el~~g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~Lr--------- 147 (406)
T KOG0295|consen 77 DELIAGDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLR--------- 147 (406)
T ss_pred cccccCCCCcCccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhh---------
Confidence 4455554445444433 22 4456677899999999999999999999999999999999998643332
Q ss_pred eEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC-CeeeEEeecCCCceeEEEEcCC
Q 012007 210 YVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD-CKCLESINAHDDAINSVVAGFD 288 (473)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~~~v~~l~~~~~ 288 (473)
+|.+.|..|.|+..|++|++++.|-.+++||..+ .++++.+.+|+..|.++++-|.
T Consensus 148 -----------------------GHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~ 204 (406)
T KOG0295|consen 148 -----------------------GHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPL 204 (406)
T ss_pred -----------------------ccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEec
Confidence 5999999999999999999999999999999987 6788888999999999999988
Q ss_pred C-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCc
Q 012007 289 S-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHK 367 (473)
Q Consensus 289 ~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 367 (473)
+ ++++++.|.+|+.|++.++ ..+..+.+|...|..++.+.||.++++++.|.+|++|-+.+. .....++.|.
T Consensus 205 gd~ilS~srD~tik~We~~tg------~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~-~~k~~lR~hE 277 (406)
T KOG0295|consen 205 GDHILSCSRDNTIKAWECDTG------YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK-QCKAELREHE 277 (406)
T ss_pred CCeeeecccccceeEEecccc------eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccc-hhhhhhhccc
Confidence 7 9999999999999999733 346788999999999999999999999999999999999874 3445777788
Q ss_pred ceEEEEEec-----------------CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCccccc
Q 012007 368 MAVLCLAAA-----------------GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQ 430 (473)
Q Consensus 368 ~~v~~~~~~-----------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~ 430 (473)
.++-|+++. +.++++++.|++|++||+.+ ..++.++.+|...|..++|+|.|+
T Consensus 278 h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t---g~cL~tL~ghdnwVr~~af~p~Gk------- 347 (406)
T KOG0295|consen 278 HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST---GMCLFTLVGHDNWVRGVAFSPGGK------- 347 (406)
T ss_pred cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC---CeEEEEEecccceeeeeEEcCCCe-------
Confidence 777766541 35999999999999999999 699999999999999999999999
Q ss_pred CCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 431 KGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 431 ~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
+|+++.+|+++++||++.....
T Consensus 348 ------yi~ScaDDktlrvwdl~~~~cm 369 (406)
T KOG0295|consen 348 ------YILSCADDKTLRVWDLKNLQCM 369 (406)
T ss_pred ------EEEEEecCCcEEEEEeccceee
Confidence 9999999999999999987643
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=225.61 Aligned_cols=254 Identities=24% Similarity=0.330 Sum_probs=219.6
Q ss_pred ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeE
Q 012007 152 KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231 (473)
Q Consensus 152 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (473)
+.+..+..+.++|.++.|+-||+|.++|+.|.+|++|+...+.++....
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs------------------------------- 56 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS------------------------------- 56 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeec-------------------------------
Confidence 3456778899999999999999999999999999999998887655443
Q ss_pred eeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCC
Q 012007 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGK 310 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~ 310 (473)
+|...|..++.+.|+..|++|+.|..|.+||+++|+.++.+.+|.+.|+.+.|+.+. .+++|+.|..+++||.+.
T Consensus 57 -ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS--- 132 (307)
T KOG0316|consen 57 -GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRS--- 132 (307)
T ss_pred -CCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEccc---
Confidence 599999999999999999999999999999999999999999999999999999887 899999999999999985
Q ss_pred CcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEE
Q 012007 311 GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNIC 390 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~ 390 (473)
....+++.+......|.++... +..+++|+.||+++.||++.+... ....+|.....+++.+++.+++++.|++++
T Consensus 133 -~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~-sDy~g~pit~vs~s~d~nc~La~~l~stlr 208 (307)
T KOG0316|consen 133 -RSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLS-SDYFGHPITSVSFSKDGNCSLASSLDSTLR 208 (307)
T ss_pred -CCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceee-hhhcCCcceeEEecCCCCEEEEeeccceee
Confidence 3445677788888899999886 567999999999999999987554 345578888888899999999999999999
Q ss_pred EEecCCCCceeEEEEecCCCCcee--EEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 391 LWRREESGAHSCLAVLTGHTGPVK--CLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 391 iwd~~~~~~~~~~~~~~~h~~~V~--~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
+.|-.+ ++++..+.||...=. ..++..... .+++|++||.|.+||+-+.....+
T Consensus 209 LlDk~t---GklL~sYkGhkn~eykldc~l~qsdt-------------hV~sgSEDG~Vy~wdLvd~~~~sk 264 (307)
T KOG0316|consen 209 LLDKET---GKLLKSYKGHKNMEYKLDCCLNQSDT-------------HVFSGSEDGKVYFWDLVDETQISK 264 (307)
T ss_pred ecccch---hHHHHHhcccccceeeeeeeecccce-------------eEEeccCCceEEEEEeccceeeee
Confidence 999988 688999999976433 445555544 799999999999999988765444
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=231.31 Aligned_cols=284 Identities=18% Similarity=0.323 Sum_probs=237.1
Q ss_pred eeeeecccEEEEEec-----CCEEEEeeCCCcEEEe--eCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 118 SIVRKEGHIYSLAAS-----GDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 118 ~l~~h~~~V~~~~~~-----g~~l~tg~~dg~i~vw--d~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
+-.+|..+|..+.++ |-+|++++.||.-.+- |+..-+.+|.+|.++|....++.+..+-++++.|=+-+|||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 345788899888764 7799999999977665 466778999999999999999999889999999999999999
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe-e
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK-C 269 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~-~ 269 (473)
-++.....+. |..-|..++|+.|.++|++|+.+..++|||++..+ +
T Consensus 89 ~tgdelhsf~---------------------------------hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap 135 (334)
T KOG0278|consen 89 VTGDELHSFE---------------------------------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP 135 (334)
T ss_pred hhhhhhhhhh---------------------------------hhheeeeEEecccchhhhccchHHHhhhhhccCCCCC
Confidence 8887655443 88899999999999999999999999999997654 5
Q ss_pred eEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcE
Q 012007 270 LESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLV 348 (473)
Q Consensus 270 ~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i 348 (473)
..++.+|.+.|..+.|.... .|++.+.|++||+||.+++.. ++ ....+..|+++.++++|++|.++ ..+.|
T Consensus 136 p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~------v~-sL~~~s~VtSlEvs~dG~ilTia-~gssV 207 (334)
T KOG0278|consen 136 PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE------VQ-SLEFNSPVTSLEVSQDGRILTIA-YGSSV 207 (334)
T ss_pred chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE------EE-EEecCCCCcceeeccCCCEEEEe-cCcee
Confidence 67788999999999886554 888889999999999986542 12 22346789999999999988655 45789
Q ss_pred EEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEe-cCCCCceeEEEEecCCCCCcc
Q 012007 349 NFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVL-TGHTGPVKCLAVEEDRDHDHE 427 (473)
Q Consensus 349 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~~~~ 427 (473)
.+||..+...+............++.|+...+++|+.|..++.||..++ ..+..+ .+|.++|.|+.|+|++.
T Consensus 208 ~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg---eEi~~~nkgh~gpVhcVrFSPdGE---- 280 (334)
T KOG0278|consen 208 KFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG---EEIGSYNKGHFGPVHCVRFSPDGE---- 280 (334)
T ss_pred EEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCC---ceeeecccCCCCceEEEEECCCCc----
Confidence 9999987655544444455556778899999999999999999999995 444454 89999999999999999
Q ss_pred cccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 428 YHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 428 ~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
+.++||.||+|++|.+..++..
T Consensus 281 ---------~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 281 ---------LYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ---------eeeccCCCceEEEEEecCCCch
Confidence 8999999999999999877654
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=251.24 Aligned_cols=337 Identities=21% Similarity=0.336 Sum_probs=245.1
Q ss_pred cceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEe
Q 012007 114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd 189 (473)
...-++.+|...|+++.++ |..|++|+.|+.|.|||+. .....+.+|...|+..-|..+.++|++.+.|+.|++||
T Consensus 98 ~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~Wd 177 (888)
T KOG0306|consen 98 EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWD 177 (888)
T ss_pred ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEe
Confidence 4566788899999988887 8899999999999999965 45667888888888888888777888888888888888
Q ss_pred CCCCCeeeEEee----------cc----------------c--c--------------------------------ccce
Q 012007 190 VSRKNASVHKRV----------GS----------------L--P--------------------------------TFKD 209 (473)
Q Consensus 190 ~~~~~~~~~~~~----------~~----------------~--~--------------------------------~~~~ 209 (473)
+++..+...... .. + + ....
T Consensus 178 L~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r 257 (888)
T KOG0306|consen 178 LETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDR 257 (888)
T ss_pred cccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCccc
Confidence 866443211000 00 0 0 0000
Q ss_pred eEeec---------------------------------------------------------------------------
Q 012007 210 YVKSS--------------------------------------------------------------------------- 214 (473)
Q Consensus 210 ~~~~~--------------------------------------------------------------------------- 214 (473)
++.+.
T Consensus 258 ~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~ 337 (888)
T KOG0306|consen 258 FLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENT 337 (888)
T ss_pred EEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCccee
Confidence 00000
Q ss_pred -----CCCcceEEEee----------cceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEE-------
Q 012007 215 -----VNPKNYVEVRR----------NRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES------- 272 (473)
Q Consensus 215 -----~~~~~~~~~~~----------~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~------- 272 (473)
.+...+..+.. .......+|...|..++++.+...+++|+ .+.|++|+..+.+++++
T Consensus 338 lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l 416 (888)
T KOG0306|consen 338 LVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYIL 416 (888)
T ss_pred EEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEE
Confidence 00000000000 01133446888888888888877777665 46788888776654433
Q ss_pred ---------------------------------eecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCC--Ccceee
Q 012007 273 ---------------------------------INAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGK--GTKHCL 316 (473)
Q Consensus 273 ---------------------------------~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~--~~~~~~ 316 (473)
+++|.+.|+.++..|++ .+++|+.|.+|++||...... +.....
T Consensus 417 ~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~ 496 (888)
T KOG0306|consen 417 ASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKV 496 (888)
T ss_pred EEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCccccee
Confidence 35788999999999998 899999999999999764322 111111
Q ss_pred ----eeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEE--EecCCEEEEEeCCCcEE
Q 012007 317 ----AQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCL--AAAGNLVFSGSADRNIC 390 (473)
Q Consensus 317 ----~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~~~dg~i~ 390 (473)
......-...|.|+.++||+++|+++-.|.+|+||-+.+. ...-.+.||..+|.|+ +||+++++||+.|.+|+
T Consensus 497 lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl-KFflsLYGHkLPV~smDIS~DSklivTgSADKnVK 575 (888)
T KOG0306|consen 497 LSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL-KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVK 575 (888)
T ss_pred eeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce-eeeeeecccccceeEEeccCCcCeEEeccCCCceE
Confidence 1123345678999999999999999999999999999874 4445788999999886 58899999999999999
Q ss_pred EEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCCCCcccc
Q 012007 391 LWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGLHSPTQM 468 (473)
Q Consensus 391 iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~~~~~~~ 468 (473)
||-++- +.|-..+-+|...|.++.|.|... +++|+|.|+.|+-||-...+.......+...+
T Consensus 576 iWGLdF---GDCHKS~fAHdDSvm~V~F~P~~~-------------~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev 637 (888)
T KOG0306|consen 576 IWGLDF---GDCHKSFFAHDDSVMSVQFLPKTH-------------LFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEV 637 (888)
T ss_pred Eecccc---chhhhhhhcccCceeEEEEcccce-------------eEEEecCcceEEeechhhhhhheeeccchhee
Confidence 999887 578888899999999999999876 89999999999999977665444443333333
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-31 Score=219.57 Aligned_cols=249 Identities=20% Similarity=0.325 Sum_probs=211.1
Q ss_pred cccccccCcccEEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeE
Q 012007 153 EFSGFKSNSGLVKAIIISGD-SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231 (473)
Q Consensus 153 ~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (473)
.+..+.+|.+.|..++|+|- |..||+|+.|+.|++|+...+.......+ +-
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~v----------------------------ld 57 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTV----------------------------LD 57 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEe----------------------------cc
Confidence 34567889999999999998 88999999999999999985332111111 11
Q ss_pred eeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC--CeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCccc
Q 012007 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD--CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQ 308 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~--~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~ 308 (473)
-+|+..|.+++|+|.|++|++|+.|.++.||.-.. .+++..+++|...|.|++|+++| +|++++.|..|-||.+..+
T Consensus 58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded 137 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED 137 (312)
T ss_pred ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC
Confidence 14999999999999999999999999999998764 47899999999999999999998 9999999999999998733
Q ss_pred CCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC--CcccccceeecCcceEEEEEec--CCEEEEEe
Q 012007 309 GKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE--KHLSHGGVLRGHKMAVLCLAAA--GNLVFSGS 384 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~ 384 (473)
........+.+|...|..+.|+|...+|++++.|.+|++|+-. ........+.+|...|.+++|+ |..|++++
T Consensus 138 ---dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s 214 (312)
T KOG0645|consen 138 ---DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS 214 (312)
T ss_pred ---CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEec
Confidence 4556678899999999999999999999999999999999765 3455667889999999888765 88999999
Q ss_pred CCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 385 ADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 385 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
.|++|+||..... .-..|...+..++|. ++ .|+|++.|+.|+++.-..
T Consensus 215 dD~tv~Iw~~~~~-------~~~~~sr~~Y~v~W~-~~--------------~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 215 DDGTVSIWRLYTD-------LSGMHSRALYDVPWD-NG--------------VIASGGGDDAIRLFKESD 262 (312)
T ss_pred CCcceEeeeeccC-------cchhcccceEeeeec-cc--------------ceEeccCCCEEEEEEecC
Confidence 9999999986641 113478899999999 44 799999999999999875
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-32 Score=246.92 Aligned_cols=285 Identities=19% Similarity=0.292 Sum_probs=240.2
Q ss_pred eeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q 012007 117 GSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSR 192 (473)
Q Consensus 117 ~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~ 192 (473)
+.+..|...|.++.+. ..+++++-.+|.|.|||.. ..++.+.-...+|.+..|-+..+++++|+.|..|+||+..+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 3455578888888765 6699999999999999854 56777888889999999999999999999999999999999
Q ss_pred CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC-CeeeE
Q 012007 193 KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD-CKCLE 271 (473)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~-~~~~~ 271 (473)
.+.+..+. .|.+.|.|++.+|...++++++.|-+|++||.+. ..+.+
T Consensus 87 ~ekV~~Fe--------------------------------AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~q 134 (794)
T KOG0276|consen 87 GEKVKTFE--------------------------------AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQ 134 (794)
T ss_pred ceeeEEee--------------------------------ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeee
Confidence 88666555 3999999999999999999999999999999975 47889
Q ss_pred EeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC--CEEEEeCCCCc
Q 012007 272 SINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES--AVVYCGSSDGL 347 (473)
Q Consensus 272 ~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~~~dg~ 347 (473)
++.+|...|.+++|.|.. .+++++-|++|++|.+. ...+..++.+|...|+++.+-+.| .+|++|+.|.+
T Consensus 135 tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslg------s~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t 208 (794)
T KOG0276|consen 135 TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLG------SPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT 208 (794)
T ss_pred EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcC------CCCCceeeeccccCcceEEeccCCCcceEEecCCCce
Confidence 999999999999999986 99999999999999985 333567788999999999998844 79999999999
Q ss_pred EEEEecCCcccccceeecCcceEEEEEec--CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCC
Q 012007 348 VNFWECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHD 425 (473)
Q Consensus 348 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 425 (473)
|+|||.++. .+.+.+.||...|.+..+. =.++++|++||+++||+..+ .+....+.---+.|.||+-.+...
T Consensus 209 iKvWDyQtk-~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T---y~lE~tLn~gleRvW~I~~~k~~~-- 282 (794)
T KOG0276|consen 209 IKVWDYQTK-SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKT---YKLEKTLNYGLERVWCIAAHKGDG-- 282 (794)
T ss_pred EEEeecchH-HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcc---eehhhhhhcCCceEEEEeecCCCC--
Confidence 999999984 5567889999888776665 56899999999999999887 666666666678899999888776
Q ss_pred cccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 426 HEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 426 ~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
.++.|.+.|.| +.++....|
T Consensus 283 -----------~i~vG~Deg~i-~v~lgreeP 302 (794)
T KOG0276|consen 283 -----------KIAVGFDEGSV-TVKLGREEP 302 (794)
T ss_pred -----------eEEEeccCCcE-EEEccCCCC
Confidence 56776666554 344444433
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-32 Score=221.76 Aligned_cols=260 Identities=21% Similarity=0.323 Sum_probs=216.7
Q ss_pred CCcEEEeeCC--cccccccc--CcccEEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCC
Q 012007 142 SKNIRVWKNL--KEFSGFKS--NSGLVKAIIISGDS-NKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVN 216 (473)
Q Consensus 142 dg~i~vwd~~--~~~~~~~~--h~~~V~~l~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (473)
.|.+.|-+.. +.+..+.. -...+..++|+++. +.+++++.||++++||+.......
T Consensus 37 ~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi------------------- 97 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPI------------------- 97 (311)
T ss_pred CceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcch-------------------
Confidence 5788888764 33333322 35679999999864 688899999999999964332211
Q ss_pred CcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEE
Q 012007 217 PKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFT 293 (473)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s 293 (473)
..+..|...|.++.|++ .+..++++++|++|++|+....+.+.++.+|...|....|+|.. ++++
T Consensus 98 ------------~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas 165 (311)
T KOG0277|consen 98 ------------HKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFAS 165 (311)
T ss_pred ------------hHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEE
Confidence 11224999999999998 66788888999999999999999999999999999999999874 9999
Q ss_pred EeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc-CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEE
Q 012007 294 GSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLC 372 (473)
Q Consensus 294 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 372 (473)
++.|+.+++||++..++ ...+..|...|.++.|+. +..+|++|+.|+.|++||+++...+...+.+|...|..
T Consensus 166 ~Sgd~~l~lwdvr~~gk------~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRk 239 (311)
T KOG0277|consen 166 ASGDGTLRLWDVRSPGK------FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRK 239 (311)
T ss_pred ccCCceEEEEEecCCCc------eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEE
Confidence 99999999999985432 233778999999999998 66889999999999999999988888899999999988
Q ss_pred EEec---CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEE
Q 012007 373 LAAA---GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKV 449 (473)
Q Consensus 373 ~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~i 449 (473)
+.++ ..+|++++.|-+++|||.... ..++.+..-|+.-|..+.|++.... ++|+++.|+.++|
T Consensus 240 vk~Sph~~~lLaSasYDmT~riw~~~~~--ds~~e~~~~HtEFv~g~Dws~~~~~------------~vAs~gWDe~l~V 305 (311)
T KOG0277|consen 240 VKFSPHHASLLASASYDMTVRIWDPERQ--DSAIETVDHHTEFVCGLDWSLFDPG------------QVASTGWDELLYV 305 (311)
T ss_pred EecCcchhhHhhhccccceEEecccccc--hhhhhhhhccceEEeccccccccCc------------eeeecccccceee
Confidence 8765 578999999999999998853 4567777889999999999998664 8999999999999
Q ss_pred EEc
Q 012007 450 WRV 452 (473)
Q Consensus 450 W~i 452 (473)
|+-
T Consensus 306 w~p 308 (311)
T KOG0277|consen 306 WNP 308 (311)
T ss_pred ecc
Confidence 984
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=226.87 Aligned_cols=325 Identities=19% Similarity=0.281 Sum_probs=248.1
Q ss_pred cccceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEE
Q 012007 112 CNGLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187 (473)
Q Consensus 112 ~~~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~v 187 (473)
...+++.+.||.+.|+.++.+ ...+.+++.|.+.+||.+. .++..+.+|.+.|++|.|++.+.++++++.|++-.|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 345788899999999999987 4589999999999999865 788899999999999999999999999999999999
Q ss_pred EeCCCCCeeeE----Ee------eccccccceeEeecC-CCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC
Q 012007 188 WKVSRKNASVH----KR------VGSLPTFKDYVKSSV-NPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD 256 (473)
Q Consensus 188 wd~~~~~~~~~----~~------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d 256 (473)
|...-.-.... .. ............+.. .+... -+.....+.+|...|.+..|...|+.++++++|
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~t---iRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWD 293 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHT---IRVPLMRLTGHRAVVSACDWLAGGQQMVTASWD 293 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCce---eeeeeeeeeccccceEehhhhcCcceeeeeecc
Confidence 98321110000 00 000000000011000 00001 111223455799999999999999999999999
Q ss_pred CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC
Q 012007 257 KTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE 335 (473)
Q Consensus 257 g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 335 (473)
.+..+||+++++.+..+.+|+...+.++-+|.. ++++.+.|.+.++||.+ .....+..+.+|...|+++.|.-+
T Consensus 294 RTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR-----eaI~sV~VFQGHtdtVTS~vF~~d 368 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR-----EAIQSVAVFQGHTDTVTSVVFNTD 368 (481)
T ss_pred ccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccch-----hhcceeeeecccccceeEEEEecC
Confidence 999999999999999999999999999998887 78899999999999998 455567889999999999999976
Q ss_pred CCEEEEeCCCCcEEEEecCCcccccceeecC-cceEEEEEecCCEEEEEeCCCcEEEEecCCCCcee-EEEEecCCCCce
Q 012007 336 SAVVYCGSSDGLVNFWECEKHLSHGGVLRGH-KMAVLCLAAAGNLVFSGSADRNICLWRREESGAHS-CLAVLTGHTGPV 413 (473)
Q Consensus 336 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~h~~~V 413 (473)
.+ +++|+.|.+|++||+++...+...+... ...-..++..+..++.--.+..|++||++...... +-..-.+|...|
T Consensus 369 d~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV 447 (481)
T KOG0300|consen 369 DR-VVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMV 447 (481)
T ss_pred Cc-eeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceee
Confidence 54 7799999999999999876665554432 22334455556788888888999999998732211 122345899999
Q ss_pred eEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 414 KCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
+|++|..+..-+ -|+++|.|..+.-|++....
T Consensus 448 ~c~AW~eehp~c-----------nLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 448 TCCAWLEEHPAC-----------NLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred eeeeccccCccc-----------ccccccccceeeeeEecccC
Confidence 999999876521 48999999999999997654
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-31 Score=254.40 Aligned_cols=253 Identities=27% Similarity=0.441 Sum_probs=210.3
Q ss_pred CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 160 NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
+...|.++.|+++|++|++++.|+.+++|+........... ..+|...|.
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~------------------------------l~~h~~~v~ 207 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRE------------------------------LSGHTRGVS 207 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcc------------------------------cccccccee
Confidence 47889999999999999999999999999996554200000 025999999
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEc-CCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeee
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRI-SDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLA 317 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~-~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 317 (473)
+++|+|++.++++++.|++|+|||+ ..+..++++++|...|++++|+|.+ ++++|+.|++|++||++. ....
T Consensus 208 ~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~------~~~~ 281 (456)
T KOG0266|consen 208 DVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT------GECV 281 (456)
T ss_pred eeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC------CeEE
Confidence 9999999999999999999999999 5568999999999999999999998 999999999999999974 4467
Q ss_pred eeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccc-cceeecCcce--E--EEEEecCCEEEEEeCCCcEEEE
Q 012007 318 QVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSH-GGVLRGHKMA--V--LCLAAAGNLVFSGSADRNICLW 392 (473)
Q Consensus 318 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~--v--~~~~~~~~~l~s~~~dg~i~iw 392 (473)
..+.+|...|++++|++++++|++++.|+.|++||+.++... ...+.++... + .++++++.+|++++.|+.+++|
T Consensus 282 ~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w 361 (456)
T KOG0266|consen 282 RKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLW 361 (456)
T ss_pred EeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEE
Confidence 889999999999999999999999999999999999987631 2333333333 3 5566789999999999999999
Q ss_pred ecCCCCceeEEEEecCCCCce---eEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCCCC
Q 012007 393 RREESGAHSCLAVLTGHTGPV---KCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGLHS 464 (473)
Q Consensus 393 d~~~~~~~~~~~~~~~h~~~V---~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~~~ 464 (473)
|+.. ..++..+.+|...+ .+....+.+. ++++|+.|+.|++|++.++........+
T Consensus 362 ~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~i~sg~~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 362 DLRS---GKSVGTYTGHSNLVRCIFSPTLSTGGK-------------LIYSGSEDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred EccC---CcceeeecccCCcceeEecccccCCCC-------------eEEEEeCCceEEEEeCCccchhhhhcCC
Confidence 9998 57788888887753 3334455666 8999999999999999986655444333
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=233.45 Aligned_cols=278 Identities=22% Similarity=0.345 Sum_probs=228.6
Q ss_pred cccEEE--EEecCCEEEEeeCCCcEEEeeCC--cc--------ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 123 EGHIYS--LAASGDLLYTGSDSKNIRVWKNL--KE--------FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 123 ~~~V~~--~~~~g~~l~tg~~dg~i~vwd~~--~~--------~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
..++-| ++|||+||++|+.||.|.|||.. +. ...+.-+..+|.|+.|+.|..+|++|+.||.|+||.+
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 444544 67889999999999999999843 11 2235568899999999999999999999999999999
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL 270 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~ 270 (473)
.++.+...+.. .|...|+|+.|+.|+..+++++.|.++++.-+.+|+++
T Consensus 293 ~tG~ClRrFdr-------------------------------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~L 341 (508)
T KOG0275|consen 293 ETGQCLRRFDR-------------------------------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCL 341 (508)
T ss_pred ecchHHHHhhh-------------------------------hhccCeeEEEEccCcchhhcccccceEEEeccccchhH
Confidence 99987665543 29999999999999999999999999999999999999
Q ss_pred EEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC-CCEEEEeCCCCcE
Q 012007 271 ESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE-SAVVYCGSSDGLV 348 (473)
Q Consensus 271 ~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i 348 (473)
.++++|...|+...|.++| .+++++.||+|++|+..+.+.... ....+...+|..+..-|. -..++++...++|
T Consensus 342 KEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~T----fk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv 417 (508)
T KOG0275|consen 342 KEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLST----FKPLGTDYPVNSVILLPKNPEHFIVCNRSNTV 417 (508)
T ss_pred HHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhh----ccCCCCcccceeEEEcCCCCceEEEEcCCCeE
Confidence 9999999999999999998 999999999999999875432111 122335667888887774 4678888889999
Q ss_pred EEEecCCccccc---ceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCC
Q 012007 349 NFWECEKHLSHG---GVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHD 425 (473)
Q Consensus 349 ~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 425 (473)
.|.++....... ....+...-..+++|.|.++++.++|+.++.|.+.+ +.+...+.-|...|-.++-+|..+
T Consensus 418 ~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~s---G~LE~tl~VhEkdvIGl~HHPHqN-- 492 (508)
T KOG0275|consen 418 YIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLS---GKLERTLPVHEKDVIGLTHHPHQN-- 492 (508)
T ss_pred EEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeec---CceeeeeecccccccccccCcccc--
Confidence 999987532111 111222333466789999999999999999999998 466777888999999999999988
Q ss_pred cccccCCCccEEEEEeeCCCcEEEEE
Q 012007 426 HEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 426 ~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
++|+-+.||.+++|.
T Consensus 493 -----------llAsYsEDgllKLWk 507 (508)
T KOG0275|consen 493 -----------LLASYSEDGLLKLWK 507 (508)
T ss_pred -----------hhhhhcccchhhhcC
Confidence 899999999999996
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-30 Score=229.13 Aligned_cols=277 Identities=21% Similarity=0.304 Sum_probs=234.7
Q ss_pred ccEEEEEecC--CEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEE
Q 012007 124 GHIYSLAASG--DLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHK 199 (473)
Q Consensus 124 ~~V~~~~~~g--~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 199 (473)
..+.++...+ ..++||+.|.++.++|.. +.+..++||...|+.+.++++...+++++.|..|+||...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 3466777654 799999999999999854 678899999999999999999999999999999999998765532222
Q ss_pred eeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec--CC
Q 012007 200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA--HD 277 (473)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--~~ 277 (473)
. .|..+|+.+..+|.|.||++++.|++..+.|++++.++..... ..
T Consensus 300 ~--------------------------------~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~ 347 (506)
T KOG0289|consen 300 R--------------------------------PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSD 347 (506)
T ss_pred c--------------------------------cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecccc
Confidence 2 3999999999999999999999999999999999998877654 33
Q ss_pred CceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCc
Q 012007 278 DAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH 356 (473)
Q Consensus 278 ~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~ 356 (473)
-.+++.+|+||| .|.+|..||.|++||+..+ .....+.+|.++|..++|+.+|.+|++++.|+.|++||+++.
T Consensus 348 v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~------~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 348 VEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ------TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL 421 (506)
T ss_pred ceeEEeeEcCCceEEeccCCCceEEEEEcCCc------cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh
Confidence 468999999999 6678999999999999743 246778899999999999999999999999999999999987
Q ss_pred ccccceeecCcceEEEEEec--CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCc
Q 012007 357 LSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQ 434 (473)
Q Consensus 357 ~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~ 434 (473)
.............+.++++| |.+|+.++.|=.|++++-.+ ..+.++..+..|.+..+++.|.....
T Consensus 422 ~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~-k~W~~~~~~~~~sg~st~v~Fg~~aq----------- 489 (506)
T KOG0289|consen 422 KNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT-KSWTEIKELADHSGLSTGVRFGEHAQ----------- 489 (506)
T ss_pred cccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc-ccceeeehhhhcccccceeeecccce-----------
Confidence 66555544444456565555 99999998887777777555 55889999999999999999999988
Q ss_pred cEEEEEeeCCCcEEEEEc
Q 012007 435 RWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 435 ~~~l~s~s~Dg~v~iW~i 452 (473)
+++++|.|..++++.+
T Consensus 490 --~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 490 --YLASTSMDAILRLYAL 505 (506)
T ss_pred --EEeeccchhheEEeec
Confidence 8999999999998865
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=253.75 Aligned_cols=252 Identities=25% Similarity=0.397 Sum_probs=218.9
Q ss_pred cccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeec
Q 012007 155 SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRH 234 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
..|...+..|..++|+|...+++++-..|.|++||..-+.+...+. .|
T Consensus 3 tkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFd--------------------------------eH 50 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFD--------------------------------EH 50 (1202)
T ss_pred chhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhh--------------------------------cc
Confidence 3456677899999999999999999999999999987665443332 49
Q ss_pred cCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcc
Q 012007 235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTK 313 (473)
Q Consensus 235 ~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~ 313 (473)
.++|..++|+|++.++++|+.|..|+||+..+.+++.++.+|.+.|..+.|++.- +|++++.|.+|+||+.. .
T Consensus 51 dGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq------s 124 (1202)
T KOG0292|consen 51 DGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ------S 124 (1202)
T ss_pred CCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEecc------C
Confidence 9999999999999999999999999999999999999999999999999999886 99999999999999996 3
Q ss_pred eeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCc----------------------------ccccceeec
Q 012007 314 HCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH----------------------------LSHGGVLRG 365 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~----------------------------~~~~~~~~~ 365 (473)
...+..+.+|...|.|..|+|....+++++.|.+|++||+..- .....++.|
T Consensus 125 r~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG 204 (1202)
T KOG0292|consen 125 RKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG 204 (1202)
T ss_pred CceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc
Confidence 3457889999999999999999999999999999999997421 112345678
Q ss_pred CcceEEEEEecC--CEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeC
Q 012007 366 HKMAVLCLAAAG--NLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSL 443 (473)
Q Consensus 366 ~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~ 443 (473)
|.-.|.-.++.+ .++++|+.|..|++|.++..+. -.+.+..||.+.|.++-|+|... +++|.|.
T Consensus 205 HDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa-WEvDtcrgH~nnVssvlfhp~q~-------------lIlSnsE 270 (1202)
T KOG0292|consen 205 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-WEVDTCRGHYNNVSSVLFHPHQD-------------LILSNSE 270 (1202)
T ss_pred cccccceEEecCCcceEEecCCcceeeEEEeccccc-eeehhhhcccCCcceEEecCccc-------------eeEecCC
Confidence 888887777766 7999999999999999987443 34667789999999999999887 8999999
Q ss_pred CCcEEEEEcCCCCCC
Q 012007 444 DKSVKVWRVSEHAPD 458 (473)
Q Consensus 444 Dg~v~iW~i~~~~~~ 458 (473)
|++|+|||+......
T Consensus 271 DksirVwDm~kRt~v 285 (1202)
T KOG0292|consen 271 DKSIRVWDMTKRTSV 285 (1202)
T ss_pred CccEEEEecccccce
Confidence 999999999877543
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.7e-30 Score=265.80 Aligned_cols=270 Identities=18% Similarity=0.235 Sum_probs=214.4
Q ss_pred CCcEEEeeCCcc-------ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeec
Q 012007 142 SKNIRVWKNLKE-------FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSS 214 (473)
Q Consensus 142 dg~i~vwd~~~~-------~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (473)
+|.+++|+.... ...+..|.+.|.+++|+++|++|++|+.|+.|+||++......... .
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~--~------------ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRD--I------------ 522 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccc--c------------
Confidence 566777764421 1234568999999999999999999999999999997642100000 0
Q ss_pred CCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcC-CC-EE
Q 012007 215 VNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGF-DS-LV 291 (473)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~-~~-~l 291 (473)
........+...|.+++|++ ++.+|++++.||+|++||+.+++.+..+.+|...|++++|++ ++ +|
T Consensus 523 -----------~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L 591 (793)
T PLN00181 523 -----------HYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLL 591 (793)
T ss_pred -----------ccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEE
Confidence 00011122456789999987 578999999999999999999999999999999999999986 44 89
Q ss_pred EEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEc-cCCCEEEEeCCCCcEEEEecCCcccccceeecCcceE
Q 012007 292 FTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVN-QESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAV 370 (473)
Q Consensus 292 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 370 (473)
++|+.||.|++||++... ....+. +...|.++.|+ +++.+|++|+.||.|++||+++.......+.+|...|
T Consensus 592 ~Sgs~Dg~v~iWd~~~~~------~~~~~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V 664 (793)
T PLN00181 592 ASGSDDGSVKLWSINQGV------SIGTIK-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTV 664 (793)
T ss_pred EEEcCCCEEEEEECCCCc------EEEEEe-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCE
Confidence 999999999999997432 122333 34678999995 5789999999999999999987654455677899999
Q ss_pred EEEEe-cCCEEEEEeCCCcEEEEecCCCC---ceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCc
Q 012007 371 LCLAA-AGNLVFSGSADRNICLWRREESG---AHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKS 446 (473)
Q Consensus 371 ~~~~~-~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~ 446 (473)
.++.+ ++.+|++++.|++|++||+.... ...++..+.+|...+.+++|++++. +|++|+.|+.
T Consensus 665 ~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~-------------~lasgs~D~~ 731 (793)
T PLN00181 665 SYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDG-------------YIATGSETNE 731 (793)
T ss_pred EEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCC-------------EEEEEeCCCE
Confidence 88876 58899999999999999997521 2356788999999999999999988 8999999999
Q ss_pred EEEEEcCCCC
Q 012007 447 VKVWRVSEHA 456 (473)
Q Consensus 447 v~iW~i~~~~ 456 (473)
|++|+.....
T Consensus 732 v~iw~~~~~~ 741 (793)
T PLN00181 732 VFVYHKAFPM 741 (793)
T ss_pred EEEEECCCCC
Confidence 9999986553
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.6e-30 Score=240.54 Aligned_cols=281 Identities=25% Similarity=0.385 Sum_probs=235.5
Q ss_pred eeeeeecccEEEEEecCC--EEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q 012007 117 GSIVRKEGHIYSLAASGD--LLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSR 192 (473)
Q Consensus 117 ~~l~~h~~~V~~~~~~g~--~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~ 192 (473)
-++.||...|.+++++.+ .+++|+ .+.|+||+.. +++.++. .+-+.+..|.|.++++++|...|.+.++|+.+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTIT--CGYILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEec--cccEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 457789999999988744 444444 5799999855 5566654 34899999999999999999999999999988
Q ss_pred CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC-----C
Q 012007 193 KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD-----C 267 (473)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~-----~ 267 (473)
........ .|.++|+.++.+||+..+++|+.|.+|++||..- +
T Consensus 444 ~~l~Eti~--------------------------------AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~g 491 (888)
T KOG0306|consen 444 ASLVETIR--------------------------------AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPG 491 (888)
T ss_pred hhhhhhhh--------------------------------ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCc
Confidence 76544333 3999999999999999999999999999999741 1
Q ss_pred e--eeEEee-----cCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEE
Q 012007 268 K--CLESIN-----AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVV 339 (473)
Q Consensus 268 ~--~~~~~~-----~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l 339 (473)
. .+..+. .-.+.|.|+.++|++ +|+++--|.+++||-++ ...+...+.+|.-+|.||.++||++++
T Consensus 492 t~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflD------tlKFflsLYGHkLPV~smDIS~DSkli 565 (888)
T KOG0306|consen 492 TQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLD------TLKFFLSLYGHKLPVLSMDISPDSKLI 565 (888)
T ss_pred ccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEec------ceeeeeeecccccceeEEeccCCcCeE
Confidence 1 111111 235689999999999 88888899999999886 344567889999999999999999999
Q ss_pred EEeCCCCcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEE
Q 012007 340 YCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLA 417 (473)
Q Consensus 340 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~ 417 (473)
++|+.|..|++|-+.-+..+ ..+.+|...|+++.+ ...++++++.|+.|+-||-.. ..+++.+.+|...|.|++
T Consensus 566 vTgSADKnVKiWGLdFGDCH-KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k---Fe~iq~L~~H~~ev~cLa 641 (888)
T KOG0306|consen 566 VTGSADKNVKIWGLDFGDCH-KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK---FEEIQKLDGHHSEVWCLA 641 (888)
T ss_pred EeccCCCceEEeccccchhh-hhhhcccCceeEEEEcccceeEEEecCcceEEeechhh---hhhheeeccchheeeeeE
Confidence 99999999999998876555 466789999988765 577899999999999999887 789999999999999999
Q ss_pred EecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 418 VEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
..|+|. +++++|.|.+|++|.....
T Consensus 642 v~~~G~-------------~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 642 VSPNGS-------------FVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred EcCCCC-------------eEEeccCCceeEeeeccCc
Confidence 999999 9999999999999998764
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=239.83 Aligned_cols=255 Identities=21% Similarity=0.267 Sum_probs=218.7
Q ss_pred CccccccccCcccEEEEEEeC-CCCEEEEEeCCCeEEEEeCCCC-CeeeEEeeccccccceeEeecCCCcceEEEeecce
Q 012007 151 LKEFSGFKSNSGLVKAIIISG-DSNKIFTGHQDGKIRIWKVSRK-NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRS 228 (473)
Q Consensus 151 ~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (473)
.+.+..+.+|+..|+++.|.| .+.+|++|+.|+.|+||++... .++..+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf----------------------------- 254 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF----------------------------- 254 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh-----------------------------
Confidence 356778999999999999999 8899999999999999999773 332222
Q ss_pred eeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCc
Q 012007 229 VLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRE 306 (473)
Q Consensus 229 ~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~ 306 (473)
.+|..+|..++|+.+|..+++++.|+.|++||+++|+++..+. ....+.|+.++|++ .+++|+.|+.|+.||++
T Consensus 255 ---~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR 330 (503)
T KOG0282|consen 255 ---KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR 330 (503)
T ss_pred ---hcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEecc
Confidence 2599999999999999999999999999999999999999987 45678999999987 89999999999999998
Q ss_pred ccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccc--eeecCcceEEEEEecCCEEEEEe
Q 012007 307 LQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGG--VLRGHKMAVLCLAAAGNLVFSGS 384 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~ 384 (473)
.++ +++....|-+.|..+.|-++++.+++.+.|+.++||+.+....... ....|..+.+.+.|+++++++-+
T Consensus 331 s~k------vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs 404 (503)
T KOG0282|consen 331 SGK------VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS 404 (503)
T ss_pred chH------HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc
Confidence 543 5778888999999999999999999999999999999987554433 34457778888899999999999
Q ss_pred CCCcEEEEecCCCCceeEEEEecCCC--CceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 385 ADRNICLWRREESGAHSCLAVLTGHT--GPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 385 ~dg~i~iwd~~~~~~~~~~~~~~~h~--~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
.|+.|.+|.+...-.......+.||. +.-..+.|+||+. +|++|+.||.+.+||..+.+.
T Consensus 405 ~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~-------------~l~SGdsdG~v~~wdwkt~kl 466 (503)
T KOG0282|consen 405 MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR-------------TLCSGDSDGKVNFWDWKTTKL 466 (503)
T ss_pred cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC-------------eEEeecCCccEEEeechhhhh
Confidence 99999999987644445556677884 3456789999999 899999999999999987654
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-31 Score=230.19 Aligned_cols=284 Identities=18% Similarity=0.283 Sum_probs=232.2
Q ss_pred ccceeeeeeecccEEEEEecCC---EEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEE
Q 012007 113 NGLIGSIVRKEGHIYSLAASGD---LLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187 (473)
Q Consensus 113 ~~~~~~l~~h~~~V~~~~~~g~---~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~v 187 (473)
..+++.|.||.+.|.|++-+.+ .+|+|+.||.|+|||+. .++..++.|.+.|..|++.. ..+++++.|.+|+.
T Consensus 56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQ 133 (433)
T ss_pred ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceee
Confidence 3578899999999999998744 69999999999999976 56889999999999999976 58999999999999
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~ 267 (473)
|.++... .. .+.....+..|.-+..+..+++++. .|.|||....
T Consensus 134 wk~~~~p-~~---------------------------------tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~ 177 (433)
T KOG0268|consen 134 WKIDGPP-LH---------------------------------TILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRD 177 (433)
T ss_pred eeccCCc-ce---------------------------------eeeccccccccccccccccccccCc--eeeecccccC
Confidence 9987631 11 1114456677777777888999886 5999999999
Q ss_pred eeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC
Q 012007 268 KCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD 345 (473)
Q Consensus 268 ~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d 345 (473)
.++..+.-..+.|.++.++|.. .|++|+.|+.|.+||++.... +..... ...-+.|+|+|++..+.+++.|
T Consensus 178 ~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P-----l~KVi~--~mRTN~IswnPeafnF~~a~ED 250 (433)
T KOG0268|consen 178 NPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP-----LKKVIL--TMRTNTICWNPEAFNFVAANED 250 (433)
T ss_pred CccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc-----cceeee--eccccceecCccccceeecccc
Confidence 9999999888899999999986 788888999999999985432 211111 2334679999988889999999
Q ss_pred CcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 346 GLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
..++.||++....+.....+|...|+.+.+ .|+-+++|+.|.+|+||..+.+.......+ .....|.|+.|+-|.+
T Consensus 251 ~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht--kRMq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 251 HNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT--KRMQHVFCVKYSMDSK 328 (433)
T ss_pred ccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH--hhhheeeEEEEecccc
Confidence 999999999888888899999999988765 599999999999999999987432211111 1234699999999999
Q ss_pred CCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 424 HDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 424 ~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
++++||+|+.|++|.-...+
T Consensus 329 -------------yi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 329 -------------YIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred -------------EEEecCCCcceeeeecchhh
Confidence 99999999999999976543
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.9e-30 Score=224.02 Aligned_cols=272 Identities=22% Similarity=0.362 Sum_probs=215.6
Q ss_pred cccceeeeeeecccEEEEEec-----CCEEEEeeCCCcEEEeeCC------ccccccccCcccEEEEEEeCCCCEEEEEe
Q 012007 112 CNGLIGSIVRKEGHIYSLAAS-----GDLLYTGSDSKNIRVWKNL------KEFSGFKSNSGLVKAIIISGDSNKIFTGH 180 (473)
Q Consensus 112 ~~~~~~~l~~h~~~V~~~~~~-----g~~l~tg~~dg~i~vwd~~------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~ 180 (473)
.+..+..+.||.+.|.++++- ...+++++.|.++++|... +.+..-+||...|.++...++|.++++|+
T Consensus 133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS 212 (423)
T KOG0313|consen 133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGS 212 (423)
T ss_pred CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeec
Confidence 455678899999999977752 3479999999999999643 33444569999999999999999999999
Q ss_pred CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcc-eEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCE
Q 012007 181 QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKN-YVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTL 259 (473)
Q Consensus 181 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v 259 (473)
.|..|+||+................. .+... .....+.......+|.++|.++.|++ ...++++++|.+|
T Consensus 213 ~D~~lkiWs~~~~~~~~~E~~s~~rr--------k~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTI 283 (423)
T KOG0313|consen 213 WDTMLKIWSVETDEEDELESSSNRRR--------KKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTI 283 (423)
T ss_pred ccceeeecccCCCccccccccchhhh--------hhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceE
Confidence 99999999944332211111100000 00000 00112233455668999999999987 7789999999999
Q ss_pred EEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC-C
Q 012007 260 KVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES-A 337 (473)
Q Consensus 260 ~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~ 337 (473)
+.||++++..+..+.. ...++|+..++.. +|++|+.|..|++||.+.+ ......+.+.+|.+.|.++.|+|.. .
T Consensus 284 k~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~---~gs~v~~s~~gH~nwVssvkwsp~~~~ 359 (423)
T KOG0313|consen 284 KVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG---DGSVVSQSLIGHKNWVSSVKWSPTNEF 359 (423)
T ss_pred EEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCC---CCceeEEeeecchhhhhheecCCCCce
Confidence 9999999999888874 4578999998876 8999999999999999865 3445667889999999999999955 6
Q ss_pred EEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEec-CCEEEEEeCCCcEEEEecCC
Q 012007 338 VVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA-GNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 338 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~ 396 (473)
.|++++.|+++++||++....+...+.+|...|+++.+. +.++++|+.|++|+|+....
T Consensus 360 ~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 360 QLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred EEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEecccc
Confidence 788999999999999999887778899999999999997 66999999999999997543
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=248.08 Aligned_cols=275 Identities=20% Similarity=0.274 Sum_probs=200.6
Q ss_pred ccc-cCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccc-------------c--ccc-e---------
Q 012007 156 GFK-SNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSL-------------P--TFK-D--------- 209 (473)
Q Consensus 156 ~~~-~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-------------~--~~~-~--------- 209 (473)
.+. .|.++|.++.|++||+|||+||.||.|+||.+...+.......... | ... .
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 344 7999999999999999999999999999999876322100000000 0 000 0
Q ss_pred ---eEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEc
Q 012007 210 ---YVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAG 286 (473)
Q Consensus 210 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~ 286 (473)
......-+.....+.......+.||.+.|..|.|+.+ ++|++++.|.+|++|++...+|+..|. |.+.|+|++|+
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFn 418 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFN 418 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEec
Confidence 0000011111122223333445689999999999975 589999999999999999999999997 99999999999
Q ss_pred CCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccc---
Q 012007 287 FDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGG--- 361 (473)
Q Consensus 287 ~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--- 361 (473)
|-. ++++|+-||.|+||++.. .. +.....-..-|++++|.|+|++.++|+.+|.+++|+.........
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d------~~-Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISD------KK-VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred ccCCCcEeecccccceEEeecCc------Ce-eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 865 999999999999999852 22 222333347899999999999999999999999999875322111
Q ss_pred -----eeecCcceEEEEEec---CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCC--ceeEEEEecCCCCCcccccC
Q 012007 362 -----VLRGHKMAVLCLAAA---GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTG--PVKCLAVEEDRDHDHEYHQK 431 (473)
Q Consensus 362 -----~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~--~V~~l~~~~~~~~~~~~~~~ 431 (473)
....|. .|+.|.+. ...|++.+.|..|+|||.+. ..++..++|+.. .=....|+.|++
T Consensus 492 ~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~---~~lv~KfKG~~n~~SQ~~Asfs~Dgk-------- 559 (712)
T KOG0283|consen 492 RLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD---KDLVHKFKGFRNTSSQISASFSSDGK-------- 559 (712)
T ss_pred eeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc---hhhhhhhcccccCCcceeeeEccCCC--------
Confidence 111233 67777654 44578888899999999977 566777776533 335678889998
Q ss_pred CCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 432 GDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 432 ~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
+|+++++|..|+||++....
T Consensus 560 -----~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 560 -----HIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred -----EEEEeecCceEEEEeCCCCc
Confidence 89999999999999986543
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=208.15 Aligned_cols=279 Identities=17% Similarity=0.235 Sum_probs=224.2
Q ss_pred eeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCCcc----ccccccCcccEEEEEEeCC-CCEEEEEeCCCeEEEEe
Q 012007 117 GSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE----FSGFKSNSGLVKAIIISGD-SNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 117 ~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~~----~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~vwd 189 (473)
+.+.+|.+.|.+++++ |..|++|+.|++++||++... -....+|.+.|-.++|+|. ...|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5667888999888875 999999999999999987633 2346789999999999875 46899999999999999
Q ss_pred CCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee
Q 012007 190 VSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
+..+++..... ....=.-+.|+|+|.++++++.|..|.+.|.++.+.
T Consensus 94 ~r~~k~~~~i~---------------------------------~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~ 140 (313)
T KOG1407|consen 94 IRSGKCTARIE---------------------------------TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKI 140 (313)
T ss_pred eccCcEEEEee---------------------------------ccCcceEEEEcCCCCEEEEecCcccEEEEEecccce
Confidence 99887655443 223334578999999999999999999999999888
Q ss_pred eEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcE
Q 012007 270 LESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLV 348 (473)
Q Consensus 270 ~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i 348 (473)
+...+ ....++.+.|+.++ +++.....|.|.|.... ...+++.+..|.....||.|+|+|++||+|+.|..+
T Consensus 141 ~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp------sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlv 213 (313)
T KOG1407|consen 141 VNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYP------SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALV 213 (313)
T ss_pred eehhc-ccceeeeeeecCCCCEEEEecCCceEEEEecc------ccccccccccCCcceEEEEECCCCceEeecccccee
Confidence 77765 34456777776555 77777777999998763 555678899999999999999999999999999999
Q ss_pred EEEecCCcccccceeecCcceEEEE--EecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCc
Q 012007 349 NFWECEKHLSHGGVLRGHKMAVLCL--AAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDH 426 (473)
Q Consensus 349 ~iwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~ 426 (473)
.+||++.. .....+..+.-+|..+ +.+|++||+|++|..|-|=++.++ ..+..+ .+.++...++|+|...
T Consensus 214 SLWD~~EL-iC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetG---d~~~eI-~~~~~t~tVAWHPk~~--- 285 (313)
T KOG1407|consen 214 SLWDVDEL-ICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETG---DRVWEI-PCEGPTFTVAWHPKRP--- 285 (313)
T ss_pred eccChhHh-hhheeeccccCceEEEEeccCcceeeccCccceEEeEecccC---CeEEEe-eccCCceeEEecCCCc---
Confidence 99999864 4445666677677555 557999999999999999999985 334443 3678899999999987
Q ss_pred ccccCCCccEEEEEeeCC---------CcEEEEEcC
Q 012007 427 EYHQKGDQRWTVYSGSLD---------KSVKVWRVS 453 (473)
Q Consensus 427 ~~~~~~~~~~~l~s~s~D---------g~v~iW~i~ 453 (473)
+||-++.| |.|+++-+.
T Consensus 286 ----------LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 286 ----------LLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred ----------eeeEEecCCCCccccccceeEEecCC
Confidence 77776654 567777654
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=232.05 Aligned_cols=296 Identities=15% Similarity=0.279 Sum_probs=227.9
Q ss_pred eeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCCcc------cccccc-CcccEEEEEEeCCCCEEEEEeCCCeEEE
Q 012007 117 GSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE------FSGFKS-NSGLVKAIIISGDSNKIFTGHQDGKIRI 187 (473)
Q Consensus 117 ~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~~------~~~~~~-h~~~V~~l~~s~~~~~l~s~~~dg~i~v 187 (473)
..|.+|...|.++..+ |..|++|+.|-+|++||.... ++.+.. ....|++++|++.|..|++.+.....+|
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 4577788888888765 889999999999999996532 223322 3568999999999999999888899999
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC-CCEEEEEeCCCCEEEEEcCC
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISD 266 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~v~vwd~~~ 266 (473)
+|-+.........-. .|+ .......||...++|.+|+|. ...+++++.||++++||+.+
T Consensus 241 ~DRdG~~~~e~~KGD----------------QYI----~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~ 300 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGD----------------QYI----RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNN 300 (641)
T ss_pred EccCCceeeeeeccc----------------hhh----hhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCC
Confidence 998765433222110 000 011223369999999999994 56899999999999999986
Q ss_pred Cee-eEEee-----cCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCc--cEEEEEEccCCC
Q 012007 267 CKC-LESIN-----AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHEN--AVTALAVNQESA 337 (473)
Q Consensus 267 ~~~-~~~~~-----~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~v~~l~~~~~~~ 337 (473)
.+. +..++ +..-.++.++|++++ +|++|+.||.|.+|+.... ...........|.. .|++|+|+++|+
T Consensus 301 ~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~---~v~p~~~vk~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 301 TKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSR---TVRPVMKVKDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred chhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCc---ccccceEeeeccCCCCceeEEEeccccc
Confidence 543 23332 234478899999998 8999999999999997532 22333445567776 899999999999
Q ss_pred EEEEeCCCCcEEEEecCCccccccee----ecCcceEEEEEecCCEEEEEeC------CCcEEEEecCCCCceeEEEEec
Q 012007 338 VVYCGSSDGLVNFWECEKHLSHGGVL----RGHKMAVLCLAAAGNLVFSGSA------DRNICLWRREESGAHSCLAVLT 407 (473)
Q Consensus 338 ~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~ 407 (473)
+|++-+.|+.+++||++...++.... ......-+||+|+.++|++|.. .|.+++||..+ ...++.+.
T Consensus 378 ~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t---~d~v~ki~ 454 (641)
T KOG0772|consen 378 YLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT---LDTVYKID 454 (641)
T ss_pred hhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc---eeeEEEec
Confidence 99999999999999999866554333 3344566899999999999864 57899999988 67777777
Q ss_pred CCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 408 GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 408 ~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
-....|..+.|+|.-+ .|+.|+.||.++||=
T Consensus 455 i~~aSvv~~~WhpkLN-------------Qi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 455 ISTASVVRCLWHPKLN-------------QIFAGSGDGTAHVYY 485 (641)
T ss_pred CCCceEEEEeecchhh-------------heeeecCCCceEEEE
Confidence 7788899999999987 688888899999864
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-30 Score=237.40 Aligned_cols=278 Identities=27% Similarity=0.467 Sum_probs=232.6
Q ss_pred ccceeeeeeecccEEEEEec-CCEEEEeeCCCcEEEeeCC-cc---ccccccCcccEEE-EEEeC-CCCEEEEEeCCCeE
Q 012007 113 NGLIGSIVRKEGHIYSLAAS-GDLLYTGSDSKNIRVWKNL-KE---FSGFKSNSGLVKA-IIISG-DSNKIFTGHQDGKI 185 (473)
Q Consensus 113 ~~~~~~l~~h~~~V~~~~~~-g~~l~tg~~dg~i~vwd~~-~~---~~~~~~h~~~V~~-l~~s~-~~~~l~s~~~dg~i 185 (473)
.++..++.+|...|..+... +..+++++.||++++|+-. +. ...+.+|.+.|.+ +++-+ ++-.|++|+.|+.|
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred ceeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 45677899999999888765 6679999999999999853 22 3457778888877 88875 44469999999999
Q ss_pred EEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 012007 186 RIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS 265 (473)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~ 265 (473)
.+|........... .+|...|.|+....++. +++|++|.++++|..
T Consensus 84 ~v~~~~~~~P~~~L--------------------------------kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~- 129 (745)
T KOG0301|consen 84 IVFKLSQAEPLYTL--------------------------------KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI- 129 (745)
T ss_pred EEEecCCCCchhhh--------------------------------hccccceeeeecCCcCc-eEecccccceEEecc-
Confidence 99999877643322 36999999999888877 999999999999974
Q ss_pred CCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC
Q 012007 266 DCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD 345 (473)
Q Consensus 266 ~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d 345 (473)
+++...+++|...|+++...|++.+++|+.|.+|++|.- ......+.+|...|..+++-+++. +++++.|
T Consensus 130 -~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--------~~~l~tf~gHtD~VRgL~vl~~~~-flScsND 199 (745)
T KOG0301|consen 130 -GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--------GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSND 199 (745)
T ss_pred -hhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccC--------CchhhhhccchhheeeeEEecCCC-eEeecCC
Confidence 566777999999999999999999999999999999964 335678899999999999998765 5689999
Q ss_pred CcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 346 GLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
|.|++|++... ....+.+|...+.+++ .++..++++++|++++||+.. .+.+.+.-....|+++.+-+++.
T Consensus 200 g~Ir~w~~~ge--~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-----e~~q~I~lPttsiWsa~~L~NgD 272 (745)
T KOG0301|consen 200 GSIRLWDLDGE--VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-----ECVQVITLPTTSIWSAKVLLNGD 272 (745)
T ss_pred ceEEEEeccCc--eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-----ceEEEEecCccceEEEEEeeCCC
Confidence 99999999543 3347789999998887 468899999999999999876 56666665566899999999987
Q ss_pred CCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 424 HDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 424 ~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
+++|+.||.||||.....
T Consensus 273 --------------Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 273 --------------IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred --------------EEEeccCceEEEEEeccc
Confidence 899999999999998743
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=245.48 Aligned_cols=243 Identities=21% Similarity=0.376 Sum_probs=191.3
Q ss_pred eeeee-eecccEEEEEe--cCCEEEEeeCCCcEEEeeCCc----------------------------------------
Q 012007 116 IGSIV-RKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK---------------------------------------- 152 (473)
Q Consensus 116 ~~~l~-~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~---------------------------------------- 152 (473)
.+.+. .|.|.|+++.| ||+|||+||.||.|+||.+.+
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 44566 89999999876 599999999999999995422
Q ss_pred ----------------------cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecccccccee
Q 012007 153 ----------------------EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDY 210 (473)
Q Consensus 153 ----------------------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 210 (473)
++..+++|.+.|..|.|+.++ +|++++.|.+||+|++...++...+.
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~---------- 407 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS---------- 407 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe----------
Confidence 123378999999999999776 99999999999999999887766554
Q ss_pred EeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC
Q 012007 211 VKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS 289 (473)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~ 289 (473)
|.+.|+|++|+| |.++|++|+-||.|+||++...+.+.-... .+.|+++++.|+|
T Consensus 408 -----------------------HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdG 463 (712)
T KOG0283|consen 408 -----------------------HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDG 463 (712)
T ss_pred -----------------------cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCC
Confidence 999999999999 889999999999999999988776655444 4789999999999
Q ss_pred -EEEEEeCCCcEEEEeCcccCCCcceeeee---eeccCCccEEEEEEccCC-CEEEEeCCCCcEEEEecCCcccccceee
Q 012007 290 -LVFTGSADGTVKVWRRELQGKGTKHCLAQ---VLLKHENAVTALAVNQES-AVVYCGSSDGLVNFWECEKHLSHGGVLR 364 (473)
Q Consensus 290 -~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 364 (473)
..+.|+.+|.+++|+.+.........+.. .-..|. .|+.+.|.|.. ..|++.+.|..|+|||.+... +...++
T Consensus 464 k~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~-lv~KfK 541 (712)
T KOG0283|consen 464 KGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD-LVHKFK 541 (712)
T ss_pred ceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchh-hhhhhc
Confidence 88899999999999986322111100000 011233 79999999844 467788999999999997533 223444
Q ss_pred cCc----ceEEEEEecCCEEEEEeCCCcEEEEecC
Q 012007 365 GHK----MAVLCLAAAGNLVFSGSADRNICLWRRE 395 (473)
Q Consensus 365 ~~~----~~v~~~~~~~~~l~s~~~dg~i~iwd~~ 395 (473)
|+. ..-..|+.||++|+++++|..|++|+..
T Consensus 542 G~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 542 GFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred ccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 332 3335677799999999999999999974
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-29 Score=227.95 Aligned_cols=249 Identities=28% Similarity=0.460 Sum_probs=208.6
Q ss_pred ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee
Q 012007 154 FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233 (473)
Q Consensus 154 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (473)
+..+++|.+.|.+++|+|++++|++++.||.|++|++.+.+...... .
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~--------------------------------~ 49 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK--------------------------------G 49 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe--------------------------------c
Confidence 34677899999999999999999999999999999998765322221 3
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~ 312 (473)
|...+..+.|.+++++|++++.||.|++||+.+++.+..+..|...+.++.+.+++ ++++++.||.|.+||++..
T Consensus 50 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---- 125 (289)
T cd00200 50 HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG---- 125 (289)
T ss_pred CCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc----
Confidence 77888999999999999999999999999999988888999999999999999986 6666666999999999632
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEE
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNIC 390 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~ 390 (473)
.....+..|...+.+++|+|++.++++++.|+.|++||++.... ...+..|...+.++.+ +++.+++++.|+.|+
T Consensus 126 --~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 202 (289)
T cd00200 126 --KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC-VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIK 202 (289)
T ss_pred --EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc-ceeEecCccccceEEECCCcCEEEEecCCCcEE
Confidence 23344557888999999999999999998899999999986543 3455577767766654 566899999999999
Q ss_pred EEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 391 LWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 391 iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
+||+.. ...+..+..|...|.+++|++++. ++++++.||.|++|++..+..
T Consensus 203 i~d~~~---~~~~~~~~~~~~~i~~~~~~~~~~-------------~~~~~~~~~~i~i~~~~~~~~ 253 (289)
T cd00200 203 LWDLST---GKCLGTLRGHENGVNSVAFSPDGY-------------LLASGSEDGTIRVWDLRTGEC 253 (289)
T ss_pred EEECCC---CceecchhhcCCceEEEEEcCCCc-------------EEEEEcCCCcEEEEEcCCcee
Confidence 999987 466777778899999999999976 788888899999999986544
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=213.70 Aligned_cols=235 Identities=22% Similarity=0.264 Sum_probs=201.0
Q ss_pred cccEEEEEec---CCEEEEeeCCCcEEEeeCC---ccccccccCcccEEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCe
Q 012007 123 EGHIYSLAAS---GDLLYTGSDSKNIRVWKNL---KEFSGFKSNSGLVKAIIISGD-SNKIFTGHQDGKIRIWKVSRKNA 195 (473)
Q Consensus 123 ~~~V~~~~~~---g~~l~tg~~dg~i~vwd~~---~~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~vwd~~~~~~ 195 (473)
++.+..++++ .+.+++++.||.++|||+. +++..++.|...|.++.|++- +..+++++.|++|++|+...++.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS 139 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence 4667777776 5689999999999999965 678899999999999999885 45678889999999999987765
Q ss_pred eeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEee
Q 012007 196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESIN 274 (473)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 274 (473)
+..+. +|...|...+|+| ..+++++++.|+++++||++.......+.
T Consensus 140 v~Tf~--------------------------------gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ 187 (311)
T KOG0277|consen 140 VQTFN--------------------------------GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE 187 (311)
T ss_pred eEeec--------------------------------CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE
Confidence 55433 5999999999999 68899999999999999998654444499
Q ss_pred cCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC-CCEEEEeCCCCcEEEE
Q 012007 275 AHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE-SAVVYCGSSDGLVNFW 351 (473)
Q Consensus 275 ~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i~iw 351 (473)
.|...+.|+.|+.-+ .+++|+.|+.|++||++ .-..++..+.+|.-+|..++|+|. ..+|++++.|-+++||
T Consensus 188 ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir-----~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw 262 (311)
T KOG0277|consen 188 AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIR-----NLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIW 262 (311)
T ss_pred eccceeEeecccccCCcEEEecCCCceEEEEehh-----hccccceeecCCceEEEEEecCcchhhHhhhccccceEEec
Confidence 999999999998654 89999999999999998 444567788999999999999995 4789999999999999
Q ss_pred ecCCcccccceeecCcceEEEEEe---cCCEEEEEeCCCcEEEEec
Q 012007 352 ECEKHLSHGGVLRGHKMAVLCLAA---AGNLVFSGSADRNICLWRR 394 (473)
Q Consensus 352 d~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~iwd~ 394 (473)
|...+.........|..-+..+.+ ++.++|+++.|+.++||+.
T Consensus 263 ~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 263 DPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 998777777777788888877765 4889999999999999974
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=208.64 Aligned_cols=281 Identities=22% Similarity=0.327 Sum_probs=222.8
Q ss_pred ecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeC--CCeEEEEeCCCCCe
Q 012007 122 KEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQ--DGKIRIWKVSRKNA 195 (473)
Q Consensus 122 h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~--dg~i~vwd~~~~~~ 195 (473)
..+.|.++.++ |.+|++++.|.+++|||.. +.++.+..+.-.|..++|....+.++.++. |.+||.-++.+.+.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 46677788775 9999999999999999966 556677777778999999877777777776 88999999998887
Q ss_pred eeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec
Q 012007 196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA 275 (473)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 275 (473)
+..+. ||...|..|+.+|-+..+++++.|++|++||++..++...+..
T Consensus 93 lRYF~--------------------------------GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~ 140 (311)
T KOG1446|consen 93 LRYFP--------------------------------GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL 140 (311)
T ss_pred EEEcC--------------------------------CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec
Confidence 66554 6999999999999999999999999999999998888777764
Q ss_pred CCCceeEEEEcCCCEE-EEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC
Q 012007 276 HDDAINSVVAGFDSLV-FTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 276 ~~~~v~~l~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 354 (473)
... ..+++.|+|++ +++.....|++||++..+++...... ...+.....+.|.|+|+|++++.++..+.+++.|.-
T Consensus 141 ~~~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~-i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf 217 (311)
T KOG1446|consen 141 SGR--PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFS-ITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAF 217 (311)
T ss_pred CCC--cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEc-cCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEcc
Confidence 443 34688999954 45555559999999976654433322 222556788999999999999999999999999987
Q ss_pred CcccccceeecCcc-----eEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecC-CCCceeEEEEecCCCCCccc
Q 012007 355 KHLSHGGVLRGHKM-----AVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTG-HTGPVKCLAVEEDRDHDHEY 428 (473)
Q Consensus 355 ~~~~~~~~~~~~~~-----~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~~~~ 428 (473)
++... ..+.++.. .-.++.|+++++++|+.||+|.+|++++ ...+..+.+ +.+++.++.|+|...
T Consensus 218 ~G~~~-~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t---g~~v~~~~~~~~~~~~~~~fnP~~~----- 288 (311)
T KOG1446|consen 218 DGTVK-STFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET---GKKVAVLRGPNGGPVSCVRFNPRYA----- 288 (311)
T ss_pred CCcEe-eeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC---CcEeeEecCCCCCCccccccCCcee-----
Confidence 66533 33333332 2367789999999999999999999988 566777777 789999999999865
Q ss_pred ccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 429 HQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 429 ~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
+++|++ ..+.+|=....+
T Consensus 289 --------mf~sa~--s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 289 --------MFVSAS--SNLVFWLPDEDA 306 (311)
T ss_pred --------eeeecC--ceEEEEeccccc
Confidence 666664 578888766443
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-30 Score=220.47 Aligned_cols=261 Identities=19% Similarity=0.282 Sum_probs=211.6
Q ss_pred CccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceee
Q 012007 151 LKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVL 230 (473)
Q Consensus 151 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (473)
...+..|..|+..|.+++.+|+.++++||+.|..-.+|++.++......
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~el------------------------------- 102 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGEL------------------------------- 102 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEe-------------------------------
Confidence 4456788999999999999999999999999999999999998743322
Q ss_pred EeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccC
Q 012007 231 KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 231 ~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~ 309 (473)
.+|.+.|+|+.|+.+|.+|++|+.+|.|+||+..++.....+...-..+.=+.|+|.+ .|++|+.||.+-+|.+..
T Consensus 103 -tgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~-- 179 (399)
T KOG0296|consen 103 -TGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPS-- 179 (399)
T ss_pred -cCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCC--
Confidence 2599999999999999999999999999999999999888887566677788999987 888999999999999863
Q ss_pred CCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccccee--------------------ecCc--
Q 012007 310 KGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVL--------------------RGHK-- 367 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------------------~~~~-- 367 (473)
....+.+.+|..++++=.|.|+|+.++++..||+|++|++.++....... .+..
T Consensus 180 ----~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~ 255 (399)
T KOG0296|consen 180 ----QALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEG 255 (399)
T ss_pred ----cceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCc
Confidence 24567889999999999999999999999999999999998754332211 0000
Q ss_pred ---------ce-EEEEEe-----------------------cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCcee
Q 012007 368 ---------MA-VLCLAA-----------------------AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVK 414 (473)
Q Consensus 368 ---------~~-v~~~~~-----------------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~ 414 (473)
+. +.|..+ .=.+.|+|+-||+|.|||+.. ..++..-.|..+|+
T Consensus 256 ~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~----~~~R~~c~he~~V~ 331 (399)
T KOG0296|consen 256 VACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAA----STLRHICEHEDGVT 331 (399)
T ss_pred cEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEeccc----chhheeccCCCceE
Confidence 00 011110 114788999999999999987 34555567899999
Q ss_pred EEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCCCCccc
Q 012007 415 CLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGLHSPTQ 467 (473)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~~~~~~ 467 (473)
.+.|.+ .. +|++++.||.|+.||...+........+...
T Consensus 332 ~l~w~~-t~-------------~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~ 370 (399)
T KOG0296|consen 332 KLKWLN-TD-------------YLLTACANGKVRQWDARTGQLKFTYTGHQMG 370 (399)
T ss_pred EEEEcC-cc-------------hheeeccCceEEeeeccccceEEEEecCchh
Confidence 999999 44 7999999999999999999876655444433
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-30 Score=217.26 Aligned_cols=286 Identities=17% Similarity=0.320 Sum_probs=222.7
Q ss_pred eeeeeecccEEE--EEecCCEEEEeeCCCcEEEeeCCc--------------------cccccccCcccEEEEEEeCCCC
Q 012007 117 GSIVRKEGHIYS--LAASGDLLYTGSDSKNIRVWKNLK--------------------EFSGFKSNSGLVKAIIISGDSN 174 (473)
Q Consensus 117 ~~l~~h~~~V~~--~~~~g~~l~tg~~dg~i~vwd~~~--------------------~~~~~~~h~~~V~~l~~s~~~~ 174 (473)
..+..|++.+.+ +++||.++|||+.|-.|+|.|+.+ .++++..|...|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 456678887766 556799999999999999998641 1445677999999999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe
Q 012007 175 KIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS 254 (473)
Q Consensus 175 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s 254 (473)
.|++|+.|++|+++|+........++. +....+|.+|.|+|.|.+|++|.
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~------------------------------~qd~~~vrsiSfHPsGefllvgT 235 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKV------------------------------FQDTEPVRSISFHPSGEFLLVGT 235 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHH------------------------------hhccceeeeEeecCCCceEEEec
Confidence 999999999999999976543322221 12567899999999999999999
Q ss_pred CCCCEEEEEcCCCeeeEEe---ecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCC-ccEEE
Q 012007 255 WDKTLKVWRISDCKCLESI---NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHE-NAVTA 329 (473)
Q Consensus 255 ~dg~v~vwd~~~~~~~~~~---~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~v~~ 329 (473)
...++++||+++.++...- ..|.+.|+++.+++.+ +.++++.||.|++||-- ...+....-..|. ..|.+
T Consensus 236 dHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGV-----S~rCv~t~~~AH~gsevcS 310 (430)
T KOG0640|consen 236 DHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGV-----SNRCVRTIGNAHGGSEVCS 310 (430)
T ss_pred CCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccc-----cHHHHHHHHhhcCCceeee
Confidence 9999999999999887654 3688999999999988 78899999999999964 3444444455565 46899
Q ss_pred EEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCc-ce---E--EEEEecCCEEEEEe-CCCcEEEEecCCCCceeE
Q 012007 330 LAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHK-MA---V--LCLAAAGNLVFSGS-ADRNICLWRREESGAHSC 402 (473)
Q Consensus 330 l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~---v--~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~ 402 (473)
..|..+++++++.+.|..+++|.+.++..+........ +. - ..|.....|++.-. ..+.++-||.++.....+
T Consensus 311 a~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l 390 (430)
T KOG0640|consen 311 AVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL 390 (430)
T ss_pred EEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh
Confidence 99999999999999999999999988765543322211 10 0 11223355555443 356799999998533222
Q ss_pred EEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 403 LAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 403 ~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
.-.+|++.+..+.-+|.+. .|.||+.|..+++|--
T Consensus 391 --~slgHn~a~R~i~HSP~~p-------------~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 391 --LSLGHNGAVRWIVHSPVEP-------------AFMTCSDDFRARFWYR 425 (430)
T ss_pred --cccCCCCCceEEEeCCCCC-------------ceeeecccceeeeeee
Confidence 2348999999999999998 8999999999999964
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-30 Score=249.28 Aligned_cols=295 Identities=20% Similarity=0.275 Sum_probs=225.8
Q ss_pred ccEEEE--EecCCEEEEee--CCCcEEEeeCC--------------ccccccccCcccEEEEEEeCCCCEEEEEeCCCeE
Q 012007 124 GHIYSL--AASGDLLYTGS--DSKNIRVWKNL--------------KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKI 185 (473)
Q Consensus 124 ~~V~~~--~~~g~~l~tg~--~dg~i~vwd~~--------------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i 185 (473)
..|.++ .++|..+|||+ .||.++||+.. +.+.....|.+.|+|+.|++||++||+|+.|+.|
T Consensus 14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v 93 (942)
T KOG0973|consen 14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLV 93 (942)
T ss_pred eeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceE
Confidence 445554 47799999999 89999999532 3355667899999999999999999999999999
Q ss_pred EEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEE-eecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEc
Q 012007 186 RIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEV-RRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264 (473)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~ 264 (473)
.||+...... ....+. ....... .-.....+.+|...|..++|+|++.+|++++.|++|.|||.
T Consensus 94 ~iW~~~~~~~--~~~fgs-------------~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~ 158 (942)
T KOG0973|consen 94 MIWERAEIGS--GTVFGS-------------TGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNA 158 (942)
T ss_pred EEeeecccCC--cccccc-------------cccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcc
Confidence 9999874100 000000 0000000 11122345569999999999999999999999999999999
Q ss_pred CCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeecc------CCccEEEEEEccCCC
Q 012007 265 SDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLK------HENAVTALAVNQESA 337 (473)
Q Consensus 265 ~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~------~~~~v~~l~~~~~~~ 337 (473)
.+.+.+..+++|...|..+.|.|-| +|++-+.|++|+||++.. ....+.+.+ ...-...+.|+|||.
T Consensus 159 ~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d------w~i~k~It~pf~~~~~~T~f~RlSWSPDG~ 232 (942)
T KOG0973|consen 159 KTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD------WGIEKSITKPFEESPLTTFFLRLSWSPDGH 232 (942)
T ss_pred ccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccc------ceeeEeeccchhhCCCcceeeecccCCCcC
Confidence 9999999999999999999999998 899999999999999652 112222222 234578899999999
Q ss_pred EEEEeCC----CCcEEEEecCCcccccceeecCcceEEEEEec---------------CC----EEEEEeCCCcEEEEec
Q 012007 338 VVYCGSS----DGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA---------------GN----LVFSGSADRNICLWRR 394 (473)
Q Consensus 338 ~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~---------------~~----~l~s~~~dg~i~iwd~ 394 (473)
+|++... -.++.|.+-.+ ......+.||..++.++.++ ++ .+|+|+.|++|-||..
T Consensus 233 ~las~nA~n~~~~~~~IieR~t-Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T 311 (942)
T KOG0973|consen 233 HLASPNAVNGGKSTIAIIERGT-WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT 311 (942)
T ss_pred eecchhhccCCcceeEEEecCC-ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec
Confidence 9998643 34688888754 45556788999999888764 11 6889999999999998
Q ss_pred CCCCceeEEEEe-cCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 395 EESGAHSCLAVL-TGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 395 ~~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
... +++... .-....|.+++|+|||- .|+.+|.||+|.+..+++.+
T Consensus 312 ~~~---RPl~vi~~lf~~SI~DmsWspdG~-------------~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 312 ALP---RPLFVIHNLFNKSIVDMSWSPDGF-------------SLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCC---CchhhhhhhhcCceeeeeEcCCCC-------------eEEEEecCCeEEEEEcchHH
Confidence 663 333332 22356899999999998 79999999999999998643
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=229.01 Aligned_cols=278 Identities=21% Similarity=0.352 Sum_probs=225.9
Q ss_pred eeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC----ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 117 GSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL----KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 117 ~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~----~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
..+..|.+.|..+.|- ...|++|+.|..|++|++. ....++.+..+.|+.+.|.++++++++++.|+.+++|++
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 3456788888887764 5799999999999999865 245677788899999999999999999999999999999
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL 270 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~ 270 (473)
.......... +|.+.|+++.|......+++|+.|.+|++||+....|.
T Consensus 249 d~~r~~~TLs--------------------------------GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~ 296 (459)
T KOG0288|consen 249 DSLRLRHTLS--------------------------------GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCS 296 (459)
T ss_pred cchhhhhhhc--------------------------------ccccceeeehhhccccceeeccccchhhhhhhhhhhee
Confidence 8876543332 59999999999887777999999999999999998888
Q ss_pred EEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEE
Q 012007 271 ESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350 (473)
Q Consensus 271 ~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~i 350 (473)
.++. ....+..|+.. ...+++|-.|++|++||.+.... ...... .+.|+++..++++..|++++.|.++.+
T Consensus 297 kt~l-~~S~cnDI~~~-~~~~~SgH~DkkvRfwD~Rs~~~------~~sv~~-gg~vtSl~ls~~g~~lLsssRDdtl~v 367 (459)
T KOG0288|consen 297 KTVL-PGSQCNDIVCS-ISDVISGHFDKKVRFWDIRSADK------TRSVPL-GGRVTSLDLSMDGLELLSSSRDDTLKV 367 (459)
T ss_pred cccc-ccccccceEec-ceeeeecccccceEEEeccCCce------eeEeec-CcceeeEeeccCCeEEeeecCCCceee
Confidence 7765 33456666655 44788999999999999874332 233333 348999999999999999999999999
Q ss_pred EecCCccccc-----ceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCC--ceeEEEEecCCC
Q 012007 351 WECEKHLSHG-----GVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTG--PVKCLAVEEDRD 423 (473)
Q Consensus 351 wd~~~~~~~~-----~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~--~V~~l~~~~~~~ 423 (473)
.|+++..... ....+|.-.-.+|+|++.|+++|+.||.|+||++.+ .++...+..... .|++++|+|.|.
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~t---gKlE~~l~~s~s~~aI~s~~W~~sG~ 444 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFT---GKLEKVLSLSTSNAAITSLSWNPSGS 444 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccC---ceEEEEeccCCCCcceEEEEEcCCCc
Confidence 9998743321 233456666788999999999999999999999999 455555554433 599999999998
Q ss_pred CCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 424 HDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 424 ~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
.|++++.++.+.+|.
T Consensus 445 -------------~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 445 -------------GLLSADKQKAVTLWT 459 (459)
T ss_pred -------------hhhcccCCcceEecC
Confidence 799999999999994
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-29 Score=210.17 Aligned_cols=263 Identities=18% Similarity=0.308 Sum_probs=206.2
Q ss_pred EEEeeCCCcEEEeeCC--------------ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEee
Q 012007 136 LYTGSDSKNIRVWKNL--------------KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRV 201 (473)
Q Consensus 136 l~tg~~dg~i~vwd~~--------------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 201 (473)
|++|++...|.-+++. ..+-.+..|.++|++++. ++.++|+|+.|-+|+|||+.........
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~l-- 79 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGIL-- 79 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcce--
Confidence 5666666655555422 123456789999999999 5779999999999999999876543322
Q ss_pred ccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCC--EEEEEeCCCCEEEEEcCCCeeeEEeecCCCc
Q 012007 202 GSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQG--LLYSGSWDKTLKVWRISDCKCLESINAHDDA 279 (473)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~--~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~ 279 (473)
..|.+.|+++.|.+.-. .|++|+.||.|.+|+....+++..+++|.+.
T Consensus 80 ------------------------------l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~ 129 (362)
T KOG0294|consen 80 ------------------------------LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ 129 (362)
T ss_pred ------------------------------eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc
Confidence 24999999999998654 8999999999999999999999999999999
Q ss_pred eeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccc
Q 012007 280 INSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLS 358 (473)
Q Consensus 280 v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 358 (473)
|+.++++|.+ +-++.+.|+.+++||+-.+.... ...-....+.+.|+|.|.+++.+..+ .|-+|.++....
T Consensus 130 Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~-------v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v 201 (362)
T KOG0294|consen 130 VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF-------VLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASV 201 (362)
T ss_pred cceeEecCCCceEEEEcCCceeeeehhhcCccce-------eeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhH
Confidence 9999999999 56688999999999986443211 11112233449999999988888765 589998876444
Q ss_pred ccceeecCcceEEEEEec-CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEE
Q 012007 359 HGGVLRGHKMAVLCLAAA-GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWT 437 (473)
Q Consensus 359 ~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~ 437 (473)
..... ....+.|+.+. +..|++|+.|+.|.+||.++ ..++..+.+|...|.++.+-.+..+ .+
T Consensus 202 ~~~i~--~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds---~~~~~~~~AH~~RVK~i~~~~~~~~-----------~~ 265 (362)
T KOG0294|consen 202 FREIE--NPKRILCATFLDGSELLVGGDNEWISLKDTDS---DTPLTEFLAHENRVKDIASYTNPEH-----------EY 265 (362)
T ss_pred hhhhh--ccccceeeeecCCceEEEecCCceEEEeccCC---CccceeeecchhheeeeEEEecCCc-----------eE
Confidence 33222 22456777764 88999999999999999987 6788899999999999996554321 18
Q ss_pred EEEeeCCCcEEEEEcCCCC
Q 012007 438 VYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 438 l~s~s~Dg~v~iW~i~~~~ 456 (473)
|+|+|.||.|+|||+....
T Consensus 266 lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 266 LVTASSDGFIKVWDIDMET 284 (362)
T ss_pred EEEeccCceEEEEEccccc
Confidence 9999999999999998763
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=212.48 Aligned_cols=247 Identities=22% Similarity=0.360 Sum_probs=210.0
Q ss_pred cccceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEE
Q 012007 112 CNGLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187 (473)
Q Consensus 112 ~~~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~v 187 (473)
.+..++++.+|.|.|++-..+ ....|+++.|-+-+|||.. ..+..|. |..-|.+++|+.|.++|++|+.++.+||
T Consensus 48 tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrv 126 (334)
T KOG0278|consen 48 TGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRV 126 (334)
T ss_pred CCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhh
Confidence 356899999999999998876 4478899999999999954 4555554 8889999999999999999999999999
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~ 267 (473)
+|++..+......- +|.+.|..+.|....+.+++.+.|++|++||.+++
T Consensus 127 fdln~p~App~E~~-------------------------------ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTg 175 (334)
T KOG0278|consen 127 FDLNRPKAPPKEIS-------------------------------GHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTG 175 (334)
T ss_pred hhccCCCCCchhhc-------------------------------CCCCcceeEEEeccCceEEeeccCCceEEEEeccC
Confidence 99987664332221 49999999999998889999999999999999999
Q ss_pred eeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCc
Q 012007 268 KCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGL 347 (473)
Q Consensus 268 ~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~ 347 (473)
..++++. ....|+++.+++++.+++....+.|.+||....+. .....-...|.+..++|+..++++|+.|..
T Consensus 176 t~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~-------lKs~k~P~nV~SASL~P~k~~fVaGged~~ 247 (334)
T KOG0278|consen 176 TEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGL-------LKSYKMPCNVESASLHPKKEFFVAGGEDFK 247 (334)
T ss_pred cEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccc-------eeeccCccccccccccCCCceEEecCcceE
Confidence 9999997 45689999999999999999999999999864321 112233567899999999999999999999
Q ss_pred EEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCC
Q 012007 348 VNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESG 398 (473)
Q Consensus 348 i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~ 398 (473)
++.||..++.......++|.++|.|+. |+|...++|+.||+|+||.+..++
T Consensus 248 ~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 248 VYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 999999998887666789999998765 679999999999999999987643
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=220.88 Aligned_cols=275 Identities=21% Similarity=0.322 Sum_probs=225.2
Q ss_pred cccEEEEEecC----CEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCee
Q 012007 123 EGHIYSLAASG----DLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNAS 196 (473)
Q Consensus 123 ~~~V~~~~~~g----~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 196 (473)
...|.+++++. ++.+|++. .+.||+.. ...+.+.-....|.++.|..||++|+.|+..|.|+|+|+.+....
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~--rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSV--RVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEeccc--EEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 45677777774 46666654 78999854 334455556788999999999999999999999999996653322
Q ss_pred eEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEeec
Q 012007 197 VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINA 275 (473)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 275 (473)
.... .|..+|..+.|+| ++..|++|+.|+.+++||+.+......+.+
T Consensus 104 R~~~--------------------------------ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~ 151 (487)
T KOG0310|consen 104 RQLY--------------------------------AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSG 151 (487)
T ss_pred HHHh--------------------------------hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecC
Confidence 2221 4999999999999 566788899999999999999888778999
Q ss_pred CCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEec
Q 012007 276 HDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWEC 353 (473)
Q Consensus 276 ~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~ 353 (473)
|.+.|.|.+++|.. .+++|+.||.|++||++... .......|..+|..+.+-|.|..+++++. ..|++||+
T Consensus 152 htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~------~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl 224 (487)
T KOG0310|consen 152 HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT------SRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDL 224 (487)
T ss_pred CcceeEeeccccCCCeEEEecCCCceEEEEEeccCC------ceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEe
Confidence 99999999999875 89999999999999998432 23455679999999999999999988764 57999999
Q ss_pred CCcccccceeecCcceEEEEEec--CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccC
Q 012007 354 EKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQK 431 (473)
Q Consensus 354 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~ 431 (473)
-++.+.......|...|+|+... +..|++|+-|+.|++||+.+ .+.+..+. ..++|.+++.+|+++
T Consensus 225 ~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~---~Kvv~s~~-~~~pvLsiavs~dd~-------- 292 (487)
T KOG0310|consen 225 TTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN---YKVVHSWK-YPGPVLSIAVSPDDQ-------- 292 (487)
T ss_pred cCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccc---eEEEEeee-cccceeeEEecCCCc--------
Confidence 97777766666799999998764 69999999999999999877 67777765 478999999999988
Q ss_pred CCccEEEEEeeCCCcEEEEEcCCC
Q 012007 432 GDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 432 ~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
.++.|-.||.+.+-+....
T Consensus 293 -----t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 293 -----TVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred -----eEEEecccceeeeehhhcc
Confidence 7999999999888755443
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-28 Score=235.66 Aligned_cols=234 Identities=19% Similarity=0.268 Sum_probs=178.1
Q ss_pred ccccCcccEEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeec
Q 012007 156 GFKSNSGLVKAIIISG-DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRH 234 (473)
Q Consensus 156 ~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
.+.+|.+.|.+++|+| ++++|++|+.||+|++||+......... ......+.+|
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~-------------------------~~~l~~L~gH 124 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNI-------------------------SDPIVHLQGH 124 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccccc-------------------------CcceEEecCC
Confidence 4778999999999999 8889999999999999999765321000 0001123359
Q ss_pred cCCeeEEEEcCCC-CEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCc
Q 012007 235 YDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 235 ~~~v~~l~~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~ 312 (473)
...|.+++|+|++ ++|++|+.|++|+|||+++++.+..+..|...|.+++|++++ +|++++.|+.|++||++.+.
T Consensus 125 ~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~--- 201 (493)
T PTZ00421 125 TKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT--- 201 (493)
T ss_pred CCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc---
Confidence 9999999999975 699999999999999999999999999999999999999998 89999999999999997432
Q ss_pred ceeeeeeeccCCcc-EEEEEEccCCCEEEEeC----CCCcEEEEecCCcccccceeecCc-ceE--EEEEecCCEEEEEe
Q 012007 313 KHCLAQVLLKHENA-VTALAVNQESAVVYCGS----SDGLVNFWECEKHLSHGGVLRGHK-MAV--LCLAAAGNLVFSGS 384 (473)
Q Consensus 313 ~~~~~~~~~~~~~~-v~~l~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~-~~v--~~~~~~~~~l~s~~ 384 (473)
....+..|... +..+.|.+++..+++++ .|+.|++||+++..........+. ..+ ..+++++++|++|+
T Consensus 202 ---~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 202 ---IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred ---EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEE
Confidence 24455667654 45678888877776653 478999999987544433332222 222 34566789998887
Q ss_pred -CCCcEEEEecCCCCceeEEEEec-CCCCceeEEEEecCCC
Q 012007 385 -ADRNICLWRREESGAHSCLAVLT-GHTGPVKCLAVEEDRD 423 (473)
Q Consensus 385 -~dg~i~iwd~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~ 423 (473)
.|+.|++||+.++ .++.... .+..++.+++|.|...
T Consensus 279 kgDg~Iriwdl~~~---~~~~~~~~~s~~~~~g~~~~pk~~ 316 (493)
T PTZ00421 279 KGEGNIRCFELMNE---RLTFCSSYSSVEPHKGLCMMPKWS 316 (493)
T ss_pred eCCCeEEEEEeeCC---ceEEEeeccCCCCCcceEeccccc
Confidence 5999999999984 3333332 3556788999999754
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=229.61 Aligned_cols=265 Identities=24% Similarity=0.382 Sum_probs=218.8
Q ss_pred CCEEEEeeCCCcEEEeeCCcc-cc-ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecccccccee
Q 012007 133 GDLLYTGSDSKNIRVWKNLKE-FS-GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDY 210 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~~~-~~-~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 210 (473)
.+.||+|.. ..|++|+.... +. ....+...|+++.|+++|++|++|..+|.|.|||....+.......
T Consensus 188 ~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~--------- 257 (484)
T KOG0305|consen 188 ANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG--------- 257 (484)
T ss_pred CCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC---------
Confidence 557777775 58999986532 22 2233488999999999999999999999999999987765444432
Q ss_pred EeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEE-eecCCCceeEEEEcCCC
Q 012007 211 VKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES-INAHDDAINSVVAGFDS 289 (473)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~-~~~~~~~v~~l~~~~~~ 289 (473)
.|...|.+++|. +..+.+|+.|+.|..+|++..+.+.. +.+|...|..+.|++++
T Consensus 258 ----------------------~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~ 313 (484)
T KOG0305|consen 258 ----------------------SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDG 313 (484)
T ss_pred ----------------------CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCC
Confidence 288999999998 67899999999999999998776655 88999999999999998
Q ss_pred -EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc-CCCEEEEe--CCCCcEEEEecCCcccccceeec
Q 012007 290 -LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ-ESAVVYCG--SSDGLVNFWECEKHLSHGGVLRG 365 (473)
Q Consensus 290 -~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~ 365 (473)
++++|+.|+.+.|||.. ...+...+..|..+|.+++|+| ...+||+| +.|+.|++||..++........+
T Consensus 314 ~~lASGgnDN~~~Iwd~~------~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg 387 (484)
T KOG0305|consen 314 NQLASGGNDNVVFIWDGL------SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG 387 (484)
T ss_pred CeeccCCCccceEeccCC------CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC
Confidence 99999999999999984 3345678889999999999999 56788886 46999999999987776555544
Q ss_pred CcceEEEEEe--cCCEEEE--EeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEe
Q 012007 366 HKMAVLCLAA--AGNLVFS--GSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG 441 (473)
Q Consensus 366 ~~~~v~~~~~--~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~ 441 (473)
. .|+.+.| ..+-|++ |..++.|.||+..+ ...+..+.+|...|..++++||+. .+++|
T Consensus 388 s--QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps---~~~~~~l~gH~~RVl~la~SPdg~-------------~i~t~ 449 (484)
T KOG0305|consen 388 S--QVCSLIWSKKYKELLSTHGYSENQITLWKYPS---MKLVAELLGHTSRVLYLALSPDGE-------------TIVTG 449 (484)
T ss_pred C--ceeeEEEcCCCCEEEEecCCCCCcEEEEeccc---cceeeeecCCcceeEEEEECCCCC-------------EEEEe
Confidence 4 4555555 4443554 34677899999998 788999999999999999999998 89999
Q ss_pred eCCCcEEEEEcCCC
Q 012007 442 SLDKSVKVWRVSEH 455 (473)
Q Consensus 442 s~Dg~v~iW~i~~~ 455 (473)
+.|.++++|++-..
T Consensus 450 a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 450 AADETLRFWNLFDE 463 (484)
T ss_pred cccCcEEeccccCC
Confidence 99999999999875
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-28 Score=218.22 Aligned_cols=276 Identities=18% Similarity=0.302 Sum_probs=224.6
Q ss_pred eeecccEEEEEec--CCEEEEeeCCCcEEEeeCCcc-----ccccc--cCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 120 VRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE-----FSGFK--SNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 120 ~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~~-----~~~~~--~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
..|..-|.++..+ .+.++||+. |.|+|||+... +..+. ...+-|.++.+.|||+.|++|+.-.++.|||+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 4677878887765 668999997 78999997643 22222 23567999999999999999999999999999
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL 270 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~ 270 (473)
..........+.+ ..-.+..++.+||.+..+++..||.|.|||+.+...+
T Consensus 495 AapTprikaelts------------------------------sapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V 544 (705)
T KOG0639|consen 495 AAPTPRIKAELTS------------------------------SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV 544 (705)
T ss_pred cCCCcchhhhcCC------------------------------cchhhhhhhcCCccceeeeeccCCcEEEEEcccceee
Confidence 8765433322211 3346778999999999999999999999999999999
Q ss_pred EEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEE
Q 012007 271 ESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVN 349 (473)
Q Consensus 271 ~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~ 349 (473)
+.|++|.+.+.||.++++| .|.+|+-|.+|+.||++.+.+.. .....+.|.++.+.|++.+|++|..++.+.
T Consensus 545 rqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlq-------qhdF~SQIfSLg~cP~~dWlavGMens~ve 617 (705)
T KOG0639|consen 545 RQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ-------QHDFSSQIFSLGYCPTGDWLAVGMENSNVE 617 (705)
T ss_pred ecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhh-------hhhhhhhheecccCCCccceeeecccCcEE
Confidence 9999999999999999999 89999999999999998543211 122357899999999999999999999999
Q ss_pred EEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcc
Q 012007 350 FWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHE 427 (473)
Q Consensus 350 iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~ 427 (473)
+.......+ ..+.-|...|+++. +.|+++++.+.|+.+..|....+ ..+..... ...|.++.++.|.+
T Consensus 618 vlh~skp~k--yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG---asiFqskE-~SsVlsCDIS~ddk---- 687 (705)
T KOG0639|consen 618 VLHTSKPEK--YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQSKE-SSSVLSCDISFDDK---- 687 (705)
T ss_pred EEecCCccc--eeecccccEEEEEEecccCceeeecCchhhhhhccCccc---cceeeccc-cCcceeeeeccCce----
Confidence 988776444 35666888887765 46999999999999999998773 44444433 57899999999998
Q ss_pred cccCCCccEEEEEeeCCCcEEEEEc
Q 012007 428 YHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 428 ~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
+|+||+.|+...||.+
T Consensus 688 ---------yIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 688 ---------YIVTGSGDKKATVYEV 703 (705)
T ss_pred ---------EEEecCCCcceEEEEE
Confidence 9999999999999876
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-29 Score=220.83 Aligned_cols=273 Identities=22% Similarity=0.366 Sum_probs=221.4
Q ss_pred ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee
Q 012007 154 FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233 (473)
Q Consensus 154 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (473)
+..+..|.-+|.++++++++.++++++.||+|.-|++.++.......... ....... ..... .. .+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~-----ev~k~~~-----~~~k~---~r-~~ 200 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD-----EVLKSHG-----NPLKE---SR-KG 200 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc-----hhhhhcc-----CCCCc---cc-cc
Confidence 56677899999999999999999999999999999999887542221110 0000000 00000 00 25
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~ 312 (473)
|...+.+++.++|+++|++|+.|..|.||+..+.+.++.+.+|.+.|.+++|-... .+++++.|+.|++|+++
T Consensus 201 h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~------ 274 (479)
T KOG0299|consen 201 HVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSID------ 274 (479)
T ss_pred ccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehh------
Confidence 99999999999999999999999999999999999999999999999999997664 89999999999999985
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe-cCCEEEEEeCCCcEEE
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA-AGNLVFSGSADRNICL 391 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~i 391 (473)
....+.++.+|.+.|.+|....-++.+-+|+.|+++++|++... ...++.++...+-|+++ +...+++|+.||.|.+
T Consensus 275 ~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee--sqlifrg~~~sidcv~~In~~HfvsGSdnG~IaL 352 (479)
T KOG0299|consen 275 QLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE--SQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIAL 352 (479)
T ss_pred HhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc--ceeeeeCCCCCeeeEEEecccceeeccCCceEEE
Confidence 44467788999999999999888899989999999999999543 33478889888888886 6889999999999999
Q ss_pred EecCCCCceeEEEEec-CC-----------CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCc
Q 012007 392 WRREESGAHSCLAVLT-GH-----------TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDL 459 (473)
Q Consensus 392 wd~~~~~~~~~~~~~~-~h-----------~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~ 459 (473)
|++... +++.+.. +| ...|++|+..|... ++++|+.+|.|++|.+.++...+
T Consensus 353 Ws~~KK---kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-------------L~asGS~~G~vrLW~i~~g~r~i 416 (479)
T KOG0299|consen 353 WSLLKK---KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-------------LLASGSWSGCVRLWKIEDGLRAI 416 (479)
T ss_pred eeeccc---CceeEeeccccccCCccccccccceeeeEecccCc-------------eEEecCCCCceEEEEecCCcccc
Confidence 999873 3333321 12 23799999999988 99999999999999999997777
Q ss_pred cCCCC
Q 012007 460 KGLHS 464 (473)
Q Consensus 460 ~~~~~ 464 (473)
..+.+
T Consensus 417 ~~l~~ 421 (479)
T KOG0299|consen 417 NLLYS 421 (479)
T ss_pred ceeee
Confidence 66554
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-27 Score=232.16 Aligned_cols=252 Identities=13% Similarity=0.225 Sum_probs=186.2
Q ss_pred eeCCCcEEEeeCCc--cccccccCcccEEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecC
Q 012007 139 GSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIISGD-SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSV 215 (473)
Q Consensus 139 g~~dg~i~vwd~~~--~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (473)
|+.++.|++|+..+ .+..+.+|.+.|.+++|+|+ +++|++|+.||.|+|||+.+.........
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~-------------- 115 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK-------------- 115 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc--------------
Confidence 66789999998653 45678899999999999997 78999999999999999976432100000
Q ss_pred CCcceEEEeecceeeEeeccCCeeEEEEcCCCCE-EEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEE
Q 012007 216 NPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGL-LYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFT 293 (473)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s 293 (473)
.......+|...|.+++|+|++.. |++++.|++|+|||+++++.+..+. |...|.++.|++++ +|++
T Consensus 116 ----------~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat 184 (568)
T PTZ00420 116 ----------DPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSG 184 (568)
T ss_pred ----------cceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEE
Confidence 000122359999999999998875 5789999999999999998887776 56789999999998 7788
Q ss_pred EeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEE-----EEccCCCEEEEeCCCC----cEEEEecCCcccccceee
Q 012007 294 GSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTAL-----AVNQESAVVYCGSSDG----LVNFWECEKHLSHGGVLR 364 (473)
Q Consensus 294 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l-----~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~ 364 (473)
++.|+.|+|||++.+. ....+.+|.+.+... .|++++.+|++++.|+ .|+|||++..........
T Consensus 185 ~s~D~~IrIwD~Rsg~------~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ 258 (568)
T PTZ00420 185 TCVGKHMHIIDPRKQE------IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS 258 (568)
T ss_pred EecCCEEEEEECCCCc------EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE
Confidence 8899999999997432 345567787765332 3458888988877764 799999986433333322
Q ss_pred --cCcceEE-EEEe-cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 365 --GHKMAVL-CLAA-AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 365 --~~~~~v~-~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
.+...++ .+.+ ++.++++|+.|+.|++|++..+ ....+..+. +..++.+++|.|...
T Consensus 259 ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~-~~~~l~~~~-s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 259 IDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG-SIRKVNEYK-SCSPFRSFGFLPKQI 319 (568)
T ss_pred ecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC-cEEeecccc-cCCCccceEEccccc
Confidence 2222221 2223 3889999999999999999873 233344333 567889999999864
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=237.01 Aligned_cols=245 Identities=28% Similarity=0.506 Sum_probs=210.4
Q ss_pred ceee-eeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEe
Q 012007 115 LIGS-IVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 115 ~~~~-l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd 189 (473)
.+.+ +.||.+.|+++.+. +++|++|+.|.+++|||.. .....+.+|.+.|.++...+. ++++|+.|.+|++|+
T Consensus 240 ~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~--~~~sgs~D~tVkVW~ 317 (537)
T KOG0274|consen 240 LILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPF--LLVSGSRDNTVKVWD 317 (537)
T ss_pred EEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCc--eEeeccCCceEEEEe
Confidence 4445 99999999999998 9999999999999999965 667889999999999998654 899999999999999
Q ss_pred CCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee
Q 012007 190 VSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
++++....... +|.++|.++..+ +.++++|+.|++|++||+.++++
T Consensus 318 v~n~~~l~l~~--------------------------------~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~c 363 (537)
T KOG0274|consen 318 VTNGACLNLLR--------------------------------GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKC 363 (537)
T ss_pred ccCcceEEEec--------------------------------cccccEEEEEec--CCEEEEEecCceEEEEEhhhcee
Confidence 99776544433 399999999997 78999999999999999999999
Q ss_pred eEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEE
Q 012007 270 LESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVN 349 (473)
Q Consensus 270 ~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~ 349 (473)
+..+.+|...|.++.+.....+++|+.|+.|++||++.. ......+.+|..-+..+.+ .+++|++++.|+.|+
T Consensus 364 l~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~-----~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik 436 (537)
T KOG0274|consen 364 LKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTK-----RKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIK 436 (537)
T ss_pred eeeecCCcceEEEEEecCcceEEeeeeccceEeecCCch-----hhhhhhhcCCccccccccc--ccceeEeccccccEE
Confidence 999999999999998877689999999999999999732 1456788889888866665 467999999999999
Q ss_pred EEecCCcccccceeec-CcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEe
Q 012007 350 FWECEKHLSHGGVLRG-HKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVL 406 (473)
Q Consensus 350 iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 406 (473)
+||...+... ..+.+ |...+.++......+++++.||.+++||++++ .+...+
T Consensus 437 ~WD~~~~~~~-~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~---~~~~~l 490 (537)
T KOG0274|consen 437 LWDAEEGECL-RTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSG---TLIRTL 490 (537)
T ss_pred EeecccCcee-eeeccCCcccEEEeecCcceEEEEecCCeeEEEecccC---chhhhh
Confidence 9999886555 44555 77888888888888999999999999999984 444444
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=218.64 Aligned_cols=258 Identities=20% Similarity=0.310 Sum_probs=211.5
Q ss_pred cCcccEEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCC
Q 012007 159 SNSGLVKAIIISGDSN-KIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA 237 (473)
Q Consensus 159 ~h~~~V~~l~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (473)
.|.+.|+.+...|+.. .+++.+..+.|.|||...........-. ....+.+.+|.+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~----------------------~~Pdl~L~gH~~e 179 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGE----------------------CRPDLRLKGHEKE 179 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccccc----------------------CCCceEEEeeccc
Confidence 4889999999988764 5666778899999998765432211101 1122445578888
Q ss_pred eeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCe-------eeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcc
Q 012007 238 VSCLSLNA-EQGLLYSGSWDKTLKVWRISDCK-------CLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRREL 307 (473)
Q Consensus 238 v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~-------~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~ 307 (473)
-..|+|++ ....|++|+.|++|++||+.... +...+.+|...|..++|++-. ++.+++.|+.+.|||+|.
T Consensus 180 g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~ 259 (422)
T KOG0264|consen 180 GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRS 259 (422)
T ss_pred ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCC
Confidence 88899998 45689999999999999996532 345678999999999998865 899999999999999985
Q ss_pred cCCCcceeeeeeeccCCccEEEEEEcc-CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEec---CCEEEEE
Q 012007 308 QGKGTKHCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA---GNLVFSG 383 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~ 383 (473)
. .........+|...|.|++|+| ++..||+|+.|++|.+||+++.......+.+|...|.++.++ ...|+++
T Consensus 260 ~----~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASS 335 (422)
T KOG0264|consen 260 N----TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASS 335 (422)
T ss_pred C----CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEec
Confidence 2 3345567789999999999999 567889999999999999999888888999999999998775 6789999
Q ss_pred eCCCcEEEEecCCC-----------CceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 384 SADRNICLWRREES-----------GAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 384 ~~dg~i~iwd~~~~-----------~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
+.|+.+.|||+..- ++.+++....||...|..+.|+|... |.|+|.+.|+.+.||++
T Consensus 336 g~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~eP------------W~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 336 GTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEP------------WTIASVAEDNILQIWQM 403 (422)
T ss_pred ccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCC------------eEEEEecCCceEEEeec
Confidence 99999999999742 23456788889999999999999987 58999999999999999
Q ss_pred CC
Q 012007 453 SE 454 (473)
Q Consensus 453 ~~ 454 (473)
..
T Consensus 404 s~ 405 (422)
T KOG0264|consen 404 AE 405 (422)
T ss_pred cc
Confidence 74
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-28 Score=202.89 Aligned_cols=254 Identities=19% Similarity=0.318 Sum_probs=197.9
Q ss_pred EEEec-CCEEEEeeCCCcEEEeeCCcc----ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeec
Q 012007 128 SLAAS-GDLLYTGSDSKNIRVWKNLKE----FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 128 ~~~~~-g~~l~tg~~dg~i~vwd~~~~----~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 202 (473)
+|+|. ..++++|+.||+||+|++... -+....|.++|.+++|+.||..+++|+.|+.+++||+.+++......
T Consensus 34 ~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~-- 111 (347)
T KOG0647|consen 34 AFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAA-- 111 (347)
T ss_pred EeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeee--
Confidence 44442 557889999999999987642 24456799999999999999999999999999999999986544333
Q ss_pred cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCC--EEEEEeCCCCEEEEEcCCCeeeEEeecCCCce
Q 012007 203 SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQG--LLYSGSWDKTLKVWRISDCKCLESINAHDDAI 280 (473)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~--~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v 280 (473)
|..+|.++.|-+... .|++|++|++|+.||++...++.++... +.+
T Consensus 112 -------------------------------Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eRv 159 (347)
T KOG0647|consen 112 -------------------------------HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ERV 159 (347)
T ss_pred -------------------------------cccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-cee
Confidence 999999999988655 8999999999999999999998888743 456
Q ss_pred eEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcc-cc
Q 012007 281 NSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHL-SH 359 (473)
Q Consensus 281 ~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~ 359 (473)
.++..- ..+++++..+..|.+|+++.... .........+-.+.|++..++....+.|+-+|.+.|..+..+. ..
T Consensus 160 Ya~Dv~-~pm~vVata~r~i~vynL~n~~t----e~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 160 YAADVL-YPMAVVATAERHIAVYNLENPPT----EFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKD 234 (347)
T ss_pred eehhcc-CceeEEEecCCcEEEEEcCCCcc----hhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccC
Confidence 665542 34788899999999999974321 1111222345568999999988888999999999999887532 22
Q ss_pred cceeecCcc---------eEE--EEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 360 GGVLRGHKM---------AVL--CLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 360 ~~~~~~~~~---------~v~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
...++.|.. .|. +|.|.-..|++++.||++.+||-+. ...+.....|..+|++.+|+.+|.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda---r~kLk~s~~~~qpItcc~fn~~G~ 306 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA---RTKLKTSETHPQPITCCSFNRNGS 306 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh---hhhhhccCcCCCccceeEecCCCC
Confidence 334555542 233 3445567899999999999999877 566777788999999999999998
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=187.60 Aligned_cols=288 Identities=18% Similarity=0.221 Sum_probs=221.0
Q ss_pred cccEEEEE--ecCCEEEEeeCCCcEEEeeC---Cc--------------cccccccCcccEEEEEEeCCCCEEEEEeCCC
Q 012007 123 EGHIYSLA--ASGDLLYTGSDSKNIRVWKN---LK--------------EFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183 (473)
Q Consensus 123 ~~~V~~~~--~~g~~l~tg~~dg~i~vwd~---~~--------------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 183 (473)
...|.+++ |.|.+.|+|+...+.||... .+ ..+.-+.|.+.|.|.+|+|+|.+|++|+.|+
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 44566655 45999999999999999731 11 1234567899999999999999999999999
Q ss_pred eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC----CCEEEEEe-CCCC
Q 012007 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE----QGLLYSGS-WDKT 258 (473)
Q Consensus 184 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~----~~~l~s~s-~dg~ 258 (473)
+|++..+.......... ..-+.-|.+.|..++|..+ +.+|++++ .|..
T Consensus 112 ~ik~l~fn~dt~~~~g~---------------------------dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 112 TIKVLPFNADTCNATGH---------------------------DLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK 164 (350)
T ss_pred eEEEEecccccccccCc---------------------------ceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence 99998776543221110 0111128999999999753 55777765 4667
Q ss_pred EEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeecc---CCccEEEEEEccC
Q 012007 259 LKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLK---HENAVTALAVNQE 335 (473)
Q Consensus 259 v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~~~~v~~l~~~~~ 335 (473)
|++-|...|+..+.+.+|.+-|.++..-.+-++++|+.|.+|++||++..... ..+-..+.. ..+.|.+++..|.
T Consensus 165 iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v--~~l~~~~~~~glessavaav~vdps 242 (350)
T KOG0641|consen 165 IYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCV--NTLDNDFHDGGLESSAVAAVAVDPS 242 (350)
T ss_pred EEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeecccee--eeccCcccCCCcccceeEEEEECCC
Confidence 88889999999999999999999986555569999999999999999843211 111111111 2367999999999
Q ss_pred CCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCc-eeEEEEecCCCCc
Q 012007 336 SAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREESGA-HSCLAVLTGHTGP 412 (473)
Q Consensus 336 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~ 412 (473)
|++|++|..|....+||++.+.. .+.+..|...|.|+.+ ...|+++|+.|..|++-|+...-. .-++.....|...
T Consensus 243 grll~sg~~dssc~lydirg~r~-iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk 321 (350)
T KOG0641|consen 243 GRLLASGHADSSCMLYDIRGGRM-IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDK 321 (350)
T ss_pred cceeeeccCCCceEEEEeeCCce-eeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCc
Confidence 99999999999999999997654 4567789888877655 577999999999999999986322 2345556789999
Q ss_pred eeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 413 VKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 413 V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
+..+.|+|..- -+++.+.|.++.+|.++
T Consensus 322 ~i~~rwh~~d~-------------sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 322 AIQCRWHPQDF-------------SFISSSADKTATLWALN 349 (350)
T ss_pred eEEEEecCccc-------------eeeeccCcceEEEeccC
Confidence 99999999986 69999999999999864
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=200.68 Aligned_cols=290 Identities=17% Similarity=0.285 Sum_probs=223.3
Q ss_pred eeeecccEEEEEec---CCEEEEeeCCCcEEEeeCCccc-----------------cccccCcccEEEEEEeC-CCCEEE
Q 012007 119 IVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLKEF-----------------SGFKSNSGLVKAIIISG-DSNKIF 177 (473)
Q Consensus 119 l~~h~~~V~~~~~~---g~~l~tg~~dg~i~vwd~~~~~-----------------~~~~~h~~~V~~l~~s~-~~~~l~ 177 (473)
...|.|.|.++..+ |+|+++|+.||.|.|||+...- ..-.+|.-.|..+.|-| |.-++.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 34578899998876 8999999999999999965211 11235778999999988 445888
Q ss_pred EEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC---CCCEEEEEe
Q 012007 178 TGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA---EQGLLYSGS 254 (473)
Q Consensus 178 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~s~s 254 (473)
+++.|.+++|||..+.+....+. ..+.|.+-+++| ...++++|.
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~---------------------------------me~~VYshamSp~a~sHcLiA~gt 165 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFK---------------------------------MEGKVYSHAMSPMAMSHCLIAAGT 165 (397)
T ss_pred cccccceEEEeecccceeeEEee---------------------------------cCceeehhhcChhhhcceEEEEec
Confidence 89999999999999887655554 556677777777 356888899
Q ss_pred CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccC---------CCcceeeeeeeccC
Q 012007 255 WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQG---------KGTKHCLAQVLLKH 323 (473)
Q Consensus 255 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~---------~~~~~~~~~~~~~~ 323 (473)
.|-.|++.|+.+|.+-+.+.+|.+.|.++.|+|.. .|++|+.||.|++||++... ........+.-..|
T Consensus 166 r~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah 245 (397)
T KOG4283|consen 166 RDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAH 245 (397)
T ss_pred CCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccc
Confidence 99999999999999999999999999999999987 78899999999999997431 11122223345678
Q ss_pred CccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceee--cCcc----eEEEEEecCCEEEEEeCCCcEEEEecCCC
Q 012007 324 ENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLR--GHKM----AVLCLAAAGNLVFSGSADRNICLWRREES 397 (473)
Q Consensus 324 ~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~----~v~~~~~~~~~l~s~~~dg~i~iwd~~~~ 397 (473)
.+.|..++|..++.++++++.|..+++|+..++......+. .|.. .+..-+-+...++---.++.+.++++-.
T Consensus 246 ~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~s- 324 (397)
T KOG4283|consen 246 YGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLE- 324 (397)
T ss_pred cceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccC-
Confidence 89999999999999999999999999999876543221111 1111 1110022333344444568899999888
Q ss_pred CceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 398 GAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 398 ~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
...+..+..|-..|.|.++.|+-+ ...+|..|+.|..|-.....|
T Consensus 325 --gs~ir~l~~h~k~i~c~~~~~~fq-------------~~~tg~~d~ni~~w~p~l~~p 369 (397)
T KOG4283|consen 325 --GSFVRRLSTHLKRINCAAYRPDFE-------------QCFTGDMNGNIYMWSPALKSP 369 (397)
T ss_pred --ceEEEeeecccceeeEEeecCchh-------------hhhccccCCccccccccccCC
Confidence 678888999988999999999987 689999999999998844433
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-28 Score=211.77 Aligned_cols=263 Identities=17% Similarity=0.222 Sum_probs=210.8
Q ss_pred ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeE
Q 012007 152 KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231 (473)
Q Consensus 152 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (473)
+..+.+..|+..|.-+.|+++|+|||+++.|.+..+|++......... ...
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~-----------------------------~tl 265 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLK-----------------------------KTL 265 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeee-----------------------------eee
Confidence 445678889999999999999999999999999999998765431111 223
Q ss_pred eeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee-cCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccC
Q 012007 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN-AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~ 309 (473)
.+|..+|..+.|+||.++|++++.|..+.+||+.+|.+...++ ++...+.+++|.||+ .+++|+.|+.|..||++...
T Consensus 266 vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~ 345 (519)
T KOG0293|consen 266 VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI 345 (519)
T ss_pred ecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch
Confidence 4699999999999999999999999999999999999988775 346889999999999 89999999999999987322
Q ss_pred CCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcE
Q 012007 310 KGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNI 389 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i 389 (473)
. ..........|.++++.+||+++++.+.|..|++|+.++..........+.....+++-+++++++.-.+..|
T Consensus 346 ~------~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei 419 (519)
T KOG0293|consen 346 L------GNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEI 419 (519)
T ss_pred h------hcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCee
Confidence 1 1111112256899999999999999999999999999875554444445566667777889999999999999
Q ss_pred EEEecCCCCceeEEEEecCCCCc--eeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCCCC
Q 012007 390 CLWRREESGAHSCLAVLTGHTGP--VKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGLHS 464 (473)
Q Consensus 390 ~iwd~~~~~~~~~~~~~~~h~~~--V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~~~ 464 (473)
++||+.. ...+..+.||... |-.-+|...... ++++||+|+.|+||+...+++....-.+
T Consensus 420 ~LWDl~e---~~lv~kY~Ghkq~~fiIrSCFgg~~~~------------fiaSGSED~kvyIWhr~sgkll~~LsGH 481 (519)
T KOG0293|consen 420 HLWDLEE---NKLVRKYFGHKQGHFIIRSCFGGGNDK------------FIASGSEDSKVYIWHRISGKLLAVLSGH 481 (519)
T ss_pred EEeecch---hhHHHHhhcccccceEEEeccCCCCcc------------eEEecCCCceEEEEEccCCceeEeecCC
Confidence 9999996 6788888898663 333445443322 8999999999999999998876554443
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=226.04 Aligned_cols=271 Identities=23% Similarity=0.455 Sum_probs=218.5
Q ss_pred cCCEEEEeeCCCcEEEeeCCc--------cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecc
Q 012007 132 SGDLLYTGSDSKNIRVWKNLK--------EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGS 203 (473)
Q Consensus 132 ~g~~l~tg~~dg~i~vwd~~~--------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 203 (473)
.+++|+|||.||.|++|+... .+..++.|...|+.++...+++.|++++.|-+|++|+...........+.
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir- 114 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR- 114 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh-
Confidence 477899999999999997541 35678889999999999999999999999999999999876411111111
Q ss_pred ccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEE-cCCCCEEEEEeCCCCEEEEEcCCCe--eeE--------E
Q 012007 204 LPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL-NAEQGLLYSGSWDKTLKVWRISDCK--CLE--------S 272 (473)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~~~l~s~s~dg~v~vwd~~~~~--~~~--------~ 272 (473)
.|.+.|.|+++ .++..++++|+-|+.|.+||++++. .+. .
T Consensus 115 -----------------------------~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~s 165 (735)
T KOG0308|consen 115 -----------------------------THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNS 165 (735)
T ss_pred -----------------------------cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccccc
Confidence 29999999999 7788999999999999999999772 222 2
Q ss_pred ee-cCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEE
Q 012007 273 IN-AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350 (473)
Q Consensus 273 ~~-~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~i 350 (473)
+. ++...|.+++..+.+ .+++|+..+.|++||.++..+ ...+.+|...|.++..++||..++++++||+|++
T Consensus 166 l~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k------imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrl 239 (735)
T KOG0308|consen 166 LGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK------IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRL 239 (735)
T ss_pred CCCCCccceeeeecCCcceEEEecCcccceEEeccccccc------eeeeeccccceEEEEEcCCCCeEeecCCCceEEe
Confidence 33 788899999999888 788999999999999985432 4556799999999999999999999999999999
Q ss_pred EecCCcccccceeecCcceEEEEEec--CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCccc
Q 012007 351 WECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEY 428 (473)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~ 428 (473)
||+...... ..+..|...+.++..+ =..+++|+.||.|..=|+++......+. ....+|..+..+...+
T Consensus 240 WdLgqQrCl-~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlic---k~daPv~~l~~~~~~~----- 310 (735)
T KOG0308|consen 240 WDLGQQRCL-ATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLIC---KEDAPVLKLHLHEHDN----- 310 (735)
T ss_pred eecccccee-eeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEee---cCCCchhhhhhccccC-----
Confidence 999975544 5577888888877654 5689999999999999999842222222 2345788888876655
Q ss_pred ccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 429 HQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 429 ~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
-+-.++.|+.|+-|.....
T Consensus 311 --------~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 311 --------SVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred --------CceeeeccccceecCCccc
Confidence 3577788999999987643
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=208.94 Aligned_cols=252 Identities=18% Similarity=0.276 Sum_probs=207.0
Q ss_pred cCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCe
Q 012007 159 SNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAV 238 (473)
Q Consensus 159 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 238 (473)
+....+.|..|+|||+||++|+.||.|.||+..+++........... .+.-+.++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd------------------------~fMMmd~aV 266 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD------------------------NFMMMDDAV 266 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhc------------------------ceeecccce
Confidence 34567899999999999999999999999999998765443322111 111288999
Q ss_pred eEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee-cCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceee
Q 012007 239 SCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN-AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCL 316 (473)
Q Consensus 239 ~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~ 316 (473)
.|+.|+.|...|++|+.||.|++|.+++|.|++.+. +|...|+|+.|+.++ .+++++.|.++++.-+..+ ..
T Consensus 267 lci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG------K~ 340 (508)
T KOG0275|consen 267 LCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG------KC 340 (508)
T ss_pred EEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc------hh
Confidence 999999999999999999999999999999999997 899999999999998 8999999999999988633 34
Q ss_pred eeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceee-cCcceEEEEE---ecCCEEEEEeCCCcEEEE
Q 012007 317 AQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLR-GHKMAVLCLA---AAGNLVFSGSADRNICLW 392 (473)
Q Consensus 317 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~---~~~~~l~s~~~dg~i~iw 392 (473)
...+.+|.+.|+...|.++|..+++++.||+|++|+..+......... +...+|..+- -+...+++|...++|.|-
T Consensus 341 LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~im 420 (508)
T KOG0275|consen 341 LKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIM 420 (508)
T ss_pred HHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEE
Confidence 678899999999999999999999999999999999987655433222 2334454443 357789999999999999
Q ss_pred ecCCCCceeEEEEecC---CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 393 RREESGAHSCLAVLTG---HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 393 d~~~~~~~~~~~~~~~---h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
++.. +.+..+.. ..+...+.+.+|.+. ++++.+.|+.++.+.+.++..
T Consensus 421 n~qG----QvVrsfsSGkREgGdFi~~~lSpkGe-------------wiYcigED~vlYCF~~~sG~L 471 (508)
T KOG0275|consen 421 NMQG----QVVRSFSSGKREGGDFINAILSPKGE-------------WIYCIGEDGVLYCFSVLSGKL 471 (508)
T ss_pred eccc----eEEeeeccCCccCCceEEEEecCCCc-------------EEEEEccCcEEEEEEeecCce
Confidence 9886 45555542 345567788899998 899999999999999988754
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=195.57 Aligned_cols=251 Identities=20% Similarity=0.320 Sum_probs=207.3
Q ss_pred cccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeec
Q 012007 155 SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRH 234 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
..+++|...|.+|+|+.+|.+|++|+.|+++++|+++......... ..+|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~------------------------------~~gh 63 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELV------------------------------YRGH 63 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhc------------------------------ccCC
Confidence 4567899999999999999999999999999999998763322111 1258
Q ss_pred cCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCc
Q 012007 235 YDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 235 ~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~ 312 (473)
.+.|-.++|+| ..++|++++.|.+|++||++.+++...+....+.+. +.|+|++ ++++++.|..|.+.|.+....
T Consensus 64 ~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~~~~-- 140 (313)
T KOG1407|consen 64 TDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDRITFIDARTYKI-- 140 (313)
T ss_pred CcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceE-EEEcCCCCEEEEecCcccEEEEEecccce--
Confidence 98999999998 567999999999999999999999999886666665 4556665 999999999999999874321
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEE
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNIC 390 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~ 390 (473)
.........+..++|+.++.+++.....|+|.|..... .++...+..|.....|+.+ +|++||+|+.|-.+.
T Consensus 141 -----~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps-Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvS 214 (313)
T KOG1407|consen 141 -----VNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPS-LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVS 214 (313)
T ss_pred -----eehhcccceeeeeeecCCCCEEEEecCCceEEEEeccc-cccccccccCCcceEEEEECCCCceEeeccccceee
Confidence 22233455678899998888888888889999999885 5566788899988888764 599999999999999
Q ss_pred EEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 391 LWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 391 iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
+||++. ..|++.+..+.-+|..|.|+.+++ +||+||+|..|-|=+++++....+
T Consensus 215 LWD~~E---LiC~R~isRldwpVRTlSFS~dg~-------------~lASaSEDh~IDIA~vetGd~~~e 268 (313)
T KOG1407|consen 215 LWDVDE---LICERCISRLDWPVRTLSFSHDGR-------------MLASASEDHFIDIAEVETGDRVWE 268 (313)
T ss_pred ccChhH---hhhheeeccccCceEEEEeccCcc-------------eeeccCccceEEeEecccCCeEEE
Confidence 999988 788999999999999999999999 999999999997766666654433
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-26 Score=222.29 Aligned_cols=257 Identities=16% Similarity=0.203 Sum_probs=190.0
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE
Q 012007 161 SGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 240 (473)
-..|+....++++..+++++.+.....|+...+...... ..... .......+.+|.+.|.+
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~--~~~G~-----------------~~~~~~~l~GH~~~V~~ 80 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKH--TDYGK-----------------LASNPPILLGQEGPIID 80 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeec--ccccc-----------------CCCCCceEeCCCCCEEE
Confidence 344566666778777888888888888987654321111 00000 00011234579999999
Q ss_pred EEEcC-CCCEEEEEeCCCCEEEEEcCCC-------eeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCC
Q 012007 241 LSLNA-EQGLLYSGSWDKTLKVWRISDC-------KCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGK 310 (473)
Q Consensus 241 l~~~~-~~~~l~s~s~dg~v~vwd~~~~-------~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~ 310 (473)
++|+| ++++|++|+.|++|++||+.++ +++..+.+|...|.+++|+|++ +|++++.|+.|++||++.+
T Consensus 81 v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg-- 158 (493)
T PTZ00421 81 VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG-- 158 (493)
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC--
Confidence 99999 8899999999999999999765 3567888999999999999974 8999999999999999742
Q ss_pred CcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceE---EEEEecCCEEEEEe---
Q 012007 311 GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAV---LCLAAAGNLVFSGS--- 384 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v---~~~~~~~~~l~s~~--- 384 (473)
.....+..|...|.+++|+|++.+|++++.|+.|++||++++... ..+.+|.... ..+.+++..+++++
T Consensus 159 ----~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v-~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~ 233 (493)
T PTZ00421 159 ----KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIV-SSVEAHASAKSQRCLWAKRKDLIITLGCSK 233 (493)
T ss_pred ----eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEE-EEEecCCCCcceEEEEcCCCCeEEEEecCC
Confidence 234566789999999999999999999999999999999986543 4556676432 34455666776654
Q ss_pred -CCCcEEEEecCCCCceeEEEEecCC-CCceeEEEEecCCCCCcccccCCCccEEEEEee-CCCcEEEEEcCCCCCC
Q 012007 385 -ADRNICLWRREESGAHSCLAVLTGH-TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS-LDKSVKVWRVSEHAPD 458 (473)
Q Consensus 385 -~dg~i~iwd~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s-~Dg~v~iW~i~~~~~~ 458 (473)
.|+.|++||++... .++.....+ ...+....|++++. +|++++ .|+.|++||+.++...
T Consensus 234 s~Dr~VklWDlr~~~--~p~~~~~~d~~~~~~~~~~d~d~~-------------~L~lggkgDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 234 SQQRQIMLWDTRKMA--SPYSTVDLDQSSALFIPFFDEDTN-------------LLYIGSKGEGNIRCFELMNERLT 295 (493)
T ss_pred CCCCeEEEEeCCCCC--CceeEeccCCCCceEEEEEcCCCC-------------EEEEEEeCCCeEEEEEeeCCceE
Confidence 47899999998742 233333333 34566677889887 777777 5999999999987643
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-28 Score=197.14 Aligned_cols=250 Identities=20% Similarity=0.278 Sum_probs=195.7
Q ss_pred eeecccEEEE--EecCCEEEEeeCCCcEEEeeCC-----ccccccccCcccEEEEEEeC--CCCEEEEEeCCCeEEEEeC
Q 012007 120 VRKEGHIYSL--AASGDLLYTGSDSKNIRVWKNL-----KEFSGFKSNSGLVKAIIISG--DSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 120 ~~h~~~V~~~--~~~g~~l~tg~~dg~i~vwd~~-----~~~~~~~~h~~~V~~l~~s~--~~~~l~s~~~dg~i~vwd~ 190 (473)
..|++.|-.. .+.|+.|||++.|++|+|+... +.+.++.+|.++|..++|.. .|.+||+|+.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 3466666654 4569999999999999999754 45678999999999999966 7899999999999999998
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC--CCCEEEEEeCCCCEEEEEcCCC-
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA--EQGLLYSGSWDKTLKVWRISDC- 267 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~s~s~dg~v~vwd~~~~- 267 (473)
+.+.-...... ..|...|++++|.| -|-.|++++.||.|.|.+.++.
T Consensus 88 ~~g~w~k~~e~------------------------------~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g 137 (299)
T KOG1332|consen 88 ENGRWTKAYEH------------------------------AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG 137 (299)
T ss_pred CCCchhhhhhh------------------------------hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC
Confidence 87743222211 13999999999998 4678999999999999998754
Q ss_pred --eeeEEeecCCCceeEEEEcCC---------------CEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEE
Q 012007 268 --KCLESINAHDDAINSVVAGFD---------------SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTAL 330 (473)
Q Consensus 268 --~~~~~~~~~~~~v~~l~~~~~---------------~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l 330 (473)
.......+|.-.|++++|.|. ..|++|+.|..|+||+...+ ...+...+.+|.+.|..+
T Consensus 138 ~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~----~w~~e~~l~~H~dwVRDV 213 (299)
T KOG1332|consen 138 GWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD----SWKLERTLEGHKDWVRDV 213 (299)
T ss_pred CccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc----chhhhhhhhhcchhhhhh
Confidence 223445689999999999875 15999999999999998742 444556689999999999
Q ss_pred EEccCC----CEEEEeCCCCcEEEEecCCccc--ccceeecCcceE--EEEEecCCEEEEEeCCCcEEEEecCCCCceeE
Q 012007 331 AVNQES----AVVYCGSSDGLVNFWECEKHLS--HGGVLRGHKMAV--LCLAAAGNLVFSGSADRNICLWRREESGAHSC 402 (473)
Q Consensus 331 ~~~~~~----~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 402 (473)
+|.|.- .+|++++.||+|.||..+.... ....+......+ .++++.|++|+.++.|+.|.+|.-+..+.+.+
T Consensus 214 AwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~ 293 (299)
T KOG1332|consen 214 AWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEE 293 (299)
T ss_pred hhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEE
Confidence 999953 6899999999999998764322 223333344445 44556799999999999999998776555554
Q ss_pred E
Q 012007 403 L 403 (473)
Q Consensus 403 ~ 403 (473)
+
T Consensus 294 v 294 (299)
T KOG1332|consen 294 V 294 (299)
T ss_pred c
Confidence 4
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-28 Score=224.24 Aligned_cols=259 Identities=24% Similarity=0.360 Sum_probs=207.3
Q ss_pred EEEEe-CCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEc
Q 012007 166 AIIIS-GDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLN 244 (473)
Q Consensus 166 ~l~~s-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 244 (473)
.+..+ |.++||+|||.||.|++|++.......... .......|.+.|+.+...
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~--------------------------~~asme~HsDWVNDiiL~ 82 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP--------------------------YIASMEHHSDWVNDIILC 82 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccc--------------------------hhhhhhhhHhHHhhHHhh
Confidence 34443 456789999999999999987654321111 001112399999999999
Q ss_pred CCCCEEEEEeCCCCEEEEEcCCC--eeeEEeecCCCceeEEEE-cCCC-EEEEEeCCCcEEEEeCcccCCC----cceee
Q 012007 245 AEQGLLYSGSWDKTLKVWRISDC--KCLESINAHDDAINSVVA-GFDS-LVFTGSADGTVKVWRRELQGKG----TKHCL 316 (473)
Q Consensus 245 ~~~~~l~s~s~dg~v~vwd~~~~--~~~~~~~~~~~~v~~l~~-~~~~-~l~s~~~dg~i~vwd~~~~~~~----~~~~~ 316 (473)
.+++.|++++.|-+|++|+...+ -++.++..|.+.|.|+++ .++. ++++|+-|+.|.+||+..+... .....
T Consensus 83 ~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 83 GNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred cCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccc
Confidence 99999999999999999999877 678889999999999998 5554 8999999999999999854220 01111
Q ss_pred eeeec-cCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEE--EecCCEEEEEeCCCcEEEEe
Q 012007 317 AQVLL-KHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCL--AAAGNLVFSGSADRNICLWR 393 (473)
Q Consensus 317 ~~~~~-~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~~~dg~i~iwd 393 (473)
...+. ++...|.+++.++.|..+++|+.++.|++||.++..+.. .+.||...|.++ ..||..+++++.||+|++||
T Consensus 163 ~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kim-kLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWd 241 (735)
T KOG0308|consen 163 VNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIM-KLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWD 241 (735)
T ss_pred cccCCCCCccceeeeecCCcceEEEecCcccceEEecccccccee-eeeccccceEEEEEcCCCCeEeecCCCceEEeee
Confidence 12223 888999999999999999999999999999999876654 556999888766 46799999999999999999
Q ss_pred cCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCCCCccc
Q 012007 394 REESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGLHSPTQ 467 (473)
Q Consensus 394 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~~~~~~ 467 (473)
+.. .+|+.++..|...|.++..+|+-. .+++|+.||.|..=|+.+.......+.+.++
T Consensus 242 Lgq---QrCl~T~~vH~e~VWaL~~~~sf~-------------~vYsG~rd~~i~~Tdl~n~~~~tlick~daP 299 (735)
T KOG0308|consen 242 LGQ---QRCLATYIVHKEGVWALQSSPSFT-------------HVYSGGRDGNIYRTDLRNPAKSTLICKEDAP 299 (735)
T ss_pred ccc---cceeeeEEeccCceEEEeeCCCcc-------------eEEecCCCCcEEecccCCchhheEeecCCCc
Confidence 988 789999999999999999999887 7999999999999999886544444433333
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=212.28 Aligned_cols=241 Identities=20% Similarity=0.350 Sum_probs=192.2
Q ss_pred eeeeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCCc--cccccccCcccEEEEEEeCCC-CEEEEEeCCCeEEEEeC
Q 012007 116 IGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIISGDS-NKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~--~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~vwd~ 190 (473)
+..+......|++++| ||++||+|...|.|+|||... .+..+.+|+.+|..+.|+|++ ..|++|+.|+.+++||+
T Consensus 61 ~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~ 140 (487)
T KOG0310|consen 61 RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL 140 (487)
T ss_pred hhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEc
Confidence 3445566788888776 599999999999999999554 577899999999999999976 56778888999999999
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC-CCEEEEEeCCCCEEEEEcCCC-e
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDC-K 268 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~v~vwd~~~~-~ 268 (473)
.+... ...+ .+|++.|.|.+|+|. +..+++|++||.|++||++.. .
T Consensus 141 s~a~v--~~~l------------------------------~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~ 188 (487)
T KOG0310|consen 141 STAYV--QAEL------------------------------SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS 188 (487)
T ss_pred CCcEE--EEEe------------------------------cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc
Confidence 88763 2111 259999999999994 558999999999999999877 6
Q ss_pred eeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcE
Q 012007 269 CLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLV 348 (473)
Q Consensus 269 ~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i 348 (473)
.+.++. |..+|..+.+-|.|.+++......|++||+..++ ........|...|+|+++..++..|++++-|+.|
T Consensus 189 ~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~-----qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~V 262 (487)
T KOG0310|consen 189 RVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG-----QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHV 262 (487)
T ss_pred eeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc-----eehhhhhcccceEEEEEeecCCceEeecccccce
Confidence 666665 8999999999999755555557899999997433 3444555699999999999999999999999999
Q ss_pred EEEecCCcccccceeecCcceE--EEEEecCCEEEEEeCCCcEEEEecCC
Q 012007 349 NFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 349 ~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
++||+.+.+..... ...++| +++++++..++.|..||.+.+=+...
T Consensus 263 KVfd~t~~Kvv~s~--~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 263 KVFDTTNYKVVHSW--KYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred EEEEccceEEEEee--ecccceeeEEecCCCceEEEecccceeeeehhhc
Confidence 99997664333222 234455 45567889999999999887765443
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=221.83 Aligned_cols=305 Identities=19% Similarity=0.247 Sum_probs=220.4
Q ss_pred EEEec--CCEEEEeeCCCcEEEeeCCcc-----ccccccCcccEEEEEEeCC-----------CCEEEEEeCCCeEEEEe
Q 012007 128 SLAAS--GDLLYTGSDSKNIRVWKNLKE-----FSGFKSNSGLVKAIIISGD-----------SNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 128 ~~~~~--g~~l~tg~~dg~i~vwd~~~~-----~~~~~~h~~~V~~l~~s~~-----------~~~l~s~~~dg~i~vwd 189 (473)
++.|| .+.|..--.|..++|||+... ...+..|...|..+.--|. ...++||+.|++||+|+
T Consensus 329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~ 408 (1080)
T KOG1408|consen 329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWD 408 (1080)
T ss_pred EEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEee
Confidence 45565 567888888999999997632 3345568888888876551 12589999999999999
Q ss_pred CCCCCeeeEEeecccc-ccceeEeecCCCcceEE-----EeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEE
Q 012007 190 VSRKNASVHKRVGSLP-TFKDYVKSSVNPKNYVE-----VRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWR 263 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd 263 (473)
++.........-..+. ....+.... ....++. +......-..+....+.+++.+|+|++|++|..-|+++||+
T Consensus 409 l~~ctnn~vyrRNils~~l~ki~y~d-~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~ 487 (1080)
T KOG1408|consen 409 LAFCTNNQVYRRNILSANLSKIPYED-STQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYD 487 (1080)
T ss_pred cccccccceeecccchhhhhcCcccc-CchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEE
Confidence 9873221111100000 000000000 0000000 00011111223455799999999999999999999999999
Q ss_pred cCCCeeeEEeecCCCceeEEEEcCCC----EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccE------------
Q 012007 264 ISDCKCLESINAHDDAINSVVAGFDS----LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAV------------ 327 (473)
Q Consensus 264 ~~~~~~~~~~~~~~~~v~~l~~~~~~----~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v------------ 327 (473)
+...+.+..+.+|+..|.|+.++... +|++++.|..|+|||+. ....+++.+.+|...|
T Consensus 488 Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~-----rny~l~qtld~HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 488 LQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK-----RNYDLVQTLDGHSSSITSVKFACNGLNR 562 (1080)
T ss_pred ehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc-----cccchhhhhcccccceeEEEEeecCCce
Confidence 99999999999999999999998653 89999999999999986 3334444444444444
Q ss_pred -------------------------------------EEEEEccCCCEEEEeCCCCcEEEEecCCccccccee--ecCcc
Q 012007 328 -------------------------------------TALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVL--RGHKM 368 (473)
Q Consensus 328 -------------------------------------~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~ 368 (473)
..|+..|..+++++++.|..|+|||++.+++..... .+|.+
T Consensus 563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG 642 (1080)
T KOG1408|consen 563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG 642 (1080)
T ss_pred EEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCC
Confidence 445555666688999999999999999876654332 23444
Q ss_pred eEE--EEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCc
Q 012007 369 AVL--CLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKS 446 (473)
Q Consensus 369 ~v~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~ 446 (473)
... .+.|.|.||++.+.|+++.++|..+ .+|+....||...|+.+.|.+|.+ -|++.+.||.
T Consensus 643 ~lIKv~lDPSgiY~atScsdktl~~~Df~s---gEcvA~m~GHsE~VTG~kF~nDCk-------------HlISvsgDgC 706 (1080)
T KOG1408|consen 643 DLIKVILDPSGIYLATSCSDKTLCFVDFVS---GECVAQMTGHSEAVTGVKFLNDCK-------------HLISVSGDGC 706 (1080)
T ss_pred ceEEEEECCCccEEEEeecCCceEEEEecc---chhhhhhcCcchheeeeeecccch-------------hheeecCCce
Confidence 444 4557799999999999999999999 689999999999999999999999 5999999999
Q ss_pred EEEEEcCC
Q 012007 447 VKVWRVSE 454 (473)
Q Consensus 447 v~iW~i~~ 454 (473)
|.||.+..
T Consensus 707 IFvW~lp~ 714 (1080)
T KOG1408|consen 707 IFVWKLPL 714 (1080)
T ss_pred EEEEECch
Confidence 99999974
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=196.72 Aligned_cols=259 Identities=17% Similarity=0.278 Sum_probs=200.5
Q ss_pred eeeeecccEEEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCC--EEEEEeCCCeEEEEeCCCC
Q 012007 118 SIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSN--KIFTGHQDGKIRIWKVSRK 193 (473)
Q Consensus 118 ~l~~h~~~V~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~--~l~s~~~dg~i~vwd~~~~ 193 (473)
.+..|.+.|++++.+|.++|+|+.|-+|+|||+. ..+..+..|.+.|+++.|.++-. .|++|+.||.|.+|+...-
T Consensus 38 ~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 38 AFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW 117 (362)
T ss_pred cccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe
Confidence 4567999999999999999999999999999987 45677888999999999998865 8999999999999999877
Q ss_pred CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEe
Q 012007 194 NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI 273 (473)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 273 (473)
....... .|...|+.++.+|.+++.++.+.|+.++.||+-.|+.-..+
T Consensus 118 ~~~~slK--------------------------------~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~ 165 (362)
T KOG0294|consen 118 ELLKSLK--------------------------------AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL 165 (362)
T ss_pred EEeeeec--------------------------------ccccccceeEecCCCceEEEEcCCceeeeehhhcCccceee
Confidence 5444333 48999999999999999999999999999999998876665
Q ss_pred ecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEe
Q 012007 274 NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWE 352 (473)
Q Consensus 274 ~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd 352 (473)
+... .-..+.|+|.| +++.+. ...|-+|.+..... . .. ......+.++.|. ++..|++|..|+.|.+||
T Consensus 166 ~L~~-~at~v~w~~~Gd~F~v~~-~~~i~i~q~d~A~v-----~-~~-i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D 235 (362)
T KOG0294|consen 166 NLKN-KATLVSWSPQGDHFVVSG-RNKIDIYQLDNASV-----F-RE-IENPKRILCATFL-DGSELLVGGDNEWISLKD 235 (362)
T ss_pred ccCC-cceeeEEcCCCCEEEEEe-ccEEEEEecccHhH-----h-hh-hhccccceeeeec-CCceEEEecCCceEEEec
Confidence 5322 23348999998 455554 45688998763211 1 11 1112446666665 567888999999999999
Q ss_pred cCCcccccceeecCcceEEEEEe----cCCEEEEEeCCCcEEEEecCCC--CceeEEEEecCCCCceeEEEEec
Q 012007 353 CEKHLSHGGVLRGHKMAVLCLAA----AGNLVFSGSADRNICLWRREES--GAHSCLAVLTGHTGPVKCLAVEE 420 (473)
Q Consensus 353 ~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~h~~~V~~l~~~~ 420 (473)
... ..+...+.+|...|-.+.+ ++.+|++++.||.|+|||++.. .....+..+.. ...++|+...-
T Consensus 236 ~ds-~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~~~ 307 (362)
T KOG0294|consen 236 TDS-DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRVKL 307 (362)
T ss_pred cCC-CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeeehh
Confidence 987 4555788899999988874 3579999999999999999863 12234555443 45677776553
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-27 Score=207.35 Aligned_cols=286 Identities=22% Similarity=0.328 Sum_probs=226.2
Q ss_pred eeeeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCCccc-------------------ccc-ccCcccEEEEEEeCCC
Q 012007 116 IGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKEF-------------------SGF-KSNSGLVKAIIISGDS 173 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~~~-------------------~~~-~~h~~~V~~l~~s~~~ 173 (473)
+..+..|.-+|+++.. +++++++++.||+|.=|++.... ..- +.|...|.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 5677789988888764 57899999999999999743110 111 3788899999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE
Q 012007 174 NKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG 253 (473)
Q Consensus 174 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~ 253 (473)
+||++|+.|..|.||+.++.+....+. +|.+.|.+++|-.....|+++
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~--------------------------------ghr~~V~~L~fr~gt~~lys~ 262 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFK--------------------------------GHRGAVSSLAFRKGTSELYSA 262 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhccc--------------------------------ccccceeeeeeecCccceeee
Confidence 999999999999999999887544322 599999999999988899999
Q ss_pred eCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEE-EEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEE
Q 012007 254 SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVF-TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAV 332 (473)
Q Consensus 254 s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 332 (473)
+.|+.|++|++.....+.++.+|.+.|..|.....+.++ +|+.|+++++|++... ....+.++.+.+-|++|
T Consensus 263 s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-------sqlifrg~~~sidcv~~ 335 (479)
T KOG0299|consen 263 SADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-------SQLIFRGGEGSIDCVAF 335 (479)
T ss_pred ecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc-------ceeeeeCCCCCeeeEEE
Confidence 999999999999999999999999999999887777555 5559999999998422 23556788889999999
Q ss_pred ccCCCEEEEeCCCCcEEEEecCCcccccceeecCc-----------ceEEEEE--ecCCEEEEEeCCCcEEEEecCCCC-
Q 012007 333 NQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHK-----------MAVLCLA--AAGNLVFSGSADRNICLWRREESG- 398 (473)
Q Consensus 333 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~- 398 (473)
-.+. .+++|+.||.|.+|++.+...+......|. ..+++++ +..+++++|+.+|.|++|.+..+-
T Consensus 336 In~~-HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 336 INDE-HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred eccc-ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence 8654 577999999999999976544332222222 2565555 568899999999999999998742
Q ss_pred ceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 399 AHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 399 ~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
...++..+. -.+.|++|+|++++.. +++..+....+-=|-...
T Consensus 415 ~i~~l~~ls-~~GfVNsl~f~~sgk~------------ivagiGkEhRlGRW~~~k 457 (479)
T KOG0299|consen 415 AINLLYSLS-LVGFVNSLAFSNSGKR------------IVAGIGKEHRLGRWWCLK 457 (479)
T ss_pred ccceeeecc-cccEEEEEEEccCCCE------------EEEecccccccceeeEee
Confidence 234555555 5788999999999984 677777777776666543
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-26 Score=220.16 Aligned_cols=202 Identities=16% Similarity=0.183 Sum_probs=154.5
Q ss_pred eccCCeeEEEEcCC-CCEEEEEeCCCCEEEEEcCCCe--------eeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEE
Q 012007 233 RHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCK--------CLESINAHDDAINSVVAGFDS--LVFTGSADGTVK 301 (473)
Q Consensus 233 ~~~~~v~~l~~~~~-~~~l~s~s~dg~v~vwd~~~~~--------~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~ 301 (473)
+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.++. ++..+.+|...|.+++|+|++ .+++++.|+.|+
T Consensus 72 gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIr 151 (568)
T PTZ00420 72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVN 151 (568)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEE
Confidence 59999999999996 7899999999999999997642 345678899999999999987 467899999999
Q ss_pred EEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEE-------EE
Q 012007 302 VWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLC-------LA 374 (473)
Q Consensus 302 vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~-------~~ 374 (473)
+||++.+. ....+ .|...|.+++|+|+|.+|++++.|+.|+|||++++... ..+.+|...+.+ ++
T Consensus 152 IWDl~tg~------~~~~i-~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i-~tl~gH~g~~~s~~v~~~~fs 223 (568)
T PTZ00420 152 IWDIENEK------RAFQI-NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA-SSFHIHDGGKNTKNIWIDGLG 223 (568)
T ss_pred EEECCCCc------EEEEE-ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE-EEEecccCCceeEEEEeeeEc
Confidence 99997432 11222 25578999999999999999999999999999986544 456778764321 23
Q ss_pred ecCCEEEEEeCCC----cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEE
Q 012007 375 AAGNLVFSGSADR----NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVW 450 (473)
Q Consensus 375 ~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW 450 (473)
+++.+|++++.|+ .|+|||++..........+..+.+.+......+++. ++++|+.|+.|++|
T Consensus 224 ~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~-------------l~lsGkGD~tIr~~ 290 (568)
T PTZ00420 224 GDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGL-------------IYLIGKGDGNCRYY 290 (568)
T ss_pred CCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCC-------------EEEEEECCCeEEEE
Confidence 5788999988774 799999986332222223334444444444444455 88999999999999
Q ss_pred EcCCC
Q 012007 451 RVSEH 455 (473)
Q Consensus 451 ~i~~~ 455 (473)
++..+
T Consensus 291 e~~~~ 295 (568)
T PTZ00420 291 QHSLG 295 (568)
T ss_pred EccCC
Confidence 99765
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-26 Score=194.44 Aligned_cols=299 Identities=18% Similarity=0.276 Sum_probs=216.1
Q ss_pred ceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCCcc----cccccc--CcccEEEEEEeCCCCEE-EEEeCCCeE
Q 012007 115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE----FSGFKS--NSGLVKAIIISGDSNKI-FTGHQDGKI 185 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~~----~~~~~~--h~~~V~~l~~s~~~~~l-~s~~~dg~i 185 (473)
.+..|++|.+.|++++|+ |++|||++.|++|+||++..- -+.++. .-+.-+.++|.||-+-+ +++....++
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence 467899999999998874 999999999999999986531 111111 12356889999997654 455556689
Q ss_pred EEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 012007 186 RIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS 265 (473)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~ 265 (473)
++|.+...+.-. ......+ .........|.-.|..+-...++.+|++++.|..|.+|+++
T Consensus 158 ~vyk~~K~~dG~-~~~~~v~-------------------~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk 217 (420)
T KOG2096|consen 158 CVYKLVKKTDGS-GSHHFVH-------------------IDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK 217 (420)
T ss_pred EEEEeeecccCC-CCccccc-------------------ccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC
Confidence 999876543200 0000000 00000111266667777777788999999999999999998
Q ss_pred CCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcce--eeeeeeccCCccEEEEEEccCCCEEEEe
Q 012007 266 DCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKH--CLAQVLLKHENAVTALAVNQESAVVYCG 342 (473)
Q Consensus 266 ~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~l~~~ 342 (473)
|+.+..+......-...+.+|+| ++++++..--|++|.+-.+..+..+ ..+..+.+|...|+.++|+++...+++.
T Consensus 218 -Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv 296 (420)
T KOG2096|consen 218 -GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV 296 (420)
T ss_pred -CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEE
Confidence 99999998877777888899999 7788888899999998655443332 2345678999999999999999999999
Q ss_pred CCCCcEEEEecCCccccc---ceee---------cCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCC
Q 012007 343 SSDGLVNFWECEKHLSHG---GVLR---------GHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHT 410 (473)
Q Consensus 343 ~~dg~i~iwd~~~~~~~~---~~~~---------~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~ 410 (473)
+.||+++|||.+-..... ..++ +....-+.++|+|+.|+.+. ...+++|..++++...++. ..|.
T Consensus 297 SkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e--~~h~ 373 (420)
T KOG2096|consen 297 SKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELE--DIHS 373 (420)
T ss_pred ecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHH--Hhhc
Confidence 999999999975211110 0111 11122477889999988876 4579999998854433333 4688
Q ss_pred CceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 411 GPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 411 ~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
+.|.+|+|+++++ +++|+| |..+++..
T Consensus 374 ~~Is~is~~~~g~-------------~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 374 TTISSISYSSDGK-------------YIATCG-DRYVRVIR 400 (420)
T ss_pred CceeeEEecCCCc-------------EEeeec-ceeeeeec
Confidence 9999999999999 788886 67888887
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=190.52 Aligned_cols=232 Identities=16% Similarity=0.201 Sum_probs=195.2
Q ss_pred ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeecc
Q 012007 156 GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY 235 (473)
Q Consensus 156 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (473)
.+++|..+++.|.++.+|.+|++|+.|.++.||-..+++..-... +|.
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~--------------------------------GHt 52 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYD--------------------------------GHT 52 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeec--------------------------------CCC
Confidence 468899999999999999999999999999999887776443332 699
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeC------CCcEEEEeCcccC
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSA------DGTVKVWRRELQG 309 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~------dg~i~vwd~~~~~ 309 (473)
+.|+|++.+.+.+.|++|+.|.++++||+++|+++..++ ...+|..+.|+.++.++..+. .+.|.++|++...
T Consensus 53 GavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 53 GAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDS 131 (327)
T ss_pred ceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence 999999999999999999999999999999999999998 457899999999985444443 3578999998443
Q ss_pred C-CcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEE--EEEecCCEEEEEeCC
Q 012007 310 K-GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVL--CLAAAGNLVFSGSAD 386 (473)
Q Consensus 310 ~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~s~~~d 386 (473)
. .....+...+..+.+.++.+-|.|-+++|++|..||.|.+||++++.+.......|...|. +++++..++++++.|
T Consensus 132 ~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~D 211 (327)
T KOG0643|consen 132 SDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKD 211 (327)
T ss_pred hhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccC
Confidence 1 1233345566677899999999999999999999999999999998877777677777774 556789999999999
Q ss_pred CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCC
Q 012007 387 RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDH 424 (473)
Q Consensus 387 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 424 (473)
.+-++||..+ ..++.++.. ..||++.+++|...+
T Consensus 212 ttakl~D~~t---l~v~Kty~t-e~PvN~aaisP~~d~ 245 (327)
T KOG0643|consen 212 TTAKLVDVRT---LEVLKTYTT-ERPVNTAAISPLLDH 245 (327)
T ss_pred ccceeeeccc---eeeEEEeee-cccccceecccccce
Confidence 9999999998 677777654 679999999998773
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-27 Score=192.16 Aligned_cols=253 Identities=19% Similarity=0.252 Sum_probs=204.1
Q ss_pred cccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccC
Q 012007 157 FKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYD 236 (473)
Q Consensus 157 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (473)
...|...|..+...-.|++|+||+.|++|+|+.+........ ...+.+|.+
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~l-----------------------------l~~L~Gh~G 57 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKL-----------------------------LAELTGHSG 57 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCcee-----------------------------eeEecCCCC
Confidence 345888888888888899999999999999999987653111 122336999
Q ss_pred CeeEEEEcC--CCCEEEEEeCCCCEEEEEcCCCe--eeEEeecCCCceeEEEEcCCC---EEEEEeCCCcEEEEeCcccC
Q 012007 237 AVSCLSLNA--EQGLLYSGSWDKTLKVWRISDCK--CLESINAHDDAINSVVAGFDS---LVFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 237 ~v~~l~~~~--~~~~l~s~s~dg~v~vwd~~~~~--~~~~~~~~~~~v~~l~~~~~~---~l~s~~~dg~i~vwd~~~~~ 309 (473)
+|..++|.. .|.+|++++.||.|.||.-++++ .......|...|++++|.|.+ .|++++.||.|.|.+.+..
T Consensus 58 PVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~- 136 (299)
T KOG1332|consen 58 PVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS- 136 (299)
T ss_pred CeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC-
Confidence 999999976 89999999999999999988774 345566899999999999986 7899999999999998754
Q ss_pred CCcceeeeeeeccCCccEEEEEEccC---C-----------CEEEEeCCCCcEEEEecCCc-ccccceeecCcceEEEEE
Q 012007 310 KGTKHCLAQVLLKHENAVTALAVNQE---S-----------AVVYCGSSDGLVNFWECEKH-LSHGGVLRGHKMAVLCLA 374 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~l~~~~~---~-----------~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~ 374 (473)
...........|.-.|++++|.|. | +.|++|+.|..|+||+.... ......+.+|...|..++
T Consensus 137 --g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVA 214 (299)
T KOG1332|consen 137 --GGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVA 214 (299)
T ss_pred --CCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhh
Confidence 233445667889999999999985 4 56999999999999998764 233345889999997666
Q ss_pred ec------CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEE
Q 012007 375 AA------GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVK 448 (473)
Q Consensus 375 ~~------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~ 448 (473)
+. ..+|++++.||++.||..+..........+......+..+.|+..+. +|+.++.|+.|.
T Consensus 215 waP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn-------------~LaVs~GdNkvt 281 (299)
T KOG1332|consen 215 WAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGN-------------ILAVSGGDNKVT 281 (299)
T ss_pred hccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecccc-------------EEEEecCCcEEE
Confidence 54 35899999999999998875322333344455677899999999998 899999999999
Q ss_pred EEEcCC
Q 012007 449 VWRVSE 454 (473)
Q Consensus 449 iW~i~~ 454 (473)
+|.-+.
T Consensus 282 lwke~~ 287 (299)
T KOG1332|consen 282 LWKENV 287 (299)
T ss_pred EEEeCC
Confidence 998653
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=213.85 Aligned_cols=282 Identities=17% Similarity=0.256 Sum_probs=212.5
Q ss_pred CCEEEEeeCCCcEEEeeCCc--------cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccc
Q 012007 133 GDLLYTGSDSKNIRVWKNLK--------EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSL 204 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~~--------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 204 (473)
...||.+.+||.|.++|..+ .+..+..|.++|..+.|-|....|++++.|.++++||+.........
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~----- 138 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR----- 138 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce-----
Confidence 45899999999999998652 24556779999999999997788999999999999999887643321
Q ss_pred cccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCe---------------
Q 012007 205 PTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCK--------------- 268 (473)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~--------------- 268 (473)
..++|...|.+++|.+ +...|++|+.||.|.|||++-..
T Consensus 139 -------------------------~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~ 193 (720)
T KOG0321|consen 139 -------------------------LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRH 193 (720)
T ss_pred -------------------------eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccc
Confidence 2346999999999999 55689999999999999986322
Q ss_pred ------------eeEEeecCCCc----eeEEEEcCCCEEEEEeC-CCcEEEEeCcccCCCcceeeeee--eccC---Ccc
Q 012007 269 ------------CLESINAHDDA----INSVVAGFDSLVFTGSA-DGTVKVWRRELQGKGTKHCLAQV--LLKH---ENA 326 (473)
Q Consensus 269 ------------~~~~~~~~~~~----v~~l~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~--~~~~---~~~ 326 (473)
.+...+++... |+.+.|-.+..|++++. |+.|+|||++.......+..... +..| ...
T Consensus 194 n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G 273 (720)
T KOG0321|consen 194 NTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVG 273 (720)
T ss_pred cCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceee
Confidence 01112233333 44566666668888887 99999999985433222222211 2222 345
Q ss_pred EEEEEEccCCCEEEEeCCCCcEEEEecCCcc-cccceeecCcce----EEEEEecCCEEEEEeCCCcEEEEecCCCCcee
Q 012007 327 VTALAVNQESAVVYCGSSDGLVNFWECEKHL-SHGGVLRGHKMA----VLCLAAAGNLVFSGSADRNICLWRREESGAHS 401 (473)
Q Consensus 327 v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~----v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 401 (473)
++++.....|.+|++.+.|+.|++|++.... .+...+.++... -.+++|++.+|++|+.|...++|.+.+. ..
T Consensus 274 ~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~--e~ 351 (720)
T KOG0321|consen 274 QVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSP--EA 351 (720)
T ss_pred eEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCc--cC
Confidence 7888888889999999999999999997532 233334444322 2567899999999999999999999875 45
Q ss_pred EEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 402 CLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 402 ~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
....+.+|.-.|++++|.|.... -++|+++|-+++||++..+...
T Consensus 352 ~~~~l~Ght~eVt~V~w~pS~~t------------~v~TcSdD~~~kiW~l~~~l~e 396 (720)
T KOG0321|consen 352 PPALLLGHTREVTTVRWLPSATT------------PVATCSDDFRVKIWRLSNGLEE 396 (720)
T ss_pred ChhhhhCcceEEEEEeeccccCC------------CceeeccCcceEEEeccCchhh
Confidence 67778899999999999997653 4888899999999999765433
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=196.28 Aligned_cols=279 Identities=18% Similarity=0.264 Sum_probs=229.0
Q ss_pred EEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeec
Q 012007 135 LLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSS 214 (473)
Q Consensus 135 ~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (473)
.+++.-.+++++. ..++.+.+|...|..++.......+.+++.|.+.+||.++++.+.....
T Consensus 126 rivssFk~~t~~~----~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~-------------- 187 (481)
T KOG0300|consen 126 RIVSSFKDGTVKF----RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYT-------------- 187 (481)
T ss_pred hheeeecCCceeE----eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeec--------------
Confidence 3445555555322 4466788999999999998888899999999999999999998765544
Q ss_pred CCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEc------CC----------------------
Q 012007 215 VNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI------SD---------------------- 266 (473)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~------~~---------------------- 266 (473)
+|.+.|++|+|++.+.++++++.|++-.||.. ..
T Consensus 188 ------------------GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d 249 (481)
T KOG0300|consen 188 ------------------GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRD 249 (481)
T ss_pred ------------------ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccc
Confidence 69999999999999999999999999999951 10
Q ss_pred ------------CeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEc
Q 012007 267 ------------CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVN 333 (473)
Q Consensus 267 ------------~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 333 (473)
..++..+.+|...|.+..|...+ .+++++.|.+..+||++++ .++..+.+|....+.++-+
T Consensus 250 ~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg------e~v~~LtGHd~ELtHcstH 323 (481)
T KOG0300|consen 250 TDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG------EVVNILTGHDSELTHCSTH 323 (481)
T ss_pred cccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC------ceeccccCcchhccccccC
Confidence 01456778899999999998777 8999999999999999743 3578899999999999999
Q ss_pred cCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEec-CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCc
Q 012007 334 QESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA-GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGP 412 (473)
Q Consensus 334 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 412 (473)
|..+++++.+.|-+.++||++........+.||...|++..+. +..+++|+.|.+|++||+++. ..++.++.. ..+
T Consensus 324 ptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNM--RsplATIRt-dS~ 400 (481)
T KOG0300|consen 324 PTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNM--RSPLATIRT-DSP 400 (481)
T ss_pred CcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccc--cCcceeeec-CCc
Confidence 9999999999999999999997777778999999999999987 788999999999999999985 345666654 568
Q ss_pred eeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCCCCccccccc
Q 012007 413 VKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGLHSPTQMRRQ 471 (473)
Q Consensus 413 V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~~~~~~~~~~ 471 (473)
++.++.+..++ +++.--++..|++||++.......+-......+++
T Consensus 401 ~NRvavs~g~~-------------iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRM 446 (481)
T KOG0300|consen 401 ANRVAVSKGHP-------------IIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRM 446 (481)
T ss_pred cceeEeecCCc-------------eEEeccCCceEEEEecCCCccccCCccccccccee
Confidence 99999998887 78888888899999998664333332233334443
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-25 Score=187.89 Aligned_cols=263 Identities=17% Similarity=0.235 Sum_probs=200.8
Q ss_pred ccEEEEEec--CCEEEEeeCCCcEEEeeCCc-cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEe
Q 012007 124 GHIYSLAAS--GDLLYTGSDSKNIRVWKNLK-EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKR 200 (473)
Q Consensus 124 ~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~-~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 200 (473)
+.|.++.++ +..|++++.||.+++||... .+.....|..++.+++|.++ ..+++|+.||.|+.+|+.+++......
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~igt 92 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQIGT 92 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcceeecc
Confidence 445566654 66777888999999999763 34444558999999999874 489999999999999999887544332
Q ss_pred eccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCce
Q 012007 201 VGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAI 280 (473)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v 280 (473)
|..+|.||.+.+....+++|++|++|++||.+.......+.. ...|
T Consensus 93 ---------------------------------h~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkV 138 (323)
T KOG1036|consen 93 ---------------------------------HDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKV 138 (323)
T ss_pred ---------------------------------CCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceE
Confidence 999999999999889999999999999999998666555553 3478
Q ss_pred eEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCc---c
Q 012007 281 NSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH---L 357 (473)
Q Consensus 281 ~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~---~ 357 (473)
.++... ++.|++|+.|..+.+||++..... .......-+..+.++++.|++.=+++++-||.|.+=.++.. .
T Consensus 139 y~~~v~-g~~LvVg~~~r~v~iyDLRn~~~~----~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~ 213 (323)
T KOG1036|consen 139 YCMDVS-GNRLVVGTSDRKVLIYDLRNLDEP----FQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ 213 (323)
T ss_pred EEEecc-CCEEEEeecCceEEEEEcccccch----hhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh
Confidence 888764 447888999999999999854321 12223344567899999998888899999999887544432 1
Q ss_pred cccceeecCc---------ceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCc
Q 012007 358 SHGGVLRGHK---------MAVLCLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDH 426 (473)
Q Consensus 358 ~~~~~~~~~~---------~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~ 426 (473)
.....++.|. -+|.++++ --..|++|+.||.|.+||+.+ .+.+..+......|..++|+.++.
T Consensus 214 skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~---rKrl~q~~~~~~SI~slsfs~dG~--- 287 (323)
T KOG1036|consen 214 SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFN---RKRLKQLAKYETSISSLSFSMDGS--- 287 (323)
T ss_pred hhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcc---hhhhhhccCCCCceEEEEeccCCC---
Confidence 1222334443 23444544 466899999999999999988 566777777777899999999998
Q ss_pred ccccCCCccEEEEEee
Q 012007 427 EYHQKGDQRWTVYSGS 442 (473)
Q Consensus 427 ~~~~~~~~~~~l~s~s 442 (473)
.||.++
T Consensus 288 ----------~LAia~ 293 (323)
T KOG1036|consen 288 ----------LLAIAS 293 (323)
T ss_pred ----------eEEEEe
Confidence 788876
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-26 Score=191.51 Aligned_cols=261 Identities=17% Similarity=0.231 Sum_probs=187.7
Q ss_pred ccccccccCcccEEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceee
Q 012007 152 KEFSGFKSNSGLVKAIIISG-DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVL 230 (473)
Q Consensus 152 ~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (473)
+.+..-......|.+|+|+| ...+|+.++.||+||+|+++......-..
T Consensus 18 kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka------------------------------ 67 (347)
T KOG0647|consen 18 KDYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKA------------------------------ 67 (347)
T ss_pred cceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchh------------------------------
Confidence 33333445678899999999 45567789999999999998742111111
Q ss_pred EeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC---EEEEEeCCCcEEEEeCcc
Q 012007 231 KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS---LVFTGSADGTVKVWRREL 307 (473)
Q Consensus 231 ~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~---~l~s~~~dg~i~vwd~~~ 307 (473)
...|.++|.+++|+.+|..+++|+.|+.+++||+.++ .+..+..|.++|.++.|-+.. .|++|+.|.+|++||.+.
T Consensus 68 ~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~ 146 (347)
T KOG0647|consen 68 QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS 146 (347)
T ss_pred hhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCC
Confidence 1139999999999999999999999999999999999 456777899999999987654 799999999999999984
Q ss_pred cCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccce-e--ecCcceEEEEEecCCEEEEEe
Q 012007 308 QGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV-L--RGHKMAVLCLAAAGNLVFSGS 384 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~--~~~~~~v~~~~~~~~~l~s~~ 384 (473)
... +.. ..-...+.++.. ...+++++..+..|.+|+++++....+. . ..+.....++..+....+.|+
T Consensus 147 ~~p------v~t-~~LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGs 217 (347)
T KOG0647|consen 147 SNP------VAT-LQLPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGS 217 (347)
T ss_pred CCe------eee-eeccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeee
Confidence 321 111 112344555544 3457888999999999999764322111 1 112233344445666679999
Q ss_pred CCCcEEEEecCCCCceeEEEEecCCC---------CceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 385 ADRNICLWRREESGAHSCLAVLTGHT---------GPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 385 ~dg~i~iwd~~~~~~~~~~~~~~~h~---------~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
-+|.+.|..++.+.. ..-..++.|. ..|++|+|+|... .|+|+|.||++.+||-...
T Consensus 218 iEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-------------tlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 218 IEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-------------TLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred ecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeecccc-------------eEEEecCCceEEEecchhh
Confidence 999999999987422 2233344443 2688999999877 7999999999999998776
Q ss_pred CCCccCCCCcc
Q 012007 456 APDLKGLHSPT 466 (473)
Q Consensus 456 ~~~~~~~~~~~ 466 (473)
.++......+.
T Consensus 284 ~kLk~s~~~~q 294 (347)
T KOG0647|consen 284 TKLKTSETHPQ 294 (347)
T ss_pred hhhhccCcCCC
Confidence 65544333333
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-24 Score=185.77 Aligned_cols=251 Identities=15% Similarity=0.214 Sum_probs=197.0
Q ss_pred cccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeec
Q 012007 155 SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRH 234 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
+.+....+.|++|.|+++|.+|++++.|.++++||..+++....... +
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s--------------------------------k 55 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS--------------------------------K 55 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeec--------------------------------c
Confidence 44555678899999999999999999999999999998876554432 4
Q ss_pred cCCeeEEEEcCCCCEEEEEeC--CCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCC
Q 012007 235 YDAVSCLSLNAEQGLLYSGSW--DKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 235 ~~~v~~l~~~~~~~~l~s~s~--dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
.-.|..++|....+.++.++. |.+|+..++.+.+.++.+.+|...|+.|..+|.+ .+++++.|++|++||++....
T Consensus 56 kyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c- 134 (311)
T KOG1446|consen 56 KYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC- 134 (311)
T ss_pred cccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC-
Confidence 446777888776676776665 8899999999999999999999999999999987 999999999999999984321
Q ss_pred cceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCc-ccccceee-----cCcceEEEEEecCCEEEEEeC
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH-LSHGGVLR-----GHKMAVLCLAAAGNLVFSGSA 385 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~-----~~~~~v~~~~~~~~~l~s~~~ 385 (473)
.... +...-..++|+|+|-++|++.....|++||++.. ..+...+. ...-..+.++++|++|+.+..
T Consensus 135 ----qg~l---~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~ 207 (311)
T KOG1446|consen 135 ----QGLL---NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN 207 (311)
T ss_pred ----ceEE---ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC
Confidence 1111 1223345899999999999998889999999853 22211111 122344778899999999999
Q ss_pred CCcEEEEecCCCCceeEEEEecCCCCc---eeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccC
Q 012007 386 DRNICLWRREESGAHSCLAVLTGHTGP---VKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKG 461 (473)
Q Consensus 386 dg~i~iwd~~~~~~~~~~~~~~~h~~~---V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~ 461 (473)
.+.+++.|.-.+ ..+..+.++... -...+|.||++ ++++|+.||+|.+|++.++.+....
T Consensus 208 ~s~~~~lDAf~G---~~~~tfs~~~~~~~~~~~a~ftPds~-------------Fvl~gs~dg~i~vw~~~tg~~v~~~ 270 (311)
T KOG1446|consen 208 ASFIYLLDAFDG---TVKSTFSGYPNAGNLPLSATFTPDSK-------------FVLSGSDDGTIHVWNLETGKKVAVL 270 (311)
T ss_pred CCcEEEEEccCC---cEeeeEeeccCCCCcceeEEECCCCc-------------EEEEecCCCcEEEEEcCCCcEeeEe
Confidence 999999999884 456666655432 26788999999 8999999999999999888765443
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=207.36 Aligned_cols=264 Identities=17% Similarity=0.211 Sum_probs=197.5
Q ss_pred cccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeec
Q 012007 155 SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRH 234 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
..+++|+..|.++++.|.|-.|++|+.|-.|++||+..........-.-.| ..
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P---------------------------~E 213 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP---------------------------CE 213 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCc---------------------------cc
Confidence 457889999999999999999999999999999999876543322111111 14
Q ss_pred cCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEE------------eecCCCceeEEEEcCCC--EEEEEeCCCcE
Q 012007 235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES------------INAHDDAINSVVAGFDS--LVFTGSADGTV 300 (473)
Q Consensus 235 ~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~------------~~~~~~~v~~l~~~~~~--~l~s~~~dg~i 300 (473)
...|.++.|++.+..|++.+.....+|+|-...+.+.. -++|...++|.+|+|.. .+++++.||++
T Consensus 214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl 293 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL 293 (641)
T ss_pred ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence 56799999999999999999889999999544333322 25788999999999986 89999999999
Q ss_pred EEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccc--ccceeecCcc--eEEE--EE
Q 012007 301 KVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLS--HGGVLRGHKM--AVLC--LA 374 (473)
Q Consensus 301 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~--~v~~--~~ 374 (473)
++||+....+...........+..-.++.++|++++.+||+|+.||.|.+|+...... ...+...|.. .|+| |+
T Consensus 294 RiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS 373 (641)
T KOG0772|consen 294 RIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS 373 (641)
T ss_pred EEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec
Confidence 9999975432111111122234556789999999999999999999999999864322 2234445655 5555 45
Q ss_pred ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCC--CCceeEEEEecCCCCCcccccCCCccEEEEEee------CCCc
Q 012007 375 AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGH--TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS------LDKS 446 (473)
Q Consensus 375 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s------~Dg~ 446 (473)
++|++|++-+.|+++++||++.. .+++....+- .-+-+.++|+|+.+ +|++|. ..|.
T Consensus 374 ~dg~~LlSRg~D~tLKvWDLrq~--kkpL~~~tgL~t~~~~tdc~FSPd~k-------------li~TGtS~~~~~~~g~ 438 (641)
T KOG0772|consen 374 YDGNYLLSRGFDDTLKVWDLRQF--KKPLNVRTGLPTPFPGTDCCFSPDDK-------------LILTGTSAPNGMTAGT 438 (641)
T ss_pred cccchhhhccCCCceeeeecccc--ccchhhhcCCCccCCCCccccCCCce-------------EEEecccccCCCCCce
Confidence 67999999999999999999975 3455554443 33568899999998 888876 3467
Q ss_pred EEEEEcCCCCCCcc
Q 012007 447 VKVWRVSEHAPDLK 460 (473)
Q Consensus 447 v~iW~i~~~~~~~~ 460 (473)
+.+||-.+.....+
T Consensus 439 L~f~d~~t~d~v~k 452 (641)
T KOG0772|consen 439 LFFFDRMTLDTVYK 452 (641)
T ss_pred EEEEeccceeeEEE
Confidence 88888776554444
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=203.88 Aligned_cols=251 Identities=19% Similarity=0.251 Sum_probs=200.8
Q ss_pred eeeeeeecccEEEEEe---cCCEEEEeeCCCcEEEeeCCcc------------ccccccCcccEEEEEEeCCC-CEEEEE
Q 012007 116 IGSIVRKEGHIYSLAA---SGDLLYTGSDSKNIRVWKNLKE------------FSGFKSNSGLVKAIIISGDS-NKIFTG 179 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~---~g~~l~tg~~dg~i~vwd~~~~------------~~~~~~h~~~V~~l~~s~~~-~~l~s~ 179 (473)
+.....|.|.|..+.. +..++|+++..+.|.|||..+. -..+.+|.+.=+.|+|++.. -+|++|
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~ 196 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG 196 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec
Confidence 4444568888877653 4778999999999999985421 12678898888889998864 479999
Q ss_pred eCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCC
Q 012007 180 HQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKT 258 (473)
Q Consensus 180 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~ 258 (473)
+.|+.|.+||+........ . ........+|.+.|..++|++ +..+|++++.|+.
T Consensus 197 ~~d~~i~lwdi~~~~~~~~-~------------------------~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~ 251 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKEDK-V------------------------VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK 251 (422)
T ss_pred cCCCcEEEEeccccccCCc-c------------------------ccceEEeecCCcceehhhccccchhhheeecCCCe
Confidence 9999999999986643200 0 001123336999999999999 5678999999999
Q ss_pred EEEEEcC--CCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc
Q 012007 259 LKVWRIS--DCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ 334 (473)
Q Consensus 259 v~vwd~~--~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 334 (473)
+.|||++ +.++....++|.+.|+|++|+|-+ .|++|+.|++|++||+|. -......+.+|...|..+.|+|
T Consensus 252 L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn-----L~~~lh~~e~H~dev~~V~WSP 326 (422)
T KOG0264|consen 252 LMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN-----LNKPLHTFEGHEDEVFQVEWSP 326 (422)
T ss_pred EEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh-----cccCceeccCCCcceEEEEeCC
Confidence 9999999 566777888999999999999876 899999999999999984 3336788999999999999999
Q ss_pred C-CCEEEEeCCCCcEEEEecCCcc-------------cccceeecCcceEEEEEec---CCEEEEEeCCCcEEEEecCC
Q 012007 335 E-SAVVYCGSSDGLVNFWECEKHL-------------SHGGVLRGHKMAVLCLAAA---GNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 335 ~-~~~l~~~~~dg~i~iwd~~~~~-------------~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~ 396 (473)
. ...|++++.|+.+.+||+..-. .+...-.||...|..++++ .-.|++.+.|+.++||.+..
T Consensus 327 h~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 327 HNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 5 4789999999999999986421 1224556899999998887 44788999999999999874
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-24 Score=196.01 Aligned_cols=305 Identities=17% Similarity=0.208 Sum_probs=217.4
Q ss_pred ccEEEEEec-CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEe
Q 012007 124 GHIYSLAAS-GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKR 200 (473)
Q Consensus 124 ~~V~~~~~~-g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 200 (473)
..|.|+.|- +.-++||..+|.|.||+.. +..+....|.+.|.+++...+| .|++|+.|..|..||-.-.+......
T Consensus 247 k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~G-tllSGgKDRki~~Wd~~y~k~r~~el 325 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDG-TLLSGGKDRKIILWDDNYRKLRETEL 325 (626)
T ss_pred eEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCc-cEeecCccceEEeccccccccccccC
Confidence 569999987 4468899999999999864 3344445899999999999999 55569999999999932222111111
Q ss_pred eccccc--------cceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEE
Q 012007 201 VGSLPT--------FKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES 272 (473)
Q Consensus 201 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~ 272 (473)
...... ..-++....+....-.+.+.......+|.+....++.+|+.+++++++.|+.+++|+ ..+++.+
T Consensus 326 Pe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt 403 (626)
T KOG2106|consen 326 PEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWT 403 (626)
T ss_pred chhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEE
Confidence 100000 112233333333344556666677889999999999999999999999999999999 4555544
Q ss_pred eecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEe
Q 012007 273 INAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWE 352 (473)
Q Consensus 273 ~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd 352 (473)
.. -.+++.|+.|+|.+.++.|...|...+.|.++ ..++..-.. ..++++++|+|+|.+||.|+.|+.|+||.
T Consensus 404 ~~-~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~------~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~ 475 (626)
T KOG2106|consen 404 KI-IEDPAECADFHPSGVVAVGTATGRWFVLDTET------QDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYR 475 (626)
T ss_pred EE-ecCceeEeeccCcceEEEeeccceEEEEeccc------ceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEE
Confidence 43 46788999999999999999999999999873 223333333 88999999999999999999999999998
Q ss_pred cCCc-ccccceeecCcceEEE--EEecCCEEEEEeCCCcEEEE-------------------------------------
Q 012007 353 CEKH-LSHGGVLRGHKMAVLC--LAAAGNLVFSGSADRNICLW------------------------------------- 392 (473)
Q Consensus 353 ~~~~-~~~~~~~~~~~~~v~~--~~~~~~~l~s~~~dg~i~iw------------------------------------- 392 (473)
+... ......-+.+...++. ++.|+++|.+-+.|-.|..|
T Consensus 476 Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~ 555 (626)
T KOG2106|consen 476 VSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDIN 555 (626)
T ss_pred ECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHH
Confidence 7642 2222222222234433 33445555555555555555
Q ss_pred -----------------------ecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEE
Q 012007 393 -----------------------RREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKV 449 (473)
Q Consensus 393 -----------------------d~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~i 449 (473)
...-.........+.+|.+-|++++|.-+.. .|++.+.|.+|..
T Consensus 556 a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~-------------~li~tg~D~Si~q 622 (626)
T KOG2106|consen 556 AVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDS-------------HLISTGKDTSIMQ 622 (626)
T ss_pred HhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCc-------------eEEecCCCceEEE
Confidence 3332223344556778999999999999887 6777779999999
Q ss_pred EEc
Q 012007 450 WRV 452 (473)
Q Consensus 450 W~i 452 (473)
|++
T Consensus 623 W~l 625 (626)
T KOG2106|consen 623 WRL 625 (626)
T ss_pred EEe
Confidence 986
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-25 Score=204.12 Aligned_cols=308 Identities=16% Similarity=0.211 Sum_probs=229.9
Q ss_pred eeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCC--EEEEEeCCCeEEEEe
Q 012007 116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSN--KIFTGHQDGKIRIWK 189 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~--~l~s~~~dg~i~vwd 189 (473)
-..+.||++.|.+++.+ |.+||+|+.||+||||.+. .++..+. -.+.|.||+|+|.+. .||++-.+ .+.|-+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivn 470 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE-CVLIVN 470 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC-ceEEeC
Confidence 44678999999998855 9999999999999999865 4444444 345899999999874 44444434 466665
Q ss_pred CCCCCeeeEEeeccccccceeEeec---CCC-cceEEE-------eecceeeEeeccCCeeEEEEcCCCCEEEEEeCC--
Q 012007 190 VSRKNASVHKRVGSLPTFKDYVKSS---VNP-KNYVEV-------RRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD-- 256 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~-------~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d-- 256 (473)
..-+........ .+.+... ..+ ...+.. ......+.+.|...|..+.|+..|.||++...+
T Consensus 471 p~~G~~~e~~~t------~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~ 544 (733)
T KOG0650|consen 471 PIFGDRLEVGPT------KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG 544 (733)
T ss_pred ccccchhhhcch------hhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence 443321111000 0000000 000 001110 111235677899999999999999999998654
Q ss_pred -CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc
Q 012007 257 -KTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ 334 (473)
Q Consensus 257 -g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 334 (473)
..|.|+++...+...-|....+.|.++.|+|.. +|+++ ....|++||+. .+.++..+......|..++++|
T Consensus 545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVa-Tq~~vRiYdL~------kqelvKkL~tg~kwiS~msihp 617 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVA-TQRSVRIYDLS------KQELVKKLLTGSKWISSMSIHP 617 (733)
T ss_pred cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEE-eccceEEEehh------HHHHHHHHhcCCeeeeeeeecC
Confidence 469999998877777777778899999999988 55544 46789999995 4556666777778899999999
Q ss_pred CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCC--EEEEEeCCCcEEEEecC------CCCceeEEEEe
Q 012007 335 ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGN--LVFSGSADRNICLWRRE------ESGAHSCLAVL 406 (473)
Q Consensus 335 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~------~~~~~~~~~~~ 406 (473)
.|..|++|+.|+.+..||+.-...+.+.+..|...+..+++.++ ++++|+.||++.||--. ......++..+
T Consensus 618 ~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L 697 (733)
T KOG0650|consen 618 NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRL 697 (733)
T ss_pred CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeec
Confidence 99999999999999999999877788888999999999988765 79999999999998432 22335678889
Q ss_pred cCCCCc----eeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 407 TGHTGP----VKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 407 ~~h~~~----V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
.+|... |..+.|+|... .|+++|.||+|++|.
T Consensus 698 ~gH~~~~~~gVLd~~wHP~qp-------------WLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 698 RGHEKTNDLGVLDTIWHPRQP-------------WLFSAGADGTIRLFT 733 (733)
T ss_pred cCceeecccceEeecccCCCc-------------eEEecCCCceEEeeC
Confidence 999765 89999999998 899999999999993
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.6e-25 Score=184.92 Aligned_cols=254 Identities=14% Similarity=0.200 Sum_probs=196.1
Q ss_pred ccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCC
Q 012007 158 KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA 237 (473)
Q Consensus 158 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (473)
.+|..-|.++.|...|+++|+|+.|++|+|||........... ..+..|.+.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~T----------------------------s~Wrah~~S 61 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCT----------------------------SSWRAHDGS 61 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEe----------------------------eeEEecCCc
Confidence 4588999999999999999999999999999975543221111 122349999
Q ss_pred eeEEEEcC--CCCEEEEEeCCCCEEEEEcC---------CCeeeEEeecCCCceeEEEEcCCC---EEEEEeCCCcEEEE
Q 012007 238 VSCLSLNA--EQGLLYSGSWDKTLKVWRIS---------DCKCLESINAHDDAINSVVAGFDS---LVFTGSADGTVKVW 303 (473)
Q Consensus 238 v~~l~~~~--~~~~l~s~s~dg~v~vwd~~---------~~~~~~~~~~~~~~v~~l~~~~~~---~l~s~~~dg~i~vw 303 (473)
|..+.|.+ -|+.+++++.|+++.||.-. ......++......|+.+.|.|.. .+++++.||.+|||
T Consensus 62 i~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIY 141 (361)
T KOG2445|consen 62 IWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIY 141 (361)
T ss_pred EEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEE
Confidence 99999976 58999999999999999751 122345666778899999999875 79999999999999
Q ss_pred eCcccCCCcceeeeeeec-------cCCccEEEEEEccC---CCEEEEeCCC-----CcEEEEecCCc---ccccceeec
Q 012007 304 RRELQGKGTKHCLAQVLL-------KHENAVTALAVNQE---SAVVYCGSSD-----GLVNFWECEKH---LSHGGVLRG 365 (473)
Q Consensus 304 d~~~~~~~~~~~~~~~~~-------~~~~~v~~l~~~~~---~~~l~~~~~d-----g~i~iwd~~~~---~~~~~~~~~ 365 (473)
+.-.........+...+. .+.....|+.|+|. ..+|++|+.+ +.++||..... ......+.+
T Consensus 142 EA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 142 EAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred ecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 876443333444433333 56778899999984 4678888776 57899976542 233345668
Q ss_pred CcceEEEEEec------CCEEEEEeCCCcEEEEecCCC-----------------CceeEEEEecCCCCceeEEEEecCC
Q 012007 366 HKMAVLCLAAA------GNLVFSGSADRNICLWRREES-----------------GAHSCLAVLTGHTGPVKCLAVEEDR 422 (473)
Q Consensus 366 ~~~~v~~~~~~------~~~l~s~~~dg~i~iwd~~~~-----------------~~~~~~~~~~~h~~~V~~l~~~~~~ 422 (473)
|..+|..+++. -.+||+++.|| |+||.+... -..+.+..+.+|++.|..+.|+-.|
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG 300 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence 99999877764 24799999999 999998731 1235567788999999999999999
Q ss_pred CCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 423 DHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 423 ~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
. +|++.|.||.||+|+..
T Consensus 301 t-------------iLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 301 T-------------ILSSTGDDGCVRLWKAN 318 (361)
T ss_pred e-------------EEeecCCCceeeehhhh
Confidence 8 99999999999999865
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-25 Score=197.07 Aligned_cols=249 Identities=16% Similarity=0.205 Sum_probs=202.0
Q ss_pred ccccceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEE
Q 012007 111 SCNGLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIR 186 (473)
Q Consensus 111 ~~~~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~ 186 (473)
.++.++.++.||...|+.+.++ ...+++++.|..|+||... ........|.++|+.+..+|.|.||++++.||...
T Consensus 249 ~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~ 328 (506)
T KOG0289|consen 249 PSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWA 328 (506)
T ss_pred chhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEE
Confidence 4567889999999999998876 5579999999999999854 55667788999999999999999999999999999
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD 266 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~ 266 (473)
+.|+.++......... ...-.+++.+|+|||.+|.+|..|+.|+|||+.+
T Consensus 329 Fsd~~~g~~lt~vs~~------------------------------~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 329 FSDISSGSQLTVVSDE------------------------------TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred EEEccCCcEEEEEeec------------------------------cccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 9999988754433211 0123489999999999999999999999999999
Q ss_pred CeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC
Q 012007 267 CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD 345 (473)
Q Consensus 267 ~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d 345 (473)
+..+..|.+|.++|..+.|+.+| ++++++.|+.|++||+|... ............+.++.|.+.|.+|+.++.|
T Consensus 379 ~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~-----n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~ 453 (506)
T KOG0289|consen 379 QTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK-----NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD 453 (506)
T ss_pred ccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc-----ccceeeccccccceeEEEcCCCCeEEeecce
Confidence 99999999999999999999999 88999999999999998433 2222233334479999999999999999887
Q ss_pred CcEEEEecCC-cccccceeecCcceEEEEEec--CCEEEEEeCCCcEEEEec
Q 012007 346 GLVNFWECEK-HLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRR 394 (473)
Q Consensus 346 g~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~ 394 (473)
=+|++++-.+ .......+..|.+...++.+. ..++++++.|..++++.+
T Consensus 454 l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 454 LQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 7777776433 233334455566666666654 779999999999888754
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=207.89 Aligned_cols=328 Identities=20% Similarity=0.285 Sum_probs=241.6
Q ss_pred cceeeeeeecccEEEEEec---C--CEEEEeeCCCcEEEeeCC--c------------------------cc-------c
Q 012007 114 GLIGSIVRKEGHIYSLAAS---G--DLLYTGSDSKNIRVWKNL--K------------------------EF-------S 155 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~---g--~~l~tg~~dg~i~vwd~~--~------------------------~~-------~ 155 (473)
..+..|.||.+.|.+++|. + -+||+++.|..||||.+. . .+ .
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea 261 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA 261 (764)
T ss_pred eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh
Confidence 4578899999999999985 2 389999999999999521 0 00 1
Q ss_pred ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC--eeeEEeeccccc-cceeEeecCCCcc--eE---------
Q 012007 156 GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKN--ASVHKRVGSLPT-FKDYVKSSVNPKN--YV--------- 221 (473)
Q Consensus 156 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~--~~--------- 221 (473)
.+.+|...|.++.|+|.+..|++++.|.++.+|.-+... -....+++.... ...+.....++.. ++
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 245899999999999999999999999999999887653 333344443331 1112222222221 11
Q ss_pred EEeec------ceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC----CeeeEEeecCCCceeEEEEcC-CCE
Q 012007 222 EVRRN------RSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD----CKCLESINAHDDAINSVVAGF-DSL 290 (473)
Q Consensus 222 ~~~~~------~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~----~~~~~~~~~~~~~v~~l~~~~-~~~ 290 (473)
..... .....-||.+.|+.++|+|.|.+|++.+.|.+-+++---. ...+..-+.|...++|+.+-+ +-.
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 11111 1223347999999999999999999999999999986531 122333456888999999988 558
Q ss_pred EEEEeCCCcEEEEeCcc-------------------------------------------cCCC----------------
Q 012007 291 VFTGSADGTVKVWRREL-------------------------------------------QGKG---------------- 311 (473)
Q Consensus 291 l~s~~~dg~i~vwd~~~-------------------------------------------~~~~---------------- 311 (473)
+++|.....+|+|+... ++..
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 89999999999996420 0000
Q ss_pred -----------cceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC-----cEEEEecCCcccccceeecCcceEEEE--
Q 012007 312 -----------TKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG-----LVNFWECEKHLSHGGVLRGHKMAVLCL-- 373 (473)
Q Consensus 312 -----------~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~v~~~-- 373 (473)
........+.+|...|.+++.+|+++++|+++... .|++|+..+..+. +.+.+|...|+.+
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~-~~L~~HsLTVT~l~F 580 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV-QELEGHSLTVTRLAF 580 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh-heecccceEEEEEEE
Confidence 00011234678999999999999999999998654 5899998875444 4788999988655
Q ss_pred EecCCEEEEEeCCCcEEEEecCCCCc-eeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 374 AAAGNLVFSGSADRNICLWRREESGA-HSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 374 ~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
++||++|++.+.|+++.+|....... .......+.|+.-|.+..|+|++. +|+|+|.|++|+||..
T Consensus 581 Spdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~-------------~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 581 SPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK-------------YFATASRDKKVKVWEE 647 (764)
T ss_pred CCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccc-------------eeEEecCCceEEEEec
Confidence 56799999999999999999865321 122445788999999999999998 8999999999999999
Q ss_pred CCC
Q 012007 453 SEH 455 (473)
Q Consensus 453 ~~~ 455 (473)
.+.
T Consensus 648 ~~~ 650 (764)
T KOG1063|consen 648 PDL 650 (764)
T ss_pred cCc
Confidence 877
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=199.74 Aligned_cols=273 Identities=20% Similarity=0.323 Sum_probs=210.4
Q ss_pred EeeCC-CcEEEeeCCcc--ccccccC-cccEEEEEEeCCCCEEEEEeC-CCeEEEEeCCCCCeeeEEeeccccccceeEe
Q 012007 138 TGSDS-KNIRVWKNLKE--FSGFKSN-SGLVKAIIISGDSNKIFTGHQ-DGKIRIWKVSRKNASVHKRVGSLPTFKDYVK 212 (473)
Q Consensus 138 tg~~d-g~i~vwd~~~~--~~~~~~h-~~~V~~l~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 212 (473)
+++.| .++.+||+... +..+++. ...-.++..- .+.|++++.. -..|.+|.+..........
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~------------ 78 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYI------------ 78 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhc------------
Confidence 33434 45999997643 3344433 1111111111 2347776654 3578999987665433111
Q ss_pred ecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EE
Q 012007 213 SSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LV 291 (473)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l 291 (473)
--.+.|.|++-+|+|.+|+.|+..|.|++|.+.+|..+..+.+|-..|+|+.|+.|+ +|
T Consensus 79 --------------------v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~i 138 (476)
T KOG0646|consen 79 --------------------VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHI 138 (476)
T ss_pred --------------------ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEE
Confidence 155789999999999999999899999999999999999999999999999999988 99
Q ss_pred EEEeCCCcEEEEeCccc---CCCcceeeeeeeccCCccEEEEEEccCC--CEEEEeCCCCcEEEEecCCcccccceeecC
Q 012007 292 FTGSADGTVKVWRRELQ---GKGTKHCLAQVLLKHENAVTALAVNQES--AVVYCGSSDGLVNFWECEKHLSHGGVLRGH 366 (473)
Q Consensus 292 ~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 366 (473)
++|+.||.|.+|.+..- .......+...+..|.-+|+++...+.+ .+|++++.|.++++||+..+..+.......
T Consensus 139 iTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~ 218 (476)
T KOG0646|consen 139 ITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS 218 (476)
T ss_pred EecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC
Confidence 99999999999986421 1112344567788999999999988754 689999999999999999887776666666
Q ss_pred cceEEEEEecCCEEEEEeCCCcEEEEecCCCC-------------ceeEEEEecCCCC--ceeEEEEecCCCCCcccccC
Q 012007 367 KMAVLCLAAAGNLVFSGSADRNICLWRREESG-------------AHSCLAVLTGHTG--PVKCLAVEEDRDHDHEYHQK 431 (473)
Q Consensus 367 ~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------------~~~~~~~~~~h~~--~V~~l~~~~~~~~~~~~~~~ 431 (473)
....+.++|.+..+++|+.+|.|.+.++.... ....+..+.||.+ .|+|++++-|+.
T Consensus 219 si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-------- 290 (476)
T KOG0646|consen 219 SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-------- 290 (476)
T ss_pred cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc--------
Confidence 66667777889999999999999998876422 1234667889988 999999999999
Q ss_pred CCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 432 GDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 432 ~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
+|++|+.||.|+|||+.+.+
T Consensus 291 -----lLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 291 -----LLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred -----EEEeeCCCCCEEEEecchHH
Confidence 99999999999999998754
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=206.96 Aligned_cols=241 Identities=21% Similarity=0.317 Sum_probs=200.1
Q ss_pred ceeeeeee-cccEEEEEec--CCEEEEeeCCCcEEEeeCC--cccccccc-CcccEEEEEEeCCCCEEEEEeCCCeEEEE
Q 012007 115 LIGSIVRK-EGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKS-NSGLVKAIIISGDSNKIFTGHQDGKIRIW 188 (473)
Q Consensus 115 ~~~~l~~h-~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~-h~~~V~~l~~s~~~~~l~s~~~dg~i~vw 188 (473)
.+..|..- +..|+++.++ |.+||+|..+|.|.|||.. +.+..+.+ |...|-+++|. +..+.+|+.|+.|..+
T Consensus 208 ~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~ 285 (484)
T KOG0305|consen 208 SVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNH 285 (484)
T ss_pred ceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEE
Confidence 34444433 7889998876 9999999999999999955 66777787 99999999997 5589999999999999
Q ss_pred eCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe
Q 012007 189 KVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK 268 (473)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~ 268 (473)
|+...+.... . ..+|...|..++|++|+.+|++|+.|+.+.|||....+
T Consensus 286 dvR~~~~~~~-~------------------------------~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~ 334 (484)
T KOG0305|consen 286 DVRISQHVVS-T------------------------------LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE 334 (484)
T ss_pred EEecchhhhh-h------------------------------hhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc
Confidence 9987654333 1 12499999999999999999999999999999998889
Q ss_pred eeEEeecCCCceeEEEEcCCC--EEEEEe--CCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEE--e
Q 012007 269 CLESINAHDDAINSVVAGFDS--LVFTGS--ADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC--G 342 (473)
Q Consensus 269 ~~~~~~~~~~~v~~l~~~~~~--~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~--~ 342 (473)
++..+..|..+|.+++|+|-. +||+|+ .|+.|++||...+.. .....-...|..|.|++..+.|++ |
T Consensus 335 p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~-------i~~vdtgsQVcsL~Wsk~~kEi~sthG 407 (484)
T KOG0305|consen 335 PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR-------IDSVDTGSQVCSLIWSKKYKELLSTHG 407 (484)
T ss_pred ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE-------ecccccCCceeeEEEcCCCCEEEEecC
Confidence 999999999999999999864 888764 599999999974321 122334678999999998866665 4
Q ss_pred CCCCcEEEEecCCcccccceeecCcceEEEE--EecCCEEEEEeCCCcEEEEecCC
Q 012007 343 SSDGLVNFWECEKHLSHGGVLRGHKMAVLCL--AAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 343 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
..++.|.||+..+ ......+.+|...|+.+ +|||..+++|+.|.++++|++-.
T Consensus 408 ~s~n~i~lw~~ps-~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 408 YSENQITLWKYPS-MKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CCCCcEEEEeccc-cceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 5678999999988 45557888999999765 57899999999999999999877
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-26 Score=215.35 Aligned_cols=280 Identities=17% Similarity=0.212 Sum_probs=210.0
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCCcc------ccccccC---cccEEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCeee
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNLKE------FSGFKSN---SGLVKAIIISG-DSNKIFTGHQDGKIRIWKVSRKNASV 197 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~~~------~~~~~~h---~~~V~~l~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~ 197 (473)
++..+-..|+.++. ..++||..... ...++.. .-.+..|.|.. +.++|||++..|.|.+||+.......
T Consensus 46 s~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk 124 (839)
T KOG0269|consen 46 SVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNK 124 (839)
T ss_pred eecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccccch
Confidence 34455556777765 46778753311 1111111 12355677753 45799999999999999998631100
Q ss_pred EEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEeecC
Q 012007 198 HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINAH 276 (473)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 276 (473)
....+..|...+.++.|++ ...+|++|+.||+|++||++..+...++.+.
T Consensus 125 -----------------------------~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~n 175 (839)
T KOG0269|consen 125 -----------------------------LLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSN 175 (839)
T ss_pred -----------------------------hhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccccc
Confidence 0011124999999999998 5679999999999999999999999999989
Q ss_pred CCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC
Q 012007 277 DDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 277 ~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 354 (473)
...|..+.|+|.. .++++...|.+++||++ ........+..|.++|.++.|+|++.+||+|+.|+.|+|||..
T Consensus 176 SESiRDV~fsp~~~~~F~s~~dsG~lqlWDlR-----qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t 250 (839)
T KOG0269|consen 176 SESIRDVKFSPGYGNKFASIHDSGYLQLWDLR-----QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMT 250 (839)
T ss_pred chhhhceeeccCCCceEEEecCCceEEEeecc-----CchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEecc
Confidence 9999999998874 89999999999999998 4444567788999999999999999999999999999999998
Q ss_pred CcccccceeecCcceEEEEE--ec-CCEEEEEe--CCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccc
Q 012007 355 KHLSHGGVLRGHKMAVLCLA--AA-GNLVFSGS--ADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYH 429 (473)
Q Consensus 355 ~~~~~~~~~~~~~~~v~~~~--~~-~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~ 429 (473)
..............++.++. |. ..+|++++ .|-.|+|||++.. .-+..++..|...++.++|......
T Consensus 251 ~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP--YIP~~t~~eH~~~vt~i~W~~~d~~----- 323 (839)
T KOG0269|consen 251 DSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP--YIPYATFLEHTDSVTGIAWDSGDRI----- 323 (839)
T ss_pred CCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc--cccceeeeccCccccceeccCCCce-----
Confidence 64433222222333454554 44 45677775 4778999999874 6778889999999999999885443
Q ss_pred cCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 430 QKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 430 ~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
.|.+++.||+|..-.+.+..
T Consensus 324 -------~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 324 -------NLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred -------eeEeecCccHHHHhhhhccc
Confidence 79999999998776665543
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=206.54 Aligned_cols=301 Identities=19% Similarity=0.306 Sum_probs=234.9
Q ss_pred cccceeeeeeecccEEEEEecC--CEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCE-EEEEeCCCeEE
Q 012007 112 CNGLIGSIVRKEGHIYSLAASG--DLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNK-IFTGHQDGKIR 186 (473)
Q Consensus 112 ~~~~~~~l~~h~~~V~~~~~~g--~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~-l~s~~~dg~i~ 186 (473)
.+.++-++.++...|+++.+.. +.+|.|..+|+|.|+++. +.+..++...+.|+.+.|..||+. |++|+..|.+.
T Consensus 191 t~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~ 270 (910)
T KOG1539|consen 191 TGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMA 270 (910)
T ss_pred cCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEE
Confidence 3567888999999999998874 589999999999999965 667777755699999999999965 66777779999
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD 266 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~ 266 (473)
+||++..+....... .|.+.|....|.+....+++++.|..+++|=..+
T Consensus 271 ~wDLe~kkl~~v~~n-------------------------------ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~ 319 (910)
T KOG1539|consen 271 FWDLEKKKLINVTRN-------------------------------AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDS 319 (910)
T ss_pred EEEcCCCeeeeeeec-------------------------------cccCCcccceecCCCceEeeccCCCceeEEEeeC
Confidence 999998876544432 2888999999999999999999999999885543
Q ss_pred --C--eeeEEeecCCCceeEEEEcCC-C-EEEEEeCCCcEEEEeCccc--------------------------------
Q 012007 267 --C--KCLESINAHDDAINSVVAGFD-S-LVFTGSADGTVKVWRRELQ-------------------------------- 308 (473)
Q Consensus 267 --~--~~~~~~~~~~~~v~~l~~~~~-~-~l~s~~~dg~i~vwd~~~~-------------------------------- 308 (473)
| +.++.-.+|..+..|+.+... + .+.+++.|++++.+++...
T Consensus 320 ~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~ 399 (910)
T KOG1539|consen 320 GDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIV 399 (910)
T ss_pred CCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcce
Confidence 3 456666789999999988633 3 6778888887777754210
Q ss_pred ---------------------------------CCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCC
Q 012007 309 ---------------------------------GKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEK 355 (473)
Q Consensus 309 ---------------------------------~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~ 355 (473)
..+........+......+++++.++-|++.+.|.+.|.|-+|+++.
T Consensus 400 ~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS 479 (910)
T KOG1539|consen 400 EFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS 479 (910)
T ss_pred eeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEccc
Confidence 00000000001112336789999999999999999999999999998
Q ss_pred cccccce--eecCcceEEEEEec--CCEEEEEeCCCcEEEEecCCCC---------------------------------
Q 012007 356 HLSHGGV--LRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREESG--------------------------------- 398 (473)
Q Consensus 356 ~~~~~~~--~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~--------------------------------- 398 (473)
+...... ...|..+|+.++.| ++.+++++.+|.+++||.....
T Consensus 480 Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~ 559 (910)
T KOG1539|consen 480 GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIR 559 (910)
T ss_pred CeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEE
Confidence 7655433 35899999999988 6679999999999999987531
Q ss_pred -----ceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 399 -----AHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 399 -----~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
..+.++.+.||.+.|++++|+||++ .|++++.|++|++||+.++.
T Consensus 560 vvD~~t~kvvR~f~gh~nritd~~FS~Dgr-------------WlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 560 VVDVVTRKVVREFWGHGNRITDMTFSPDGR-------------WLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred EEEchhhhhhHHhhccccceeeeEeCCCCc-------------EEEEeecCCcEEEEeccCcc
Confidence 0112345678999999999999999 89999999999999999875
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.6e-26 Score=210.44 Aligned_cols=242 Identities=24% Similarity=0.392 Sum_probs=204.5
Q ss_pred ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeE
Q 012007 152 KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231 (473)
Q Consensus 152 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (473)
+..+.+.+|...|..+++.++. .+++++.||++++|+-..++........
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~----------------------------- 54 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFE----------------------------- 54 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecc-----------------------------
Confidence 3446788999999999987655 8999999999999998666544322221
Q ss_pred eeccCCeeE-EEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccC
Q 012007 232 IRHYDAVSC-LSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 232 ~~~~~~v~~-l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~ 309 (473)
+|.+.|.+ +++.+ ++..|++|+.|++|.+|.+.+..++..+++|...|.++....++.+++|+.|.++++|...
T Consensus 55 -~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~--- 130 (745)
T KOG0301|consen 55 -GPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG--- 130 (745)
T ss_pred -cCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecch---
Confidence 36666666 77775 5567999999999999999999999999999999999998888899999999999999764
Q ss_pred CCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe-cCCEEEEEeCCCc
Q 012007 310 KGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA-AGNLVFSGSADRN 388 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~ 388 (473)
.+...+.+|...|.+++.-|++ .+++|+.|.+|++|.-. .....+.+|...|..+.. ++..|++++.||.
T Consensus 131 -----~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~---~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~ 201 (745)
T KOG0301|consen 131 -----ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG---TLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGS 201 (745)
T ss_pred -----hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCC---chhhhhccchhheeeeEEecCCCeEeecCCce
Confidence 2345589999999999999988 77899999999999853 344678899999999886 4668999999999
Q ss_pred EEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 389 ICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 389 i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
|++|++.. .++..+.+|+.-|.++....++. .++|+|+|++++||+..
T Consensus 202 Ir~w~~~g----e~l~~~~ghtn~vYsis~~~~~~-------------~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 202 IRLWDLDG----EVLLEMHGHTNFVYSISMALSDG-------------LIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEEEeccC----ceeeeeeccceEEEEEEecCCCC-------------eEEEecCCceEEEeecC
Confidence 99999954 78999999999999999666666 79999999999999987
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-26 Score=201.11 Aligned_cols=243 Identities=19% Similarity=0.301 Sum_probs=195.1
Q ss_pred ccceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEE
Q 012007 113 NGLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIW 188 (473)
Q Consensus 113 ~~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw 188 (473)
..++.+|.|-.|.|.++.++ ++.+++++.|+.+++|++. +...++.+|++.|+++.|......+++|+.|.+|++|
T Consensus 209 ~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~W 288 (459)
T KOG0288|consen 209 SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLW 288 (459)
T ss_pred hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhh
Confidence 45788888888999999886 7899999999999999865 6678999999999999998877779999999999999
Q ss_pred eCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe
Q 012007 189 KVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK 268 (473)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~ 268 (473)
|+....+..... ..+.+..|..+ ...+++|-.|++|++||.++..
T Consensus 289 Dl~k~~C~kt~l---------------------------------~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~ 333 (459)
T KOG0288|consen 289 DLQKAYCSKTVL---------------------------------PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSAD 333 (459)
T ss_pred hhhhhheecccc---------------------------------ccccccceEec--ceeeeecccccceEEEeccCCc
Confidence 998865544333 23344555554 4678889999999999999999
Q ss_pred eeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCc
Q 012007 269 CLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGL 347 (473)
Q Consensus 269 ~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~ 347 (473)
+..+...+. .|+++..++++ .+++++.|.++.+.|++..+. .......-.......+.+.|+|++.|+++|+.||.
T Consensus 334 ~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI--~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgs 410 (459)
T KOG0288|consen 334 KTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI--RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGS 410 (459)
T ss_pred eeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccE--EEEeeccccccccccceeEECCCCceeeeccCCCc
Confidence 999998776 89999999998 788889999999999985432 22221222222344899999999999999999999
Q ss_pred EEEEecCCcccccceeecCcc-eEEEEEec--CCEEEEEeCCCcEEEEe
Q 012007 348 VNFWECEKHLSHGGVLRGHKM-AVLCLAAA--GNLVFSGSADRNICLWR 393 (473)
Q Consensus 348 i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~s~~~dg~i~iwd 393 (473)
|+||++.+++........+.. .|++++|+ |..|++++.++.+.+|.
T Consensus 411 v~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 411 VYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999887655433333333 58877765 89999999999999993
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=219.53 Aligned_cols=271 Identities=21% Similarity=0.279 Sum_probs=204.1
Q ss_pred CcccEEEEEEeCCCCEEEEEe--CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCC
Q 012007 160 NSGLVKAIIISGDSNKIFTGH--QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA 237 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (473)
+...|.+|..+|||..++||+ .||.++||+.+.-..........+ .........|.+.
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l--------------------~k~l~~m~~h~~s 71 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENL--------------------PKHLCTMDDHDGS 71 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhccc--------------------chhheeeccccCc
Confidence 456799999999999999999 899999999754221100000000 0111222349999
Q ss_pred eeEEEEcCCCCEEEEEeCCCCEEEEEcCC------------------CeeeEEeecCCCceeEEEEcCCC-EEEEEeCCC
Q 012007 238 VSCLSLNAEQGLLYSGSWDKTLKVWRISD------------------CKCLESINAHDDAINSVVAGFDS-LVFTGSADG 298 (473)
Q Consensus 238 v~~l~~~~~~~~l~s~s~dg~v~vwd~~~------------------~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg 298 (473)
|+|+.|++||.+||+|+.|+.|.||+... .+++..+.+|...|..++|+|++ ++++++.|+
T Consensus 72 v~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dn 151 (942)
T KOG0973|consen 72 VNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDN 151 (942)
T ss_pred eeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccc
Confidence 99999999999999999999999998762 24677888999999999999988 999999999
Q ss_pred cEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCc--------ceE
Q 012007 299 TVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHK--------MAV 370 (473)
Q Consensus 299 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------~~v 370 (473)
+|.+||.++ . .....+.+|.+.|..+.|.|-|+||++-+.|++|+||++.+.. ......++- ..-
T Consensus 152 sViiwn~~t-----F-~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~-i~k~It~pf~~~~~~T~f~R 224 (942)
T KOG0973|consen 152 SVIIWNAKT-----F-ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG-IEKSITKPFEESPLTTFFLR 224 (942)
T ss_pred eEEEEcccc-----c-eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccce-eeEeeccchhhCCCcceeee
Confidence 999999863 2 5678899999999999999999999999999999999976521 111221111 223
Q ss_pred EEEEecCCEEEEEeC----CCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCC---CcccccCC-CccEEEEEee
Q 012007 371 LCLAAAGNLVFSGSA----DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDH---DHEYHQKG-DQRWTVYSGS 442 (473)
Q Consensus 371 ~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~---~~~~~~~~-~~~~~l~s~s 442 (473)
.+++|||.+|++... -.++.|.+..+ +..-..+.||..++.++.|+|.--. ..+..... ....++|+||
T Consensus 225 lSWSPDG~~las~nA~n~~~~~~~IieR~t---Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS 301 (942)
T KOG0973|consen 225 LSWSPDGHHLASPNAVNGGKSTIAIIERGT---WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS 301 (942)
T ss_pred cccCCCcCeecchhhccCCcceeEEEecCC---ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec
Confidence 678899999998743 34688888866 8888899999999999999984210 00000001 1123799999
Q ss_pred CCCcEEEEEcCCCCCCcc
Q 012007 443 LDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 443 ~Dg~v~iW~i~~~~~~~~ 460 (473)
.|++|.||......|.+.
T Consensus 302 qDrSlSVW~T~~~RPl~v 319 (942)
T KOG0973|consen 302 QDRSLSVWNTALPRPLFV 319 (942)
T ss_pred CCccEEEEecCCCCchhh
Confidence 999999999976655443
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=198.69 Aligned_cols=249 Identities=26% Similarity=0.449 Sum_probs=201.5
Q ss_pred CCEEEEeeC-CCcEEEeeCCcccccc--ccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccce
Q 012007 133 GDLLYTGSD-SKNIRVWKNLKEFSGF--KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKD 209 (473)
Q Consensus 133 g~~l~tg~~-dg~i~vwd~~~~~~~~--~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 209 (473)
+.+++++.. -..|.+|...++.... .--.++|.|++-+|+|.+|+.|+..|.|++|.+.++.......
T Consensus 50 ~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~--------- 120 (476)
T KOG0646|consen 50 NEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS--------- 120 (476)
T ss_pred hhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHH---------
Confidence 456666643 4578999877554332 3356889999999999999999899999999999998655442
Q ss_pred eEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC---------CCeeeEEeecCCCce
Q 012007 210 YVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS---------DCKCLESINAHDDAI 280 (473)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~---------~~~~~~~~~~~~~~v 280 (473)
+|...|+|+.|+.|+.+|++|+.||.|.+|++. +-++++.+..|.-+|
T Consensus 121 -----------------------aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsI 177 (476)
T KOG0646|consen 121 -----------------------AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSI 177 (476)
T ss_pred -----------------------hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCccee
Confidence 499999999999999999999999999999873 346788899999999
Q ss_pred eEEEEcCCC---EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcc
Q 012007 281 NSVVAGFDS---LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHL 357 (473)
Q Consensus 281 ~~l~~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~ 357 (473)
+++...+.+ .+++++.|.++++||+..+. + .........+.+++++|.++.+++|+.+|.|.+.++.+..
T Consensus 178 TDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~------L-Llti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~ 250 (476)
T KOG0646|consen 178 TDLQIGSGGTNARLYTASEDRTIKLWDLSLGV------L-LLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLS 250 (476)
T ss_pred EEEEecCCCccceEEEecCCceEEEEEeccce------e-eEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCC
Confidence 999988775 99999999999999997432 1 2222346789999999999999999999999998875321
Q ss_pred ---------------cccceeecCcc--eEEEEE--ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEE
Q 012007 358 ---------------SHGGVLRGHKM--AVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAV 418 (473)
Q Consensus 358 ---------------~~~~~~~~~~~--~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~ 418 (473)
.....+.||.. .|+|++ .||.+|++|+.||.|+|||+.+ .++++++....++|+.+.+
T Consensus 251 ~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S---~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 251 GQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS---KQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred cccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch---HHHHHHHhhhccccceeEe
Confidence 11234567877 777765 6799999999999999999998 6788887767889999999
Q ss_pred ecCCC
Q 012007 419 EEDRD 423 (473)
Q Consensus 419 ~~~~~ 423 (473)
.|-.+
T Consensus 328 ~~~~~ 332 (476)
T KOG0646|consen 328 NPLER 332 (476)
T ss_pred ecccc
Confidence 77544
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-25 Score=185.55 Aligned_cols=273 Identities=18% Similarity=0.278 Sum_probs=202.2
Q ss_pred eecccEEEEEec--CCEEEEeeCCCcEEEeeCCc------cccccccCcccEEEEEEeC--CCCEEEEEeCCCeEEEEeC
Q 012007 121 RKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLK------EFSGFKSNSGLVKAIIISG--DSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 121 ~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~------~~~~~~~h~~~V~~l~~s~--~~~~l~s~~~dg~i~vwd~ 190 (473)
+|.+-|.++++| |+.+|||+.|++|+|||..+ .-...+.|.+.|..|.|.+ -|+.+|+|+.|+++.||.-
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 577778888876 99999999999999999543 3445788999999999954 4789999999999999986
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC--CCCEEEEEeCCCCEEEEEcCCC-
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA--EQGLLYSGSWDKTLKVWRISDC- 267 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~s~s~dg~v~vwd~~~~- 267 (473)
.......... .-.+...+......|+.+.|.| -|-.|++++.||+|+||+..+.
T Consensus 91 ~~~~~~~~~~-----------------------~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~ 147 (361)
T KOG2445|consen 91 QEKSEEAHGR-----------------------RWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM 147 (361)
T ss_pred cccccccccc-----------------------eeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcc
Confidence 4222111000 0011122334678899999999 5779999999999999986543
Q ss_pred -----eeeEEee-------cCCCceeEEEEcCCC----EEEEEeCC-----CcEEEEeCcccCCCcceeeeeeeccCCcc
Q 012007 268 -----KCLESIN-------AHDDAINSVVAGFDS----LVFTGSAD-----GTVKVWRRELQGKGTKHCLAQVLLKHENA 326 (473)
Q Consensus 268 -----~~~~~~~-------~~~~~v~~l~~~~~~----~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
....+++ .+.....|+.|++.. +|+.|+.+ +.++||...... .+...+..+.+|..+
T Consensus 148 nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~--rKw~kva~L~d~~dp 225 (361)
T KOG2445|consen 148 NLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG--RKWLKVAELPDHTDP 225 (361)
T ss_pred ccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc--ceeeeehhcCCCCCc
Confidence 2333333 466778899998764 67777765 589999876433 355566778899999
Q ss_pred EEEEEEccCC----CEEEEeCCCCcEEEEecCCc-------------------ccccceeecCcceEEEEEec--CCEEE
Q 012007 327 VTALAVNQES----AVVYCGSSDGLVNFWECEKH-------------------LSHGGVLRGHKMAVLCLAAA--GNLVF 381 (473)
Q Consensus 327 v~~l~~~~~~----~~l~~~~~dg~i~iwd~~~~-------------------~~~~~~~~~~~~~v~~~~~~--~~~l~ 381 (473)
|++|+|.|+- .+||+++.|| |+||.++.. ......+.+|.+.|..+.++ |..|+
T Consensus 226 I~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLs 304 (361)
T KOG2445|consen 226 IRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILS 304 (361)
T ss_pred ceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEe
Confidence 9999999953 6799999999 999998631 11223456899999888877 99999
Q ss_pred EEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEec
Q 012007 382 SGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEE 420 (473)
Q Consensus 382 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~ 420 (473)
+.+.||.|++|...-...+.|+..+... +.++...|.+
T Consensus 305 StGdDG~VRLWkany~n~~kC~sv~~~e-~~~~~~~~~~ 342 (361)
T KOG2445|consen 305 STGDDGCVRLWKANYNNLWKCTSVLKAE-GSVTKPDFSQ 342 (361)
T ss_pred ecCCCceeeehhhhhhhhheeeeEEecc-CCCCCccccc
Confidence 9999999999998766667777777653 3344444443
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=190.76 Aligned_cols=266 Identities=20% Similarity=0.305 Sum_probs=192.1
Q ss_pred ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeecc
Q 012007 156 GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY 235 (473)
Q Consensus 156 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (473)
.+..|++++.+.+|++||.++++|+.|..|+|.|++..-... ....-.+... . -...-...+..|.
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks-~~~em~~~~~-------q------a~hPvIRTlYDH~ 172 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS-KPKEMISGDT-------Q------ARHPVIRTLYDHV 172 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc-chhhhccCCc-------c------cCCceEeehhhcc
Confidence 356799999999999999999999999999999997321100 0000000000 0 0000112334699
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee--cCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCc
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN--AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~ 312 (473)
+.|+++.|+|....|++|+.|++|+++|+......+.++ ....+|.++.|+|.| +|++|..-..+++||+++
T Consensus 173 devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T----- 247 (430)
T KOG0640|consen 173 DEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT----- 247 (430)
T ss_pred CcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccc-----
Confidence 999999999999999999999999999997543332222 245689999999998 888999999999999983
Q ss_pred ceeeee--eeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEE---EEecCCEEEEEeCCC
Q 012007 313 KHCLAQ--VLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLC---LAAAGNLVFSGSADR 387 (473)
Q Consensus 313 ~~~~~~--~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~---~~~~~~~l~s~~~dg 387 (473)
.++.+. .-..|...|+++.+++.+++.++++.||.|++||--.......+-..|.+.-.| |.-+++|+++.+.|.
T Consensus 248 ~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS 327 (430)
T KOG0640|consen 248 YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDS 327 (430)
T ss_pred eeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcc
Confidence 333332 345789999999999999999999999999999987777766667777765433 345799999999999
Q ss_pred cEEEEecCCCCceeEEEEecCC--CC---ceeEEEEecCCCCCcccccCCCccEEEEEee-CCCcEEEEEcCCCC
Q 012007 388 NICLWRREESGAHSCLAVLTGH--TG---PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS-LDKSVKVWRVSEHA 456 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~~~~h--~~---~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s-~Dg~v~iW~i~~~~ 456 (473)
.+++|.+.+ ..++..+.|- ++ --+...|+.... +++.-. ..+.+.-||-.+..
T Consensus 328 ~vkLWEi~t---~R~l~~YtGAg~tgrq~~rtqAvFNhtEd-------------yVl~pDEas~slcsWdaRtad 386 (430)
T KOG0640|consen 328 TVKLWEIST---GRMLKEYTGAGTTGRQKHRTQAVFNHTED-------------YVLFPDEASNSLCSWDARTAD 386 (430)
T ss_pred eeeeeeecC---CceEEEEecCCcccchhhhhhhhhcCccc-------------eEEccccccCceeeccccchh
Confidence 999999998 5677776653 11 123444555444 333332 34567777776554
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=193.18 Aligned_cols=306 Identities=22% Similarity=0.318 Sum_probs=217.5
Q ss_pred EEEecCCEEEEeeCCC-----cEEEeeCCccccccccCc----ccEEEEEEeC-------CCCEEEEEeCCCeEEEEeCC
Q 012007 128 SLAASGDLLYTGSDSK-----NIRVWKNLKEFSGFKSNS----GLVKAIIISG-------DSNKIFTGHQDGKIRIWKVS 191 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg-----~i~vwd~~~~~~~~~~h~----~~V~~l~~s~-------~~~~l~s~~~dg~i~vwd~~ 191 (473)
-+.++..+|++|-.+. .|+||+-.. -.-+-.|. ..-.|++|.. -|+|+|.|..|..|.|||+.
T Consensus 132 ~V~psDnlIl~ar~eddvs~LEvYVyn~~e-~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLD 210 (463)
T KOG0270|consen 132 QVKPSDNLILCARNEDDVSYLEVYVYNEEE-ENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLD 210 (463)
T ss_pred eeccCCcEEEEeeccCCceEEEEEEEcCCC-cceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccc
Confidence 3556667777664432 344444332 11222232 3346777733 36899999999999999987
Q ss_pred CCCeee-EEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC-CCEEEEEeCCCCEEEEEcCCCee
Q 012007 192 RKNASV-HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 192 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
-..... ...++.... ........+.....+|+++|..|.|+.. .+.|++|+.|.+|++||+.++++
T Consensus 211 I~d~v~P~~~LGs~~s------------k~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p 278 (463)
T KOG0270|consen 211 IVDAVLPCVTLGSKAS------------KKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKP 278 (463)
T ss_pred cccccccceeechhhh------------hhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCc
Confidence 443221 111111000 0000001112223369999999999874 56899999999999999999999
Q ss_pred eEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC-CEEEEeCCCC
Q 012007 270 LESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES-AVVYCGSSDG 346 (473)
Q Consensus 270 ~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg 346 (473)
..++..|.+.|.++.|++.. .|++|+.|++|.+.|.|.... ....-...+.|..++|.|.. ..++++..||
T Consensus 279 ~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~------s~~~wk~~g~VEkv~w~~~se~~f~~~tddG 352 (463)
T KOG0270|consen 279 KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN------SGKEWKFDGEVEKVAWDPHSENSFFVSTDDG 352 (463)
T ss_pred ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc------cCceEEeccceEEEEecCCCceeEEEecCCc
Confidence 99999999999999999886 899999999999999984221 11122235789999999955 5678889999
Q ss_pred cEEEEecCCcccccceeecCcceEEEEEec---CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 347 LVNFWECEKHLSHGGVLRGHKMAVLCLAAA---GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 347 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
+|+-+|++....+...+..|...|.+++.+ ..+|++++.|+.|++|++..... ..+....-.-+...|.++.|+..
T Consensus 353 ~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~~~~~~~rl~c~~~~~~~a 431 (463)
T KOG0270|consen 353 TVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKEHSFKLGRLHCFALDPDVA 431 (463)
T ss_pred eEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-cccccccccccceeecccCCCcc
Confidence 999999999878888999999999999876 67999999999999999986322 22222112233467778888766
Q ss_pred CCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCCCCc
Q 012007 424 HDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGLHSP 465 (473)
Q Consensus 424 ~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~~~~ 465 (473)
. .++.||..+.++|||+....+..+.+..+
T Consensus 432 ~------------~la~GG~k~~~~vwd~~~~~~V~kaF~~~ 461 (463)
T KOG0270|consen 432 F------------TLAFGGEKAVLRVWDIFTNSPVRKAFGSR 461 (463)
T ss_pred e------------EEEecCccceEEEeecccChhHHHhhccc
Confidence 3 78999999999999999887776665543
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-24 Score=180.03 Aligned_cols=244 Identities=17% Similarity=0.255 Sum_probs=184.2
Q ss_pred CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 160 NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
....|..|.|+|.++.|+.++.||.+++||+......... .|..++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~---------------------------------~~~~plL 58 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF---------------------------------KHGAPLL 58 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe---------------------------------ecCCcee
Confidence 4578999999999999999999999999999877543333 3999999
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC-CEEEEEeCCCcEEEEeCcccCCCcceeeee
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVWRRELQGKGTKHCLAQ 318 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 318 (473)
+++|.+ ...+++|+.||.|+.+|+.++... .+..|..+|.||...+. +.+++|+.|++|++||.+... ...
T Consensus 59 ~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~------~~~ 130 (323)
T KOG1036|consen 59 DCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV------VVG 130 (323)
T ss_pred eeeccC-CceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc------ccc
Confidence 999987 467899999999999999887654 45679999999998865 599999999999999998311 111
Q ss_pred eeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccccee-ecCcceE--EEEEecCCEEEEEeCCCcEEEEecC
Q 012007 319 VLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVL-RGHKMAV--LCLAAAGNLVFSGSADRNICLWRRE 395 (473)
Q Consensus 319 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~ 395 (473)
.......|.++... ++.|++|+.|..|.+||+++.....+.. ..-+..+ .++-|++.-+++++-||.|.+=.++
T Consensus 131 -~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d 207 (323)
T KOG1036|consen 131 -TFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFD 207 (323)
T ss_pred -ccccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccC
Confidence 12233477777765 6789999999999999999754443111 1122233 3444677888999999998876665
Q ss_pred CC-CceeEEEEecCCC---------CceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 396 ES-GAHSCLAVLTGHT---------GPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 396 ~~-~~~~~~~~~~~h~---------~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
.. .....-..++.|. -+|++|+|+|-.. .|+|||.||.|.+||+...+...+
T Consensus 208 ~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-------------tfaTgGsDG~V~~Wd~~~rKrl~q 269 (323)
T KOG1036|consen 208 DSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-------------TFATGGSDGIVNIWDLFNRKRLKQ 269 (323)
T ss_pred CchHHhhhceeEEeeecccCCceEEEEeceeEeccccc-------------eEEecCCCceEEEccCcchhhhhh
Confidence 53 1112233444452 2799999999876 799999999999999998765544
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.2e-25 Score=189.49 Aligned_cols=242 Identities=17% Similarity=0.249 Sum_probs=194.3
Q ss_pred cceeeeeeecccEEEEEecCCEEEEeeCCCcEEEeeCCc-cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q 012007 114 GLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLK-EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSR 192 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~g~~l~tg~~dg~i~vwd~~~-~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~ 192 (473)
..+.++..|.|.|..+..+...++++++|.+|+.|.... .+.++. ....+..|.-+..++.++|||.+ |.|||...
T Consensus 100 ~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~p~~til-g~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R 176 (433)
T KOG0268|consen 100 ECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGPPLHTIL-GKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQR 176 (433)
T ss_pred hhhheeecccCceeeEEecccceEEecCCcceeeeeccCCcceeee-ccccccccccccccccccccCce--eeeccccc
Confidence 457889999999999999999999999999999998553 333333 34557777777777889999875 99999987
Q ss_pred CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC-CCEEEEEeCCCCEEEEEcCCCeeeE
Q 012007 193 KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCKCLE 271 (473)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~ 271 (473)
......... ..+.|.++.|+|. -..|++|+.|+.|.+||++++.+++
T Consensus 177 ~~Pv~smsw--------------------------------G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~ 224 (433)
T KOG0268|consen 177 DNPVSSMSW--------------------------------GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLK 224 (433)
T ss_pred CCccceeec--------------------------------CCCceeEEecCCCcchheeeeccCCceEEEecccCCccc
Confidence 766555443 4567899999994 4577888899999999999999888
Q ss_pred EeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEE
Q 012007 272 SINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350 (473)
Q Consensus 272 ~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~i 350 (473)
.+. -...-+.|+|+|+. .+++++.|..+..||++ .-..+.....+|.++|.++.|+|.|+-+++|+.|.+|+|
T Consensus 225 KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR-----~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRI 298 (433)
T KOG0268|consen 225 KVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMR-----NLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRI 298 (433)
T ss_pred eee-eeccccceecCccccceeeccccccceehhhh-----hhcccchhhcccceeEEEeccCCCcchhccccccceEEE
Confidence 765 34456889999976 67889999999999998 445567788899999999999999999999999999999
Q ss_pred EecCCcccccceeecCcceEEEE--EecCCEEEEEeCCCcEEEEecCC
Q 012007 351 WECEKHLSHGGVLRGHKMAVLCL--AAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
|..+.+.............|.|+ +.|.+|+++|+.|+.|++|....
T Consensus 299 f~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 299 FPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred eecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 99876543322222223455555 55799999999999999998764
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-25 Score=208.22 Aligned_cols=229 Identities=17% Similarity=0.241 Sum_probs=187.6
Q ss_pred ecCCEEEEeeCCCcEEEeeCCc-----cccccccCcccEEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCeeeEEeeccc
Q 012007 131 ASGDLLYTGSDSKNIRVWKNLK-----EFSGFKSNSGLVKAIIISGDS-NKIFTGHQDGKIRIWKVSRKNASVHKRVGSL 204 (473)
Q Consensus 131 ~~g~~l~tg~~dg~i~vwd~~~-----~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 204 (473)
.+.++|||++..|.|.+||+.+ .+..|..|+..|+++.|++-. ++|++|+.||.|++||+...+......
T Consensus 98 ~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~---- 173 (839)
T KOG0269|consen 98 LYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR---- 173 (839)
T ss_pred chhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc----
Confidence 4577999999999999999765 355788999999999998754 689999999999999998776443333
Q ss_pred cccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCC-eeeEEeecCCCceeE
Q 012007 205 PTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDC-KCLESINAHDDAINS 282 (473)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~-~~~~~~~~~~~~v~~ 282 (473)
+..+.|..++|+| .+.+|+++...|.+++||++.. ++...+.+|.++|.|
T Consensus 174 ----------------------------~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c 225 (839)
T KOG0269|consen 174 ----------------------------SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLC 225 (839)
T ss_pred ----------------------------ccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEE
Confidence 3567899999999 6789999999999999999864 567788899999999
Q ss_pred EEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCE-EEEeC--CCCcEEEEecCCccc
Q 012007 283 VVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAV-VYCGS--SDGLVNFWECEKHLS 358 (473)
Q Consensus 283 l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~~--~dg~i~iwd~~~~~~ 358 (473)
+.|+|++ +|++|+.|+.|+|||........ ........+|.+++|-|+..+ |++++ .|-.|+|||++....
T Consensus 226 ~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~-----~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI 300 (839)
T KOG0269|consen 226 LNWHPNREWLATGGRDKMVKIWDMTDSRAKP-----KHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI 300 (839)
T ss_pred EeecCCCceeeecCCCccEEEEeccCCCccc-----eeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccc
Confidence 9999987 99999999999999987433211 222233568999999997755 55544 367899999999999
Q ss_pred ccceeecCcceEEEEEecC---CEEEEEeCCCcEEEEecCC
Q 012007 359 HGGVLRGHKMAVLCLAAAG---NLVFSGSADRNICLWRREE 396 (473)
Q Consensus 359 ~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~ 396 (473)
+...+..|...+..+.|++ ..|.+++.||+|..-.+++
T Consensus 301 P~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 301 PYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred cceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence 9999999999999998874 5788999999887655544
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-23 Score=199.10 Aligned_cols=255 Identities=16% Similarity=0.217 Sum_probs=197.2
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCCc---cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccc
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNLK---EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSL 204 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~~---~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 204 (473)
|+.++|++|++++.||.|++|+... .-..+.-+...|.+++.. +++|++|+.+++|.+|.+..++......
T Consensus 20 ~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~---- 93 (933)
T KOG1274|consen 20 CYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILA---- 93 (933)
T ss_pred EEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCccceee----
Confidence 5566799999999999999997542 222333377888888874 4499999999999999998876432111
Q ss_pred cccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEE
Q 012007 205 PTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284 (473)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~ 284 (473)
..+-++.+++|+.+|++++.|+.|-.|++.++.+......+++|+++|.++.
T Consensus 94 ----------------------------Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~ 145 (933)
T KOG1274|consen 94 ----------------------------RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLS 145 (933)
T ss_pred ----------------------------eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeee
Confidence 2566889999999999999999999999999999999999999999999999
Q ss_pred EcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeee-ec-cCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccc
Q 012007 285 AGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQV-LL-KHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGG 361 (473)
Q Consensus 285 ~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~-~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 361 (473)
++|.+ +|++.+.||.|++||+..+........+.. .. .....+..++|+|++..++....|+.|++|+.........
T Consensus 146 ~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~ 225 (933)
T KOG1274|consen 146 YDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFK 225 (933)
T ss_pred EcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehee
Confidence 99998 899999999999999975432111111111 11 1145577899999988888999999999999887544332
Q ss_pred eeecCc---ceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 362 VLRGHK---MAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 362 ~~~~~~---~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
....+. ..++.|+|+|.|||+++.||.|.|||.++. .. ......|.+++|.|+..
T Consensus 226 Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~---~~----~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 226 LRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTH---ER----HEFKRAVCCEAWKPNAN 283 (933)
T ss_pred ecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccc---hh----ccccceeEEEecCCCCC
Confidence 222222 345677888999999999999999999871 11 22346799999999987
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=186.69 Aligned_cols=280 Identities=13% Similarity=0.211 Sum_probs=212.5
Q ss_pred cccEEEEEec--CCEEEEeeCCCcEEEeeCC----ccccccccCcccEEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCe
Q 012007 123 EGHIYSLAAS--GDLLYTGSDSKNIRVWKNL----KEFSGFKSNSGLVKAIIISGDSN-KIFTGHQDGKIRIWKVSRKNA 195 (473)
Q Consensus 123 ~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~----~~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~i~vwd~~~~~~ 195 (473)
.+.|.++.|. ..+|++|+.||+++||.+. ..+..+.--..+|.+.+|.|+|. .+++++.-..++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 4567787766 6699999999999999754 33455555678999999999998 899999999999999998876
Q ss_pred eeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec
Q 012007 196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA 275 (473)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 275 (473)
......... ....+.....++++++|+..+..|.|.+....+++.+..++
T Consensus 293 ~k~~~~~g~-----------------------------e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K- 342 (514)
T KOG2055|consen 293 TKLKPPYGV-----------------------------EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK- 342 (514)
T ss_pred ccccCCCCc-----------------------------ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-
Confidence 554443321 12356678889999999999999999999999999999887
Q ss_pred CCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC
Q 012007 276 HDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 276 ~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 354 (473)
-.+.|..++|+.++ .|++++.+|.|.+||++. ..++........-.-++++.++++.+||+|+..|.|.|||.+
T Consensus 343 ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~-----~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 343 IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQ-----NSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred eccEEeeEEEecCCcEEEEEcCCceEEEEecCC-----cceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccc
Confidence 46789999999887 788888999999999983 333333333333334778888999999999999999999976
Q ss_pred Cc-----ccccceeecCcceEEE--EEecCCEEEEEeC--CCcEEEEecCCCCceeEEEEec---CCCCceeEEEEecCC
Q 012007 355 KH-----LSHGGVLRGHKMAVLC--LAAAGNLVFSGSA--DRNICLWRREESGAHSCLAVLT---GHTGPVKCLAVEEDR 422 (473)
Q Consensus 355 ~~-----~~~~~~~~~~~~~v~~--~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~---~h~~~V~~l~~~~~~ 422 (473)
+. ..+...+..-...|.. |+++.++||.++. +..+++-.+.+ ......+. ..-+.|+|++|+|.+
T Consensus 418 s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS---~TVFsNfP~~n~~vg~vtc~aFSP~s 494 (514)
T KOG2055|consen 418 SCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS---CTVFSNFPTSNTKVGHVTCMAFSPNS 494 (514)
T ss_pred hhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc---eeeeccCCCCCCcccceEEEEecCCC
Confidence 42 2222222233344544 4556888888874 56788887776 23333332 234568999999998
Q ss_pred CCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 423 DHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 423 ~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
. +||.|..+|.|.+|++.
T Consensus 495 G-------------~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 495 G-------------YLAVGNEAGRVHLFKLH 512 (514)
T ss_pred c-------------eEEeecCCCceeeEeec
Confidence 8 89999999999999974
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.7e-23 Score=165.48 Aligned_cols=256 Identities=18% Similarity=0.252 Sum_probs=186.2
Q ss_pred CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 160 NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
.+..|.+++|+|.|.+.+.|+..++++|-....-......... + ..+... .......|.+.|.
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea--~---------~~pp~v------~~kr~khhkgsiy 93 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEA--A---------KQPPSV------LCKRNKHHKGSIY 93 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCccccccc--c---------cCCCeE------EeeeccccCccEE
Confidence 5678999999999999999999999988654321111000000 0 000000 0011124889999
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCCee-----eEEeecCCCceeEEEEcCC----C-EEEEEe-CCCcEEEEeCccc
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKC-----LESINAHDDAINSVVAGFD----S-LVFTGS-ADGTVKVWRRELQ 308 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~-----~~~~~~~~~~v~~l~~~~~----~-~l~s~~-~dg~i~vwd~~~~ 308 (473)
|.+|+|+|.++++|+.|.+|++...+...+ -.++..|.+.|..++|..+ + .|++++ .|..|.+-|...
T Consensus 94 c~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~- 172 (350)
T KOG0641|consen 94 CTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR- 172 (350)
T ss_pred EEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC-
Confidence 999999999999999999999987754332 2467789999999999654 2 455443 355666666542
Q ss_pred CCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccc---eeec-----CcceEEEEEecCCEE
Q 012007 309 GKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGG---VLRG-----HKMAVLCLAAAGNLV 380 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~-----~~~~v~~~~~~~~~l 380 (473)
......+.+|.+-|.++ ++-++-++++|+.|.+|++||++-...... .+.+ ......++.|.|++|
T Consensus 173 -----g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll 246 (350)
T KOG0641|consen 173 -----GQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLL 246 (350)
T ss_pred -----CCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCccee
Confidence 22356778899988877 333678999999999999999975332211 1111 122335566779999
Q ss_pred EEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 381 FSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 381 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
++|-.|....+||++. ...++.+..|...|.|+.|+|... ++++|+.|..|++-|++..
T Consensus 247 ~sg~~dssc~lydirg---~r~iq~f~phsadir~vrfsp~a~-------------yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 247 ASGHADSSCMLYDIRG---GRMIQRFHPHSADIRCVRFSPGAH-------------YLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred eeccCCCceEEEEeeC---CceeeeeCCCccceeEEEeCCCce-------------EEEEecccceEEEeecccc
Confidence 9999999999999998 688999999999999999999877 9999999999999998753
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-23 Score=175.12 Aligned_cols=273 Identities=17% Similarity=0.248 Sum_probs=199.7
Q ss_pred EEEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecc
Q 012007 126 IYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGS 203 (473)
Q Consensus 126 V~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 203 (473)
...|+..|.+||+|+.||.|.|||.. ..-..+.+|..+|.+++|++||+.|+|++.|..|.+||+..+......+
T Consensus 28 ~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir--- 104 (405)
T KOG1273|consen 28 CCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR--- 104 (405)
T ss_pred eEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE---
Confidence 33455569999999999999999965 5566788999999999999999999999999999999999988665554
Q ss_pred ccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC-CCEEEEEeCCCCEEEEEcCCCeeeEEee-cCCC---
Q 012007 204 LPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCKCLESIN-AHDD--- 278 (473)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~--- 278 (473)
..++|+...|+|. .+.+++.-.+..-.+.++..++. ..+. ...+
T Consensus 105 ------------------------------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln 153 (405)
T KOG1273|consen 105 ------------------------------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLN 153 (405)
T ss_pred ------------------------------ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccc
Confidence 6678999999994 34444444555566666654221 1111 1111
Q ss_pred -ceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccC-CccEEEEEEccCCCEEEEeCCCCcEEEEecCC
Q 012007 279 -AINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKH-ENAVTALAVNQESAVVYCGSSDGLVNFWECEK 355 (473)
Q Consensus 279 -~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~ 355 (473)
.-.+..|.+.| ++++|...|.+.++|..+.+ .+..+.-. ...|..+.++..|++|+.-+.|..|+.|+++.
T Consensus 154 ~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e------~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 154 SSASHGVFDRRGKYIITGTSKGKLLVYDAETLE------CVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred cccccccccCCCCEEEEecCcceEEEEecchhe------eeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence 11222455655 99999999999999987432 22222222 36789999999999999999999999999863
Q ss_pred cccc---cce---------eecCcceEEEEEecCCEEEEEeC-CCcEEEEecCCCCceeEEEEecCCC-CceeEEEEecC
Q 012007 356 HLSH---GGV---------LRGHKMAVLCLAAAGNLVFSGSA-DRNICLWRREESGAHSCLAVLTGHT-GPVKCLAVEED 421 (473)
Q Consensus 356 ~~~~---~~~---------~~~~~~~v~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~h~-~~V~~l~~~~~ 421 (473)
-... ... ...-.-...|++-+|.|+++|+. ...++||.... +.+++.+.|.. .....+.|+|-
T Consensus 228 i~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~---GsLVKILhG~kgE~l~DV~whp~ 304 (405)
T KOG1273|consen 228 IDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI---GSLVKILHGTKGEELLDVNWHPV 304 (405)
T ss_pred hcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCC---cceeeeecCCchhheeecccccc
Confidence 1111 001 11111234677888999988874 35799999887 68889998887 57889999999
Q ss_pred CCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 422 RDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
.. .+++- ..|.|+||.....
T Consensus 305 rp-------------~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 305 RP-------------IIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred ee-------------eeeec-cCCceEEEEeecc
Confidence 87 67777 6789999998654
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-22 Score=186.23 Aligned_cols=266 Identities=13% Similarity=0.113 Sum_probs=185.3
Q ss_pred CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEE-EEEeCCCeEEEEeCCCCCeeeEEeeccccccce
Q 012007 133 GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKI-FTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKD 209 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 209 (473)
++++++++.|+.|++||.. +.+..+..+. .+.+++|+|+++.+ ++++.++.|++||..+++......
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--------- 70 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP--------- 70 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc---------
Confidence 4578899999999999964 4445555443 46789999999877 566788999999998775432211
Q ss_pred eEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE-eCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC
Q 012007 210 YVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD 288 (473)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~ 288 (473)
....+..++|+|+++.++++ +.|+.|++||+.+.+.+..+.. ...+.++.++|+
T Consensus 71 ------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~d 125 (300)
T TIGR03866 71 ------------------------SGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPD 125 (300)
T ss_pred ------------------------CCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCC
Confidence 11234578899999977665 5689999999999888877763 334678999999
Q ss_pred C-EEEEEeCCC-cEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe-CCCCcEEEEecCCccccccee-e
Q 012007 289 S-LVFTGSADG-TVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG-SSDGLVNFWECEKHLSHGGVL-R 364 (473)
Q Consensus 289 ~-~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~-~ 364 (473)
+ .++++..++ .+.+||.+... . .... .....+..++|+|++++|+++ ..++.|++||+++........ .
T Consensus 126 g~~l~~~~~~~~~~~~~d~~~~~-----~-~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~ 198 (300)
T TIGR03866 126 GKIVVNTSETTNMAHFIDTKTYE-----I-VDNV-LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFE 198 (300)
T ss_pred CCEEEEEecCCCeEEEEeCCCCe-----E-EEEE-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec
Confidence 8 666666654 46777875321 1 1111 122345789999999988654 468999999998764432211 1
Q ss_pred c---C----cceEEEEEecCCEEEE-EeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccE
Q 012007 365 G---H----KMAVLCLAAAGNLVFS-GSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRW 436 (473)
Q Consensus 365 ~---~----~~~v~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~ 436 (473)
. + ...-.+++++++++++ .+.++.|.+||+.+. +.+..+. +...+.+++|+|+++
T Consensus 199 ~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~---~~~~~~~-~~~~~~~~~~~~~g~------------- 261 (300)
T TIGR03866 199 IPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY---EVLDYLL-VGQRVWQLAFTPDEK------------- 261 (300)
T ss_pred ccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC---cEEEEEE-eCCCcceEEECCCCC-------------
Confidence 0 1 0112456788887554 455678999999873 3343332 345789999999998
Q ss_pred EEEEe-eCCCcEEEEEcCCCCC
Q 012007 437 TVYSG-SLDKSVKVWRVSEHAP 457 (473)
Q Consensus 437 ~l~s~-s~Dg~v~iW~i~~~~~ 457 (473)
.|+++ +.+|.|++||+..++.
T Consensus 262 ~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 262 YLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred EEEEEcCCCCeEEEEECCCCcE
Confidence 66665 5799999999998764
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-25 Score=208.96 Aligned_cols=244 Identities=25% Similarity=0.425 Sum_probs=208.0
Q ss_pred CEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEee
Q 012007 134 DLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKS 213 (473)
Q Consensus 134 ~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 213 (473)
.+++.+..+-.+++||..+ +..|...|.++..-..++.+++|+.|..+-+|.+........
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~----~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S--------------- 65 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTRE----FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS--------------- 65 (825)
T ss_pred cccceeeeeeccccccchh----hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe---------------
Confidence 3455555666778888653 456888899998877788999999999999999876654332
Q ss_pred cCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEE
Q 012007 214 SVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF 292 (473)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~ 292 (473)
+.+|..+|.|+.|+++..+|++|+.+|+|++||++.++.++++.+|...+..+.|+|-+ +++
T Consensus 66 -----------------~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a 128 (825)
T KOG0267|consen 66 -----------------LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFA 128 (825)
T ss_pred -----------------eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEec
Confidence 22599999999999999999999999999999999999999999999999999999998 778
Q ss_pred EEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEE
Q 012007 293 TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLC 372 (473)
Q Consensus 293 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 372 (473)
.|+.|+.+++||.+..+ ....+.+|...|..+.|+|+|++++.++.|..++|||+..+. ....+..|...+..
T Consensus 129 ~gStdtd~~iwD~Rk~G------c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk-~~~ef~~~e~~v~s 201 (825)
T KOG0267|consen 129 SGSTDTDLKIWDIRKKG------CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK-LSKEFKSHEGKVQS 201 (825)
T ss_pred cccccccceehhhhccC------ceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccc-cccccccccccccc
Confidence 99999999999997322 356677799999999999999999999999999999998754 34567788888877
Q ss_pred EEec--CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 373 LAAA--GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 373 ~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
+.++ .-++++|+.|++|++||+++ .+.+.........|.+++|+|++.
T Consensus 202 le~hp~e~Lla~Gs~d~tv~f~dlet---fe~I~s~~~~~~~v~~~~fn~~~~ 251 (825)
T KOG0267|consen 202 LEFHPLEVLLAPGSSDRTVRFWDLET---FEVISSGKPETDGVRSLAFNPDGK 251 (825)
T ss_pred cccCchhhhhccCCCCceeeeeccce---eEEeeccCCccCCceeeeecCCce
Confidence 6654 66899999999999999998 778888877788999999999998
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-23 Score=192.42 Aligned_cols=294 Identities=14% Similarity=0.186 Sum_probs=218.8
Q ss_pred EEEEecCCEEEEeeCCCcEEEeeCCcc--ccc--------------------cccCc----ccEEEEEEeCCCCEEEEEe
Q 012007 127 YSLAASGDLLYTGSDSKNIRVWKNLKE--FSG--------------------FKSNS----GLVKAIIISGDSNKIFTGH 180 (473)
Q Consensus 127 ~~~~~~g~~l~tg~~dg~i~vwd~~~~--~~~--------------------~~~h~----~~V~~l~~s~~~~~l~s~~ 180 (473)
.|++.+.++|++|+.+|.|++|+.... +.+ +.+-. -...++.|++...+|....
T Consensus 264 nCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVY 343 (1080)
T KOG1408|consen 264 NCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVY 343 (1080)
T ss_pred ceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEE
Confidence 477778999999999999999973211 000 00000 1245678898889999999
Q ss_pred CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC-----------CCE
Q 012007 181 QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE-----------QGL 249 (473)
Q Consensus 181 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-----------~~~ 249 (473)
.|..++|||+..-+..-. ....+.|...|+.+.--|- ..-
T Consensus 344 ndhSlYvWDvrD~~kvgk-----------------------------~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~c 394 (1080)
T KOG1408|consen 344 NDHSLYVWDVRDVNKVGK-----------------------------CSSMLYHSACIWDVENLPCNVHSPTAACLPRGC 394 (1080)
T ss_pred cCceEEEEeccccccccc-----------------------------eeeeeeccceeeeeccccccccCcccccCCccc
Confidence 999999999987543211 1112236666666554331 135
Q ss_pred EEEEeCCCCEEEEEcCCCe---eeEE----------------------------------eecCCCceeEEEEcCCC-EE
Q 012007 250 LYSGSWDKTLKVWRISDCK---CLES----------------------------------INAHDDAINSVVAGFDS-LV 291 (473)
Q Consensus 250 l~s~s~dg~v~vwd~~~~~---~~~~----------------------------------~~~~~~~v~~l~~~~~~-~l 291 (473)
+++++.|++|++||+..+. ..+. .-.....+.+++++|++ +|
T Consensus 395 F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhL 474 (1080)
T KOG1408|consen 395 FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHL 474 (1080)
T ss_pred eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCccee
Confidence 8999999999999996521 1000 00123468999999998 89
Q ss_pred EEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc---CCCEEEEeCCCCcEEEEecCCcccccceeecCcc
Q 012007 292 FTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ---ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKM 368 (473)
Q Consensus 292 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 368 (473)
++|...|.|+||++. .......+..|+..|.|+.|+. ..++|++++.|..|++||......+.+.+.+|..
T Consensus 475 AsGDr~GnlrVy~Lq------~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSs 548 (1080)
T KOG1408|consen 475 ASGDRGGNLRVYDLQ------ELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSS 548 (1080)
T ss_pred cccCccCceEEEEeh------hhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccccc
Confidence 999999999999995 3344567889999999999986 3478999999999999999877777777777777
Q ss_pred eEEEEEe---------------------------------------------------cCCEEEEEeCCCcEEEEecCCC
Q 012007 369 AVLCLAA---------------------------------------------------AGNLVFSGSADRNICLWRREES 397 (473)
Q Consensus 369 ~v~~~~~---------------------------------------------------~~~~l~s~~~dg~i~iwd~~~~ 397 (473)
.|+++.+ ..+++++++.|..|+||++.++
T Consensus 549 sITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg 628 (1080)
T KOG1408|consen 549 SITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG 628 (1080)
T ss_pred ceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccc
Confidence 6665443 2368999999999999999996
Q ss_pred CceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCCCCcccc
Q 012007 398 GAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGLHSPTQM 468 (473)
Q Consensus 398 ~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~~~~~~~ 468 (473)
+..+.++--.+|.+....+...|.+- +|++.+.|+++.++|+.+++.......+...+
T Consensus 629 Kq~k~FKgs~~~eG~lIKv~lDPSgi-------------Y~atScsdktl~~~Df~sgEcvA~m~GHsE~V 686 (1080)
T KOG1408|consen 629 KQVKSFKGSRDHEGDLIKVILDPSGI-------------YLATSCSDKTLCFVDFVSGECVAQMTGHSEAV 686 (1080)
T ss_pred ceeeeecccccCCCceEEEEECCCcc-------------EEEEeecCCceEEEEeccchhhhhhcCcchhe
Confidence 55555555556878888899999998 99999999999999999998877766555443
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.7e-22 Score=178.18 Aligned_cols=291 Identities=15% Similarity=0.261 Sum_probs=220.9
Q ss_pred eecccEEEEEec----CCEEEEe--eCCCcEEEeeCCcc--ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q 012007 121 RKEGHIYSLAAS----GDLLYTG--SDSKNIRVWKNLKE--FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSR 192 (473)
Q Consensus 121 ~h~~~V~~~~~~----g~~l~tg--~~dg~i~vwd~~~~--~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~ 192 (473)
..+..|.|++|+ |.+|+.- +.+..+.|||..+. ....+.-++.|....|+|.+.-|+.....|.+..|+.+.
T Consensus 152 ~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~ 231 (626)
T KOG2106|consen 152 FFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRG 231 (626)
T ss_pred cccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccC
Confidence 346678888875 5555554 44668889997644 344555678899999999775555555567999999988
Q ss_pred CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEE
Q 012007 193 KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES 272 (473)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~ 272 (473)
+.......+... .....|.|++|.++|+ +++|..+|.|.||+..+.+..+.
T Consensus 232 ~~l~k~~~~fek----------------------------~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~ 282 (626)
T KOG2106|consen 232 GSLVKRQGIFEK----------------------------REKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQ 282 (626)
T ss_pred CceEEEeecccc----------------------------ccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeE
Confidence 765544332211 1336799999999886 78999999999999988888887
Q ss_pred eecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCc----------------------------------ceeeee
Q 012007 273 INAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGT----------------------------------KHCLAQ 318 (473)
Q Consensus 273 ~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~----------------------------------~~~~~~ 318 (473)
..+|.+.|.+++...+|.|++|+.|..|..||-....... ......
T Consensus 283 ~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~ 362 (626)
T KOG2106|consen 283 VHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTL 362 (626)
T ss_pred eeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceE
Confidence 7799999999999999999999999999999833111100 000113
Q ss_pred eeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCC
Q 012007 319 VLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESG 398 (473)
Q Consensus 319 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 398 (473)
...+|......++.+|+...+++++.|+.+++|+ .. +..-............+.|.| .++.|...|...+.|.++
T Consensus 363 ~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~-k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~-- 437 (626)
T KOG2106|consen 363 TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DH-KLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTET-- 437 (626)
T ss_pred EEEecccceeeEEcCCChhheeeccCcceEEEcc-CC-ceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEeccc--
Confidence 3556788889999999999999999999999999 22 222233334445556666778 999999999999999988
Q ss_pred ceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 399 AHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 399 ~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
...+..... +.++++++|+|++. +||.|+.|+.|+||.+........
T Consensus 438 -~~lv~~~~d-~~~ls~v~ysp~G~-------------~lAvgs~d~~iyiy~Vs~~g~~y~ 484 (626)
T KOG2106|consen 438 -QDLVTIHTD-NEQLSVVRYSPDGA-------------FLAVGSHDNHIYIYRVSANGRKYS 484 (626)
T ss_pred -ceeEEEEec-CCceEEEEEcCCCC-------------EEEEecCCCeEEEEEECCCCcEEE
Confidence 445555445 88999999999999 999999999999999998765544
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-23 Score=179.06 Aligned_cols=262 Identities=18% Similarity=0.275 Sum_probs=194.2
Q ss_pred eeeeecccEEEEEec----CCEEEEeeCCCcEEEeeCC------------------ccccccccCcccEEEEEEeCCC-C
Q 012007 118 SIVRKEGHIYSLAAS----GDLLYTGSDSKNIRVWKNL------------------KEFSGFKSNSGLVKAIIISGDS-N 174 (473)
Q Consensus 118 ~l~~h~~~V~~~~~~----g~~l~tg~~dg~i~vwd~~------------------~~~~~~~~h~~~V~~l~~s~~~-~ 174 (473)
...+|.+.|..+... ..+.|+-+..|.|+||++. +++.++.+|.+.=++|+|||-. .
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 344567766665533 4478888999999999853 2355677899889999999932 2
Q ss_pred EEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEE
Q 012007 175 KIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSG 253 (473)
Q Consensus 175 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~ 253 (473)
.|++|..-+.|++|...++.-.... .-+.+|+..|..|+|+| ....|++|
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~-----------------------------~Pf~gH~~SVEDLqWSptE~~vfaSc 276 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQ-----------------------------RPFTGHTKSVEDLQWSPTEDGVFASC 276 (440)
T ss_pred ccccCccccceEeeeeccCceeecC-----------------------------ccccccccchhhhccCCccCceEEee
Confidence 5888888889999998886532211 11225999999999999 45689999
Q ss_pred eCCCCEEEEEcCCC---eeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEE
Q 012007 254 SWDKTLKVWRISDC---KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTA 329 (473)
Q Consensus 254 s~dg~v~vwd~~~~---~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~ 329 (473)
+.||+|+|||++.+ .++. .++|...|+.|.|+... +|++|+.||+++|||++.... ..++..+..|..+|++
T Consensus 277 S~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~---~~pVA~fk~Hk~pIts 352 (440)
T KOG0302|consen 277 SCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKS---GQPVATFKYHKAPITS 352 (440)
T ss_pred ecCceEEEEEecCCCccceeE-eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccC---CCcceeEEeccCCeeE
Confidence 99999999999987 3333 38899999999998775 899999999999999986543 2567788999999999
Q ss_pred EEEccC-CCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecC
Q 012007 330 LAVNQE-SAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTG 408 (473)
Q Consensus 330 l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 408 (473)
|.|+|. ...|++++.|..|.|||+.-.......-. -+ .+. +-|+. .+++....+
T Consensus 353 ieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~---------------~a----~~~--L~dlP----pQLLFVHqG 407 (440)
T KOG0302|consen 353 IEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQ---------------EA----AEG--LQDLP----PQLLFVHQG 407 (440)
T ss_pred EEeccccCceEEeccCCCcEEEEEeeccCChhhhcc---------------cc----ccc--hhcCC----ceeEEEecc
Confidence 999994 57888999999999999864322110000 00 011 11332 355655544
Q ss_pred CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 409 HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 409 h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
+..|..+.|+++-.. +|++.+.|| +.||.
T Consensus 408 -Qke~KevhWH~QiPG------------~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 408 -QKEVKEVHWHRQIPG------------LLVSTAIDG-FNVFK 436 (440)
T ss_pred -hhHhhhheeccCCCC------------eEEEecccc-eeEEE
Confidence 456899999998775 899999998 55554
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=188.92 Aligned_cols=253 Identities=17% Similarity=0.309 Sum_probs=200.5
Q ss_pred ccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCC
Q 012007 158 KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA 237 (473)
Q Consensus 158 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (473)
..|.+-|.++.++...++++||+. |-|+|||+...... ..+..++. ......
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k--~PvsqLdc-------------------------l~rdny 467 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK--SPVSQLDC-------------------------LNRDNY 467 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC--Cccccccc-------------------------cCcccc
Confidence 358888999999999999999886 46999999765211 11111110 014567
Q ss_pred eeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee--EEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcce
Q 012007 238 VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL--ESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKH 314 (473)
Q Consensus 238 v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~--~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~ 314 (473)
|.++.+.|||+.|++|++-.+|.|||+....+. .++....-...+++.+||. ..++++.||.|.|||+. .+
T Consensus 468 iRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLh------nq 541 (705)
T KOG0639|consen 468 IRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH------NQ 541 (705)
T ss_pred eeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc------cc
Confidence 889999999999999999999999999765443 3333333456778889997 88899999999999996 45
Q ss_pred eeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEE--EecCCEEEEEeCCCcEEEE
Q 012007 315 CLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCL--AAAGNLVFSGSADRNICLW 392 (473)
Q Consensus 315 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~~~dg~i~iw 392 (473)
.++..+.+|...+.||.++++|..|.+|+-|.+|+.||++.+.++...- ....|.++ +|.+.+|+.|-+++.+.|.
T Consensus 542 ~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd--F~SQIfSLg~cP~~dWlavGMens~vevl 619 (705)
T KOG0639|consen 542 TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD--FSSQIFSLGYCPTGDWLAVGMENSNVEVL 619 (705)
T ss_pred eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh--hhhhheecccCCCccceeeecccCcEEEE
Confidence 5788999999999999999999999999999999999999876654322 23445444 5779999999999999988
Q ss_pred ecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCCC
Q 012007 393 RREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGLH 463 (473)
Q Consensus 393 d~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~~ 463 (473)
.... .....+.-|..-|.++.|.+.++ ++++.|.|.-+..|...-+...++..+
T Consensus 620 h~sk----p~kyqlhlheScVLSlKFa~cGk-------------wfvStGkDnlLnawrtPyGasiFqskE 673 (705)
T KOG0639|consen 620 HTSK----PEKYQLHLHESCVLSLKFAYCGK-------------WFVSTGKDNLLNAWRTPYGASIFQSKE 673 (705)
T ss_pred ecCC----ccceeecccccEEEEEEecccCc-------------eeeecCchhhhhhccCccccceeeccc
Confidence 8776 23445667899999999999999 899999999999999988877666544
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=189.23 Aligned_cols=301 Identities=20% Similarity=0.261 Sum_probs=219.2
Q ss_pred EEEEeeCCCcEEEeeCC----ccccccccCcccEEEEEEeCCCC---EEEEEeCCCeEEEEeCCCCCeee----EEeecc
Q 012007 135 LLYTGSDSKNIRVWKNL----KEFSGFKSNSGLVKAIIISGDSN---KIFTGHQDGKIRIWKVSRKNASV----HKRVGS 203 (473)
Q Consensus 135 ~l~tg~~dg~i~vwd~~----~~~~~~~~h~~~V~~l~~s~~~~---~l~s~~~dg~i~vwd~~~~~~~~----~~~~~~ 203 (473)
++|.|+.+..|.++... ..+..+.+|...|.+|+|...+. +|+++++|..||||.+.-..... ......
T Consensus 161 lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~ 240 (764)
T KOG1063|consen 161 LLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTT 240 (764)
T ss_pred EEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccccccc
Confidence 57777888888888544 56778999999999999976543 89999999999999986443211 000000
Q ss_pred ccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC--ee-----eEEeecC
Q 012007 204 LPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC--KC-----LESINAH 276 (473)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~--~~-----~~~~~~~ 276 (473)
.+. ...... ...+.+.-....+..||.+.|.++.|+|.+..|++++.|.++.+|...+. -- +..+.+.
T Consensus 241 ~~~--~~~f~~---l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~ 315 (764)
T KOG1063|consen 241 LSN--LPVFMI---LEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGS 315 (764)
T ss_pred ccC--Cceeee---eeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeeccccc
Confidence 000 000000 01112333334566799999999999999999999999999999987543 21 2222334
Q ss_pred CCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC-
Q 012007 277 DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE- 354 (473)
Q Consensus 277 ~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~- 354 (473)
........|++++ .+++-+..|..++|... ............+|...|+.++|+|.|.+|++.+.|.+-|+|-.-
T Consensus 316 a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~---d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg 392 (764)
T KOG1063|consen 316 AGGFWGGLWSPNSNVIIAHGRTGGFHLWKTK---DKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWG 392 (764)
T ss_pred ccceeeEEEcCCCCEEEEecccCcEEEEecc---CccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccc
Confidence 4557888888887 78888999999999832 224555667788999999999999999999999999887775311
Q ss_pred ---------Ccc--------------------------------------------------------------------
Q 012007 355 ---------KHL-------------------------------------------------------------------- 357 (473)
Q Consensus 355 ---------~~~-------------------------------------------------------------------- 357 (473)
.+.
T Consensus 393 ~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnK 472 (764)
T KOG1063|consen 393 RQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNK 472 (764)
T ss_pred cccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCC
Confidence 000
Q ss_pred -------------------------------------------cccceeecCcceEEEEE--ecCCEEEEEeCCC-----
Q 012007 358 -------------------------------------------SHGGVLRGHKMAVLCLA--AAGNLVFSGSADR----- 387 (473)
Q Consensus 358 -------------------------------------------~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg----- 387 (473)
.....+.||...|.+++ ++++++|+++...
T Consensus 473 a~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehA 552 (764)
T KOG1063|consen 473 AFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHA 552 (764)
T ss_pred CCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccce
Confidence 00012346777787766 4599999998653
Q ss_pred cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCc
Q 012007 388 NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDL 459 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~ 459 (473)
.|++|+..+ +..++.+.+|.-.|+.|+|+||++ +|++.|.|.++.+|+..+....-
T Consensus 553 vI~lw~t~~---W~~~~~L~~HsLTVT~l~FSpdg~-------------~LLsvsRDRt~sl~~~~~~~~~e 608 (764)
T KOG1063|consen 553 VIRLWNTAN---WLQVQELEGHSLTVTRLAFSPDGR-------------YLLSVSRDRTVSLYEVQEDIKDE 608 (764)
T ss_pred EEEEEeccc---hhhhheecccceEEEEEEECCCCc-------------EEEEeecCceEEeeeeecccchh
Confidence 499999988 777888999999999999999999 99999999999999997655433
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-21 Score=181.79 Aligned_cols=282 Identities=20% Similarity=0.260 Sum_probs=217.1
Q ss_pred cccEEEEEec--CCEEEEeeCCCcEEEeeCCcc---ccccccC-cccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCee
Q 012007 123 EGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE---FSGFKSN-SGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNAS 196 (473)
Q Consensus 123 ~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~~---~~~~~~h-~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 196 (473)
...|.+++++ .+.||.+-.||.|.||++... ...+.++ ...|.+++|+ ++..|++.+.+|.|.-||+.+.+..
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~ 103 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQK 103 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCcee
Confidence 4568888876 668999999999999997632 2233343 5789999999 4558999999999999999988765
Q ss_pred eEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeE--Eee
Q 012007 197 VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE--SIN 274 (473)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~--~~~ 274 (473)
..... ..+.|++++.+|.+..++.|+.||.+..++...++... .+.
T Consensus 104 ~~~d~--------------------------------~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~ 151 (691)
T KOG2048|consen 104 YNIDS--------------------------------NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLM 151 (691)
T ss_pred EEecC--------------------------------CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecc
Confidence 44432 56789999999999999999999988888887776654 344
Q ss_pred cCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceee-eeeec-cCCccEEEEEEccCCCEEEEeCCCCcEEEE
Q 012007 275 AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCL-AQVLL-KHENAVTALAVNQESAVVYCGSSDGLVNFW 351 (473)
Q Consensus 275 ~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~-~~~~~v~~l~~~~~~~~l~~~~~dg~i~iw 351 (473)
...+.|.++.|.+++ .+++|+.||.|++||...+........ ...+. ....-|.++.|-.+ ..|++|.+-|+|.+|
T Consensus 152 rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FW 230 (691)
T KOG2048|consen 152 RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFW 230 (691)
T ss_pred cccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEE
Confidence 566899999999999 599999999999999975432110000 01111 13445788888755 468899999999999
Q ss_pred ecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCc-eeEEEEecCCCCceeEEEEecCCCCCccc
Q 012007 352 ECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREESGA-HSCLAVLTGHTGPVKCLAVEEDRDHDHEY 428 (473)
Q Consensus 352 d~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~~~~~ 428 (473)
|...+... +....|...|.|+.. +++++++++.|+.|..|...+... +........|...|.+++..++
T Consensus 231 d~~~gTLi-qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~------- 302 (691)
T KOG2048|consen 231 DSIFGTLI-QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN------- 302 (691)
T ss_pred cccCcchh-hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc-------
Confidence 99876544 556678888988875 478999999999999998876433 3444555678889999999987
Q ss_pred ccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 429 HQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 429 ~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
.+++||.|.++.+=....
T Consensus 303 --------~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 303 --------ALISGGRDFTLAICSSRE 320 (691)
T ss_pred --------eEEecceeeEEEEccccc
Confidence 699999999998876655
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.6e-22 Score=183.96 Aligned_cols=247 Identities=19% Similarity=0.321 Sum_probs=198.2
Q ss_pred CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 160 NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
-...|.++|++.+.+.||.+-.||.|.+|++...-.......+ +....|.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g------------------------------~~drsIE 73 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG------------------------------PEDRSIE 73 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec------------------------------CCCCcee
Confidence 3578999999999999999999999999999875332221111 2557899
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeee
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQ 318 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 318 (473)
+++|. ++..|++.+.+|.|.-||+.+++.+..+....+.|++++.+|.+ .++.|+.||.+..++... .......
T Consensus 74 ~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p----~~I~~~r 148 (691)
T KOG2048|consen 74 SLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGP----DKITYKR 148 (691)
T ss_pred eEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCC----ceEEEEe
Confidence 99999 45678888889999999999999999999999999999999988 888999999777776642 2333344
Q ss_pred eeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccc-------eeecCcceEEEEEe-cCCEEEEEeCCCcEE
Q 012007 319 VLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGG-------VLRGHKMAVLCLAA-AGNLVFSGSADRNIC 390 (473)
Q Consensus 319 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~ 390 (473)
.+....+.|.+++|+|++..|+.|+.||.|++||..++..... .-++...-|.++.+ ....|++|..-|+|+
T Consensus 149 ~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~ 228 (691)
T KOG2048|consen 149 SLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVT 228 (691)
T ss_pred ecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEE
Confidence 5556679999999999999999999999999999987654431 11112222333322 477899999999999
Q ss_pred EEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 391 LWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 391 iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
+||... ..+++.+..|..-|.+|+..+++. .++++|.|+.|.-+.......
T Consensus 229 FWd~~~---gTLiqS~~~h~adVl~Lav~~~~d-------------~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 229 FWDSIF---GTLIQSHSCHDADVLALAVADNED-------------RVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred EEcccC---cchhhhhhhhhcceeEEEEcCCCC-------------eEEEccCCCceEEEEecCCcc
Confidence 999988 678888899999999999999988 899999999999998887754
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-22 Score=179.53 Aligned_cols=289 Identities=18% Similarity=0.214 Sum_probs=215.3
Q ss_pred eeeeeeecccEEEEEec----CCEEEEeeCCCcEEEeeCC------ccccccccCcccEEEEEEeCCC-CEEEEEeCCCe
Q 012007 116 IGSIVRKEGHIYSLAAS----GDLLYTGSDSKNIRVWKNL------KEFSGFKSNSGLVKAIIISGDS-NKIFTGHQDGK 184 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~----g~~l~tg~~dg~i~vwd~~------~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~ 184 (473)
...+.-|.+.|+++.|. -+++|+|..-|.|-+||+. ..+..+..|.++|.+|.|+|.. ..+++.+.||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 44566788999999876 3689999999999999983 3355677899999999999965 68999999999
Q ss_pred EEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEc
Q 012007 185 IRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264 (473)
Q Consensus 185 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~ 264 (473)
|++-|++........... .....+..+.|+.+...++.+..=|...+||+
T Consensus 259 iR~~D~~~~i~e~v~s~~------------------------------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~ 308 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLD------------------------------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDL 308 (498)
T ss_pred eeeeeecchhhHHHhhcC------------------------------ccceeeeeccccCCCccEEEeecccceEEEEe
Confidence 999999876432222211 03345677888888788888887789999999
Q ss_pred CCCee-eEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEE
Q 012007 265 SDCKC-LESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC 341 (473)
Q Consensus 265 ~~~~~-~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~ 341 (473)
++... ...+..|+..|..++++|-. ++++++.|++.+|||++.-.. +..+......|...|.+..|+|.+..|++
T Consensus 309 R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~--K~sp~lst~~HrrsV~sAyFSPs~gtl~T 386 (498)
T KOG4328|consen 309 RTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRG--KASPFLSTLPHRRSVNSAYFSPSGGTLLT 386 (498)
T ss_pred ecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcC--CCCcceecccccceeeeeEEcCCCCceEe
Confidence 98655 66777899999999999986 899999999999999985432 22134566789999999999998877999
Q ss_pred eCCCCcEEEEecC---CcccccceeecCcce----E----EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCC-
Q 012007 342 GSSDGLVNFWECE---KHLSHGGVLRGHKMA----V----LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGH- 409 (473)
Q Consensus 342 ~~~dg~i~iwd~~---~~~~~~~~~~~~~~~----v----~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h- 409 (473)
.+.|..|+|||.. ....+...+ .|... . ..|.|+.+++++|-.-..|-|+|-.. .+.+..+...
T Consensus 387 T~~D~~IRv~dss~~sa~~~p~~~I-~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~---~q~v~el~~P~ 462 (498)
T KOG4328|consen 387 TCQDNEIRVFDSSCISAKDEPLGTI-PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNG---GQMVCELHDPE 462 (498)
T ss_pred eccCCceEEeecccccccCCcccee-eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCC---CEEeeeccCcc
Confidence 9999999999984 212222222 12211 1 34567889999999999999999887 4555554433
Q ss_pred CCceeE-EEEecCCCCCcccccCCCccEEEEEee-CCCcEEEEEcC
Q 012007 410 TGPVKC-LAVEEDRDHDHEYHQKGDQRWTVYSGS-LDKSVKVWRVS 453 (473)
Q Consensus 410 ~~~V~~-l~~~~~~~~~~~~~~~~~~~~~l~s~s-~Dg~v~iW~i~ 453 (473)
...|.+ ..|+|-+. .+++|+ ..|.|.||.-.
T Consensus 463 ~~tI~~vn~~HP~~~-------------~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 463 SSTIPSVNEFHPMRD-------------TLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccccccceeeccccc-------------ceeccCCccceEEEEecC
Confidence 224544 47899876 355544 56778888643
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-23 Score=179.99 Aligned_cols=210 Identities=17% Similarity=0.281 Sum_probs=172.5
Q ss_pred eeccCCeeEEEEcCCC--CEEEEEeCCCCEEEEEcCC----------------CeeeEEeecCCCceeEEEEcCC--CEE
Q 012007 232 IRHYDAVSCLSLNAEQ--GLLYSGSWDKTLKVWRISD----------------CKCLESINAHDDAINSVVAGFD--SLV 291 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~~--~~l~s~s~dg~v~vwd~~~----------------~~~~~~~~~~~~~v~~l~~~~~--~~l 291 (473)
+.|.+.++.+.-.+-+ .+.++=+..|.|+|||+.. .+++.++.+|...=..++|+|- |.+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 3588888888877754 4555556789999999842 3567888899999999999984 589
Q ss_pred EEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC-CCEEEEeCCCCcEEEEecCCcc-cccceeecCcce
Q 012007 292 FTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE-SAVVYCGSSDGLVNFWECEKHL-SHGGVLRGHKMA 369 (473)
Q Consensus 292 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~ 369 (473)
++|..-+.|++|....+ .-..-...+.+|...|..|+|+|. ..+|++|+.||+|+|||++.+. ......+.|..-
T Consensus 228 lsGDc~~~I~lw~~~~g---~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTG---SWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD 304 (440)
T ss_pred ccCccccceEeeeeccC---ceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence 99999999999988653 233334456679999999999995 4789999999999999999762 333345789999
Q ss_pred EEEEEecC--CEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcE
Q 012007 370 VLCLAAAG--NLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSV 447 (473)
Q Consensus 370 v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v 447 (473)
|..++|++ .+||+|+.||+++|||++.-+..+++..+..|..+|++|.|+|.... .|+++|.|..|
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s------------~iaasg~D~Qi 372 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDS------------VIAASGEDNQI 372 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCc------------eEEeccCCCcE
Confidence 99999873 48999999999999999987777899999999999999999998775 89999999999
Q ss_pred EEEEcCCCC
Q 012007 448 KVWRVSEHA 456 (473)
Q Consensus 448 ~iW~i~~~~ 456 (473)
.|||+.-..
T Consensus 373 tiWDlsvE~ 381 (440)
T KOG0302|consen 373 TIWDLSVEA 381 (440)
T ss_pred EEEEeeccC
Confidence 999997543
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=170.36 Aligned_cols=241 Identities=20% Similarity=0.305 Sum_probs=181.5
Q ss_pred cccCcccEEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeecc
Q 012007 157 FKSNSGLVKAIIISG-DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY 235 (473)
Q Consensus 157 ~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (473)
...|.+.|+++.+.+ .|+|+++|+.||.|.|||++............ . .... .......+|.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~---------k---~~c~-----v~~~h~~~Hk 101 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIA---------K---HKCI-----VAKQHENGHK 101 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcccee---------h---eeee-----ccccCCccce
Confidence 455889999999976 58999999999999999998654211100000 0 0000 0001112488
Q ss_pred CCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC----EEEEEeCCCcEEEEeCcccCC
Q 012007 236 DAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS----LVFTGSADGTVKVWRRELQGK 310 (473)
Q Consensus 236 ~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~----~l~s~~~dg~i~vwd~~~~~~ 310 (473)
-.|..+.|-| |...+.+++.|.+++|||..+.+....++ ..+.|..-+++|-. ++++|..|-.|++.|+..+
T Consensus 102 y~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-- 178 (397)
T KOG4283|consen 102 YAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-- 178 (397)
T ss_pred eeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC--
Confidence 8999999999 77799999999999999999998888876 45667777777643 7889999999999999643
Q ss_pred CcceeeeeeeccCCccEEEEEEccCCC-EEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcE
Q 012007 311 GTKHCLAQVLLKHENAVTALAVNQESA-VVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNI 389 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i 389 (473)
.....+.+|...|.++.|+|... .|++|+.||.|++||++... |..
T Consensus 179 ----s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras-----------------------------gcf 225 (397)
T KOG4283|consen 179 ----SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS-----------------------------GCF 225 (397)
T ss_pred ----cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccc-----------------------------cee
Confidence 35678899999999999999765 57889999999999998631 233
Q ss_pred EEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCCC
Q 012007 390 CLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGLH 463 (473)
Q Consensus 390 ~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~~ 463 (473)
++.|..+......++.-..|.+.|++++|..++. ++++++.|..+++|+..++...++.+.
T Consensus 226 ~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~-------------~l~~~gtd~r~r~wn~~~G~ntl~~~g 286 (397)
T KOG4283|consen 226 RVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR-------------YLASCGTDDRIRVWNMESGRNTLREFG 286 (397)
T ss_pred EEeecccCccCccccccccccceeeeeeecccch-------------hhhhccCccceEEeecccCcccccccc
Confidence 3444433222334445568999999999999998 799999999999999999877666543
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-21 Score=186.05 Aligned_cols=315 Identities=16% Similarity=0.258 Sum_probs=229.3
Q ss_pred ceeeeeeecccEEEEEec--CC-EEEEeeCCCcEEEeeCCcc--ccc-cccCcccEEEEEEeCCCCEEEEEeCCCeEEEE
Q 012007 115 LIGSIVRKEGHIYSLAAS--GD-LLYTGSDSKNIRVWKNLKE--FSG-FKSNSGLVKAIIISGDSNKIFTGHQDGKIRIW 188 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~~--g~-~l~tg~~dg~i~vwd~~~~--~~~-~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw 188 (473)
.+.+++.-.|.|++++|. |. .||+|+..|.+-+||+.+. +.. ...|.+.|....|.+....|++++.|..+++|
T Consensus 236 il~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~ 315 (910)
T KOG1539|consen 236 ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVW 315 (910)
T ss_pred EEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEE
Confidence 444444335999999985 65 7888888999999998733 333 34789999999999999999999999999999
Q ss_pred eCCCCCeeeE---Eee----------------------ccccccce----------------------------------
Q 012007 189 KVSRKNASVH---KRV----------------------GSLPTFKD---------------------------------- 209 (473)
Q Consensus 189 d~~~~~~~~~---~~~----------------------~~~~~~~~---------------------------------- 209 (473)
=.+++..... .+. .....+..
T Consensus 316 vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~ 395 (910)
T KOG1539|consen 316 VFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL 395 (910)
T ss_pred EeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence 7664332100 000 00000000
Q ss_pred --eEeecCCC------cceE------------EEeecce-eeEeecc------CCeeEEEEcCCCCEEEEEeCCCCEEEE
Q 012007 210 --YVKSSVNP------KNYV------------EVRRNRS-VLKIRHY------DAVSCLSLNAEQGLLYSGSWDKTLKVW 262 (473)
Q Consensus 210 --~~~~~~~~------~~~~------------~~~~~~~-~~~~~~~------~~v~~l~~~~~~~~l~s~s~dg~v~vw 262 (473)
.+...... .+.+ ..+.... ...+.+. ..+++++.++.|++.+.|+..|.|-+|
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f 475 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF 475 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence 00000000 0000 0000000 1112233 578899999999999999999999999
Q ss_pred EcCCCeeeEEe---ecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCE
Q 012007 263 RISDCKCLESI---NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAV 338 (473)
Q Consensus 263 d~~~~~~~~~~---~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 338 (473)
++.+|-....+ ++|+.+|+.++...-+ .+++++.+|.+++||.... .+. ....-...++++.++.....
T Consensus 476 NmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k------~l~-~~l~l~~~~~~iv~hr~s~l 548 (910)
T KOG1539|consen 476 NMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKK------VLK-KSLRLGSSITGIVYHRVSDL 548 (910)
T ss_pred EcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCc------cee-eeeccCCCcceeeeeehhhh
Confidence 99999888888 5899999999987666 8999999999999998622 122 22233567888999988899
Q ss_pred EEEeCCCCcEEEEecCCcccccceeecCcceEEEE--EecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEE
Q 012007 339 VYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCL--AAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCL 416 (473)
Q Consensus 339 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l 416 (473)
++.+..|-.|+++|..+. .....+.+|...++.+ ++||++|++++.|++|++||+.+ ..++-.+. -..+++.+
T Consensus 549 ~a~~~ddf~I~vvD~~t~-kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt---~~lID~~~-vd~~~~sl 623 (910)
T KOG1539|consen 549 LAIALDDFSIRVVDVVTR-KVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPT---GTLIDGLL-VDSPCTSL 623 (910)
T ss_pred hhhhcCceeEEEEEchhh-hhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccC---cceeeeEe-cCCcceee
Confidence 999999999999999874 4557888999888655 56799999999999999999999 45555443 35688999
Q ss_pred EEecCCCCCcccccCCCccEEEEEeeCC-CcEEEEEcCC
Q 012007 417 AVEEDRDHDHEYHQKGDQRWTVYSGSLD-KSVKVWRVSE 454 (473)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~l~s~s~D-g~v~iW~i~~ 454 (473)
.|+|++. +|||...| .-|++|.=..
T Consensus 624 s~SPngD-------------~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 624 SFSPNGD-------------FLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred EECCCCC-------------EEEEEEecCceEEEEEchh
Confidence 9999999 99999998 6799997443
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-22 Score=183.05 Aligned_cols=256 Identities=13% Similarity=0.216 Sum_probs=203.2
Q ss_pred EEEEEecC-CEEEEe--eCCCcEEEeeCCcc---cc---ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCee
Q 012007 126 IYSLAASG-DLLYTG--SDSKNIRVWKNLKE---FS---GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNAS 196 (473)
Q Consensus 126 V~~~~~~g-~~l~tg--~~dg~i~vwd~~~~---~~---~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 196 (473)
+.++.|+. .+|+++ +.|..|++|.-... +. ...+. .-.|++......|+++|+..+.|+|||+....+.
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h 114 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH 114 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHh
Confidence 56777763 345555 55889999964322 11 12222 3344444445589999999999999999854322
Q ss_pred eEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecC
Q 012007 197 VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH 276 (473)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 276 (473)
.... +|.+.|+++.++....+|++++..|.|.|..+.++.....|...
T Consensus 115 r~lk--------------------------------dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~ 162 (673)
T KOG4378|consen 115 RFLK--------------------------------DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID 162 (673)
T ss_pred hhcc--------------------------------CCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC
Confidence 2111 49999999999999999999999999999999998888888755
Q ss_pred -CCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC-CCEEEEeCCCCcEEEEe
Q 012007 277 -DDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE-SAVVYCGSSDGLVNFWE 352 (473)
Q Consensus 277 -~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i~iwd 352 (473)
...|.-+.+++.. +|.+++.+|.|.+||+. ...........|..+...|+|+|. ..+|++.+.|..|.+||
T Consensus 163 sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~-----g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD 237 (673)
T KOG4378|consen 163 SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ-----GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYD 237 (673)
T ss_pred CCCeEEEeecccccceeeEeeccCCeEEEEecc-----CCCcccchhhhccCCcCcceecCCccceEEEecccceEEEee
Confidence 3455688888876 78899999999999997 333345567789999999999994 56788899999999999
Q ss_pred cCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCC
Q 012007 353 CEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDR 422 (473)
Q Consensus 353 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 422 (473)
.+...........|.....+|.++|.+|++|...|.|..||++.. ..++.++..|...|++++|.+..
T Consensus 238 ~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~--k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 238 IRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST--KAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccC--CCCceEeeecccceeEEEeeecc
Confidence 998777767777888888999999999999999999999999974 57888999999999999999874
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-22 Score=189.96 Aligned_cols=242 Identities=18% Similarity=0.242 Sum_probs=192.6
Q ss_pred ccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCC
Q 012007 158 KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA 237 (473)
Q Consensus 158 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (473)
..|...-+.|+|.++|.+|++|+.||.|++|+........... ..+...
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti-------------------------------~~~g~~ 58 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETI-------------------------------DISGEL 58 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchh-------------------------------hccCce
Confidence 3588889999999999999999999999999987652111100 015666
Q ss_pred eeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceee
Q 012007 238 VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCL 316 (473)
Q Consensus 238 v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~ 316 (473)
|.+++. .+++|++|+.+++|.+|.+.+++.-..+....-++.+++++.+| +++.|+.|-.|++.+..... .
T Consensus 59 v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s------~ 130 (933)
T KOG1274|consen 59 VSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS------Q 130 (933)
T ss_pred eEEEee--cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc------h
Confidence 777765 45699999999999999998887665555566789999999887 89999999999999986433 4
Q ss_pred eeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccce---ee------cCcceEEEEEecCCEEEEEeCCC
Q 012007 317 AQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV---LR------GHKMAVLCLAAAGNLVFSGSADR 387 (473)
Q Consensus 317 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~------~~~~~v~~~~~~~~~l~s~~~dg 387 (473)
...+.+|..+|.++.|+|++++||+.+.||.|++||+.++...... .+ .......+|+|++..|+..+.|+
T Consensus 131 ~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~ 210 (933)
T KOG1274|consen 131 EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN 210 (933)
T ss_pred heeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC
Confidence 5778999999999999999999999999999999999865332211 00 11122356777877888888899
Q ss_pred cEEEEecCCCCceeEEEEecC--CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 388 NICLWRREESGAHSCLAVLTG--HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~~~~--h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
.|++|+..+ +.....+.. +...+.+++|+|.|. +||+++.||.|.|||+.+
T Consensus 211 ~Vkvy~r~~---we~~f~Lr~~~~ss~~~~~~wsPnG~-------------YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 211 TVKVYSRKG---WELQFKLRDKLSSSKFSDLQWSPNGK-------------YIAASTLDGQILVWNVDT 263 (933)
T ss_pred eEEEEccCC---ceeheeecccccccceEEEEEcCCCc-------------EEeeeccCCcEEEEeccc
Confidence 999999988 555555543 445599999999999 999999999999999996
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=180.17 Aligned_cols=225 Identities=20% Similarity=0.307 Sum_probs=175.2
Q ss_pred CCEEEEeeCCCcEEEeeCC--c---cc------------------cccccCcccEEEEEEeCCC-CEEEEEeCCCeEEEE
Q 012007 133 GDLLYTGSDSKNIRVWKNL--K---EF------------------SGFKSNSGLVKAIIISGDS-NKIFTGHQDGKIRIW 188 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~--~---~~------------------~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~vw 188 (473)
|+|+|.|+.|..|.|||+. . +. ..-.+|+.+|.++.|+.+- +.||+|+.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 7799999999999999852 0 00 0123689999999997753 589999999999999
Q ss_pred eCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCC
Q 012007 189 KVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDC 267 (473)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~ 267 (473)
|+.++++..... .|.+.|.++.|+| ...+|++|+.|++|.+.|++..
T Consensus 272 D~~~g~p~~s~~--------------------------------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 272 DVDTGKPKSSIT--------------------------------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred EcCCCCcceehh--------------------------------hcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 999998765544 3899999999999 5679999999999999999853
Q ss_pred eeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC-CEEEEeCC
Q 012007 268 KCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES-AVVYCGSS 344 (473)
Q Consensus 268 ~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~ 344 (473)
......-...+.|-.++|.+.. .++++..||.|+-+|+|.. ..++..+..|...|.+|++++.- .++++++.
T Consensus 320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~-----~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~ 394 (463)
T KOG0270|consen 320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP-----GKPVWTLKAHDDEISGLSVNIQTPGLLSTAST 394 (463)
T ss_pred cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCC-----CCceeEEEeccCCcceEEecCCCCcceeeccc
Confidence 3322222245678999998876 7889999999999999943 35678889999999999999854 67889999
Q ss_pred CCcEEEEecCCcccccceeecCc---ceEEEEEec---CCEEEEEeCCCcEEEEecCC
Q 012007 345 DGLVNFWECEKHLSHGGVLRGHK---MAVLCLAAA---GNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 345 dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~ 396 (473)
|+.|++|++...... ....|. +...|++++ .-.++.|+..+.++|||+.+
T Consensus 395 d~~Vklw~~~~~~~~--~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 395 DKVVKLWKFDVDSPK--SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred cceEEEEeecCCCCc--ccccccccccceeecccCCCcceEEEecCccceEEEeeccc
Confidence 999999998743221 112222 124555554 45788889888999999987
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=185.89 Aligned_cols=121 Identities=19% Similarity=0.298 Sum_probs=104.5
Q ss_pred ccEEEEEEcc-CCCEEEEeCCCCcEEEEecCC------cccccceeecCcceEEEEEec---CCEEEEEeCCCcEEEEec
Q 012007 325 NAVTALAVNQ-ESAVVYCGSSDGLVNFWECEK------HLSHGGVLRGHKMAVLCLAAA---GNLVFSGSADRNICLWRR 394 (473)
Q Consensus 325 ~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~ 394 (473)
..|+.+.|.| |...|++++.||.|++|.+.. ......++..|...|+.+.+. .+.|++++.|.+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 4578889999 678899999999999999864 234456788999999998876 689999999999999999
Q ss_pred CCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccC
Q 012007 395 EESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKG 461 (473)
Q Consensus 395 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~ 461 (473)
.+ ......+.+|++.|.+++|+|+++ .+|+.+.||+|+||+-.+.+..+..
T Consensus 708 ~~---~~~~~~l~gHtdqIf~~AWSpdGr-------------~~AtVcKDg~~rVy~Prs~e~pv~E 758 (1012)
T KOG1445|consen 708 AN---AKLYSRLVGHTDQIFGIAWSPDGR-------------RIATVCKDGTLRVYEPRSREQPVYE 758 (1012)
T ss_pred hh---hhhhheeccCcCceeEEEECCCCc-------------ceeeeecCceEEEeCCCCCCCcccc
Confidence 98 566778899999999999999999 8999999999999999887655543
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-22 Score=171.82 Aligned_cols=274 Identities=14% Similarity=0.292 Sum_probs=203.2
Q ss_pred CEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeC--CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccce
Q 012007 134 DLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISG--DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKD 209 (473)
Q Consensus 134 ~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 209 (473)
..+|++...|.|++||.. +.+..++++...++.++|.. ....+.+|+.||+|++||+.............
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~------ 114 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQ------ 114 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccC------
Confidence 578999999999999865 47888999999999999977 45789999999999999998876544443321
Q ss_pred eEeecCCCcceEEEeecceeeEeecc-CCeeEEEEcCCCCEEEEEe----CCCCEEEEEcCCCee-eEEe-ecCCCceeE
Q 012007 210 YVKSSVNPKNYVEVRRNRSVLKIRHY-DAVSCLSLNAEQGLLYSGS----WDKTLKVWRISDCKC-LESI-NAHDDAINS 282 (473)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~s~s----~dg~v~vwd~~~~~~-~~~~-~~~~~~v~~ 282 (473)
+. .+..|++.+..++.+++|. .|-.|.+||++..+. +..+ ..|.+.|++
T Consensus 115 ------------------------~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~ 170 (376)
T KOG1188|consen 115 ------------------------QSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQ 170 (376)
T ss_pred ------------------------CCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCccee
Confidence 32 4667777777788888885 356799999998766 5554 579999999
Q ss_pred EEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC-CEEEEeCCCCcEEEEecCCcccc
Q 012007 283 VVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES-AVVYCGSSDGLVNFWECEKHLSH 359 (473)
Q Consensus 283 l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 359 (473)
+.|+|.. +|++|+.||.|.+||+.... ....+.....|...|.++.|..++ +.|.+-+......+|+++.+...
T Consensus 171 lrFHP~~pnlLlSGSvDGLvnlfD~~~d~---EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~ 247 (376)
T KOG1188|consen 171 LRFHPSDPNLLLSGSVDGLVNLFDTKKDN---EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE 247 (376)
T ss_pred EEecCCCCCeEEeecccceEEeeecCCCc---chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence 9999986 99999999999999997542 223344556778889999999877 45888888999999999865432
Q ss_pred cceeec------------CcceEEEEEec-CCEEEEEeC-CCcEEEEecC---CCCceeEEEEecC-CCCceeEEEEecC
Q 012007 360 GGVLRG------------HKMAVLCLAAA-GNLVFSGSA-DRNICLWRRE---ESGAHSCLAVLTG-HTGPVKCLAVEED 421 (473)
Q Consensus 360 ~~~~~~------------~~~~v~~~~~~-~~~l~s~~~-dg~i~iwd~~---~~~~~~~~~~~~~-h~~~V~~l~~~~~ 421 (473)
...... ...-|.+.++. ...++.++. -+...++-+. ++.....+..+.+ |...|.++.|...
T Consensus 248 ~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~ 327 (376)
T KOG1188|consen 248 TWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVK 327 (376)
T ss_pred hcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcc
Confidence 211111 11223344443 444555444 5666666544 3333455666666 7778899999877
Q ss_pred CCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 422 RDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
+. +++|||.||.+.+|...
T Consensus 328 ~~-------------~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 328 ND-------------VLYTGGEDGLLQAWKVE 346 (376)
T ss_pred cc-------------eeeccCCCceEEEEecC
Confidence 76 89999999999999964
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-24 Score=201.00 Aligned_cols=199 Identities=26% Similarity=0.453 Sum_probs=177.0
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~ 312 (473)
|...|.|+..-..++.+++|++|..+-+|.+.....+..+.+|..+|.++.++... +|++|+.+|+|++||++.
T Consensus 27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee----- 101 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE----- 101 (825)
T ss_pred hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh-----
Confidence 88899999987788999999999999999998888888899999999999999887 888999999999999973
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceE--EEEEecCCEEEEEeCCCcEE
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSADRNIC 390 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~~dg~i~ 390 (473)
...+..+.+|...+.++.|+|-+.+.+.|+.|+.+++||.+.. -+...+.+|...+ ..|+|+|++++.|++|..++
T Consensus 102 -Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~-Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvk 179 (825)
T KOG0267|consen 102 -AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK-GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVK 179 (825)
T ss_pred -hhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc-CceeeecCCcceeEEEeecCCCceeeccCCcceee
Confidence 2345688999999999999999999999999999999999853 3345666777655 55778999999999999999
Q ss_pred EEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 391 LWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 391 iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
|||... ++.+..|..|.+.|..+.|+|..- ++++||.|++|++||+.+.
T Consensus 180 i~d~~a---gk~~~ef~~~e~~v~sle~hp~e~-------------Lla~Gs~d~tv~f~dletf 228 (825)
T KOG0267|consen 180 IWDLTA---GKLSKEFKSHEGKVQSLEFHPLEV-------------LLAPGSSDRTVRFWDLETF 228 (825)
T ss_pred eecccc---cccccccccccccccccccCchhh-------------hhccCCCCceeeeecccee
Confidence 999987 678889999999999999999887 8999999999999999843
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=167.37 Aligned_cols=265 Identities=15% Similarity=0.228 Sum_probs=203.3
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCCccc--------------ccccc-CcccEEEEEEe-------CCCCEEEEEeCCCeE
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNLKEF--------------SGFKS-NSGLVKAIIIS-------GDSNKIFTGHQDGKI 185 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~~~~--------------~~~~~-h~~~V~~l~~s-------~~~~~l~s~~~dg~i 185 (473)
.++|||..|++-+.|..+++|++.... ..++- ....|...+|- |+.+++++.+.|.-|
T Consensus 56 kWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PI 135 (406)
T KOG2919|consen 56 KWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPI 135 (406)
T ss_pred eeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCce
Confidence 578899999999999999999753111 11111 23567788885 577899999999999
Q ss_pred EEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccC---CeeEEEEcCCCCEEEEEeCCCCEEEE
Q 012007 186 RIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYD---AVSCLSLNAEQGLLYSGSWDKTLKVW 262 (473)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~l~~~~~~~~l~s~s~dg~v~vw 262 (473)
++||.-+++.......- .|.+ +..+++|+|||.+|++|. ..+|+++
T Consensus 136 h~wdaftG~lraSy~~y------------------------------dh~de~taAhsL~Fs~DGeqlfaGy-krcirvF 184 (406)
T KOG2919|consen 136 HLWDAFTGKLRASYRAY------------------------------DHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVF 184 (406)
T ss_pred eeeeccccccccchhhh------------------------------hhHHhhhhheeEEecCCCCeEeecc-cceEEEe
Confidence 99999998865544321 1333 346899999999999876 6899999
Q ss_pred Ec-CCCeee--EEee-----cCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEE
Q 012007 263 RI-SDCKCL--ESIN-----AHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAV 332 (473)
Q Consensus 263 d~-~~~~~~--~~~~-----~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 332 (473)
|+ +.|+.. .... +..+.+.|++++|.. .++.|+....+-||.-. ...+...+.+|.+.|+.+.|
T Consensus 185 dt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~------~~~pl~llggh~gGvThL~~ 258 (406)
T KOG2919|consen 185 DTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD------GRRPLQLLGGHGGGVTHLQW 258 (406)
T ss_pred eccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC------CCCceeeecccCCCeeeEEe
Confidence 99 455422 1112 336788999999976 78999999988888764 33456777899999999999
Q ss_pred ccCCCEEEEeCC-CCcEEEEecCCcccccceeecCcc-e----EEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEe
Q 012007 333 NQESAVVYCGSS-DGLVNFWECEKHLSHGGVLRGHKM-A----VLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVL 406 (473)
Q Consensus 333 ~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~-~----v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 406 (473)
.++|+.|++|.. |-.|..||++....+...+..|.. . ...+.+.+++|++|+.||.|++||+++. ...+..+
T Consensus 259 ~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~--gn~~sv~ 336 (406)
T KOG2919|consen 259 CEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL--GNEVSVT 336 (406)
T ss_pred ccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC--CCccccc
Confidence 999999999876 678999999987666666666654 2 2455677999999999999999999874 2356677
Q ss_pred cCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCC
Q 012007 407 TGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLD 444 (473)
Q Consensus 407 ~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~D 444 (473)
..|...|+.++++|--+ ++++++..
T Consensus 337 ~~~sd~vNgvslnP~mp-------------ilatssGq 361 (406)
T KOG2919|consen 337 GNYSDTVNGVSLNPIMP-------------ILATSSGQ 361 (406)
T ss_pred ccccccccceecCcccc-------------eeeeccCc
Confidence 78899999999999977 78887754
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-21 Score=169.54 Aligned_cols=302 Identities=16% Similarity=0.242 Sum_probs=202.0
Q ss_pred ccEEEEEec---CCEEEEeeCCCcEEEeeCC-----------ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEe
Q 012007 124 GHIYSLAAS---GDLLYTGSDSKNIRVWKNL-----------KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 124 ~~V~~~~~~---g~~l~tg~~dg~i~vwd~~-----------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd 189 (473)
.+|+++.+. ...||||+.|..|++|.+. +-+..+..|..+|+++.|+|+|..|++|+.+|.|.+|.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 467777765 3389999999999999643 12445778999999999999999999999999999998
Q ss_pred CCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee
Q 012007 190 VSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
...-....... ....+...++ ......+|.+.|..++|++++.++++++.|..+++||+..|+.
T Consensus 94 ~~~~~~~~~d~-----------e~~~~ke~w~-----v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l 157 (434)
T KOG1009|consen 94 QGDVRIFDADT-----------EADLNKEKWV-----VKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL 157 (434)
T ss_pred ecCcCCccccc-----------hhhhCccceE-----EEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee
Confidence 76411100000 0000111111 1122335999999999999999999999999999999999999
Q ss_pred eEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCccee--eee--ee---------ccCC----ccEEEEE
Q 012007 270 LESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHC--LAQ--VL---------LKHE----NAVTALA 331 (473)
Q Consensus 270 ~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~--~~---------~~~~----~~v~~l~ 331 (473)
+..+..|...+..++|.|.+ ++++-+.|...+.+.+.......... ... .. .-|+ .-...++
T Consensus 158 ~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRls 237 (434)
T KOG1009|consen 158 LAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLS 237 (434)
T ss_pred EeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcc
Confidence 99999999999999999987 77788888876666654322111100 000 00 0111 1234578
Q ss_pred EccCCCEEEEeCC----CC-----cEEEEecCCcccccceeecCcceEEEEEe--------------------cCCEEEE
Q 012007 332 VNQESAVVYCGSS----DG-----LVNFWECEKHLSHGGVLRGHKMAVLCLAA--------------------AGNLVFS 382 (473)
Q Consensus 332 ~~~~~~~l~~~~~----dg-----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--------------------~~~~l~s 382 (473)
|+|+|.+|++... .+ ..++|+-.....+...+..-...+..+.+ -+..++.
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfai 317 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAI 317 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEE
Confidence 9999999887542 22 23455543322332223322222222211 1334556
Q ss_pred EeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 383 GSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 383 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
++ .+.|.|||.+...+..++. .-|-..|++++|++++. +++..|.||...+-.+...+.
T Consensus 318 At-~~svyvydtq~~~P~~~v~--nihy~~iTDiaws~dg~-------------~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 318 AT-KNSVYVYDTQTLEPLAVVD--NIHYSAITDIAWSDDGS-------------VLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred ee-cceEEEeccccccceEEEe--eeeeeeecceeecCCCc-------------EEEEeccCCceEEEEEcchhc
Confidence 65 4579999998843333333 34778899999999999 899999999988877765543
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-21 Score=165.49 Aligned_cols=284 Identities=18% Similarity=0.262 Sum_probs=205.7
Q ss_pred eeecccEEEEEec-------CCEEEEeeCCCcEEEeeCCc-----cccccc--cCcccEEEEEEeCC----CCEEEEEeC
Q 012007 120 VRKEGHIYSLAAS-------GDLLYTGSDSKNIRVWKNLK-----EFSGFK--SNSGLVKAIIISGD----SNKIFTGHQ 181 (473)
Q Consensus 120 ~~h~~~V~~~~~~-------g~~l~tg~~dg~i~vwd~~~-----~~~~~~--~h~~~V~~l~~s~~----~~~l~s~~~ 181 (473)
..|...|+.++++ .+.+|+.|.+ .+.+|+... .+..+. .|.+....++|+-+ ..+||.||.
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~ 113 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY 113 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence 4566778887775 3367777764 788886432 222222 36778888899654 358999999
Q ss_pred CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC-CCEEEEEeCCCCEE
Q 012007 182 DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLK 260 (473)
Q Consensus 182 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~v~ 260 (473)
-|.|+|.|+.+++...... +|...|+.|.+.|+ .+++++++.|..|+
T Consensus 114 ~GvIrVid~~~~~~~~~~~--------------------------------ghG~sINeik~~p~~~qlvls~SkD~svR 161 (385)
T KOG1034|consen 114 LGVIRVIDVVSGQCSKNYR--------------------------------GHGGSINEIKFHPDRPQLVLSASKDHSVR 161 (385)
T ss_pred eeEEEEEecchhhhcccee--------------------------------ccCccchhhhcCCCCCcEEEEecCCceEE
Confidence 9999999999887654443 59999999999995 47999999999999
Q ss_pred EEEcCCCeeeEEe---ecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcc---------------------ee
Q 012007 261 VWRISDCKCLESI---NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTK---------------------HC 315 (473)
Q Consensus 261 vwd~~~~~~~~~~---~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~---------------------~~ 315 (473)
+|++++..++..+ .+|.+.|.++.|+.++ +|++++.|..|++|++...+-... ..
T Consensus 162 lwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~f 241 (385)
T KOG1034|consen 162 LWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHF 241 (385)
T ss_pred EEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccc
Confidence 9999999999887 4799999999999998 999999999999999872211000 00
Q ss_pred e-eeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCc-ccccc---------ee---e--cCcceEEEEEec--C
Q 012007 316 L-AQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH-LSHGG---------VL---R--GHKMAVLCLAAA--G 377 (473)
Q Consensus 316 ~-~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~---------~~---~--~~~~~v~~~~~~--~ 377 (473)
+ .....-|...|-|+.|- |+++++-+-++.|..|...+. ..... ++ . .....-..+++| +
T Consensus 242 p~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~ 319 (385)
T KOG1034|consen 242 PDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ 319 (385)
T ss_pred ccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH
Confidence 0 01234567777777775 578999899999999987321 11000 11 1 111222344444 8
Q ss_pred CEEEEEeCCCcEEEEecCCCCceeEEEEec--CCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 378 NLVFSGSADRNICLWRREESGAHSCLAVLT--GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 378 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
++||.|...|.|.+||++...+..+ .++. .-...|...+|+.|+. +|+..++|++|.-||.
T Consensus 320 ~~la~gnq~g~v~vwdL~~~ep~~~-ttl~~s~~~~tVRQ~sfS~dgs-------------~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 320 KMLALGNQSGKVYVWDLDNNEPPKC-TTLTHSKSGSTVRQTSFSRDGS-------------ILVLVCDDGTVWRWDR 382 (385)
T ss_pred HHHhhccCCCcEEEEECCCCCCccC-ceEEeccccceeeeeeecccCc-------------EEEEEeCCCcEEEEEe
Confidence 8999999999999999998544322 2222 2245799999999998 8999999999999985
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-22 Score=198.50 Aligned_cols=270 Identities=19% Similarity=0.252 Sum_probs=203.3
Q ss_pred eCCCcEEEeeCC--ccc---cccc--cCcccEEEEEEeCCCCE----EEEEeCCCeEEEEeCCCCCeeeEEeeccccccc
Q 012007 140 SDSKNIRVWKNL--KEF---SGFK--SNSGLVKAIIISGDSNK----IFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFK 208 (473)
Q Consensus 140 ~~dg~i~vwd~~--~~~---~~~~--~h~~~V~~l~~s~~~~~----l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 208 (473)
+.+.++.||.+. ... +..- .-....+.++|.+.|.. |+.|..||.|.+||....... .....+
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~--~~~~~l---- 109 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIAN--ASEEVL---- 109 (1049)
T ss_pred ccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccC--cchHHH----
Confidence 445677777532 111 1111 12457889999887765 888999999999998753100 000000
Q ss_pred eeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCC-CEEEEEeCCCCEEEEEcCCCeeeEEee--cCCCceeEEEE
Q 012007 209 DYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRISDCKCLESIN--AHDDAINSVVA 285 (473)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~v~~l~~ 285 (473)
...-.|++.|..+.|++.. ++|++|+.||.|.|||+.+.+.-.... ...+.|.++.|
T Consensus 110 --------------------a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 110 --------------------ATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred --------------------hhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 0111399999999999954 599999999999999998755444432 24578999999
Q ss_pred cCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccC--CccEEEEEEccCC-CEEEEeCCCC---cEEEEecCCcc
Q 012007 286 GFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKH--ENAVTALAVNQES-AVVYCGSSDG---LVNFWECEKHL 357 (473)
Q Consensus 286 ~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~v~~l~~~~~~-~~l~~~~~dg---~i~iwd~~~~~ 357 (473)
+..- .|++++.+|.+.|||++... .+..+..+ ...+..++|+|+. ..|++++.|. .|.+||++...
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~------pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as 243 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKK------PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS 243 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCC------cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC
Confidence 8764 78999999999999998321 22222222 2457899999976 4455555543 69999999888
Q ss_pred cccceeecCcceEEEEEec---CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCc
Q 012007 358 SHGGVLRGHKMAVLCLAAA---GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQ 434 (473)
Q Consensus 358 ~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~ 434 (473)
...+++.+|...|++++|+ ..+|++++.|+.|.+|+.++ .+.+..+......+..+.|.|....
T Consensus 244 sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t---gEvl~~~p~~~nW~fdv~w~pr~P~---------- 310 (1049)
T KOG0307|consen 244 SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT---GEVLGELPAQGNWCFDVQWCPRNPS---------- 310 (1049)
T ss_pred CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC---ceEeeecCCCCcceeeeeecCCCcc----------
Confidence 8888899999999999985 58999999999999999999 6788888888889999999998875
Q ss_pred cEEEEEeeCCCcEEEEEcCCCC
Q 012007 435 RWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 435 ~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
+|+.++.||.|.|+.+....
T Consensus 311 --~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 311 --VMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred --hhhhheeccceeeeeeecCC
Confidence 89999999999999998765
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-21 Score=161.71 Aligned_cols=277 Identities=20% Similarity=0.276 Sum_probs=200.8
Q ss_pred eeeeeeecccEEEEEec---CCEEEEeeCC-------CcEEEeeCCccccc-----------cc-cCcccEEEEEEeCCC
Q 012007 116 IGSIVRKEGHIYSLAAS---GDLLYTGSDS-------KNIRVWKNLKEFSG-----------FK-SNSGLVKAIIISGDS 173 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~---g~~l~tg~~d-------g~i~vwd~~~~~~~-----------~~-~h~~~V~~l~~s~~~ 173 (473)
...|..|.|.|+.++.+ .++|+|+..+ ..+-||.+.+.+.. +. .+-+.|.|+.|.|++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 34567788999998854 6677777542 25778976543322 32 355789999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC--CCCEEE
Q 012007 174 NKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA--EQGLLY 251 (473)
Q Consensus 174 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~ 251 (473)
..|++-. |..|.+|+++............. ..++....++-+|+| +++.++
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~--------------------------s~e~~~~ftsg~WspHHdgnqv~ 188 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSE--------------------------SAEMRHSFTSGAWSPHHDGNQVA 188 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccc--------------------------cccccceecccccCCCCccceEE
Confidence 9998865 78999999987765321111100 012566778889998 788888
Q ss_pred EEeCCCCEEEEEcCCCeeeEEee-cCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEE
Q 012007 252 SGSWDKTLKVWRISDCKCLESIN-AHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVT 328 (473)
Q Consensus 252 s~s~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~ 328 (473)
+.+ |+++..||+++.++...++ +|...|..+.|+|+. .|++|+.||.|++||.+ ....++..+.+|...|.
T Consensus 189 tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R-----~tk~pv~el~~HsHWvW 262 (370)
T KOG1007|consen 189 TTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR-----KTKFPVQELPGHSHWVW 262 (370)
T ss_pred EeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEecc-----CCCccccccCCCceEEE
Confidence 776 7999999999988877764 788999999999987 89999999999999998 56667889999999999
Q ss_pred EEEEccC-CCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCC--CcEEEEecCCCCceeEEEE
Q 012007 329 ALAVNQE-SAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSAD--RNICLWRREESGAHSCLAV 405 (473)
Q Consensus 329 ~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~ 405 (473)
++.|+|. .++|++|+.|..|.+|-...-.....+..++...-. -..| ..++ -+. ...+.+
T Consensus 263 ~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~-----------e~~dseer~k--pL~----dg~l~t 325 (370)
T KOG1007|consen 263 AVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESES-----------EDEDSEERVK--PLQ----DGQLET 325 (370)
T ss_pred EEEecCccceEEEecCCCceeEEEeccccccccccccccccccC-----------cchhhHHhcc--ccc----cccccc
Confidence 9999994 578889999999999976532211111111111000 0001 1111 111 234677
Q ss_pred ecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 406 LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 406 ~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
+..|...|.+++|+.-.+ |+||+-+.||.|.|=++..
T Consensus 326 ydehEDSVY~~aWSsadP------------WiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 326 YDEHEDSVYALAWSSADP------------WIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccccccceEEEeeccCCC------------eeEEEeccCceEEeecCCh
Confidence 889999999999998776 6999999999999877754
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.5e-21 Score=166.77 Aligned_cols=295 Identities=14% Similarity=0.180 Sum_probs=213.0
Q ss_pred eeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--------cccccc-ccCcccEEEEEEeCCCCEEEEEeCCCe
Q 012007 116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--------KEFSGF-KSNSGLVKAIIISGDSNKIFTGHQDGK 184 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--------~~~~~~-~~h~~~V~~l~~s~~~~~l~s~~~dg~ 184 (473)
..-+.+|.|.|.++.|+ +++||+|+.|..++||++. +.+... ..|...|.|++|....++|++|+.+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 34577899999998886 8899999999999999854 222222 235689999999999999999999999
Q ss_pred EEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEc
Q 012007 185 IRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264 (473)
Q Consensus 185 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~ 264 (473)
|..-|+++.+.+...... ...+.|..+..+|..+.|++.+.++.|.+||.
T Consensus 129 VI~HDiEt~qsi~V~~~~------------------------------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~ 178 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANEN------------------------------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDN 178 (609)
T ss_pred eEeeecccceeeeeeccc------------------------------CcccceeecccCCCCceEEEEecCceEEEEec
Confidence 999999988754433311 13348999999999999999999999999999
Q ss_pred CCCe-eeE--EeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCccee-eeeeeccCCccEEEEEEccCCCE
Q 012007 265 SDCK-CLE--SINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHC-LAQVLLKHENAVTALAVNQESAV 338 (473)
Q Consensus 265 ~~~~-~~~--~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~ 338 (473)
+... .+. .+.........+.|+|.. +|++.+..+-+.+||++......... ....+......-..+.|+|+|..
T Consensus 179 Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q 258 (609)
T KOG4227|consen 179 RDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQ 258 (609)
T ss_pred cCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCe
Confidence 8755 221 122234566778888886 88999999999999998543211000 00111112233467899999999
Q ss_pred EEEeCCCCcEEEEecCCcccccceeecCc-------ceEEEEEec-CCEEEEEeCCCcEEEEecCCC----C--------
Q 012007 339 VYCGSSDGLVNFWECEKHLSHGGVLRGHK-------MAVLCLAAA-GNLVFSGSADRNICLWRREES----G-------- 398 (473)
Q Consensus 339 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~----~-------- 398 (473)
|++--....-.+||+-.......... |. ..+.++.+- ..-+++|+.+-.|++|.+... +
T Consensus 259 ~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~ 337 (609)
T KOG4227|consen 259 FMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDE 337 (609)
T ss_pred ehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcch
Confidence 88877666677888876444332222 21 122233333 344899999999999998531 1
Q ss_pred --------ceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 399 --------AHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 399 --------~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
....+.++.||...++.+.|+|... +|++.|..+.++||.-..
T Consensus 338 ~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~-------------~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 338 EEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNN-------------LLVSSGVENSFKLWSDHR 388 (609)
T ss_pred hhCchhheecceeEEEecccccccceeecCCcc-------------eEeccchhhheecccccc
Confidence 1234667899999999999999987 899999999999997543
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-19 Score=167.63 Aligned_cols=255 Identities=9% Similarity=0.089 Sum_probs=170.9
Q ss_pred EEEEecCCEE-EEeeCCCcEEEeeCCc--cccccccCcccEEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCCeeeEEeec
Q 012007 127 YSLAASGDLL-YTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIISGDSNKIFTG-HQDGKIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 127 ~~~~~~g~~l-~tg~~dg~i~vwd~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~ 202 (473)
.+++++|+.+ ++++.++.|++||... ....+..+. .+..++|+|+++.++++ +.|+.|++||+.+.+......
T Consensus 36 l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~-- 112 (300)
T TIGR03866 36 ITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP-- 112 (300)
T ss_pred eEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee--
Confidence 3455678766 5677899999999753 333344333 35788999999977655 568999999998765332221
Q ss_pred cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCC-CEEEEEcCCCeeeEEeecCCCcee
Q 012007 203 SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDK-TLKVWRISDCKCLESINAHDDAIN 281 (473)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg-~v~vwd~~~~~~~~~~~~~~~~v~ 281 (473)
+...+.+++|+|++.+++++..++ .+.+||..+++.+..+.. .....
T Consensus 113 -------------------------------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~ 160 (300)
T TIGR03866 113 -------------------------------VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPR 160 (300)
T ss_pred -------------------------------CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCcc
Confidence 233467899999999999998775 467789988887665543 33457
Q ss_pred EEEEcCCC-EE-EEEeCCCcEEEEeCcccCCCcceeeee-eeccCCccEEEEEEccCCCEEEE-eCCCCcEEEEecCCcc
Q 012007 282 SVVAGFDS-LV-FTGSADGTVKVWRRELQGKGTKHCLAQ-VLLKHENAVTALAVNQESAVVYC-GSSDGLVNFWECEKHL 357 (473)
Q Consensus 282 ~l~~~~~~-~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~~-~~~dg~i~iwd~~~~~ 357 (473)
++.|++++ .+ +++..++.|++||++............ ...........++|+|+++++++ ...++.|.+||+++..
T Consensus 161 ~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~ 240 (300)
T TIGR03866 161 FAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE 240 (300)
T ss_pred EEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 78999988 45 445569999999997432111000000 00001112456889999998655 3556789999998755
Q ss_pred cccceeecCcceEEEEEecCCEEEEE-eCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEec
Q 012007 358 SHGGVLRGHKMAVLCLAAAGNLVFSG-SADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEE 420 (473)
Q Consensus 358 ~~~~~~~~~~~~v~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~ 420 (473)
.......++.....+++++|++|+++ +.++.|.+||+.+ .+++..+... ...+.|+++|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~---~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 241 VLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA---LKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC---CcEEEEEEcc-cccceeEeCC
Confidence 44333334444445667789998886 4689999999998 4566666544 4458888765
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-21 Score=160.85 Aligned_cols=283 Identities=14% Similarity=0.195 Sum_probs=197.4
Q ss_pred eeeeecccEEEEEec-CCEEEEeeCCCcEEEeeCC--ccccccc-cCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Q 012007 118 SIVRKEGHIYSLAAS-GDLLYTGSDSKNIRVWKNL--KEFSGFK-SNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRK 193 (473)
Q Consensus 118 ~l~~h~~~V~~~~~~-g~~l~tg~~dg~i~vwd~~--~~~~~~~-~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~ 193 (473)
.|++|.+.|+++.|+ ..+|++|..-|.|++|++. +....++ .|...|+.+..-|+ ..|.+-+.|+.+.+|++...
T Consensus 9 vLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s 87 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYS 87 (323)
T ss_pred EeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCc
Confidence 456899999999998 6689999999999999865 4455666 57788999999887 47889999999999999875
Q ss_pred CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-----CC----CEEEEEeCC-CCEEEEE
Q 012007 194 NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-----EQ----GLLYSGSWD-KTLKVWR 263 (473)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-----~~----~~l~s~s~d-g~v~vwd 263 (473)
....... =.++++-|.+ ++ ..++.-+.. ..+.+-|
T Consensus 88 ~~i~i~S-----------------------------------i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D 132 (323)
T KOG0322|consen 88 AFISIHS-----------------------------------IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQD 132 (323)
T ss_pred ceEEEee-----------------------------------eeccccccccceeccCCCcchhheecCCcccchhhhhc
Confidence 4332222 1122222221 11 011111100 0122233
Q ss_pred cCCCeeeEEe----ecCCCceeEEEEcCC-C---EEEEEeCCCcEEEEeCcccCCC----cceeeeeeeccCCccEEEEE
Q 012007 264 ISDCKCLESI----NAHDDAINSVVAGFD-S---LVFTGSADGTVKVWRRELQGKG----TKHCLAQVLLKHENAVTALA 331 (473)
Q Consensus 264 ~~~~~~~~~~----~~~~~~v~~l~~~~~-~---~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~v~~l~ 331 (473)
......+... ....+.+.|..+..+ + ++++|..+|.+.+||+..+.+. ...........|..+|.++.
T Consensus 133 ~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsld 212 (323)
T KOG0322|consen 133 GGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLD 212 (323)
T ss_pred cCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeee
Confidence 2222222221 123456777765433 2 6889999999999999865321 11223344567899999999
Q ss_pred EccCCCEEEEeCCCCcEEEEecCCcc---cccc--eeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEe
Q 012007 332 VNQESAVVYCGSSDGLVNFWECEKHL---SHGG--VLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVL 406 (473)
Q Consensus 332 ~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~--~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 406 (473)
|.+....=++|+.+..+..|++.... +... .++.....-..+.+|++.+|+++.|+.|+||..++ ..++..+
T Consensus 213 yas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrt---l~pLAVL 289 (323)
T KOG0322|consen 213 YASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRT---LNPLAVL 289 (323)
T ss_pred echhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEecc---CCchhhh
Confidence 99876666788888899999886431 1111 12222333467889999999999999999999999 6889999
Q ss_pred cCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 407 TGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 407 ~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
..|.+.|++++|+|+.+ ++|++|.|++|.+|++
T Consensus 290 kyHsagvn~vAfspd~~-------------lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 290 KYHSAGVNAVAFSPDCE-------------LMAAASKDARISLWKL 322 (323)
T ss_pred hhhhcceeEEEeCCCCc-------------hhhhccCCceEEeeec
Confidence 99999999999999977 8999999999999986
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.6e-21 Score=161.79 Aligned_cols=210 Identities=15% Similarity=0.212 Sum_probs=158.2
Q ss_pred EeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee--EEe--ecCCCceeEEEEcCCC--EEEEEeCCCcEEEEe
Q 012007 231 KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL--ESI--NAHDDAINSVVAGFDS--LVFTGSADGTVKVWR 304 (473)
Q Consensus 231 ~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~--~~~--~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd 304 (473)
+.+|.+.|++++|+.||++|++++.|+.|++|++++.... +.+ ...-+.-+.+.|.||. .++++-...++++|.
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk 161 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYK 161 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEE
Confidence 3469999999999999999999999999999999864321 111 1122356788999986 677777888999998
Q ss_pred CcccCCCcce------eeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceee-cCcceEEEEEecC
Q 012007 305 RELQGKGTKH------CLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLR-GHKMAVLCLAAAG 377 (473)
Q Consensus 305 ~~~~~~~~~~------~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~ 377 (473)
+.....+... ........|.-.+..+-...++.+|++++.|..|.+|+++. ..+..+-. .....-.+++|+|
T Consensus 162 ~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG-q~L~~idtnq~~n~~aavSP~G 240 (420)
T KOG2096|consen 162 LVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG-QLLQSIDTNQSSNYDAAVSPDG 240 (420)
T ss_pred eeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCC-ceeeeeccccccccceeeCCCC
Confidence 7543322111 11123345677788888888899999999999999999984 33322221 2234456789999
Q ss_pred CEEEEEeCCCcEEEEecCCCC-----ceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 378 NLVFSGSADRNICLWRREESG-----AHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 378 ~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
++|++++..--|++|.+--.. ....+..+.||...|..++|+++.. .++|.+.||+++|||+
T Consensus 241 RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~-------------r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 241 RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST-------------RAVTVSKDGKWRIWDT 307 (420)
T ss_pred cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc-------------eeEEEecCCcEEEeec
Confidence 999999999999999874321 1234567889999999999999998 7999999999999998
Q ss_pred CC
Q 012007 453 SE 454 (473)
Q Consensus 453 ~~ 454 (473)
.-
T Consensus 308 dV 309 (420)
T KOG2096|consen 308 DV 309 (420)
T ss_pred cc
Confidence 74
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=175.30 Aligned_cols=269 Identities=15% Similarity=0.244 Sum_probs=205.3
Q ss_pred EEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccc
Q 012007 127 YSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSL 204 (473)
Q Consensus 127 ~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 204 (473)
.++.|||..|+.+..| .+.|||.. ..+.++++|...|.|++|+.||+.+++|+.|+.|.+|.-.-..
T Consensus 18 ~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG---------- 86 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG---------- 86 (1081)
T ss_pred eEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc----------
Confidence 3667888877766654 78999976 5678999999999999999999999999999999999864332
Q ss_pred cccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEE
Q 012007 205 PTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284 (473)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~ 284 (473)
.+...|.+.|.|+.|+|-...|++++- ...-+|...... +...+ ....+.+++
T Consensus 87 ------------------------~LkYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~-V~K~k-ss~R~~~Cs 139 (1081)
T KOG1538|consen 87 ------------------------ILKYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKS-VSKHK-SSSRIICCS 139 (1081)
T ss_pred ------------------------eeeeccCCeeeEeecCchHHHhhhcch-hhccccChhhhh-HHhhh-hheeEEEee
Confidence 222349999999999999899999885 357788765432 22221 235678889
Q ss_pred EcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC-----CEEEEeCCCCcEEEEecCCccc
Q 012007 285 AGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES-----AVVYCGSSDGLVNFWECEKHLS 358 (473)
Q Consensus 285 ~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~ 358 (473)
|..|| +++.|-.+|+|.+-+-.. .....+....+.+++|.+++|+|.. ..+++.....++.+|.+.....
T Consensus 140 WtnDGqylalG~~nGTIsiRNk~g----Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~I 215 (1081)
T KOG1538|consen 140 WTNDGQYLALGMFNGTISIRNKNG----EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQI 215 (1081)
T ss_pred ecCCCcEEEEeccCceEEeecCCC----CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceee
Confidence 99998 888999999999986432 2223344455678999999999953 5677888888888888765322
Q ss_pred ccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEE
Q 012007 359 HGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTV 438 (473)
Q Consensus 359 ~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l 438 (473)
-.....+......+..++|.+++.|+.|+.+.+|..+. ..+.++......|+.++..|+++ .+
T Consensus 216 gk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G----vrLGTvg~~D~WIWtV~~~PNsQ-------------~v 278 (1081)
T KOG1538|consen 216 GKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG----VRLGTVGEQDSWIWTVQAKPNSQ-------------YV 278 (1081)
T ss_pred cccccCCCCchhheeccCCcEEEEccCCCceEEEeecC----eEEeeccccceeEEEEEEccCCc-------------eE
Confidence 21222223333345557899999999999999998765 56677766778999999999999 89
Q ss_pred EEeeCCCcEEEEEcCC
Q 012007 439 YSGSLDKSVKVWRVSE 454 (473)
Q Consensus 439 ~s~s~Dg~v~iW~i~~ 454 (473)
+.|+.||+|..|++-.
T Consensus 279 ~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 279 VVGCQDGTIACYNLIF 294 (1081)
T ss_pred EEEEccCeeehhhhHH
Confidence 9999999999998753
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=170.10 Aligned_cols=267 Identities=13% Similarity=0.168 Sum_probs=195.3
Q ss_pred CcEEEeeCC--ccccccccCc--ccEEEEEEeCCCCEEEEE--eCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCC
Q 012007 143 KNIRVWKNL--KEFSGFKSNS--GLVKAIIISGDSNKIFTG--HQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVN 216 (473)
Q Consensus 143 g~i~vwd~~--~~~~~~~~h~--~~V~~l~~s~~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (473)
..+++||.. .....+..|+ ..+..++|..... |+++ +.|..|++|.-..... ....+..
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~-~Vp~~~k------------- 76 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTP-EVPRVRK------------- 76 (673)
T ss_pred CceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCC-ccceeec-------------
Confidence 479999964 2223333332 3489999987663 4444 5578899997654411 1111000
Q ss_pred CcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEe
Q 012007 217 PKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGS 295 (473)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~ 295 (473)
...+.-.|++......++++|+..++|+|||++...+.+.++.|...|+++.+.... +|++++
T Consensus 77 ----------------~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs 140 (673)
T KOG4378|consen 77 ----------------LTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVS 140 (673)
T ss_pred ----------------cccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEec
Confidence 022244555555566899999999999999999888888999999999999987554 999999
Q ss_pred CCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCE-EEEeCCCCcEEEEecCCcccccceeecCcceE--EE
Q 012007 296 ADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAV-VYCGSSDGLVNFWECEKHLSHGGVLRGHKMAV--LC 372 (473)
Q Consensus 296 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v--~~ 372 (473)
..|.|.|..+.+..+. .....+....|.-+.|++..+. |.+++.+|.|.+||.............|..+. .|
T Consensus 141 ~gGdiiih~~~t~~~t-----t~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gic 215 (673)
T KOG4378|consen 141 DGGDIIIHGTKTKQKT-----TTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGIC 215 (673)
T ss_pred cCCcEEEEecccCccc-----cceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcce
Confidence 9999999998754321 1112223455678999997654 56788999999999988777667777888776 56
Q ss_pred EEec-CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 373 LAAA-GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 373 ~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
|+|. ..+|++.+.|..|.+||+... .....+. ...+.+.++|.++|. +|+.|...|.|..||
T Consensus 216 fspsne~l~vsVG~Dkki~~yD~~s~---~s~~~l~-y~~Plstvaf~~~G~-------------~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 216 FSPSNEALLVSVGYDKKINIYDIRSQ---ASTDRLT-YSHPLSTVAFSECGT-------------YLCAGNSKGELIAYD 278 (673)
T ss_pred ecCCccceEEEecccceEEEeecccc---cccceee-ecCCcceeeecCCce-------------EEEeecCCceEEEEe
Confidence 6665 678999999999999999873 3333332 356899999999998 899999999999999
Q ss_pred cCCCCCCccCC
Q 012007 452 VSEHAPDLKGL 462 (473)
Q Consensus 452 i~~~~~~~~~~ 462 (473)
+...+.+.+.+
T Consensus 279 ~R~~k~Pv~v~ 289 (673)
T KOG4378|consen 279 MRSTKAPVAVR 289 (673)
T ss_pred cccCCCCceEe
Confidence 99887766654
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-20 Score=173.65 Aligned_cols=254 Identities=17% Similarity=0.272 Sum_probs=180.9
Q ss_pred EEEeC---CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEE
Q 012007 167 IIISG---DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL 243 (473)
Q Consensus 167 l~~s~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 243 (473)
..|++ ....|+.+..||.|.++|.......... .....+..|..+|..+.|
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee--------------------------~~lk~~~aH~nAifDl~w 108 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEE--------------------------RQLKKPLAHKNAIFDLKW 108 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhh--------------------------hhhcccccccceeEeecc
Confidence 45543 3467899999999999998765432111 111223359999999999
Q ss_pred cCCCCEEEEEeCCCCEEEEEcCCCeeeEE--eecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCC--------
Q 012007 244 NAEQGLLYSGSWDKTLKVWRISDCKCLES--INAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKG-------- 311 (473)
Q Consensus 244 ~~~~~~l~s~s~dg~v~vwd~~~~~~~~~--~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~-------- 311 (473)
-|....|++++.|.++++||+++.+++.. +.+|...|.+++|.+.+ .|++|+.||.|.|||++.....
T Consensus 109 apge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~ 188 (720)
T KOG0321|consen 109 APGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNR 188 (720)
T ss_pred CCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhh
Confidence 99778999999999999999999988776 88999999999999987 8999999999999998743310
Q ss_pred ------c----ce---eeeeeeccCCccEEE---EEEccCCCEEEEeCC-CCcEEEEecCCccccc-------ceeecC-
Q 012007 312 ------T----KH---CLAQVLLKHENAVTA---LAVNQESAVVYCGSS-DGLVNFWECEKHLSHG-------GVLRGH- 366 (473)
Q Consensus 312 ------~----~~---~~~~~~~~~~~~v~~---l~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~-------~~~~~~- 366 (473)
. .. .-......+...|.+ +.+..|...||+++. |+.|++||+++..... ..+..|
T Consensus 189 ~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~s 268 (720)
T KOG0321|consen 189 IYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHS 268 (720)
T ss_pred hhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcc
Confidence 0 00 001112334445555 556678888888887 9999999998643221 111222
Q ss_pred --cceEEEEEec--CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCc--eeEEEEecCCCCCcccccCCCccEEEEE
Q 012007 367 --KMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGP--VKCLAVEEDRDHDHEYHQKGDQRWTVYS 440 (473)
Q Consensus 367 --~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~--V~~l~~~~~~~~~~~~~~~~~~~~~l~s 440 (473)
...+.+|..| |.+|++.+.|+.|++|++.... ..++..+.++... -..-..+|++. ++++
T Consensus 269 krs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s-~sP~~~~sg~~~~sf~vks~lSpd~~-------------~l~S 334 (720)
T KOG0321|consen 269 KRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLS-ISPVAEFSGKLNSSFYVKSELSPDDC-------------SLLS 334 (720)
T ss_pred cceeeeEEEEecCCCCeEEEEecCCcEEEEeccccC-cCchhhccCcccceeeeeeecCCCCc-------------eEec
Confidence 2334555554 7998888889999999998732 3455555555321 12234678887 8999
Q ss_pred eeCCCcEEEEEcCCCCCCcc
Q 012007 441 GSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 441 ~s~Dg~v~iW~i~~~~~~~~ 460 (473)
|+.|...++|.+........
T Consensus 335 gSsd~~ayiw~vs~~e~~~~ 354 (720)
T KOG0321|consen 335 GSSDEQAYIWVVSSPEAPPA 354 (720)
T ss_pred cCCCcceeeeeecCccCChh
Confidence 99999999999998765443
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.5e-22 Score=193.83 Aligned_cols=227 Identities=16% Similarity=0.255 Sum_probs=183.8
Q ss_pred EEEEeeCCCcEEEeeCCc--------cccccccCcccEEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCeeeEEeecccc
Q 012007 135 LLYTGSDSKNIRVWKNLK--------EFSGFKSNSGLVKAIIISGDSN-KIFTGHQDGKIRIWKVSRKNASVHKRVGSLP 205 (473)
Q Consensus 135 ~l~tg~~dg~i~vwd~~~--------~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 205 (473)
+||.|.+||.|.+||..+ .+.....|++.|..+.|++.+. +||+|+.||.|.|||+...+.......
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~---- 157 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGS---- 157 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCC----
Confidence 699999999999998654 2456778999999999999765 999999999999999987554332210
Q ss_pred ccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCC--ceeE
Q 012007 206 TFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINAHDD--AINS 282 (473)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~--~v~~ 282 (473)
....+.|.+++|+. ....|++++.+|.+.|||++..+.+..+..+.. .+..
T Consensus 158 --------------------------~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~ 211 (1049)
T KOG0307|consen 158 --------------------------QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSV 211 (1049)
T ss_pred --------------------------CCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceee
Confidence 01567899999987 456889999999999999999888877765544 4778
Q ss_pred EEEcCCC--EEEEEeCCC---cEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC-CEEEEeCCCCcEEEEecCCc
Q 012007 283 VVAGFDS--LVFTGSADG---TVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES-AVVYCGSSDGLVNFWECEKH 356 (473)
Q Consensus 283 l~~~~~~--~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~ 356 (473)
+.|+|++ .+++++.|. .|.+||+| ......+++..|...|.++.|++.+ ++|++++.|+.|.+|+.+++
T Consensus 212 l~WhP~~aTql~~As~dd~~PviqlWDlR-----~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 212 LAWHPDHATQLLVASGDDSAPVIQLWDLR-----FASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG 286 (1049)
T ss_pred eeeCCCCceeeeeecCCCCCceeEeeccc-----ccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence 9999998 677766654 59999998 4455677789999999999999965 89999999999999999997
Q ss_pred ccccceeecCcceEEEEEec---CCEEEEEeCCCcEEEEecCCC
Q 012007 357 LSHGGVLRGHKMAVLCLAAA---GNLVFSGSADRNICLWRREES 397 (473)
Q Consensus 357 ~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~ 397 (473)
+.+. .+......+..+.|. ...+++++-||.|.||.+.+.
T Consensus 287 Evl~-~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 287 EVLG-ELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred eEee-ecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 6554 444456677777665 558999999999999999864
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-20 Score=157.55 Aligned_cols=244 Identities=13% Similarity=0.148 Sum_probs=169.9
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEE
Q 012007 164 VKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL 243 (473)
Q Consensus 164 V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 243 (473)
..|+.|++.|.+||+|+.||.|.|||+.+........ +|..+|++++|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~ls--------------------------------aH~~pi~sl~W 73 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLS--------------------------------AHVRPITSLCW 73 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhh--------------------------------ccccceeEEEe
Confidence 7899999999999999999999999998876332221 49999999999
Q ss_pred cCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeec
Q 012007 244 NAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLL 321 (473)
Q Consensus 244 ~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 321 (473)
+++|++|++++.|..|.+||+..|.+++.+. ...+|+...|+|.. ..++.-.+..-.+-++... ....+.....
T Consensus 74 S~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~---~h~~Lp~d~d 149 (405)
T KOG1273|consen 74 SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP---KHSVLPKDDD 149 (405)
T ss_pred cCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCC---ceeeccCCCc
Confidence 9999999999999999999999999999887 56789999999875 4444444444444444311 1111111111
Q ss_pred c-CCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCc-ceE--EEEEecCCEEEEEeCCCcEEEEecCCC
Q 012007 322 K-HENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHK-MAV--LCLAAAGNLVFSGSADRNICLWRREES 397 (473)
Q Consensus 322 ~-~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~ 397 (473)
+ .+....+..|.+.|+++++|...|.+.++|..+..... .++-.. ..| .-++..|++|+.-+.|..|+.|++..-
T Consensus 150 ~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~va-s~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di 228 (405)
T KOG1273|consen 150 GDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVA-SFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDI 228 (405)
T ss_pred cccccccccccccCCCCEEEEecCcceEEEEecchheeee-eeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhh
Confidence 1 11122334688999999999999999999998754332 222111 233 445667999999999999999998731
Q ss_pred ------CceeEEEEecC--CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 398 ------GAHSCLAVLTG--HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 398 ------~~~~~~~~~~~--h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
+..++...+.. ..-.-.+++|+.++.. ++++...-..++||.-..+.
T Consensus 229 ~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY------------v~a~s~~aHaLYIWE~~~Gs 283 (405)
T KOG1273|consen 229 DDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY------------VCAGSARAHALYIWEKSIGS 283 (405)
T ss_pred cccCccCCcChhHHHHHHHhhhhhhheeecCCccE------------EEeccccceeEEEEecCCcc
Confidence 11111111111 1223367788888772 44445556789999987764
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.5e-19 Score=145.40 Aligned_cols=278 Identities=16% Similarity=0.239 Sum_probs=190.2
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCC------------ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCe
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNL------------KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNA 195 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~------------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 195 (473)
++++.+++|++|..+|.|-+..+. ..+..+++|.++|+.++|..+ +|++|+ ||.|+-|.......
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~--~Lls~g-dG~V~gw~W~E~~e 93 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD--FLLSGG-DGLVYGWEWNEEEE 93 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh--heeecc-CceEEEeeehhhhh
Confidence 678889999999999999999643 223446889999999999844 788776 59999998865433
Q ss_pred eeEEe-ec--cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEE
Q 012007 196 SVHKR-VG--SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES 272 (473)
Q Consensus 196 ~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~ 272 (473)
....+ .- ..|...+ .-.--.|+++.+.|..+-++.++.|+.++-||+++|+..++
T Consensus 94 s~~~K~lwe~~~P~~~~----------------------~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~ 151 (325)
T KOG0649|consen 94 SLATKRLWEVKIPMQVD----------------------AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQRE 151 (325)
T ss_pred hccchhhhhhcCccccC----------------------cccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEE
Confidence 11100 00 0000000 00234688999999877777777899999999999999999
Q ss_pred eecCCCceeEEEE-cCCCEEEEEeCCCcEEEEeCcccCCCcceeee---eeeccC-CccEEEEEEccCCCEEEEeCCCCc
Q 012007 273 INAHDDAINSVVA-GFDSLVFTGSADGTVKVWRRELQGKGTKHCLA---QVLLKH-ENAVTALAVNQESAVVYCGSSDGL 347 (473)
Q Consensus 273 ~~~~~~~v~~l~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~~~~-~~~v~~l~~~~~~~~l~~~~~dg~ 347 (473)
+++|.+.|.++.- +..+.+++|+.||++++||.++++........ ..+..| ...|-+++.+ ..+|++|+ ...
T Consensus 152 ~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~ 228 (325)
T KOG0649|consen 152 YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPK 228 (325)
T ss_pred EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-CCc
Confidence 9999999999987 55569999999999999999865432111111 112222 2346666654 55787765 467
Q ss_pred EEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcc
Q 012007 348 VNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHE 427 (473)
Q Consensus 348 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~ 427 (473)
+.+|.++..... .+ ..-...+..+.+....+++++..+.|.-|.+.. ..-.....-....+...|+..--.
T Consensus 229 lslwhLrsse~t-~v-fpipa~v~~v~F~~d~vl~~G~g~~v~~~~l~G----vl~a~ip~~s~~c~s~s~~~~p~k--- 299 (325)
T KOG0649|consen 229 LSLWHLRSSEST-CV-FPIPARVHLVDFVDDCVLIGGEGNHVQSYTLNG----VLQANIPVESTACYSASWQTSPIK--- 299 (325)
T ss_pred eeEEeccCCCce-EE-EecccceeEeeeecceEEEeccccceeeeeecc----EEEEeccCCccceeeecccCCceE---
Confidence 999999875443 22 234456667788899999999899999998876 333333333334555555543321
Q ss_pred cccCCCccEEEEEeeCCCcEEEEE
Q 012007 428 YHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 428 ~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
+|-.++....+.|+.
T Consensus 300 ---------~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 300 ---------FISIAGFSNKLHILK 314 (325)
T ss_pred ---------EEEecccceeeeeee
Confidence 566677777777764
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-21 Score=172.63 Aligned_cols=298 Identities=18% Similarity=0.273 Sum_probs=222.9
Q ss_pred cceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCCcc---ccccccCcccEEEEEEeCC--CCEEEEEeCCCeEE
Q 012007 114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE---FSGFKSNSGLVKAIIISGD--SNKIFTGHQDGKIR 186 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~~---~~~~~~h~~~V~~l~~s~~--~~~l~s~~~dg~i~ 186 (473)
.+...|..|.|.|..+.|+ |+.|++|+.|..|.+||.... +.-..+|...|..-.|-|. .+.+++++.||.|+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 4566788999999999997 999999999999999997643 3334568888888888774 46799999999999
Q ss_pred EEeCCCCCeee-EEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC-CCEEEEEeCCCCEEEEEc
Q 012007 187 IWKVSRKNASV-HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRI 264 (473)
Q Consensus 187 vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~v~vwd~ 264 (473)
+=.+....... ...+. .|.++|.-++..|+ -..|++++.|+.+.-+|+
T Consensus 213 ~s~i~~t~~~e~t~rl~------------------------------~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dl 262 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLA------------------------------PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDL 262 (559)
T ss_pred eeeeccccceecceecc------------------------------cccCccceeeecCCCCCcccccccccceeeeee
Confidence 87765443222 22221 39999999999995 457999999999999999
Q ss_pred CCCeeeEEe---ecCCC---ceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCC------cceeeeeeeccCCccEEEE
Q 012007 265 SDCKCLESI---NAHDD---AINSVVAGFDS--LVFTGSADGTVKVWRRELQGKG------TKHCLAQVLLKHENAVTAL 330 (473)
Q Consensus 265 ~~~~~~~~~---~~~~~---~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~------~~~~~~~~~~~~~~~v~~l 330 (473)
+.+.+...+ +.+.. ....++..|.+ .+++++.|..+++||.+.-.+. ...++..........|+++
T Consensus 263 r~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl 342 (559)
T KOG1334|consen 263 RQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGL 342 (559)
T ss_pred ccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeE
Confidence 877554333 23333 56777887775 8999999999999998753332 1111112222344669999
Q ss_pred EEccCCCEEEEeCCCCcEEEEecCC--c----------ccccceeecCcce--EEEEE---ecCCEEEEEeCCCcEEEEe
Q 012007 331 AVNQESAVVYCGSSDGLVNFWECEK--H----------LSHGGVLRGHKMA--VLCLA---AAGNLVFSGSADRNICLWR 393 (473)
Q Consensus 331 ~~~~~~~~l~~~~~dg~i~iwd~~~--~----------~~~~~~~~~~~~~--v~~~~---~~~~~l~s~~~dg~i~iwd 393 (473)
+|+.++.-|+++..|-.|+++.-.. + ......++||... |-.+. |...|+++|+.-|.|.||+
T Consensus 343 ~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 343 VYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred EecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence 9998887788888899999995432 1 1122347788753 34444 4468999999999999999
Q ss_pred cCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 394 REESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 394 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
-.+ .+.+..+.+-...|+||.-+|.-. +||++|.|..|+||.-...+.
T Consensus 423 K~t---~eii~~MegDr~VVNCLEpHP~~P-------------vLAsSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 423 KKT---GEIIRFMEGDRHVVNCLEPHPHLP-------------VLASSGIDHDVKIWTPLTAER 470 (559)
T ss_pred cch---hHHHHHhhcccceEeccCCCCCCc-------------hhhccCCccceeeecCCcccc
Confidence 988 566777777777999999999988 999999999999998755443
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.8e-20 Score=168.60 Aligned_cols=241 Identities=17% Similarity=0.222 Sum_probs=182.6
Q ss_pred cccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeec
Q 012007 155 SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRH 234 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
..+++|++.|.+|...|.|.+|++|+.||+|+||.+.++.++.... .
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~---------------------------------~ 440 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ---------------------------------F 440 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe---------------------------------e
Confidence 3478999999999999999999999999999999999998877665 4
Q ss_pred cCCeeEEEEcCCCC--EEEEEeCCCCEEEEEcCCC-------------------------------------eeeEEeec
Q 012007 235 YDAVSCLSLNAEQG--LLYSGSWDKTLKVWRISDC-------------------------------------KCLESINA 275 (473)
Q Consensus 235 ~~~v~~l~~~~~~~--~l~s~s~dg~v~vwd~~~~-------------------------------------~~~~~~~~ 275 (473)
.+.|.|++|+|.+. .||++-. ..+.|.+..-| .-++..-.
T Consensus 441 d~~I~~vaw~P~~~~~vLAvA~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~ 519 (733)
T KOG0650|consen 441 DSEIRSVAWNPLSDLCVLAVAVG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIK 519 (733)
T ss_pred cceeEEEEecCCCCceeEEEEec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEe
Confidence 45788999988544 4444433 33444432111 01223335
Q ss_pred CCCceeEEEEcCCC-EEEEEeCC---CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEE
Q 012007 276 HDDAINSVVAGFDS-LVFTGSAD---GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFW 351 (473)
Q Consensus 276 ~~~~v~~l~~~~~~-~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iw 351 (473)
|...|..+.|+..| +|++...+ ..|.|.++.. ......+....+.|.++.|+|...+|++++. ..|+||
T Consensus 520 ~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK------~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiY 592 (733)
T KOG0650|consen 520 HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK------RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIY 592 (733)
T ss_pred cCCccceeeeecCCceEEEeccCCCcceEEEEeccc------ccccCchhhcCCceeEEEecCCCceEEEEec-cceEEE
Confidence 77889999999888 77776654 4688888852 2222445556788999999999988888765 679999
Q ss_pred ecCCcccccceeecCcceE--EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccc
Q 012007 352 ECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYH 429 (473)
Q Consensus 352 d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~ 429 (473)
|+..+......+. ....+ +++.+.|.-|+.|+.|+.++.||+.-. .++.+.+.-|...|++++|++.-.
T Consensus 593 dL~kqelvKkL~t-g~kwiS~msihp~GDnli~gs~d~k~~WfDldls--skPyk~lr~H~~avr~Va~H~ryP------ 663 (733)
T KOG0650|consen 593 DLSKQELVKKLLT-GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS--SKPYKTLRLHEKAVRSVAFHKRYP------ 663 (733)
T ss_pred ehhHHHHHHHHhc-CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC--cchhHHhhhhhhhhhhhhhccccc------
Confidence 9987544443333 34444 455577999999999999999999864 467788889999999999999988
Q ss_pred cCCCccEEEEEeeCCCcEEEEEc
Q 012007 430 QKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 430 ~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
+|++|+.||++.|+--
T Consensus 664 -------Lfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 664 -------LFASGSDDGTVIVFHG 679 (733)
T ss_pred -------eeeeecCCCcEEEEee
Confidence 9999999999998854
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-18 Score=146.37 Aligned_cols=269 Identities=16% Similarity=0.201 Sum_probs=189.8
Q ss_pred EEEEEec-----CCEEEEeeC----CCcEEEeeCCcc---cc--ccccCcccEEEEEEeCCC-----CEEEEEeCCCeEE
Q 012007 126 IYSLAAS-----GDLLYTGSD----SKNIRVWKNLKE---FS--GFKSNSGLVKAIIISGDS-----NKIFTGHQDGKIR 186 (473)
Q Consensus 126 V~~~~~~-----g~~l~tg~~----dg~i~vwd~~~~---~~--~~~~h~~~V~~l~~s~~~-----~~l~s~~~dg~i~ 186 (473)
++++.++ +.+||.|+. ...|.|-.+... +. .-..|.-+++.+.|.|+. .+|||++ | .+|
T Consensus 47 lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-D-~LR 124 (364)
T KOG0290|consen 47 LYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS-D-FLR 124 (364)
T ss_pred eeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc-C-eEE
Confidence 4455554 447888864 345666543211 11 113588899999999986 3566643 3 799
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcC
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRIS 265 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~ 265 (473)
+|.+...+........ +.. .....+..++++..|+. +-+++.+.+-|.+..|||++
T Consensus 125 lWri~~ee~~~~~~~~-L~~----------------------~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie 181 (364)
T KOG0290|consen 125 LWRIGDEESRVELQSV-LNN----------------------NKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIE 181 (364)
T ss_pred EEeccCcCCceehhhh-hcc----------------------CcccccCCcccccccccCCcceeEeecccCeEEEEEEe
Confidence 9999753221111100 000 00112677899999998 77899999999999999999
Q ss_pred CCee---eEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC-CEE
Q 012007 266 DCKC---LESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES-AVV 339 (473)
Q Consensus 266 ~~~~---~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l 339 (473)
++.. ...+-+|+..|..++|..++ .+++++.||.+|+||++..+. ..++..-.....+...++|++.. +++
T Consensus 182 ~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH---STIIYE~p~~~~pLlRLswnkqDpnym 258 (364)
T KOG0290|consen 182 TGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH---STIIYEDPSPSTPLLRLSWNKQDPNYM 258 (364)
T ss_pred eccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc---ceEEecCCCCCCcceeeccCcCCchHH
Confidence 8733 55677899999999999865 899999999999999984321 11222222225678889999854 677
Q ss_pred EEeCCC-CcEEEEecCCcccccceeecCcceEEEEEec---CCEEEEEeCCCcEEEEecCCCCc---eeEEEEecCCCCc
Q 012007 340 YCGSSD-GLVNFWECEKHLSHGGVLRGHKMAVLCLAAA---GNLVFSGSADRNICLWRREESGA---HSCLAVLTGHTGP 412 (473)
Q Consensus 340 ~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~h~~~ 412 (473)
|+-..| ..|.|.|++........+.+|...|..+++. ...|++++.|..+.+||+..... ..++..+. -.+.
T Consensus 259 ATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~E 337 (364)
T KOG0290|consen 259 ATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGE 337 (364)
T ss_pred hhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccce
Confidence 765554 4799999998888888999999999888764 78999999999999999986322 12233333 4568
Q ss_pred eeEEEEecCCC
Q 012007 413 VKCLAVEEDRD 423 (473)
Q Consensus 413 V~~l~~~~~~~ 423 (473)
|+.|.|++...
T Consensus 338 VNqi~Ws~~~~ 348 (364)
T KOG0290|consen 338 VNQIQWSSSQP 348 (364)
T ss_pred eeeeeecccCC
Confidence 99999998766
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-19 Score=175.48 Aligned_cols=298 Identities=17% Similarity=0.271 Sum_probs=200.3
Q ss_pred ccceeeeeeecccEEEEEec---CCEEEEeeCCCcEEEeeCCcccc---------ccccCcccEEEEEEeCCCCEEEEEe
Q 012007 113 NGLIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLKEFS---------GFKSNSGLVKAIIISGDSNKIFTGH 180 (473)
Q Consensus 113 ~~~~~~l~~h~~~V~~~~~~---g~~l~tg~~dg~i~vwd~~~~~~---------~~~~h~~~V~~l~~s~~~~~l~s~~ 180 (473)
+.+++.|..|...|..++.+ +.+++||+.||+|++||..+... ++......+.++.+.+.++.+|.++
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence 44578899999998877643 67999999999999999654322 2333467899999999999999999
Q ss_pred CCCeEEEEeCCCCCeeeEEeec-cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCC-EEEEEeCCC
Q 012007 181 QDGKIRIWKVSRKNASVHKRVG-SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQG-LLYSGSWDK 257 (473)
Q Consensus 181 ~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~-~l~s~s~dg 257 (473)
.||.|++.+++..+........ -.+.. ......|.+-+|.. .+. .|+.+..-+
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~------------------------~~~g~vv~m~a~~~~~~S~~lvy~T~~~ 1173 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNL------------------------KKDGVVVSMHAFTAIVQSHVLVYATDLS 1173 (1431)
T ss_pred CCCeEEEEEccccccccceeeeeecccc------------------------cCCCceEEeecccccccceeEEEEEecc
Confidence 9999999999864221111100 00000 00112233334433 233 677888889
Q ss_pred CEEEEEcCCCeeeEEee--cCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc
Q 012007 258 TLKVWRISDCKCLESIN--AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ 334 (473)
Q Consensus 258 ~v~vwd~~~~~~~~~~~--~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 334 (473)
.|..||++....+..++ ...+.|++++.+|.+ +++.|+..|.+.+||++. .........++..+|+.+..+|
T Consensus 1174 ~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF-----~~~i~sw~~P~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1174 RIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF-----RVPILSWEHPARAPIRHVWLCP 1248 (1431)
T ss_pred ceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeec-----CceeecccCcccCCcceEEeec
Confidence 99999998876665554 345789999999987 899999999999999984 3334444556678888888877
Q ss_pred CC---CEEEEe-C-CCCcEEEEecCCcccccceeecCcc-------------------eE-EEEEecCCEEEEEeCCCcE
Q 012007 335 ES---AVVYCG-S-SDGLVNFWECEKHLSHGGVLRGHKM-------------------AV-LCLAAAGNLVFSGSADRNI 389 (473)
Q Consensus 335 ~~---~~l~~~-~-~dg~i~iwd~~~~~~~~~~~~~~~~-------------------~v-~~~~~~~~~l~s~~~dg~i 389 (473)
-. ...+++ + ..+.|.+|++.++............ .+ .++.--+.++.+|+.|..|
T Consensus 1249 ~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kI 1328 (1431)
T KOG1240|consen 1249 TYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKI 1328 (1431)
T ss_pred cCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccce
Confidence 33 344444 3 5778999999876433222211010 11 1222236789999999999
Q ss_pred EEEecCCCCce--------------------------e-------------------EEEE--------ecCCCCceeEE
Q 012007 390 CLWRREESGAH--------------------------S-------------------CLAV--------LTGHTGPVKCL 416 (473)
Q Consensus 390 ~iwd~~~~~~~--------------------------~-------------------~~~~--------~~~h~~~V~~l 416 (473)
+.||....... + .... -..|..+|+++
T Consensus 1329 R~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdm 1408 (1431)
T KOG1240|consen 1329 RKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDM 1408 (1431)
T ss_pred eeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhh
Confidence 99997642110 0 0000 11466778888
Q ss_pred EEecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 417 AVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
++...... +|++++.||.|+||.
T Consensus 1409 a~~~~~q~------------llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1409 ATLKSEQP------------LLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hhhccCcc------------EEEEecCCCeeeecC
Confidence 87766543 899999999999994
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=170.24 Aligned_cols=293 Identities=19% Similarity=0.316 Sum_probs=196.7
Q ss_pred EEEEEecCCEEEEeeCCCcEEEeeCC--ccccccccC---cccEEEEEEeC--CCCEEEEEeCCCeEEEEeCCCCCeeeE
Q 012007 126 IYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSN---SGLVKAIIISG--DSNKIFTGHQDGKIRIWKVSRKNASVH 198 (473)
Q Consensus 126 V~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h---~~~V~~l~~s~--~~~~l~s~~~dg~i~vwd~~~~~~~~~ 198 (473)
+.-+.+-...++++...-.|+|||.. +.+..|..+ ...|+.+++-. |..+|++|+.||.||||+-........
T Consensus 1069 ~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~ 1148 (1387)
T KOG1517|consen 1069 TLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKP 1148 (1387)
T ss_pred eeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCc
Confidence 33444556678888877899999966 334444433 46799998854 446899999999999997543321111
Q ss_pred EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec-CC
Q 012007 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA-HD 277 (473)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~ 277 (473)
..+.......+. ..+..+.=.-+.|.....+|++++.-..|+|||....+++..+.. ..
T Consensus 1149 eLVTaw~~Ls~~--------------------~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~ 1208 (1387)
T KOG1517|consen 1149 ELVTAWSSLSDQ--------------------LPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS 1208 (1387)
T ss_pred eeEEeecccccc--------------------CccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC
Confidence 111111111000 001111124467877777777777788999999998888877764 34
Q ss_pred CceeEEEEcC--CCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCcc--EEEEEEccCCC-EEEEeCCCCcEEEEe
Q 012007 278 DAINSVVAGF--DSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENA--VTALAVNQESA-VVYCGSSDGLVNFWE 352 (473)
Q Consensus 278 ~~v~~l~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--v~~l~~~~~~~-~l~~~~~dg~i~iwd 352 (473)
..|+++.... .+.+++|..||.|++||.+... ....+.....|... |..+.+.+.|- .|++|+.||.|++||
T Consensus 1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~---~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~D 1285 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAP---PDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLD 1285 (1387)
T ss_pred ccceeecccccCCceEEEeecCCceEEeecccCC---ccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEe
Confidence 4566665432 2499999999999999998653 23456677788877 99999999774 499999999999999
Q ss_pred cCCcc-cccceeecCc--c-eEEEE--EecCCEEEEEeCCCcEEEEecCCCCceeEEEE----ecCCCCceeEEEEecCC
Q 012007 353 CEKHL-SHGGVLRGHK--M-AVLCL--AAAGNLVFSGSADRNICLWRREESGAHSCLAV----LTGHTGPVKCLAVEEDR 422 (473)
Q Consensus 353 ~~~~~-~~~~~~~~~~--~-~v~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~h~~~V~~l~~~~~~ 422 (473)
++... ........|. + ..+++ ..+...+|+|+. +.|+||++..... ..+.. +....+.+.|++|+|..
T Consensus 1286 lR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l-~~~k~n~~F~~q~~gs~scL~FHP~~ 1363 (1387)
T KOG1517|consen 1286 LRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL-NIIKYNPGFMGQRIGSVSCLAFHPHR 1363 (1387)
T ss_pred cccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh-cccccCcccccCcCCCcceeeecchh
Confidence 98731 1111112222 2 24444 456889999998 9999999976221 11111 11224568999999998
Q ss_pred CCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 423 DHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 423 ~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
- ++|+|+.|.+|.||...++.
T Consensus 1364 ~-------------llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1364 L-------------LLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred H-------------hhhhccCCceEEEeecCCcC
Confidence 7 89999999999999877654
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-17 Score=155.50 Aligned_cols=272 Identities=13% Similarity=0.213 Sum_probs=173.0
Q ss_pred EEeeCCCcEEEeeCCc-----cccccccCcccEEEEEEeCCCCEEEEEe-CCCeEEEEeCCC-CCeeeEEeeccccccce
Q 012007 137 YTGSDSKNIRVWKNLK-----EFSGFKSNSGLVKAIIISGDSNKIFTGH-QDGKIRIWKVSR-KNASVHKRVGSLPTFKD 209 (473)
Q Consensus 137 ~tg~~dg~i~vwd~~~-----~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~ 209 (473)
++...|+.|.+|++.. .+..+. +.+....++++|++++|++++ .++.|.+|++.. +........
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-------- 76 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-------- 76 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee--------
Confidence 3446789999999741 222332 346678899999999987765 478899999973 222111111
Q ss_pred eEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC-CCCEEEEEcCC-Ce---eeEEeecCCCceeEEE
Q 012007 210 YVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISD-CK---CLESINAHDDAINSVV 284 (473)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg~v~vwd~~~-~~---~~~~~~~~~~~v~~l~ 284 (473)
........++|+|++++|++++. ++.|.+|++.+ +. .+..+. +.....+++
T Consensus 77 -----------------------~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~ 132 (330)
T PRK11028 77 -----------------------PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSAN 132 (330)
T ss_pred -----------------------cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeE
Confidence 02234567999999999998874 78999999964 32 222222 223456778
Q ss_pred EcCCC-EE-EEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC-CCcEEEEecCCc--c-c
Q 012007 285 AGFDS-LV-FTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-DGLVNFWECEKH--L-S 358 (473)
Q Consensus 285 ~~~~~-~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~iwd~~~~--~-~ 358 (473)
++|++ ++ ++...++.|.+||+...+....................++|+|++++++++.. ++.|.+||+... . .
T Consensus 133 ~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~ 212 (330)
T PRK11028 133 IDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIE 212 (330)
T ss_pred eCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEE
Confidence 89987 44 45566799999999742211100000001112344678999999999988876 899999999731 1 1
Q ss_pred ccceeecC------c--ceEEEEEecCCEEEEEeC-CCcEEEEecCCCC-ceeEEEEecCCCCceeEEEEecCCCCCccc
Q 012007 359 HGGVLRGH------K--MAVLCLAAAGNLVFSGSA-DRNICLWRREESG-AHSCLAVLTGHTGPVKCLAVEEDRDHDHEY 428 (473)
Q Consensus 359 ~~~~~~~~------~--~~v~~~~~~~~~l~s~~~-dg~i~iwd~~~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~ 428 (473)
....+..+ . ..-..+++++++|+++.. ++.|.+|++...+ ....+..... ......++|+|+++
T Consensus 213 ~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~----- 286 (330)
T PRK11028 213 CVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGK----- 286 (330)
T ss_pred EEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCC-----
Confidence 11111111 1 112557789999998854 7899999996532 2233333322 12456899999998
Q ss_pred ccCCCccEEEEE-eeCCCcEEEEEcCCC
Q 012007 429 HQKGDQRWTVYS-GSLDKSVKVWRVSEH 455 (473)
Q Consensus 429 ~~~~~~~~~l~s-~s~Dg~v~iW~i~~~ 455 (473)
+|++ ...+++|.+|++...
T Consensus 287 --------~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 287 --------YLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred --------EEEEEEccCCcEEEEEEcCC
Confidence 4554 445999999998643
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-19 Score=160.10 Aligned_cols=203 Identities=16% Similarity=0.188 Sum_probs=165.1
Q ss_pred ccCCeeEEEEcCCC--CEEEEEeCCCCEEEEEcCCC----eeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeC
Q 012007 234 HYDAVSCLSLNAEQ--GLLYSGSWDKTLKVWRISDC----KCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRR 305 (473)
Q Consensus 234 ~~~~v~~l~~~~~~--~~l~s~s~dg~v~vwd~~~~----~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~ 305 (473)
+...|++++|+|.. +++++|...|.|-+||+.+. ..+..+..|..+|.++.|+|.+ .+++.+.||+|++-|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~ 264 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF 264 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence 88999999999954 58899999999999999532 2356677899999999999987 8999999999999999
Q ss_pred cccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEec---CCEEEE
Q 012007 306 ELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA---GNLVFS 382 (473)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s 382 (473)
+... ...+.........+..+.|+.+...++.+..=|...+||+++.......+.-|...|..++.+ ..+|++
T Consensus 265 ~~~i----~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT 340 (498)
T KOG4328|consen 265 EGNI----SEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLAT 340 (498)
T ss_pred cchh----hHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheee
Confidence 7321 122223333456677888888888888888888999999998777666777788888888765 679999
Q ss_pred EeCCCcEEEEecCCCCcee-EEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 383 GSADRNICLWRREESGAHS-CLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 383 ~~~dg~i~iwd~~~~~~~~-~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
++.|++.+|||++...... ++-....|...|.+..|+|.+. .|+|.+.|..|+|||..
T Consensus 341 ~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g-------------tl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 341 ASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG-------------TLLTTCQDNEIRVFDSS 399 (498)
T ss_pred cccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC-------------ceEeeccCCceEEeecc
Confidence 9999999999998744333 3455567999999999999988 69999999999999985
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.3e-19 Score=151.16 Aligned_cols=258 Identities=14% Similarity=0.236 Sum_probs=188.4
Q ss_pred cccCcccEEEEEEeC-----CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeE
Q 012007 157 FKSNSGLVKAIIISG-----DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231 (473)
Q Consensus 157 ~~~h~~~V~~l~~s~-----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (473)
...|+.+|..++|++ +-..+++.|.+ .+.+|+...............+
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~-------------------------- 86 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADE-------------------------- 86 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCC--------------------------
Confidence 345888999999974 22456666655 7888887654422222111111
Q ss_pred eeccCCeeEEEEcCC----CCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeC
Q 012007 232 IRHYDAVSCLSLNAE----QGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRR 305 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~----~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~ 305 (473)
.|......++|+-+ ..+|++|+.-|.|+|.|+.++++...+.+|...|+.|.+.|+. ++++++.|..|++|++
T Consensus 87 -d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI 165 (385)
T KOG1034|consen 87 -DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI 165 (385)
T ss_pred -CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEec
Confidence 15556666667542 4689999999999999999999999999999999999999997 9999999999999999
Q ss_pred cccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccc-------------------------
Q 012007 306 ELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHG------------------------- 360 (473)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~------------------------- 360 (473)
+.. .-.....-..+|...|.++.|+++|.+|++++.|..|++|++.......
T Consensus 166 ~~~---~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp 242 (385)
T KOG1034|consen 166 QTD---VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFP 242 (385)
T ss_pred cCC---eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccc
Confidence 732 2222334567899999999999999999999999999999987311000
Q ss_pred --ceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCC-C----------CceeEEEEecCCCCceeEEEEe--cCCCCC
Q 012007 361 --GVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREE-S----------GAHSCLAVLTGHTGPVKCLAVE--EDRDHD 425 (473)
Q Consensus 361 --~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~-~----------~~~~~~~~~~~h~~~V~~l~~~--~~~~~~ 425 (473)
....-|...|-|+.+-|+++++=+-++.|..|..-. . .....+..+.-....|.-|.|. +-++
T Consensus 243 ~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-- 320 (385)
T KOG1034|consen 243 DFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-- 320 (385)
T ss_pred cccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH--
Confidence 012235566666667799999999999999998721 1 1122344444455566666554 4455
Q ss_pred cccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 426 HEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 426 ~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
+||.|...|.|.+||+...++.
T Consensus 321 -----------~la~gnq~g~v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 321 -----------MLALGNQSGKVYVWDLDNNEPP 342 (385)
T ss_pred -----------HHhhccCCCcEEEEECCCCCCc
Confidence 8999999999999999988774
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.7e-19 Score=157.42 Aligned_cols=244 Identities=13% Similarity=0.233 Sum_probs=187.0
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE
Q 012007 161 SGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 240 (473)
.+.|++|.|+|....|++|+.||.++||.++.........+. -...+|.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~------------------------------l~~fPi~~ 262 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH------------------------------LEKFPIQK 262 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee------------------------------eccCccce
Confidence 478999999999999999999999999999865432211110 04568999
Q ss_pred EEEcCCCC-EEEEEeCCCCEEEEEcCCCeeeE--EeecCC-CceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCccee
Q 012007 241 LSLNAEQG-LLYSGSWDKTLKVWRISDCKCLE--SINAHD-DAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHC 315 (473)
Q Consensus 241 l~~~~~~~-~l~s~s~dg~v~vwd~~~~~~~~--~~~~~~-~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~ 315 (473)
.+|.|+|. .+++++....++.||+.+.+... .+.++. ..+....+++++ +|+..+..|.|.+....+..
T Consensus 263 a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e------ 336 (514)
T KOG2055|consen 263 AEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE------ 336 (514)
T ss_pred eeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh------
Confidence 99999999 89999999999999998876533 233333 345666777877 89999999999999875332
Q ss_pred eeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeec--CcceEEEEEecCCEEEEEeCCCcEEEEe
Q 012007 316 LAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRG--HKMAVLCLAAAGNLVFSGSADRNICLWR 393 (473)
Q Consensus 316 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~s~~~dg~i~iwd 393 (473)
.......++.|..++|+.+++.|++++.+|.|.+||++........... -.+..+|.+.++.|||+|+..|.|.|||
T Consensus 337 -li~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 337 -LITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYD 415 (514)
T ss_pred -hhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEec
Confidence 1223345688999999999999999999999999999986444333222 1234567778999999999999999999
Q ss_pred cCC---CCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEee--CCCcEEEEEcCC
Q 012007 394 REE---SGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS--LDKSVKVWRVSE 454 (473)
Q Consensus 394 ~~~---~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s--~Dg~v~iW~i~~ 454 (473)
.++ ....+++..+..-...|++|+|+++.+ +||.+| .+..+|+=-+.+
T Consensus 416 ~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q-------------iLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 416 GNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ-------------ILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred cchhhccCCCCchhhhhhhheeeeeeeeCcchh-------------hhhhhhhccccceEEEeccc
Confidence 764 234567777777788999999999998 666665 466788877654
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.2e-19 Score=155.71 Aligned_cols=206 Identities=18% Similarity=0.303 Sum_probs=160.0
Q ss_pred eeeeeeecccEEEEEec---CCEEEEeeCCCcEEEeeCC---------ccccccccCcccEEEEEEeCCC-CEEEEEeCC
Q 012007 116 IGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNL---------KEFSGFKSNSGLVKAIIISGDS-NKIFTGHQD 182 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~---g~~l~tg~~dg~i~vwd~~---------~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~d 182 (473)
.-.+.||.+.|+.+.|+ ...||+|++|.+|.||+.. +.+..+.+|...|.-++|+|.. +.|++++.|
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 33567899999998875 6799999999999999743 4566789999999999999964 689999999
Q ss_pred CeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEE
Q 012007 183 GKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVW 262 (473)
Q Consensus 183 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vw 262 (473)
.+|.+|++.+++..... .|.+.|.++.|+.+|.+|++.+.|..|+||
T Consensus 154 n~v~iWnv~tgeali~l---------------------------------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~ 200 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITL---------------------------------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVI 200 (472)
T ss_pred ceEEEEeccCCceeeec---------------------------------CCCCeEEEEEeccCCceeeeecccceeEEE
Confidence 99999999998754433 399999999999999999999999999999
Q ss_pred EcCCCeeeEEeecCCCce-eEEEEcCCCEEEEEe----CCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCC
Q 012007 263 RISDCKCLESINAHDDAI-NSVVAGFDSLVFTGS----ADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESA 337 (473)
Q Consensus 263 d~~~~~~~~~~~~~~~~v-~~l~~~~~~~l~s~~----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 337 (473)
|.++++.+.+-.+|.+.- ..+.|..++.+++.+ .+..+-+||...-... .........+.|.---|.+|..
T Consensus 201 dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP----~~~~elDtSnGvl~PFyD~dt~ 276 (472)
T KOG0303|consen 201 DPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP----IALQELDTSNGVLLPFYDPDTS 276 (472)
T ss_pred cCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCc----ceeEEeccCCceEEeeecCCCC
Confidence 999999999888887632 233444555555544 3778999998643221 2222333445566666788877
Q ss_pred EEE-EeCCCCcEEEEecCCccc
Q 012007 338 VVY-CGSSDGLVNFWECEKHLS 358 (473)
Q Consensus 338 ~l~-~~~~dg~i~iwd~~~~~~ 358 (473)
+++ +|-.|+.|+.|.+.....
T Consensus 277 ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 277 IVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred EEEEEecCCcceEEEEecCCCc
Confidence 665 556799999999876543
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-16 Score=155.87 Aligned_cols=287 Identities=30% Similarity=0.515 Sum_probs=213.5
Q ss_pred eeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCCcc---ccccccCc-ccEEEEEE-eCCCC-EEEEEeC-CCeEEEE
Q 012007 118 SIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE---FSGFKSNS-GLVKAIII-SGDSN-KIFTGHQ-DGKIRIW 188 (473)
Q Consensus 118 ~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~~---~~~~~~h~-~~V~~l~~-s~~~~-~l~s~~~-dg~i~vw 188 (473)
.+..|...|.++.++ +..++.++.|+.+.+|+.... ...+..+. ..+..+.+ .+++. +++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 456788888887765 778999999999999996633 45555544 37777777 78887 5555445 9999999
Q ss_pred eCCC-CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC-CCCEEEEEcCC
Q 012007 189 KVSR-KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISD 266 (473)
Q Consensus 189 d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg~v~vwd~~~ 266 (473)
+... ..... ....|...|..++|+|++..+++++. |+.+++|++..
T Consensus 140 ~~~~~~~~~~--------------------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (466)
T COG2319 140 DLSTPGKLIR--------------------------------TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT 187 (466)
T ss_pred EecCCCeEEE--------------------------------EEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC
Confidence 9987 22211 11248899999999999998888885 99999999999
Q ss_pred CeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC
Q 012007 267 CKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS 344 (473)
Q Consensus 267 ~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~ 344 (473)
+..+..+..|...|.++.+.+++ .+++++.|+.|++||... .......+..|.... ...|++++.++++++.
T Consensus 188 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 261 (466)
T COG2319 188 GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST-----GKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS 261 (466)
T ss_pred CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC-----CcEEeeecCCCCcce-eEeECCCCCEEEEecC
Confidence 88999999999999999999887 344449999999997752 111211566677665 4489999989999999
Q ss_pred CCcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCC
Q 012007 345 DGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDR 422 (473)
Q Consensus 345 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 422 (473)
|+.+++|+............+|...+.++.+ ++..+++++.|+.+.+|+........... ...|...|..+.| ...
T Consensus 262 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~ 339 (466)
T COG2319 262 DGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-LKGHEGPVSSLSF-SPD 339 (466)
T ss_pred CCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-ecccCCceEEEEE-CCC
Confidence 9999999998655422233567777776655 46888889999999999888742222222 3478778999999 532
Q ss_pred -CCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 423 -DHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 423 -~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
.. ++..+..|+.+.+|++....
T Consensus 340 ~~~------------~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 340 GSL------------LVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred CCE------------EEEeecCCCcEEeeecCCCc
Confidence 31 34444688999999998876
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-17 Score=161.17 Aligned_cols=282 Identities=16% Similarity=0.254 Sum_probs=205.4
Q ss_pred EEEEEecCCEEEEeeCCCcEEEeeCC------ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEE
Q 012007 126 IYSLAASGDLLYTGSDSKNIRVWKNL------KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHK 199 (473)
Q Consensus 126 V~~~~~~g~~l~tg~~dg~i~vwd~~------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 199 (473)
+.+++++++++|+|..||.|.+|... .....+.-|...|.+++|+++|.+|++||..|.+.+|.+++++.....
T Consensus 210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLP 289 (792)
T KOG1963|consen 210 CVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLP 289 (792)
T ss_pred eEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccccc
Confidence 45667789999999999999999533 234556779999999999999999999999999999999998733222
Q ss_pred eeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec----
Q 012007 200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA---- 275 (473)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~---- 275 (473)
+ -.+.|..+.++||+.+.+....|..|.+....+......+.+
T Consensus 290 R---------------------------------Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~ 336 (792)
T KOG1963|consen 290 R---------------------------------LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPP 336 (792)
T ss_pred c---------------------------------cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCC
Confidence 2 567899999999999999999999999998866555444432
Q ss_pred -------CCCceeEEEEcC-CCEEEEEeCCCcEEEEeCcccCCCcceeeeeeec------cCCccEEEEEEccCCCEEEE
Q 012007 276 -------HDDAINSVVAGF-DSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLL------KHENAVTALAVNQESAVVYC 341 (473)
Q Consensus 276 -------~~~~v~~l~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~------~~~~~v~~l~~~~~~~~l~~ 341 (473)
..+-.+.+.+.| .+.++..+..|.|.+||+.......+.. +.... .+.-.+++++.+-.|.++++
T Consensus 337 ~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~-v~~~n~~~~~~n~~v~itav~~~~~gs~maT 415 (792)
T KOG1963|consen 337 TPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQ-VCDENYSDGDVNIQVGITAVARSRFGSWMAT 415 (792)
T ss_pred CccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEE-EEeecccCCcceeEEeeeeehhhccceEEEE
Confidence 133456677777 4578888999999999987543221111 11111 22345677888888988887
Q ss_pred eC--------CCC--cEEEEecCCcc----cccceeecCcceEE--EEEe--cCCEEEEEeCCCcEEEEecCC-------
Q 012007 342 GS--------SDG--LVNFWECEKHL----SHGGVLRGHKMAVL--CLAA--AGNLVFSGSADRNICLWRREE------- 396 (473)
Q Consensus 342 ~~--------~dg--~i~iwd~~~~~----~~~~~~~~~~~~v~--~~~~--~~~~l~s~~~dg~i~iwd~~~------- 396 (473)
.- .|| .+++|-..... ....+...|..... ++.. .....++++.||.++||-+..
T Consensus 416 ~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~ 495 (792)
T KOG1963|consen 416 LEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKK 495 (792)
T ss_pred eeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcC
Confidence 53 233 46788654321 22234456766543 3332 234899999999999998832
Q ss_pred CCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 397 SGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 397 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
...+.|...-..|..++++++|+.||. +++.+.|++|.+||..+.
T Consensus 496 ~s~W~c~~i~sy~k~~i~a~~fs~dGs--------------lla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 496 SSNWTCKAIGSYHKTPITALCFSQDGS--------------LLAVSFDDTITIWDYDTK 540 (792)
T ss_pred ccceEEeeeeccccCcccchhhcCCCc--------------EEEEecCCEEEEecCCCh
Confidence 123566666556899999999999997 777788999999999884
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-17 Score=142.75 Aligned_cols=205 Identities=14% Similarity=0.163 Sum_probs=161.5
Q ss_pred cccEEEEEec--CCEEEEeeCCCcEEEeeCC-----ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCC-CCC
Q 012007 123 EGHIYSLAAS--GDLLYTGSDSKNIRVWKNL-----KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVS-RKN 194 (473)
Q Consensus 123 ~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~-----~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~-~~~ 194 (473)
.++|+|.+++ +..+|++.....|.||... +...++..|...|++|+|+|..+.|++|+.|..-+||... .+.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 4678887775 6789999999999999643 5678899999999999999999999999999999999983 333
Q ss_pred eeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee----
Q 012007 195 ASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL---- 270 (473)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~---- 270 (473)
-.. ...++.+..+.+++.|+|.++.|++|+.-..|.||-++...--
T Consensus 90 Wkp------------------------------tlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsK 139 (361)
T KOG1523|consen 90 WKP------------------------------TLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSK 139 (361)
T ss_pred ecc------------------------------ceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhh
Confidence 221 1233358999999999999999999999999999988654322
Q ss_pred EEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCC------------CcceeeeeeeccCCccEEEEEEccCCC
Q 012007 271 ESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGK------------GTKHCLAQVLLKHENAVTALAVNQESA 337 (473)
Q Consensus 271 ~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~------------~~~~~~~~~~~~~~~~v~~l~~~~~~~ 337 (473)
+.-+.+...|.++.|+|++ ++++|+.|+..+++..-..+. .....+........+.|..+.|+|+|.
T Consensus 140 hikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~ 219 (361)
T KOG1523|consen 140 HIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN 219 (361)
T ss_pred hhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC
Confidence 2234567889999999999 888999999999996532111 111122233335678899999999999
Q ss_pred EEEEeCCCCcEEEEecCCcc
Q 012007 338 VVYCGSSDGLVNFWECEKHL 357 (473)
Q Consensus 338 ~l~~~~~dg~i~iwd~~~~~ 357 (473)
.|+-.+.|+.+.+-|.....
T Consensus 220 ~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 220 RLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred EeeEecCCCceEEeecCCCc
Confidence 99999999999999987654
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-18 Score=158.14 Aligned_cols=218 Identities=15% Similarity=0.215 Sum_probs=152.6
Q ss_pred cceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--cccc-ccccCcccEEEEEEeCC--CCEEEEEeCCCeEE
Q 012007 114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFS-GFKSNSGLVKAIIISGD--SNKIFTGHQDGKIR 186 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~-~~~~h~~~V~~l~~s~~--~~~l~s~~~dg~i~ 186 (473)
++-..|.||+|.|.|+.|+ |.+|++|++|-.+.|||.. +.+. .-.+|.+.|.++.|-|. .+.+++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 4567889999999999986 9999999999999999965 3333 34679999999999884 56899999999999
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCC-CEEEEEeCCCCEEEEEcC
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRIS 265 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~s~dg~v~vwd~~ 265 (473)
++|+...+....-.- .......+..|.+.|..|+-.|++ ..+.++++||+|+-+|++
T Consensus 121 lfdl~~~~~~~~d~~----------------------~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiR 178 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHG----------------------MEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIR 178 (758)
T ss_pred EEecccccccccccC----------------------ccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeeccc
Confidence 999986332110000 000112233499999999999988 789999999999999997
Q ss_pred CCee-------e---EEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCC-------cc------eeeeeee
Q 012007 266 DCKC-------L---ESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKG-------TK------HCLAQVL 320 (473)
Q Consensus 266 ~~~~-------~---~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~-------~~------~~~~~~~ 320 (473)
.... . ..+....-...|+.++|.. +|++|+.|-..++||.+...+. .. .+.....
T Consensus 179 Eph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~ 258 (758)
T KOG1310|consen 179 EPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS 258 (758)
T ss_pred CCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec
Confidence 6311 1 1111122346788888876 8999999999999995421110 00 0111111
Q ss_pred ccCC-----------ccEEEEEEccCCCEEEEeCCCCcEEEEec
Q 012007 321 LKHE-----------NAVTALAVNQESAVVYCGSSDGLVNFWEC 353 (473)
Q Consensus 321 ~~~~-----------~~v~~l~~~~~~~~l~~~~~dg~i~iwd~ 353 (473)
.+|- ..++-+.|+|+|.-|++.-..-.|+++|+
T Consensus 259 p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdv 302 (758)
T KOG1310|consen 259 PGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDV 302 (758)
T ss_pred CccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEee
Confidence 1221 12567889999987777666667888875
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-19 Score=162.89 Aligned_cols=263 Identities=19% Similarity=0.289 Sum_probs=181.3
Q ss_pred eeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC----------ccccccccCcccEEEEEEeCCCCEEEEEeCCCeE
Q 012007 118 SIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL----------KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKI 185 (473)
Q Consensus 118 ~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~----------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i 185 (473)
++..|...|.++.+. ...|++|+.||+|++|++. +.+.+|.+|.++|.|+++.+++..+++|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 677788888877764 6689999999999999872 3466799999999999999999999999999999
Q ss_pred EEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 012007 186 RIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS 265 (473)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~ 265 (473)
+.|++.......... -...-.....||++.|+.+++++....|++++.||+|++|+..
T Consensus 369 ~~w~~p~n~dp~ds~----------------------dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~ 426 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSY----------------------DPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT 426 (577)
T ss_pred eeeccCCCCCccccc----------------------CcchhccceeccccceeeeeecccccceeeecCCceEEeeccC
Confidence 999876221110000 0001123445799999999999999999999999999999987
Q ss_pred CCeeeEEeecC--CCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeee----eeeccCCccEEEEEEccCCC
Q 012007 266 DCKCLESINAH--DDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLA----QVLLKHENAVTALAVNQESA 337 (473)
Q Consensus 266 ~~~~~~~~~~~--~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~~~v~~l~~~~~~~ 337 (473)
...+ ..+... .+.-..+.+-... ..++...-+.--+++.+... ...+. .........+..+.++|...
T Consensus 427 ~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s---~~~~~~s~~~~~~~~~~~in~vVs~~~~~ 502 (577)
T KOG0642|consen 427 EESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVS---DLLIFESSASPGPRRYPQINKVVSHPTAD 502 (577)
T ss_pred CcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhh---heeeccccCCCcccccCccceEEecCCCC
Confidence 6655 333221 1222334332222 22222222222233332111 00000 00111224577888999999
Q ss_pred EEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCC
Q 012007 338 VVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHT 410 (473)
Q Consensus 338 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~ 410 (473)
+.+++..|+.|+++|..++... .....|...+.+++ ++|-+|++++.|+.+++|.+.. ..++.....|.
T Consensus 503 ~~~~~hed~~Ir~~dn~~~~~l-~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~---k~~~~es~~~r 573 (577)
T KOG0642|consen 503 ITFTAHEDRSIRFFDNKTGKIL-HSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV---KTCVLESTAHR 573 (577)
T ss_pred eeEecccCCceecccccccccc-hheeeccceecceeecCCCceEEeecCCceeehhhccc---hheeecccccc
Confidence 9999999999999999886544 45567888887766 5689999999999999999977 45665555553
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-19 Score=163.74 Aligned_cols=263 Identities=19% Similarity=0.331 Sum_probs=180.9
Q ss_pred ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeecc
Q 012007 156 GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY 235 (473)
Q Consensus 156 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (473)
++..|...|++++|.+-...|++|+.||.|++|+++.........+ .....+.+|.
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~------------------------epi~tfraH~ 344 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDV------------------------EPILTFRAHE 344 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccce------------------------eeeEEEeccc
Confidence 5667889999999999999999999999999999943211110100 1123344699
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC----------eeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEe
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC----------KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWR 304 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~----------~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd 304 (473)
++|.|+++.+++..+++|+-||+|+.|++... .....+.+|.+.|+.++++... .|++++.||+++.|+
T Consensus 345 gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~ 424 (577)
T KOG0642|consen 345 GPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWE 424 (577)
T ss_pred CceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeec
Confidence 99999999999999999999999999966421 2345678999999999998876 899999999999999
Q ss_pred CcccCCCcceeeeeeeccCCccEEEEEEccCC-CEEEEeCCCCcEEEEecCCcccccceeec---------CcceEEEEE
Q 012007 305 RELQGKGTKHCLAQVLLKHENAVTALAVNQES-AVVYCGSSDGLVNFWECEKHLSHGGVLRG---------HKMAVLCLA 374 (473)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------~~~~v~~~~ 374 (473)
...... +.......| +.-+++.+-... ...++...-+.-.+++.+...... ++.. .........
T Consensus 425 ~~~~~~----~~f~~~~e~-g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~-~~~s~~~~~~~~~~~in~vVs~ 498 (577)
T KOG0642|consen 425 PTEESP----CTFGEPKEH-GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLL-IFESSASPGPRRYPQINKVVSH 498 (577)
T ss_pred cCCcCc----cccCCcccc-CCcceEeeccchhHhhhhhcccccccchhhhhhhhee-eccccCCCcccccCccceEEec
Confidence 753221 111111122 223444443322 122222222222333332211110 1110 111112223
Q ss_pred ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 375 AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 375 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
+.+.+.+++..|+.|+++|..+ ...+.....|...++++++.|++. +|++++.||.|++|++..
T Consensus 499 ~~~~~~~~~hed~~Ir~~dn~~---~~~l~s~~a~~~svtslai~~ng~-------------~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 499 PTADITFTAHEDRSIRFFDNKT---GKILHSMVAHKDSVTSLAIDPNGP-------------YLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred CCCCeeEecccCCceecccccc---cccchheeeccceecceeecCCCc-------------eEEeecCCceeehhhccc
Confidence 5578999999999999999988 677888889999999999999999 899999999999999977
Q ss_pred CCCCccCCCC
Q 012007 455 HAPDLKGLHS 464 (473)
Q Consensus 455 ~~~~~~~~~~ 464 (473)
.....+...+
T Consensus 563 k~~~~es~~~ 572 (577)
T KOG0642|consen 563 KTCVLESTAH 572 (577)
T ss_pred hheeeccccc
Confidence 6655554443
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.8e-18 Score=144.19 Aligned_cols=257 Identities=19% Similarity=0.240 Sum_probs=178.5
Q ss_pred cEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEE
Q 012007 163 LVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS 242 (473)
Q Consensus 163 ~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 242 (473)
-...+.|+|||..|++-+.|..+++|++-.......... .................|...+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~-------------------~~~~~~~~~~r~~eg~tvydy~ 111 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADG-------------------PLNFSKHLSYRYQEGETVYDYC 111 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCC-------------------ccccccceeEEeccCCEEEEEE
Confidence 356789999999999999999999999854321111000 0000011111122344555555
Q ss_pred Ec-------CCCCEEEEEeCCCCEEEEEcCCCeeeEEeec--CCC---ceeEEEEcCCCEEEEEeCCCcEEEEeCc-ccC
Q 012007 243 LN-------AEQGLLYSGSWDKTLKVWRISDCKCLESINA--HDD---AINSVVAGFDSLVFTGSADGTVKVWRRE-LQG 309 (473)
Q Consensus 243 ~~-------~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--~~~---~v~~l~~~~~~~l~s~~~dg~i~vwd~~-~~~ 309 (473)
|- |+..++++.+.+.-|++||.-+|+....+.+ |.+ ...+++|+|||.-+.++....|+++|+. .+.
T Consensus 112 wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr 191 (406)
T KOG2919|consen 112 WYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGR 191 (406)
T ss_pred eeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCC
Confidence 54 5778999999999999999999998877754 332 4568899999955556678999999993 322
Q ss_pred CCcceeee-eeeccCCccEEEEEEccC-CCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeC
Q 012007 310 KGTKHCLA-QVLLKHENAVTALAVNQE-SAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSA 385 (473)
Q Consensus 310 ~~~~~~~~-~~~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~ 385 (473)
........ .-..+..+-|.+++|+|. ...+++|+....+-||.-... .+...+.+|.+.|+.+. .+|+.|++|..
T Consensus 192 ~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~llggh~gGvThL~~~edGn~lfsGaR 270 (406)
T KOG2919|consen 192 DCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCEDGNKLFSGAR 270 (406)
T ss_pred CCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-CceeeecccCCCeeeEEeccCcCeeccccc
Confidence 11111111 113344677899999995 468999999888888876653 44467779999987655 57999999874
Q ss_pred -CCcEEEEecCCCCceeEEEEecCCCC-ceeEEE--EecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 386 -DRNICLWRREESGAHSCLAVLTGHTG-PVKCLA--VEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 386 -dg~i~iwd~~~~~~~~~~~~~~~h~~-~V~~l~--~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
|-.|..||++.. ..++..+..|.+ .=..|. ..|+++ +|++|+.||.|++||+..
T Consensus 271 k~dkIl~WDiR~~--~~pv~~L~rhv~~TNQRI~FDld~~~~-------------~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 271 KDDKILCWDIRYS--RDPVYALERHVGDTNQRILFDLDPKGE-------------ILASGDTDGSVRVWDLKD 328 (406)
T ss_pred CCCeEEEEeehhc--cchhhhhhhhccCccceEEEecCCCCc-------------eeeccCCCccEEEEecCC
Confidence 678999999874 456777777755 223344 446666 899999999999999987
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-17 Score=145.36 Aligned_cols=214 Identities=17% Similarity=0.250 Sum_probs=158.7
Q ss_pred ccccccccCcccEEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceee
Q 012007 152 KEFSGFKSNSGLVKAIIISGD-SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVL 230 (473)
Q Consensus 152 ~~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (473)
+..-.+.+|+++|..++|+|- .+.||+|+.|.+|.||++-.+....... .....
T Consensus 72 ~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt-------------------------epvv~ 126 (472)
T KOG0303|consen 72 ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT-------------------------EPVVE 126 (472)
T ss_pred CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc-------------------------cceEE
Confidence 345567899999999999994 4689999999999999997654322211 12244
Q ss_pred EeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCccc
Q 012007 231 KIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQ 308 (473)
Q Consensus 231 ~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~ 308 (473)
+.+|...|.-++|+| -.+.|++++.|.+|.+||+.+++.+.++. |.+.|.++.|+.+| ++++.+.|..|+|||.+.+
T Consensus 127 L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~ 205 (472)
T KOG0303|consen 127 LYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG 205 (472)
T ss_pred EeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCC
Confidence 557999999999999 45789999999999999999999999988 99999999999998 9999999999999999843
Q ss_pred CCCcceeeeeeeccCCcc-EEEEEEccCCCEEEEeC---CCCcEEEEecCCcccccce--eecCcceEE-EEEecCCEEE
Q 012007 309 GKGTKHCLAQVLLKHENA-VTALAVNQESAVVYCGS---SDGLVNFWECEKHLSHGGV--LRGHKMAVL-CLAAAGNLVF 381 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~--~~~~~~~v~-~~~~~~~~l~ 381 (473)
. ++.....|.+. -..+.|-.++.++-+|. ++..+.+||..+....... +....+..+ -+.++.++++
T Consensus 206 ~------~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivY 279 (472)
T KOG0303|consen 206 T------VVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVY 279 (472)
T ss_pred c------EeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEE
Confidence 3 33334556543 45566777888555553 4778999998764444322 222222222 2234555554
Q ss_pred -EEeCCCcEEEEecCCC
Q 012007 382 -SGSADRNICLWRREES 397 (473)
Q Consensus 382 -s~~~dg~i~iwd~~~~ 397 (473)
+|-.|+.|+.|.+...
T Consensus 280 l~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 280 LCGKGDSSIRYFEITNE 296 (472)
T ss_pred EEecCCcceEEEEecCC
Confidence 5567999999999874
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-17 Score=140.97 Aligned_cols=206 Identities=19% Similarity=0.235 Sum_probs=157.8
Q ss_pred eccCCeeEEEEcCCC-----CEEEEEeCCCCEEEEEcCC--Cee--eEEe-----ecCCCceeEEEEcCCC--EEEEEeC
Q 012007 233 RHYDAVSCLSLNAEQ-----GLLYSGSWDKTLKVWRISD--CKC--LESI-----NAHDDAINSVVAGFDS--LVFTGSA 296 (473)
Q Consensus 233 ~~~~~v~~l~~~~~~-----~~l~s~s~dg~v~vwd~~~--~~~--~~~~-----~~~~~~v~~l~~~~~~--~l~s~~~ 296 (473)
.|.-+++.+.|.|+. .+|++.+ ..+++|.+.. .+. ...+ ..+..++++..|+.-. ++.+.+-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 488899999999976 3566555 4799999863 221 1111 2356788999987654 8999999
Q ss_pred CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC-CEEEEeCCCCcEEEEecCCcccccceeecC--cceEEEE
Q 012007 297 DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES-AVVYCGSSDGLVNFWECEKHLSHGGVLRGH--KMAVLCL 373 (473)
Q Consensus 297 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~~ 373 (473)
|-+..|||++.+. .......+..|...|..++|..++ +++++.+.||.|++||++.......++... ..+.+.+
T Consensus 172 DTTCTiWdie~~~---~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRL 248 (364)
T KOG0290|consen 172 DTTCTIWDIETGV---SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRL 248 (364)
T ss_pred cCeEEEEEEeecc---ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceee
Confidence 9999999998541 233456788999999999999865 688999999999999998743222222221 3455667
Q ss_pred Eec---CCEEEEEeCC-CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEE
Q 012007 374 AAA---GNLVFSGSAD-RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKV 449 (473)
Q Consensus 374 ~~~---~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~i 449 (473)
+++ .+++|+-..| ..|.|.|++.. ..++..+.+|.+.|++|+|.|.... .|+|+|+|..+.|
T Consensus 249 swnkqDpnymATf~~dS~~V~iLDiR~P--~tpva~L~~H~a~VNgIaWaPhS~~------------hictaGDD~qali 314 (364)
T KOG0290|consen 249 SWNKQDPNYMATFAMDSNKVVILDIRVP--CTPVARLRNHQASVNGIAWAPHSSS------------HICTAGDDCQALI 314 (364)
T ss_pred ccCcCCchHHhhhhcCCceEEEEEecCC--CcceehhhcCcccccceEecCCCCc------------eeeecCCcceEEE
Confidence 764 6788887665 46999999975 5788999999999999999999875 7999999999999
Q ss_pred EEcCCCCC
Q 012007 450 WRVSEHAP 457 (473)
Q Consensus 450 W~i~~~~~ 457 (473)
||+.....
T Consensus 315 WDl~q~~~ 322 (364)
T KOG0290|consen 315 WDLQQMPR 322 (364)
T ss_pred Eecccccc
Confidence 99987543
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-17 Score=157.83 Aligned_cols=274 Identities=14% Similarity=0.140 Sum_probs=194.2
Q ss_pred CCcEEEeeCCcccc--ccccCcccEEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCc
Q 012007 142 SKNIRVWKNLKEFS--GFKSNSGLVKAIIISGDS-NKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPK 218 (473)
Q Consensus 142 dg~i~vwd~~~~~~--~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (473)
++.+.||++..... ....-...|.|++|+|.. ++|+.|..+|.|.+||+..+.........
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls---------------- 284 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS---------------- 284 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccc----------------
Confidence 34799999775421 122246789999999854 67888888999999999887643211110
Q ss_pred ceEEEeecceeeEeeccCCeeEEEEcCCC--CEEEEEeCCCCEEEEEcCCCee-e-----EEee------cCCCceeEEE
Q 012007 219 NYVEVRRNRSVLKIRHYDAVSCLSLNAEQ--GLLYSGSWDKTLKVWRISDCKC-L-----ESIN------AHDDAINSVV 284 (473)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~s~s~dg~v~vwd~~~~~~-~-----~~~~------~~~~~v~~l~ 284 (473)
.....|..+|..+.|..+. .-+++++.||.|..|+++.-.. . .... .....++++.
T Consensus 285 ----------~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~ 354 (555)
T KOG1587|consen 285 ----------ALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLK 354 (555)
T ss_pred ----------cccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEe
Confidence 1112399999999997744 4599999999999998864322 1 1111 1224678888
Q ss_pred EcCCC--EEEEEeCCCcEEEEeCcccCCC--cceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccc
Q 012007 285 AGFDS--LVFTGSADGTVKVWRRELQGKG--TKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHG 360 (473)
Q Consensus 285 ~~~~~--~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 360 (473)
|.+.. .++.|+.+|.|.--+....... ...........|.+.|+++.++|-+..++..+.|.+|+||...-...+.
T Consensus 355 F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl 434 (555)
T KOG1587|consen 355 FEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPL 434 (555)
T ss_pred eccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcc
Confidence 87765 8999999999987443321110 1112344567789999999999976544444449999999987434555
Q ss_pred ceeecCcceEEEEEec---CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEE
Q 012007 361 GVLRGHKMAVLCLAAA---GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWT 437 (473)
Q Consensus 361 ~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~ 437 (473)
..+..+...+++++|+ ...|+++..||.|.+||+.... ..++.....+....+.+.|++.++ +
T Consensus 435 ~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~-~~Pv~s~~~~~~~l~~~~~s~~g~-------------~ 500 (555)
T KOG1587|consen 435 LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD-EEPVLSQKVCSPALTRVRWSPNGK-------------L 500 (555)
T ss_pred hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc-cCCcccccccccccceeecCCCCc-------------E
Confidence 5666677778777776 5689999999999999998633 345555555567778889999888 8
Q ss_pred EEEeeCCCcEEEEEcCCC
Q 012007 438 VYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 438 l~s~s~Dg~v~iW~i~~~ 455 (473)
|+.|...|.+.+|++...
T Consensus 501 lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 501 LAVGDANGTTHILKLSES 518 (555)
T ss_pred EEEecCCCcEEEEEcCch
Confidence 999999999999999754
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-16 Score=152.48 Aligned_cols=250 Identities=28% Similarity=0.495 Sum_probs=195.1
Q ss_pred cccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-eeeEEeeccccccceeEeecCCCcceEEEeecceeeEee
Q 012007 155 SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKN-ASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (473)
.....|...|.++.+.+.+..++.++.|+.+.+|+..... ........
T Consensus 59 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~------------------------------- 107 (466)
T COG2319 59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGL------------------------------- 107 (466)
T ss_pred heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEecc-------------------------------
Confidence 3566789999999999999999999999999999998775 21111110
Q ss_pred ccCCeeEEEE-cCCCC-EEEEEeC-CCCEEEEEcCC-CeeeEEeecCCCceeEEEEcCCC-EEEEEeC-CCcEEEEeCcc
Q 012007 234 HYDAVSCLSL-NAEQG-LLYSGSW-DKTLKVWRISD-CKCLESINAHDDAINSVVAGFDS-LVFTGSA-DGTVKVWRREL 307 (473)
Q Consensus 234 ~~~~v~~l~~-~~~~~-~l~s~s~-dg~v~vwd~~~-~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~-dg~i~vwd~~~ 307 (473)
+...+..+.+ .+++. .++..+. |+.+.+||... ......+..|...|..+.+++++ .+++++. |+.+++|++..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (466)
T COG2319 108 HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT 187 (466)
T ss_pred CCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC
Confidence 1135666666 77777 5555444 99999999988 88888999999999999999998 6777775 99999999863
Q ss_pred cCCCcceeeeeeeccCCccEEEEEEccCCC-EEEEeCCCCcEEEEecCCcccccceeecCcce-EEEEEecCCEEEEEeC
Q 012007 308 QGKGTKHCLAQVLLKHENAVTALAVNQESA-VVYCGSSDGLVNFWECEKHLSHGGVLRGHKMA-VLCLAAAGNLVFSGSA 385 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~l~s~~~ 385 (473)
......+..|...|.+++|+|++. ++++++.|+.|++||..........+.+|... +..+++++.++++++.
T Consensus 188 ------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (466)
T COG2319 188 ------GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSS 261 (466)
T ss_pred ------CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecC
Confidence 234455666999999999999998 55555999999999887543333246666665 5577888889999999
Q ss_pred CCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 386 DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 386 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
|+.+++|+...... .+..+.+|...|.++.|.|++. .+++++.|+.+++|++....
T Consensus 262 d~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~-------------~~~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 262 DGTIRLWDLRSSSS--LLRTLSGHSSSVLSVAFSPDGK-------------LLASGSSDGTVRLWDLETGK 317 (466)
T ss_pred CCcEEEeeecCCCc--EEEEEecCCccEEEEEECCCCC-------------EEEEeeCCCcEEEEEcCCCc
Confidence 99999999987433 2333478899999999999776 67779999999999887654
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.9e-18 Score=141.98 Aligned_cols=208 Identities=19% Similarity=0.270 Sum_probs=159.7
Q ss_pred eccCCeeEEEEcC-CCCEEEEEeCC-------CCEEEEEcCCC---------eeeEEee-cCCCceeEEEEcCCCEEEEE
Q 012007 233 RHYDAVSCLSLNA-EQGLLYSGSWD-------KTLKVWRISDC---------KCLESIN-AHDDAINSVVAGFDSLVFTG 294 (473)
Q Consensus 233 ~~~~~v~~l~~~~-~~~~l~s~s~d-------g~v~vwd~~~~---------~~~~~~~-~~~~~v~~l~~~~~~~l~s~ 294 (473)
.|.+.|..|+-+| +...|+++..+ ..+.||.+... +++..+. .+-+.|.|+.|.|++.-+.+
T Consensus 61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klas 140 (370)
T KOG1007|consen 61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLAS 140 (370)
T ss_pred cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEE
Confidence 4788999999999 55666666542 24779988532 3344444 45568999999998844444
Q ss_pred eCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc--CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEE
Q 012007 295 SADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ--ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLC 372 (473)
Q Consensus 295 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 372 (473)
-.|..|.+|++....+.....+......+....++-+|+| +++.+++. .|+++..||+++..+...+...|...+..
T Consensus 141 m~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrd 219 (370)
T KOG1007|consen 141 MDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRD 219 (370)
T ss_pred eccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeee
Confidence 4599999999985543222222223334667788889998 67777665 58999999999988887888889888988
Q ss_pred EEecC---CEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEE
Q 012007 373 LAAAG---NLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKV 449 (473)
Q Consensus 373 ~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~i 449 (473)
+.++. .+|++|+.||.|+|||.+.. ..++..+.+|...|.++.|+|.... +|++||.|..|.+
T Consensus 220 lDfNpnkq~~lvt~gDdgyvriWD~R~t--k~pv~el~~HsHWvW~VRfn~~hdq------------LiLs~~SDs~V~L 285 (370)
T KOG1007|consen 220 LDFNPNKQHILVTCGDDGYVRIWDTRKT--KFPVQELPGHSHWVWAVRFNPEHDQ------------LILSGGSDSAVNL 285 (370)
T ss_pred ccCCCCceEEEEEcCCCccEEEEeccCC--CccccccCCCceEEEEEEecCccce------------EEEecCCCceeEE
Confidence 88763 47999999999999999874 5688999999999999999998764 8999999999999
Q ss_pred EEcCCC
Q 012007 450 WRVSEH 455 (473)
Q Consensus 450 W~i~~~ 455 (473)
|....-
T Consensus 286 sca~sv 291 (370)
T KOG1007|consen 286 SCASSV 291 (370)
T ss_pred Eecccc
Confidence 987653
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-19 Score=171.59 Aligned_cols=252 Identities=21% Similarity=0.350 Sum_probs=198.7
Q ss_pred ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeE
Q 012007 152 KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231 (473)
Q Consensus 152 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (473)
+.++.+.+|..+|+|+.|...|.++++|+.|..++||..++..+.....
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r------------------------------- 229 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR------------------------------- 229 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCC-------------------------------
Confidence 4466788999999999999999999999999999999988776543322
Q ss_pred eeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCC
Q 012007 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
||...|+.++.+.+..++++++.|..|++|.+.++.++..+.+|.+.|++|+|+|-. +.+.||++++||.+....
T Consensus 230 -Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~- 304 (1113)
T KOG0644|consen 230 -GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPR- 304 (1113)
T ss_pred -CCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEecccccccc-
Confidence 599999999999999999999999999999999999999999999999999999865 788999999999873211
Q ss_pred cceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcce---EEEEEecCCEEEEEeCCCc
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMA---VLCLAAAGNLVFSGSADRN 388 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---v~~~~~~~~~l~s~~~dg~ 388 (473)
...+.-.......-+.++.|...+.-+++++.|+.-..|.+..... +... ++..+-...+.+++-.+-.
T Consensus 305 -~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~-------~~~~lif~t~ssd~~~~~~~ar~~~~ 376 (1113)
T KOG0644|consen 305 -IYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW-------RSNLLIFVTRSSDLSSIVVTARNDHR 376 (1113)
T ss_pred -ccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhh-------hccceEEEeccccccccceeeeeeeE
Confidence 1111111112235567778888888899999999998887653211 1111 1111111367777888889
Q ss_pred EEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCC
Q 012007 389 ICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGL 462 (473)
Q Consensus 389 i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~ 462 (473)
+++|++.+ +.++..+.+|...+..+.++|-+.. +..+++.||...|||+-.+.+.....
T Consensus 377 ~~vwnl~~---g~l~H~l~ghsd~~yvLd~Hpfn~r------------i~msag~dgst~iwdi~eg~pik~y~ 435 (1113)
T KOG0644|consen 377 LCVWNLYT---GQLLHNLMGHSDEVYVLDVHPFNPR------------IAMSAGYDGSTIIWDIWEGIPIKHYF 435 (1113)
T ss_pred eeeeeccc---chhhhhhcccccceeeeeecCCCcH------------hhhhccCCCceEeeecccCCcceeee
Confidence 99999998 5778888999999999999998874 67899999999999999887654433
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9e-19 Score=167.06 Aligned_cols=279 Identities=18% Similarity=0.270 Sum_probs=202.2
Q ss_pred cceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEe
Q 012007 114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd 189 (473)
+.+..|.+|-..|+|..+| |.++++|++|..|+||... .++....||.+.|+.++.+.+..++++++.|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 4677889999999999998 8999999999999999754 67889999999999999999999999999999999999
Q ss_pred CCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee
Q 012007 190 VSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
+..+..+... .+|+++|++|+|+|-. +.+.||++++||.+ ...
T Consensus 261 l~~~~pvsvL--------------------------------rghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~ 303 (1113)
T KOG0644|consen 261 LPDGAPVSVL--------------------------------RGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEP 303 (1113)
T ss_pred cCCCchHHHH--------------------------------hccccceeeeccCccc----cCCCCCceEecccc-ccc
Confidence 9887644322 3699999999999944 77889999999987 121
Q ss_pred eEEe----ec-CCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC-CCEEEEe
Q 012007 270 LESI----NA-HDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE-SAVVYCG 342 (473)
Q Consensus 270 ~~~~----~~-~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~ 342 (473)
+... +. ..+.+..+.+...+ .+++++.|+.-..|..... ..+...+.-+.++.+ ..+.+++
T Consensus 304 ~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l------------~~~~~~lif~t~ssd~~~~~~~a 371 (1113)
T KOG0644|consen 304 RIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL------------AWRSNLLIFVTRSSDLSSIVVTA 371 (1113)
T ss_pred cccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHh------------hhhccceEEEeccccccccceee
Confidence 1111 11 22344455554444 7899999999999876421 111222222222212 2456666
Q ss_pred CCCCcEEEEecCCcccccceeecCcceEEEEEe---cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEe
Q 012007 343 SSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA---AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVE 419 (473)
Q Consensus 343 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~ 419 (473)
-.+-.+.+|++.++.. ...+.+|...+..+.. +.....+++.||.+.|||+-.+-+.+... .+| +.+..-+|+
T Consensus 372 r~~~~~~vwnl~~g~l-~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~--~gh-~kl~d~kFS 447 (1113)
T KOG0644|consen 372 RNDHRLCVWNLYTGQL-LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF--IGH-GKLVDGKFS 447 (1113)
T ss_pred eeeeEeeeeecccchh-hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee--ccc-ceeeccccC
Confidence 6777899999987643 3466677766665553 46677889999999999998743322222 454 567788999
Q ss_pred cCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 420 EDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
++|. -++....-|.+.|.....++..
T Consensus 448 qdgt-------------s~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 448 QDGT-------------SIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred CCCc-------------eEecCCCCCceEEeccCCCccc
Confidence 9998 4666666778888877665543
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=155.08 Aligned_cols=245 Identities=17% Similarity=0.202 Sum_probs=175.3
Q ss_pred CCCEEEE--EeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCC
Q 012007 172 DSNKIFT--GHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQG 248 (473)
Q Consensus 172 ~~~~l~s--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~ 248 (473)
+..+++. ++..|.|-||++..........+..+ -....|+.+.|+| |..
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l----------------------------~Ngt~vtDl~WdPFD~~ 641 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL----------------------------FNGTLVTDLHWDPFDDE 641 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCCCccccccc----------------------------ccCceeeecccCCCChH
Confidence 4445554 45678999999976543222111110 1556799999999 778
Q ss_pred EEEEEeCCCCEEEEEcCCC-------eeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeee
Q 012007 249 LLYSGSWDKTLKVWRISDC-------KCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQV 319 (473)
Q Consensus 249 ~l~s~s~dg~v~vwd~~~~-------~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 319 (473)
.|++++.||.|++|.+..+ .+...+..|...|..+.|+|-. .|++++.|-+|++||+.... ....
T Consensus 642 rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~------~~~~ 715 (1012)
T KOG1445|consen 642 RLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK------LYSR 715 (1012)
T ss_pred HeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh------hhhe
Confidence 9999999999999998653 3456778999999999999864 89999999999999997432 4567
Q ss_pred eccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccccee---ecCcceEEEEEecCCEEEEEeCCC----cEEEE
Q 012007 320 LLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVL---RGHKMAVLCLAAAGNLVFSGSADR----NICLW 392 (473)
Q Consensus 320 ~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~l~s~~~dg----~i~iw 392 (473)
+.+|.+.|..++|+|+|+.+++.+.||+|++|+.++.......- .+..+.-.-|..+|+++++.+.|. .|.+|
T Consensus 716 l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y 795 (1012)
T KOG1445|consen 716 LVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMY 795 (1012)
T ss_pred eccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhh
Confidence 88999999999999999999999999999999998765554332 234455567888999999888764 58889
Q ss_pred ecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCC
Q 012007 393 RREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGL 462 (473)
Q Consensus 393 d~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~ 462 (473)
|..+-. ...+.+ ..+...|.-- .-+.+.|...+|++|-.|..|.+|++-...+-+..+
T Consensus 796 ~Aq~l~-~~pl~t--------~~lDvaps~L---vP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl 853 (1012)
T KOG1445|consen 796 DAQTLD-LRPLYT--------QVLDVAPSPL---VPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPL 853 (1012)
T ss_pred hhhhcc-CCccee--------eeecccCccc---cccccCCCceEEEecCCCceEEEEEecCCCceeeec
Confidence 877621 112221 1122121100 001122333489999999999999998776655433
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-17 Score=144.78 Aligned_cols=257 Identities=15% Similarity=0.199 Sum_probs=183.9
Q ss_pred cccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeec
Q 012007 155 SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRH 234 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
+.+.+|.+.|++|.|+.++++|++|+.|..+++|+++..-.....+ .+ .+..-.|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~K--PI-----------------------~~~~~~H 104 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPK--PI-----------------------GVMEHPH 104 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCC--Cc-----------------------eeccCcc
Confidence 4567899999999999999999999999999999986432111100 00 0001127
Q ss_pred cCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec--CCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCC
Q 012007 235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA--HDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 235 ~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
...|.|++|.....+|++|..+++|.+.|+++.+.+..+.. ..+.|..+..+|.. .|++.+.++.|.+||.+.....
T Consensus 105 ~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~ 184 (609)
T KOG4227|consen 105 RSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNP 184 (609)
T ss_pred ccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCC
Confidence 78999999999999999999999999999999998877752 23589999888865 8999999999999999854321
Q ss_pred cceeeeeeeccCCccEEEEEEccCC-CEEEEeCCCCcEEEEecCCccccccee---ecCcc-----eEEEEEecCCEEEE
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQES-AVVYCGSSDGLVNFWECEKHLSHGGVL---RGHKM-----AVLCLAAAGNLVFS 382 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~-----~v~~~~~~~~~l~s 382 (473)
.. .............+.|+|.. .+|++.+..+-+.+||.+......... .+-.. --.-|+++|+.|++
T Consensus 185 ~~---~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~ms 261 (609)
T KOG4227|consen 185 IS---LVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMS 261 (609)
T ss_pred Cc---eeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehh
Confidence 11 11223344567888999965 678888888999999998654332211 11111 11345677888888
Q ss_pred EeCCCcEEEEecCCCCceeEEEEecCC-------CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 383 GSADRNICLWRREESGAHSCLAVLTGH-------TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 383 ~~~dg~i~iwd~~~~~~~~~~~~~~~h-------~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
--....-.+||+.+. .|...-..| ...+.+++|..+. -+++|+.+-.|++|++...
T Consensus 262 iRR~~~P~~~D~~S~---R~~V~k~D~N~~GY~N~~T~KS~~F~~D~--------------~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 262 IRRGKCPLYFDFISQ---RCFVLKSDHNPNGYCNIKTIKSMTFIDDY--------------TVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred hhccCCCEEeeeecc---cceeEeccCCCCcceeeeeeeeeeeecce--------------eeeccCcccceEEEecCCC
Confidence 776666778888762 222111122 2357888888776 4999999999999999754
Q ss_pred C
Q 012007 456 A 456 (473)
Q Consensus 456 ~ 456 (473)
.
T Consensus 325 ~ 325 (609)
T KOG4227|consen 325 N 325 (609)
T ss_pred c
Confidence 3
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=155.62 Aligned_cols=238 Identities=14% Similarity=0.198 Sum_probs=181.3
Q ss_pred ccceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 113 NGLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 113 ~~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
+++..+|++|.+.|+|++++ |+.+|+|+.|..|.||+..-+-..-..|...|.|+.|+|-...|++|+-. ..-+|..
T Consensus 43 G~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~ 121 (1081)
T KOG1538|consen 43 GTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSP 121 (1081)
T ss_pred cccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchh-hccccCh
Confidence 46789999999999999975 99999999999999998653222233599999999999999999999875 4678987
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL 270 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~ 270 (473)
+........ ....|.+++|..||.+|+.|-.+|+|.+-+- +++..
T Consensus 122 ~qK~V~K~k----------------------------------ss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek 166 (1081)
T KOG1538|consen 122 EQKSVSKHK----------------------------------SSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEK 166 (1081)
T ss_pred hhhhHHhhh----------------------------------hheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcc
Confidence 765433221 3457889999999999999999999999864 44443
Q ss_pred EEee---cCCCceeEEEEcCCC------EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEE
Q 012007 271 ESIN---AHDDAINSVVAGFDS------LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC 341 (473)
Q Consensus 271 ~~~~---~~~~~v~~l~~~~~~------~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~ 341 (473)
..+. +...+|++++|+|.. .+++.....++.++.+.... +.....-.-...|+.+.++|.+++.
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~-------Igk~r~L~FdP~CisYf~NGEy~Li 239 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ-------IGKDRALNFDPCCISYFTNGEYILL 239 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee-------ecccccCCCCchhheeccCCcEEEE
Confidence 3333 467899999998863 78888888888888875211 1111222334578999999999999
Q ss_pred eCCCCcEEEEecCCcccccceeecCcceE--EEEEecCCEEEEEeCCCcEEEEecC
Q 012007 342 GSSDGLVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSADRNICLWRRE 395 (473)
Q Consensus 342 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~ 395 (473)
|+.|+.+++|..+. ..+ ..+......| ..+.|++++++.|+.||+|..|++.
T Consensus 240 GGsdk~L~~fTR~G-vrL-GTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 240 GGSDKQLSLFTRDG-VRL-GTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ccCCCceEEEeecC-eEE-eeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 99999999997553 222 2333344455 4456899999999999999999865
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.3e-17 Score=155.47 Aligned_cols=235 Identities=12% Similarity=0.051 Sum_probs=162.7
Q ss_pred CCcEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCC---CeEEEEeCCCCCeeeEEeeccccccceeEeecCCC
Q 012007 142 SKNIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQD---GKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNP 217 (473)
Q Consensus 142 dg~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (473)
+..|.+||.. .....+..|...+...+|+|||++|+.++.+ ..|++||+.+++......
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~----------------- 245 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS----------------- 245 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-----------------
Confidence 4689999865 3345566788889999999999999987654 369999998765322211
Q ss_pred cceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-CCCCEEEE--EcCCCeeeEEeecCCCceeEEEEcCCC-EEE-
Q 012007 218 KNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVW--RISDCKCLESINAHDDAINSVVAGFDS-LVF- 292 (473)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~v~vw--d~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~- 292 (473)
.......++|+|||+.|+.++ .+|.+.|| |+.+++ +..+..+...+....|+|++ .|+
T Consensus 246 ----------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f 308 (429)
T PRK01742 246 ----------------FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILF 308 (429)
T ss_pred ----------------CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEE
Confidence 112234689999999888765 67876555 665554 44555566778889999998 444
Q ss_pred EEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEE
Q 012007 293 TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLC 372 (473)
Q Consensus 293 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 372 (473)
+...+|...||++..... .. ..+ .+.. ....|+|+|++|+..+.++ +.+||+.++... .....+......
T Consensus 309 ~s~~~g~~~I~~~~~~~~--~~---~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~-~lt~~~~~~~~~ 378 (429)
T PRK01742 309 TSDRSGSPQVYRMSASGG--GA---SLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTE-VLSSTFLDESPS 378 (429)
T ss_pred EECCCCCceEEEEECCCC--Ce---EEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE-EecCCCCCCCce
Confidence 555678899998764322 11 111 2332 4578999999998887765 556998765432 111222334456
Q ss_pred EEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecC
Q 012007 373 LAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEED 421 (473)
Q Consensus 373 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 421 (473)
++|+|++|+.++.++.+.+|.+.. .....+..+..|.+.+...+|+|-
T Consensus 379 ~sPdG~~i~~~s~~g~~~~l~~~~-~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 379 ISPNGIMIIYSSTQGLGKVLQLVS-ADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ECCCCCEEEEEEcCCCceEEEEEE-CCCCceEEccCCCCCCCCcccCCC
Confidence 899999999999999988887643 114567777888888999999985
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-17 Score=150.99 Aligned_cols=253 Identities=11% Similarity=0.156 Sum_probs=171.4
Q ss_pred cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEe
Q 012007 153 EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKI 232 (473)
Q Consensus 153 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (473)
....+.+|++.|+|++|+.+|.+|++|+.|-.+.|||.-..+...... .
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~-------------------------------T 90 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS-------------------------------T 90 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee-------------------------------c
Confidence 345788999999999999999999999999999999987655443333 2
Q ss_pred eccCCeeEEEEcC--CCCEEEEEeCCCCEEEEEcCC----------CeeeEEeecCCCceeEEEEcCCC--EEEEEeCCC
Q 012007 233 RHYDAVSCLSLNA--EQGLLYSGSWDKTLKVWRISD----------CKCLESINAHDDAINSVVAGFDS--LVFTGSADG 298 (473)
Q Consensus 233 ~~~~~v~~l~~~~--~~~~l~s~s~dg~v~vwd~~~----------~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg 298 (473)
+|...|.+++|-| +..++++|..|..|+++|+.. ......+..|...|..|+..|++ .+.+++.||
T Consensus 91 gHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDG 170 (758)
T KOG1310|consen 91 GHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDG 170 (758)
T ss_pred ccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCc
Confidence 5999999999999 567899999999999999974 23345567788999999998887 889999999
Q ss_pred cEEEEeCcccCCCc--c--eeeeeeeccCCccEEEEEEccCC-CEEEEeCCCCcEEEEecCCcccccceeecCcceEEEE
Q 012007 299 TVKVWRRELQGKGT--K--HCLAQVLLKHENAVTALAVNQES-AVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCL 373 (473)
Q Consensus 299 ~i~vwd~~~~~~~~--~--~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 373 (473)
+|+-+|++...... . ...........-...++.++|.. .+|++|+.|-..++||.+...+....- .....
T Consensus 171 tirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~-----~~~~~ 245 (758)
T KOG1310|consen 171 TIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSD-----GTMNT 245 (758)
T ss_pred ceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCC-----ccccC
Confidence 99999998522111 0 00111122233456789999954 789999999999999975432221110 00000
Q ss_pred EecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 374 AAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 374 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
.+- -.++.|+-|...... ..-..+......++-+.|+|+|.. +|++-+.+ .|+++++.
T Consensus 246 ~pp-------~~~~cv~yf~p~hlk--n~~gn~~~~~~~~t~vtfnpNGtE------------lLvs~~gE-hVYlfdvn 303 (758)
T KOG1310|consen 246 CPP-------KDCRCVRYFSPGHLK--NSQGNLDRYITCCTYVTFNPNGTE------------LLVSWGGE-HVYLFDVN 303 (758)
T ss_pred CCC-------cccchhheecCcccc--CcccccccceeeeEEEEECCCCcE------------EEEeeCCe-EEEEEeec
Confidence 100 012233333221100 000000001123577899999874 77777765 69999999
Q ss_pred CCCCCccCCC
Q 012007 454 EHAPDLKGLH 463 (473)
Q Consensus 454 ~~~~~~~~~~ 463 (473)
..+.....+.
T Consensus 304 ~~~~~~~y~~ 313 (758)
T KOG1310|consen 304 EDKSPTPYFL 313 (758)
T ss_pred CCCCceeecC
Confidence 8887666544
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.1e-17 Score=139.08 Aligned_cols=197 Identities=16% Similarity=0.242 Sum_probs=157.1
Q ss_pred CEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC---CEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCC
Q 012007 248 GLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHE 324 (473)
Q Consensus 248 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 324 (473)
..++++...|.|++||..+++.+..++++...++.+.|..+ ..+.+|+.||+|++||+|...+. .......+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~----a~~~~~~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES----ARISWTQQS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh----hheeccCCC
Confidence 56888888999999999999999999999999999998764 28999999999999999965432 122233333
Q ss_pred -ccEEEEEEccCCCEEEEeCC----CCcEEEEecCCccc-ccceeecCcceEEEEEec---CCEEEEEeCCCcEEEEecC
Q 012007 325 -NAVTALAVNQESAVVYCGSS----DGLVNFWECEKHLS-HGGVLRGHKMAVLCLAAA---GNLVFSGSADRNICLWRRE 395 (473)
Q Consensus 325 -~~v~~l~~~~~~~~l~~~~~----dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~ 395 (473)
.+..+++.+-.++.+++|+. +-.|.+||++...+ +......|..-|+++.+. .++|++|+.||.|.|||+.
T Consensus 117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 46677777777888888854 67899999998766 556677899999887763 7899999999999999998
Q ss_pred CCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 396 ESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 396 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
.......+...-.|...|.++.|..++-. .|.+-+.+.+..+|++..+.+...
T Consensus 197 ~d~EeDaL~~viN~~sSI~~igw~~~~yk------------rI~clTH~Etf~~~ele~~~~~~~ 249 (376)
T KOG1188|consen 197 KDNEEDALLHVINHGSSIHLIGWLSKKYK------------RIMCLTHMETFAIYELEDGSEETW 249 (376)
T ss_pred CCcchhhHHHhhcccceeeeeeeecCCcc------------eEEEEEccCceeEEEccCCChhhc
Confidence 75444444444567778999999998732 488888999999999998875444
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-16 Score=139.31 Aligned_cols=265 Identities=21% Similarity=0.230 Sum_probs=186.0
Q ss_pred cccEEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCeeeE-EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCe
Q 012007 161 SGLVKAIIISGDSN-KIFTGHQDGKIRIWKVSRKNASVH-KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAV 238 (473)
Q Consensus 161 ~~~V~~l~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 238 (473)
..+|..+.|.++.. .|+||+.|..|++|.+........ ..+.. ...+-+|..+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y------------------------~s~Ls~H~~aV 68 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEY------------------------LSSLSRHTRAV 68 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEE------------------------eecccCCccee
Confidence 46899999988776 999999999999999876543211 01110 01122499999
Q ss_pred eEEEEcCCCCEEEEEeCCCCEEEEEcC--------C--------CeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEE
Q 012007 239 SCLSLNAEQGLLYSGSWDKTLKVWRIS--------D--------CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVK 301 (473)
Q Consensus 239 ~~l~~~~~~~~l~s~s~dg~v~vwd~~--------~--------~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~ 301 (473)
+++.|+|+|.+|++|+.+|.|.+|-.. + ......+.+|...|..++|++++ ++++++.|..++
T Consensus 69 N~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~ 148 (434)
T KOG1009|consen 69 NVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVR 148 (434)
T ss_pred EEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEE
Confidence 999999999999999999999999765 2 23345667899999999999998 889999999999
Q ss_pred EEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccc---------eee--------
Q 012007 302 VWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGG---------VLR-------- 364 (473)
Q Consensus 302 vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---------~~~-------- 364 (473)
+||+. ...+...+..|...+..++|.|-++++++-+.|...+.+++........ ...
T Consensus 149 l~Dv~------~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~r 222 (434)
T KOG1009|consen 149 LWDVH------AGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTR 222 (434)
T ss_pred EEEec------cceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceee
Confidence 99996 3446778899999999999999999999999998777776543211100 000
Q ss_pred -cCcc------eEEEEEecCCEEEEEeC----CC-----cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCccc
Q 012007 365 -GHKM------AVLCLAAAGNLVFSGSA----DR-----NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEY 428 (473)
Q Consensus 365 -~~~~------~v~~~~~~~~~l~s~~~----dg-----~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~ 428 (473)
-|.. .-.+|+|+|.+|++... .+ ..++|+... ..++...+.+-..++..+.|+|---....+
T Consensus 223 LfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~--l~rP~~~lp~~~k~~lavr~~pVy~elrp~ 300 (434)
T KOG1009|consen 223 LFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKD--LKRPAARLPSPKKPALAVRFSPVYYELRPL 300 (434)
T ss_pred eeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccc--ccCceeecCCCCcceEEEEeeeeEEEeccc
Confidence 0111 12467788988887642 22 335555442 245667777777777888877642111111
Q ss_pred cc-----CCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 429 HQ-----KGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 429 ~~-----~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
.. .-+.+.++|.++.| .|.|||.+...|.
T Consensus 301 ~~~~~~~~lpyrlvfaiAt~~-svyvydtq~~~P~ 334 (434)
T KOG1009|consen 301 SSEKFLFVLPYRLVFAIATKN-SVYVYDTQTLEPL 334 (434)
T ss_pred cccccccccccceEEEEeecc-eEEEeccccccce
Confidence 11 13455577777765 7999998876553
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.2e-16 Score=126.58 Aligned_cols=242 Identities=18% Similarity=0.282 Sum_probs=171.6
Q ss_pred ccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE
Q 012007 162 GLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL 241 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 241 (473)
..|.+-+|+|.+++|+.|..+|.|.+..+.+.........+ ........+|..+|+.+
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~g----------------------k~~iv~eqahdgpiy~~ 68 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPG----------------------KLKIVPEQAHDGPIYYL 68 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCC----------------------CcceeeccccCCCeeee
Confidence 34666789999999999999999999988654221111100 01111224599999999
Q ss_pred EEcCCCCEEEEEeCCCCEEEEEcCCCee------eEEe--ecCC-----CceeEEEEcCCC-EEEEEeCCCcEEEEeCcc
Q 012007 242 SLNAEQGLLYSGSWDKTLKVWRISDCKC------LESI--NAHD-----DAINSVVAGFDS-LVFTGSADGTVKVWRREL 307 (473)
Q Consensus 242 ~~~~~~~~l~s~s~dg~v~vwd~~~~~~------~~~~--~~~~-----~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~ 307 (473)
+|. ..+|++|+ ||.|+-|..+.... +.+. +.|. -.|+++...|.. -++.++.|+.++.||++.
T Consensus 69 ~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~ 145 (325)
T KOG0649|consen 69 AFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED 145 (325)
T ss_pred eee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecC
Confidence 998 35677777 59999997754321 1111 1122 357888887654 666666999999999974
Q ss_pred cCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccc--------eeecC-cceEEEEEecCC
Q 012007 308 QGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGG--------VLRGH-KMAVLCLAAAGN 378 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------~~~~~-~~~v~~~~~~~~ 378 (473)
+ .+...+.+|...|.++.--.....+++|+.||++++||+++.+.... .++.| ...|.+++.+..
T Consensus 146 G------~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed 219 (325)
T KOG0649|consen 146 G------RIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED 219 (325)
T ss_pred C------EEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc
Confidence 3 35678999999999999866666788999999999999987644321 12222 346789999999
Q ss_pred EEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 379 LVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 379 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
+|++|+ ...+.+|.++... ..++..+. .+|..+.|..+ .++++|..+.|.-|.+..
T Consensus 220 WlvCGg-Gp~lslwhLrsse-~t~vfpip---a~v~~v~F~~d---------------~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 220 WLVCGG-GPKLSLWHLRSSE-STCVFPIP---ARVHLVDFVDD---------------CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred eEEecC-CCceeEEeccCCC-ceEEEecc---cceeEeeeecc---------------eEEEeccccceeeeeecc
Confidence 999988 4579999999832 23444443 45788888877 678888888888888764
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-16 Score=150.69 Aligned_cols=208 Identities=16% Similarity=0.228 Sum_probs=153.2
Q ss_pred ccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCee--eEE----eecCCCceeEEEEcCCC---EEEEEeCCCcEEEE
Q 012007 234 HYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKC--LES----INAHDDAINSVVAGFDS---LVFTGSADGTVKVW 303 (473)
Q Consensus 234 ~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~--~~~----~~~~~~~v~~l~~~~~~---~l~s~~~dg~i~vw 303 (473)
....|.|++|+| +..+++.|..+|.|.+||++.+.. ... ...|..+++.+.|..+. -+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 678899999999 667888889999999999987655 222 23588899999996653 59999999999999
Q ss_pred eCcccCCCcceeeeeeec------cCCccEEEEEEccC-CCEEEEeCCCCcEEEEe---cCCcc----cccceeecCcce
Q 012007 304 RRELQGKGTKHCLAQVLL------KHENAVTALAVNQE-SAVVYCGSSDGLVNFWE---CEKHL----SHGGVLRGHKMA 369 (473)
Q Consensus 304 d~~~~~~~~~~~~~~~~~------~~~~~v~~l~~~~~-~~~l~~~~~dg~i~iwd---~~~~~----~~~~~~~~~~~~ 369 (473)
+++.-.......+..... .....+++++|.+. -..+++|+.+|.|.--+ .+... ........|.+.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 987533221111111111 22356899999884 46788999999987733 22222 222345567788
Q ss_pred EEEEEec---CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCc
Q 012007 370 VLCLAAA---GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKS 446 (473)
Q Consensus 370 v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~ 446 (473)
|.++.++ ...+++++ |.+|+||.-... ..++..+..+...|++++|+|.... +|+++..||.
T Consensus 401 v~~v~~nPF~~k~fls~g-DW~vriWs~~~~--~~Pl~~~~~~~~~v~~vaWSptrpa------------vF~~~d~~G~ 465 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI--ASPLLSLDSSPDYVTDVAWSPTRPA------------VFATVDGDGN 465 (555)
T ss_pred eEeeecCCCccceeeeec-cceeEeccccCC--CCcchhhhhccceeeeeEEcCcCce------------EEEEEcCCCc
Confidence 8888765 45566666 999999987721 4667777788888999999999875 8999999999
Q ss_pred EEEEEcCCCC
Q 012007 447 VKVWRVSEHA 456 (473)
Q Consensus 447 v~iW~i~~~~ 456 (473)
|.|||+....
T Consensus 466 l~iWDLl~~~ 475 (555)
T KOG1587|consen 466 LDIWDLLQDD 475 (555)
T ss_pred eehhhhhccc
Confidence 9999997643
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=142.28 Aligned_cols=194 Identities=21% Similarity=0.202 Sum_probs=146.4
Q ss_pred cEEEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeec
Q 012007 125 HIYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 125 ~V~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 202 (473)
.+.++..+|..|++|+.||++|||+.. ..+.....|.+.|.++.|+|||++|++.+.| ..+||+++++.........
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 677888889999999999999999954 4455667799999999999999999999999 8999999988433222211
Q ss_pred cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCC---CEE--EEEeCCCCEEEEEcCCCee-----eEE
Q 012007 203 SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQ---GLL--YSGSWDKTLKVWRISDCKC-----LES 272 (473)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---~~l--~s~s~dg~v~vwd~~~~~~-----~~~ 272 (473)
........+.|+.++ .++ +.....+.|+.||+...+. ...
T Consensus 227 ------------------------------~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~ 276 (398)
T KOG0771|consen 227 ------------------------------SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK 276 (398)
T ss_pred ------------------------------ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhh
Confidence 123344556677665 322 2333445677776643221 111
Q ss_pred eecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEE
Q 012007 273 INAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFW 351 (473)
Q Consensus 273 ~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iw 351 (473)
.-.-...|.+++.+.+| +++.|+.||.|.|++.. .-+........|...|+.+.|+|+.+++++.+.|..+.+.
T Consensus 277 ~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~-----~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 277 KIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAK-----SLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred hhhccCcceeEEEcCCCcEEEEeccCCcEEEEEec-----eeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence 11234479999999998 88899999999999986 4555666778899999999999999999999999988888
Q ss_pred ecC
Q 012007 352 ECE 354 (473)
Q Consensus 352 d~~ 354 (473)
.+.
T Consensus 352 ~l~ 354 (398)
T KOG0771|consen 352 KLA 354 (398)
T ss_pred EEe
Confidence 764
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.5e-16 Score=151.40 Aligned_cols=246 Identities=20% Similarity=0.274 Sum_probs=176.2
Q ss_pred ccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE
Q 012007 162 GLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL 241 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 241 (473)
..-..+.|+|-...++++...-.|+|||.+.+.....+..+.. ....|+.+
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~-----------------------------~~t~Vs~l 1115 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAF-----------------------------PDTRVSDL 1115 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCC-----------------------------CCCcccee
Confidence 3566778888888899988777999999998876544443321 44568888
Q ss_pred EEcC--CCCEEEEEeCCCCEEEEEcCC-----CeeeEEeec-------CCCceeEEEEcCC-CEEEEEeCCCcEEEEeCc
Q 012007 242 SLNA--EQGLLYSGSWDKTLKVWRISD-----CKCLESINA-------HDDAINSVVAGFD-SLVFTGSADGTVKVWRRE 306 (473)
Q Consensus 242 ~~~~--~~~~l~s~s~dg~v~vwd~~~-----~~~~~~~~~-------~~~~v~~l~~~~~-~~l~s~~~dg~i~vwd~~ 306 (473)
.+-. |..++++|+.||.|+||+-.. .+.+..+.+ ..+.-.-+.|... |+|++++.-..|+|||..
T Consensus 1116 ~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~ 1195 (1387)
T KOG1517|consen 1116 ELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAH 1195 (1387)
T ss_pred eeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecc
Confidence 8765 556899999999999997532 233333221 1111122345443 578888888999999997
Q ss_pred ccCCCcceeeeeeeccCCccEEEEEEcc-CCCEEEEeCCCCcEEEEecCCccc--ccceeecCcce--EEEEEec--CC-
Q 012007 307 LQGKGTKHCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKHLS--HGGVLRGHKMA--VLCLAAA--GN- 378 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~--v~~~~~~--~~- 378 (473)
..........+....|+++.-+- .|+.+++|..||.|++||.+.... .....+.|... |..++.+ |-
T Consensus 1196 -----~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~ 1270 (1387)
T KOG1517|consen 1196 -----KEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLG 1270 (1387)
T ss_pred -----cceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCc
Confidence 34444455556677788886654 569999999999999999886433 55667778777 7777654 33
Q ss_pred EEEEEeCCCcEEEEecCCCCceeEEEEecCCC--C-ceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 379 LVFSGSADRNICLWRREESGAHSCLAVLTGHT--G-PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 379 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~--~-~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
.|++|+.||.|++||++... .........|. + .++++..+++.. ++|+|+. +.|+||++...
T Consensus 1271 elvSgs~~G~I~~~DlR~~~-~e~~~~iv~~~~yGs~lTal~VH~hap-------------iiAsGs~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1271 ELVSGSQDGDIQLLDLRMSS-KETFLTIVAHWEYGSALTALTVHEHAP-------------IIASGSA-QLIKIYSLSGE 1335 (1387)
T ss_pred ceeeeccCCeEEEEecccCc-ccccceeeeccccCccceeeeeccCCC-------------eeeecCc-ceEEEEecChh
Confidence 59999999999999999742 22222333332 3 599999999988 8999998 99999999765
Q ss_pred C
Q 012007 456 A 456 (473)
Q Consensus 456 ~ 456 (473)
.
T Consensus 1336 ~ 1336 (1387)
T KOG1517|consen 1336 Q 1336 (1387)
T ss_pred h
Confidence 4
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.7e-14 Score=122.99 Aligned_cols=226 Identities=13% Similarity=0.204 Sum_probs=159.8
Q ss_pred EEEEEec--CCEEEEeeCCCcEEEeeCCcccccccc--CcccEEEEEEeCCCCEEEEEeCC--CeEEEEeCCCCCeeeEE
Q 012007 126 IYSLAAS--GDLLYTGSDSKNIRVWKNLKEFSGFKS--NSGLVKAIIISGDSNKIFTGHQD--GKIRIWKVSRKNASVHK 199 (473)
Q Consensus 126 V~~~~~~--g~~l~tg~~dg~i~vwd~~~~~~~~~~--h~~~V~~l~~s~~~~~l~s~~~d--g~i~vwd~~~~~~~~~~ 199 (473)
+..+.++ ...|..|+.||. ++|+.......+.. ....|-.+-|+.. ++|..+.+ ..+++.++..+..+...
T Consensus 8 i~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~ 84 (391)
T KOG2110|consen 8 INFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEI 84 (391)
T ss_pred eeeeeeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEE
Confidence 3344454 568889999884 78865432222222 2334555666554 77666654 34888887766544433
Q ss_pred eeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec---C
Q 012007 200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA---H 276 (473)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~---~ 276 (473)
. ....|.++.++. +.|+++-.+ .|+|||+++.+.++++.. +
T Consensus 85 ~---------------------------------fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n 128 (391)
T KOG2110|consen 85 F---------------------------------FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPN 128 (391)
T ss_pred e---------------------------------cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCC
Confidence 3 556788888865 567777654 499999999999988764 4
Q ss_pred CCceeEEEEcCCC-EEEE--EeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCc-EEEEe
Q 012007 277 DDAINSVVAGFDS-LVFT--GSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGL-VNFWE 352 (473)
Q Consensus 277 ~~~v~~l~~~~~~-~l~s--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~-i~iwd 352 (473)
...+.++..+.++ +++. ....|.|.+||+. .......+..|++.+.+++|+++|.+||+++..|+ ||+|.
T Consensus 129 ~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~------nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~ 202 (391)
T KOG2110|consen 129 PKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI------NLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFS 202 (391)
T ss_pred ccceEeeccCCCCceEEecCCCCCceEEEEEcc------cceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEE
Confidence 4456666666655 5553 3346899999985 34456677899999999999999999999999997 69999
Q ss_pred cCCcccccceeecCc-ceE--EEEEecCCEEEEEeCCCcEEEEecCC
Q 012007 353 CEKHLSHGGVLRGHK-MAV--LCLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 353 ~~~~~~~~~~~~~~~-~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
+.++.......+|-. ..+ ++|++++.+|++.+..++|++|.+..
T Consensus 203 v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 203 VPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred cCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 988776655555443 223 45566799999999999999999875
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.3e-17 Score=146.87 Aligned_cols=281 Identities=16% Similarity=0.179 Sum_probs=209.0
Q ss_pred EEEEecCCEEEEeeCCCcEEEeeCCcc-ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecccc
Q 012007 127 YSLAASGDLLYTGSDSKNIRVWKNLKE-FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLP 205 (473)
Q Consensus 127 ~~~~~~g~~l~tg~~dg~i~vwd~~~~-~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 205 (473)
...+-+|..|+.|+.-|.|-.+|.... +..-..-...|.++.|-.+.+++|++ ....+.|||-...+.....
T Consensus 135 ~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtElHClk------ 207 (545)
T KOG1272|consen 135 LDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTELHCLK------ 207 (545)
T ss_pred eeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhh-hhceEEEecCCCcEEeehh------
Confidence 345557999999999999999997633 22222235679999998888888876 4558999997655432221
Q ss_pred ccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEE
Q 012007 206 TFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVA 285 (473)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~ 285 (473)
....|..+.|-|..-+|++++..|.++.-|+.+|+.+..+....+.+..+.-
T Consensus 208 ----------------------------~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~q 259 (545)
T KOG1272|consen 208 ----------------------------RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQ 259 (545)
T ss_pred ----------------------------hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhc
Confidence 3457888999999889999999999999999999999999988889999998
Q ss_pred cCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceee
Q 012007 286 GFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLR 364 (473)
Q Consensus 286 ~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 364 (473)
+|-+ .+-+|...|+|.+|... ...++..+..|.++|.+|++.++|+|+++.+.|..++|||++....+.....
T Consensus 260 NP~NaVih~GhsnGtVSlWSP~------skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 260 NPYNAVIHLGHSNGTVSLWSPN------SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred CCccceEEEcCCCceEEecCCC------CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence 8887 77799999999999885 3345566788999999999999999999999999999999998766554444
Q ss_pred cCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCC--CCceeEEEEecCCCCCcccccCCCccEEEEEee
Q 012007 365 GHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGH--TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS 442 (473)
Q Consensus 365 ~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s 442 (473)
.|.. ..++.+.+-+++++....|.||.-........-..+..| .++|..+.|.|-.. +|-.|-
T Consensus 334 p~~a--~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~ED-------------vLGIGH 398 (545)
T KOG1272|consen 334 PHPA--SNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYED-------------VLGIGH 398 (545)
T ss_pred CCCc--cccccccccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHH-------------eeeccc
Confidence 3443 445555555555555668999964322111112222223 45899999999876 666666
Q ss_pred CCCcEEEEEcCCCCCCccCCC
Q 012007 443 LDKSVKVWRVSEHAPDLKGLH 463 (473)
Q Consensus 443 ~Dg~v~iW~i~~~~~~~~~~~ 463 (473)
..|--.|.=...++|....+.
T Consensus 399 ~~G~tsilVPGsGePN~Ds~e 419 (545)
T KOG1272|consen 399 AGGITSILVPGSGEPNYDSLE 419 (545)
T ss_pred cCCceeEeccCCCCCCcchhc
Confidence 666655665666666665554
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3e-15 Score=137.79 Aligned_cols=282 Identities=14% Similarity=0.184 Sum_probs=192.6
Q ss_pred cCcccEEEEEEeCCCCEEE-EEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceE------EEeec-ceee
Q 012007 159 SNSGLVKAIIISGDSNKIF-TGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYV------EVRRN-RSVL 230 (473)
Q Consensus 159 ~h~~~V~~l~~s~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~ 230 (473)
.+...-+.|..+|||+|++ +|..--.|++||+.................-..+........++ .+... ....
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 4778889999999999865 55567789999998766555444433322222222211111111 11110 0001
Q ss_pred EeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccC
Q 012007 231 KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 231 ~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~ 309 (473)
.+.-...-..|+++.-..-|+.++....|+-++++.|+.+..+....+.++++..++.. +|++|+.+|.|..||.+...
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS 208 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence 11112233456666545556666667789999999999999999888999999998876 88888889999999998654
Q ss_pred CCcceeeeeeeccCCc-----cEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEec----CCEE
Q 012007 310 KGTKHCLAQVLLKHEN-----AVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA----GNLV 380 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~-----~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~----~~~l 380 (473)
.............|.+ .|+++.|+.+|-.+++|+.+|.|.|||++....+...-.+...+|..+.|. ++.|
T Consensus 209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v 288 (703)
T KOG2321|consen 209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKV 288 (703)
T ss_pred hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceE
Confidence 3333223333333433 499999999999999999999999999998766644444455667777763 3455
Q ss_pred EEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 381 FSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 381 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
++.. ...++|||-.++ +....+.. +..++.+++-|+.. +++++-.+..+..|=+....|.
T Consensus 289 ~S~D-k~~~kiWd~~~G---k~~asiEp-t~~lND~C~~p~sG-------------m~f~Ane~~~m~~yyiP~LGPa 348 (703)
T KOG2321|consen 289 VSMD-KRILKIWDECTG---KPMASIEP-TSDLNDFCFVPGSG-------------MFFTANESSKMHTYYIPSLGPA 348 (703)
T ss_pred Eecc-hHHhhhcccccC---Cceeeccc-cCCcCceeeecCCc-------------eEEEecCCCcceeEEccccCCC
Confidence 5543 568999999884 44554443 44599999999988 8999999998888888765543
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.4e-15 Score=127.42 Aligned_cols=231 Identities=12% Similarity=0.106 Sum_probs=172.5
Q ss_pred CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 160 NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
-.++|+|.+|++|+..+|.+.....|.||.....+.-.... .+..|...|+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~h-----------------------------tls~Hd~~vt 59 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAH-----------------------------TLSEHDKIVT 59 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceece-----------------------------ehhhhCccee
Confidence 35789999999999999999999999999987765211111 1113999999
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcC-CC--eeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCccee
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRIS-DC--KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHC 315 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~~-~~--~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~ 315 (473)
+++|+|..+.|++++.|..-++|... .+ ++...+..+....+++.|+|.+ .|++|+....|.||-.+..+ .-..
T Consensus 60 gvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN--dWWV 137 (361)
T KOG1523|consen 60 GVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN--DWWV 137 (361)
T ss_pred EEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc--ceeh
Confidence 99999999999999999999999983 33 4455566788999999999987 89999999999999876332 2333
Q ss_pred eeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEec-----CCc---------ccc---cceeecCcceE--EEEEec
Q 012007 316 LAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWEC-----EKH---------LSH---GGVLRGHKMAV--LCLAAA 376 (473)
Q Consensus 316 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~-----~~~---------~~~---~~~~~~~~~~v--~~~~~~ 376 (473)
.......+.+.|+++.|+|++-+|++|+.|+..++|.. +.. ... ........+.+ ..|+++
T Consensus 138 sKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s 217 (361)
T KOG1523|consen 138 SKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS 217 (361)
T ss_pred hhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC
Confidence 34456678899999999999999999999999999964 110 001 01111223344 556677
Q ss_pred CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 377 GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 377 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
|+.|+-.+.|+.+.+=|..... +.+.....-.-+..++.|-.+..
T Consensus 218 G~~lawv~Hds~v~~~da~~p~--~~v~~~~~~~lP~ls~~~ise~~ 262 (361)
T KOG1523|consen 218 GNRLAWVGHDSTVSFVDAAGPS--ERVQSVATAQLPLLSVSWISENS 262 (361)
T ss_pred CCEeeEecCCCceEEeecCCCc--hhccchhhccCCceeeEeecCCc
Confidence 9999999999999999987632 22333333336778888877654
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.5e-14 Score=133.38 Aligned_cols=240 Identities=10% Similarity=0.176 Sum_probs=152.6
Q ss_pred EEEEEecCCEEEEee-CCCcEEEeeCCc--cccccc--cCcccEEEEEEeCCCCEEEEEeC-CCeEEEEeCCCCCeeeEE
Q 012007 126 IYSLAASGDLLYTGS-DSKNIRVWKNLK--EFSGFK--SNSGLVKAIIISGDSNKIFTGHQ-DGKIRIWKVSRKNASVHK 199 (473)
Q Consensus 126 V~~~~~~g~~l~tg~-~dg~i~vwd~~~--~~~~~~--~h~~~V~~l~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~ 199 (473)
-..+++++++|++++ .++.|.+|+... .+.... ...+....++|+|++++|++++. ++.|.+|+++.......
T Consensus 39 ~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~- 117 (330)
T PRK11028 39 PMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVA- 117 (330)
T ss_pred cEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCC-
Confidence 346678899887764 488999998642 121111 12345678999999999988775 78999999964321110
Q ss_pred eeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEE-----e
Q 012007 200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLES-----I 273 (473)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~-----~ 273 (473)
.... ..+.....+++++|+++++++++ .++.|.+||+.+...+.. .
T Consensus 118 ~~~~----------------------------~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~ 169 (330)
T PRK11028 118 PIQI----------------------------IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEV 169 (330)
T ss_pred ceee----------------------------ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCce
Confidence 0000 01223466788999999887665 568999999976432211 1
Q ss_pred e-cCCCceeEEEEcCCC-EEEEEeC-CCcEEEEeCcccCCCcceeeeeeecc------CCccEEEEEEccCCCEEEEeCC
Q 012007 274 N-AHDDAINSVVAGFDS-LVFTGSA-DGTVKVWRRELQGKGTKHCLAQVLLK------HENAVTALAVNQESAVVYCGSS 344 (473)
Q Consensus 274 ~-~~~~~v~~l~~~~~~-~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~------~~~~v~~l~~~~~~~~l~~~~~ 344 (473)
. ........+.++|++ +++++.. ++.|.+|+++.... .......+.. +......+.++|++++++++..
T Consensus 170 ~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~ 247 (330)
T PRK11028 170 TTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG--EIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR 247 (330)
T ss_pred ecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC--CEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC
Confidence 1 123345678999998 5656655 89999999973211 1111222111 1223346899999999998864
Q ss_pred -CCcEEEEecCCcccc---cc-eeecCcceEEEEEecCCEEEEEeC-CCcEEEEecCC
Q 012007 345 -DGLVNFWECEKHLSH---GG-VLRGHKMAVLCLAAAGNLVFSGSA-DRNICLWRREE 396 (473)
Q Consensus 345 -dg~i~iwd~~~~~~~---~~-~~~~~~~~v~~~~~~~~~l~s~~~-dg~i~iwd~~~ 396 (473)
++.|.+|++...... .. ...+....-..++++|++|+++.. +++|.+|+++.
T Consensus 248 ~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 248 TASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 789999998643211 11 111212234677889999998775 88999998863
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.2e-14 Score=131.24 Aligned_cols=277 Identities=14% Similarity=0.196 Sum_probs=169.3
Q ss_pred cEEEEEec--CCEEEEeeCCCcEEEeeCC------ccccccccCcccEEEEEE-----eCCCCEEEEEeCCCeEEEEeCC
Q 012007 125 HIYSLAAS--GDLLYTGSDSKNIRVWKNL------KEFSGFKSNSGLVKAIII-----SGDSNKIFTGHQDGKIRIWKVS 191 (473)
Q Consensus 125 ~V~~~~~~--g~~l~tg~~dg~i~vwd~~------~~~~~~~~h~~~V~~l~~-----s~~~~~l~s~~~dg~i~vwd~~ 191 (473)
.+....++ |++|+-.-. ..+.+|+.. +.+....-......|-+| .+.+--|+.|-.-|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 44555554 555554433 357777643 112111111122233344 3456668888888888888865
Q ss_pred CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeee
Q 012007 192 RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCL 270 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~ 270 (473)
..+....+... . .-....|+|+.|-| +...++++-.+|.+++||..-
T Consensus 204 ~~~~sklfne~----------------r------------~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~---- 251 (636)
T KOG2394|consen 204 NFEVSKLFNEE----------------R------------LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI---- 251 (636)
T ss_pred hhHHHHhhhhc----------------c------------cccccceEEEEEEeCCCceEEEEEecCceEEeeccc----
Confidence 52221111100 0 01447899999999 445777778899999999721
Q ss_pred EEeecCCCceeEEEE--cCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCc
Q 012007 271 ESINAHDDAINSVVA--GFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGL 347 (473)
Q Consensus 271 ~~~~~~~~~v~~l~~--~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~ 347 (473)
....+...+ .+++ .+... .|.-. ....++....-.++.|..++|+|||++||+.+.||.
T Consensus 252 ------~~~~t~p~~~~~k~~~~f~i~-------t~ksk-----~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf 313 (636)
T KOG2394|consen 252 ------VCGATAPSYQALKDGDQFAIL-------TSKSK-----KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGF 313 (636)
T ss_pred ------cccCCCCcccccCCCCeeEEe-------eeecc-----ccCCccceeEeccccccceeEcCCCceEEEEecCce
Confidence 111111111 1222 22211 11111 010122223333558999999999999999999999
Q ss_pred EEEEecCCcccccceeecC--cceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCC
Q 012007 348 VNFWECEKHLSHGGVLRGH--KMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHD 425 (473)
Q Consensus 348 i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 425 (473)
++|||..+.+.+ ...+.- .....||+|||+||++|++|.-|.||.+.. .+.+..-.+|..+|+.++|.|--...
T Consensus 314 LRvF~fdt~eLl-g~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e---rRVVARGqGHkSWVs~VaFDpytt~~ 389 (636)
T KOG2394|consen 314 LRIFDFDTQELL-GVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE---RRVVARGQGHKSWVSVVAFDPYTTST 389 (636)
T ss_pred EEEeeccHHHHH-HHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc---ceEEEeccccccceeeEeeccccccc
Confidence 999999875433 233222 234567788999999999999999999988 68899999999999999999521100
Q ss_pred cc-----------------------------------cccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 426 HE-----------------------------------YHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 426 ~~-----------------------------------~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
.. +.....-.+.|.+.|.|-.+.+||+.+..
T Consensus 390 ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 390 EEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred ccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhh
Confidence 00 00001145689999999999999998764
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.1e-16 Score=136.76 Aligned_cols=196 Identities=18% Similarity=0.266 Sum_probs=148.6
Q ss_pred eEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeee
Q 012007 239 SCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLA 317 (473)
Q Consensus 239 ~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 317 (473)
.+++|+.+|..|++|+.||+++||+..+...+.....|...|.++.|+|++ +|++.+.| ..+||+.+.+.. +.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~-----~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA-----LA 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch-----hh
Confidence 789999999999999999999999998888888888999999999999999 88888888 999999985421 11
Q ss_pred eee-ccCCccEEEEEEccCC-----CEEEEeCCCCcEEEEecCCc-----ccccceeecC-cceEEEEEecCCEEEEEeC
Q 012007 318 QVL-LKHENAVTALAVNQES-----AVVYCGSSDGLVNFWECEKH-----LSHGGVLRGH-KMAVLCLAAAGNLVFSGSA 385 (473)
Q Consensus 318 ~~~-~~~~~~v~~l~~~~~~-----~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~-~~~v~~~~~~~~~l~s~~~ 385 (473)
... ...+.....+.|+.++ .+++....-+.|+.||+... .+..+....+ ....+.++.+|++++.|+.
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence 111 2334445667787766 23333344556666665421 1222233333 4555677788999999999
Q ss_pred CCcEEEEecCCCCceeEEE-EecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 386 DRNICLWRREESGAHSCLA-VLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 386 dg~i~iwd~~~~~~~~~~~-~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
||.|-|++..+ .++++ .-+.|...|+.+.|+|+.+ ++++.+.|....|..+.-..
T Consensus 302 dGsVai~~~~~---lq~~~~vk~aH~~~VT~ltF~Pdsr-------------~~~svSs~~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 302 DGSVAIYDAKS---LQRLQYVKEAHLGFVTGLTFSPDSR-------------YLASVSSDNEAAVTKLAVDK 357 (398)
T ss_pred CCcEEEEEece---eeeeEeehhhheeeeeeEEEcCCcC-------------cccccccCCceeEEEEeecc
Confidence 99999999988 34333 3457999999999999998 79999999999999987643
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-14 Score=145.21 Aligned_cols=279 Identities=13% Similarity=0.196 Sum_probs=176.3
Q ss_pred eeCC-ccccccccCcccEEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCeee-EEeeccccccceeEeecCCCcceEEEe
Q 012007 148 WKNL-KEFSGFKSNSGLVKAIIISGDS-NKIFTGHQDGKIRIWKVSRKNASV-HKRVGSLPTFKDYVKSSVNPKNYVEVR 224 (473)
Q Consensus 148 wd~~-~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (473)
|+.. ..+..+..|...|..++.+++. .+++||+.||+|++|+...-.... ..+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~r------------------------ 1089 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSAR------------------------ 1089 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceee------------------------
Confidence 6654 4466788899999999997765 999999999999999986532210 000
Q ss_pred ecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC--e-----eeEEeecC-CCceeEE-EEcCC--C-EEE
Q 012007 225 RNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC--K-----CLESINAH-DDAINSV-VAGFD--S-LVF 292 (473)
Q Consensus 225 ~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~--~-----~~~~~~~~-~~~v~~l-~~~~~--~-~l~ 292 (473)
...........+.++.+.+.++.+|+++.||.|++.++... + +.+..+.+ .+.+..+ ++... . .++
T Consensus 1090 --S~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lv 1167 (1431)
T KOG1240|consen 1090 --SELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLV 1167 (1431)
T ss_pred --eeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEE
Confidence 00111115678899999999999999999999999998652 1 12222222 2334333 33222 2 788
Q ss_pred EEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEE
Q 012007 293 TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLC 372 (473)
Q Consensus 293 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 372 (473)
.+..-+.|..||++.... .+ ........+.|++++.+|.+.+++.|+..|.+.+||++-.........++...+..
T Consensus 1168 y~T~~~~iv~~D~r~~~~--~w--~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~ 1243 (1431)
T KOG1240|consen 1168 YATDLSRIVSWDTRMRHD--AW--RLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRH 1243 (1431)
T ss_pred EEEeccceEEecchhhhh--HH--hhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcce
Confidence 888899999999985332 11 11223345789999999999999999999999999998765555555555556544
Q ss_pred EE--ec---CCEEEEEe--CCCcEEEEecCCCCceeEEEEecC-----CCCceeEEEEecCCCCCcccccCCCccEEEEE
Q 012007 373 LA--AA---GNLVFSGS--ADRNICLWRREESGAHSCLAVLTG-----HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYS 440 (473)
Q Consensus 373 ~~--~~---~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~-----h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s 440 (473)
+. +- ....++++ ..+.|.+|++.++.....+..-.+ +..+.. .+-.|... ...++...++.-++++
T Consensus 1244 v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~-~~~kp~~~-~~~~~~~~~~~~~~lt 1321 (1431)
T KOG1240|consen 1244 VWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSN-DARKPDSL-AGISCGVCEKNGFLLT 1321 (1431)
T ss_pred EEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccc-cCCCCCcc-cceeeecccCCceeee
Confidence 43 22 24555544 467899999998533222222100 000110 00001111 0111111222228999
Q ss_pred eeCCCcEEEEEcCCCCCC
Q 012007 441 GSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 441 ~s~Dg~v~iW~i~~~~~~ 458 (473)
|+.|..|+.||.......
T Consensus 1322 ggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1322 GGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred cCCccceeeccCCCcccc
Confidence 999999999999876544
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.8e-16 Score=140.12 Aligned_cols=204 Identities=17% Similarity=0.221 Sum_probs=154.9
Q ss_pred CCEEEEeeCCCcEEEeeC-CccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeE
Q 012007 133 GDLLYTGSDSKNIRVWKN-LKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYV 211 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~-~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 211 (473)
.+.++.++.||.+.|-+- .+.......|.++|.+-.|+|||.-|++++.||.|++|.-...-..
T Consensus 75 ~d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRS--------------- 139 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRS--------------- 139 (737)
T ss_pred cceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHH---------------
Confidence 346778888999988863 4555677889999999999999999999999999999986432110
Q ss_pred eecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-E
Q 012007 212 KSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-L 290 (473)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~ 290 (473)
.......+|.|++|.|+.+.++-+. .+.+.|=-+.....+-.+++|++-|.++.|++.. +
T Consensus 140 ------------------tl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~l 200 (737)
T KOG1524|consen 140 ------------------TVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNI 200 (737)
T ss_pred ------------------HHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccc
Confidence 0012567899999999876555544 3577787777777788899999999999999886 9
Q ss_pred EEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceE
Q 012007 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAV 370 (473)
Q Consensus 291 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 370 (473)
+++|+.|-..++||-. .........|+.+|++++|+|+ ..++.++. .++++ .....+.|
T Consensus 201 I~sgGED~kfKvWD~~-------G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~------------~~p~~GSi 259 (737)
T KOG1524|consen 201 IASGGEDFRFKIWDAQ-------GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF------------SSPRVGSI 259 (737)
T ss_pred eeecCCceeEEeeccc-------CcccccCChhccceeeeeeccc-cceeeeee-eeeee------------cCCCccce
Confidence 9999999999999964 2234566789999999999999 55555553 33441 11223344
Q ss_pred --EEEEecCCEEEEEeCCCcEEE
Q 012007 371 --LCLAAAGNLVFSGSADRNICL 391 (473)
Q Consensus 371 --~~~~~~~~~l~s~~~dg~i~i 391 (473)
.++++||..+++|+..|.+.+
T Consensus 260 fnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 260 FNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred EEEEEcCCCceeeccccCceEEE
Confidence 556678999999998887765
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.4e-15 Score=135.64 Aligned_cols=259 Identities=15% Similarity=0.161 Sum_probs=172.3
Q ss_pred eecccEEEEEecC-CEEEEeeCCCcEEEee-CC-ccccccccCcccEEEEEE-e-------CCCCEEEEEeCCCeEEEEe
Q 012007 121 RKEGHIYSLAASG-DLLYTGSDSKNIRVWK-NL-KEFSGFKSNSGLVKAIII-S-------GDSNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 121 ~h~~~V~~~~~~g-~~l~tg~~dg~i~vwd-~~-~~~~~~~~h~~~V~~l~~-s-------~~~~~l~s~~~dg~i~vwd 189 (473)
.|...|.|+.+.+ .-++..++|..+.+|. .. .......-....|....+ - .....|+.++.||.+.+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 3555566777763 3455556666777774 32 112222111111211111 0 1224688889999998887
Q ss_pred CCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee
Q 012007 190 VSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
-...-.... -.|.+++.|-.|+|+|.-|+++++||.|++|. ++|-.
T Consensus 92 k~~rVE~sv---------------------------------~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGML 137 (737)
T KOG1524|consen 92 KSARVERSI---------------------------------SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGML 137 (737)
T ss_pred ccchhhhhh---------------------------------hhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchH
Confidence 543321110 13999999999999999999999999999998 45655
Q ss_pred eEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEE
Q 012007 270 LESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVN 349 (473)
Q Consensus 270 ~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~ 349 (473)
-.++-....+|.|++|.|+..-+.-+..+.+.|=-+. ..........|.+-|.++.|++..+++++|+.|-..+
T Consensus 138 RStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~------~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfK 211 (737)
T KOG1524|consen 138 RSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLA------ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFK 211 (737)
T ss_pred HHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecc------cccceeEEeccCcEEEEeecCccccceeecCCceeEE
Confidence 5555567789999999998722222344555554443 2223456778999999999999999999999999999
Q ss_pred EEecCCcccccceeecCcceEEEEEecC-CEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCccc
Q 012007 350 FWECEKHLSHGGVLRGHKMAVLCLAAAG-NLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEY 428 (473)
Q Consensus 350 iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~ 428 (473)
+||....... ....|.-++++++++. ..++.++. ++++ .-....+.|..++|++||.
T Consensus 212 vWD~~G~~Lf--~S~~~ey~ITSva~npd~~~~v~S~-nt~R--------------~~~p~~GSifnlsWS~DGT----- 269 (737)
T KOG1524|consen 212 IWDAQGANLF--TSAAEEYAITSVAFNPEKDYLLWSY-NTAR--------------FSSPRVGSIFNLSWSADGT----- 269 (737)
T ss_pred eecccCcccc--cCChhccceeeeeeccccceeeeee-eeee--------------ecCCCccceEEEEEcCCCc-----
Confidence 9998754333 4456777788877764 34444432 2333 2234567899999999998
Q ss_pred ccCCCccEEEEEeeCCCcEEE
Q 012007 429 HQKGDQRWTVYSGSLDKSVKV 449 (473)
Q Consensus 429 ~~~~~~~~~l~s~s~Dg~v~i 449 (473)
.++.|+..|.|.+
T Consensus 270 --------Q~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 270 --------QATCGTSTGQLIV 282 (737)
T ss_pred --------eeeccccCceEEE
Confidence 7888888887765
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-13 Score=133.08 Aligned_cols=311 Identities=14% Similarity=0.177 Sum_probs=210.1
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCC---CEEEEEeCCCeEEEEeCCCCCeeeEEeec
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDS---NKIFTGHQDGKIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 202 (473)
.++.|+++++.... ..|.||.+. ..+..+.+|..+++.+.+.|.. .++++++.||.|++||...+.........
T Consensus 23 vfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~ 101 (792)
T KOG1963|consen 23 VFSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNN 101 (792)
T ss_pred ccccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecC
Confidence 46678888877775 489999755 5677899999999999997754 47889999999999999988776655543
Q ss_pred ccccccee-----------EeecCCCcceE--------EEeecceeeEe--------eccCCeeEEEEcCCCCEEEEEeC
Q 012007 203 SLPTFKDY-----------VKSSVNPKNYV--------EVRRNRSVLKI--------RHYDAVSCLSLNAEQGLLYSGSW 255 (473)
Q Consensus 203 ~~~~~~~~-----------~~~~~~~~~~~--------~~~~~~~~~~~--------~~~~~v~~l~~~~~~~~l~s~s~ 255 (473)
.......+ ..+..+..... ...+....... .|.. -.+|.+++.|.+.+..-
T Consensus 102 ~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~- 179 (792)
T KOG1963|consen 102 LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVH- 179 (792)
T ss_pred CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEEEE-
Confidence 22111111 00100000000 00000000111 1211 35677888777666665
Q ss_pred CCCEEEEEcCCCeeeEE----eecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEE
Q 012007 256 DKTLKVWRISDCKCLES----INAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTAL 330 (473)
Q Consensus 256 dg~v~vwd~~~~~~~~~----~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l 330 (473)
+..+.+|+......... -..|...+++.+++|.+ +++++..||.|.+|.--... ........+.-|...|+++
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~--~~~~t~t~lHWH~~~V~~L 257 (792)
T KOG1963|consen 180 MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS--DDSETCTLLHWHHDEVNSL 257 (792)
T ss_pred eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccc--cccccceEEEeccccccee
Confidence 45688998877541111 12466668999999998 89999999999999643211 1222335567788999999
Q ss_pred EEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceE--EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecC
Q 012007 331 AVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTG 408 (473)
Q Consensus 331 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 408 (473)
+|+++|.+|++|+.+|.+.+|.+.++. .+.+..-...+ ..+++|+.+.+....|+.|.+....+......+..+..
T Consensus 258 ~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~ 335 (792)
T KOG1963|consen 258 SFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKP 335 (792)
T ss_pred EEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccC
Confidence 999999999999999999999999866 34555455555 45568899999999999999998865322222222221
Q ss_pred --------CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 409 --------HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 409 --------h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
..+-.+.++++|.-. .++-.+..|.|.+||+.+....
T Consensus 336 ~~~~~k~~~~~l~t~~~idpr~~-------------~~vln~~~g~vQ~ydl~td~~i 380 (792)
T KOG1963|consen 336 PTPSTKTRPQSLTTGVSIDPRTN-------------SLVLNGHPGHVQFYDLYTDSTI 380 (792)
T ss_pred CCccccccccccceeEEEcCCCC-------------ceeecCCCceEEEEecccccee
Confidence 245578889999544 5788889999999999876544
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-14 Score=125.32 Aligned_cols=249 Identities=17% Similarity=0.256 Sum_probs=178.6
Q ss_pred cceeeeeeecccEEEEE--ecCCEEEEeeCCCcEEEeeCC---ccc-cccccCcccEEEEEEeCCCCEEEEEeCCCeEEE
Q 012007 114 GLIGSIVRKEGHIYSLA--ASGDLLYTGSDSKNIRVWKNL---KEF-SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~--~~g~~l~tg~~dg~i~vwd~~---~~~-~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~v 187 (473)
.+...+.||.+.|++.. +-..-+++.+.|.++|||-.. +.- ........+++++.+.++...|+.|-..|++.-
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence 34556777888777644 446679999999999999433 211 122334678999999999999999999999988
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~ 267 (473)
+.+...-..... ......|...|..+-|+....++++.+.|..+.---.+.+
T Consensus 95 fs~sedfnkm~~----------------------------~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~ 146 (404)
T KOG1409|consen 95 FALSEDFNKMTF----------------------------LKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESG 146 (404)
T ss_pred EEhhhhhhhcch----------------------------hhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccC
Confidence 776432111100 0111248999999999999999999999988765555555
Q ss_pred eeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCc
Q 012007 268 KCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGL 347 (473)
Q Consensus 268 ~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~ 347 (473)
..+..+... ..-+++.+.-. +.+.|...|.|.+-.+.. ....+...+.+|...+++++|.+....|++|..|..
T Consensus 147 ~~lg~Y~~~-~~~t~~~~d~~-~~fvGd~~gqvt~lr~~~----~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~ 220 (404)
T KOG1409|consen 147 NRLGGYNFE-TPASALQFDAL-YAFVGDHSGQITMLKLEQ----NGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHS 220 (404)
T ss_pred CcccceEee-ccCCCCceeeE-EEEecccccceEEEEEee----cCCceEEEEcCcccceEEEEEcCCCcEEEeccccCc
Confidence 544332210 01111111111 566777778887776653 344467788999999999999999999999999999
Q ss_pred EEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCC
Q 012007 348 VNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 348 i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~ 396 (473)
+.+||+.........+.+|...|..++. .-+.+++++.||.|.+|+++.
T Consensus 221 vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 221 VIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred eEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 9999998766666788889888877664 367899999999999999874
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.7e-14 Score=134.87 Aligned_cols=234 Identities=13% Similarity=0.021 Sum_probs=153.1
Q ss_pred cEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeC---CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcc
Q 012007 144 NIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQ---DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKN 219 (473)
Q Consensus 144 ~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (473)
.|.+||.. .....+..+...+...+|+|||+.|+..+. +..|.+|++.+++......
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~------------------- 240 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS------------------- 240 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-------------------
Confidence 68888865 334445556778999999999999886543 3579999998765322111
Q ss_pred eEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE-eCCC--CEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEe
Q 012007 220 YVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG-SWDK--TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGS 295 (473)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg--~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~ 295 (473)
....+....|+|||+.|+.. +.+| .|++||+.+++.... ..+...+....|+|++ .|+..+
T Consensus 241 --------------~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s 305 (429)
T PRK03629 241 --------------FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTS 305 (429)
T ss_pred --------------CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEe
Confidence 22234468999999988765 4444 489999988765443 3344567788999998 455444
Q ss_pred C-CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC---CcEEEEecCCcccccceeecCcceEE
Q 012007 296 A-DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD---GLVNFWECEKHLSHGGVLRGHKMAVL 371 (473)
Q Consensus 296 ~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~ 371 (473)
. ++...+|.+...+. . ...+...........|+|+|++|+..+.+ ..|.+||+.++... .....+.....
T Consensus 306 ~~~g~~~Iy~~d~~~g-~----~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p 379 (429)
T PRK03629 306 DQAGRPQVYKVNINGG-A----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETP 379 (429)
T ss_pred CCCCCceEEEEECCCC-C----eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCc
Confidence 4 45566664432211 1 11222233445678999999988776543 35888998765422 12122223346
Q ss_pred EEEecCCEEEEEeCCCc---EEEEecCCCCceeEEEEecCCCCceeEEEEecC
Q 012007 372 CLAAAGNLVFSGSADRN---ICLWRREESGAHSCLAVLTGHTGPVKCLAVEED 421 (473)
Q Consensus 372 ~~~~~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 421 (473)
.+++||++|+.++.++. +.++++.. .....+.+|.+.+...+|+|-
T Consensus 380 ~~SpDG~~i~~~s~~~~~~~l~~~~~~G----~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 380 SIAPNGTMVIYSSSQGMGSVLNLVSTDG----RFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred eECCCCCEEEEEEcCCCceEEEEEECCC----CCeEECccCCCCcCCcccCCC
Confidence 78899999999988765 66777754 334556678888999999873
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=9e-14 Score=120.56 Aligned_cols=272 Identities=14% Similarity=0.224 Sum_probs=172.5
Q ss_pred cccEEEEEec--CCEEEEeeCCCcEEEeeCC---c----cccccccCc------------ccEEEEEEeCCCC--EEEEE
Q 012007 123 EGHIYSLAAS--GDLLYTGSDSKNIRVWKNL---K----EFSGFKSNS------------GLVKAIIISGDSN--KIFTG 179 (473)
Q Consensus 123 ~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~---~----~~~~~~~h~------------~~V~~l~~s~~~~--~l~s~ 179 (473)
.+-|.++.++ |++||||..+|.|.++.-. + -...++.|. ..|..|.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4556777776 9999999999999999532 1 122344442 4689999988764 56666
Q ss_pred eCCCeEEEEeCCCCCeeeEEee----ccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC
Q 012007 180 HQDGKIRIWKVSRKNASVHKRV----GSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW 255 (473)
Q Consensus 180 ~~dg~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~ 255 (473)
+.|.+|++|.+........... ........+......+.........+......|.-.|.+|.++.|+..++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 8899999999876544331000 00000111111111122222222333344446888999999999999998876
Q ss_pred CCCEEEEEcCCCe-e--eEEeecC-----CCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCccee----------
Q 012007 256 DKTLKVWRISDCK-C--LESINAH-----DDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHC---------- 315 (473)
Q Consensus 256 dg~v~vwd~~~~~-~--~~~~~~~-----~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~---------- 315 (473)
|=.|.+|+++--. . +-.++.+ ...|++..|+|.. .++-.+..|+|++.|++....-....
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 6789999986322 1 2223333 2467788898875 78888899999999998321110000
Q ss_pred eeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCc------------ceE-----EEEEecCC
Q 012007 316 LAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHK------------MAV-----LCLAAAGN 378 (473)
Q Consensus 316 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------------~~v-----~~~~~~~~ 378 (473)
....+.+--..|..+.|+++|+++++-.. -+|++||+.....+.....-|. ..| ++++-++.
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~ 342 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS 342 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence 01112223356888999999999987643 5899999976555555544443 111 34444566
Q ss_pred EEEEEeCCCcEEEEecCC
Q 012007 379 LVFSGSADRNICLWRREE 396 (473)
Q Consensus 379 ~l~s~~~dg~i~iwd~~~ 396 (473)
++++|+..+.+++|+...
T Consensus 343 ~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 343 YVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred eEecccccceEEEecCCC
Confidence 999999999999999543
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.1e-15 Score=132.50 Aligned_cols=256 Identities=15% Similarity=0.221 Sum_probs=186.1
Q ss_pred ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee
Q 012007 154 FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233 (473)
Q Consensus 154 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (473)
...+..|.+.|..|.|+..|..|++|+.|..|.+||+........+.- +
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S-------------------------------G 183 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES-------------------------------G 183 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccccc-------------------------------c
Confidence 456778999999999999999999999999999999998876555443 3
Q ss_pred ccCCeeEEEEcC--CCCEEEEEeCCCCEEEEEcCC-Cee--eEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCc
Q 012007 234 HYDAVSCLSLNA--EQGLLYSGSWDKTLKVWRISD-CKC--LESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRE 306 (473)
Q Consensus 234 ~~~~v~~l~~~~--~~~~l~s~s~dg~v~vwd~~~-~~~--~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~ 306 (473)
|...|..-.|-| +..-+++++.||.|++=.+.. +.+ ...+..|.+.|..++.-|+. .|++++.|+.+.-+|++
T Consensus 184 H~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr 263 (559)
T KOG1334|consen 184 HCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLR 263 (559)
T ss_pred cccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeec
Confidence 888888888888 446789999999999887643 322 34456799999999998886 89999999999999998
Q ss_pred ccCCCcceeeeeeeccCCc---cEEEEEEccCC-CEEEEeCCCCcEEEEecCCcccc------cc-----eeecCcceEE
Q 012007 307 LQGKGTKHCLAQVLLKHEN---AVTALAVNQES-AVVYCGSSDGLVNFWECEKHLSH------GG-----VLRGHKMAVL 371 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~---~v~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~------~~-----~~~~~~~~v~ 371 (473)
......... ....+.. ....++.+|.. ..+++++.|..+++||.+.-... .. ........|+
T Consensus 264 ~~~pa~~~~---cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~IT 340 (559)
T KOG1334|consen 264 QDVPAEKFV---CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNIT 340 (559)
T ss_pred cCCccceee---eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccce
Confidence 654322211 2223333 56889999965 48999999999999998642111 11 1112344567
Q ss_pred EEEec--CCEEEEEeCCCcEEEEecCCCCc---------eeEE-EEecCCCC--ceeEEEEe-cCCCCCcccccCCCccE
Q 012007 372 CLAAA--GNLVFSGSADRNICLWRREESGA---------HSCL-AVLTGHTG--PVKCLAVE-EDRDHDHEYHQKGDQRW 436 (473)
Q Consensus 372 ~~~~~--~~~l~s~~~dg~i~iwd~~~~~~---------~~~~-~~~~~h~~--~V~~l~~~-~~~~~~~~~~~~~~~~~ 436 (473)
|+.+. +.-|+++..|-.|++|+-..+.- ...+ ..++||.. .|.++-|- |...
T Consensus 341 gl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE------------- 407 (559)
T KOG1334|consen 341 GLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE------------- 407 (559)
T ss_pred eEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccc-------------
Confidence 77654 66667777788899995443211 0222 33788854 57777665 4444
Q ss_pred EEEEeeCCCcEEEEEcCCCC
Q 012007 437 TVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 437 ~l~s~s~Dg~v~iW~i~~~~ 456 (473)
++++|+.=|.|.||+-..++
T Consensus 408 yVvSGSDCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 408 YVVSGSDCGHIFIWDKKTGE 427 (559)
T ss_pred eEEecCccceEEEEecchhH
Confidence 89999999999999977654
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-15 Score=135.67 Aligned_cols=230 Identities=14% Similarity=0.201 Sum_probs=181.9
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE
Q 012007 161 SGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 240 (473)
.-.-..+.++.+|++|+.|+.-|.|-.+|+.+........ -...|.+
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~---------------------------------v~Etv~D 175 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN---------------------------------VMETVRD 175 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee---------------------------------hhhhhhh
Confidence 3345788999999999999999999999999887655443 4567888
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeee
Q 012007 241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQV 319 (473)
Q Consensus 241 l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 319 (473)
+.|-.+.+++|++- ...++||| ..|..++.++.|. .|..+.|.|.. +|++++..|.++.-|+..++ ++..
T Consensus 176 v~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk------lVa~ 246 (545)
T KOG1272|consen 176 VTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGK------LVAS 246 (545)
T ss_pred hhhhcchHHHHhhh-hceEEEec-CCCcEEeehhhcC-chhhhcccchhheeeecccCCceEEEeechhh------hhHH
Confidence 99988888888776 57899999 5778888888664 68899999998 77788899999999997543 4555
Q ss_pred eccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCC
Q 012007 320 LLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREES 397 (473)
Q Consensus 320 ~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~ 397 (473)
+....+.+..|+-+|-...+-+|..+|+|.+|.......+. .+..|.++|.+++. +|.|++|.+.|..++|||++.
T Consensus 247 ~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLv-KiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~- 324 (545)
T KOG1272|consen 247 IRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLV-KILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRN- 324 (545)
T ss_pred HHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHH-HHHhcCCCcceEEECCCCcEEeecccccceeEeeecc-
Confidence 66667888999999999999999999999999988765554 44568988877775 499999999999999999998
Q ss_pred CceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 398 GAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 398 ~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
...+.++.. .-+...++++..+ +||.+ ....|.||.=
T Consensus 325 --~~ql~t~~t-p~~a~~ls~Sqkg--------------lLA~~-~G~~v~iw~d 361 (545)
T KOG1272|consen 325 --FYQLHTYRT-PHPASNLSLSQKG--------------LLALS-YGDHVQIWKD 361 (545)
T ss_pred --ccccceeec-CCCcccccccccc--------------ceeee-cCCeeeeehh
Confidence 333333333 3457888998876 34444 4457999964
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.4e-13 Score=116.51 Aligned_cols=238 Identities=16% Similarity=0.165 Sum_probs=166.7
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE
Q 012007 161 SGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 240 (473)
...+..+.|+.+...|..|+.|| .++++.+.......... ....|-.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~--------------------------------~~~~IvE 51 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDT--------------------------------EGVSIVE 51 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccC--------------------------------CCeEEEE
Confidence 45677888999998999999998 57787765433111000 1122334
Q ss_pred EEEcCCCCEEEEEeCC--CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeee
Q 012007 241 LSLNAEQGLLYSGSWD--KTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQ 318 (473)
Q Consensus 241 l~~~~~~~~l~s~s~d--g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 318 (473)
+-|+. .+++..+.+ +.+++++++.+..+..+. ....|.++.+..+.+++.- . ..|.|||++.... ...+.
T Consensus 52 mLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~RLvV~L-e-e~IyIydI~~Mkl---LhTI~ 123 (391)
T KOG2110|consen 52 MLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRKRLVVCL-E-ESIYIYDIKDMKL---LHTIE 123 (391)
T ss_pred eeccc--ceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccceEEEEE-c-ccEEEEeccccee---ehhhh
Confidence 44543 455555544 349999998888887776 4567889988766544433 3 3499999974321 11122
Q ss_pred eeccCCccEEEEEEccCCCEEEEe--CCCCcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCc-EEEEe
Q 012007 319 VLLKHENAVTALAVNQESAVVYCG--SSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRN-ICLWR 393 (473)
Q Consensus 319 ~~~~~~~~v~~l~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~-i~iwd 393 (473)
....+...+.++++++.+.+|+-- ...|.|.+||..+- .....+..|.+.+.|+++ +|.+||++++.|+ |+||.
T Consensus 124 t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl-~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~ 202 (391)
T KOG2110|consen 124 TTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL-QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFS 202 (391)
T ss_pred ccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc-eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEE
Confidence 233456668888888888888763 34689999999874 444667799998877765 6999999999997 78999
Q ss_pred cCCCCceeEEEEecCC--CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 394 REESGAHSCLAVLTGH--TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 394 ~~~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
+.++ +.+..++.- ...|.+|+|+++.+ +|++.|..++|.|+++....
T Consensus 203 v~~G---~kl~eFRRG~~~~~IySL~Fs~ds~-------------~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 203 VPEG---QKLYEFRRGTYPVSIYSLSFSPDSQ-------------FLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred cCCc---cEeeeeeCCceeeEEEEEEECCCCC-------------eEEEecCCCeEEEEEecccc
Confidence 9884 555555432 34689999999999 89999999999999998654
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.5e-14 Score=135.28 Aligned_cols=192 Identities=11% Similarity=0.079 Sum_probs=129.3
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCC---CCEEEEEcCCCee--eEEeecCCCceeEEEEcCCC-EEEEE-eCCCcEEEEeCc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWD---KTLKVWRISDCKC--LESINAHDDAINSVVAGFDS-LVFTG-SADGTVKVWRRE 306 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~d---g~v~vwd~~~~~~--~~~~~~~~~~v~~l~~~~~~-~l~s~-~~dg~i~vwd~~ 306 (473)
|...+....|+|+|+.|+.++.+ ..|++||+.+++. +..+.+ ....+.|+|++ .|+.+ +.+|.+.||.++
T Consensus 202 ~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 278 (429)
T PRK01742 202 SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPDGSRLAFASSKDGVLNIYVMG 278 (429)
T ss_pred CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCCCCEEEEEEecCCcEEEEEEE
Confidence 67789999999999999888754 3699999988754 333333 34468999998 55554 568877777544
Q ss_pred ccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe-CCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeC
Q 012007 307 LQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG-SSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSA 385 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~ 385 (473)
.... ....+..+...+....|+|||+.|+.. ..+|...||++.........+ .+......++++|++|+..+.
T Consensus 279 ~~~~-----~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~~~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 279 ANGG-----TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRGYSAQISADGKTLVMING 352 (429)
T ss_pred CCCC-----CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCCCCccCCCCCCEEEEEcC
Confidence 2111 123344566678899999999976654 467888888765322211222 232233567889999988877
Q ss_pred CCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 386 DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 386 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
++ +.+||+.++.. ..+ ...+ ....+.|+|+++ +|+.++.++.+.+|.+.
T Consensus 353 ~~-i~~~Dl~~g~~-~~l--t~~~--~~~~~~~sPdG~-------------~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 353 DN-VVKQDLTSGST-EVL--SSTF--LDESPSISPNGI-------------MIIYSSTQGLGKVLQLV 401 (429)
T ss_pred CC-EEEEECCCCCe-EEe--cCCC--CCCCceECCCCC-------------EEEEEEcCCCceEEEEE
Confidence 65 66699987432 111 1222 235688999998 78888889999888864
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.5e-12 Score=109.16 Aligned_cols=228 Identities=15% Similarity=0.256 Sum_probs=148.4
Q ss_pred EEEe--cCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEE-EeCC------CeEEEEeCCCCCee
Q 012007 128 SLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFT-GHQD------GKIRIWKVSRKNAS 196 (473)
Q Consensus 128 ~~~~--~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s-~~~d------g~i~vwd~~~~~~~ 196 (473)
++++ |...+++|.++| .+||+.. ++...-..+.+.+.-+..--..++|+- ||.+ ..|.|||=......
T Consensus 10 svs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i 88 (346)
T KOG2111|consen 10 SVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCI 88 (346)
T ss_pred EEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEE
Confidence 3554 455777777765 7999755 222222222222222222223345553 3332 46999993333322
Q ss_pred eEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC-CCeeeEEeec
Q 012007 197 VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS-DCKCLESINA 275 (473)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~-~~~~~~~~~~ 275 (473)
. .+....+|..+.+.++ .+++.- .+.|+||... +.+.++.+..
T Consensus 89 ~---------------------------------el~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et 132 (346)
T KOG2111|consen 89 I---------------------------------ELSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIET 132 (346)
T ss_pred E---------------------------------EEEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeec
Confidence 2 2236788999999764 566655 5789999987 5566666653
Q ss_pred CC--CceeEEEEcCCC-EEE-EEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCc-EEE
Q 012007 276 HD--DAINSVVAGFDS-LVF-TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGL-VNF 350 (473)
Q Consensus 276 ~~--~~v~~l~~~~~~-~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~-i~i 350 (473)
.. ..+.+++-..+. +|+ =|-.-|.|+|-|+..... ........|.+.|.|++.+.+|.++|+++..|+ |+|
T Consensus 133 ~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~----~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRI 208 (346)
T KOG2111|consen 133 RSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKP----NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRI 208 (346)
T ss_pred ccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCc----CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEE
Confidence 22 223333322233 333 456679999999974321 134678899999999999999999999999996 799
Q ss_pred EecCCcccccceeecCc-ceEEE--EEecCCEEEEEeCCCcEEEEecCC
Q 012007 351 WECEKHLSHGGVLRGHK-MAVLC--LAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 351 wd~~~~~~~~~~~~~~~-~~v~~--~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
||..++..+....+|-. ..+.| ++++..+|++++..|+|+||.++.
T Consensus 209 Fdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 209 FDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 99998877765555533 34444 556799999999999999999875
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-12 Score=111.80 Aligned_cols=243 Identities=13% Similarity=0.239 Sum_probs=159.2
Q ss_pred cEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEE
Q 012007 163 LVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS 242 (473)
Q Consensus 163 ~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 242 (473)
....++|+.|...++.|..+| .+||+.+--+....... +...+.-+.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~--------------------------------~~~G~~~ve 53 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQF--------------------------------IDGGFKIVE 53 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhcc--------------------------------ccCchhhhh
Confidence 345699999998888887776 89999876332211111 111111111
Q ss_pred EcCCCCEEE-EEeCC------CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCccee
Q 012007 243 LNAEQGLLY-SGSWD------KTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHC 315 (473)
Q Consensus 243 ~~~~~~~l~-s~s~d------g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 315 (473)
.--..++|+ +|+.+ ..|.|||=...+++.++. ...+|.++.+.++..+++ .++.|.||.....- ....
T Consensus 54 MLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~-f~~~I~~V~l~r~riVvv--l~~~I~VytF~~n~--k~l~ 128 (346)
T KOG2111|consen 54 MLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELS-FNSEIKAVKLRRDRIVVV--LENKIYVYTFPDNP--KLLH 128 (346)
T ss_pred HhhhhceEEEecCCCCCCCCCceEEEEecccCcEEEEEE-eccceeeEEEcCCeEEEE--ecCeEEEEEcCCCh--hhee
Confidence 111223333 33322 469999977777887776 567899999988764443 46889999875221 1111
Q ss_pred eeeeeccCCccEEEEEEccCCCEEEE-eCCCCcEEEEecCCccc-ccceeecCcceEEEEEe--cCCEEEEEeCCCc-EE
Q 012007 316 LAQVLLKHENAVTALAVNQESAVVYC-GSSDGLVNFWECEKHLS-HGGVLRGHKMAVLCLAA--AGNLVFSGSADRN-IC 390 (473)
Q Consensus 316 ~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~-i~ 390 (473)
...+ ......+.+++-+.+..+|+. |-.-|.|.|-|+..... .......|...|.|++- +|.++|+++..|+ |+
T Consensus 129 ~~et-~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIR 207 (346)
T KOG2111|consen 129 VIET-RSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIR 207 (346)
T ss_pred eeec-ccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEE
Confidence 1111 121223444443334455555 44568999999976444 34678899999988875 5999999999997 89
Q ss_pred EEecCCCCceeEEEEecC--CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 391 LWRREESGAHSCLAVLTG--HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 391 iwd~~~~~~~~~~~~~~~--h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
|||..++ ..+..++. ....|.+|+|+|+.. +|+.+|+-|+|.|+.+.......+
T Consensus 208 IFdt~~g---~~l~E~RRG~d~A~iy~iaFSp~~s-------------~LavsSdKgTlHiF~l~~~~~~~~ 263 (346)
T KOG2111|consen 208 IFDTEDG---TLLQELRRGVDRADIYCIAFSPNSS-------------WLAVSSDKGTLHIFSLRDTENTED 263 (346)
T ss_pred EEEcCCC---cEeeeeecCCchheEEEEEeCCCcc-------------EEEEEcCCCeEEEEEeecCCCCcc
Confidence 9999995 44444432 234799999999998 899999999999999987554333
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.6e-13 Score=130.84 Aligned_cols=232 Identities=11% Similarity=0.039 Sum_probs=148.5
Q ss_pred CcEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCC---CeEEEEeCCCCCeeeEEeeccccccceeEeecCCCc
Q 012007 143 KNIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQD---GKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPK 218 (473)
Q Consensus 143 g~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (473)
..|.+||.. .....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++......
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~------------------ 245 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS------------------ 245 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc------------------
Confidence 368888865 3345566677889999999999999987743 469999998765322111
Q ss_pred ceEEEeecceeeEeeccCCeeEEEEcCCCCEEE-EEeCCC--CEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEE
Q 012007 219 NYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLY-SGSWDK--TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTG 294 (473)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~s~dg--~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~ 294 (473)
......+..|+|+|+.|+ +.+.+| .|++||+.+++.. .+..+........|+|++ .|+.+
T Consensus 246 ---------------~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~ 309 (433)
T PRK04922 246 ---------------FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFT 309 (433)
T ss_pred ---------------CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEE
Confidence 223345789999998775 445555 5999999887653 444455555678999998 45544
Q ss_pred e-CCCc--EEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC---cEEEEecCCcccccceeecCcc
Q 012007 295 S-ADGT--VKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG---LVNFWECEKHLSHGGVLRGHKM 368 (473)
Q Consensus 295 ~-~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~ 368 (473)
+ .+|. |.++|+..+. . ..+..+.......+|+|+|++|+..+.++ .|.+||+.++... ....+...
T Consensus 310 sd~~g~~~iy~~dl~~g~---~----~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~ 381 (433)
T PRK04922 310 SDRGGRPQIYRVAASGGS---A----ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLD 381 (433)
T ss_pred ECCCCCceEEEEECCCCC---e----EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCC
Confidence 4 4555 4445543211 1 11112223345689999999988765433 5899998765432 22222222
Q ss_pred eEEEEEecCCEEEEEeCC---CcEEEEecCCCCceeEEEEecCCCCceeEEEEec
Q 012007 369 AVLCLAAAGNLVFSGSAD---RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEE 420 (473)
Q Consensus 369 ~v~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~ 420 (473)
.-..++++|++|+..+.+ +.|.++++.. .....+..+.+.+...+|+|
T Consensus 382 ~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g----~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 382 ESPSFAPNGSMVLYATREGGRGVLAAVSTDG----RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCceECCCCCEEEEEEecCCceEEEEEECCC----CceEEcccCCCCCCCCccCC
Confidence 335788999988776653 3577777754 23344445556677788876
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.9e-13 Score=119.46 Aligned_cols=249 Identities=11% Similarity=0.139 Sum_probs=176.3
Q ss_pred EEEEeeCCCcEEEeeCCcc--------ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccc
Q 012007 135 LLYTGSDSKNIRVWKNLKE--------FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPT 206 (473)
Q Consensus 135 ~l~tg~~dg~i~vwd~~~~--------~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 206 (473)
.|...+.|..+..+...+. +.......+.|..++.... .|++|-.+|.+.+|....+.....
T Consensus 71 vl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg--~Litc~~sG~l~~~~~k~~d~hss-------- 140 (412)
T KOG3881|consen 71 VLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADG--TLITCVSSGNLQVRHDKSGDLHSS-------- 140 (412)
T ss_pred EeeccccCcccccccccCCccccccccccccccccccccchhhcCC--EEEEEecCCcEEEEeccCCccccc--------
Confidence 4544445556665543321 2233445677877777543 899999999999999986643210
Q ss_pred cceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCC-CEEEEEeCC--CCEEEEEcCCCeeeEEeecCC------
Q 012007 207 FKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQ-GLLYSGSWD--KTLKVWRISDCKCLESINAHD------ 277 (473)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~s~d--g~v~vwd~~~~~~~~~~~~~~------ 277 (473)
...+......+..+.-++.. .++++|+.. ..+.+||+++.+.+.+-+.-.
T Consensus 141 ---------------------~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~L 199 (412)
T KOG3881|consen 141 ---------------------KLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGL 199 (412)
T ss_pred ---------------------cceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccc
Confidence 01111233455566666644 455668888 789999999886665543211
Q ss_pred ---CceeEEEEcCC--C-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEE
Q 012007 278 ---DAINSVVAGFD--S-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFW 351 (473)
Q Consensus 278 ---~~v~~l~~~~~--~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iw 351 (473)
-.++++.|.++ . .|++++.-+.+++||.+. ...++..+.-.+.+++++...|.++++++|..-|.+..|
T Consensus 200 rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~-----qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~F 274 (412)
T KOG3881|consen 200 RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRH-----QRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKF 274 (412)
T ss_pred eeeeeeccceecCCCCCceEEEEecceeEEEecCcc-----cCcceeEeccccCcceeeeecCCCcEEEEecccchhhee
Confidence 13556677666 3 899999999999999983 444566666678899999999999999999999999999
Q ss_pred ecCCcccccceeecCcceEEEEEec--CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 352 ECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 352 d~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
|++++......+.+..+.+..+... ..+|++++-|..|+|+|+.+ ..++.... -...+++|.+.++-+
T Consensus 275 D~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt---rkll~kvY-vKs~lt~il~~~~~n 344 (412)
T KOG3881|consen 275 DLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT---RKLLHKVY-VKSRLTFILLRDDVN 344 (412)
T ss_pred cccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc---chhhhhhh-hhccccEEEecCCcc
Confidence 9999888877788889999888765 46999999999999999998 33333221 234567777766543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.1e-13 Score=129.29 Aligned_cols=246 Identities=11% Similarity=0.073 Sum_probs=152.5
Q ss_pred cCCEEEEeeCC--CcEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCC---CeEEEEeCCCCCeeeEEeecccc
Q 012007 132 SGDLLYTGSDS--KNIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQD---GKIRIWKVSRKNASVHKRVGSLP 205 (473)
Q Consensus 132 ~g~~l~tg~~d--g~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~ 205 (473)
++++.++.... ..|.+||.. .....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++......
T Consensus 163 ~~~iayv~~~~~~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~----- 237 (427)
T PRK02889 163 STRIAYVIKTGNRYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN----- 237 (427)
T ss_pred ccEEEEEEccCCccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec-----
Confidence 34444444333 356666654 3334555677889999999999999877643 359999998775432211
Q ss_pred ccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEE-EEeCCCCEEEEEc--CCCeeeEEeecCCCceeE
Q 012007 206 TFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLY-SGSWDKTLKVWRI--SDCKCLESINAHDDAINS 282 (473)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~s~dg~v~vwd~--~~~~~~~~~~~~~~~v~~ 282 (473)
....+.+..|+|||+.|+ +.+.++...||.+ ..+. +..+..+......
T Consensus 238 ----------------------------~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~ 288 (427)
T PRK02889 238 ----------------------------FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTE 288 (427)
T ss_pred ----------------------------CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcC
Confidence 223456789999999876 5677787666654 4443 4455555555667
Q ss_pred EEEcCCC-EEE-EEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC---cEEEEecCCcc
Q 012007 283 VVAGFDS-LVF-TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG---LVNFWECEKHL 357 (473)
Q Consensus 283 l~~~~~~-~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg---~i~iwd~~~~~ 357 (473)
..|+|++ .|+ +...+|...+|.+..... .. ..+..........+|+|+|++|+..+.++ .|.+||+.++.
T Consensus 289 ~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g--~~---~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~ 363 (427)
T PRK02889 289 PFFSPDGRSIYFTSDRGGAPQIYRMPASGG--AA---QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ 363 (427)
T ss_pred eEEcCCCCEEEEEecCCCCcEEEEEECCCC--ce---EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC
Confidence 8899998 454 444457777887653221 11 11111122344678999999988766554 59999987654
Q ss_pred cccceeecCcceEEEEEecCCEEEEEeCCC-c--EEEEecCCCCceeEEEEecCCCCceeEEEEecC
Q 012007 358 SHGGVLRGHKMAVLCLAAAGNLVFSGSADR-N--ICLWRREESGAHSCLAVLTGHTGPVKCLAVEED 421 (473)
Q Consensus 358 ~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg-~--i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 421 (473)
.. ....+.......++++|++|+.++.++ . +.+.++.. .....+..+.+.+...+|+|-
T Consensus 364 ~~-~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g----~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 364 VT-ALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG----RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eE-EccCCCCccCceECCCCCEEEEEEecCCCEEEEEEECCC----CceEEeecCCCCCCCCccCCC
Confidence 32 222222334467889999888777554 3 44445532 334444456677788888874
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-12 Score=112.60 Aligned_cols=291 Identities=13% Similarity=0.161 Sum_probs=176.1
Q ss_pred EEEEEecCC--EEEEeeCCCcEEEeeCC-cccccccc-CcccEEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCeeeEE-
Q 012007 126 IYSLAASGD--LLYTGSDSKNIRVWKNL-KEFSGFKS-NSGLVKAIIISGDS-NKIFTGHQDGKIRIWKVSRKNASVHK- 199 (473)
Q Consensus 126 V~~~~~~g~--~l~tg~~dg~i~vwd~~-~~~~~~~~-h~~~V~~l~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~- 199 (473)
+.-++++.. -+|++..|-.|++||.. +....++. -...|+|++|-|.+ +-|+.|+..| |.+|..+........
T Consensus 101 lr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~ 179 (445)
T KOG2139|consen 101 LRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNI 179 (445)
T ss_pred eeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccccccc
Confidence 344555544 47788889999999855 33334443 24679999999975 5677777665 889987654221110
Q ss_pred eeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC-CCCEEEEEcCCCeeeEEeecCCC
Q 012007 200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISDCKCLESINAHDD 278 (473)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~~~ 278 (473)
..... .......-.+| ..|++|.|.+||..+++++. |..|.|||..++..+.......+
T Consensus 180 ~~~s~-------------------~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg 239 (445)
T KOG2139|consen 180 RMMST-------------------HHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG 239 (445)
T ss_pred ccccc-------------------cchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCC
Confidence 00000 00000011123 78999999999999999984 56799999999988776655667
Q ss_pred ceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcc
Q 012007 279 AINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHL 357 (473)
Q Consensus 279 ~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~ 357 (473)
.+.-+.|+|++ +|+++.-|+..++|+.. ..........+ .+.|...+|+|+|++|+..+. |.-++|.+.-..
T Consensus 240 g~slLkwSPdgd~lfaAt~davfrlw~e~-----q~wt~erw~lg-sgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~ 312 (445)
T KOG2139|consen 240 GFSLLKWSPDGDVLFAATCDAVFRLWQEN-----QSWTKERWILG-SGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDG 312 (445)
T ss_pred ceeeEEEcCCCCEEEEecccceeeeehhc-----ccceecceecc-CCceeeeeecCCCCEEEEEEc-CCceEEEEeecC
Confidence 88999999998 89999999999999654 22222222222 348999999999987665443 233444432100
Q ss_pred cc-------------------------cceeecCcceEEEEEecCCEEEEEeCCC--------cEEEEecCCCCceeEEE
Q 012007 358 SH-------------------------GGVLRGHKMAVLCLAAAGNLVFSGSADR--------NICLWRREESGAHSCLA 404 (473)
Q Consensus 358 ~~-------------------------~~~~~~~~~~v~~~~~~~~~l~s~~~dg--------~i~iwd~~~~~~~~~~~ 404 (473)
+. ...+-+.....+++.|.|.+|++.-..+ .|.+||.+.........
T Consensus 313 ~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~ 392 (445)
T KOG2139|consen 313 EDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSY 392 (445)
T ss_pred CCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEe
Confidence 00 0011122223345556699999876544 37778877633222221
Q ss_pred EecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 405 VLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 405 ~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
.-......-.-|.|+|..+ +++ +|..+=..|.+.-|.+.-
T Consensus 393 cg~i~ge~P~~IsF~pl~n---------~g~-lLsiaWsTGriq~ypl~f 432 (445)
T KOG2139|consen 393 CGMIGGEYPAYISFGPLKN---------EGR-LLSIAWSTGRIQRYPLTF 432 (445)
T ss_pred cccccCCCCceEEeeeccc---------CCc-EEEEEeccCceEeeeeEE
Confidence 1011112245677777543 122 444444567777777653
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.4e-12 Score=119.83 Aligned_cols=269 Identities=10% Similarity=0.109 Sum_probs=166.5
Q ss_pred CCEE-EEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccce
Q 012007 133 GDLL-YTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKD 209 (473)
Q Consensus 133 g~~l-~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 209 (473)
++++ ++-..+|.|.|.|.. +.+..+......-..+.|++||+++++++.||.|.++|+.+.+.......
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-------- 76 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-------- 76 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE---------
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec--------
Confidence 3444 455668999999975 44556655444445578999999999999999999999999987665553
Q ss_pred eEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEEeecC-------CCcee
Q 012007 210 YVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAH-------DDAIN 281 (473)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~-------~~~v~ 281 (473)
......+++++||++++++. ..+.+.++|.++.+.+..+... ...+.
T Consensus 77 -------------------------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~ 131 (369)
T PF02239_consen 77 -------------------------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVA 131 (369)
T ss_dssp -------------------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EE
T ss_pred -------------------------CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCce
Confidence 34467899999999999876 6899999999999999888643 23566
Q ss_pred EEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe-CCCCcEEEEecCCccc
Q 012007 282 SVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG-SSDGLVNFWECEKHLS 358 (473)
Q Consensus 282 ~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~ 358 (473)
.+..++.. ++++.-..+.|-+.|.... ..+...............|+|++++++++ ..+..|-++|.++...
T Consensus 132 aIv~s~~~~~fVv~lkd~~~I~vVdy~d~-----~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~ 206 (369)
T PF02239_consen 132 AIVASPGRPEFVVNLKDTGEIWVVDYSDP-----KNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL 206 (369)
T ss_dssp EEEE-SSSSEEEEEETTTTEEEEEETTTS-----SCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred eEEecCCCCEEEEEEccCCeEEEEEeccc-----cccceeeecccccccccccCcccceeeecccccceeEEEeeccceE
Confidence 77776665 4445555688888886532 12222333345567789999999987664 5567899999887544
Q ss_pred ccceee---cCcceEEE-----------EEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCC
Q 012007 359 HGGVLR---GHKMAVLC-----------LAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDH 424 (473)
Q Consensus 359 ~~~~~~---~~~~~v~~-----------~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 424 (473)
...... .|...... ....+.+.++.-....+.+||... ++.++.+....++ .-+..+|+++
T Consensus 207 v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~---wkvv~~I~~~G~g-lFi~thP~s~- 281 (369)
T PF02239_consen 207 VALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA---WKVVKTIPTQGGG-LFIKTHPDSR- 281 (369)
T ss_dssp EEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB---TSEEEEEE-SSSS---EE--TT-S-
T ss_pred EEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhc---CeEEEEEECCCCc-ceeecCCCCc-
Confidence 322211 23323322 222333332332334566777776 7788888776666 7888899998
Q ss_pred CcccccCCCccEEEEEe----eCCCcEEEEEcCCCC
Q 012007 425 DHEYHQKGDQRWTVYSG----SLDKSVKVWRVSEHA 456 (473)
Q Consensus 425 ~~~~~~~~~~~~~l~s~----s~Dg~v~iW~i~~~~ 456 (473)
+++.. ...++|.++|..+.+
T Consensus 282 ------------~vwvd~~~~~~~~~v~viD~~tl~ 305 (369)
T PF02239_consen 282 ------------YVWVDTFLNPDADTVQVIDKKTLK 305 (369)
T ss_dssp ------------EEEEE-TT-SSHT-EEEEECCGTE
T ss_pred ------------cEEeeccCCCCCceEEEEECcCcc
Confidence 56555 556899999998873
|
... |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.6e-13 Score=118.85 Aligned_cols=213 Identities=11% Similarity=0.145 Sum_probs=159.3
Q ss_pred eeeeecccEEEEEecCCEEEEeeCCCcEEEeeCC------ccccccccCcccEEEEEEeCCCC-EEEEEeCC--CeEEEE
Q 012007 118 SIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNL------KEFSGFKSNSGLVKAIIISGDSN-KIFTGHQD--GKIRIW 188 (473)
Q Consensus 118 ~l~~h~~~V~~~~~~g~~l~tg~~dg~i~vwd~~------~~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~d--g~i~vw 188 (473)
+.....+.|..+......|++|-.+|.+.+|... ..+..+..+ ..+..+.-++... .+++||.. ..+.+|
T Consensus 100 ~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiw 178 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIW 178 (412)
T ss_pred ccccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeee
Confidence 3344567777888777788999999999999755 222233333 4466666666554 45568888 889999
Q ss_pred eCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC--CCEEEEEeCCCCEEEEEcCC
Q 012007 189 KVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE--QGLLYSGSWDKTLKVWRISD 266 (473)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~s~s~dg~v~vwd~~~ 266 (473)
|++..+.+. .....+.. .+ -+.-.-.++++.|-+. ...|++++.-+.|++||.+.
T Consensus 179 dle~~~qiw--~aKNvpnD------------~L---------~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~ 235 (412)
T KOG3881|consen 179 DLEQSKQIW--SAKNVPND------------RL---------GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRH 235 (412)
T ss_pred ecccceeee--eccCCCCc------------cc---------cceeeeeeccceecCCCCCceEEEEecceeEEEecCcc
Confidence 998774332 22222110 00 0012235677888887 78999999999999999986
Q ss_pred C-eeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC
Q 012007 267 C-KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS 344 (473)
Q Consensus 267 ~-~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~ 344 (473)
+ +++..+..-..+++++...|++ ++++|..-|.+..+|++ ....+...+.+..+.|++|..+|.+.+|++++.
T Consensus 236 qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r-----~~kl~g~~~kg~tGsirsih~hp~~~~las~GL 310 (412)
T KOG3881|consen 236 QRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLR-----GGKLLGCGLKGITGSIRSIHCHPTHPVLASCGL 310 (412)
T ss_pred cCcceeEeccccCcceeeeecCCCcEEEEecccchhheeccc-----CceeeccccCCccCCcceEEEcCCCceEEeecc
Confidence 5 5778888788899999998887 89999999999999998 444455567888999999999999999999999
Q ss_pred CCcEEEEecCCcccc
Q 012007 345 DGLVNFWECEKHLSH 359 (473)
Q Consensus 345 dg~i~iwd~~~~~~~ 359 (473)
|..|+|+|+++...+
T Consensus 311 DRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 311 DRYVRIHDIKTRKLL 325 (412)
T ss_pred ceeEEEeecccchhh
Confidence 999999999984443
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-14 Score=119.35 Aligned_cols=156 Identities=20% Similarity=0.377 Sum_probs=124.8
Q ss_pred ecccEEEEEec---CC--EEEEeeCCCcEEEeeCCcc------------ccccccCcccEEEEEEeCCCCEEEEEeCCCe
Q 012007 122 KEGHIYSLAAS---GD--LLYTGSDSKNIRVWKNLKE------------FSGFKSNSGLVKAIIISGDSNKIFTGHQDGK 184 (473)
Q Consensus 122 h~~~V~~~~~~---g~--~l~tg~~dg~i~vwd~~~~------------~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~ 184 (473)
..|.|.|+.++ +. +|++|-++|.|.+||.... ......|..+|.++.+.+.-..=++|+.+..
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk 228 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK 228 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence 45778888854 33 6778888999999996532 3345679999999999877666778888889
Q ss_pred EEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEc
Q 012007 185 IRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264 (473)
Q Consensus 185 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~ 264 (473)
+..|+++........... ..+ ..-.|..+.+-||++.++++++|+.|+||..
T Consensus 229 l~~~Sl~~s~gslq~~~e---------------------------~~l-knpGv~gvrIRpD~KIlATAGWD~RiRVysw 280 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKE---------------------------ITL-KNPGVSGVRIRPDGKILATAGWDHRIRVYSW 280 (323)
T ss_pred ceeeeeccccCcccccce---------------------------EEe-cCCCccceEEccCCcEEeecccCCcEEEEEe
Confidence 999998765322111100 000 3345788899999999999999999999999
Q ss_pred CCCeeeEEeecCCCceeEEEEcCC-CEEEEEeCCCcEEEEeC
Q 012007 265 SDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVWRR 305 (473)
Q Consensus 265 ~~~~~~~~~~~~~~~v~~l~~~~~-~~l~s~~~dg~i~vwd~ 305 (473)
++.+++..++-|.+.|++++|+|+ +++++++.|+.|.+|++
T Consensus 281 rtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 281 RTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999 69999999999999986
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.4e-13 Score=124.54 Aligned_cols=192 Identities=16% Similarity=0.178 Sum_probs=132.6
Q ss_pred CCEEEEeeCCCcEEEeeCCc-ccccc-----ccCcccEEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCeeeEEeecccc
Q 012007 133 GDLLYTGSDSKNIRVWKNLK-EFSGF-----KSNSGLVKAIIISGDS-NKIFTGHQDGKIRIWKVSRKNASVHKRVGSLP 205 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~~-~~~~~-----~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 205 (473)
+--|..|-.-|.|.+.|... .+..+ .-.+..|+|+.|-|.+ ..++.+..+|.+.+||..-...........+.
T Consensus 185 g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k 264 (636)
T KOG2394|consen 185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALK 264 (636)
T ss_pred CcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccC
Confidence 44577777778888887542 22221 1134789999998854 46666788999999987322111111111111
Q ss_pred ccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEE
Q 012007 206 TFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVA 285 (473)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~ 285 (473)
....+...... -...+.....+.--...|..++|+|||++||+.+.||.++|+|..+.+.+..++.--+...|++|
T Consensus 265 ~~~~f~i~t~k----sk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcW 340 (636)
T KOG2394|consen 265 DGDQFAILTSK----SKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCW 340 (636)
T ss_pred CCCeeEEeeee----ccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEE
Confidence 10000000000 00011122223334568999999999999999999999999999998888888877789999999
Q ss_pred cCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc
Q 012007 286 GFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ 334 (473)
Q Consensus 286 ~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 334 (473)
+||+ +|++|+.|..|.||.+. ....+..-.+|++.|..++|.|
T Consensus 341 SPDGKyIvtGGEDDLVtVwSf~------erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 341 SPDGKYIVTGGEDDLVTVWSFE------ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cCCccEEEecCCcceEEEEEec------cceEEEeccccccceeeEeecc
Confidence 9999 99999999999999985 4456778899999999999997
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-12 Score=112.17 Aligned_cols=237 Identities=14% Similarity=0.189 Sum_probs=157.3
Q ss_pred cccEEEEEec---CCEEEEeeCCCcEEEeeCCcc----------------ccccccCcccEEEEEEeCCCCEEEEEeC-C
Q 012007 123 EGHIYSLAAS---GDLLYTGSDSKNIRVWKNLKE----------------FSGFKSNSGLVKAIIISGDSNKIFTGHQ-D 182 (473)
Q Consensus 123 ~~~V~~~~~~---g~~l~tg~~dg~i~vwd~~~~----------------~~~~~~h~~~V~~l~~s~~~~~l~s~~~-d 182 (473)
+..|.|+++- +.-|+.|+.. -|.+|..... +....+| .+|+.++|.+||..|++++. |
T Consensus 140 QrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gs 217 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGS 217 (445)
T ss_pred hcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCc
Confidence 3457888863 6789999985 5899953211 1122334 68999999999999999886 5
Q ss_pred CeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEE
Q 012007 183 GKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVW 262 (473)
Q Consensus 183 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vw 262 (473)
..|.|||.+++........ ..+.++-+.|+||+.+|+++.-|+..++|
T Consensus 218 ssi~iWdpdtg~~~pL~~~--------------------------------glgg~slLkwSPdgd~lfaAt~davfrlw 265 (445)
T KOG2139|consen 218 SSIMIWDPDTGQKIPLIPK--------------------------------GLGGFSLLKWSPDGDVLFAATCDAVFRLW 265 (445)
T ss_pred ceEEEEcCCCCCccccccc--------------------------------CCCceeeEEEcCCCCEEEEecccceeeee
Confidence 7899999999876544321 44678889999999999999999999999
Q ss_pred EcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCc---------ceeeeeee-----cc----
Q 012007 263 RISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGT---------KHCLAQVL-----LK---- 322 (473)
Q Consensus 263 d~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~---------~~~~~~~~-----~~---- 322 (473)
+..............+.|...+|+|+| +|++++..- ++|.+...++.. ...+...+ ..
T Consensus 266 ~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l 343 (445)
T KOG2139|consen 266 QENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRL 343 (445)
T ss_pred hhcccceecceeccCCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCccc
Confidence 765443333333445589999999999 555555444 444443222111 00111111 11
Q ss_pred CCccEEEEEEccCCCEEEEeCCCC--------cEEEEecCCccccc----ceeecCcceEEEEEe---cCCEEEEEeCCC
Q 012007 323 HENAVTALAVNQESAVVYCGSSDG--------LVNFWECEKHLSHG----GVLRGHKMAVLCLAA---AGNLVFSGSADR 387 (473)
Q Consensus 323 ~~~~v~~l~~~~~~~~l~~~~~dg--------~i~iwd~~~~~~~~----~~~~~~~~~v~~~~~---~~~~l~s~~~dg 387 (473)
-.+.+.+++|.|.|.+|++....+ .|.+||.+...... ....+..-...+|.+ ++.+|..+=..|
T Consensus 344 ~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTG 423 (445)
T KOG2139|consen 344 CCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTG 423 (445)
T ss_pred ccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccC
Confidence 145788999999999999876544 36778876532221 122233334456665 377888887888
Q ss_pred cEEEEecC
Q 012007 388 NICLWRRE 395 (473)
Q Consensus 388 ~i~iwd~~ 395 (473)
.|.-|++.
T Consensus 424 riq~ypl~ 431 (445)
T KOG2139|consen 424 RIQRYPLT 431 (445)
T ss_pred ceEeeeeE
Confidence 88888764
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.7e-12 Score=124.90 Aligned_cols=231 Identities=7% Similarity=-0.027 Sum_probs=148.3
Q ss_pred cEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeC---CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcc
Q 012007 144 NIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQ---DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKN 219 (473)
Q Consensus 144 ~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (473)
.|.+||.. .....+..|...+.+.+|+|||+.|+..+. +..|.+||+.++......
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~-------------------- 242 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG-------------------- 242 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee--------------------
Confidence 67777754 334556678889999999999999888764 468999999877542211
Q ss_pred eEEEeecceeeEeeccCCeeEEEEcCCCCEEE-EEeCCCC--EEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEe
Q 012007 220 YVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLY-SGSWDKT--LKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGS 295 (473)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~s~dg~--v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~ 295 (473)
.+...+...+|+|||+.|+ +.+.++. |++||+.+++. ..+..+........|+|++ .|+..+
T Consensus 243 -------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s 308 (435)
T PRK05137 243 -------------NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFES 308 (435)
T ss_pred -------------cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEE
Confidence 1445667889999998775 5555555 77789887765 4455555666778999998 455444
Q ss_pred -CCC--cEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC---CcEEEEecCCcccccceeecCcce
Q 012007 296 -ADG--TVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD---GLVNFWECEKHLSHGGVLRGHKMA 369 (473)
Q Consensus 296 -~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~ 369 (473)
.+| .|.+||+..+. ...+..+...+....|+|+|+.|+....+ ..|.+||+...... ....+....
T Consensus 309 ~~~g~~~Iy~~d~~g~~-------~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~~~~~~ 380 (435)
T PRK05137 309 DRSGSPQLYVMNADGSN-------PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTSGFLVE 380 (435)
T ss_pred CCCCCCeEEEEECCCCC-------eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-eccCCCCCC
Confidence 344 56677764221 11222234456678899999998876543 35888887543321 122223334
Q ss_pred EEEEEecCCEEEEEeCC------CcEEEEecCCCCceeEEEEecCCCCceeEEEEecC
Q 012007 370 VLCLAAAGNLVFSGSAD------RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEED 421 (473)
Q Consensus 370 v~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 421 (473)
...+++||++|+..+.+ ..+.++|+.... ...+. ..+.+...+|+|-
T Consensus 381 ~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~----~~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 381 GPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN----EREVP-TPGDASDPAWSPL 433 (435)
T ss_pred CCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc----eEEcc-CCCCccCcccCCC
Confidence 46788999988765543 257777776532 12332 2344667777763
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.1e-13 Score=130.26 Aligned_cols=196 Identities=18% Similarity=0.249 Sum_probs=157.6
Q ss_pred CeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCce-e-E--EEEcCCC-EEEEEeCCCcEEEEeCcccCCC
Q 012007 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAI-N-S--VVAGFDS-LVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v-~-~--l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
.|....+..+...++.++.+..+.+||...+..+..+....... . + +-.+++. ++++|+.-+.|.+|+......
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~- 167 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK- 167 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC-
Confidence 34445555677889999999999999998887776665433211 1 1 1234444 899999999999999872221
Q ss_pred cceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEE
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICL 391 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~i 391 (473)
...+.+|++.|.++.++.+|+++++.+.|..+++|++++........-+|...+....+..+.+++++.|-+.++
T Consensus 168 -----p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrv 242 (967)
T KOG0974|consen 168 -----PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGEDCTCRV 242 (967)
T ss_pred -----cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEeccceEEEE
Confidence 126889999999999999999999999999999999999877776778999999888877779999999999999
Q ss_pred EecCCCCceeEEEEecCCCC-ceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 392 WRREESGAHSCLAVLTGHTG-PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 392 wd~~~~~~~~~~~~~~~h~~-~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
|+.+. ..+..+.+|.+ .|..++..++.. .++|++.|+.+++|++...
T Consensus 243 W~~~~----~~l~~y~~h~g~~iw~~~~~~~~~-------------~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 243 WGVNG----TQLEVYDEHSGKGIWKIAVPIGVI-------------IKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred Eeccc----ceehhhhhhhhcceeEEEEcCCce-------------EEEeeccCcchhhhhhhcc
Confidence 97765 45557888854 689999998887 8999999999999998754
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.8e-12 Score=110.81 Aligned_cols=272 Identities=13% Similarity=0.180 Sum_probs=173.0
Q ss_pred cEEEEEecCCEEEEeeCCCcEEEeeCCc-cccccccCcccEEEEEEeCCCCEEE-EEeCCCeEEEEeCCCCCeeeEEeec
Q 012007 125 HIYSLAASGDLLYTGSDSKNIRVWKNLK-EFSGFKSNSGLVKAIIISGDSNKIF-TGHQDGKIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 125 ~V~~~~~~g~~l~tg~~dg~i~vwd~~~-~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~ 202 (473)
...+++++|+++|+++.- .+.|-|... .+..+...-..|.-|.|..|..+++ ....|+.|.+|++...+-.....
T Consensus 12 ~~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId-- 88 (447)
T KOG4497|consen 12 PFCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID-- 88 (447)
T ss_pred CceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec--
Confidence 345899999999999875 666766542 1222222245688899998886655 45678899999998765433222
Q ss_pred cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCC-EEEEEeCCCCEEEEEcCCCeeeEEeecCCCcee
Q 012007 203 SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQG-LLYSGSWDKTLKVWRISDCKCLESINAHDDAIN 281 (473)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~ 281 (473)
.....+..++|+|+|+ +|.+...|-.|.+|.+.+.+... ++-.+..+.
T Consensus 89 ------------------------------eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~k 137 (447)
T KOG4497|consen 89 ------------------------------EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVK 137 (447)
T ss_pred ------------------------------cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCce
Confidence 1556789999999995 56666788899999998766543 333344567
Q ss_pred EEEEcCCCEEEEE-eC------------------------------------CCcEEEEeCcccCCCcceeeeeeeccCC
Q 012007 282 SVVAGFDSLVFTG-SA------------------------------------DGTVKVWRRELQGKGTKHCLAQVLLKHE 324 (473)
Q Consensus 282 ~l~~~~~~~l~s~-~~------------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 324 (473)
.++|++++.+.+- +. +..+.+||.-.. .........
T Consensus 138 g~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le-------ykv~aYe~~ 210 (447)
T KOG4497|consen 138 GYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE-------YKVYAYERG 210 (447)
T ss_pred eEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh-------heeeeeeec
Confidence 7888888743332 21 223445543210 000112223
Q ss_pred ccEEEEEEccCCCEEEEeCCCCcEEEEecCCc---------------c---------c----------------------
Q 012007 325 NAVTALAVNQESAVVYCGSSDGLVNFWECEKH---------------L---------S---------------------- 358 (473)
Q Consensus 325 ~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~---------------~---------~---------------------- 358 (473)
-.+..++|+|.+++|++|+.|+.+++.+--+- . .
T Consensus 211 lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~ 290 (447)
T KOG4497|consen 211 LGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWE 290 (447)
T ss_pred cceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccc
Confidence 57889999999999999999999988652100 0 0
Q ss_pred -----------cc--ceee--------cCcceEEEEEecCCEEEEEeCC--CcEEEEecCCCCceeEEEEecCCCCceeE
Q 012007 359 -----------HG--GVLR--------GHKMAVLCLAAAGNLVFSGSAD--RNICLWRREESGAHSCLAVLTGHTGPVKC 415 (473)
Q Consensus 359 -----------~~--~~~~--------~~~~~v~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~h~~~V~~ 415 (473)
+. ..++ .......++++|..++++-... +.+-+||++.. +.... -....+|..
T Consensus 291 ~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l---~l~av-LiQk~pira 366 (447)
T KOG4497|consen 291 ESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL---KLHAV-LIQKHPIRA 366 (447)
T ss_pred cchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh---hhhhh-hhhccceeE
Confidence 00 0000 0012234566677777776533 56899999882 32222 234678999
Q ss_pred EEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 416 LAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 416 l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
..|+|... .|+.+.....+++|....
T Consensus 367 f~WdP~~p-------------rL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 367 FEWDPGRP-------------RLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred EEeCCCCc-------------eEEEEcCCceEEEEcCCC
Confidence 99999987 455444455799998765
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-11 Score=105.41 Aligned_cols=320 Identities=13% Similarity=0.163 Sum_probs=180.8
Q ss_pred CCCCCcccccccccceeeeee------ec-----ccEEEE--EecCC-EEEEeeCCCcEEEeeCCcc--ccccccCcccE
Q 012007 101 PYSPNENLLSSCNGLIGSIVR------KE-----GHIYSL--AASGD-LLYTGSDSKNIRVWKNLKE--FSGFKSNSGLV 164 (473)
Q Consensus 101 ~~~p~~~~~~~~~~~~~~l~~------h~-----~~V~~~--~~~g~-~l~tg~~dg~i~vwd~~~~--~~~~~~h~~~V 164 (473)
.|+|.++.++++....-.++. |. +.|.-+ +.+.. .|.....|+.|.+|++.+. ...+......+
T Consensus 15 ~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agl 94 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGL 94 (447)
T ss_pred eECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcc
Confidence 356777776665543222221 11 223223 33444 4556677999999997643 34556667889
Q ss_pred EEEEEeCCCCE-EEEEeCCCeEEEEeCCCCCeeeEEeecccc------ccceeE--eecCCCcceEEEeecceeeEee--
Q 012007 165 KAIIISGDSNK-IFTGHQDGKIRIWKVSRKNASVHKRVGSLP------TFKDYV--KSSVNPKNYVEVRRNRSVLKIR-- 233 (473)
Q Consensus 165 ~~l~~s~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-- 233 (473)
.+++|+|||+. |.+...|-.|.||.+.+.+........... ....+. .+..+...++.+.....-...+
T Consensus 95 s~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f 174 (447)
T KOG4497|consen 95 SSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEF 174 (447)
T ss_pred eeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhc
Confidence 99999999954 556677899999999887654332211110 000000 0011111111111000000111
Q ss_pred --ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCccc--
Q 012007 234 --HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQ-- 308 (473)
Q Consensus 234 --~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~-- 308 (473)
.+-..+.+.|+|||+.|+ +||---.-.+..+. -.-.+..+.|+|.+ +++.|+.|+.+++.+--+-
T Consensus 175 ~~dT~DltgieWsPdg~~la---------Vwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~ 244 (447)
T KOG4497|consen 175 KLDTIDLTGIEWSPDGNWLA---------VWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKP 244 (447)
T ss_pred CCCcccccCceECCCCcEEE---------Eecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeee
Confidence 223456677888776655 44421111111111 22467888999966 8899999999987531100
Q ss_pred -C------------------C--------------------------C-cc------------eeeeeeeccCCccEEEE
Q 012007 309 -G------------------K--------------------------G-TK------------HCLAQVLLKHENAVTAL 330 (473)
Q Consensus 309 -~------------------~--------------------------~-~~------------~~~~~~~~~~~~~v~~l 330 (473)
+ + . .. ..+..........+--+
T Consensus 245 f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~l 324 (447)
T KOG4497|consen 245 FGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKL 324 (447)
T ss_pred hhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccccee
Confidence 0 0 0 00 00000111123346678
Q ss_pred EEccCCCEEEEeCC--CCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecC
Q 012007 331 AVNQESAVVYCGSS--DGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTG 408 (473)
Q Consensus 331 ~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 408 (473)
+|++|..++++-.. -+.+-+||++..+........|......+.|....|+.+.....+++|.... ..++..- +
T Consensus 325 afs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg---~~~V~vP-~ 400 (447)
T KOG4497|consen 325 AFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG---PRVVGVP-K 400 (447)
T ss_pred eecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCC---ceEEecC-C
Confidence 99999999887643 3568999998765554444445444444455566777777677899998776 3444432 2
Q ss_pred CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcE
Q 012007 409 HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSV 447 (473)
Q Consensus 409 h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v 447 (473)
..-.|..+.|.-++. .++-.+.|...
T Consensus 401 ~GF~i~~l~W~~~g~-------------~i~l~~kDafc 426 (447)
T KOG4497|consen 401 KGFNIQKLQWLQPGE-------------FIVLCGKDAFC 426 (447)
T ss_pred CCceeeeEEecCCCc-------------EEEEEcCCceE
Confidence 335799999999998 78888888643
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.7e-12 Score=117.10 Aligned_cols=262 Identities=16% Similarity=0.245 Sum_probs=175.5
Q ss_pred EEEEecCCE-EEEeeCCCcEEEeeCCccccccccCc--ccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecc
Q 012007 127 YSLAASGDL-LYTGSDSKNIRVWKNLKEFSGFKSNS--GLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGS 203 (473)
Q Consensus 127 ~~~~~~g~~-l~tg~~dg~i~vwd~~~~~~~~~~h~--~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 203 (473)
..+++||+| +|||..--.|++||+...-..|.-|. ..|.-.-++.|-..++--..|.+|-+-.....- ...++..
T Consensus 57 ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h--y~~RIP~ 134 (703)
T KOG2321|consen 57 IKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH--YRTRIPK 134 (703)
T ss_pred eEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee--eeeecCc
Confidence 456788986 77888899999999887666665553 345545555555556666667666554322111 1111111
Q ss_pred --------ccccceeEeecCCCcceEEEeecceeeEee-ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee
Q 012007 204 --------LPTFKDYVKSSVNPKNYVEVRRNRSVLKIR-HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN 274 (473)
Q Consensus 204 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 274 (473)
.+...-++.........+.+...+.+.-+. ....++++..++...+|++|+.+|.|..||.++...+..+.
T Consensus 135 ~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~ 214 (703)
T KOG2321|consen 135 FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLD 214 (703)
T ss_pred CCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeee
Confidence 011112222233333333333333332222 34789999999999999999999999999998876665553
Q ss_pred c------CCC-----ceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC--CCEEE
Q 012007 275 A------HDD-----AINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE--SAVVY 340 (473)
Q Consensus 275 ~------~~~-----~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~ 340 (473)
. |.+ .|+++.|..++ .+++|+.+|.+.|||++. ...+...-.....+|..+.|.+. +..|+
T Consensus 215 ~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa-----~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~ 289 (703)
T KOG2321|consen 215 AASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRA-----SKPLLVKDHGYELPIKKLDWQDTDQQNKVV 289 (703)
T ss_pred cccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEccc-----CCceeecccCCccceeeecccccCCCceEE
Confidence 2 333 49999999988 799999999999999984 33344444555678899999775 34554
Q ss_pred EeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCC
Q 012007 341 CGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 341 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
+. ....++|||-.++.........+...-.|+-+++.+++++-.++.+..|=+..
T Consensus 290 S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 290 SM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred ec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 44 45689999998887766666666666788889999999999998888776654
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.5e-13 Score=139.02 Aligned_cols=193 Identities=23% Similarity=0.304 Sum_probs=154.2
Q ss_pred cccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccC
Q 012007 157 FKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYD 236 (473)
Q Consensus 157 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (473)
.+.+-..|.++.-+|...+-+||+.||.|++|....++.+...+.. ...
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-------------------------------g~s 2252 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-------------------------------GNS 2252 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-------------------------------Ccc
Confidence 3445567888888898899999999999999999988876666543 337
Q ss_pred CeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEE---eCCCcEEEEeCcccCCCcc
Q 012007 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTG---SADGTVKVWRRELQGKGTK 313 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~---~~dg~i~vwd~~~~~~~~~ 313 (473)
.|+.+.|+.+|+.+..+..||.+.+|.+. .++....+.|........|-. ..+++. +.++.+.+||..... .
T Consensus 2253 ~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~---~ 2327 (2439)
T KOG1064|consen 2253 RVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPP---M 2327 (2439)
T ss_pred hhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee-hhhhccccCCCCCcccchhcccCc---c
Confidence 88999999999999999999999999986 677777888998888888765 444544 347899999986432 1
Q ss_pred eeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEe
Q 012007 314 HCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWR 393 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd 393 (473)
... .-..|.+.++++++-|...+|++|+.+|.|++||++..... ..+. . +. ...++++|+..|.|+||+
T Consensus 2328 ~s~--v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~-h~~~-----~--~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2328 NSL--VHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLR-HTFQ-----A--LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred cce--eeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHH-HHhh-----h--hh-hhheeeccCcccceEEEE
Confidence 122 22789999999999999999999999999999999864332 1221 1 33 577999999999999999
Q ss_pred cCC
Q 012007 394 REE 396 (473)
Q Consensus 394 ~~~ 396 (473)
+..
T Consensus 2397 ~s~ 2399 (2439)
T KOG1064|consen 2397 LSE 2399 (2439)
T ss_pred ccc
Confidence 987
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.5e-11 Score=115.11 Aligned_cols=196 Identities=10% Similarity=0.030 Sum_probs=123.4
Q ss_pred ccCCeeEEEEcCCCCEEEEEeC---CCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEE-EEeCCC--cEEEEeCc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSW---DKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF-TGSADG--TVKVWRRE 306 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~---dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~-s~~~dg--~i~vwd~~ 306 (473)
+...+...+|+|||+.|+..+. +..|.+||+.+++.... ......+....|+|++ .|+ +.+.+| .|.+||+.
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~ 275 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 275 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 5567889999999998887642 35699999988754332 2223345568999998 444 445455 48888886
Q ss_pred ccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC-CCcEEEE--ecCCcccccceeecCcceEEEEEecCCEEEEE
Q 012007 307 LQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-DGLVNFW--ECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSG 383 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~ 383 (473)
.+. ...+..+...+....|+|+|+.|+..+. ++...|| |+.++........++.....+++++|++|+..
T Consensus 276 tg~-------~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~ 348 (429)
T PRK03629 276 SGQ-------IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMV 348 (429)
T ss_pred CCC-------EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence 322 1223334456788999999998876654 3444555 66544322111222233346788999998876
Q ss_pred eCC---CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCc---EEEEEcCCC
Q 012007 384 SAD---RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKS---VKVWRVSEH 455 (473)
Q Consensus 384 ~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~---v~iW~i~~~ 455 (473)
+.+ ..|.+||+.++. .. .+... .......|+||+. +|+.++.|+. +.+|++...
T Consensus 349 ~~~~g~~~I~~~dl~~g~-~~---~Lt~~-~~~~~p~~SpDG~-------------~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 349 SSNGGQQHIAKQDLATGG-VQ---VLTDT-FLDETPSIAPNGT-------------MVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred EccCCCceEEEEECCCCC-eE---EeCCC-CCCCCceECCCCC-------------EEEEEEcCCCceEEEEEECCCC
Confidence 543 358889988743 22 22221 2234678999998 6777777764 667777543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.6e-11 Score=117.49 Aligned_cols=179 Identities=11% Similarity=0.082 Sum_probs=116.6
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCC---CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EE-EEEeCCCcEEEEeCccc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWD---KTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LV-FTGSADGTVKVWRRELQ 308 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~d---g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l-~s~~~dg~i~vwd~~~~ 308 (473)
+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+|++ .| ++.+.+|...+|.++..
T Consensus 194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 272 (427)
T PRK02889 194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD 272 (427)
T ss_pred CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECC
Confidence 66778899999999999887643 359999998886543 33334556788999998 44 46778888888776532
Q ss_pred CCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC-CCCcEEEEec--CCcccccceeecCcceEEEEEecCCEEEEEeC
Q 012007 309 GKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS-SDGLVNFWEC--EKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSA 385 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~ 385 (473)
.. ....+..+........|+|||+.|+..+ .+|...||.+ ..+........+.......++++|++|+..+.
T Consensus 273 ~~-----~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 273 GS-----GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred CC-----CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEc
Confidence 21 1223333444566788999999877654 3466666654 33322111222222233578899999987775
Q ss_pred CC---cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 386 DR---NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 386 dg---~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
++ .|.+||+.++.. ..+... .......|+|+++
T Consensus 348 ~~g~~~I~v~d~~~g~~----~~lt~~-~~~~~p~~spdg~ 383 (427)
T PRK02889 348 VGGAFKLYVQDLATGQV----TALTDT-TRDESPSFAPNGR 383 (427)
T ss_pred cCCcEEEEEEECCCCCe----EEccCC-CCccCceECCCCC
Confidence 54 599999987432 222222 2346789999998
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.2e-11 Score=110.90 Aligned_cols=299 Identities=11% Similarity=0.072 Sum_probs=167.2
Q ss_pred cceeeeeeecc-cE-EEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEe-CCCeEEEE
Q 012007 114 GLIGSIVRKEG-HI-YSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGH-QDGKIRIW 188 (473)
Q Consensus 114 ~~~~~l~~h~~-~V-~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~vw 188 (473)
..+..+..... +. ..+++||+++++++.||.|.++|+. +.+..++.. .....+++++||++++++. .++.+.++
T Consensus 27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~ 105 (369)
T PF02239_consen 27 KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVI 105 (369)
T ss_dssp SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEE
T ss_pred eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEe
Confidence 34555554332 22 3467889999999999999999976 444555543 3468899999999998775 58999999
Q ss_pred eCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC-CCEEEEEcCCC
Q 012007 189 KVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD-KTLKVWRISDC 267 (473)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d-g~v~vwd~~~~ 267 (473)
|.++.+..........+.. .....+..|..++....++..-.| +.|.+.|....
T Consensus 106 D~~tle~v~~I~~~~~~~~-------------------------~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 106 DAETLEPVKTIPTGGMPVD-------------------------GPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp ETTT--EEEEEE--EE-TT-------------------------TS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred ccccccceeeccccccccc-------------------------ccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 9999877665543321110 023467788888888866666554 77888888765
Q ss_pred eee--EEeecCCCceeEEEEcCCC-E-EEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC--------
Q 012007 268 KCL--ESINAHDDAINSVVAGFDS-L-VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE-------- 335 (473)
Q Consensus 268 ~~~--~~~~~~~~~v~~l~~~~~~-~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-------- 335 (473)
+.+ ..+. .........|.+++ + +++...+..|-++|...... ......-...|..++..+ .+|.
T Consensus 161 ~~~~~~~i~-~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~--v~~i~~g~~p~~~~~~~~-php~~g~vw~~~ 236 (369)
T PF02239_consen 161 KNLKVTTIK-VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL--VALIDTGKKPHPGPGANF-PHPGFGPVWATS 236 (369)
T ss_dssp SCEEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE--EEEEE-SSSBEETTEEEE-EETTTEEEEEEE
T ss_pred cccceeeec-ccccccccccCcccceeeecccccceeEEEeeccceE--EEEeeccccccccccccc-cCCCcceEEeec
Confidence 433 2333 34566778899988 4 44556678999999864221 000001112233333332 2222
Q ss_pred --CCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEE----eCCCcEEEEecCCCCceeEEEEecCC
Q 012007 336 --SAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSG----SADRNICLWRREESGAHSCLAVLTGH 409 (473)
Q Consensus 336 --~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~~~h 409 (473)
+...++.-....+.+||....+....+......--...+|+++++++. ...+.|.++|.++ .+.+..+...
T Consensus 237 ~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~t---l~~~~~i~~~ 313 (369)
T PF02239_consen 237 GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT---LKVVKTITPG 313 (369)
T ss_dssp BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCG---TEEEE-HHHH
T ss_pred cccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcC---cceeEEEecc
Confidence 222212222234556777664444333332233334567899999998 4458999999998 4555555422
Q ss_pred -CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCC-cEEEEEcCCCCC
Q 012007 410 -TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDK-SVKVWRVSEHAP 457 (473)
Q Consensus 410 -~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg-~v~iW~i~~~~~ 457 (473)
...+..+.|++++.. +.+|.-.++ .|.|||..+.+.
T Consensus 314 ~~~~~~h~ef~~dG~~------------v~vS~~~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 314 PGKRVVHMEFNPDGKE------------VWVSVWDGNGAIVVYDAKTLKE 351 (369)
T ss_dssp HT--EEEEEE-TTSSE------------EEEEEE--TTEEEEEETTTTEE
T ss_pred CCCcEeccEECCCCCE------------EEEEEecCCCEEEEEECCCcEE
Confidence 235899999999984 444444444 899999887653
|
... |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.5e-11 Score=100.01 Aligned_cols=271 Identities=13% Similarity=0.141 Sum_probs=175.4
Q ss_pred CCcEEEeeCCcc----cccc-ccCcccEEEEEEeC---CCC-EEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEe
Q 012007 142 SKNIRVWKNLKE----FSGF-KSNSGLVKAIIISG---DSN-KIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVK 212 (473)
Q Consensus 142 dg~i~vwd~~~~----~~~~-~~h~~~V~~l~~s~---~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 212 (473)
.|.+.+|++... +..+ ......+..+.|.- +|. .|+-+..+|.|.++.............-.....
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki----- 119 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKI----- 119 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhh-----
Confidence 467778875421 1111 22345567777753 444 566677788898888765443332221100000
Q ss_pred ecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee--eEEeecCCCceeEEEEcCCC-
Q 012007 213 SSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC--LESINAHDDAINSVVAGFDS- 289 (473)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~--~~~~~~~~~~v~~l~~~~~~- 289 (473)
......++.|++.+..++++..+|.+.+-+...... ++.++.|+-..+...|+...
T Consensus 120 ---------------------~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~p 178 (339)
T KOG0280|consen 120 ---------------------SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEP 178 (339)
T ss_pred ---------------------hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCC
Confidence 111346788999999999999999999776655544 44889999999999887554
Q ss_pred -EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc-CCCEEEEeCCCCcEEEEecCCcccccceeecCc
Q 012007 290 -LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHK 367 (473)
Q Consensus 290 -~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 367 (473)
++++|+.|+.+..||++.. ..........|...|.+|.-+| ...++++|+.|-.|++||.++..++... ..-.
T Consensus 179 nlvytGgDD~~l~~~D~R~p----~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~-~~v~ 253 (339)
T KOG0280|consen 179 NLVYTGGDDGSLSCWDIRIP----KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK-AKVG 253 (339)
T ss_pred ceEEecCCCceEEEEEecCC----cceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc-Cccc
Confidence 8999999999999999832 2333444667889999998887 5789999999999999999864443221 1122
Q ss_pred ceEEEEEec----CCEEEEEeCCCcEEEEecCCCCc--eeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEe
Q 012007 368 MAVLCLAAA----GNLVFSGSADRNICLWRREESGA--HSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG 441 (473)
Q Consensus 368 ~~v~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~ 441 (473)
+.|..+... +.+|+++-..| .+|-+...... ...+.....|.+-+..-.|..... +|+|+
T Consensus 254 GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~-------------~lATC 319 (339)
T KOG0280|consen 254 GGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDS-------------FLATC 319 (339)
T ss_pred cceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccc-------------eeeee
Confidence 455555443 33455554444 67777665211 124555667777777777744433 78887
Q ss_pred e-CCCcEE-EEEcCCCCC
Q 012007 442 S-LDKSVK-VWRVSEHAP 457 (473)
Q Consensus 442 s-~Dg~v~-iW~i~~~~~ 457 (473)
+ .|+.++ +|-.-++++
T Consensus 320 sFYDk~~~~~Wl~~t~~~ 337 (339)
T KOG0280|consen 320 SFYDKKIRQLWLHITGEP 337 (339)
T ss_pred eccccceeeeeeeccCCc
Confidence 6 477755 887665543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.2e-11 Score=115.39 Aligned_cols=176 Identities=11% Similarity=0.053 Sum_probs=116.8
Q ss_pred ccCCeeEEEEcCCCCEEEEEeC---CCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-E-EEEEeCCCc--EEEEeCc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSW---DKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-L-VFTGSADGT--VKVWRRE 306 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~---dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~-l~s~~~dg~--i~vwd~~ 306 (473)
|...+.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+....|+|++ . +++.+.++. |.+||+.
T Consensus 200 ~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 278 (435)
T PRK05137 200 GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR 278 (435)
T ss_pred CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC
Confidence 6778999999999998888763 467999999887653 344456677788999998 4 456666666 6666765
Q ss_pred ccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC-CC--cEEEEecCCcccccceee-cCcceEEEEEecCCEEEE
Q 012007 307 LQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-DG--LVNFWECEKHLSHGGVLR-GHKMAVLCLAAAGNLVFS 382 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~l~s 382 (473)
.+. ...+..+........|+|||+.|+..+. +| .|++||+..+... .... ........++++|++|+.
T Consensus 279 ~~~-------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia~ 350 (435)
T PRK05137 279 SGT-------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIAF 350 (435)
T ss_pred CCc-------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEEE
Confidence 321 1233445555677899999998876653 33 5778887654322 2211 112223568899999887
Q ss_pred EeCC---CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 383 GSAD---RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 383 ~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
...+ ..|.+||+.++. . ..+. ....+....|+||++
T Consensus 351 ~~~~~~~~~i~~~d~~~~~-~---~~lt-~~~~~~~p~~spDG~ 389 (435)
T PRK05137 351 TKQGGGQFSIGVMKPDGSG-E---RILT-SGFLVEGPTWAPNGR 389 (435)
T ss_pred EEcCCCceEEEEEECCCCc-e---Eecc-CCCCCCCCeECCCCC
Confidence 6643 358888876532 1 2222 123467889999998
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.3e-11 Score=116.50 Aligned_cols=229 Identities=10% Similarity=-0.003 Sum_probs=142.5
Q ss_pred cEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCC---CeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcc
Q 012007 144 NIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQD---GKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKN 219 (473)
Q Consensus 144 ~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (473)
.|.++|.. .....+..+...+...+|+|||++|+.+..+ ..|++||+.++.......
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~------------------- 231 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS------------------- 231 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-------------------
Confidence 57777764 3345555667789999999999999987654 479999998775322111
Q ss_pred eEEEeecceeeEeeccCCeeEEEEcCCCCEEEE-EeCCC--CEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEe
Q 012007 220 YVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYS-GSWDK--TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGS 295 (473)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s-~s~dg--~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~ 295 (473)
+...+.+++|+|+++.|+. .+.++ .|++||+.+++.. .+..+........|++++ .|+..+
T Consensus 232 --------------~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s 296 (417)
T TIGR02800 232 --------------FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTS 296 (417)
T ss_pred --------------CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEE
Confidence 3445667899999987764 44444 5889999876543 333444445567889987 555444
Q ss_pred -CCC--cEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC---cEEEEecCCcccccceeecCcce
Q 012007 296 -ADG--TVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG---LVNFWECEKHLSHGGVLRGHKMA 369 (473)
Q Consensus 296 -~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~ 369 (473)
.++ .|.++|+.... ...+..+...+....|+|++++|+.+..++ .|.+||+.++... .........
T Consensus 297 ~~~g~~~iy~~d~~~~~-------~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~ 368 (417)
T TIGR02800 297 DRGGSPQIYMMDADGGE-------VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTGLDE 368 (417)
T ss_pred CCCCCceEEEEECCCCC-------EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCCCCC
Confidence 344 46666664221 122233445667889999999998887765 7888998764321 111111122
Q ss_pred EEEEEecCCEEEEEeCCC---cEEEEecCCCCceeEEEEecCCCCceeEEEE
Q 012007 370 VLCLAAAGNLVFSGSADR---NICLWRREESGAHSCLAVLTGHTGPVKCLAV 418 (473)
Q Consensus 370 v~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~ 418 (473)
-..++++|++|+..+.++ .+.+.+... .....+..+.+.+..++|
T Consensus 369 ~p~~spdg~~l~~~~~~~~~~~l~~~~~~g----~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 369 SPSFAPNGRMILYATTRGGRGVLGLVSTDG----RFRARLPLGNGDVREPAW 416 (417)
T ss_pred CceECCCCCEEEEEEeCCCcEEEEEEECCC----ceeeECCCCCCCcCCCCC
Confidence 346888999888777654 344555433 223334333444554444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.8e-10 Score=104.48 Aligned_cols=277 Identities=12% Similarity=0.204 Sum_probs=170.4
Q ss_pred EEEeeCC----CcEEEeeCC---cccccc--ccCcccEEEEEEeCCCCEEEEEeC----CCeEEEEeCCCC--CeeeEEe
Q 012007 136 LYTGSDS----KNIRVWKNL---KEFSGF--KSNSGLVKAIIISGDSNKIFTGHQ----DGKIRIWKVSRK--NASVHKR 200 (473)
Q Consensus 136 l~tg~~d----g~i~vwd~~---~~~~~~--~~h~~~V~~l~~s~~~~~l~s~~~----dg~i~vwd~~~~--~~~~~~~ 200 (473)
++.|+.. +.|.+|+.. ..+... ..-......|++++++++|++... +|.|..|++... .......
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4555555 678888652 111111 113345677899999999999877 468999988764 2222111
Q ss_pred eccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCC-CeeeEE---ee-
Q 012007 201 VGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISD-CKCLES---IN- 274 (473)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~-~~~~~~---~~- 274 (473)
.. ........++++|++++|+++. .+|.|.++++.. +..... +.
T Consensus 82 ~~------------------------------~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~ 131 (345)
T PF10282_consen 82 VP------------------------------SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRH 131 (345)
T ss_dssp EE------------------------------ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEES
T ss_pred ec------------------------------cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeeccc
Confidence 11 0234456799999999999987 489999999976 443322 21
Q ss_pred ---------cCCCceeEEEEcCCC-EEEE-EeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe-
Q 012007 275 ---------AHDDAINSVVAGFDS-LVFT-GSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG- 342 (473)
Q Consensus 275 ---------~~~~~v~~l~~~~~~-~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~- 342 (473)
.......++.++|++ ++++ .-....|.+|++......... ..............++|+|+++++++.
T Consensus 132 ~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~-~~~~~~~~G~GPRh~~f~pdg~~~Yv~~ 210 (345)
T PF10282_consen 132 EGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP-VDSIKVPPGSGPRHLAFSPDGKYAYVVN 210 (345)
T ss_dssp EEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE-EEEEECSTTSSEEEEEE-TTSSEEEEEE
T ss_pred CCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE-eeccccccCCCCcEEEEcCCcCEEEEec
Confidence 112456788999997 4444 344568999998643311111 112233455678999999999887665
Q ss_pred CCCCcEEEEecC--Cccc-cccee-------ecC-cceEEEEEecCCEEEEEe-CCCcEEEEecCC-CCceeEEEEecCC
Q 012007 343 SSDGLVNFWECE--KHLS-HGGVL-------RGH-KMAVLCLAAAGNLVFSGS-ADRNICLWRREE-SGAHSCLAVLTGH 409 (473)
Q Consensus 343 ~~dg~i~iwd~~--~~~~-~~~~~-------~~~-~~~v~~~~~~~~~l~s~~-~dg~i~iwd~~~-~~~~~~~~~~~~h 409 (473)
-.++.|.+|++. ++.. ..... .+. ...-..++++|++|+++. .++.|.+|+++. .+....+..+...
T Consensus 211 e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~ 290 (345)
T PF10282_consen 211 ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG 290 (345)
T ss_dssp TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES
T ss_pred CCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC
Confidence 457789999887 2211 10111 111 234467889999888776 467899999943 2334555555443
Q ss_pred CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 410 TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 410 ~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
......++++|+++. ++++.-.++.|.+|++...
T Consensus 291 G~~Pr~~~~s~~g~~------------l~Va~~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 291 GKFPRHFAFSPDGRY------------LYVANQDSNTVSVFDIDPD 324 (345)
T ss_dssp SSSEEEEEE-TTSSE------------EEEEETTTTEEEEEEEETT
T ss_pred CCCccEEEEeCCCCE------------EEEEecCCCeEEEEEEeCC
Confidence 445799999999982 4445557789999998643
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.7e-11 Score=105.44 Aligned_cols=260 Identities=15% Similarity=0.270 Sum_probs=168.8
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCee---eEEeecc-ccccceeEeecCCCcceEEEeecceeeEeeccC
Q 012007 161 SGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNAS---VHKRVGS-LPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYD 236 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (473)
..-|.+|.|...|.+|+||..+|.|.++.-+..... ....... .+.+ + .+..+.-..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEF-D------------------YLkSleieE 85 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEF-D------------------YLKSLEIEE 85 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCccc-c------------------hhhhhhhhh
Confidence 456899999999999999999999999976543321 0000000 0000 0 011112456
Q ss_pred CeeEEEEcCCC--CEEEEEeCCCCEEEEEcCCCee-----------------------------------eEEe-ecCCC
Q 012007 237 AVSCLSLNAEQ--GLLYSGSWDKTLKVWRISDCKC-----------------------------------LESI-NAHDD 278 (473)
Q Consensus 237 ~v~~l~~~~~~--~~l~s~s~dg~v~vwd~~~~~~-----------------------------------~~~~-~~~~~ 278 (473)
.|..+.|.+++ ..++..+.|.+|++|.+..... .+.+ .+|.-
T Consensus 86 KinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHty 165 (433)
T KOG1354|consen 86 KINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTY 165 (433)
T ss_pred hhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeecccccee
Confidence 78889998855 4667777899999998753210 0111 35777
Q ss_pred ceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeecc-----CCccEEEEEEccC-CCEEEEeCCCCcEEEEe
Q 012007 279 AINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLK-----HENAVTALAVNQE-SAVVYCGSSDGLVNFWE 352 (473)
Q Consensus 279 ~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-----~~~~v~~l~~~~~-~~~l~~~~~dg~i~iwd 352 (473)
-|++|.++.|...+....|=.|.+|+++.... ...++ ...+ -..-|++..|+|. .++++-.++.|.|++-|
T Consensus 166 hiNSIS~NsD~Et~lSADdLRINLWnlei~d~--sFnIV-DIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 166 HINSISVNSDKETFLSADDLRINLWNLEIIDQ--SFNIV-DIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred EeeeeeecCccceEeeccceeeeeccccccCC--ceeEE-EccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence 88999999898777778899999999875432 11111 1222 2345889999995 47777888899999999
Q ss_pred cCCccccc---ceee------------cCcceE--EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCC----
Q 012007 353 CEKHLSHG---GVLR------------GHKMAV--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTG---- 411 (473)
Q Consensus 353 ~~~~~~~~---~~~~------------~~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~---- 411 (473)
++...... ..+. +--..| ..++.+|+|+++-.. -+|++||++.. .+++.++.-|..
T Consensus 243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme--~~pv~t~~vh~~lr~k 319 (433)
T KOG1354|consen 243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNME--AKPVETYPVHEYLRSK 319 (433)
T ss_pred chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecccc--CCcceEEeehHhHHHH
Confidence 98421111 0110 001122 445667999998764 48999999643 344444444421
Q ss_pred --------ce---eEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 412 --------PV---KCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 412 --------~V---~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
.| ..++|+.++. +++||+....++++++..+...
T Consensus 320 Lc~lYEnD~IfdKFec~~sg~~~-------------~v~TGsy~n~frvf~~~~gsk~ 364 (433)
T KOG1354|consen 320 LCSLYENDAIFDKFECSWSGNDS-------------YVMTGSYNNVFRVFNLARGSKE 364 (433)
T ss_pred HHHHhhccchhheeEEEEcCCcc-------------eEecccccceEEEecCCCCcce
Confidence 22 4578888887 8999999999999997766543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.3e-11 Score=114.73 Aligned_cols=195 Identities=11% Similarity=0.042 Sum_probs=124.4
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCC---CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EE-EEEeCCC--cEEEEeCc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWD---KTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LV-FTGSADG--TVKVWRRE 306 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~d---g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l-~s~~~dg--~i~vwd~~ 306 (473)
+...+.+.+|+|+|+.|+..+.+ ..|++||+.+++... +....+...+..|+|++ .+ ++.+.+| .|.+||+.
T Consensus 202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~ 280 (433)
T PRK04922 202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG 280 (433)
T ss_pred CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECC
Confidence 66678899999999999887743 369999998876533 33334455678999998 44 4555665 58888886
Q ss_pred ccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC-CCCc--EEEEecCCcccccceeecCcceEEEEEecCCEEEEE
Q 012007 307 LQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS-SDGL--VNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSG 383 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~ 383 (473)
.+. ...+..+.......+|+|||+.|+..+ .+|. |.++|+.++........+......+++++|++|+..
T Consensus 281 ~g~-------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 281 SRQ-------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMV 353 (433)
T ss_pred CCC-------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence 432 122334444556789999999887665 3454 666676554322112223333346788999998876
Q ss_pred eCCC---cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeC-CC--cEEEEEcCC
Q 012007 384 SADR---NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSL-DK--SVKVWRVSE 454 (473)
Q Consensus 384 ~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~-Dg--~v~iW~i~~ 454 (473)
+.++ .|.+||+.++. .. .+. +........|+|+++ .|+..+. .+ .|.++++..
T Consensus 354 ~~~~~~~~I~v~d~~~g~---~~-~Lt-~~~~~~~p~~spdG~-------------~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 354 HGSGGQYRIAVMDLSTGS---VR-TLT-PGSLDESPSFAPNGS-------------MVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred ECCCCceeEEEEECCCCC---eE-ECC-CCCCCCCceECCCCC-------------EEEEEEecCCceEEEEEECCC
Confidence 5443 59999987732 22 222 222455679999998 4444443 33 466676644
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.4e-11 Score=113.50 Aligned_cols=264 Identities=13% Similarity=0.114 Sum_probs=181.1
Q ss_pred ccEEEEEec--CCEEEEeeCCCcEEEeeCCc--------c---------ccccccCcccEEEEEEeCCCCEEEEEeCCCe
Q 012007 124 GHIYSLAAS--GDLLYTGSDSKNIRVWKNLK--------E---------FSGFKSNSGLVKAIIISGDSNKIFTGHQDGK 184 (473)
Q Consensus 124 ~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~--------~---------~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~ 184 (473)
....|++|+ ..++|+||.||.++|-.+.. . -+++.+|++.|.-+.|+.+.+.|-|...+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 344577776 67999999999999985321 1 2357899999999999999999999999999
Q ss_pred EEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEc
Q 012007 185 IRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264 (473)
Q Consensus 185 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~ 264 (473)
|.||-+-.+........ ....+.|.+++|+.+|..++....||.|.+=.+
T Consensus 95 IiVWmlykgsW~EEMiN------------------------------nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMIN------------------------------NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred EEEEeeecccHHHHHhh------------------------------CcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence 99999876643211110 125677899999999999999999999988777
Q ss_pred CCCeee-EEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccC--CCcceeeee---eeccCCccEEEEEEc----
Q 012007 265 SDCKCL-ESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG--KGTKHCLAQ---VLLKHENAVTALAVN---- 333 (473)
Q Consensus 265 ~~~~~~-~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~---~~~~~~~~v~~l~~~---- 333 (473)
...+.- ..++ ......+.|++|. .++.+-.+|.+++||....- +....+.+. .+......|..+.|.
T Consensus 145 dGNRIwgKeLk--g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~ 222 (1189)
T KOG2041|consen 145 DGNRIWGKELK--GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY 222 (1189)
T ss_pred ccceecchhcc--hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc
Confidence 543321 1222 2234467899887 66677788999999864210 001111111 111222335556663
Q ss_pred ----cCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCC---------CcEEEEecCCCCce
Q 012007 334 ----QESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSAD---------RNICLWRREESGAH 400 (473)
Q Consensus 334 ----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~ 400 (473)
|+...|+++..+|.+.|..-.+...+...-.+....-..+.++|..|++++.| +.|++|..-.
T Consensus 223 ~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G---- 298 (1189)
T KOG2041|consen 223 QPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG---- 298 (1189)
T ss_pred ccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEeccch----
Confidence 47789999999999999876665555444444333335567779999998865 2566665443
Q ss_pred eEEEEecCCCCceeEEEEecCCC
Q 012007 401 SCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 401 ~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
..+..++-....|++++|...+-
T Consensus 299 ~i~gtlkvpg~~It~lsWEg~gL 321 (1189)
T KOG2041|consen 299 HIVGTLKVPGSCITGLSWEGTGL 321 (1189)
T ss_pred hheEEEecCCceeeeeEEcCCce
Confidence 55666666677899999987664
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-10 Score=113.30 Aligned_cols=232 Identities=9% Similarity=0.004 Sum_probs=141.3
Q ss_pred cEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCC---CeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcc
Q 012007 144 NIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQD---GKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKN 219 (473)
Q Consensus 144 ~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (473)
.|.++|.. .....+..+...+....|+|||++|+..+.+ ..|.+|++.+++......
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~------------------- 240 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN------------------- 240 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-------------------
Confidence 36666754 3344555677789999999999999876644 368999998775422111
Q ss_pred eEEEeecceeeEeeccCCeeEEEEcCCCCEEEE-EeCCC--CEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEE-EE
Q 012007 220 YVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYS-GSWDK--TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF-TG 294 (473)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s-~s~dg--~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~-s~ 294 (473)
....+....|+|+|+.|+. ...++ .|++||+.+++.. .+..+........|+|++ .++ +.
T Consensus 241 --------------~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s 305 (430)
T PRK00178 241 --------------FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTS 305 (430)
T ss_pred --------------CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEE
Confidence 2233446889999998874 44455 5888899877643 344455556677899997 444 44
Q ss_pred eCCCc--EEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC-C--cEEEEecCCcccccceeecCcce
Q 012007 295 SADGT--VKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD-G--LVNFWECEKHLSHGGVLRGHKMA 369 (473)
Q Consensus 295 ~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~ 369 (473)
..+|. |.++|+..+. ...+ ... ........|+|+++.|+....+ + .|.+||+.++.... ........
T Consensus 306 ~~~g~~~iy~~d~~~g~---~~~l--t~~--~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~~~~ 377 (430)
T PRK00178 306 DRGGKPQIYKVNVNGGR---AERV--TFV--GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDTSLDE 377 (430)
T ss_pred CCCCCceEEEEECCCCC---EEEe--ecC--CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCCCCCC
Confidence 44444 5556654321 1111 111 1223457899999998876543 3 47888987653321 11111222
Q ss_pred EEEEEecCCEEEEEeCC-C--cEEEEecCCCCceeEEEEecCCCCceeEEEEecC
Q 012007 370 VLCLAAAGNLVFSGSAD-R--NICLWRREESGAHSCLAVLTGHTGPVKCLAVEED 421 (473)
Q Consensus 370 v~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 421 (473)
-..++++|++++..+.+ + .|.++++.. .....+..+.+.+...+|+|-
T Consensus 378 ~p~~spdg~~i~~~~~~~g~~~l~~~~~~g----~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 378 SPSVAPNGTMLIYATRQQGRGVLMLVSING----RVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CceECCCCCEEEEEEecCCceEEEEEECCC----CceEECcCCCCCcCCCccCCC
Confidence 34788999988776644 3 466666654 222334445566777788773
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.9e-11 Score=102.34 Aligned_cols=147 Identities=12% Similarity=0.179 Sum_probs=101.8
Q ss_pred EEEEcCCCCEEEEEeC----------CCCEEEEEcC-CCeeeEEeec-CCCceeEEEEcCCC-EE--EEEeCCCcEEEEe
Q 012007 240 CLSLNAEQGLLYSGSW----------DKTLKVWRIS-DCKCLESINA-HDDAINSVVAGFDS-LV--FTGSADGTVKVWR 304 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~----------dg~v~vwd~~-~~~~~~~~~~-~~~~v~~l~~~~~~-~l--~s~~~dg~i~vwd 304 (473)
.+.|+++|++|+.-.. -+...+|.++ ....+..+.. ..++|.+++|+|++ .+ +.|..++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 5779999987766543 1235555552 2234444443 34579999999998 43 3455678999999
Q ss_pred CcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC---CCcEEEEecCCcccccceeecCcceEEEEEecCCEEE
Q 012007 305 RELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS---DGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVF 381 (473)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 381 (473)
++. .....+ +...+..+.|+|+|++|++++. .|.|.+||.++.... ...........+++|+|++|+
T Consensus 90 ~~~-------~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i-~~~~~~~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 90 VKG-------KKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKI-STFEHSDATDVEWSPDGRYLA 159 (194)
T ss_pred Ccc-------cEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEe-eccccCcEEEEEEcCCCCEEE
Confidence 851 111222 3567789999999999999864 467999999965444 333334455678889999999
Q ss_pred EEeC------CCcEEEEecCC
Q 012007 382 SGSA------DRNICLWRREE 396 (473)
Q Consensus 382 s~~~------dg~i~iwd~~~ 396 (473)
++.. |+.++||+...
T Consensus 160 ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEEeccceeccccEEEEEecC
Confidence 9874 78899999875
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.5e-11 Score=117.59 Aligned_cols=143 Identities=23% Similarity=0.322 Sum_probs=119.3
Q ss_pred ecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccc
Q 012007 131 ASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFK 208 (473)
Q Consensus 131 ~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 208 (473)
++.-++++|+.-+.|.+|+.. +.-..+.+|.+.|..+.|+.||+++++++.|.++|+|++++.+...
T Consensus 143 ~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~----------- 211 (967)
T KOG0974|consen 143 AEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG----------- 211 (967)
T ss_pred CcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-----------
Confidence 344589999999999999854 2222588999999999999999999999999999999999887543
Q ss_pred eeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCC-CceeEEEEcC
Q 012007 209 DYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHD-DAINSVVAGF 287 (473)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~-~~v~~l~~~~ 287 (473)
...++|...|..++|.|+ ++++++.|-+.++|+. ++..+..+..|. ..+..++..+
T Consensus 212 --------------------~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~ 268 (967)
T KOG0974|consen 212 --------------------CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPI 268 (967)
T ss_pred --------------------cccccccceeEEEEeccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcC
Confidence 122369999999999997 9999999999999976 455555777664 5788888888
Q ss_pred CC-EEEEEeCCCcEEEEeCcc
Q 012007 288 DS-LVFTGSADGTVKVWRREL 307 (473)
Q Consensus 288 ~~-~l~s~~~dg~i~vwd~~~ 307 (473)
+. .+++++.|+.+++|++..
T Consensus 269 ~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 269 GVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred CceEEEeeccCcchhhhhhhc
Confidence 77 888999999999999864
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.7e-11 Score=102.46 Aligned_cols=113 Identities=11% Similarity=0.232 Sum_probs=84.0
Q ss_pred CCccEEEEEEccCCCEEEE--eCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCC---CcEEEEecCCC
Q 012007 323 HENAVTALAVNQESAVVYC--GSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSAD---RNICLWRREES 397 (473)
Q Consensus 323 ~~~~v~~l~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d---g~i~iwd~~~~ 397 (473)
..++|.+++|+|+++.+++ |..++.|.+||++. ... ..+.........++|+|++|++|+.+ |.|.+||+++
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~-~~i-~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~- 134 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG-KKI-FSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK- 134 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc-cEe-EeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-
Confidence 4457999999999988654 45678999999973 222 23333444456788999999998754 6699999997
Q ss_pred CceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEee------CCCcEEEEEcCCC
Q 012007 398 GAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS------LDKSVKVWRVSEH 455 (473)
Q Consensus 398 ~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s------~Dg~v~iW~i~~~ 455 (473)
.+.+.... | ..++.++|+|+++ +|+++. .|..++||++...
T Consensus 135 --~~~i~~~~-~-~~~t~~~WsPdGr-------------~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 135 --KKKISTFE-H-SDATDVEWSPDGR-------------YLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred --CEEeeccc-c-CcEEEEEEcCCCC-------------EEEEEEeccceeccccEEEEEecCe
Confidence 56666554 3 3478999999999 677665 3889999999644
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6e-11 Score=103.33 Aligned_cols=248 Identities=19% Similarity=0.280 Sum_probs=178.8
Q ss_pred ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCC-CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEe
Q 012007 154 FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRK-NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKI 232 (473)
Q Consensus 154 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (473)
+..++||...|++...-|-..-+++.+.|.++|||--.+. +.-.... .
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-------------------------------~ 65 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-------------------------------H 65 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhh-------------------------------h
Confidence 4567889999999888888888999999999999954322 2111110 0
Q ss_pred eccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC----CCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcc
Q 012007 233 RHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS----DCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRREL 307 (473)
Q Consensus 233 ~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~----~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~ 307 (473)
....+++++.+.++...|++|-..|++.-+.+. ....++....|...+..+.++... ++++.+.|..+.---.+.
T Consensus 66 ~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~ 145 (404)
T KOG1409|consen 66 YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTES 145 (404)
T ss_pred hCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeecc
Confidence 145678999999999999999999999988764 344556667899999999987654 888888888775433332
Q ss_pred cCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC-CcccccceeecCcceEEEEEec--CCEEEEEe
Q 012007 308 QGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE-KHLSHGGVLRGHKMAVLCLAAA--GNLVFSGS 384 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~ 384 (473)
+......... ...+++.+.-. +.+.|...|.|.+-.+. +...+...+.+|...+.+++++ ...|++|.
T Consensus 146 ~~~lg~Y~~~-------~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~ 216 (404)
T KOG1409|consen 146 GNRLGGYNFE-------TPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGA 216 (404)
T ss_pred CCcccceEee-------ccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEecc
Confidence 2211111110 11111222111 56667777777776654 2344556788999999999988 66899999
Q ss_pred CCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 385 ADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 385 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
.|..|.+||+-.. ......+.+|...|..+...+.-. .+++++.||.|.+|+++...
T Consensus 217 ~d~~vi~wdigg~--~g~~~el~gh~~kV~~l~~~~~t~-------------~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 217 SDHSVIMWDIGGR--KGTAYELQGHNDKVQALSYAQHTR-------------QLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred ccCceEEEeccCC--cceeeeeccchhhhhhhhhhhhhe-------------eeeeccCCCeEEEEecccee
Confidence 9999999999763 334566789999999999888877 79999999999999998643
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-10 Score=111.78 Aligned_cols=232 Identities=11% Similarity=0.004 Sum_probs=137.7
Q ss_pred cEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCC-C--eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcc
Q 012007 144 NIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQD-G--KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKN 219 (473)
Q Consensus 144 ~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d-g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (473)
.|.++|.. .....+..+...+....|+|||++|+..+.+ + .|.+||+.+++......
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~------------------- 259 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS------------------- 259 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC-------------------
Confidence 45555643 2234455567788999999999998876543 2 58888988765322111
Q ss_pred eEEEeecceeeEeeccCCeeEEEEcCCCCEEEE-EeCCCC--EEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EE-EEE
Q 012007 220 YVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYS-GSWDKT--LKVWRISDCKCLESINAHDDAINSVVAGFDS-LV-FTG 294 (473)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s-~s~dg~--v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l-~s~ 294 (473)
.........|+|||+.|+. .+.++. |+++|+.+++. ..+..+........|+|++ .+ ++.
T Consensus 260 --------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s 324 (448)
T PRK04792 260 --------------FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTS 324 (448)
T ss_pred --------------CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEE
Confidence 1122346789999997765 556665 77888877654 3344455566778899998 44 444
Q ss_pred eCCCcEEEE--eCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC-CC--cEEEEecCCcccccceeecCcce
Q 012007 295 SADGTVKVW--RRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-DG--LVNFWECEKHLSHGGVLRGHKMA 369 (473)
Q Consensus 295 ~~dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~ 369 (473)
..++...+| |+..+. .. .... ........+|+|+|++|+..+. ++ .|.++|+.++... .........
T Consensus 325 ~~~g~~~Iy~~dl~~g~---~~--~Lt~--~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~~d~ 396 (448)
T PRK04792 325 ERGGKPQIYRVNLASGK---VS--RLTF--EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTRLDE 396 (448)
T ss_pred CCCCCceEEEEECCCCC---EE--EEec--CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCCCCC
Confidence 445554454 554221 11 1111 1222345789999998877654 34 3555677654321 111111122
Q ss_pred EEEEEecCCEEEEEeCC-Cc--EEEEecCCCCceeEEEEecCCCCceeEEEEecC
Q 012007 370 VLCLAAAGNLVFSGSAD-RN--ICLWRREESGAHSCLAVLTGHTGPVKCLAVEED 421 (473)
Q Consensus 370 v~~~~~~~~~l~s~~~d-g~--i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 421 (473)
-..++++|++|+....+ +. +.+++... .....+..+.+.+...+|+|-
T Consensus 397 ~ps~spdG~~I~~~~~~~g~~~l~~~~~~G----~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 397 SPSVAPNGTMVIYSTTYQGKQVLAAVSIDG----RFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CceECCCCCEEEEEEecCCceEEEEEECCC----CceEECcCCCCCcCCCccCCC
Confidence 24688999887765543 33 66667643 334445555666778888873
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.8e-09 Score=95.89 Aligned_cols=269 Identities=9% Similarity=0.043 Sum_probs=164.5
Q ss_pred CcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeC----------CCeEEEEeCCCCCeeeEEeecccccccee
Q 012007 143 KNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQ----------DGKIRIWKVSRKNASVHKRVGSLPTFKDY 210 (473)
Q Consensus 143 g~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 210 (473)
+.|.|.|.. +.+..+..-..+ ..+ ++||++.|+.+.. +..|.+||..+.+......+...|...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~-- 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL-- 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh--
Confidence 788888854 223333322222 124 9999999888776 679999999999877666654322110
Q ss_pred EeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-C-CCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC
Q 012007 211 VKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-W-DKTLKVWRISDCKCLESINAHDDAINSVVAGFD 288 (473)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~-dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~ 288 (473)
....-..++++|||++|++.. . +..|.+.|+.+++.+.++.... ...-... .+
T Consensus 103 -----------------------~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t-~e 157 (352)
T TIGR02658 103 -----------------------VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPT-AN 157 (352)
T ss_pred -----------------------ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEe-cC
Confidence 122334688999999999887 3 6889999999999999887533 2222222 22
Q ss_pred CEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEE-EEEcc-CCCEEEEeCCCCcEEEEecCCcc----cccce
Q 012007 289 SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTA-LAVNQ-ESAVVYCGSSDGLVNFWECEKHL----SHGGV 362 (473)
Q Consensus 289 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~-l~~~~-~~~~l~~~~~dg~i~iwd~~~~~----~~~~~ 362 (473)
....+-+.||......+...++.. ......+......+.. -.|.+ +++++++... |.|.+.|+.... .....
T Consensus 158 ~~~~~~~~Dg~~~~v~~d~~g~~~-~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~ 235 (352)
T TIGR02658 158 DTFFMHCRDGSLAKVGYGTKGNPK-IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEA 235 (352)
T ss_pred CccEEEeecCceEEEEecCCCceE-EeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeee
Confidence 333344567776666555433211 1111111110111000 04455 8888887776 999999964321 11111
Q ss_pred e---------ecCcceEEEEEecCCEEEEEe----------CCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 363 L---------RGHKMAVLCLAAAGNLVFSGS----------ADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 363 ~---------~~~~~~v~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
+ ........+++++++.+++.. ..+.|.++|..+ .+.+..+.- ...+..|+++||++
T Consensus 236 ~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t---~kvi~~i~v-G~~~~~iavS~Dgk 311 (352)
T TIGR02658 236 FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT---GKRLRKIEL-GHEIDSINVSQDAK 311 (352)
T ss_pred ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC---CeEEEEEeC-CCceeeEEECCCCC
Confidence 1 111122377888888887743 124799999988 556665543 34789999999987
Q ss_pred CCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 424 HDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 424 ~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
. .++++...++.|.+.|+.+++.
T Consensus 312 p-----------~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 312 P-----------LLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred e-----------EEEEeCCCCCcEEEEECcCCeE
Confidence 2 1455665789999999988754
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-10 Score=99.88 Aligned_cols=272 Identities=18% Similarity=0.289 Sum_probs=171.2
Q ss_pred cccEEEEEec--CCEEEEeeCCCcEEEeeCC-------ccccccccCc------------ccEEEEEEeCCC--CEEEEE
Q 012007 123 EGHIYSLAAS--GDLLYTGSDSKNIRVWKNL-------KEFSGFKSNS------------GLVKAIIISGDS--NKIFTG 179 (473)
Q Consensus 123 ~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~-------~~~~~~~~h~------------~~V~~l~~s~~~--~~l~s~ 179 (473)
...|+++.++ |.||++|...|.|.+|.-. +-+..+++|. ..|..|.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4568888887 8899999999999999632 2234455653 468889997665 345566
Q ss_pred eCCCeEEEEeCCCCCeeeEEee-----------ccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCC
Q 012007 180 HQDGKIRIWKVSRKNASVHKRV-----------GSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQG 248 (473)
Q Consensus 180 ~~dg~i~vwd~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 248 (473)
+.|.+|++|.+........... +.+.....+.....+....+.......+....|.-.|.++.|+.|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 7899999999876643221110 00001111111111222222222223333345888899999999988
Q ss_pred EEEEEeCCCCEEEEEcCCCe---eeEEeecCC-----CceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCc--ceee
Q 012007 249 LLYSGSWDKTLKVWRISDCK---CLESINAHD-----DAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGT--KHCL 316 (473)
Q Consensus 249 ~l~s~s~dg~v~vwd~~~~~---~~~~~~~~~-----~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~--~~~~ 316 (473)
.++++. |-.|.+|+++-.. .+..++.|. ..|++..|+|.. .+.-.+..|.|++-|++...... ....
T Consensus 186 t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 888776 6789999986422 233334443 357778888875 67777889999999998321100 0000
Q ss_pred --------eeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCc------------ceE-----E
Q 012007 317 --------AQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHK------------MAV-----L 371 (473)
Q Consensus 317 --------~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------------~~v-----~ 371 (473)
...+.+-...|..+.|+++|+++++-.. -+|+|||.+....+.....-|. ..| .
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFei 343 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEI 343 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEE
Confidence 1112233456888999999999987654 5899999987665555443332 122 3
Q ss_pred EEEecCCEEEEEeCCCcEEEEecCC
Q 012007 372 CLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 372 ~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
.++-+...+++|+..+..-+|-..+
T Consensus 344 sfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 344 SFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred EecCCcccccccccccceeeecccc
Confidence 3445677899999888888887554
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-09 Score=99.86 Aligned_cols=303 Identities=10% Similarity=0.157 Sum_probs=179.3
Q ss_pred cEEEEEecCCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEE-----eCC-----CeEEEEeCCCCC
Q 012007 125 HIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTG-----HQD-----GKIRIWKVSRKN 194 (473)
Q Consensus 125 ~V~~~~~~g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-----~~d-----g~i~vwd~~~~~ 194 (473)
.|.+.+.+|+++|.+.. ..++|++.......+......+.++.|+|-|++|.+= ..+ -.+.+|+++++.
T Consensus 38 ~v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~ 116 (566)
T KOG2315|consen 38 NVFAYSNNGRLFAYSDN-QVVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGV 116 (566)
T ss_pred eeEEEcCCCcEEEEEcC-CeEEEEEccCCcEEEEeccceeeeeeecccccccccccccccccCCCCCCCceeeeeeccce
Confidence 35577778888887764 6899998654322222222379999999999998762 122 247799998843
Q ss_pred eeeEEeeccc----ccc---ceeEee-cCCCcceEEEeecceeeEeeccCCeeEEEEcCCCC--EEEE-----EeCCCCE
Q 012007 195 ASVHKRVGSL----PTF---KDYVKS-SVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQG--LLYS-----GSWDKTL 259 (473)
Q Consensus 195 ~~~~~~~~~~----~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~--~l~s-----~s~dg~v 259 (473)
.......... +.+ +.+... ..+...+.+..........-|...|+.+.++|.+. .+++ .+.-+.|
T Consensus 117 ~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~v 196 (566)
T KOG2315|consen 117 QRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASV 196 (566)
T ss_pred ehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEE
Confidence 3222221111 111 001110 11111222222222222223778899999999632 3333 2445679
Q ss_pred EEEEcCCCeeeEEe---ecCCCceeEEEEcCCC--EEEE--EeCC---------CcEEEEeCcccCCCcceeeeeeeccC
Q 012007 260 KVWRISDCKCLESI---NAHDDAINSVVAGFDS--LVFT--GSAD---------GTVKVWRRELQGKGTKHCLAQVLLKH 323 (473)
Q Consensus 260 ~vwd~~~~~~~~~~---~~~~~~v~~l~~~~~~--~l~s--~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~ 323 (473)
+||.+.....-..+ .-....-..+.|.+.+ +|+. ..-| .++++.++. + .........
T Consensus 197 ri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~--g-----~s~~V~L~k 269 (566)
T KOG2315|consen 197 RIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ--G-----ESVSVPLLK 269 (566)
T ss_pred EEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec--C-----ceEEEecCC
Confidence 99987632211111 0111222345676665 3332 2223 356666664 1 112233345
Q ss_pred CccEEEEEEccCCCEEEE--eCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCC---CcEEEEecCCCC
Q 012007 324 ENAVTALAVNQESAVVYC--GSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSAD---RNICLWRREESG 398 (473)
Q Consensus 324 ~~~v~~l~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d---g~i~iwd~~~~~ 398 (473)
.++|.++.|+++++.+++ |-.-..+.|||++.... ..+....-...-+++.|++|+.++-+ |.|-|||+.+
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v--~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-- 345 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV--FDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-- 345 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe--EeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccc--
Confidence 789999999999966544 56678899999986322 23333333445677889999988865 7899999998
Q ss_pred ceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEee------CCCcEEEEEcCCC
Q 012007 399 AHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS------LDKSVKVWRVSEH 455 (473)
Q Consensus 399 ~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s------~Dg~v~iW~i~~~ 455 (473)
.+++..+..-. -+-+.|+|||+ +|+|+. .|+.++||++...
T Consensus 346 -~K~i~~~~a~~--tt~~eW~PdGe-------------~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 346 -RKLIAKFKAAN--TTVFEWSPDGE-------------YFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred -hhhccccccCC--ceEEEEcCCCc-------------EEEEEeccccEEecCCeEEEEecCc
Confidence 67777776543 46689999999 565555 4788999998754
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-11 Score=116.68 Aligned_cols=253 Identities=16% Similarity=0.237 Sum_probs=180.8
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccC--Ce
Q 012007 161 SGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYD--AV 238 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v 238 (473)
.+.+.++.++|.|+-+|.++.-| +.+-|+...-...... .|.. .|
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l--------------------------------~h~tpw~v 70 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWL--------------------------------HHITPWQV 70 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceee--------------------------------eccCcchh
Confidence 45678888999999999888876 5566766543222111 1322 35
Q ss_pred eEEEEcCC--CCEEEEEeCCCCEEEEEcCC---CeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCC
Q 012007 239 SCLSLNAE--QGLLYSGSWDKTLKVWRISD---CKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 239 ~~l~~~~~--~~~l~s~s~dg~v~vwd~~~---~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
-...|++. ..+-++......-.+|++.. ......+.+|...|+.+.|.+.. .+++++.|-.+..||++
T Consensus 71 ad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~r----- 145 (1081)
T KOG0309|consen 71 ADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMR----- 145 (1081)
T ss_pred cceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeecc-----
Confidence 55667763 33444444455667898853 23344566899999999999886 89999999999999998
Q ss_pred cceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEec---CCEEEEEeCCCc
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA---GNLVFSGSADRN 388 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~ 388 (473)
....+......-......++|+-....+.+.+....|.+||++.+..+...+++|...+..+.++ -..+.+++.|++
T Consensus 146 Sp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t 225 (1081)
T KOG0309|consen 146 SPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT 225 (1081)
T ss_pred CCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc
Confidence 34444555555566778899987555555667778899999999888888888988888888776 457889999999
Q ss_pred EEEEecCCCC----------------------------------------------------ceeEEEEecCCCCceeEE
Q 012007 389 ICLWRREESG----------------------------------------------------AHSCLAVLTGHTGPVKCL 416 (473)
Q Consensus 389 i~iwd~~~~~----------------------------------------------------~~~~~~~~~~h~~~V~~l 416 (473)
|++||..... ...++..+.||...|...
T Consensus 226 vkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eF 305 (1081)
T KOG0309|consen 226 VKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEF 305 (1081)
T ss_pred eeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHH
Confidence 9999976320 123456777888888777
Q ss_pred EEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 417 AVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
.|-..+.... ..+.+++.|+|-+.|.++++|-+.+
T Consensus 306 lWR~r~e~~~---d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 306 LWRKRKECDG---DYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred hhhhcccccC---CCCccceeEEEeecCCceEeeeccH
Confidence 7765543110 1245667999999999999999975
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-09 Score=97.89 Aligned_cols=301 Identities=13% Similarity=0.120 Sum_probs=186.1
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCC---------------eEEEEeCCC
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG---------------KIRIWKVSR 192 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg---------------~i~vwd~~~ 192 (473)
++++.|.+|++.... .|.+|.....-.....-...|..+.|+|.++||.+=...+ .+.+||+.+
T Consensus 39 ~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~s 117 (561)
T COG5354 39 SESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIAS 117 (561)
T ss_pred eecCcchheehhhcc-ceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccC
Confidence 567778999888775 5889975422222222345699999999999999865543 489999999
Q ss_pred CCeeeEEeeccccccce-eEeecCCCcceEEEeecc--------eeeE--e--eccCCeeEEEEcCCC--CEEEE-----
Q 012007 193 KNASVHKRVGSLPTFKD-YVKSSVNPKNYVEVRRNR--------SVLK--I--RHYDAVSCLSLNAEQ--GLLYS----- 252 (473)
Q Consensus 193 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~--~--~~~~~v~~l~~~~~~--~~l~s----- 252 (473)
+.....+.....+...- ++....++.....+.... .... + -....|....|+|.+ ..|+.
T Consensus 118 g~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk 197 (561)
T COG5354 118 GMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEK 197 (561)
T ss_pred ceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEcccc
Confidence 98877776655552221 222222222111111100 0000 0 012457788888853 33333
Q ss_pred EeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-E-EE---EEe-------CCCcEEEEeCcccCCCcceeeeeee
Q 012007 253 GSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-L-VF---TGS-------ADGTVKVWRRELQGKGTKHCLAQVL 320 (473)
Q Consensus 253 ~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~-l~---s~~-------~dg~i~vwd~~~~~~~~~~~~~~~~ 320 (473)
.+.++.+++|.+..+..+.+.......-..+.|.+.+ + ++ +-. ....+.+++++.. . ....
T Consensus 198 ~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-----~--i~V~ 270 (561)
T COG5354 198 LNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-----S--IPVE 270 (561)
T ss_pred CCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc-----c--ccee
Confidence 3567889999998766655443333333456676666 1 11 111 1345777777521 1 1112
Q ss_pred ccCCccEEEEEEccCCCEEEE--eCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCC---CcEEEEecC
Q 012007 321 LKHENAVTALAVNQESAVVYC--GSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSAD---RNICLWRRE 395 (473)
Q Consensus 321 ~~~~~~v~~l~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d---g~i~iwd~~ 395 (473)
....++|...+|.|.++.+++ |-.+..+.++|++.. +..........-..+++.+++++.++-| |.|-+||..
T Consensus 271 ~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~ 348 (561)
T COG5354 271 KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPA 348 (561)
T ss_pred ccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCccccceEEeccC
Confidence 255789999999998766544 457889999999875 2233334444556678899999998866 679999987
Q ss_pred CCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEee------CCCcEEEEEcCCC
Q 012007 396 ESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS------LDKSVKVWRVSEH 455 (473)
Q Consensus 396 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s------~Dg~v~iW~i~~~ 455 (473)
+. ..++..+.+-. ..-+.|+|+++ ++.+.. .|..|+||++...
T Consensus 349 ~r--f~~~~~~~~~n--~s~~~wspd~q-------------F~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 349 GR--FKVAGAFNGLN--TSYCDWSPDGQ-------------FYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred Cc--eEEEEEeecCC--ceEeeccCCce-------------EEEecCCCcccccCcceEEEEecCc
Confidence 63 45555665543 35578999998 443332 4789999999754
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.4e-08 Score=86.82 Aligned_cols=273 Identities=9% Similarity=0.163 Sum_probs=176.7
Q ss_pred CCcEEEeeCCcc-----ccccccCcccEEEEEEeCCCCEEEEEeCC---CeEEEEeCCCC--CeeeEEeeccccccceeE
Q 012007 142 SKNIRVWKNLKE-----FSGFKSNSGLVKAIIISGDSNKIFTGHQD---GKIRIWKVSRK--NASVHKRVGSLPTFKDYV 211 (473)
Q Consensus 142 dg~i~vwd~~~~-----~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~i~vwd~~~~--~~~~~~~~~~~~~~~~~~ 211 (473)
++-|++|++... ....-.+.+.++-|+|++++++|.++..+ |.|-.|.++.. ..........
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~-------- 86 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL-------- 86 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc--------
Confidence 467999986522 22234467889999999999999998765 67777777653 3222221110
Q ss_pred eecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC-CCCEEEEEcCC-CeeeE--EeecCCCc--------
Q 012007 212 KSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISD-CKCLE--SINAHDDA-------- 279 (473)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg~v~vwd~~~-~~~~~--~~~~~~~~-------- 279 (473)
...+-+.+++++++++|+++.. .|.|.++-+.. |.... .+..|.+.
T Consensus 87 ----------------------~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~ 144 (346)
T COG2706 87 ----------------------PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQES 144 (346)
T ss_pred ----------------------CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccC
Confidence 2233378999999999999874 47899998865 43322 22234444
Q ss_pred --eeEEEEcCCC-EEEEEeC-CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC-CCcEEEEecC
Q 012007 280 --INSVVAGFDS-LVFTGSA-DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-DGLVNFWECE 354 (473)
Q Consensus 280 --v~~l~~~~~~-~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~iwd~~ 354 (473)
+....+.|++ +|++..- -..|.+|++..+.. ...... .......-..|.|+|++++.++.++ +++|.+|...
T Consensus 145 ~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L-~~~~~~--~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~ 221 (346)
T COG2706 145 PHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKL-TPADPA--EVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYN 221 (346)
T ss_pred CccceeeeCCCCCEEEEeecCCceEEEEEcccCcc-cccccc--ccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEc
Confidence 7778889998 5554433 35789999983322 222111 1244566789999999999877654 8899999887
Q ss_pred Cccccccee-----------ecCcceEEEEEecCCEEEEEeC-CCcEEEEecCCC-CceeEEEEecCCCCceeEEEEecC
Q 012007 355 KHLSHGGVL-----------RGHKMAVLCLAAAGNLVFSGSA-DRNICLWRREES-GAHSCLAVLTGHTGPVKCLAVEED 421 (473)
Q Consensus 355 ~~~~~~~~~-----------~~~~~~v~~~~~~~~~l~s~~~-dg~i~iwd~~~~-~~~~~~~~~~~h~~~V~~l~~~~~ 421 (473)
........+ .........+++||++|.++.. ...|.+|.+... +....+.....+...-..+.|++.
T Consensus 222 ~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~ 301 (346)
T COG2706 222 PAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPS 301 (346)
T ss_pred CCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCC
Confidence 631111111 1223445678899999999853 347888888753 223444444445555788999999
Q ss_pred CCCCcccccCCCccEEEEEeeC-CCcEEEEEcCCCCCCcc
Q 012007 422 RDHDHEYHQKGDQRWTVYSGSL-DKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~s~s~-Dg~v~iW~i~~~~~~~~ 460 (473)
+. +|+.+.. +..|.++.+....-.+.
T Consensus 302 g~-------------~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 302 GR-------------FLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred CC-------------EEEEEccCCCcEEEEEEcCCCceEE
Confidence 88 5555554 55799999986554433
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.3e-09 Score=102.39 Aligned_cols=238 Identities=8% Similarity=-0.013 Sum_probs=135.7
Q ss_pred cEEEeeCC-ccccccccCcccEEEEEEeCCCCEE---EEEeCCC--eEEEEeCCCCCeeeEEeeccccccceeEeecCCC
Q 012007 144 NIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKI---FTGHQDG--KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNP 217 (473)
Q Consensus 144 ~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l---~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (473)
.|.+.|.. .....+......+..-+|+|||+.+ ++...+| .|.+.++.+++......
T Consensus 166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~----------------- 228 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA----------------- 228 (428)
T ss_pred eEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-----------------
Confidence 45555543 2233344455566778999999752 3444443 57777887765332221
Q ss_pred cceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC-CC----CEEEEEcCCC---eeeEEeecCCCceeEEEEcCCC
Q 012007 218 KNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW-DK----TLKVWRISDC---KCLESINAHDDAINSVVAGFDS 289 (473)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg----~v~vwd~~~~---~~~~~~~~~~~~v~~l~~~~~~ 289 (473)
........+|+|||+.|+..+. +| .+.+|++..+ +.......+........|+|++
T Consensus 229 ----------------~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG 292 (428)
T PRK01029 229 ----------------LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDG 292 (428)
T ss_pred ----------------CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCC
Confidence 2233446789999998887653 22 3444777653 3333333333344677999998
Q ss_pred -EEEE-EeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC---CcEEEEecCCcccccceee
Q 012007 290 -LVFT-GSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD---GLVNFWECEKHLSHGGVLR 364 (473)
Q Consensus 290 -~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~ 364 (473)
.|+. ...+|...+|.+....... ....+..+...+....|+|||+.|+....+ ..|.+||+.++........
T Consensus 293 ~~Laf~s~~~g~~~ly~~~~~~~g~---~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~ 369 (428)
T PRK01029 293 TRLVFVSNKDGRPRIYIMQIDPEGQ---SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS 369 (428)
T ss_pred CEEEEEECCCCCceEEEEECccccc---ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC
Confidence 4554 4456766666543211101 112233334566788999999988766443 3689999987543211111
Q ss_pred cCcceEEEEEecCCEEEEEeC---CCcEEEEecCCCCceeEEEEecCCCCceeEEEEecC
Q 012007 365 GHKMAVLCLAAAGNLVFSGSA---DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEED 421 (473)
Q Consensus 365 ~~~~~v~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 421 (473)
........+++||++|+.... ...|.+||+.++.. ..+ ....+.+...+|+|-
T Consensus 370 ~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~-~~L---t~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 370 PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT-RKI---VIGSGEKRFPSWGAF 425 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEe---ecCCCcccCceecCC
Confidence 122334667889988775433 34688888876322 222 223445677788875
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-09 Score=105.54 Aligned_cols=177 Identities=14% Similarity=0.108 Sum_probs=113.4
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCC---CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EE-EEEeCCC--cEEEEeCc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWD---KTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LV-FTGSADG--TVKVWRRE 306 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~d---g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l-~s~~~dg--~i~vwd~~ 306 (473)
+...+...+|+|+|++|+.+..+ ..|++||+.+++... +..+...+.++.|+|++ .| ++.+.++ .|.+||+.
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~ 266 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD 266 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC
Confidence 55568888999999999887654 479999998876543 33355566778999998 34 4555554 47778875
Q ss_pred ccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC-CC--cEEEEecCCcccccceeecCcceEEEEEecCCEEEEE
Q 012007 307 LQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-DG--LVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSG 383 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~ 383 (473)
.+. ...+..+........|+|+++.|+..+. ++ .|.++|+.+.........+.......++++|++|+.+
T Consensus 267 ~~~-------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~ 339 (417)
T TIGR02800 267 GKQ-------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFV 339 (417)
T ss_pred CCC-------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEE
Confidence 321 1222333444556789999988776543 33 5777787654322111122233345678889999988
Q ss_pred eCCC---cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 384 SADR---NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 384 ~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
+.++ .|.+||+.++. . ..+... .......|+|++.
T Consensus 340 ~~~~~~~~i~~~d~~~~~-~---~~l~~~-~~~~~p~~spdg~ 377 (417)
T TIGR02800 340 HREGGGFNIAVMDLDGGG-E---RVLTDT-GLDESPSFAPNGR 377 (417)
T ss_pred EccCCceEEEEEeCCCCC-e---EEccCC-CCCCCceECCCCC
Confidence 8775 78889987732 2 222222 2345568999988
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-09 Score=102.03 Aligned_cols=186 Identities=18% Similarity=0.262 Sum_probs=145.3
Q ss_pred cCCEEEEeeCCCcEEEeeCCcc--cccc---ccCcccEEEEEEe------C--------------CCCEEEEEeCCCeEE
Q 012007 132 SGDLLYTGSDSKNIRVWKNLKE--FSGF---KSNSGLVKAIIIS------G--------------DSNKIFTGHQDGKIR 186 (473)
Q Consensus 132 ~g~~l~tg~~dg~i~vwd~~~~--~~~~---~~h~~~V~~l~~s------~--------------~~~~l~s~~~dg~i~ 186 (473)
...++|....||.+|+|++.+. ...| ..-++..++..|. | |...++-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 3678999999999999996522 2222 2234555555552 1 345677888899999
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD 266 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~ 266 (473)
+|++..++........ +|.+.|.++.++.+-..|++++.|+.+..|+...
T Consensus 84 ~ys~~~g~it~~~st~------------------------------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~ 133 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTD------------------------------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE 133 (541)
T ss_pred EEEecCCeEEEEEecC------------------------------CCCCcceeeecccccCceEecCCceeEEEEeccc
Confidence 9999988766555433 3999999999999999999999999999999999
Q ss_pred CeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC-----CCEEE
Q 012007 267 CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE-----SAVVY 340 (473)
Q Consensus 267 ~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-----~~~l~ 340 (473)
.+.++.++.....+.+++++||+ .+++++ +.|++||++ ....+..+.+|.++|.+++|-.+ |.+++
T Consensus 134 ~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~------~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vL 205 (541)
T KOG4547|consen 134 KVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIE------TKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVL 205 (541)
T ss_pred ceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEcc------CceEEEEecCCCcceEEEEEEEeccccccceee
Confidence 99999999999999999999997 666554 789999996 44467889999999999999876 55555
Q ss_pred Ee-CCCCcEEEEecCC
Q 012007 341 CG-SSDGLVNFWECEK 355 (473)
Q Consensus 341 ~~-~~dg~i~iwd~~~ 355 (473)
++ ..+..+.+|-.+.
T Consensus 206 ssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 206 SSAAAERGITVWVVEK 221 (541)
T ss_pred eccccccceeEEEEEc
Confidence 44 4456677886653
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.9e-08 Score=93.50 Aligned_cols=251 Identities=12% Similarity=0.176 Sum_probs=150.9
Q ss_pred EEEEEecCCEEEEeeC----CCcEEEeeCCc------cccccccCcccEEEEEEeCCCCEEEEEeC-CCeEEEEeCCCCC
Q 012007 126 IYSLAASGDLLYTGSD----SKNIRVWKNLK------EFSGFKSNSGLVKAIIISGDSNKIFTGHQ-DGKIRIWKVSRKN 194 (473)
Q Consensus 126 V~~~~~~g~~l~tg~~----dg~i~vwd~~~------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-dg~i~vwd~~~~~ 194 (473)
-.++++++++|++... +|.|..|+... .+............+++++++++|+++.. +|.|.++++....
T Consensus 41 ~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g 120 (345)
T PF10282_consen 41 WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDG 120 (345)
T ss_dssp CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCc
Confidence 3456678999888876 56888886442 12222223445668999999999999875 8999999998753
Q ss_pred eeeEEe-eccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC-CCCEEEEEcCCCe--e-
Q 012007 195 ASVHKR-VGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISDCK--C- 269 (473)
Q Consensus 195 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg~v~vwd~~~~~--~- 269 (473)
...... ...... ...+ ..........++.|+|+++++++... ...|.+|++.... .
T Consensus 121 ~l~~~~~~~~~~g------~g~~-------------~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~ 181 (345)
T PF10282_consen 121 SLGEVVQTVRHEG------SGPN-------------PDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLT 181 (345)
T ss_dssp EEEEEEEEEESEE------EESS-------------TTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEE
T ss_pred ccceeeeecccCC------CCCc-------------ccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEE
Confidence 222211 100000 0000 00012345788999999999888753 3469999997654 2
Q ss_pred -eEEee-cCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCC-Ccceeeeeeec---cCCccEEEEEEccCCCEEEE
Q 012007 270 -LESIN-AHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGK-GTKHCLAQVLL---KHENAVTALAVNQESAVVYC 341 (473)
Q Consensus 270 -~~~~~-~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~~ 341 (473)
...+. .....-..+.|+|++ .+++...++.|.++++..... .........+. ........|+++|+|++|++
T Consensus 182 ~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyv 261 (345)
T PF10282_consen 182 PVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYV 261 (345)
T ss_dssp EEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEE
T ss_pred EeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEE
Confidence 22232 344567889999997 445666788999998872211 11111111111 11236889999999999887
Q ss_pred eC-CCCcEEEEecCCc--c-cccceee--cCcceEEEEEecCCEEEEEe-CCCcEEEEecC
Q 012007 342 GS-SDGLVNFWECEKH--L-SHGGVLR--GHKMAVLCLAAAGNLVFSGS-ADRNICLWRRE 395 (473)
Q Consensus 342 ~~-~dg~i~iwd~~~~--~-~~~~~~~--~~~~~v~~~~~~~~~l~s~~-~dg~i~iwd~~ 395 (473)
+. .++.|.+|++... . ....... +..-.-+.++++|++|+++. .++.|.+|+++
T Consensus 262 snr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 262 SNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 65 4568999998421 1 1111221 22234567778999998887 56789999885
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3e-09 Score=99.49 Aligned_cols=204 Identities=14% Similarity=0.205 Sum_probs=141.2
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEE----EcCC
Q 012007 171 GDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS----LNAE 246 (473)
Q Consensus 171 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~----~~~~ 246 (473)
|-..|+|....||.+++|+...++....+....... ........ . ...-.......++. -+.+
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s--------~t~~~~~w-~----L~~~~s~~k~~~~~~~~~~s~~ 69 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLS--------GTCTYTKW-G----LSADYSPMKWLSLEKAKKASLD 69 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhcc--------CcceeEEE-E----EEeccchHHHHhHHHHhhccCC
Confidence 345689999999999999998886544332111000 00000000 0 00000000011111 1224
Q ss_pred CCEEEEEeCCCCEEEEEcCCCeeeEEee--cCCCceeEEEEcCC-CEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccC
Q 012007 247 QGLLYSGSWDKTLKVWRISDCKCLESIN--AHDDAINSVVAGFD-SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKH 323 (473)
Q Consensus 247 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~v~~l~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 323 (473)
-..++-|...|.|.+|++..++....+. .|.+.|+++.++.+ +.|.+++.|+.+..|+.. ...........
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~------~~~~~~~~~~~ 143 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK------EKVIIRIWKEQ 143 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecc------cceeeeeeccC
Confidence 4578888899999999999999888876 68999999998766 489999999999999985 33345566677
Q ss_pred CccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEec-------CCEEEEE-eCCCcEEEEecC
Q 012007 324 ENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA-------GNLVFSG-SADRNICLWRRE 395 (473)
Q Consensus 324 ~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-------~~~l~s~-~~dg~i~iwd~~ 395 (473)
...+.+++++||+..+++++ +.|++||+++. +....+.||...|.++++- |.+++++ ..+..|.+|-+.
T Consensus 144 ~~~~~sl~is~D~~~l~~as--~~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 144 KPLVSSLCISPDGKILLTAS--RQIKVLDIETK-EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred CCccceEEEcCCCCEEEecc--ceEEEEEccCc-eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 78899999999999999886 58999999985 4457889999999988862 5565554 456678888776
Q ss_pred C
Q 012007 396 E 396 (473)
Q Consensus 396 ~ 396 (473)
.
T Consensus 221 ~ 221 (541)
T KOG4547|consen 221 K 221 (541)
T ss_pred c
Confidence 5
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.3e-09 Score=101.07 Aligned_cols=196 Identities=11% Similarity=0.058 Sum_probs=120.6
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCC---CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEE-EEeCCC--cEEEEeCc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWD---KTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF-TGSADG--TVKVWRRE 306 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~d---g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~-s~~~dg--~i~vwd~~ 306 (473)
+...+....|+|+|+.|+..+.+ ..|.+||+.+++... +....+.+....|+|++ .|+ +...+| .|.+||+.
T Consensus 197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~ 275 (430)
T PRK00178 197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA 275 (430)
T ss_pred CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC
Confidence 66678899999999998876643 359999998876543 22233445578999998 444 555555 57777876
Q ss_pred ccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC-CCC--cEEEEecCCcccccceeecCcceEEEEEecCCEEEEE
Q 012007 307 LQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS-SDG--LVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSG 383 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~ 383 (473)
.+. ...+..+........|+|+++.|+..+ .+| .|.++|+.++........+.......++++|++|+..
T Consensus 276 ~~~-------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 276 SRQ-------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMV 348 (430)
T ss_pred CCC-------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEE
Confidence 322 122333444566789999998776554 334 5777777654432222223333446788999988877
Q ss_pred eCC-C--cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCc--EEEEEcCC
Q 012007 384 SAD-R--NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKS--VKVWRVSE 454 (473)
Q Consensus 384 ~~d-g--~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~--v~iW~i~~ 454 (473)
+.+ + .|.+||+.++. ...+.. ........|+|+++. ++++...+|. |.++++..
T Consensus 349 ~~~~~~~~l~~~dl~tg~-~~~lt~----~~~~~~p~~spdg~~------------i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 349 HRQDGNFHVAAQDLQRGS-VRILTD----TSLDESPSVAPNGTM------------LIYATRQQGRGVLMLVSING 407 (430)
T ss_pred EccCCceEEEEEECCCCC-EEEccC----CCCCCCceECCCCCE------------EEEEEecCCceEEEEEECCC
Confidence 643 3 47888988743 222221 122235689999883 4444444443 55666643
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-09 Score=92.35 Aligned_cols=206 Identities=13% Similarity=0.122 Sum_probs=139.8
Q ss_pred ccCCeeEEEEcC---CCC-EEEEEeCCCCEEEEEcCCCeeeEEeecCC------CceeEEEEcCCC-EEEEEeCCCcEEE
Q 012007 234 HYDAVSCLSLNA---EQG-LLYSGSWDKTLKVWRISDCKCLESINAHD------DAINSVVAGFDS-LVFTGSADGTVKV 302 (473)
Q Consensus 234 ~~~~v~~l~~~~---~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~------~~v~~l~~~~~~-~l~s~~~dg~i~v 302 (473)
.+..+..+.|.. ++. .|+-+-.+|.|.++..........+++-. ....++.|++.+ .++++-.+|.+.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG 147 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence 344556666653 444 56667778999999876544444443211 123456677766 7888889999985
Q ss_pred EeCcccCCCcceeeeeeeccCCccEEEEEEcc-CCCEEEEeCCCCcEEEEecCCcccc-cceeecCcceEEEEEec---C
Q 012007 303 WRRELQGKGTKHCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKHLSH-GGVLRGHKMAVLCLAAA---G 377 (473)
Q Consensus 303 wd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~---~ 377 (473)
.+... ......+..+.|+-++....|+. +-+++++|+.|+.+..||++-.... -...+-|...|.++..+ +
T Consensus 148 v~~t~----~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~ 223 (339)
T KOG0280|consen 148 VYETE----MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKP 223 (339)
T ss_pred Eecce----eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCC
Confidence 55421 22333457889999999999986 4478999999999999999833322 22345678888888644 6
Q ss_pred CEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 378 NLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 378 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
.++++|+.|-.|++||.++. .+++..- .-.+.|..+.++|...+ .|+.++.-.-.+|-+++....
T Consensus 224 ~~I~TGsYDe~i~~~DtRnm--~kPl~~~-~v~GGVWRi~~~p~~~~------------~lL~~CMh~G~ki~~~~~~~~ 288 (339)
T KOG0280|consen 224 TYIATGSYDECIRVLDTRNM--GKPLFKA-KVGGGVWRIKHHPEIFH------------RLLAACMHNGAKILDSSDKVL 288 (339)
T ss_pred ceEEEeccccceeeeehhcc--cCccccC-ccccceEEEEecchhhh------------HHHHHHHhcCceEEEeccccc
Confidence 79999999999999999964 3334332 23478999999997653 445555555577777766554
Q ss_pred C
Q 012007 458 D 458 (473)
Q Consensus 458 ~ 458 (473)
.
T Consensus 289 e 289 (339)
T KOG0280|consen 289 E 289 (339)
T ss_pred c
Confidence 4
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.8e-08 Score=101.42 Aligned_cols=313 Identities=12% Similarity=0.039 Sum_probs=178.6
Q ss_pred cccEEEEEe--cCCEEEEeeCCCcEEEe----eCCcccc-ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCe
Q 012007 123 EGHIYSLAA--SGDLLYTGSDSKNIRVW----KNLKEFS-GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNA 195 (473)
Q Consensus 123 ~~~V~~~~~--~g~~l~tg~~dg~i~vw----d~~~~~~-~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 195 (473)
.+.|.++.+ +..-++.+..+|.|.+. +...... ....-...|.+++||||+..|+....+++|.+..- +.+.
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~ 153 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDP 153 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceE
Confidence 355667764 46678888888989888 5443322 22334678999999999999999999999887643 2222
Q ss_pred eeEEeecccccc-ceeEeec-CCCcceEEEeecc--------e------eeEeeccCCeeEEEEcCCCCEEEEEeC---C
Q 012007 196 SVHKRVGSLPTF-KDYVKSS-VNPKNYVEVRRNR--------S------VLKIRHYDAVSCLSLNAEQGLLYSGSW---D 256 (473)
Q Consensus 196 ~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~--------~------~~~~~~~~~v~~l~~~~~~~~l~s~s~---d 256 (473)
.....+...... ...+.-. ............+ + ...+...+.-..|+|-.||.++|+.+. .
T Consensus 154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~ 233 (928)
T PF04762_consen 154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPET 233 (928)
T ss_pred EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCC
Confidence 222222211100 0111000 0000000000000 0 001114445678999999999999874 2
Q ss_pred ---CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeC----CCcEEEEeCcccCCCcceeeeeeeccCCccEEE
Q 012007 257 ---KTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSA----DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTA 329 (473)
Q Consensus 257 ---g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~ 329 (473)
..++||+- .|.....-+.-.+--.+++|.|.|.++++.. ...|.+|..+.-. ...+..........|..
T Consensus 234 ~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr---hgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 234 GSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR---HGEFTLRFDPEEEKVIE 309 (928)
T ss_pred CceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE---eeeEecCCCCCCceeeE
Confidence 46999985 4665554444444556789999995444433 3567777654211 11122222345678999
Q ss_pred EEEccCCCEEEEeCCCCcEEEEecCCcccc-cceee-cCcceE--EEEEec-CCEEEEEeCCCcEEEEecC----CC---
Q 012007 330 LAVNQESAVVYCGSSDGLVNFWECEKHLSH-GGVLR-GHKMAV--LCLAAA-GNLVFSGSADRNICLWRRE----ES--- 397 (473)
Q Consensus 330 l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~-~~~~~v--~~~~~~-~~~l~s~~~dg~i~iwd~~----~~--- 397 (473)
+.|++++..||....|. |.+|-..+..-. ++.+. .....+ ..|++. ...|...+.+|.+..++.. .+
T Consensus 310 l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~ 388 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGS 388 (928)
T ss_pred EEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCC
Confidence 99999999999987665 999987653211 11222 111112 333332 4455555555555443321 11
Q ss_pred ------------------------C--ceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 398 ------------------------G--AHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 398 ------------------------~--~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
. +..+...+. -..+|.+++|+++.. .+++-..||.|.+|.
T Consensus 389 ~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~-------------~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 389 SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNS-------------RFAVLTSDGSLSIYE 454 (928)
T ss_pred CccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCC-------------eEEEEECCCCEEEEE
Confidence 0 000111121 246799999999987 688889999999999
Q ss_pred cCCC
Q 012007 452 VSEH 455 (473)
Q Consensus 452 i~~~ 455 (473)
....
T Consensus 455 ~~~~ 458 (928)
T PF04762_consen 455 WDLK 458 (928)
T ss_pred ecCC
Confidence 6554
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.1e-08 Score=93.45 Aligned_cols=290 Identities=12% Similarity=0.081 Sum_probs=157.8
Q ss_pred ecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccc--
Q 012007 131 ASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPT-- 206 (473)
Q Consensus 131 ~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-- 206 (473)
..++.+++++.+|.|..+|.. +.+-.+............ ++..++.++.+|.+..+|..+++............
T Consensus 63 v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 140 (377)
T TIGR03300 63 VAGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSP 140 (377)
T ss_pred EECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecC
Confidence 457788888888888888854 222222222111112222 45688888899999999998887765444322110
Q ss_pred --c--ceeEeecCCCc-ceEEEeecceeeEeeccCCeeEEE--EcC--CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCC
Q 012007 207 --F--KDYVKSSVNPK-NYVEVRRNRSVLKIRHYDAVSCLS--LNA--EQGLLYSGSWDKTLKVWRISDCKCLESINAHD 277 (473)
Q Consensus 207 --~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~l~--~~~--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 277 (473)
. ..++....+.. ..+...................+. -+| .+..++.+..++.+..+|.++|+.+.......
T Consensus 141 p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~ 220 (377)
T TIGR03300 141 PLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVAL 220 (377)
T ss_pred CEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeecccc
Confidence 0 01111111111 111111111111111111111000 001 23467888889999999999998776543210
Q ss_pred C----c------e-eEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC
Q 012007 278 D----A------I-NSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG 346 (473)
Q Consensus 278 ~----~------v-~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg 346 (473)
. . + ....+ .++.+++++.+|.+..||...++. ... .. .. ...... ..+..+++++.||
T Consensus 221 ~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~--~W~----~~-~~-~~~~p~--~~~~~vyv~~~~G 289 (377)
T TIGR03300 221 PKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRV--LWK----RD-AS-SYQGPA--VDDNRLYVTDADG 289 (377)
T ss_pred CCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCCcE--EEe----ec-cC-CccCce--EeCCEEEEECCCC
Confidence 0 0 1 01111 256888889999999999875431 111 11 11 111122 2456788888999
Q ss_pred cEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCc
Q 012007 347 LVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDH 426 (473)
Q Consensus 347 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~ 426 (473)
.|..+|..++...-................+..|++++.+|.|+++|..+ .+.+..+..+...+..--...++
T Consensus 290 ~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~t---G~~~~~~~~~~~~~~~sp~~~~~---- 362 (377)
T TIGR03300 290 VVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSRED---GSFVARLKTDGSGIASPPVVVGD---- 362 (377)
T ss_pred eEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCC---CCEEEEEEcCCCccccCCEEECC----
Confidence 99999998765432211111111222233578999999999999999988 45566666555433322222233
Q ss_pred ccccCCCccEEEEEeeCCCcEEEE
Q 012007 427 EYHQKGDQRWTVYSGSLDKSVKVW 450 (473)
Q Consensus 427 ~~~~~~~~~~~l~s~s~Dg~v~iW 450 (473)
.|+.++.||.|..+
T Consensus 363 ----------~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 363 ----------GLLVQTRDGDLYAF 376 (377)
T ss_pred ----------EEEEEeCCceEEEe
Confidence 47888899999876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-08 Score=99.37 Aligned_cols=195 Identities=12% Similarity=0.068 Sum_probs=115.9
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCC-C--CEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EE-EEEeCCCc--EEEEeCc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWD-K--TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LV-FTGSADGT--VKVWRRE 306 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~d-g--~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l-~s~~~dg~--i~vwd~~ 306 (473)
+...+.+..|+|||+.|+..+.+ + .|++||+.+++... +...........|+|++ .| ++.+.+|. |.++|+.
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~ 294 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA 294 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence 55678889999999988876543 2 58899998876432 22223334567899998 34 45666776 6666665
Q ss_pred ccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC-CC--cEEEEecCCcccccceeecCcceEEEEEecCCEEEEE
Q 012007 307 LQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-DG--LVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSG 383 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~ 383 (473)
.+. ...+..+.......+|+||++.|+..+. ++ .|.++|+.++........++.....+++++|++|+..
T Consensus 295 tg~-------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~ 367 (448)
T PRK04792 295 TKA-------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMV 367 (448)
T ss_pred CCC-------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEE
Confidence 321 1223334455677899999988766543 44 4666677654332112223333335788999988776
Q ss_pred eC-CC--cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCc--EEEEEcC
Q 012007 384 SA-DR--NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKS--VKVWRVS 453 (473)
Q Consensus 384 ~~-dg--~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~--v~iW~i~ 453 (473)
+. ++ .|.++|+.++. .. .+... .......|+|+++. ++++...+|. +.+++..
T Consensus 368 ~~~~g~~~I~~~dl~~g~-~~---~lt~~-~~d~~ps~spdG~~------------I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 368 NRTNGKFNIARQDLETGA-MQ---VLTST-RLDESPSVAPNGTM------------VIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred EecCCceEEEEEECCCCC-eE---EccCC-CCCCCceECCCCCE------------EEEEEecCCceEEEEEECC
Confidence 54 34 35556766632 12 22221 12234579999883 4555555554 5566654
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.4e-10 Score=94.40 Aligned_cols=232 Identities=18% Similarity=0.285 Sum_probs=140.7
Q ss_pred EEEEEec-CCEEEEeeCCCcEEEeeCC--------------ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 126 IYSLAAS-GDLLYTGSDSKNIRVWKNL--------------KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 126 V~~~~~~-g~~l~tg~~dg~i~vwd~~--------------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
|..+.+. ...|+++..++.+...... ..+..+..|.++-.+-+.+-.++.++++..||.+.+.+.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST 118 (319)
T ss_pred EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence 4445544 3456777666665555321 223334444444434444445678999999999999998
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-----CCCCEEEEEcC
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-----WDKTLKVWRIS 265 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-----~dg~v~vwd~~ 265 (473)
+...... .++... |.+. .+.+....++.+.++. .-+..+.|+++
T Consensus 119 ~~~~~~~-~~i~~~-----------------------------~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~ 167 (319)
T KOG4714|consen 119 DKDLALM-SRIPSI-----------------------------HSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLD 167 (319)
T ss_pred hHHHhhh-hhcccc-----------------------------cccc-cccceeecccEEecCCcceEeeccceeeeccc
Confidence 6521111 111100 1111 1122222344444432 12346667665
Q ss_pred CCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc-CCCEEEEe
Q 012007 266 DCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ-ESAVVYCG 342 (473)
Q Consensus 266 ~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~ 342 (473)
..+.+..-+.....|.+++-+|.. ++++|+.||.+-+||.+. ...+...+..|+.++..+-|+| ++..|+++
T Consensus 168 p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn-----~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~ 242 (319)
T KOG4714|consen 168 PIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARN-----VAMPVSLLKAHKAEIWEVHFHPKNPEHLFTC 242 (319)
T ss_pred ccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEccc-----ccchHHHHHHhhhhhhheeccCCCchheeEe
Confidence 444333222233458888888765 888999999999999983 3445677889999999999999 56889999
Q ss_pred CCCCcEEEEecCCcccc-----------------------cceeecCcceEEEEEecCCEEEEEeCCCcEEEEe
Q 012007 343 SSDGLVNFWECEKHLSH-----------------------GGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWR 393 (473)
Q Consensus 343 ~~dg~i~iwd~~~~~~~-----------------------~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd 393 (473)
+.||.+.-||..+...- ...+......|..|..-|..|++|+.-+.|++++
T Consensus 243 sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 243 SEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 99999999997631110 0111122233445555588999999888888875
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.7e-10 Score=116.70 Aligned_cols=195 Identities=15% Similarity=0.266 Sum_probs=147.4
Q ss_pred ceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec-CCCceeEEEEcCCC-EEEEEeCCCcEEEEe
Q 012007 227 RSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA-HDDAINSVVAGFDS-LVFTGSADGTVKVWR 304 (473)
Q Consensus 227 ~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd 304 (473)
.......+-..|.++.-+|...+.++|+.||.|++|....++.+..+.. ....|+.+.|+..| .+..+..||.+.+|.
T Consensus 2200 ~~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2200 ASVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred ceeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecc
Confidence 3444555778899999999999999999999999999988888877752 23678888887776 888889999999998
Q ss_pred CcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC---CCCcEEEEecCCcccccceeecCcceEEEEE--ecCCE
Q 012007 305 RELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS---SDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNL 379 (473)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~ 379 (473)
.. ..+......|+.....+.|-. ..+++++ .++.+.+||.-.......+...|...++++. |.-++
T Consensus 2280 ~~-------pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~ql 2350 (2439)
T KOG1064|consen 2280 AS-------PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQL 2350 (2439)
T ss_pred cC-------CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceE
Confidence 75 223455667888888888875 4566543 4678999997543333333466777666665 66789
Q ss_pred EEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 380 VFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 380 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
|++|+.+|.|++||++. .++...+.. ++ ... +|++|+..|.++||++....
T Consensus 2351 lisggr~G~v~l~D~rq---rql~h~~~~---------~~-~~~-------------~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2351 LISGGRKGEVCLFDIRQ---RQLRHTFQA---------LD-TRE-------------YFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred EEecCCcCcEEEeehHH---HHHHHHhhh---------hh-hhh-------------eeeccCcccceEEEEccccc
Confidence 99999999999999987 344333332 33 333 89999999999999998763
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.2e-08 Score=87.64 Aligned_cols=171 Identities=13% Similarity=0.066 Sum_probs=128.1
Q ss_pred cCCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCC-eEEEEeCCCCCeeeEEeecccccccee
Q 012007 132 SGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG-KIRIWKVSRKNASVHKRVGSLPTFKDY 210 (473)
Q Consensus 132 ~g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~ 210 (473)
+|++++.-+. |...|.+.......-.+|.+.|.-..+..+++-++.|..|| .+-|+|..+++......
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~---------- 399 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK---------- 399 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC----------
Confidence 4888888886 67777766555555566888899999998888999999999 89999999887543332
Q ss_pred EeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-
Q 012007 211 VKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS- 289 (473)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~- 289 (473)
.-+.|.++..+++|++++++.....|.+.|+.++.....-+...+-|+.+.|+|++
T Consensus 400 -----------------------~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr 456 (668)
T COG4946 400 -----------------------DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSR 456 (668)
T ss_pred -----------------------CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCce
Confidence 56789999999999999999998999999999998766666677889999999998
Q ss_pred EEEEEeCC----CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC
Q 012007 290 LVFTGSAD----GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS 343 (473)
Q Consensus 290 ~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 343 (473)
+++-+--+ ..|+++|+..+. ..-+.+..++ =.+-+|.|++++|+--+
T Consensus 457 ~iAYafP~gy~tq~Iklydm~~~K----iy~vTT~ta~---DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 457 WIAYAFPEGYYTQSIKLYDMDGGK----IYDVTTPTAY---DFSPAFDPDGRYLYFLS 507 (668)
T ss_pred eEEEecCcceeeeeEEEEecCCCe----EEEecCCccc---ccCcccCCCCcEEEEEe
Confidence 56555444 468999986321 1111111122 23457888888876543
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.9e-07 Score=77.94 Aligned_cols=193 Identities=10% Similarity=0.089 Sum_probs=117.6
Q ss_pred CeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec-------CCCceeEEEEcCCC-------EEEEEeCCCcEEE
Q 012007 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA-------HDDAINSVVAGFDS-------LVFTGSADGTVKV 302 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-------~~~~v~~l~~~~~~-------~l~s~~~dg~i~v 302 (473)
.-.-++|+||+.+||.+...|+|+++|+... .+..+.. -..+|..+.|.+.. .|++-..+|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 3457999999999999999999999999653 3333332 12456666664332 5777788888888
Q ss_pred EeCcccC--CCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe--c-C
Q 012007 303 WRRELQG--KGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--A-G 377 (473)
Q Consensus 303 wd~~~~~--~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~-~ 377 (473)
|-+..+. .............+...|.++.++|..++|++|+.... ++ ....+....++++.. + .
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~-----~~s~a~~~GLtaWRiL~~~P 192 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QD-----GMSKASSCGLTAWRILSDSP 192 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CC-----ccccccccCceEEEEcCCCC
Confidence 8764321 11111112223345778999999999998888775432 00 011122223333332 1 1
Q ss_pred CEE-EEEeCCCc------EEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEE
Q 012007 378 NLV-FSGSADRN------ICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVW 450 (473)
Q Consensus 378 ~~l-~s~~~dg~------i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW 450 (473)
-+. ++...|+. -.+|.+-+ .............|..|..+||+. +||+...+|.|.+|
T Consensus 193 yyk~v~~~~~~~~~~~~~~~~~~~~~---~~~fs~~~~~~d~i~kmSlSPdg~-------------~La~ih~sG~lsLW 256 (282)
T PF15492_consen 193 YYKQVTSSEDDITASSKRRGLLRIPS---FKFFSRQGQEQDGIFKMSLSPDGS-------------LLACIHFSGSLSLW 256 (282)
T ss_pred cEEEccccCccccccccccceeeccc---eeeeeccccCCCceEEEEECCCCC-------------EEEEEEcCCeEEEE
Confidence 111 12222221 23444433 222222233467899999999999 99999999999999
Q ss_pred EcCCCCC
Q 012007 451 RVSEHAP 457 (473)
Q Consensus 451 ~i~~~~~ 457 (473)
++.....
T Consensus 257 ~iPsL~~ 263 (282)
T PF15492_consen 257 EIPSLRL 263 (282)
T ss_pred ecCcchh
Confidence 9987643
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.2e-07 Score=86.47 Aligned_cols=306 Identities=12% Similarity=0.113 Sum_probs=178.7
Q ss_pred cccEEEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeC-----------CCeEEEEe
Q 012007 123 EGHIYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQ-----------DGKIRIWK 189 (473)
Q Consensus 123 ~~~V~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-----------dg~i~vwd 189 (473)
+.....++|-|.||+|--.-| |.+|--. ..++.+. |. .|.-+.|||+.+||+|=+. ...++|||
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 445667888899999998865 7899533 2333332 43 4899999999999999653 15799999
Q ss_pred CCCCCeeeEEeeccccc-cceeEeecCCCcceEE-------EeecceeeEee----ccCCeeEEEEcCCCCEEEEEeC--
Q 012007 190 VSRKNASVHKRVGSLPT-FKDYVKSSVNPKNYVE-------VRRNRSVLKIR----HYDAVSCLSLNAEQGLLYSGSW-- 255 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~~~----~~~~v~~l~~~~~~~~l~s~s~-- 255 (473)
+.++.....+.....+. ...++.-+.+.+.+.. +.......++. .-..|....|+|.+++||-=..
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~ 368 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET 368 (698)
T ss_pred ccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccc
Confidence 99998776665521111 1111111122211111 11111111111 2346777888888777664321
Q ss_pred ---CCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEE----------EeCCCcEEEEeCcccCCCcceeeeeeec
Q 012007 256 ---DKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFT----------GSADGTVKVWRRELQGKGTKHCLAQVLL 321 (473)
Q Consensus 256 ---dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s----------~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 321 (473)
-..+.+..+.+++.+++.+.+.-.=..+.|...| +|.. .+.-..+.|+.++..+ ......
T Consensus 369 ~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd------Ipve~v 442 (698)
T KOG2314|consen 369 NNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD------IPVEVV 442 (698)
T ss_pred cCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC------CCceee
Confidence 1246666777777666655544333344565555 3321 1111234455554211 112223
Q ss_pred cCCccEEEEEEccCCCEEEEeCC---CCcEEEEecCC-c--ccccceeecCcceEEEEEecCCEEEEEe---CCCcEEEE
Q 012007 322 KHENAVTALAVNQESAVVYCGSS---DGLVNFWECEK-H--LSHGGVLRGHKMAVLCLAAAGNLVFSGS---ADRNICLW 392 (473)
Q Consensus 322 ~~~~~v~~l~~~~~~~~l~~~~~---dg~i~iwd~~~-~--~~~~~~~~~~~~~v~~~~~~~~~l~s~~---~dg~i~iw 392 (473)
.-...|...+|-|.|+.+++-+. ..++.+|.+++ . ..+...+......-..++|.|++++.+. ..|.+.++
T Consensus 443 elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~ 522 (698)
T KOG2314|consen 443 ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFY 522 (698)
T ss_pred ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEE
Confidence 34567889999999977665433 35788898873 1 1222233333344566788899988764 56889999
Q ss_pred ecCCCCceeEEEE-ecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeC------CCcEEEEEcCC
Q 012007 393 RREESGAHSCLAV-LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSL------DKSVKVWRVSE 454 (473)
Q Consensus 393 d~~~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~------Dg~v~iW~i~~ 454 (473)
|+... .+... ...| -..+.+.|.|.|+ +++|++. |.--+||++..
T Consensus 523 D~~~a---~~k~~~~~eh-~~at~veWDPtGR-------------YvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 523 DTDYA---DLKDTASPEH-FAATEVEWDPTGR-------------YVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred ecchh---hhhhccCccc-cccccceECCCCC-------------EEEEeeehhhhccccceEEEEeec
Confidence 98741 11111 1233 3468899999999 8888774 55577888864
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.6e-09 Score=101.83 Aligned_cols=244 Identities=14% Similarity=0.114 Sum_probs=164.5
Q ss_pred CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 160 NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
......|++|+.+..+++.||.||.++|..+.+........--..+ ..-.....+-||...|.
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~-----------------snLsmNQtLeGH~~sV~ 75 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAA-----------------SNLSMNQTLEGHNASVM 75 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccc-----------------cccchhhhhccCcceEE
Confidence 3466899999999999999999999999998765432221110000 00011123347999999
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEe--ecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceee
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI--NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCL 316 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~--~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~ 316 (473)
.+.|+.+.+.|-+...+|-|.+|-+-.+.-...+ ...+..|.+++|..+| .+.....||.|.+=.++... ..
T Consensus 76 vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-----Iw 150 (1189)
T KOG2041|consen 76 VVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-----IW 150 (1189)
T ss_pred EEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-----ec
Confidence 9999999999999999999999999877654433 2355678899998887 77777788877665554111 00
Q ss_pred eeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccc----------e--eecCcceEEEE--------Eec
Q 012007 317 AQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGG----------V--LRGHKMAVLCL--------AAA 376 (473)
Q Consensus 317 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----------~--~~~~~~~v~~~--------~~~ 376 (473)
-+.+.+ .....+.|++|.+.++.+-.+|.+.+||.+....... . ..+|...-.++ -|+
T Consensus 151 gKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pd 228 (1189)
T KOG2041|consen 151 GKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPD 228 (1189)
T ss_pred chhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCC
Confidence 111111 1234688999999999999999999999764322110 0 11222222222 245
Q ss_pred CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCC
Q 012007 377 GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLD 444 (473)
Q Consensus 377 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~D 444 (473)
...|+++..+|.++|-.-.+.. .++..-.+ -.|..+.|+++|. +|+.+|.|
T Consensus 229 rP~lavcy~nGr~QiMR~eND~--~Pvv~dtg--m~~vgakWnh~G~-------------vLAvcG~~ 279 (1189)
T KOG2041|consen 229 RPRLAVCYANGRMQIMRSENDP--EPVVVDTG--MKIVGAKWNHNGA-------------VLAVCGND 279 (1189)
T ss_pred CCEEEEEEcCceehhhhhcCCC--CCeEEecc--cEeecceecCCCc-------------EEEEccCc
Confidence 6789999999999998766642 33333233 5689999999998 88888865
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.1e-10 Score=104.06 Aligned_cols=214 Identities=14% Similarity=0.207 Sum_probs=145.1
Q ss_pred ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee
Q 012007 154 FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233 (473)
Q Consensus 154 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (473)
+..+.+|...|..++--.+.+-+++++.|++|++|.+.......... ........
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~ts-------------------------aCQfTY~a 782 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTS-------------------------ACQFTYQA 782 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccc-------------------------eeeeEhhh
Confidence 45688999999999888788899999999999999986542111000 00011124
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee-----cCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN-----AHDDAINSVVAGFDS-LVFTGSADGTVKVWRREL 307 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-----~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~ 307 (473)
|+.+|.++.|-.+.++++++ ||-|.+||.--++.+..+. +..+.|.|+.--... .++.++...+|+++|.+.
T Consensus 783 Hkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRs 860 (1034)
T KOG4190|consen 783 HKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARS 860 (1034)
T ss_pred ccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccc
Confidence 99999999999988777654 7899999987777765432 122334444322223 444458899999999885
Q ss_pred cCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEE-EecCCEEEEEeCC
Q 012007 308 QGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCL-AAAGNLVFSGSAD 386 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~-~~~~~~l~s~~~d 386 (473)
.+-.... .+....+.+..+.+++..+.|+.++++-.+|.|.+.|.++++... ..+........+ +|..+.|+....|
T Consensus 861 ce~~~E~-kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vIN-swrpmecdllqlaapsdq~L~~sald 938 (1034)
T KOG4190|consen 861 CEWTCEL-KVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVIN-SWRPMECDLLQLAAPSDQALAQSALD 938 (1034)
T ss_pred ccceeeE-EeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceec-cCCcccchhhhhcCchhHHHHhhccc
Confidence 4321111 111223445678999999999999999999999999999876543 222222223333 4667788888888
Q ss_pred CcEEE-EecCC
Q 012007 387 RNICL-WRREE 396 (473)
Q Consensus 387 g~i~i-wd~~~ 396 (473)
.++.+ |-...
T Consensus 939 HslaVnWhald 949 (1034)
T KOG4190|consen 939 HSLAVNWHALD 949 (1034)
T ss_pred ceeEeeehhcC
Confidence 88888 87655
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.3e-10 Score=102.46 Aligned_cols=283 Identities=13% Similarity=0.187 Sum_probs=176.9
Q ss_pred eeeeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCCc---------cccccccCcccEEEEEEeCCCCEEEEEeCCCe
Q 012007 116 IGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK---------EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGK 184 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~---------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~ 184 (473)
...+.||+..|.++.. +.+-+++++.|++|++|.+.. ..-++..|+.+|..+.|-.+-++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 3457789998888764 366789999999999997542 344678899999999999998888765 788
Q ss_pred EEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE-eCCCCEEEEE
Q 012007 185 IRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTLKVWR 263 (473)
Q Consensus 185 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg~v~vwd 263 (473)
|.+||.--+....+...... -+....|.|+.- -+..+++.| +...+|+++|
T Consensus 806 iHlWDPFigr~Laq~~dapk---------------------------~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~D 857 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPK---------------------------EGAGGNIKCLEN-VDRHILIAGCSAESTVKLFD 857 (1034)
T ss_pred ceeecccccchhHhhhcCcc---------------------------cCCCceeEeccc-Ccchheeeeccchhhheeee
Confidence 99999765543322111100 012233444421 134455554 7888999999
Q ss_pred cCCCeeeEEee-----cCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCC
Q 012007 264 ISDCKCLESIN-----AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESA 337 (473)
Q Consensus 264 ~~~~~~~~~~~-----~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 337 (473)
.+.++...+++ +....+.+++..+.| .++++-.+|.|.+.|.+.+.....+ ...+.....++ .|..+
T Consensus 858 aRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINsw------rpmecdllqla-apsdq 930 (1034)
T KOG4190|consen 858 ARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSW------RPMECDLLQLA-APSDQ 930 (1034)
T ss_pred cccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccC------Ccccchhhhhc-CchhH
Confidence 99887766664 345678899998887 8999999999999999855422211 11122222222 24455
Q ss_pred EEEEeCCCCcEEE-EecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCC-CceeEEEEec--CCCCce
Q 012007 338 VVYCGSSDGLVNF-WECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREES-GAHSCLAVLT--GHTGPV 413 (473)
Q Consensus 338 ~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~--~h~~~V 413 (473)
.|+....|..+.+ |..-.+....+. +....+..-+..-|.-|+++.....+.+|.-... .....+..++ ...+..
T Consensus 931 ~L~~saldHslaVnWhaldgimh~q~-kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~l 1009 (1034)
T KOG4190|consen 931 ALAQSALDHSLAVNWHALDGIMHLQD-KPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTL 1009 (1034)
T ss_pred HHHhhcccceeEeeehhcCCeeeecc-CCCCcchhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCcc
Confidence 6777777777877 765443322111 1111111122233666777777777888853220 0111122222 235677
Q ss_pred eEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEE
Q 012007 414 KCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKV 449 (473)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~i 449 (473)
++++.-|-.. .++.|...|.|.+
T Consensus 1010 Tala~LPLN~-------------afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1010 TALAPLPLNC-------------AFLAGNEHGAIAL 1032 (1034)
T ss_pred ceeeeccccc-------------hhhccCCCCceee
Confidence 8899888776 5778888888765
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.6e-08 Score=91.12 Aligned_cols=236 Identities=13% Similarity=0.112 Sum_probs=150.4
Q ss_pred CCcEEEeeCCcc-ccccccCcccEEEEEEeCCC--CEEEE-----EeCCCeEEEEeCCCCCeeeEEeeccccccceeEee
Q 012007 142 SKNIRVWKNLKE-FSGFKSNSGLVKAIIISGDS--NKIFT-----GHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKS 213 (473)
Q Consensus 142 dg~i~vwd~~~~-~~~~~~h~~~V~~l~~s~~~--~~l~s-----~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 213 (473)
.+.+.+|++... ....+-|...|+.+.++|.+ ..||+ .|.-+.|+||...............+ .
T Consensus 145 ~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF------F-- 216 (566)
T KOG2315|consen 145 SNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF------F-- 216 (566)
T ss_pred cceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc------c--
Confidence 467999987641 12233467889999999873 34443 34556899998762221111000000 0
Q ss_pred cCCCcceEEEeecceeeEeeccCCeeEEEEcCCCC-EEEEE--eCC---------CCEEEEEcCCCeeeEEeecCCCcee
Q 012007 214 SVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQG-LLYSG--SWD---------KTLKVWRISDCKCLESINAHDDAIN 281 (473)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~s~--s~d---------g~v~vwd~~~~~~~~~~~~~~~~v~ 281 (473)
..+. -.+.|++-|. +|+.+ .-| .++++.++....+.-.+. ..++|.
T Consensus 217 --------------------kadk-vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVh 274 (566)
T KOG2315|consen 217 --------------------KADK-VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVH 274 (566)
T ss_pred --------------------ccce-eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCce
Confidence 1111 2356766554 22222 222 358888887444443333 578999
Q ss_pred EEEEcCCC---EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC---CcEEEEecCC
Q 012007 282 SVVAGFDS---LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD---GLVNFWECEK 355 (473)
Q Consensus 282 ~l~~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---g~i~iwd~~~ 355 (473)
++.|++++ -++-|-.-..+.|+|++. ...+.-.+++=+++-|+|.|++|+.++.+ |.|.|||..+
T Consensus 275 dv~W~~s~~EF~VvyGfMPAkvtifnlr~---------~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 275 DVTWSPSGREFAVVYGFMPAKVTIFNLRG---------KPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred EEEECCCCCEEEEEEecccceEEEEcCCC---------CEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence 99999998 344566678899999872 12223345667889999999999887664 7899999998
Q ss_pred cccccceeecCcceEEEEEecCCEEEEEeC------CCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCC
Q 012007 356 HLSHGGVLRGHKMAVLCLAAAGNLVFSGSA------DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDR 422 (473)
Q Consensus 356 ~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 422 (473)
......+......+..|+|||.+|+++.. |+.++||++.. ..+....- ......+.|-|-.
T Consensus 346 -~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG----~~l~~~~f-~sEL~qv~W~P~~ 412 (566)
T KOG2315|consen 346 -RKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG----SLLHEKMF-KSELLQVEWRPFN 412 (566)
T ss_pred -hhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC----ceeehhhh-hHhHhheeeeecC
Confidence 44555666777888999999999999875 68899999876 22322211 1146677777543
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.8e-08 Score=93.70 Aligned_cols=307 Identities=15% Similarity=0.138 Sum_probs=183.1
Q ss_pred cceeeeeeecccEEEEEec--------------CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCC---C-
Q 012007 114 GLIGSIVRKEGHIYSLAAS--------------GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGD---S- 173 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~--------------g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~---~- 173 (473)
+++.++..|+..|+.+.|. .-+||++...|.|.+||.. ..+..+..|..+|..++|-+. .
T Consensus 46 q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Sr 125 (1062)
T KOG1912|consen 46 QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSR 125 (1062)
T ss_pred hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcch
Confidence 5678888899999988752 1268888889999999965 445567778899999999653 3
Q ss_pred CEEEEEeCCCeEEEEeCCCCCeeeEEeeccc--------ccc-ceeEeecCCCcceE---------EEeecceeeEeecc
Q 012007 174 NKIFTGHQDGKIRIWKVSRKNASVHKRVGSL--------PTF-KDYVKSSVNPKNYV---------EVRRNRSVLKIRHY 235 (473)
Q Consensus 174 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 235 (473)
..|+.-.....|.+|+..+++.......... |.. ..+......+..+. ....+...+...|.
T Consensus 126 d~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~S 205 (1062)
T KOG1912|consen 126 DVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHS 205 (1062)
T ss_pred heeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCcc
Confidence 4677777788999999988875433222111 110 01111000000000 00000000111111
Q ss_pred C-------------------------CeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-
Q 012007 236 D-------------------------AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS- 289 (473)
Q Consensus 236 ~-------------------------~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~- 289 (473)
+ ....++|+|.-+.++-......+.++|++-..++.......+.+.-+.+-|+.
T Consensus 206 dl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~ 285 (1062)
T KOG1912|consen 206 DLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPR 285 (1062)
T ss_pred chhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCC
Confidence 1 01235667765555555667889999999888988888777777778887775
Q ss_pred --EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEE-----------EEccC-CCEEEEeCCCCcEEEEecCC
Q 012007 290 --LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTAL-----------AVNQE-SAVVYCGSSDGLVNFWECEK 355 (473)
Q Consensus 290 --~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l-----------~~~~~-~~~l~~~~~dg~i~iwd~~~ 355 (473)
.|+++-.||.+.+|-.+................-...+.++ +..|. ...++.--.+|.+.+|.+.+
T Consensus 286 rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~ 365 (1062)
T KOG1912|consen 286 RDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSN 365 (1062)
T ss_pred cceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhc
Confidence 79999999999999766422211110000001111222222 22232 23344444567788887763
Q ss_pred cccccc------------------------------eeecCcceEEEEE-------------ecC-------CEEEEEeC
Q 012007 356 HLSHGG------------------------------VLRGHKMAVLCLA-------------AAG-------NLVFSGSA 385 (473)
Q Consensus 356 ~~~~~~------------------------------~~~~~~~~v~~~~-------------~~~-------~~l~s~~~ 385 (473)
+..... ...+|.....+.. +-+ .++|.|..
T Consensus 366 ~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~ 445 (1062)
T KOG1912|consen 366 GRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTN 445 (1062)
T ss_pred CCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecC
Confidence 221110 0012333222221 111 37889999
Q ss_pred CCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 386 DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 386 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
.|+|.++|+.+ ....+.+..|++.|.++.|.....
T Consensus 446 sGTV~vvdvst---~~v~~~fsvht~~VkgleW~g~ss 480 (1062)
T KOG1912|consen 446 SGTVDVVDVST---NAVAASFSVHTSLVKGLEWLGNSS 480 (1062)
T ss_pred CceEEEEEecc---hhhhhhhcccccceeeeeecccee
Confidence 99999999998 466677788999999999988765
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.4e-07 Score=96.13 Aligned_cols=259 Identities=9% Similarity=0.045 Sum_probs=151.8
Q ss_pred EEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEE
Q 012007 165 KAIIISGD-SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL 243 (473)
Q Consensus 165 ~~l~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 243 (473)
..++++++ ++.+++-..++.|++||..... ............. .. ......-.....|++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~--------dG----------~~~~a~f~~P~GIav 631 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLR--------DG----------SFEDATFNRPQGLAY 631 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCC--------CC----------chhccccCCCcEEEE
Confidence 36788775 5566666677889999986432 2111100000000 00 000012334678999
Q ss_pred cCCCCEEEEEeC-CCCEEEEEcCCCeeeEEeecC-----------------CCceeEEEEcC-CC-EEEEEeCCCcEEEE
Q 012007 244 NAEQGLLYSGSW-DKTLKVWRISDCKCLESINAH-----------------DDAINSVVAGF-DS-LVFTGSADGTVKVW 303 (473)
Q Consensus 244 ~~~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~-----------------~~~v~~l~~~~-~~-~l~s~~~dg~i~vw 303 (473)
+++++.|+++.. .+.|+++|+.++.. .++.+. -..-..+++++ ++ ++++...++.|++|
T Consensus 632 d~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~ 710 (1057)
T PLN02919 632 NAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEY 710 (1057)
T ss_pred eCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEE
Confidence 998887777654 56799999877653 333110 11235788888 45 55667778999999
Q ss_pred eCcccCCCcce--eeeeeec------cCCccEEEEEEccCCCE-EEEeCCCCcEEEEecCCcccccc------------e
Q 012007 304 RRELQGKGTKH--CLAQVLL------KHENAVTALAVNQESAV-VYCGSSDGLVNFWECEKHLSHGG------------V 362 (473)
Q Consensus 304 d~~~~~~~~~~--~~~~~~~------~~~~~v~~l~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~------------~ 362 (473)
|...+...... -...... ..-.....|+++|++.. +++-..++.|++||+.++..... .
T Consensus 711 d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~ 790 (1057)
T PLN02919 711 NISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFK 790 (1057)
T ss_pred ECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCccccc
Confidence 98632110000 0000000 01134567999999884 45556678999999875431100 0
Q ss_pred e-----------ecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEE----------ecCCCCceeEEEEecC
Q 012007 363 L-----------RGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAV----------LTGHTGPVKCLAVEED 421 (473)
Q Consensus 363 ~-----------~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------~~~h~~~V~~l~~~~~ 421 (473)
+ ..|. .-.+++++|+++++-..++.|++||..++........ ..+.-.....|+++++
T Consensus 791 fG~~dG~g~~~~l~~P-~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~d 869 (1057)
T PLN02919 791 FGDHDGVGSEVLLQHP-LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGEN 869 (1057)
T ss_pred ccCCCCchhhhhccCC-ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCC
Confidence 0 0011 1245667788888888999999999987321111100 0112235678999999
Q ss_pred CCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 422 RDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
+. ++++-+.++.|++||+.++..
T Consensus 870 G~-------------lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 870 GR-------------LFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CC-------------EEEEECCCCEEEEEECCCCcc
Confidence 87 888888999999999987653
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-06 Score=80.75 Aligned_cols=242 Identities=10% Similarity=0.088 Sum_probs=140.0
Q ss_pred EEecCCEEEEeeC----------CCcEEEeeCC--ccccccccC-------cccEEEEEEeCCCCEEEEEe-C-CCeEEE
Q 012007 129 LAASGDLLYTGSD----------SKNIRVWKNL--KEFSGFKSN-------SGLVKAIIISGDSNKIFTGH-Q-DGKIRI 187 (473)
Q Consensus 129 ~~~~g~~l~tg~~----------dg~i~vwd~~--~~~~~~~~h-------~~~V~~l~~s~~~~~l~s~~-~-dg~i~v 187 (473)
+++||+.|+++.. +..|.|||.. +.+..+... ...-..++++|||++|+... . +..|-+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8999998777755 7899999976 333333321 22344789999999999776 3 689999
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE-eCCCCEEEEEcCC
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTLKVWRISD 266 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg~v~vwd~~~ 266 (473)
.|+.+++......+... ...+ -...-..+..+.|+.++... ..+|....=.
T Consensus 133 vD~~~~kvv~ei~vp~~---~~vy----------------------~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~--- 184 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDC---YHIF----------------------PTANDTFFMHCRDGSLAKVGYGTKGNPKIKP--- 184 (352)
T ss_pred EECCCCcEEEEEeCCCC---cEEE----------------------EecCCccEEEeecCceEEEEecCCCceEEee---
Confidence 99999987665543210 0000 00111111222333333222 1222211000
Q ss_pred CeeeEEeecCCCceeEE-EEcC-CC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeec-------cCCccEEEEEEccCC
Q 012007 267 CKCLESINAHDDAINSV-VAGF-DS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLL-------KHENAVTALAVNQES 336 (473)
Q Consensus 267 ~~~~~~~~~~~~~v~~l-~~~~-~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-------~~~~~v~~l~~~~~~ 336 (473)
...+.....++..- .+.+ ++ +++.... |.|.+.|+........ .....+. -....+.-+++++++
T Consensus 185 ---~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~-~~~~~~~~~~~~~~wrP~g~q~ia~~~dg 259 (352)
T TIGR02658 185 ---TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL-PAIEAFTEAEKADGWRPGGWQQVAYHRAR 259 (352)
T ss_pred ---eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceec-ceeeeccccccccccCCCcceeEEEcCCC
Confidence 00111100000000 2233 55 4444444 9999999653321111 1111111 123444559999999
Q ss_pred CEEEEeC----------CCCcEEEEecCCcccccceeecCcceEEEEEecCC-EEEEEe-CCCcEEEEecCCCCceeEEE
Q 012007 337 AVVYCGS----------SDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGN-LVFSGS-ADRNICLWRREESGAHSCLA 404 (473)
Q Consensus 337 ~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~~ 404 (473)
+.+++.. ..+.|.++|..+.+.......++...-..+++|++ +|++.. .++.|.++|..+ .+.+.
T Consensus 260 ~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t---~k~i~ 336 (352)
T TIGR02658 260 DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET---GKELS 336 (352)
T ss_pred CEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC---CeEEe
Confidence 9888743 12479999999988877777788888889999999 777666 578899999988 45555
Q ss_pred Ee
Q 012007 405 VL 406 (473)
Q Consensus 405 ~~ 406 (473)
.+
T Consensus 337 ~i 338 (352)
T TIGR02658 337 SV 338 (352)
T ss_pred ee
Confidence 54
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.6e-07 Score=94.59 Aligned_cols=253 Identities=9% Similarity=0.036 Sum_probs=147.8
Q ss_pred EEEec-CCEEEEeeCCCcEEEeeCCcccccccc---------------CcccEEEEEEeCCCCEEEEEeC-CCeEEEEeC
Q 012007 128 SLAAS-GDLLYTGSDSKNIRVWKNLKEFSGFKS---------------NSGLVKAIIISGDSNKIFTGHQ-DGKIRIWKV 190 (473)
Q Consensus 128 ~~~~~-g~~l~tg~~dg~i~vwd~~~~~~~~~~---------------h~~~V~~l~~s~~~~~l~s~~~-dg~i~vwd~ 190 (473)
++..+ +.++++-..++.|++||.........+ +-.....|++.++++.|+.+.. .+.|+++|.
T Consensus 574 avd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~ 653 (1057)
T PLN02919 574 AIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDF 653 (1057)
T ss_pred EEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEec
Confidence 34433 556677677888999986533221111 1123578999998887766654 467999998
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCee
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
.++........+.... ...... .... ..-..-..++++| ++.++++.+.++.|++||..++..
T Consensus 654 ~~~~V~tlag~G~~g~-------~~~gg~------~~~~---~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v 717 (1057)
T PLN02919 654 VNETVRTLAGNGTKGS-------DYQGGK------KGTS---QVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT 717 (1057)
T ss_pred CCCEEEEEeccCcccC-------CCCCCh------hhhH---hhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE
Confidence 7764322111100000 000000 0000 0012335789999 555666667788999999987654
Q ss_pred eEEeec---------------CCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcce-------eeeeeec----
Q 012007 270 LESINA---------------HDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKH-------CLAQVLL---- 321 (473)
Q Consensus 270 ~~~~~~---------------~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~-------~~~~~~~---- 321 (473)
.. +.+ .-.....|++++++ ++++-+.++.|++||+..+...... .....+.
T Consensus 718 ~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG 796 (1057)
T PLN02919 718 RV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG 796 (1057)
T ss_pred EE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence 32 111 01234568898886 5556667899999998743210000 0000000
Q ss_pred ----cCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeec--------------CcceEEEEEecCCEEEEE
Q 012007 322 ----KHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRG--------------HKMAVLCLAAAGNLVFSG 383 (473)
Q Consensus 322 ----~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~l~s~ 383 (473)
..-.....++++++|.++++-..++.|++||..++......-.+ ....-.+++++|+++++-
T Consensus 797 ~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD 876 (1057)
T PLN02919 797 VGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD 876 (1057)
T ss_pred chhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEE
Confidence 01112468899999998888899999999998764322100000 011235667789998988
Q ss_pred eCCCcEEEEecCCC
Q 012007 384 SADRNICLWRREES 397 (473)
Q Consensus 384 ~~dg~i~iwd~~~~ 397 (473)
+.++.|++||+.++
T Consensus 877 t~Nn~Irvid~~~~ 890 (1057)
T PLN02919 877 TNNSLIRYLDLNKG 890 (1057)
T ss_pred CCCCEEEEEECCCC
Confidence 89999999999874
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.4e-07 Score=88.54 Aligned_cols=201 Identities=12% Similarity=0.015 Sum_probs=113.7
Q ss_pred CCeeEEEEcCCCCE---EEEEeCCC--CEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEe-CCC----cEEEEe
Q 012007 236 DAVSCLSLNAEQGL---LYSGSWDK--TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGS-ADG----TVKVWR 304 (473)
Q Consensus 236 ~~v~~l~~~~~~~~---l~s~s~dg--~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~-~dg----~i~vwd 304 (473)
..+..-.|+|||+. +++...+| .|.+.++..++.... ....+......|+||| .|+..+ .+| .+.+|+
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~ 263 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFS 263 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEECCCCCcceeEEEee
Confidence 34556689999874 23444444 478888877754332 2234445567899998 554433 333 334466
Q ss_pred CcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC-CCCcEEEE--ecCCcccccceeecC--cceEEEEEecCCE
Q 012007 305 RELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS-SDGLVNFW--ECEKHLSHGGVLRGH--KMAVLCLAAAGNL 379 (473)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iw--d~~~~~~~~~~~~~~--~~~v~~~~~~~~~ 379 (473)
+..+.. .................+|+|||+.|+..+ .+|...+| ++.........+..+ ......++|||++
T Consensus 264 ~~~g~~---g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~ 340 (428)
T PRK01029 264 LETGAI---GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKK 340 (428)
T ss_pred cccCCC---CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCE
Confidence 543211 111122222223446789999999776654 56655555 443211111122222 2234678899998
Q ss_pred EEEEeCC---CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeC--CCcEEEEEcCC
Q 012007 380 VFSGSAD---RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSL--DKSVKVWRVSE 454 (473)
Q Consensus 380 l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~--Dg~v~iW~i~~ 454 (473)
|+..+.+ ..|.+||+.++.. ..+......+....|+||++. +++++.. +..|.+|++..
T Consensus 341 Laf~~~~~g~~~I~v~dl~~g~~----~~Lt~~~~~~~~p~wSpDG~~------------L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 341 IAFCSVIKGVRQICVYDLATGRD----YQLTTSPENKESPSWAIDSLH------------LVYSAGNSNESELYLISLIT 404 (428)
T ss_pred EEEEEcCCCCcEEEEEECCCCCe----EEccCCCCCccceEECCCCCE------------EEEEECCCCCceEEEEECCC
Confidence 8876543 3699999987432 222222345678999999883 3444443 34688888876
Q ss_pred CC
Q 012007 455 HA 456 (473)
Q Consensus 455 ~~ 456 (473)
++
T Consensus 405 g~ 406 (428)
T PRK01029 405 KK 406 (428)
T ss_pred CC
Confidence 54
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.7e-07 Score=95.51 Aligned_cols=242 Identities=14% Similarity=0.135 Sum_probs=154.7
Q ss_pred CcccEEEEEEeCCCCEEEEEeCCCeEEEE----eCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeecc
Q 012007 160 NSGLVKAIIISGDSNKIFTGHQDGKIRIW----KVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY 235 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~~dg~i~vw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (473)
..+.|.++.+-++...|+.+..+|.|.+. +........... -.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~---------------------------------vd 120 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS---------------------------------VD 120 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE---------------------------------Ec
Confidence 45789999999999999999999999999 544443322221 55
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCc-----eeEEEEcCCCEEEEEeCCCcEE--EEeCccc
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDA-----INSVVAGFDSLVFTGSADGTVK--VWRRELQ 308 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-----v~~l~~~~~~~l~s~~~dg~i~--vwd~~~~ 308 (473)
..|.+++|+||+..|+..+.+++|.+.+ ++.+.+.+...+... -..+-|.....-+=|+..+... +-|..
T Consensus 121 ~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~-- 197 (928)
T PF04762_consen 121 SGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT-- 197 (928)
T ss_pred CcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC--
Confidence 7899999999999999999999998886 567776665543221 1222232222111111111100 00000
Q ss_pred CCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC---C---CcEEEEecCCcccccceeecCcceEEEEEecCCEEEE
Q 012007 309 GKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS---D---GLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFS 382 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s 382 (473)
....-...+. ....-..|+|-.||.++|+.+. . ..|+||+-+............-....+|.|.|++||+
T Consensus 198 ---~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~ 273 (928)
T PF04762_consen 198 ---VPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIAS 273 (928)
T ss_pred ---CCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEE
Confidence 0000011122 4556678999999999998774 2 4799999774222212222222345678889999999
Q ss_pred EeC---CCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 383 GSA---DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 383 ~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
... ...|.+|..+.-..++..-.+......|..|+|++++. +||..-.|. |.+|...+.
T Consensus 274 ~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~-------------iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 274 SQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSE-------------ILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred EEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCC-------------EEEEEecCC-ceEEEeeCC
Confidence 864 45688898776433333333334567899999999998 888877665 999988764
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.4e-08 Score=89.50 Aligned_cols=247 Identities=14% Similarity=0.114 Sum_probs=167.7
Q ss_pred eecccEEEEEec-CCEEEEeeCCCcEEEeeCC-----ccccccccCcccEEEEEEeCCCCEEEEEeC-CCeEEEEeCCCC
Q 012007 121 RKEGHIYSLAAS-GDLLYTGSDSKNIRVWKNL-----KEFSGFKSNSGLVKAIIISGDSNKIFTGHQ-DGKIRIWKVSRK 193 (473)
Q Consensus 121 ~h~~~V~~~~~~-g~~l~tg~~dg~i~vwd~~-----~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-dg~i~vwd~~~~ 193 (473)
-|.+.|+.+.+. .+++.+++.||.++.|.-. +-+..+..|-+.|.+++.+-++.++.|.+. |..++++|+++-
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 367777777776 7899999999999999744 345567789999999999999999999777 999999999987
Q ss_pred CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC--eeeE
Q 012007 194 NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC--KCLE 271 (473)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~--~~~~ 271 (473)
....-.....+|.......+ ..+.+. ..-++.-.++.+.++|-... +...
T Consensus 87 DminmiKL~~lPg~a~wv~s--------------------kGd~~s--------~IAVs~~~sg~i~VvD~~~d~~q~~~ 138 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTS--------------------KGDKIS--------LIAVSLFKSGKIFVVDGFGDFCQDGY 138 (558)
T ss_pred chhhhcccccCCCceEEecC--------------------CCCeee--------eEEeecccCCCcEEECCcCCcCccce
Confidence 76554444444322111100 111111 12223346788999997643 3344
Q ss_pred EeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcc-cCCC--------cceeeeeeeccCCccEEEEEEccCCCEEEE
Q 012007 272 SINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRREL-QGKG--------TKHCLAQVLLKHENAVTALAVNQESAVVYC 341 (473)
Q Consensus 272 ~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~-~~~~--------~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~ 341 (473)
.-+.|..+|.++.+.+.+ .+++....|.|..|.... .... ........+.......+++.|+|++..+.+
T Consensus 139 fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qist 218 (558)
T KOG0882|consen 139 FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQIST 218 (558)
T ss_pred ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccc
Confidence 445799999999998887 777888899999998762 0000 001112223345567789999999999999
Q ss_pred eCCCCcEEEEecCCcccccce-------------------------------eecCcc---eEEEEEecCCEEEEEeCCC
Q 012007 342 GSSDGLVNFWECEKHLSHGGV-------------------------------LRGHKM---AVLCLAAAGNLVFSGSADR 387 (473)
Q Consensus 342 ~~~dg~i~iwd~~~~~~~~~~-------------------------------~~~~~~---~v~~~~~~~~~l~s~~~dg 387 (473)
-..|..|++++.+++...... +..|.. .-.++.-.|++|+-|+-=|
T Consensus 219 l~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g 298 (558)
T KOG0882|consen 219 LNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG 298 (558)
T ss_pred cCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee
Confidence 999999999998764321110 111221 1234445589999888665
Q ss_pred cEEEEecCC
Q 012007 388 NICLWRREE 396 (473)
Q Consensus 388 ~i~iwd~~~ 396 (473)
|++.++.+
T Consensus 299 -ikvin~~t 306 (558)
T KOG0882|consen 299 -IKVINLDT 306 (558)
T ss_pred -EEEEEeec
Confidence 88998887
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.6e-07 Score=79.57 Aligned_cols=192 Identities=11% Similarity=0.024 Sum_probs=128.3
Q ss_pred CCEEEEeeCCCcEEEeeCCcc---ccccccCcccEEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccc
Q 012007 133 GDLLYTGSDSKNIRVWKNLKE---FSGFKSNSGLVKAIIISG-DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFK 208 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~~~---~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 208 (473)
-.+||.||.-|...+|..... ......|...|+-+.=.- ..-.+..++.|.++++.+++.+......
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~--------- 154 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV--------- 154 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee---------
Confidence 348999999999999975521 222223333332221111 1235667788989999888765432222
Q ss_pred eeEeecCCCcceEEEeecceeeEeeccCC--eeEEEEcCCCCEEEEEeCCCCEEEEEcCCC-eeeEE--eecCCCceeEE
Q 012007 209 DYVKSSVNPKNYVEVRRNRSVLKIRHYDA--VSCLSLNAEQGLLYSGSWDKTLKVWRISDC-KCLES--INAHDDAINSV 283 (473)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~-~~~~~--~~~~~~~v~~l 283 (473)
|... +.++.++++++++++.+....|..|.+... +.+.. .....+.-.+.
T Consensus 155 -------------------------h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~ 209 (344)
T KOG4532|consen 155 -------------------------HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN 209 (344)
T ss_pred -------------------------eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence 3333 778999999999999999999999998643 32222 22334445667
Q ss_pred EEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC--CEEEEeCCCCcEEEEecCCcccc
Q 012007 284 VAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES--AVVYCGSSDGLVNFWECEKHLSH 359 (473)
Q Consensus 284 ~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~ 359 (473)
.|+... .++++..||++.|||++...... .........|.+++..+.|++.| .+|+..-.-+.+.+.|+++....
T Consensus 210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm-~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 210 SFSENDLQFAVVFQDGTCAIYDVRNMATPM-AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred eeccCcceEEEEecCCcEEEEEecccccch-hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence 777665 89999999999999998644321 12223445689999999999866 35555555678999999876544
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.3e-09 Score=99.58 Aligned_cols=224 Identities=16% Similarity=0.158 Sum_probs=151.6
Q ss_pred EEEeeCCCcEEEeeCCcc-----ccccccCcccEEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccce
Q 012007 136 LYTGSDSKNIRVWKNLKE-----FSGFKSNSGLVKAIIISGDS-NKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKD 209 (473)
Q Consensus 136 l~tg~~dg~i~vwd~~~~-----~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 209 (473)
+++-+ ...-.+|++.+. .-.+.+|..+|+.+-|.++. ..|++++.|-.+..||+.+.........
T Consensus 85 iVsts-~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~-------- 155 (1081)
T KOG0309|consen 85 IVSTS-NQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS-------- 155 (1081)
T ss_pred EEecC-cchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee--------
Confidence 44333 345568875522 22457899999999998865 4789999999999999987653221111
Q ss_pred eEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC-eeeEEeecCCCceeEEEEcCC
Q 012007 210 YVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC-KCLESINAHDDAINSVVAGFD 288 (473)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~-~~~~~~~~~~~~v~~l~~~~~ 288 (473)
.-......++|+-....+.+.+....|.+||++.| .++..+++|...|+.+.|..-
T Consensus 156 -----------------------~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~ 212 (1081)
T KOG0309|consen 156 -----------------------SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRF 212 (1081)
T ss_pred -----------------------cccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhh
Confidence 12334567888875555666666788999999865 567889999999999988654
Q ss_pred --CEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEE--eCCCCcEEEE---------ecCC
Q 012007 289 --SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC--GSSDGLVNFW---------ECEK 355 (473)
Q Consensus 289 --~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~--~~~dg~i~iw---------d~~~ 355 (473)
+.+.+++.||+|+.||...... ..........+|..-.+.|-|.-.+. .-.+..+.++ +..+
T Consensus 213 ~~s~~~s~~~d~tvkfw~y~kSt~-----e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~ 287 (1081)
T KOG0309|consen 213 KYSEIMSSSNDGTVKFWDYSKSTT-----ESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFD 287 (1081)
T ss_pred hhhhhcccCCCCceeeeccccccc-----ccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhcccc
Confidence 3899999999999999873322 12223334556666666664432222 1112234443 3334
Q ss_pred cccccceeecCcceEEEEEec------------CCEEEEEeCCCcEEEEecCC
Q 012007 356 HLSHGGVLRGHKMAVLCLAAA------------GNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 356 ~~~~~~~~~~~~~~v~~~~~~------------~~~l~s~~~dg~i~iwd~~~ 396 (473)
.......+.||...|..|-|- .-.|++-+.|..+++|-+.+
T Consensus 288 ~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 288 LNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 556667888999988776541 23699999999999998864
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.2e-09 Score=88.75 Aligned_cols=243 Identities=15% Similarity=0.228 Sum_probs=147.5
Q ss_pred CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 160 NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
....|+++.|...|.||++|...|.|.++.-+...-........+..... . ...+....-...|.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~-------E--------FDYLkSleieEKin 89 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHEL-------E--------FDYLKSLEIEEKIN 89 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhccccc-------c--------hhhhhhccHHHHhh
Confidence 34679999999999999999999999999765443111111000000000 0 00001112345677
Q ss_pred EEEEcCCC--CEEEEEeCCCCEEEEEcCCCe-------------------------------------ee-----EEe-e
Q 012007 240 CLSLNAEQ--GLLYSGSWDKTLKVWRISDCK-------------------------------------CL-----ESI-N 274 (473)
Q Consensus 240 ~l~~~~~~--~~l~s~s~dg~v~vwd~~~~~-------------------------------------~~-----~~~-~ 274 (473)
.|.|..++ ..++..+.|.+|++|.+.... .+ +.. .
T Consensus 90 ~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaN 169 (460)
T COG5170 90 AIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYAN 169 (460)
T ss_pred heeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccc
Confidence 88887643 356666779999999874320 00 001 3
Q ss_pred cCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCC-----ccEEEEEEccCC-CEEEEeCCCCcE
Q 012007 275 AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHE-----NAVTALAVNQES-AVVYCGSSDGLV 348 (473)
Q Consensus 275 ~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-----~~v~~l~~~~~~-~~l~~~~~dg~i 348 (473)
+|.-.++++.+..+...+..+.|-.|.+|+++..+. ... +....+|. .-|++..|+|.. ..+.-.++.|.|
T Consensus 170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~--sFn-IVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~I 246 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDG--SFN-IVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEI 246 (460)
T ss_pred cceeEeeeeeecCchheeeeccceeeeeccccccCC--ceE-EEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcE
Confidence 566677888888887666677889999999874331 111 12223332 357888899854 556667778999
Q ss_pred EEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCccc
Q 012007 349 NFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEY 428 (473)
Q Consensus 349 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~ 428 (473)
++-|++..... |..-+++...-. ..-..-+.+-...|..+.|+++++
T Consensus 247 kl~DlRq~alc--------------------------dn~~klfe~~~D--~v~~~ff~eivsSISD~kFs~ngr----- 293 (460)
T COG5170 247 KLNDLRQSALC--------------------------DNSKKLFELTID--GVDVDFFEEIVSSISDFKFSDNGR----- 293 (460)
T ss_pred Eehhhhhhhhc--------------------------cCchhhhhhccC--cccchhHHHHhhhhcceEEcCCCc-----
Confidence 99998753221 111122221110 011222334456789999999998
Q ss_pred ccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCC
Q 012007 429 HQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGL 462 (473)
Q Consensus 429 ~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~ 462 (473)
++++-+. -+|+|||+...+.+++.+
T Consensus 294 --------yIlsRdy-ltvkiwDvnm~k~pikTi 318 (460)
T COG5170 294 --------YILSRDY-LTVKIWDVNMAKNPIKTI 318 (460)
T ss_pred --------EEEEecc-ceEEEEecccccCCceee
Confidence 7777665 589999999888777655
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.8e-08 Score=88.07 Aligned_cols=152 Identities=14% Similarity=0.161 Sum_probs=107.3
Q ss_pred eeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee----eEEeecCCCceeEEEEcCC-CEEEEE---eCCCcEEEEeCcccC
Q 012007 238 VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC----LESINAHDDAINSVVAGFD-SLVFTG---SADGTVKVWRRELQG 309 (473)
Q Consensus 238 v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~----~~~~~~~~~~v~~l~~~~~-~~l~s~---~~dg~i~vwd~~~~~ 309 (473)
...+..++.+.+||++..+....++++..... +...... ..-+++.+..+ ..+..+ +....+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~-~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-- 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP-KRPTAISFIREDTSVLVADKAGDVYSFDILSADS-- 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc-cCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence 34456778899999998888877777754332 2222211 12223333222 233333 3334455554431
Q ss_pred CCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEec-CCEEEEEeCCCc
Q 012007 310 KGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA-GNLVFSGSADRN 388 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~ 388 (473)
.....+.+|-+.++.++++||+++|+++..|..|++-.............||..-|..++.. +..|++|+.|++
T Consensus 142 -----~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~t 216 (390)
T KOG3914|consen 142 -----GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKT 216 (390)
T ss_pred -----cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCc
Confidence 12345678999999999999999999999999999988887777777888999999888854 667899999999
Q ss_pred EEEEecCCC
Q 012007 389 ICLWRREES 397 (473)
Q Consensus 389 i~iwd~~~~ 397 (473)
|++||+.++
T Consensus 217 lr~Wd~~sg 225 (390)
T KOG3914|consen 217 LRLWDITSG 225 (390)
T ss_pred EEEEecccC
Confidence 999999985
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.1e-08 Score=83.53 Aligned_cols=156 Identities=18% Similarity=0.241 Sum_probs=99.3
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee-eEEeec-CCCceeEEEEcCCCEEEEEeC------CCcEEEEeC
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC-LESINA-HDDAINSVVAGFDSLVFTGSA------DGTVKVWRR 305 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~-~~~~~~-~~~~v~~l~~~~~~~l~s~~~------dg~i~vwd~ 305 (473)
|.++-.+-+.+-.++.+++++.||.+.+++.+.-.. .+.+.. |.+. .+.++...+.++.... -+..+.|++
T Consensus 88 ~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~ 166 (319)
T KOG4714|consen 88 NSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTL 166 (319)
T ss_pred cCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecc
Confidence 444333334444567899999999999999765211 111111 1111 1112222222232222 344566666
Q ss_pred cccCCCcceeeeeeeccCCccEEEEEEccC-CCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe---cCCEEE
Q 012007 306 ELQGKGTKHCLAQVLLKHENAVTALAVNQE-SAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA---AGNLVF 381 (473)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~ 381 (473)
+. ...+.... .....|++++-+|. ...+++|+.||.+-+||.+....+...+..|+.++..+.+ ++..|+
T Consensus 167 ~p-----~~t~~~~~-~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lf 240 (319)
T KOG4714|consen 167 DP-----IKTLIPSK-KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLF 240 (319)
T ss_pred cc-----cccccccc-cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhee
Confidence 52 11111111 12234999999994 5778889999999999999887777888899999877765 378999
Q ss_pred EEeCCCcEEEEecCC
Q 012007 382 SGSADRNICLWRREE 396 (473)
Q Consensus 382 s~~~dg~i~iwd~~~ 396 (473)
++++||.+..||..+
T Consensus 241 t~sedGslw~wdas~ 255 (319)
T KOG4714|consen 241 TCSEDGSLWHWDAST 255 (319)
T ss_pred EecCCCcEEEEcCCC
Confidence 999999999999874
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.86 E-value=9e-07 Score=78.94 Aligned_cols=224 Identities=13% Similarity=0.071 Sum_probs=131.6
Q ss_pred CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEE
Q 012007 182 DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKV 261 (473)
Q Consensus 182 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~v 261 (473)
+|.|..||..+++......... -.....+. ..+++..+++++.++.|..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~------------------------------~~~~~~~~-~~~~~~~v~~~~~~~~l~~ 50 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP------------------------------GIGGPVAT-AVPDGGRVYVASGDGNLYA 50 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS------------------------------SCSSEEET-EEEETTEEEEEETTSEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCC------------------------------CCCCccce-EEEeCCEEEEEcCCCEEEE
Confidence 6889999998887766554321 01111111 2235677888889999999
Q ss_pred EEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceee-eeeeccCCccEEEEEEccCCCEEE
Q 012007 262 WRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCL-AQVLLKHENAVTALAVNQESAVVY 340 (473)
Q Consensus 262 wd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~ 340 (473)
||..+|+.+..+.... .+.......++.++.++.++.|..+|..++.. .... ........ ..........+..++
T Consensus 51 ~d~~tG~~~W~~~~~~-~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~--~W~~~~~~~~~~~-~~~~~~~~~~~~~~~ 126 (238)
T PF13360_consen 51 LDAKTGKVLWRFDLPG-PISGAPVVDGGRVYVGTSDGSLYALDAKTGKV--LWSIYLTSSPPAG-VRSSSSPAVDGDRLY 126 (238)
T ss_dssp EETTTSEEEEEEECSS-CGGSGEEEETTEEEEEETTSEEEEEETTTSCE--EEEEEE-SSCTCS-TB--SEEEEETTEEE
T ss_pred EECCCCCEEEEeeccc-cccceeeecccccccccceeeeEecccCCcce--eeeeccccccccc-cccccCceEecCEEE
Confidence 9999999988887532 22222234456777777888999999775442 1111 10001111 112222222377888
Q ss_pred EeCCCCcEEEEecCCcccccceeecCcc----------eEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCC
Q 012007 341 CGSSDGLVNFWECEKHLSHGGVLRGHKM----------AVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHT 410 (473)
Q Consensus 341 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~ 410 (473)
++..++.|..+|.+++...-........ ....+...+..++.++.++.+.-+|+.++ +.+.... .
T Consensus 127 ~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg---~~~w~~~--~ 201 (238)
T PF13360_consen 127 VGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATG---EKLWSKP--I 201 (238)
T ss_dssp EEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTT---EEEEEEC--S
T ss_pred EEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCC---CEEEEec--C
Confidence 8888999999999887654322221111 01223334447777887886444499884 3232222 2
Q ss_pred CceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCc
Q 012007 411 GPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDL 459 (473)
Q Consensus 411 ~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~ 459 (473)
..+..+ ....+. .|+.++.|+.|..||+.+++..+
T Consensus 202 ~~~~~~-~~~~~~-------------~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 202 SGIYSL-PSVDGG-------------TLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp S-ECEC-EECCCT-------------EEEEEETTTEEEEEETTTTEEEE
T ss_pred CCccCC-ceeeCC-------------EEEEEeCCCEEEEEECCCCCEEe
Confidence 223332 234444 67777799999999999987544
|
... |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.2e-06 Score=75.22 Aligned_cols=199 Identities=11% Similarity=0.157 Sum_probs=134.0
Q ss_pred EEEEEecCCEEEEeeC-CCcEEEeeCCc-----cccccccCccc----------EEEEEEeCCCCEEEEEeC-CCeEEEE
Q 012007 126 IYSLAASGDLLYTGSD-SKNIRVWKNLK-----EFSGFKSNSGL----------VKAIIISGDSNKIFTGHQ-DGKIRIW 188 (473)
Q Consensus 126 V~~~~~~g~~l~tg~~-dg~i~vwd~~~-----~~~~~~~h~~~----------V~~l~~s~~~~~l~s~~~-dg~i~vw 188 (473)
-.+++.+|++|+++.. -|.|.++.+.. .......|.+. +....+.|++++|+++.. --.|.+|
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 3466777999999876 57899986532 12223334444 889999999999998754 2379999
Q ss_pred eCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCC
Q 012007 189 KVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDC 267 (473)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~ 267 (473)
+++.+.......... .-...-..|.|+|++++.+... -+++|.+|.....
T Consensus 173 ~~~dg~L~~~~~~~v-----------------------------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 173 DLDDGKLTPADPAEV-----------------------------KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred EcccCcccccccccc-----------------------------CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 999776543332211 1344567799999999988876 4789999998763
Q ss_pred -eeeEEeec---------CCCceeEEEEcCCCEEEEEeCC--CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC
Q 012007 268 -KCLESINA---------HDDAINSVVAGFDSLVFTGSAD--GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE 335 (473)
Q Consensus 268 -~~~~~~~~---------~~~~v~~l~~~~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 335 (473)
..+..++. ......+|.++++|.++-++.- ..|.+|.+...+ ....+......+......+.|++.
T Consensus 224 ~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~--g~L~~~~~~~teg~~PR~F~i~~~ 301 (346)
T COG2706 224 VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG--GKLELVGITPTEGQFPRDFNINPS 301 (346)
T ss_pred CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC--CEEEEEEEeccCCcCCccceeCCC
Confidence 22333321 2345667888999955555543 367777765332 334444455555566789999999
Q ss_pred CCEEEEeCCCC-cEEEEecCC
Q 012007 336 SAVVYCGSSDG-LVNFWECEK 355 (473)
Q Consensus 336 ~~~l~~~~~dg-~i~iwd~~~ 355 (473)
+++|+++..++ .|.+|....
T Consensus 302 g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 302 GRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred CCEEEEEccCCCcEEEEEEcC
Confidence 99999887754 688887653
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.1e-08 Score=87.27 Aligned_cols=159 Identities=13% Similarity=0.217 Sum_probs=107.7
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCe-eeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEE
Q 012007 164 VKAIIISGDSNKIFTGHQDGKIRIWKVSRKNA-SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS 242 (473)
Q Consensus 164 V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 242 (473)
+..+..++.+++||.+..+....++++..... ........ -...-+.+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~------------------------------v~~~~~ai~ 114 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC------------------------------VPKRPTAIS 114 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee------------------------------cccCcceee
Confidence 34445677788888888887777777665442 11111100 122233444
Q ss_pred EcCCCCEEEEEe---CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeee
Q 012007 243 LNAEQGLLYSGS---WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQ 318 (473)
Q Consensus 243 ~~~~~~~l~s~s---~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 318 (473)
|..+......+. ....+.+|....+.+ ..+-+|-..+..+++++|+ .|+++..|..|++-... .......
T Consensus 115 ~~~~~~sv~v~dkagD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~yp-----a~f~Ies 188 (390)
T KOG3914|consen 115 FIREDTSVLVADKAGDVYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYP-----ATFVIES 188 (390)
T ss_pred eeeccceEEEEeecCCceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecC-----cccchhh
Confidence 444444444444 444455555554443 3445799999999999998 89999999999998765 3444455
Q ss_pred eeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccc
Q 012007 319 VLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSH 359 (473)
Q Consensus 319 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 359 (473)
...+|..-|..++.-++. .|++++.|++|++||+.++..+
T Consensus 189 fclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 189 FCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred hccccHhheeeeeeccCc-eeeecCCCCcEEEEecccCCcc
Confidence 677899999999998764 5899999999999999987665
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.7e-06 Score=72.63 Aligned_cols=210 Identities=15% Similarity=0.150 Sum_probs=128.6
Q ss_pred EEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEE
Q 012007 165 KAIIISG-DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL 243 (473)
Q Consensus 165 ~~l~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 243 (473)
.+++|.+ ++.++++--..+.|..|+..++..... .......+++
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~-----------------------------------~~~~~~G~~~ 47 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI-----------------------------------DLPGPNGMAF 47 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE-----------------------------------ESSSEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE-----------------------------------ecCCCceEEE
Confidence 3678887 666666766789999999987754321 1122566777
Q ss_pred c-CCCCEEEEEeCCCCEEEEEcCCCeeeEEeec-----CCCceeEEEEcCCCEEEEEeCC---------CcEEEEeCccc
Q 012007 244 N-AEQGLLYSGSWDKTLKVWRISDCKCLESINA-----HDDAINSVVAGFDSLVFTGSAD---------GTVKVWRRELQ 308 (473)
Q Consensus 244 ~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-----~~~~v~~l~~~~~~~l~s~~~d---------g~i~vwd~~~~ 308 (473)
. ++ ..|+.+..+ .+.++|..+++....... .....+.+++.++|.|+.+... |.|..++..
T Consensus 48 ~~~~-g~l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-- 123 (246)
T PF08450_consen 48 DRPD-GRLYVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-- 123 (246)
T ss_dssp ECTT-SEEEEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--
T ss_pred EccC-CEEEEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--
Confidence 7 55 556666654 456669988865444332 3457888999999955554332 345555543
Q ss_pred CCCcceeeeeeeccCCccEEEEEEccCCCEEE-EeCCCCcEEEEecCCccc-c--ccee---ecCcceE--EEEEecCCE
Q 012007 309 GKGTKHCLAQVLLKHENAVTALAVNQESAVVY-CGSSDGLVNFWECEKHLS-H--GGVL---RGHKMAV--LCLAAAGNL 379 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~~~dg~i~iwd~~~~~~-~--~~~~---~~~~~~v--~~~~~~~~~ 379 (473)
. . .......-...+.|+|+|+++.|+ +-+..+.|..|++..... . ...+ ....... +++..+|++
T Consensus 124 ~---~---~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l 197 (246)
T PF08450_consen 124 G---K---VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNL 197 (246)
T ss_dssp S---E---EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-E
T ss_pred C---e---EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCE
Confidence 1 1 122222345578999999998765 567788899999863222 1 1111 1111112 555566888
Q ss_pred EEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEe-cCCC
Q 012007 380 VFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVE-EDRD 423 (473)
Q Consensus 380 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~~ 423 (473)
.++....+.|.+++.+. +.+..+.-....+++++|. ++..
T Consensus 198 ~va~~~~~~I~~~~p~G----~~~~~i~~p~~~~t~~~fgg~~~~ 238 (246)
T PF08450_consen 198 WVADWGGGRIVVFDPDG----KLLREIELPVPRPTNCAFGGPDGK 238 (246)
T ss_dssp EEEEETTTEEEEEETTS----CEEEEEE-SSSSEEEEEEESTTSS
T ss_pred EEEEcCCCEEEEECCCc----cEEEEEcCCCCCEEEEEEECCCCC
Confidence 88887889999999874 3444444334579999995 4433
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-06 Score=81.91 Aligned_cols=234 Identities=12% Similarity=0.097 Sum_probs=141.1
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEE
Q 012007 164 VKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL 243 (473)
Q Consensus 164 V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 243 (473)
=+-+.|||-|.||+|-..-| |.+|--.+-.....+. | ..|.-+.|
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~---------------------------------H-p~Vq~idf 257 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY---------------------------------H-PGVQFIDF 257 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc---------------------------------C-CCceeeec
Confidence 46789999999999998887 7899654443322221 4 35788999
Q ss_pred cCCCCEEEEEeC-----------CCCEEEEEcCCCeeeEEeec--CCCceeE-EEEcCCCEEEEEeCCCcEEEEeCcccC
Q 012007 244 NAEQGLLYSGSW-----------DKTLKVWRISDCKCLESINA--HDDAINS-VVAGFDSLVFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 244 ~~~~~~l~s~s~-----------dg~v~vwd~~~~~~~~~~~~--~~~~v~~-l~~~~~~~l~s~~~dg~i~vwd~~~~~ 309 (473)
+|..+||++=+. ...++|||+.+|...+.+.. ....++- ..|+.++..++.-....|.||+....
T Consensus 258 SP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf- 336 (698)
T KOG2314|consen 258 SPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSF- 336 (698)
T ss_pred CCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCce-
Confidence 999999998652 25699999999999988876 3333443 46888885555555578888876421
Q ss_pred CCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC--------------------------------------------
Q 012007 310 KGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD-------------------------------------------- 345 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-------------------------------------------- 345 (473)
.+.....-.-..|....|+|.+.+||--...
T Consensus 337 -----~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvk 411 (698)
T KOG2314|consen 337 -----MLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVK 411 (698)
T ss_pred -----eeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEE
Confidence 1111111112334445555554444322110
Q ss_pred -------------CcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeC---CCcEEEEecC-CCCceeEEEEe
Q 012007 346 -------------GLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSA---DRNICLWRRE-ESGAHSCLAVL 406 (473)
Q Consensus 346 -------------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~---dg~i~iwd~~-~~~~~~~~~~~ 406 (473)
..+.|+.++....+.... .-...+..+++ .|+.+++-+. ..++.+|.++ +.....++..+
T Consensus 412 vdR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~ 490 (698)
T KOG2314|consen 412 VDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL 490 (698)
T ss_pred EEeeccccccceEeeEEEEEeeccCCCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh
Confidence 012222222211111111 12234455554 4666655432 3578999888 44445556555
Q ss_pred cCCCCceeEEEEecCCCCCcccccCCCccEEEEEe---eCCCcEEEEEcCC
Q 012007 407 TGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG---SLDKSVKVWRVSE 454 (473)
Q Consensus 407 ~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~---s~Dg~v~iW~i~~ 454 (473)
.. ...+.+.|+|.|+ +++.+ |..|.+.++|+.-
T Consensus 491 dk--~~~N~vfwsPkG~-------------fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 491 DK--KFANTVFWSPKGR-------------FVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred cc--cccceEEEcCCCc-------------EEEEEEecccccceEEEecch
Confidence 54 4578999999998 45443 4578899999874
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.8e-07 Score=88.30 Aligned_cols=231 Identities=11% Similarity=0.064 Sum_probs=153.1
Q ss_pred CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCC------------CEEEEEeCCCeEEEEeCCCCCeeeE
Q 012007 133 GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDS------------NKIFTGHQDGKIRIWKVSRKNASVH 198 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~------------~~l~s~~~dg~i~vwd~~~~~~~~~ 198 (473)
+.++|-|+. ..|.|-|.. +.+..+..|...|+.+.|.|.. -+||++...|.|.+||.........
T Consensus 26 ~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~ 104 (1062)
T KOG1912|consen 26 SGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW 104 (1062)
T ss_pred cceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh
Confidence 446666665 477788854 6788888999999999998731 2577788889999999987654333
Q ss_pred EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC---CC-CEEEEEeCCCCEEEEEcCCCeeeEEee
Q 012007 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA---EQ-GLLYSGSWDKTLKVWRISDCKCLESIN 274 (473)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~ 274 (473)
.. .|.+.+..++|-+ +. ..|++-....+|.+|+..+|+.+....
T Consensus 105 l~--------------------------------~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ 152 (1062)
T KOG1912|consen 105 LS--------------------------------HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD 152 (1062)
T ss_pred hc--------------------------------CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc
Confidence 22 2778888899876 33 466666667899999999999998887
Q ss_pred cCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCC-CcceeeeeeeccCCc------------c-------------
Q 012007 275 AHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGK-GTKHCLAQVLLKHEN------------A------------- 326 (473)
Q Consensus 275 ~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~------------~------------- 326 (473)
.......|+.+.|-. .+..-+..|.+.+.+.-...+ .......+....|.. .
T Consensus 153 ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity 232 (1062)
T KOG1912|consen 153 YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITY 232 (1062)
T ss_pred cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHH
Confidence 777778888877654 444555566666665432111 111111222222211 0
Q ss_pred EEEEEEccCCCEEEEeCCCCcEEEEecCCcccccce-eecCcceEEEEEec--CCEEEEEeCCCcEEEEecCC
Q 012007 327 VTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV-LRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 327 v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~ 396 (473)
...++|+|.-+.++.......+.++|++-......+ +.........+-|+ ...|++...||.+.+|-.+.
T Consensus 233 ~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 233 CAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred HHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 123567887665555666778999998754333222 22233455666666 56899999999999998764
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.1e-07 Score=77.23 Aligned_cols=189 Identities=11% Similarity=-0.001 Sum_probs=130.7
Q ss_pred EEEEeeCCCcEEEeeCCccccccccCccc--EEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEE-eeccccccceeE
Q 012007 135 LLYTGSDSKNIRVWKNLKEFSGFKSNSGL--VKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHK-RVGSLPTFKDYV 211 (473)
Q Consensus 135 ~l~tg~~dg~i~vwd~~~~~~~~~~h~~~--V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~ 211 (473)
-+..++.|.++++.++......+..|... +..+++++|++++++.+....|..|.+.....-... ...
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a--------- 200 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEA--------- 200 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEec---------
Confidence 46677888899998877555555556554 889999999999999999999999998765432222 111
Q ss_pred eecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeE-----EeecCCCceeEEEEc
Q 012007 212 KSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE-----SINAHDDAINSVVAG 286 (473)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~-----~~~~~~~~v~~l~~~ 286 (473)
...+.-.+..|+.....+|++..||++.|||++...... +-..|.+++..+.|+
T Consensus 201 ---------------------~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fs 259 (344)
T KOG4532|consen 201 ---------------------PTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFS 259 (344)
T ss_pred ---------------------ccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEec
Confidence 144555688899999999999999999999998754332 224588999999999
Q ss_pred CCC---EEEEEeCCCcEEEEeCcccCCCccee-eeeeeccCCcc-EEEEEEccCCCEEEEeCCCCcEEEEecC
Q 012007 287 FDS---LVFTGSADGTVKVWRRELQGKGTKHC-LAQVLLKHENA-VTALAVNQESAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 287 ~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~-v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 354 (473)
+.| +|+..-.-+.+.+.|++....-.... .......|... |..-.|+.++.-+.+...+ .+.-|++.
T Consensus 260 l~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 260 LYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNIL 331 (344)
T ss_pred CCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch-hhheeecc
Confidence 876 67777778899999998643211110 01122334433 7777787777666555443 34445443
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.8e-06 Score=78.66 Aligned_cols=244 Identities=18% Similarity=0.180 Sum_probs=156.4
Q ss_pred cccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccC
Q 012007 157 FKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYD 236 (473)
Q Consensus 157 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (473)
+....-++..++|||.|.+|++....| |.+|.-.......... | .
T Consensus 28 ~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~---------------------------------~-~ 72 (561)
T COG5354 28 FESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR---------------------------------H-P 72 (561)
T ss_pred ccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee---------------------------------c-C
Confidence 333567899999999999999987764 8899887765333332 3 4
Q ss_pred CeeEEEEcCCCCEEEEEeCC---------------CCEEEEEcCCCeeeEEeecCCCc--ee-EEEEcCCCEEEEEeCCC
Q 012007 237 AVSCLSLNAEQGLLYSGSWD---------------KTLKVWRISDCKCLESINAHDDA--IN-SVVAGFDSLVFTGSADG 298 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~d---------------g~v~vwd~~~~~~~~~~~~~~~~--v~-~l~~~~~~~l~s~~~dg 298 (473)
.|..+.|+|.+++|.+=+.. ..+.+||+.++..+..+.....+ .+ -+.|+-+..+++--...
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~ 152 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGS 152 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccC
Confidence 58889999999999886543 34999999999999998866555 44 56677666333222456
Q ss_pred cEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC--CEEEE-----eCCCCcEEEEecCCccccc-ceeecCcceE
Q 012007 299 TVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES--AVVYC-----GSSDGLVNFWECEKHLSHG-GVLRGHKMAV 370 (473)
Q Consensus 299 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~-----~~~dg~i~iwd~~~~~~~~-~~~~~~~~~v 370 (473)
.+.|+++. ... . ......+. ...|....|+|.+ ..|+. ...++.+++|.+....... ..+..-...-
T Consensus 153 sl~i~e~t-~n~-~-~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q 227 (561)
T COG5354 153 SLYIHEIT-DNI-E-EHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQ 227 (561)
T ss_pred eEEEEecC-Ccc-c-cCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccE
Confidence 78999862 111 1 11111111 3568888999864 34443 4567889999887433221 1121122222
Q ss_pred EEEEecCCEEEEEe-----------CCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEE
Q 012007 371 LCLAAAGNLVFSGS-----------ADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVY 439 (473)
Q Consensus 371 ~~~~~~~~~l~s~~-----------~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~ 439 (473)
+.+...|++|+.-- ....++|+++.. .-+.....-.++|...+|.|.+.. +.++
T Consensus 228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e----~~i~V~~~~~~pVhdf~W~p~S~~-----------F~vi 292 (561)
T COG5354 228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE----RSIPVEKDLKDPVHDFTWEPLSSR-----------FAVI 292 (561)
T ss_pred EEEecCCceEEEEEEEeeecccceeccceEEEEeecc----cccceeccccccceeeeecccCCc-----------eeEE
Confidence 34444566655321 134678888874 222233356789999999999873 3566
Q ss_pred EeeCCCcEEEEEcCCC
Q 012007 440 SGSLDKSVKVWRVSEH 455 (473)
Q Consensus 440 s~s~Dg~v~iW~i~~~ 455 (473)
+|-.+-.+.++++...
T Consensus 293 ~g~~pa~~s~~~lr~N 308 (561)
T COG5354 293 SGYMPASVSVFDLRGN 308 (561)
T ss_pred ecccccceeecccccc
Confidence 6667888888888754
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.6e-06 Score=71.54 Aligned_cols=225 Identities=17% Similarity=0.157 Sum_probs=120.8
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCCccc-------cccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEe
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNLKEF-------SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKR 200 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~~~~-------~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 200 (473)
.++.+|++||.-- |..|.|-...... ...+...-.=..++|+||+.+||.+...|+|+++|+.....-....
T Consensus 4 ~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p 82 (282)
T PF15492_consen 4 ALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPP 82 (282)
T ss_pred eecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCc
Confidence 4556677777654 4566666433222 2223333456889999999999999999999999998654322211
Q ss_pred eccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC------CCEEEEEeCCCCEEEEEcCC-----Cee
Q 012007 201 VGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE------QGLLYSGSWDKTLKVWRISD-----CKC 269 (473)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~------~~~l~s~s~dg~v~vwd~~~-----~~~ 269 (473)
....+. .-..+|..|.|.+. ...|++-..+|.++-|-+.. .+.
T Consensus 83 ~~~~~~--------------------------d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e 136 (282)
T PF15492_consen 83 AMSFPG--------------------------DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQE 136 (282)
T ss_pred ccccCC--------------------------ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCccee
Confidence 110000 13345666666542 22566777788888777532 233
Q ss_pred eEEeec---CCCceeEEEEcCCC-EEEEEeC-CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCE--EEEe
Q 012007 270 LESINA---HDDAINSVVAGFDS-LVFTGSA-DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAV--VYCG 342 (473)
Q Consensus 270 ~~~~~~---~~~~v~~l~~~~~~-~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~--l~~~ 342 (473)
.+++.. +...|.++.++|.. +|++|+. ...-..+ ......+++-..-.+..+ .+..
T Consensus 137 ~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s-----------------~a~~~GLtaWRiL~~~Pyyk~v~~ 199 (282)
T PF15492_consen 137 NHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMS-----------------KASSCGLTAWRILSDSPYYKQVTS 199 (282)
T ss_pred eEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccc-----------------cccccCceEEEEcCCCCcEEEccc
Confidence 444432 46689999999986 4444443 3210000 011112222222111111 0111
Q ss_pred CCCCc------EEEEecCCccccc-ceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCC
Q 012007 343 SSDGL------VNFWECEKHLSHG-GVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 343 ~~dg~------i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
..|+. -.+|.+-+..... ..........++++|||.+||+...+|.|.+|++.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 200 SEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred cCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 11111 1122211100000 011122334578899999999999999999999987
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.1e-06 Score=80.71 Aligned_cols=261 Identities=10% Similarity=0.051 Sum_probs=145.6
Q ss_pred cCCEEEEeeCCCcEEEeeCCc--cccccccCcccEEE-EEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccc
Q 012007 132 SGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKA-IIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFK 208 (473)
Q Consensus 132 ~g~~l~tg~~dg~i~vwd~~~--~~~~~~~h~~~V~~-l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 208 (473)
++..++.++.+|.+..+|... .+-..... +.+.+ .... +..++.+..+|.|..+|..+++..-....... ..
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~- 193 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVA-GEALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVP-SL- 193 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCC-CceecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCC-cc-
Confidence 455677777888888888542 22222221 12221 1222 33677778889999999998886554432210 00
Q ss_pred eeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCC-------cee
Q 012007 209 DYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDD-------AIN 281 (473)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~-------~v~ 281 (473)
...+...++ . .+..++.++.++.+..+|..+|+.+........ ...
T Consensus 194 ---------------------~~~~~~sP~----v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~ 246 (394)
T PRK11138 194 ---------------------TLRGESAPA----T--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLV 246 (394)
T ss_pred ---------------------cccCCCCCE----E--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhccc
Confidence 000001111 1 124567777889999999999887665432110 001
Q ss_pred EEEEc---CCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccc
Q 012007 282 SVVAG---FDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLS 358 (473)
Q Consensus 282 ~l~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 358 (473)
.+... .++.++.++.+|.+..+|...++. .... .. . ....+.. .+..|+.++.+|.+..+|..++..
T Consensus 247 ~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~--~W~~--~~-~---~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~ 316 (394)
T PRK11138 247 DVDTTPVVVGGVVYALAYNGNLVALDLRSGQI--VWKR--EY-G---SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVE 316 (394)
T ss_pred ccCCCcEEECCEEEEEEcCCeEEEEECCCCCE--EEee--cC-C---CccCcEE--ECCEEEEEcCCCeEEEEECCCCcE
Confidence 11111 256788888899999999875432 1110 01 1 1111222 456777888899999999987654
Q ss_pred ccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeE-EEEecCCCCCcccccCCCccEE
Q 012007 359 HGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKC-LAVEEDRDHDHEYHQKGDQRWT 437 (473)
Q Consensus 359 ~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~~~~~~~~~~~~~~ 437 (473)
.-................+.+|+.++.||.|.+.|..++ +.+....-....+.+ ..+. ++ .
T Consensus 317 ~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG---~~~~~~~~~~~~~~s~P~~~-~~--------------~ 378 (394)
T PRK11138 317 LWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDG---RFVAQQKVDSSGFLSEPVVA-DD--------------K 378 (394)
T ss_pred EEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCC---CEEEEEEcCCCcceeCCEEE-CC--------------E
Confidence 321111001111122234778889999999999999884 444444322222322 2222 22 5
Q ss_pred EEEeeCCCcEEEEEc
Q 012007 438 VYSGSLDKSVKVWRV 452 (473)
Q Consensus 438 l~s~s~Dg~v~iW~i 452 (473)
|+.++.||.|..++.
T Consensus 379 l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 379 LLIQARDGTVYAITR 393 (394)
T ss_pred EEEEeCCceEEEEeC
Confidence 888899999988875
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.7e-06 Score=75.96 Aligned_cols=211 Identities=10% Similarity=0.072 Sum_probs=135.9
Q ss_pred eCCCcEEEeeCCccccccccCcc--cEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecccc---c--------
Q 012007 140 SDSKNIRVWKNLKEFSGFKSNSG--LVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLP---T-------- 206 (473)
Q Consensus 140 ~~dg~i~vwd~~~~~~~~~~h~~--~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~---~-------- 206 (473)
.-||.=.+|.+.-.-..++.|+. .-.+=..+.||+.++- +..|.|.++|.++........-.... .
T Consensus 243 D~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~ps 321 (668)
T COG4946 243 DHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPS 321 (668)
T ss_pred cccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHH
Confidence 34555555543322223333443 1223334568877765 45678999998877654322210111 0
Q ss_pred ---------cceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCC-CEEEEEcCCCeeeEEeecC
Q 012007 207 ---------FKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDK-TLKVWRISDCKCLESINAH 276 (473)
Q Consensus 207 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg-~v~vwd~~~~~~~~~~~~~ 276 (473)
..+++......+.++........+.++|...|.-..+.-+++-++.|..|| .+-|+|..+++. ..+...
T Consensus 322 kyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~ 400 (668)
T COG4946 322 KYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKD 400 (668)
T ss_pred HhhhhhccCCCcEEEEEecCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCC
Confidence 011112222222222223333455667888899888888888999999999 899999987764 445556
Q ss_pred CCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC----cEEEE
Q 012007 277 DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG----LVNFW 351 (473)
Q Consensus 277 ~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg----~i~iw 351 (473)
-+.|.++..+++| .++++.....|.+.|++++. ....-....+-|+.+.|+|+++++|-+--+| .|+++
T Consensus 401 lg~I~av~vs~dGK~~vvaNdr~el~vididngn------v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Ikly 474 (668)
T COG4946 401 LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN------VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLY 474 (668)
T ss_pred ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC------eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEE
Confidence 7889999999998 67788888889999987543 1222334456799999999999999887776 48899
Q ss_pred ecCCccc
Q 012007 352 ECEKHLS 358 (473)
Q Consensus 352 d~~~~~~ 358 (473)
|+..++.
T Consensus 475 dm~~~Ki 481 (668)
T COG4946 475 DMDGGKI 481 (668)
T ss_pred ecCCCeE
Confidence 9887543
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.8e-06 Score=81.47 Aligned_cols=231 Identities=13% Similarity=0.078 Sum_probs=136.2
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEE
Q 012007 173 SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYS 252 (473)
Q Consensus 173 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s 252 (473)
+..++.++.+|.|..+|..+++.......... .. .... .++..+++
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~-----------------------------~~---~~p~--v~~~~v~v 110 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDER-----------------------------LS---GGVG--ADGGLVFV 110 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCC-----------------------------cc---cceE--EcCCEEEE
Confidence 55888889999999999988876554443210 00 1111 24678888
Q ss_pred EeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEE
Q 012007 253 GSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAV 332 (473)
Q Consensus 253 ~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 332 (473)
++.++.|..+|..+|+.+....... .+.+.....++.++.++.+|.|..||.+.++..-.............. .....
T Consensus 111 ~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~-~sp~~ 188 (377)
T TIGR03300 111 GTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGS-ASPVI 188 (377)
T ss_pred EcCCCEEEEEECCCCcEeeeeccCc-eeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCC-CCCEE
Confidence 9999999999999999887765433 222211123567888888999999998754321110000000000000 01111
Q ss_pred ccCCCEEEEeCCCCcEEEEecCCcccccceeecCcc---------eE-EEEEecCCEEEEEeCCCcEEEEecCCCCceeE
Q 012007 333 NQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKM---------AV-LCLAAAGNLVFSGSADRNICLWRREESGAHSC 402 (473)
Q Consensus 333 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---------~v-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 402 (473)
. +..++.+..+|.+..+|.+++...-........ .+ ......+..+++++.+|.+..||..++ +.
T Consensus 189 ~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG---~~ 263 (377)
T TIGR03300 189 A--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG---RV 263 (377)
T ss_pred E--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC---cE
Confidence 1 246778888899999998876543211110000 00 111224678888889999999999874 33
Q ss_pred EEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccC
Q 012007 403 LAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKG 461 (473)
Q Consensus 403 ~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~ 461 (473)
+..... ........ .+. .++.++.||.|..+|..+++..++.
T Consensus 264 ~W~~~~--~~~~~p~~--~~~-------------~vyv~~~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 264 LWKRDA--SSYQGPAV--DDN-------------RLYVTDADGVVVALDRRSGSELWKN 305 (377)
T ss_pred EEeecc--CCccCceE--eCC-------------EEEEECCCCeEEEEECCCCcEEEcc
Confidence 333221 11122222 222 5777788999999999888765543
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.4e-08 Score=87.43 Aligned_cols=147 Identities=16% Similarity=0.255 Sum_probs=111.4
Q ss_pred CCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEe
Q 012007 133 GDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVK 212 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 212 (473)
|-- ++.+.+-.|-+-|+..........++.|.++.|...+++++.|+.+|.|.+.|+..+..-.
T Consensus 225 gyh-fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~--------------- 288 (425)
T KOG2695|consen 225 GYH-FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGN--------------- 288 (425)
T ss_pred eee-ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCC---------------
Confidence 434 4444456777778776665555577889999999989999999999999999998663211
Q ss_pred ecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCee---eEEeecCCCceeEEEE--c
Q 012007 213 SSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKC---LESINAHDDAINSVVA--G 286 (473)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~---~~~~~~~~~~v~~l~~--~ 286 (473)
......+-|.+.|+++..-. ++.+|++.+.+|+|++||++.-++ +..+.+|...-.-+-+ .
T Consensus 289 -------------~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~ 355 (425)
T KOG2695|consen 289 -------------GWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVK 355 (425)
T ss_pred -------------CcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccc
Confidence 11223334999999998877 788999999999999999988777 8888888654433332 2
Q ss_pred C-CCEEEEEeCCCcEEEEeCccc
Q 012007 287 F-DSLVFTGSADGTVKVWRRELQ 308 (473)
Q Consensus 287 ~-~~~l~s~~~dg~i~vwd~~~~ 308 (473)
+ ++.+++++.|...+||.++.+
T Consensus 356 ~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 356 EEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred cccceEEEccCeeEEEEEecccC
Confidence 3 358999999999999999743
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=7e-06 Score=78.98 Aligned_cols=190 Identities=6% Similarity=-0.033 Sum_probs=111.4
Q ss_pred cEEEEEEeCCCCE-EEEEeCC---CeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCe
Q 012007 163 LVKAIIISGDSNK-IFTGHQD---GKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAV 238 (473)
Q Consensus 163 ~V~~l~~s~~~~~-l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 238 (473)
.+..-.|+|||+. ++..+.+ ..|.++|+.+++...... ..+..
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~---------------------------------~~g~~ 235 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS---------------------------------SQGML 235 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec---------------------------------CCCcE
Confidence 6788999999985 5544433 468889988775433221 23345
Q ss_pred eEEEEcCCCCEEEEE-eCC--CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCC--cEEEEeCcccCCC
Q 012007 239 SCLSLNAEQGLLYSG-SWD--KTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADG--TVKVWRRELQGKG 311 (473)
Q Consensus 239 ~~l~~~~~~~~l~s~-s~d--g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg--~i~vwd~~~~~~~ 311 (473)
....|+|||+.|+.. +.+ ..|.++|+.+++.. .+..+........|+|++ ++++....+ .|.+.|+..+.
T Consensus 236 ~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~-- 312 (419)
T PRK04043 236 VVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS-- 312 (419)
T ss_pred EeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC--
Confidence 567799999876654 333 46888888777643 343333333455799998 344444445 45556664321
Q ss_pred cceeeeeeeccCCccEEEEEEccCCCEEEEeCCC---------CcEEEEecCCcccccceeecCcceEEEEEecCCEEEE
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD---------GLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFS 382 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s 382 (473)
...+ ...+. ....|+|+|+.|+..... ..|.+.|+.++... ....+.......++|||++|+.
T Consensus 313 -~~rl--t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~~~~~p~~SPDG~~I~f 384 (419)
T PRK04043 313 -VEQV--VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTANGVNQFPRFSSDGGSIMF 384 (419)
T ss_pred -eEeC--ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCCCCcCCeEECCCCCEEEE
Confidence 1111 11111 124899999988766543 26788888765332 1211222334678999997776
Q ss_pred EeCC-C--cEEEEecCC
Q 012007 383 GSAD-R--NICLWRREE 396 (473)
Q Consensus 383 ~~~d-g--~i~iwd~~~ 396 (473)
...+ + .+.+.++..
T Consensus 385 ~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 385 IKYLGNQSALGIIRLNY 401 (419)
T ss_pred EEccCCcEEEEEEecCC
Confidence 6543 2 355556554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.6e-06 Score=83.74 Aligned_cols=223 Identities=13% Similarity=0.177 Sum_probs=144.9
Q ss_pred cEEEEEecCCEEEEeeCCCcEEEeeCC-ccccccccCccc-EEEEEEeCCCCEEEEEeCCCe-----EEEEeCCCCCeee
Q 012007 125 HIYSLAASGDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGL-VKAIIISGDSNKIFTGHQDGK-----IRIWKVSRKNASV 197 (473)
Q Consensus 125 ~V~~~~~~g~~l~tg~~dg~i~vwd~~-~~~~~~~~h~~~-V~~l~~s~~~~~l~s~~~dg~-----i~vwd~~~~~~~~ 197 (473)
.|.|++.++..+|.|+.+|.|.+.+.. +.+..++.+... |..+....+..+|++.+.|+. |+||+++..+...
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 788999999999999999999998865 444788888777 555555555578998887754 8999997653111
Q ss_pred E-EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC----CCeeeEE
Q 012007 198 H-KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS----DCKCLES 272 (473)
Q Consensus 198 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~----~~~~~~~ 272 (473)
. .... ..+......-....++.+++.+.+-+.+|+|-.+|.|..+.-. .+.....
T Consensus 107 sP~c~~--------------------~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~ 166 (933)
T KOG2114|consen 107 SPQCLY--------------------EHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDY 166 (933)
T ss_pred Ccceee--------------------eeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceee
Confidence 0 0000 0000000000145678999999999999999999999998531 1222222
Q ss_pred eecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEE
Q 012007 273 INAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFW 351 (473)
Q Consensus 273 ~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iw 351 (473)
......+|+.+.+..++ .++-...-..|.+|.+.. ..........|...+.|..+++....+++++. ..+.+|
T Consensus 167 ~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-----r~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY 240 (933)
T KOG2114|consen 167 SHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG-----RTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFY 240 (933)
T ss_pred eccCCCCceeeEEecCCceeEEEEecceeEEEEecC-----CCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEE
Confidence 22356799999998777 323333456789998861 11334557788889999999987664555543 469999
Q ss_pred ecCCcccccceeecCcceEEEE
Q 012007 352 ECEKHLSHGGVLRGHKMAVLCL 373 (473)
Q Consensus 352 d~~~~~~~~~~~~~~~~~v~~~ 373 (473)
|............+|.....++
T Consensus 241 ~sd~~~~cfaf~~g~kk~~~~~ 262 (933)
T KOG2114|consen 241 DSDGRGPCFAFEVGEKKEMLVF 262 (933)
T ss_pred cCCCcceeeeecCCCeEEEEEE
Confidence 9875433322222555444433
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.9e-08 Score=86.18 Aligned_cols=150 Identities=14% Similarity=0.159 Sum_probs=110.0
Q ss_pred CEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcc---cccceeec
Q 012007 289 SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHL---SHGGVLRG 365 (473)
Q Consensus 289 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~ 365 (473)
++-++.+.+-.|-+-|++++- .......+.|.++.|...+++++.|+.+|.|..+|++... .......-
T Consensus 225 gyhfs~G~sqqv~L~nvetg~--------~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly 296 (425)
T KOG2695|consen 225 GYHFSVGLSQQVLLTNVETGH--------QQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY 296 (425)
T ss_pred eeeecccccceeEEEEeeccc--------ccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE
Confidence 344777778888888887542 1122356789999999989999999999999999998641 11123335
Q ss_pred CcceEEEEE---ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEee
Q 012007 366 HKMAVLCLA---AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS 442 (473)
Q Consensus 366 ~~~~v~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s 442 (473)
|...++++. +++++|++.+.+|+|++||.+..+...-+..+.||...-.-+-++-+.+. -.++++|
T Consensus 297 h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~ee-----------g~I~s~G 365 (425)
T KOG2695|consen 297 HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEE-----------GSIFSVG 365 (425)
T ss_pred cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccccc-----------ceEEEcc
Confidence 777887764 67999999999999999999974444458889999654444444333221 0788899
Q ss_pred CCCcEEEEEcCCCCC
Q 012007 443 LDKSVKVWRVSEHAP 457 (473)
Q Consensus 443 ~Dg~v~iW~i~~~~~ 457 (473)
.|...+||.+..+..
T Consensus 366 dDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 366 DDCYTRIWSLDSGHL 380 (425)
T ss_pred CeeEEEEEecccCce
Confidence 999999999997653
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.2e-08 Score=59.22 Aligned_cols=38 Identities=29% Similarity=0.669 Sum_probs=36.1
Q ss_pred eEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 401 SCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 401 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
+++..+.+|.+.|++|+|+|++. +|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-------------~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-------------FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-------------EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-------------cceeeCCCCEEEEEC
Confidence 67889999999999999999988 899999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.2e-05 Score=68.54 Aligned_cols=210 Identities=10% Similarity=0.043 Sum_probs=127.1
Q ss_pred cCCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEe-CCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecccccccee
Q 012007 132 SGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIIS-GDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDY 210 (473)
Q Consensus 132 ~g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 210 (473)
++.++++--..+.|..|+............+ ...+++. +++ .|+.+..++ +.++|..+++...........
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~----- 82 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDGG----- 82 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESSS-EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETTC-----
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecCC-CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCCC-----
Confidence 4667777777889999987654443322223 6777777 565 555556554 555698887654433321000
Q ss_pred EeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC--------CCEEEEEcCCCeeeEEeecCCCceeE
Q 012007 211 VKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD--------KTLKVWRISDCKCLESINAHDDAINS 282 (473)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d--------g~v~vwd~~~~~~~~~~~~~~~~v~~ 282 (473)
......+.+++.++|++.++.... |.|..++.. ++..... ..-...+.
T Consensus 83 ----------------------~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNG 138 (246)
T PF08450_consen 83 ----------------------VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNG 138 (246)
T ss_dssp ----------------------SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEE
T ss_pred ----------------------cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccc
Confidence 023457889999999976665543 457777766 4543333 33556789
Q ss_pred EEEcCCC--EEEEEeCCCcEEEEeCcccCC-CcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccc
Q 012007 283 VVAGFDS--LVFTGSADGTVKVWRRELQGK-GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSH 359 (473)
Q Consensus 283 l~~~~~~--~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 359 (473)
|+|++++ ++++-+..+.|..+++..... .........+.......-.+++..+|++.++....+.|.++|.+. ...
T Consensus 139 i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G-~~~ 217 (246)
T PF08450_consen 139 IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG-KLL 217 (246)
T ss_dssp EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS-CEE
T ss_pred eEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc-cEE
Confidence 9999998 445667788888888864332 111122222223334578899999999888887889999999883 333
Q ss_pred cceeecCcceEEEEEe
Q 012007 360 GGVLRGHKMAVLCLAA 375 (473)
Q Consensus 360 ~~~~~~~~~~v~~~~~ 375 (473)
...... ...++++++
T Consensus 218 ~~i~~p-~~~~t~~~f 232 (246)
T PF08450_consen 218 REIELP-VPRPTNCAF 232 (246)
T ss_dssp EEEE-S-SSSEEEEEE
T ss_pred EEEcCC-CCCEEEEEE
Confidence 323323 225555555
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1e-05 Score=77.89 Aligned_cols=232 Identities=12% Similarity=0.076 Sum_probs=133.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEE
Q 012007 173 SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYS 252 (473)
Q Consensus 173 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s 252 (473)
+..++.++.+|.+..+|.++++..-........ ...++ . .+..++.
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~----------------------------~ssP~----v--~~~~v~v 165 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEA----------------------------LSRPV----V--SDGLVLV 165 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCce----------------------------ecCCE----E--ECCEEEE
Confidence 447788889999999999998865544321100 11111 1 2456777
Q ss_pred EeCCCCEEEEEcCCCeeeEEeecCCCce-----eEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCC-cc
Q 012007 253 GSWDKTLKVWRISDCKCLESINAHDDAI-----NSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHE-NA 326 (473)
Q Consensus 253 ~s~dg~v~vwd~~~~~~~~~~~~~~~~v-----~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~ 326 (473)
+..++.|..+|.++|+.+.........+ ..-.. .++.++.++.+|.+..+|...+...-..........+. ..
T Consensus 166 ~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v-~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~ 244 (394)
T PRK11138 166 HTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT-AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDR 244 (394)
T ss_pred ECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE-ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhc
Confidence 8889999999999999988776431111 01111 13467778889999888877543211100000000000 00
Q ss_pred EEEEEEcc--CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEE
Q 012007 327 VTALAVNQ--ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLA 404 (473)
Q Consensus 327 v~~l~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 404 (473)
...+..+| .+..+++++.+|.+..+|..++...-....+ ....+...+..|+.++.+|.+..+|..++ +.+.
T Consensus 245 ~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~---~~~~~~~~~~~vy~~~~~g~l~ald~~tG---~~~W 318 (394)
T PRK11138 245 LVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG---SVNDFAVDGGRIYLVDQNDRVYALDTRGG---VELW 318 (394)
T ss_pred ccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC---CccCcEEECCEEEEEcCCCeEEEEECCCC---cEEE
Confidence 01111122 2456777778899999999876543221111 11223456788888889999999999874 2222
Q ss_pred EecCC-CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 405 VLTGH-TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 405 ~~~~h-~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
....- .....+..+. ++ .|+.++.||.|.+.|..+++...+
T Consensus 319 ~~~~~~~~~~~sp~v~-~g--------------~l~v~~~~G~l~~ld~~tG~~~~~ 360 (394)
T PRK11138 319 SQSDLLHRLLTAPVLY-NG--------------YLVVGDSEGYLHWINREDGRFVAQ 360 (394)
T ss_pred cccccCCCcccCCEEE-CC--------------EEEEEeCCCEEEEEECCCCCEEEE
Confidence 21110 1112222222 22 678888999999999888765443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.4e-06 Score=85.99 Aligned_cols=240 Identities=14% Similarity=0.134 Sum_probs=148.3
Q ss_pred ccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE
Q 012007 162 GLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL 241 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 241 (473)
..|.++.|..+++-++.+..+|.|.+-|.++........ -...|.++
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~---------------------------------vd~GI~aa 115 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN---------------------------------VDNGISAA 115 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeee---------------------------------ccCceEEE
Confidence 689999999999999999999999999877765433222 56789999
Q ss_pred EEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecC-----CCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceee
Q 012007 242 SLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH-----DDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCL 316 (473)
Q Consensus 242 ~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-----~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 316 (473)
+|+||+..++..+.++++.+-+ .+..++.....+ .+....+-|.....-+-|+. |.....+... ....
T Consensus 116 swS~Dee~l~liT~~~tll~mT-~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~-gr~~~~~~~~-----~ek~ 188 (1265)
T KOG1920|consen 116 SWSPDEELLALITGRQTLLFMT-KDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSE-GRQAARQKIE-----KEKA 188 (1265)
T ss_pred eecCCCcEEEEEeCCcEEEEEe-ccccchhccccccccccccccceecccccceeeecch-hhhccccccc-----cccc
Confidence 9999999999999877776654 333433322211 11222223322222222221 1111111110 0000
Q ss_pred eeeeccCCccEEEEEEccCCCEEEEe-----CCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEe---CCCc
Q 012007 317 AQVLLKHENAVTALAVNQESAVVYCG-----SSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGS---ADRN 388 (473)
Q Consensus 317 ~~~~~~~~~~v~~l~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~---~dg~ 388 (473)
.......+.=+.|.|--||.++++. .....|++||.+.................++.|.|.++++-. .|+.
T Consensus 189 -~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~ 267 (1265)
T KOG1920|consen 189 -LEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD 267 (1265)
T ss_pred -ccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCc
Confidence 0000112233568999999999883 333789999987433333333344456677888899988854 4668
Q ss_pred EEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEE---eeCCCcEEEEEcCCC
Q 012007 389 ICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYS---GSLDKSVKVWRVSEH 455 (473)
Q Consensus 389 i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s---~s~Dg~v~iW~i~~~ 455 (473)
|.+|..+.-........+......|..++|+.++. +|+. ......|++|-+.+.
T Consensus 268 IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd-------------iLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 268 IVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD-------------ILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred EEEEecCCccccccccCCcccccchheeeecCCCC-------------ceeeeecccccceEEEEEecCe
Confidence 99999876433333333444445599999999988 6666 444445999998763
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.8e-05 Score=76.16 Aligned_cols=173 Identities=12% Similarity=0.059 Sum_probs=104.5
Q ss_pred CeeEEEEcCCCCE-EEEEeCC---CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCC--CcEEEEeCccc
Q 012007 237 AVSCLSLNAEQGL-LYSGSWD---KTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSAD--GTVKVWRRELQ 308 (473)
Q Consensus 237 ~v~~l~~~~~~~~-l~s~s~d---g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~d--g~i~vwd~~~~ 308 (473)
.+..-.|+|+|+. ++..+.+ ..|.++|+.+++...... ..+......|+|++ ++++.+.+ ..|.++|+..+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 5667899999984 6544433 469999998886654433 44556667899998 44444444 45666676432
Q ss_pred CCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC-CC--cEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeC
Q 012007 309 GKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-DG--LVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSA 385 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~ 385 (473)
. ...+..+........|+|||+.|+..+. .+ .|.++|+.++........+.. ...++++|++|+....
T Consensus 268 ~-------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 268 T-------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSR 338 (419)
T ss_pred c-------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEc
Confidence 1 1122222322345689999987766543 33 577778876543222222222 2478999998877664
Q ss_pred C---------CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCC
Q 012007 386 D---------RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDH 424 (473)
Q Consensus 386 d---------g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 424 (473)
. ..|.+.|+.++.. ..+... .......|+||++.
T Consensus 339 ~~~~~~~~~~~~I~v~d~~~g~~----~~LT~~-~~~~~p~~SPDG~~ 381 (419)
T PRK04043 339 ETNNEFGKNTFNLYLISTNSDYI----RRLTAN-GVNQFPRFSSDGGS 381 (419)
T ss_pred CCCcccCCCCcEEEEEECCCCCe----EECCCC-CCcCCeEECCCCCE
Confidence 3 2678888877432 223222 22345889999983
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-06 Score=85.66 Aligned_cols=188 Identities=13% Similarity=0.073 Sum_probs=126.1
Q ss_pred cccEEEEEecCCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeec
Q 012007 123 EGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 123 ~~~V~~~~~~g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 202 (473)
...+.|.+..+++|+-|+-+|.|++.+..........|+.. ..+|.++++|+.||+|.|-.+.+.+......
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-- 110 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNPKTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-- 110 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCccccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe--
Confidence 34566788889999999999999999876555555556554 5689999999999999999988776544333
Q ss_pred cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC-----CCEEEEEeCCCCEEEEEcCC--CeeeEEeec
Q 012007 203 SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE-----QGLLYSGSWDKTLKVWRISD--CKCLESINA 275 (473)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-----~~~l~s~s~dg~v~vwd~~~--~~~~~~~~~ 275 (473)
...++.+++++|+ .+.+++|+.-| +.++.-+= .+.-..+..
T Consensus 111 -------------------------------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~ 158 (846)
T KOG2066|consen 111 -------------------------------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE 158 (846)
T ss_pred -------------------------------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec
Confidence 5578999999997 56899999888 77765321 111114556
Q ss_pred CCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC
Q 012007 276 HDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 276 ~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 354 (473)
..++|.++.|. |.+++-..|--|++||+....................--..+.|.++.++ +.|- ..+|+|..++
T Consensus 159 ~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~L-VIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 159 GEGPIHSIKWR--GNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRL-VIGW-GDSVKICSIK 233 (846)
T ss_pred CccceEEEEec--CcEEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeE-EEec-CCeEEEEEEe
Confidence 67899999995 33444445556899998743321111111111111122345778776554 4443 3468888877
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-06 Score=85.10 Aligned_cols=184 Identities=12% Similarity=0.137 Sum_probs=129.0
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE
Q 012007 161 SGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 240 (473)
...+.|++++ +++|+-|..+|.|++.+..... ...+ .|...
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~---------------------------------~~s~~--- 79 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNF---------------------------------DHSSS--- 79 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc-cccc---------------------------------ccccc---
Confidence 4567788875 4599999999999999876442 1101 13332
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC------CEEEEEeCCCcEEEEeCcccCCCcce
Q 012007 241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD------SLVFTGSADGTVKVWRRELQGKGTKH 314 (473)
Q Consensus 241 l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~------~~l~s~~~dg~i~vwd~~~~~~~~~~ 314 (473)
..+|.++++|+.||+|.|-.+-+.+....+. ...++.+++++|+ +.+++|+.-| +.++..+.-+...
T Consensus 80 ---~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~-- 152 (846)
T KOG2066|consen 80 ---ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKD-- 152 (846)
T ss_pred ---ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcc--
Confidence 5689999999999999999998888777665 4468999999998 3899999999 8888765433211
Q ss_pred eeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceE-----EEEEec-CCEEEEEeCCCc
Q 012007 315 CLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAV-----LCLAAA-GNLVFSGSADRN 388 (473)
Q Consensus 315 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v-----~~~~~~-~~~l~s~~~dg~ 388 (473)
...+....++|.++.|. |+++|-++.+| |++||+........+...+...- ..+.|. ...|+.|= ..+
T Consensus 153 --~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW-~d~ 226 (846)
T KOG2066|consen 153 --SVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGW-GDS 226 (846)
T ss_pred --ceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEec-CCe
Confidence 11456678899999996 67888887766 99999987655544444442221 234444 44555554 447
Q ss_pred EEEEecCC
Q 012007 389 ICLWRREE 396 (473)
Q Consensus 389 i~iwd~~~ 396 (473)
|+|..++.
T Consensus 227 v~i~~I~~ 234 (846)
T KOG2066|consen 227 VKICSIKK 234 (846)
T ss_pred EEEEEEec
Confidence 88888873
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.8e-08 Score=58.98 Aligned_cols=37 Identities=32% Similarity=0.601 Sum_probs=33.6
Q ss_pred cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEe
Q 012007 153 EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 153 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd 189 (473)
.+..+.+|.+.|++|+|+|++++|++|+.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4567889999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.4e-05 Score=68.75 Aligned_cols=183 Identities=14% Similarity=0.133 Sum_probs=112.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEE
Q 012007 172 DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLY 251 (473)
Q Consensus 172 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 251 (473)
++.++++++.++.|..||..+++.......... .... . ...+..++
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-----------------------------~~~~---~--~~~~~~v~ 80 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-----------------------------ISGA---P--VVDGGRVY 80 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-----------------------------GGSG---E--EEETTEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-----------------------------ccce---e--eecccccc
Confidence 455888889999999999999987665554211 0111 1 12456677
Q ss_pred EEeCCCCEEEEEcCCCeeeEEe-ecCCC-----ceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCC-
Q 012007 252 SGSWDKTLKVWRISDCKCLESI-NAHDD-----AINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHE- 324 (473)
Q Consensus 252 s~s~dg~v~vwd~~~~~~~~~~-~~~~~-----~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~- 324 (473)
+++.++.|+.+|..+|+.+... ..... ......+. ++.++++..++.|..+|++++... .. .......
T Consensus 81 v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~--w~--~~~~~~~~ 155 (238)
T PF13360_consen 81 VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLL--WK--YPVGEPRG 155 (238)
T ss_dssp EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEE--EE--EESSTT-S
T ss_pred cccceeeeEecccCCcceeeeeccccccccccccccCceEe-cCEEEEEeccCcEEEEecCCCcEE--EE--eecCCCCC
Confidence 7778889999999999998884 33211 11222222 557888888999999998754321 11 1111101
Q ss_pred -c------cEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEE-EEecCCEEEEEeCCCcEEEEecCC
Q 012007 325 -N------AVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLC-LAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 325 -~------~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
. .+..-....++ .++.+..++.+..+|+.++...- ... ...... ...++..|++++.++.|..||+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EEC--SS-ECECEECCCTEEEEEETTTEEEEEETTT
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-Eec--CCCccCCceeeCCEEEEEeCCCEEEEEECCC
Confidence 1 11222222244 77777777764444998876442 221 222333 567788888888999999999998
Q ss_pred C
Q 012007 397 S 397 (473)
Q Consensus 397 ~ 397 (473)
+
T Consensus 232 G 232 (238)
T PF13360_consen 232 G 232 (238)
T ss_dssp T
T ss_pred C
Confidence 4
|
... |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.9e-05 Score=76.35 Aligned_cols=142 Identities=15% Similarity=0.188 Sum_probs=98.5
Q ss_pred EEEEEecCCEEEEeeCCCcEEEeeCC-ccccc--cccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeec
Q 012007 126 IYSLAASGDLLYTGSDSKNIRVWKNL-KEFSG--FKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 126 V~~~~~~g~~l~tg~~dg~i~vwd~~-~~~~~--~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 202 (473)
.+|++..+++++.|+.-|.+++|+-. ..... ..+-.+.+..+..+++..++|.|+..|.|.++-+..........+.
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t 117 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT 117 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence 45888889999999999999999743 22222 2234566777788888888999999999999988764332222221
Q ss_pred cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC----eeeEEeecCCC
Q 012007 203 SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC----KCLESINAHDD 278 (473)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~----~~~~~~~~~~~ 278 (473)
... ..|...|+|++|++++..|++|...|+|.+-.+... ...+.+-.-..
T Consensus 118 ~~d--------------------------~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds 171 (726)
T KOG3621|consen 118 PCD--------------------------KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDS 171 (726)
T ss_pred ccc--------------------------ccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCc
Confidence 110 028899999999999999999999999999888762 11222333455
Q ss_pred ceeEEEEcCCCEEEE
Q 012007 279 AINSVVAGFDSLVFT 293 (473)
Q Consensus 279 ~v~~l~~~~~~~l~s 293 (473)
.|..+.....-+|++
T Consensus 172 ~IVQlD~~q~~LLVS 186 (726)
T KOG3621|consen 172 EIVQLDYLQSYLLVS 186 (726)
T ss_pred ceEEeecccceehHh
Confidence 676666654434443
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.4e-06 Score=83.39 Aligned_cols=194 Identities=11% Similarity=0.154 Sum_probs=136.4
Q ss_pred CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCc
Q 012007 246 EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHEN 325 (473)
Q Consensus 246 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 325 (473)
++..++.|+....+..+|+++.+..+........|.-+.. .+..+++|...|+|.+-|.+ .......+..|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~-Nnr~lf~G~t~G~V~LrD~~------s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY-NNRNLFCGDTRGTVFLRDPN------SFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe-cCcEEEeecccceEEeecCC------cCceeeeeecccc
Confidence 4456778888888999999998887776655545555543 33489999999999999986 3445788899999
Q ss_pred cEEEEEEccCCCEEEEeCC---------CCcEEEEecCCcccccceeecCcceEEEEEec-CCEEEEEeCCCcEEEEecC
Q 012007 326 AVTALAVNQESAVVYCGSS---------DGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA-GNLVFSGSADRNICLWRRE 395 (473)
Q Consensus 326 ~v~~l~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~ 395 (473)
.|.++.. .|+.|++++. |..|++||++....+.-+...-......+.|. ...+++++..|...+-|..
T Consensus 219 siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 219 SISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTA 296 (1118)
T ss_pred ceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeecccc
Confidence 9987766 4778887764 56689999987544322211112233445554 5678888889999999843
Q ss_pred CCC-ceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCC
Q 012007 396 ESG-AHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGL 462 (473)
Q Consensus 396 ~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~ 462 (473)
+-. +..-+..+......+..+++++++. .++.|..+|.|.+|. ...++.....
T Consensus 297 ~lsNP~~~~~~v~p~~s~i~~fDiSsn~~-------------alafgd~~g~v~~wa-~~~~P~Fn~~ 350 (1118)
T KOG1275|consen 297 TLSNPPAGVKMVNPNGSGISAFDISSNGD-------------ALAFGDHEGHVNLWA-DRPQPQFNEY 350 (1118)
T ss_pred ccCCCccceeEEccCCCcceeEEecCCCc-------------eEEEecccCcEeeec-CCCCCccCCC
Confidence 311 1123333444455699999999998 899999999999999 5555554443
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.8e-06 Score=74.37 Aligned_cols=256 Identities=9% Similarity=0.116 Sum_probs=143.8
Q ss_pred EEEeeCC--ccccccccCcccEEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceE
Q 012007 145 IRVWKNL--KEFSGFKSNSGLVKAIIISGDSN-KIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYV 221 (473)
Q Consensus 145 i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (473)
|++.+.. +...-+..|...|..++|+|..+ ++..++.+.+|+|.|+++........
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~--------------------- 233 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI--------------------- 233 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee---------------------
Confidence 5555422 33445666888999999999877 78889999999999999876554443
Q ss_pred EEeecceeeEeeccCCeeEEEEcCC-CCEEEEEeCCCCEEEEEcCCCee-eEEeec--CCCceeEEEEcC-------CCE
Q 012007 222 EVRRNRSVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCKC-LESINA--HDDAINSVVAGF-------DSL 290 (473)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~v~vwd~~~~~~-~~~~~~--~~~~v~~l~~~~-------~~~ 290 (473)
-...+++++|.-+ .++++.|...|.|.|||++..+- +..+.+ ...+|..++.-+ .++
T Consensus 234 ------------a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~ggl 301 (463)
T KOG1645|consen 234 ------------AYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGL 301 (463)
T ss_pred ------------ccCCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccce
Confidence 3378999999874 56899999999999999986542 222221 223444443222 234
Q ss_pred EEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC-C------cEEE-EecCCcccccce
Q 012007 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD-G------LVNF-WECEKHLSHGGV 362 (473)
Q Consensus 291 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-g------~i~i-wd~~~~~~~~~~ 362 (473)
++.... .+..|+...... .... ....+..+.+.++.+++..+.++..... . .|-. -|...+...-..
T Consensus 302 Lv~~lt--~l~f~ei~~s~~--~~p~-vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~ 376 (463)
T KOG1645|consen 302 LVFALT--VLQFYEIVFSAE--CLPC-VLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGK 376 (463)
T ss_pred EEeeeh--hhhhhhhhcccc--CCCc-ccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeee
Confidence 443333 245666543211 1111 1112234566667777644444333221 1 0111 011111111111
Q ss_pred eecC---------cceEEEEEecCCEEE-EEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCC
Q 012007 363 LRGH---------KMAVLCLAAAGNLVF-SGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKG 432 (473)
Q Consensus 363 ~~~~---------~~~v~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~ 432 (473)
..++ .....--.++.++++ .|...+.+.+||..+ ...++.+.- ..+|.+++........
T Consensus 377 r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s---~evvQ~l~~-~epv~Dicp~~~n~~s------- 445 (463)
T KOG1645|consen 377 RRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS---FEVVQTLAL-SEPVLDICPNDTNGSS------- 445 (463)
T ss_pred cccccCCcccccccccceeccccccEEEEecCCcceeEEeccch---hheeeeccc-CcceeecceeecCCcc-------
Confidence 1111 111111123345444 455667899999998 566666654 4788888876653311
Q ss_pred CccEEEEEeeCCCcEEEEEcCC
Q 012007 433 DQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 433 ~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
+|+.-. |..++|++.+.
T Consensus 446 ----yLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 446 ----YLALLT-DDRVHIYKNES 462 (463)
T ss_pred ----hhhhee-cceEEEEecCC
Confidence 566665 55788887653
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-06 Score=79.37 Aligned_cols=224 Identities=15% Similarity=0.143 Sum_probs=151.6
Q ss_pred CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 160 NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
|...|+.+.-. -.+++.+++.||.++.|.-..-....... ....|...|.
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVK-----------------------------hFraHL~~I~ 57 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVK-----------------------------HFRAHLGVIL 57 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehh-----------------------------hhHHHHHHHH
Confidence 67777776654 34599999999999999765422111000 0112778889
Q ss_pred EEEEcCCCCEEEEEeC-CCCEEEEEcCCCeeeEEeec--CCCceeEEEEcCCC---EEE-EEeCCCcEEEEeCcccCCCc
Q 012007 240 CLSLNAEQGLLYSGSW-DKTLKVWRISDCKCLESINA--HDDAINSVVAGFDS---LVF-TGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~--~~~~v~~l~~~~~~---~l~-s~~~dg~i~vwd~~~~~~~~ 312 (473)
+++.+-++-++.+.+. |..++++|+++...+.-++. -.+.+..+ .++.. .++ +.-.+|.+.++|-....
T Consensus 58 sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~--- 133 (558)
T KOG0882|consen 58 SLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDF--- 133 (558)
T ss_pred hhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCc---
Confidence 9999999999999777 99999999988766544332 22222222 23332 333 34457899999976322
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEE
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLW 392 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iw 392 (473)
........-|..+|..+.+.+.+..+++....|.|..|..+...+. .. +. ..|
T Consensus 134 -~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qf---Pr----------------------~~-l~~ 186 (558)
T KOG0882|consen 134 -CQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQF---PR----------------------TN-LNF 186 (558)
T ss_pred -CccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccC---cc----------------------cc-ccc
Confidence 2233455668999999999999999999999999999997742221 10 01 124
Q ss_pred ecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 393 RREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 393 d~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
.+.. ..-+..+.......+++.|+|++. .+.+-+.|..|+++.+..++....
T Consensus 187 ~~K~---eTdLy~f~K~Kt~pts~Efsp~g~-------------qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 187 ELKH---ETDLYGFPKAKTEPTSFEFSPDGA-------------QISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred cccc---cchhhcccccccCccceEEccccC-------------cccccCcccEEEEEEeccchhhhh
Confidence 4443 222333334456789999999998 799999999999999998764433
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00015 Score=65.64 Aligned_cols=269 Identities=15% Similarity=0.224 Sum_probs=152.7
Q ss_pred cEEEeeCCcc-ccccccCcccEEEEEEeCCCCEEEEEeC----------CCeEEEEeCCCCCeeeEEeeccccccceeEe
Q 012007 144 NIRVWKNLKE-FSGFKSNSGLVKAIIISGDSNKIFTGHQ----------DGKIRIWKVSRKNASVHKRVGSLPTFKDYVK 212 (473)
Q Consensus 144 ~i~vwd~~~~-~~~~~~h~~~V~~l~~s~~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 212 (473)
.+.|+|..+. +.... ..+-.-.+..+|+++.++++.. .-.|.+||..+........+...+...
T Consensus 18 rv~viD~d~~k~lGmi-~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~---- 92 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMI-DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ---- 92 (342)
T ss_dssp EEEEEETTTTEEEEEE-EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B------
T ss_pred eEEEEECCCCcEEEEe-ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe----
Confidence 5777774422 11111 2233445678999998887542 346999999988765554443211100
Q ss_pred ecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC--CCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCE
Q 012007 213 SSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW--DKTLKVWRISDCKCLESINAHDDAINSVVAGFDSL 290 (473)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~--dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~ 290 (473)
.......+.++.+++++++... -..|.|.|+...+.+.++.... ...+--..+.-
T Consensus 93 ---------------------~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~~~~~ 149 (342)
T PF06433_consen 93 ---------------------VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPSGNRG 149 (342)
T ss_dssp ---------------------BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEEETTE
T ss_pred ---------------------ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEecCCCc
Confidence 1112334678889998888643 3569999999999988887432 22232233346
Q ss_pred EEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEE-EEEEccCCCEEEEeCCCCcEEEEecCCcccc-c--------
Q 012007 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVT-ALAVNQESAVVYCGSSDGLVNFWECEKHLSH-G-------- 360 (473)
Q Consensus 291 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~-------- 360 (473)
+.+-|.||.+....+...++.. ......+.....++. .-++...+..++.-+.+|.|+--|+...... .
T Consensus 150 F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~ 228 (342)
T PF06433_consen 150 FSMLCGDGSLLTVTLDADGKEA-QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTD 228 (342)
T ss_dssp EEEEETTSCEEEEEETSTSSEE-EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-H
T ss_pred eEEEecCCceEEEEECCCCCEe-EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCc
Confidence 8888999999999988665533 222223333333332 3344555555555778888888877643211 0
Q ss_pred ----ceeecCcceEEEEEecCCEEEEEe--------CCC--cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCc
Q 012007 361 ----GVLRGHKMAVLCLAAAGNLVFSGS--------ADR--NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDH 426 (473)
Q Consensus 361 ----~~~~~~~~~v~~~~~~~~~l~s~~--------~dg--~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~ 426 (473)
.......-...++....+.|++-- .|+ .|-++|+.+ .+.+..+.. ..++.+|+.+.+.+-
T Consensus 229 ~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t---~krv~Ri~l-~~~~~Si~Vsqd~~P-- 302 (342)
T PF06433_consen 229 AEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT---HKRVARIPL-EHPIDSIAVSQDDKP-- 302 (342)
T ss_dssp HHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT---TEEEEEEEE-EEEESEEEEESSSS---
T ss_pred cccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC---CeEEEEEeC-CCccceEEEccCCCc--
Confidence 011112223455555444444322 122 266667776 566666653 346889999988763
Q ss_pred ccccCCCccEEEEE-eeCCCcEEEEEcCCCCC
Q 012007 427 EYHQKGDQRWTVYS-GSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 427 ~~~~~~~~~~~l~s-~s~Dg~v~iW~i~~~~~ 457 (473)
+|++ ...++.+.+||..+++.
T Consensus 303 ----------~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 303 ----------LLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp ----------EEEEEETTTTEEEEEETTT--E
T ss_pred ----------EEEEEcCCCCeEEEEeCcCCcE
Confidence 5554 45689999999998854
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.8e-06 Score=83.09 Aligned_cols=183 Identities=13% Similarity=0.173 Sum_probs=129.3
Q ss_pred cCCEEEEeeCCCcEEEeeCCccc--cccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccce
Q 012007 132 SGDLLYTGSDSKNIRVWKNLKEF--SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKD 209 (473)
Q Consensus 132 ~g~~l~tg~~dg~i~vwd~~~~~--~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 209 (473)
++..++.|+-...+..+|..+.. +...-..+.|+-++. ++++|++|...|+|.+-|..+.+......
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~--------- 214 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFD--------- 214 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeee---------
Confidence 35566777766677777765332 222222333655554 67899999999999999998877655443
Q ss_pred eEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC---------CCCEEEEEcCCCeeeEEeecCCCce
Q 012007 210 YVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW---------DKTLKVWRISDCKCLESINAHDDAI 280 (473)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~---------dg~v~vwd~~~~~~~~~~~~~~~~v 280 (473)
.|.+.|..+.. .|++|++++. |.-|+|||++..+.+.-+..+.++
T Consensus 215 -----------------------aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P- 268 (1118)
T KOG1275|consen 215 -----------------------AHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP- 268 (1118)
T ss_pred -----------------------ccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-
Confidence 38888887654 6889999875 456899999988877766655554
Q ss_pred eEEEEcCC--CEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEec
Q 012007 281 NSVVAGFD--SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWEC 353 (473)
Q Consensus 281 ~~l~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~ 353 (473)
.-+.+.|. ..+++++..|...+.|...-.+ ...-..........+..+.++++++.++.|..+|.|.+|.-
T Consensus 269 ~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN--P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 269 QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN--PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred hhhhhcccccceEEEEecccceeeccccccCC--CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 34556665 3888999999999999442221 11122333444556999999999999999999999999973
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.9e-05 Score=76.69 Aligned_cols=204 Identities=18% Similarity=0.335 Sum_probs=134.2
Q ss_pred CeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCc-eeEEEEcCC-CEEEEEeCCCc-----EEEEeCcccC
Q 012007 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDA-INSVVAGFD-SLVFTGSADGT-----VKVWRRELQG 309 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-v~~l~~~~~-~~l~s~~~dg~-----i~vwd~~~~~ 309 (473)
.|+| |++.+..++.|+.+|.|.+.+ +..+.++.++++... |..+....+ .+|++.+.|+. |++|+++..+
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4554 568889999999999988887 345556888888777 444444333 37777776654 8999998654
Q ss_pred CCc-ceeee-eeec-----cCCccEEEEEEccCCCEEEEeCCCCcEEEEecC--C-cccccceeecCcceEEEEEe--cC
Q 012007 310 KGT-KHCLA-QVLL-----KHENAVTALAVNQESAVVYCGSSDGLVNFWECE--K-HLSHGGVLRGHKMAVLCLAA--AG 377 (473)
Q Consensus 310 ~~~-~~~~~-~~~~-----~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~--~-~~~~~~~~~~~~~~v~~~~~--~~ 377 (473)
+.. ..+.. .... ....++.+++.+.+-..+++|-.+|.|..+.-+ . .............+|+.+.. ++
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~ 183 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDG 183 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCC
Confidence 333 22220 1111 235678999999999999999999999998532 1 11111222234456766654 45
Q ss_pred CE-EEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 378 NL-VFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 378 ~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
.. ++++. -..|.+|.+... . ..+..+..|...+.|-.+++... .|++++. ..|.+|+.....
T Consensus 184 ~s~lFv~T-t~~V~~y~l~gr-~-p~~~~ld~~G~~lnCss~~~~t~-------------qfIca~~-e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 184 KSVLFVAT-TEQVMLYSLSGR-T-PSLKVLDNNGISLNCSSFSDGTY-------------QFICAGS-EFLYFYDSDGRG 246 (933)
T ss_pred ceeEEEEe-cceeEEEEecCC-C-cceeeeccCCccceeeecCCCCc-------------cEEEecC-ceEEEEcCCCcc
Confidence 55 44444 457999999852 2 34566778888999999998765 3555543 358888887665
Q ss_pred CCcc
Q 012007 457 PDLK 460 (473)
Q Consensus 457 ~~~~ 460 (473)
+.+.
T Consensus 247 ~cfa 250 (933)
T KOG2114|consen 247 PCFA 250 (933)
T ss_pred eeee
Confidence 5544
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2e-07 Score=91.44 Aligned_cols=197 Identities=15% Similarity=0.206 Sum_probs=131.8
Q ss_pred CccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceee
Q 012007 151 LKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVL 230 (473)
Q Consensus 151 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (473)
.+..+.+..|....+|++|+.+.+.|+.|+..|.|+++++.++.......
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n------------------------------ 1140 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN------------------------------ 1140 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccc------------------------------
Confidence 35566778899999999999999999999999999999999987543332
Q ss_pred EeeccCCeeEEEEcCCCCEEEEEeCCC--CEEEEEcCC-CeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCc
Q 012007 231 KIRHYDAVSCLSLNAEQGLLYSGSWDK--TLKVWRISD-CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRE 306 (473)
Q Consensus 231 ~~~~~~~v~~l~~~~~~~~l~s~s~dg--~v~vwd~~~-~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~ 306 (473)
+|..+|+-+.-+.+|..+++.+.-. -..+|++.. +...+++.. -.++.|+... .-+.|+......+||+.
T Consensus 1141 --cH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvq 1214 (1516)
T KOG1832|consen 1141 --CHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQ 1214 (1516)
T ss_pred --ccccccccccccCCcceeeeeccccCchHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecc
Confidence 3999999999888998877765433 477999864 455555542 3456676554 33445555778899998
Q ss_pred ccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcce-EEEEEecCCEEEEEeC
Q 012007 307 LQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMA-VLCLAAAGNLVFSGSA 385 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~l~s~~~ 385 (473)
+..... .......+....-.+..|+|+..+++ .|| .+||.+...... .+...... --.|.|+|..++.-+.
T Consensus 1215 T~~~l~--tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh-~FD~ft~~~~G~FHP~g~eVIINSE 1286 (1516)
T KOG1832|consen 1215 TCSPLQ--TYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIH-RFDQFTDYGGGGFHPSGNEVIINSE 1286 (1516)
T ss_pred cCcHHH--HhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHh-hhhhheecccccccCCCceEEeech
Confidence 543211 11111112222336788999888775 355 579998753332 22211111 1346778888887663
Q ss_pred CCcEEEEecCC
Q 012007 386 DRNICLWRREE 396 (473)
Q Consensus 386 dg~i~iwd~~~ 396 (473)
|||+++
T Consensus 1287 -----IwD~RT 1292 (1516)
T KOG1832|consen 1287 -----IWDMRT 1292 (1516)
T ss_pred -----hhhhHH
Confidence 899887
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.8e-05 Score=76.92 Aligned_cols=228 Identities=11% Similarity=0.058 Sum_probs=129.8
Q ss_pred cccEEEEEe--cCCEEEEeeCCCcEEEeeCCcccccccc-CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEE
Q 012007 123 EGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKEFSGFKS-NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHK 199 (473)
Q Consensus 123 ~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~~~~~~~~-h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 199 (473)
.+.|.++.+ ++.-++.+..+|.|.+-|.........+ -.+.|.+++|+||+..++....++++.+-.- +.......
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchhcc
Confidence 356777776 4677888888899999987654444443 4578999999999999999888887766432 11111111
Q ss_pred eecc-ccccceeEe-ecCCCcceEEEeecc--------eeeE---eeccCCeeEEEEcCCCCEEEEEe----CC-CCEEE
Q 012007 200 RVGS-LPTFKDYVK-SSVNPKNYVEVRRNR--------SVLK---IRHYDAVSCLSLNAEQGLLYSGS----WD-KTLKV 261 (473)
Q Consensus 200 ~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~---~~~~~~v~~l~~~~~~~~l~s~s----~d-g~v~v 261 (473)
.... ......++. .-......+.....+ .... +.-.+.=..|.|--||.++++.. .+ ..|+|
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 1100 000000000 000000000000000 0000 00112234688999999999842 23 78999
Q ss_pred EEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEE---eCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCC
Q 012007 262 WRISDCKCLESINAHDDAINSVVAGFDS-LVFTG---SADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESA 337 (473)
Q Consensus 262 wd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~---~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 337 (473)
||-+ |..-..-....+.-.+++|-|.| .+++- ..|+.|.++..+.-. ..............|..++|+.++.
T Consensus 227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~---hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR---HGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc---ccccccCCcccccchheeeecCCCC
Confidence 9976 44322222334445678999988 44443 346679999765211 1111222333344599999999999
Q ss_pred EEEE---eCCCCcEEEEecCC
Q 012007 338 VVYC---GSSDGLVNFWECEK 355 (473)
Q Consensus 338 ~l~~---~~~dg~i~iwd~~~ 355 (473)
.|++ ......|++|-+.+
T Consensus 303 iLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred ceeeeecccccceEEEEEecC
Confidence 9988 45555699998765
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00038 Score=66.06 Aligned_cols=256 Identities=11% Similarity=0.165 Sum_probs=129.9
Q ss_pred cEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeee-EEeecccc-ccceeEeecCCCcceEEEee---------cce-ee
Q 012007 163 LVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASV-HKRVGSLP-TFKDYVKSSVNPKNYVEVRR---------NRS-VL 230 (473)
Q Consensus 163 ~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~-~~ 230 (473)
.|+.+.|.++..-|+.|...|.|.||.+...+.-. ........ ....+ .....+..+.++.. ..+ .+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRF-SLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S---GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccc-cccCCCcceEEehhhCCcccccccCchhh
Confidence 58899999998899999999999999876553322 00000000 00000 00000111111111 111 11
Q ss_pred EeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee--c------CCCceeEEEEc-----CCC----EEEE
Q 012007 231 KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN--A------HDDAINSVVAG-----FDS----LVFT 293 (473)
Q Consensus 231 ~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~------~~~~v~~l~~~-----~~~----~l~s 293 (473)
.....++|++++.+ |=.+++.|..+|.+.|.|++....+..-. . ....++++.|. .|+ .+++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 22247899999997 55699999999999999998887776532 1 23456777664 233 7889
Q ss_pred EeCCCcEEEEeCcccCCC-cceeeeeeeccCCccEEEEE-EccC-C-------------------CEEEEeCCCCcEEEE
Q 012007 294 GSADGTVKVWRRELQGKG-TKHCLAQVLLKHENAVTALA-VNQE-S-------------------AVVYCGSSDGLVNFW 351 (473)
Q Consensus 294 ~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~v~~l~-~~~~-~-------------------~~l~~~~~dg~i~iw 351 (473)
|...|.+.+|.+...... ...........+.+.|..|. ++.+ | .-++....+..++++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 999999999988632211 12222223335666666665 3221 0 123333446789999
Q ss_pred ecCCcccccceeecC-cceEEEEE-----ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecC----CCCceeEEEEecC
Q 012007 352 ECEKHLSHGGVLRGH-KMAVLCLA-----AAGNLVFSGSADRNICLWRREESGAHSCLAVLTG----HTGPVKCLAVEED 421 (473)
Q Consensus 352 d~~~~~~~~~~~~~~-~~~v~~~~-----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----h~~~V~~l~~~~~ 421 (473)
...+.+...+.+..+ .....++. ..+..|++-..+|.|++|.+-. .+.+....- +...+....++++
T Consensus 241 ~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~---Lkei~~~~l~~~~d~~~~~~ssis~~ 317 (395)
T PF08596_consen 241 KPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS---LKEIKSVSLPPPLDSRRLSSSSISRN 317 (395)
T ss_dssp -TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-----EEEEEE-SS---HHHHTT-EE-TT
T ss_pred eCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC---chHhhcccCCCccccccccccEECCC
Confidence 887655443343221 11122332 2467788889999999999988 344443332 2234566777888
Q ss_pred CC
Q 012007 422 RD 423 (473)
Q Consensus 422 ~~ 423 (473)
|.
T Consensus 318 Gd 319 (395)
T PF08596_consen 318 GD 319 (395)
T ss_dssp S-
T ss_pred CC
Confidence 87
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.3e-05 Score=77.36 Aligned_cols=162 Identities=19% Similarity=0.188 Sum_probs=107.5
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee-cCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCC
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN-AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
+...|.--+++..+++++.|+.-|.|++|+-..++....-. +....+..+..++.. ++++|+..|.|.++-+......
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 45556666677788999999999999999966554433222 233444555566666 7788888999999988753332
Q ss_pred cceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCc---ccccceeecCcceEEEEEecCCEEEEEeCCCc
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH---LSHGGVLRGHKMAVLCLAAAGNLVFSGSADRN 388 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~ 388 (473)
........-..|...|++++|++++..+++|...|+|.+-.+... ......+......|..++.-..+|++++--..
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~ 191 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRC 191 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhhh
Confidence 222222223347889999999999999999999999998877651 11223334455677777766666655554433
Q ss_pred EEEEecCC
Q 012007 389 ICLWRREE 396 (473)
Q Consensus 389 i~iwd~~~ 396 (473)
+ +++++.
T Consensus 192 ~-Lc~tE~ 198 (726)
T KOG3621|consen 192 I-LCQTEA 198 (726)
T ss_pred h-eeecch
Confidence 3 444443
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0016 Score=55.74 Aligned_cols=138 Identities=15% Similarity=0.138 Sum_probs=83.4
Q ss_pred CCEEEEeeCCCcEEEeeCCcccccccc-CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeE
Q 012007 133 GDLLYTGSDSKNIRVWKNLKEFSGFKS-NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYV 211 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~~~~~~~~~-h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 211 (473)
..+++.|+..+.+.--|....-..++. -...|.+-+.- -|++++.|+..|.+++.++.++.....+...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~--------- 92 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL--------- 92 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh---------
Confidence 345555665555555553322111111 12223332222 3668999999999999999998655444321
Q ss_pred eecCCCcceEEEeecceeeEeeccCCeeE-EEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcC-CC
Q 012007 212 KSSVNPKNYVEVRRNRSVLKIRHYDAVSC-LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGF-DS 289 (473)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~-~~ 289 (473)
+.|.+ -...+++.+++.|+.|++.+..|.++..++...+.......+-+..+ ++
T Consensus 93 ------------------------~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~ 148 (354)
T KOG4649|consen 93 ------------------------ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDG 148 (354)
T ss_pred ------------------------hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCc
Confidence 22222 23467899999999999999999999999988775554444444445 34
Q ss_pred EEEEEeCCCcEEEEe
Q 012007 290 LVFTGSADGTVKVWR 304 (473)
Q Consensus 290 ~l~s~~~dg~i~vwd 304 (473)
.|+.+...|.+.-..
T Consensus 149 sly~a~t~G~vlavt 163 (354)
T KOG4649|consen 149 SLYAAITAGAVLAVT 163 (354)
T ss_pred eEEEEeccceEEEEc
Confidence 555555555544433
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0014 Score=58.77 Aligned_cols=188 Identities=16% Similarity=0.164 Sum_probs=111.2
Q ss_pred EEEeCCCCEEEEEeC-----CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE
Q 012007 167 IIISGDSNKIFTGHQ-----DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL 241 (473)
Q Consensus 167 l~~s~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 241 (473)
-+|++||++|++.-. .|.|-|||.... ......... |.-.-..+
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~-~~ri~E~~s------------------------------~GIGPHel 104 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARG-YRRIGEFPS------------------------------HGIGPHEL 104 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCC-cEEEeEecC------------------------------CCcChhhE
Confidence 479999999998644 488999999832 222111111 22233456
Q ss_pred EEcCCCCEEEEEe------------------CCCCEEEEEcCCCeeeEEee----cCCCceeEEEEcCCCEEEEEeCC-C
Q 012007 242 SLNAEQGLLYSGS------------------WDKTLKVWRISDCKCLESIN----AHDDAINSVVAGFDSLVFTGSAD-G 298 (473)
Q Consensus 242 ~~~~~~~~l~s~s------------------~dg~v~vwd~~~~~~~~~~~----~~~~~v~~l~~~~~~~l~s~~~d-g 298 (473)
.+.||++.|+++. .+-.+...|..+|+.+.... .|...|..+++..++.++.+... |
T Consensus 105 ~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg 184 (305)
T PF07433_consen 105 LLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQG 184 (305)
T ss_pred EEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCC
Confidence 7788887777763 23456667788888877643 37778999999999866665432 2
Q ss_pred -------cEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEE-eCCCCcEEEEecCCcccccceeecCcceE
Q 012007 299 -------TVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC-GSSDGLVNFWECEKHLSHGGVLRGHKMAV 370 (473)
Q Consensus 299 -------~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 370 (473)
.|-+++.... .............-...+-+|++++++.++++ +-..+.+.+||..++...... .-..+
T Consensus 185 ~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~---~l~D~ 260 (305)
T PF07433_consen 185 DPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV---PLPDA 260 (305)
T ss_pred CCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc---ccCce
Confidence 1333432210 00000001112334567899999999987755 456778999999886543221 12234
Q ss_pred EEEEec-CCEEEEEeCCCcEE
Q 012007 371 LCLAAA-GNLVFSGSADRNIC 390 (473)
Q Consensus 371 ~~~~~~-~~~l~s~~~dg~i~ 390 (473)
+.+++. +.++++.+ .|.+.
T Consensus 261 cGva~~~~~f~~ssG-~G~~~ 280 (305)
T PF07433_consen 261 CGVAPTDDGFLVSSG-QGQLI 280 (305)
T ss_pred eeeeecCCceEEeCC-CccEE
Confidence 555554 33555544 45433
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0036 Score=60.11 Aligned_cols=113 Identities=15% Similarity=0.158 Sum_probs=78.0
Q ss_pred ccCCeeEEEEcC-CCCEEEEE----eCCCC----EEEEEcCCCee--e--EEeecCCCceeEEEEcCCC-EEEEEeCCCc
Q 012007 234 HYDAVSCLSLNA-EQGLLYSG----SWDKT----LKVWRISDCKC--L--ESINAHDDAINSVVAGFDS-LVFTGSADGT 299 (473)
Q Consensus 234 ~~~~v~~l~~~~-~~~~l~s~----s~dg~----v~vwd~~~~~~--~--~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~ 299 (473)
......++.|+. +...+.+. +.+|. -.+|++...+. + ..+ .....|.+++++|+. .++.|+.||.
T Consensus 204 TE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgS 282 (545)
T PF11768_consen 204 TENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGS 282 (545)
T ss_pred ecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCe
Confidence 334446667776 33444443 33444 34566654432 1 122 356788999999987 9999999999
Q ss_pred EEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCC
Q 012007 300 VKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEK 355 (473)
Q Consensus 300 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~ 355 (473)
|.+||...+ ........-..+.++|+|+|.++++|+..|.+.+||+.-
T Consensus 283 iiLyD~~~~--------~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 283 IILYDTTRG--------VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEEEEcCCC--------eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 999998632 111223345678999999999999999999999999864
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.7e-05 Score=73.56 Aligned_cols=107 Identities=12% Similarity=0.152 Sum_probs=77.3
Q ss_pred EEEEEecCCEEEEee----CCCcEEEe-eCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEe
Q 012007 126 IYSLAASGDLLYTGS----DSKNIRVW-KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKR 200 (473)
Q Consensus 126 V~~~~~~g~~l~tg~----~dg~i~vw-d~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 200 (473)
|.++.|...++|+++ ..|.|-|| |..++.... .-.-.+++++|+|..-.|+.|-.-|.+.+|...+.+......
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~V-t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~ 98 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDV-TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE 98 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEecCCCCCccc-ccceehhhhccChHHHHHhhccccceeEEEecCCceeeeecc
Confidence 344555555666554 35788888 444332221 122346779999998889999889999999987665322111
Q ss_pred eccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 012007 201 VGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS 265 (473)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~ 265 (473)
.|..+|..+.|+++|+.|+++..-|.|.+|.+.
T Consensus 99 --------------------------------th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 99 --------------------------------THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred --------------------------------CCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 299999999999999999999999999999875
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0046 Score=55.49 Aligned_cols=220 Identities=12% Similarity=0.108 Sum_probs=129.1
Q ss_pred EEEEEEeC-CCCEEEEEeCCCe-EEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE
Q 012007 164 VKAIIISG-DSNKIFTGHQDGK-IRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL 241 (473)
Q Consensus 164 V~~l~~s~-~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 241 (473)
...++.+| ....++.+-.-|. ..+||..+++........ ....+.+| -
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~------------------------~gRHFyGH------g 56 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP------------------------PGRHFYGH------G 56 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC------------------------CCCEEecC------E
Confidence 45677788 4455566655554 678999888765433321 11122244 5
Q ss_pred EEcCCCCEEEEEe-----CCCCEEEEEcC-CCeeeEEeecCCCceeEEEEcCCC-EEEEEeC-------CC---------
Q 012007 242 SLNAEQGLLYSGS-----WDKTLKVWRIS-DCKCLESINAHDDAINSVVAGFDS-LVFTGSA-------DG--------- 298 (473)
Q Consensus 242 ~~~~~~~~l~s~s-----~dg~v~vwd~~-~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~-------dg--------- 298 (473)
.|++||++|++.- ..|.|-|||.. +.+.+.++..|.-.-..+.+.|++ .|+++.. .|
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM 136 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTM 136 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhc
Confidence 7999999999974 34789999998 678888898887777778888888 5554421 12
Q ss_pred --cEEEEeCcccCCCcceeeeeee--ccCCccEEEEEEccCCCEEEEeCCCC-------cEEEEecCCcccccc----ee
Q 012007 299 --TVKVWRRELQGKGTKHCLAQVL--LKHENAVTALAVNQESAVVYCGSSDG-------LVNFWECEKHLSHGG----VL 363 (473)
Q Consensus 299 --~i~vwd~~~~~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~----~~ 363 (473)
.+.+.|..++.. .....+ ..|...|..+++.++|..++..-..| .|-+++......... ..
T Consensus 137 ~psL~~ld~~sG~l----l~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~ 212 (305)
T PF07433_consen 137 QPSLVYLDARSGAL----LEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQW 212 (305)
T ss_pred CCceEEEecCCCce----eeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHH
Confidence 233333332211 111123 34778899999999988776654433 244454433211111 11
Q ss_pred ecCcceEEEE--EecCCEEEEE-eCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCC
Q 012007 364 RGHKMAVLCL--AAAGNLVFSG-SADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDR 422 (473)
Q Consensus 364 ~~~~~~v~~~--~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 422 (473)
..-...+-++ +.++.++++. =..+.+.+||..+ ...+....- ..+..++..+++
T Consensus 213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t---g~~~~~~~l--~D~cGva~~~~~ 269 (305)
T PF07433_consen 213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT---GRLLGSVPL--PDACGVAPTDDG 269 (305)
T ss_pred HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC---CCEeecccc--CceeeeeecCCc
Confidence 1222344444 4567666554 4667899999988 344544332 234555555554
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00046 Score=65.46 Aligned_cols=206 Identities=12% Similarity=0.125 Sum_probs=113.3
Q ss_pred CeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe-------------------------------------------eeEEe
Q 012007 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK-------------------------------------------CLESI 273 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~-------------------------------------------~~~~~ 273 (473)
.|+.+.|.++...|++|...|.|.||.....+ +...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47889999998999999999999998653211 11222
Q ss_pred ecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeec------cCCccEEEEEEcc-----CC---CEE
Q 012007 274 NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLL------KHENAVTALAVNQ-----ES---AVV 339 (473)
Q Consensus 274 ~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~------~~~~~v~~l~~~~-----~~---~~l 339 (473)
....++|++++.+.-|+++.|..+|.+.|.|+|... ......+. .....|+++.|.- |+ -.+
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPa----vI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPA----VIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTE----EEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCe----EEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 344678999999988999999999999999997321 11111111 2345678888762 33 478
Q ss_pred EEeCCCCcEEEEecCC--ccc----ccceeecCcceEEEEEe---c---------------------CCEEEEEeCCCcE
Q 012007 340 YCGSSDGLVNFWECEK--HLS----HGGVLRGHKMAVLCLAA---A---------------------GNLVFSGSADRNI 389 (473)
Q Consensus 340 ~~~~~dg~i~iwd~~~--~~~----~~~~~~~~~~~v~~~~~---~---------------------~~~l~s~~~dg~i 389 (473)
++|+..|.+.+|.+-- ... .......+...+..+.+ + ..++++++ +..+
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~~i 237 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-ESDI 237 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-ccce
Confidence 8999999999997641 111 11111234455544432 1 12444444 6789
Q ss_pred EEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 390 CLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 390 ~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
+++...+. +.........-....+.+-+-.. ......|++-..||.|+++.+...+..
T Consensus 238 rv~~~~~~---k~~~K~~~~~~~~~~~~vv~~~~--------~~~~~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 238 RVFKPPKS---KGAHKSFDDPFLCSSASVVPTIS--------RNGGYCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp EEE-TT------EEEEE-SS-EEEEEEEEEEEE---------EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred EEEeCCCC---cccceeeccccccceEEEEeecc--------cCCceEEEEEECCCcEEEEECCCchHh
Confidence 99998773 33332222222334444532100 001117888889999999999876544
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00054 Score=64.03 Aligned_cols=182 Identities=15% Similarity=0.170 Sum_probs=112.7
Q ss_pred CCEEEEEcCCCeeeEEeecC-CCceeEEE---EcC-----CCEEEEEeC----------CCcEEEEeCcccCCCcceeee
Q 012007 257 KTLKVWRISDCKCLESINAH-DDAINSVV---AGF-----DSLVFTGSA----------DGTVKVWRRELQGKGTKHCLA 317 (473)
Q Consensus 257 g~v~vwd~~~~~~~~~~~~~-~~~v~~l~---~~~-----~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~ 317 (473)
..|++.|..+.+.+..+.-. ...+.+++ +.. ..++++|+. .|.|.++++............
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35788888887777665422 23344443 332 336776654 288999998753110111222
Q ss_pred eeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcc-cccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCC
Q 012007 318 QVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHL-SHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 318 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
.......++|++++-- ++.++++. ++.|.+|++.... ............+.++...++++++|.....+.++..+.
T Consensus 82 i~~~~~~g~V~ai~~~-~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred EEEEeecCcceEhhhh-CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence 2233457889999877 44444333 4789999998765 333333334457888888899999999999999886654
Q ss_pred CCc-eeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 397 SGA-HSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 397 ~~~-~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
... ...+.. ......++++.|-+++. .++.+..+|.|.++.....
T Consensus 159 ~~~~l~~va~-d~~~~~v~~~~~l~d~~-------------~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 159 ENNKLILVAR-DYQPRWVTAAEFLVDED-------------TIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp TTE-EEEEEE-ESS-BEEEEEEEE-SSS-------------EEEEEETTSEEEEEEE-SS
T ss_pred cCCEEEEEEe-cCCCccEEEEEEecCCc-------------EEEEEcCCCeEEEEEECCC
Confidence 221 223332 23355689999987765 7999999999999999743
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.3e-06 Score=81.40 Aligned_cols=198 Identities=20% Similarity=0.227 Sum_probs=123.8
Q ss_pred cccEEEEEEeCCC--CEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCe
Q 012007 161 SGLVKAIIISGDS--NKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAV 238 (473)
Q Consensus 161 ~~~V~~l~~s~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 238 (473)
...+.|+++.-+. ..++.|..+|.|-+-.+......... ...++...+
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E------------------------------~tp~~ar~C 105 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAE------------------------------VTPGYARPC 105 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccce------------------------------ecccccccc
Confidence 3457777775443 47888999999998877654322111 111388899
Q ss_pred eEEEEcC-CCCEEEEEe----CCCCEEEEEcCCC--eeeEE--eec-CCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcc
Q 012007 239 SCLSLNA-EQGLLYSGS----WDKTLKVWRISDC--KCLES--INA-HDDAINSVVAGFDS-LVFTGSADGTVKVWRREL 307 (473)
Q Consensus 239 ~~l~~~~-~~~~l~s~s----~dg~v~vwd~~~~--~~~~~--~~~-~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~ 307 (473)
++++|++ |.+.||+|- .|..+.|||+.++ .+... +.+ ......+++|..+. ++++|.....++++|++.
T Consensus 106 t~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq 185 (783)
T KOG1008|consen 106 TSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ 185 (783)
T ss_pred cccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhh
Confidence 9999998 566777763 4567999999876 22222 222 33455678887665 778888888999999973
Q ss_pred cCCCcceeeeeeeccCCccEEEEEEcc-CCCEEEEeCCCCcEEEEe-cCCcccccceeecCc----ceEEEEEec---CC
Q 012007 308 QGKGTKHCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWE-CEKHLSHGGVLRGHK----MAVLCLAAA---GN 378 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~----~~v~~~~~~---~~ 378 (473)
.. .....-....+..+.+.| .+.++++- .||.|.+|| .++-+.+........ ..+..+++. ..
T Consensus 186 s~-------~~~~svnTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtg 257 (783)
T KOG1008|consen 186 SL-------DSVSSVNTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTG 257 (783)
T ss_pred hh-------hhhhhhhhhhcccceecCCCCCceecc-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcc
Confidence 21 111122234566788888 66777554 499999999 333222222221111 135555554 34
Q ss_pred EEEEEeC-CCcEEEEecCC
Q 012007 379 LVFSGSA-DRNICLWRREE 396 (473)
Q Consensus 379 ~l~s~~~-dg~i~iwd~~~ 396 (473)
++++... .++|+++++..
T Consensus 258 lla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 258 LLAVLSRDSITIRLYDICV 276 (783)
T ss_pred hhhhhccCcceEEEecccc
Confidence 5555554 47899999863
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.5e-05 Score=69.54 Aligned_cols=155 Identities=15% Similarity=0.169 Sum_probs=102.8
Q ss_pred EEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC
Q 012007 259 LKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES 336 (473)
Q Consensus 259 v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 336 (473)
|++.+..+.+....+..+...|..++++|.. ++..++.+..|+|.|+++ .........+ ..+++++|.-+.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet------~~~vssy~a~-~~~wSC~wDlde 247 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET------SCVVSSYIAY-NQIWSCCWDLDE 247 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccc------ceeeeheecc-CCceeeeeccCC
Confidence 7777777777777778888999999999875 788999999999999973 2334444455 789999998754
Q ss_pred -CEEEEeCCCCcEEEEecCCcccccceeec--CcceEEEEEe--------cCCEEEEEeCCCcEEEEecCCCCc-eeEEE
Q 012007 337 -AVVYCGSSDGLVNFWECEKHLSHGGVLRG--HKMAVLCLAA--------AGNLVFSGSADRNICLWRREESGA-HSCLA 404 (473)
Q Consensus 337 -~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~--------~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~ 404 (473)
.+|++|..+|.|.|||++....+...+.+ ...+|..+++ .|.+|+....+ +..|++..... ..++.
T Consensus 248 ~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vl 325 (463)
T KOG1645|consen 248 RHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVL 325 (463)
T ss_pred cceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccc
Confidence 78999999999999999876554443333 1233444332 35566666544 66787754221 22222
Q ss_pred EecCCCCceeEEEEecCCC
Q 012007 405 VLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 405 ~~~~h~~~V~~l~~~~~~~ 423 (473)
.+ +..+...+++.++..+
T Consensus 326 el-e~pG~cismqy~~~sn 343 (463)
T KOG1645|consen 326 EL-EPPGICISMQYHGVSN 343 (463)
T ss_pred cc-CCCcceeeeeecCccc
Confidence 22 2244555555555433
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.09 E-value=3e-06 Score=83.53 Aligned_cols=172 Identities=13% Similarity=0.199 Sum_probs=119.7
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCC-cEEEEeCcccCC
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADG-TVKVWRRELQGK 310 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg-~i~vwd~~~~~~ 310 (473)
|....+|++|+-+.+.|+.|+..|.|+++++.+|........|..+|+-+.-+.+| +|.+.+... -..+|+....
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~-- 1177 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST-- 1177 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccc--
Confidence 77889999999999999999999999999999999999999999999999988887 333333333 5789998621
Q ss_pred CcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecC-----cceEEEEEecCCEEEEEeC
Q 012007 311 GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGH-----KMAVLCLAAAGNLVFSGSA 385 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~l~s~~~ 385 (473)
...... -..-.++.|+.....-+.|+......+||+++...+...+.+- ......|+|+..+++-
T Consensus 1178 ---~~~~Hs----f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln--- 1247 (1516)
T KOG1832|consen 1178 ---GGPRHS----FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN--- 1247 (1516)
T ss_pred ---cCcccc----ccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---
Confidence 111111 2334678888765555667666789999999876655444322 2234556677777663
Q ss_pred CCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 386 DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 386 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
|| .+||++.. ..+..+...+.. -.-.|+|.+.
T Consensus 1248 dG--vLWDvR~~---~aIh~FD~ft~~-~~G~FHP~g~ 1279 (1516)
T KOG1832|consen 1248 DG--VLWDVRIP---EAIHRFDQFTDY-GGGGFHPSGN 1279 (1516)
T ss_pred Cc--eeeeeccH---HHHhhhhhheec-ccccccCCCc
Confidence 44 47999873 444444433321 2335888887
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00062 Score=69.22 Aligned_cols=136 Identities=15% Similarity=0.227 Sum_probs=94.6
Q ss_pred CCCCEEEEEcCCCeeeEEeecCCCc-eeEEEEcC------CCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccE
Q 012007 255 WDKTLKVWRISDCKCLESINAHDDA-INSVVAGF------DSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAV 327 (473)
Q Consensus 255 ~dg~v~vwd~~~~~~~~~~~~~~~~-v~~l~~~~------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v 327 (473)
....|+-.|++.|+.+..++.+... |..++-.. ....+.|-.+..|..||.|..+..... ............
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~-~~~k~Y~~~~~F 580 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD-SQSKQYSSKNNF 580 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceee-ccccccccCCCc
Confidence 4578999999999999999988765 66654321 226788889999999999965411000 011122345567
Q ss_pred EEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEE--EEecCCEEEEEeCCCcEEEEec
Q 012007 328 TALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLC--LAAAGNLVFSGSADRNICLWRR 394 (473)
Q Consensus 328 ~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~s~~~dg~i~iwd~ 394 (473)
+|++-..+| +||+|+.+|.||+||-- +......+.+-..+|.. ++.||++|++.+ +..+.+++.
T Consensus 581 s~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 581 SCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred eEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 788877766 58899999999999943 34444555565666755 457899988877 557777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0081 Score=54.76 Aligned_cols=245 Identities=13% Similarity=0.130 Sum_probs=131.7
Q ss_pred EEecCCEEEEeeCCCcEEEeeCCc-cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecccccc
Q 012007 129 LAASGDLLYTGSDSKNIRVWKNLK-EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTF 207 (473)
Q Consensus 129 ~~~~g~~l~tg~~dg~i~vwd~~~-~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 207 (473)
....++.|+.|+.+| +.+++... .......+...|..+...++-+.|++-+ |+.+.++++..-...........+..
T Consensus 3 ~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 3 ADSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cccCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 344688999999998 88888721 1111112333499999999887777764 59999999876554332110000000
Q ss_pred ceeEeecCCCcceEEEeecceeeEeeccCCeeEEE---EcCCCCEEEEEeCCCCEEEEEcCCC-----eeeEEeecCCCc
Q 012007 208 KDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS---LNAEQGLLYSGSWDKTLKVWRISDC-----KCLESINAHDDA 279 (473)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~---~~~~~~~l~s~s~dg~v~vwd~~~~-----~~~~~~~~~~~~ 279 (473)
. ...........+...+ -......|+++- ...|.+|..... +..+++.. .+.
T Consensus 81 ~------------------~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~l-p~~ 140 (275)
T PF00780_consen 81 R------------------SLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISL-PDP 140 (275)
T ss_pred c------------------cccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEc-CCC
Confidence 0 0000111233344444 112333444444 558888887552 45555553 467
Q ss_pred eeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeee---------eccCCccEEEEEEccCCCEEEEeCCCCcEEE
Q 012007 280 INSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQV---------LLKHENAVTALAVNQESAVVYCGSSDGLVNF 350 (473)
Q Consensus 280 v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---------~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~i 350 (473)
+..+.|. ++.++.|. .....+.|+..+.. ..+... ......++..+... ++.+|++- |..-.+
T Consensus 141 ~~~i~~~-~~~i~v~~-~~~f~~idl~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~f 212 (275)
T PF00780_consen 141 PSSIAFL-GNKICVGT-SKGFYLIDLNTGSP---SELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVF 212 (275)
T ss_pred cEEEEEe-CCEEEEEe-CCceEEEecCCCCc---eEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEE
Confidence 8888887 44555555 44577888874321 111100 00111233333443 45666553 334444
Q ss_pred EecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecC
Q 012007 351 WECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTG 408 (473)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 408 (473)
.|..........+. -......+.....||++.+.+ .|.||++.+ .++++.+..
T Consensus 213 v~~~G~~~r~~~i~-W~~~p~~~~~~~pyli~~~~~-~iEV~~~~~---~~lvQ~i~~ 265 (275)
T PF00780_consen 213 VNKNGEPSRKSTIQ-WSSAPQSVAYSSPYLIAFSSN-SIEVRSLET---GELVQTIPL 265 (275)
T ss_pred EcCCCCcCcccEEE-cCCchhEEEEECCEEEEECCC-EEEEEECcC---CcEEEEEEC
Confidence 45543222212222 233556677778888888765 599999999 466666654
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.3e-06 Score=81.46 Aligned_cols=206 Identities=14% Similarity=0.164 Sum_probs=133.6
Q ss_pred ccCCeeEEEEcCC--CCEEEEEeCCCCEEEEEcCCCee--eEEeecCCCceeEEEEcCCC--EEEEEe----CCCcEEEE
Q 012007 234 HYDAVSCLSLNAE--QGLLYSGSWDKTLKVWRISDCKC--LESINAHDDAINSVVAGFDS--LVFTGS----ADGTVKVW 303 (473)
Q Consensus 234 ~~~~v~~l~~~~~--~~~l~s~s~dg~v~vwd~~~~~~--~~~~~~~~~~v~~l~~~~~~--~l~s~~----~dg~i~vw 303 (473)
....+.|+++.-+ ..++++|..+|.|-+-.++...- ....+.+....++++|.+-. .|++|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 4566788887653 45889999999999988865322 34456778889999998763 666663 36679999
Q ss_pred eCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe-cCCEEEE
Q 012007 304 RRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA-AGNLVFS 382 (473)
Q Consensus 304 d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s 382 (473)
|+...-....... ....+......+++|..+.+++++|.....++++|++........+......-..+.| .++|+++
T Consensus 135 di~s~ltvPke~~-~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 135 DINSLLTVPKESP-LFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred ecccccCCCcccc-ccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceec
Confidence 9975411111111 1111233445688999899999999999999999998432222222111111234454 6788887
Q ss_pred EeCCCcEEEEec-CCCCceeEEEEecCCCC----ceeEEEEecCCCCCcccccCCCccEEEEEeeCC-CcEEEEEcCCC
Q 012007 383 GSADRNICLWRR-EESGAHSCLAVLTGHTG----PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLD-KSVKVWRVSEH 455 (473)
Q Consensus 383 ~~~dg~i~iwd~-~~~~~~~~~~~~~~h~~----~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~D-g~v~iW~i~~~ 455 (473)
-. ||.|.+||. .+ ...++..+..... .+..++|.|.... ++++...| ++|+.+++...
T Consensus 214 ~~-dg~iAiwD~~rn--ienpl~~i~~~~N~~~~~l~~~aycPtrtg------------lla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRN--IENPLQIILRNENKKPKQLFALAYCPTRTG------------LLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred cc-cCceeeccchhh--hccHHHHHhhCCCCcccceeeEEeccCCcc------------hhhhhccCcceEEEeccccc
Confidence 77 999999993 32 1233333332222 3899999998764 67777754 67899998653
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0096 Score=59.03 Aligned_cols=273 Identities=12% Similarity=0.140 Sum_probs=139.5
Q ss_pred CCEEEEeeCCCcEEEeeCCcc--ccccccCcc------cE--EEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeec
Q 012007 133 GDLLYTGSDSKNIRVWKNLKE--FSGFKSNSG------LV--KAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~~~--~~~~~~h~~------~V--~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 202 (473)
+..++.++.++.|.-.|.... +-.+..... .+ ..+... ++..++.++.+|.|..+|.++++..-.....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 555666776777777775422 111111111 11 111221 2257888889999999999999876655432
Q ss_pred cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe---------CCCCEEEEEcCCCeeeEEe
Q 012007 203 SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS---------WDKTLKVWRISDCKCLESI 273 (473)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s---------~dg~v~vwd~~~~~~~~~~ 273 (473)
..... .+ .... ...+ .+..++.++ .++.|..+|..+|+.+..+
T Consensus 140 ~~~~~-~~----------------------~i~s---sP~v--~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 140 DQVPP-GY----------------------TMTG---APTI--VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred CCcCc-ce----------------------EecC---CCEE--ECCEEEEeccccccccCCCCcEEEEEECCCCceeeEe
Confidence 11000 00 0000 0111 123444443 4678999999999988776
Q ss_pred ecCCC--------------------cee-EEEEcC-CCEEEEEeCCC------------------cEEEEeCcccCCCcc
Q 012007 274 NAHDD--------------------AIN-SVVAGF-DSLVFTGSADG------------------TVKVWRRELQGKGTK 313 (473)
Q Consensus 274 ~~~~~--------------------~v~-~l~~~~-~~~l~s~~~dg------------------~i~vwd~~~~~~~~~ 313 (473)
+.... .+. ...+.+ .+.++.++.++ .|.-+|..+++. .
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~--~ 269 (488)
T cd00216 192 YTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV--K 269 (488)
T ss_pred eccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE--E
Confidence 54211 011 123332 35778787665 677778765442 1
Q ss_pred eeeeeeeccCC--------cc-EEEEEEccCCC---EEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEE
Q 012007 314 HCLAQVLLKHE--------NA-VTALAVNQESA---VVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVF 381 (473)
Q Consensus 314 ~~~~~~~~~~~--------~~-v~~l~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 381 (473)
.... ...+. .+ +..+. .-++. .+++++.+|.+..+|.+++...-...... ..++.+...++
T Consensus 270 W~~~--~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~----~~~~~~~~~vy 342 (488)
T cd00216 270 WFYQ--TTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE----QPMAYDPGLVY 342 (488)
T ss_pred EEee--CCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec----cccccCCceEE
Confidence 1111 11111 11 11111 01332 68888999999999998876543222110 01111223333
Q ss_pred EE------------------eCCCcEEEEecCCCCceeEEEEecCC--C------Cce--eEEEEecCCCCCcccccCCC
Q 012007 382 SG------------------SADRNICLWRREESGAHSCLAVLTGH--T------GPV--KCLAVEEDRDHDHEYHQKGD 433 (473)
Q Consensus 382 s~------------------~~dg~i~iwd~~~~~~~~~~~~~~~h--~------~~V--~~l~~~~~~~~~~~~~~~~~ 433 (473)
.+ ..+|.|.-.|+.+++ .+-..... . .+. ..++.. +.
T Consensus 343 v~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~---~~W~~~~~~~~~~~~~g~~~~~~~~~~~--g~---------- 407 (488)
T cd00216 343 LGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK---VVWEKREGTIRDSWNIGFPHWGGSLATA--GN---------- 407 (488)
T ss_pred EccccccccCcccccCCCCCCCceEEEEEeCCCCc---EeeEeeCCccccccccCCcccCcceEec--CC----------
Confidence 32 235667777777642 22222111 0 111 112222 22
Q ss_pred ccEEEEEeeCCCcEEEEEcCCCCCCccC
Q 012007 434 QRWTVYSGSLDKSVKVWRVSEHAPDLKG 461 (473)
Q Consensus 434 ~~~~l~s~s~Dg~v~iW~i~~~~~~~~~ 461 (473)
+|+.++.||.|+.+|..+++..++.
T Consensus 408 ---~v~~g~~dG~l~ald~~tG~~lW~~ 432 (488)
T cd00216 408 ---LVFAGAADGYFRAFDATTGKELWKF 432 (488)
T ss_pred ---eEEEECCCCeEEEEECCCCceeeEE
Confidence 6888889999999999998877663
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.011 Score=56.99 Aligned_cols=49 Identities=18% Similarity=0.384 Sum_probs=36.0
Q ss_pred cEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Q 012007 144 NIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRK 193 (473)
Q Consensus 144 ~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~ 193 (473)
.|+||+.. +.+..+.-..+.|.++.|+.+. .|+.-..||.++++|+...
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCc
Confidence 48888854 4444444444899999998865 5556679999999998643
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0059 Score=53.87 Aligned_cols=201 Identities=13% Similarity=0.099 Sum_probs=106.2
Q ss_pred ccCCeeEEEEcCCCC-EEEEEeCCCCEEEEEcCCCeeeEEeecC-CCceeEEEEcCCCEEEEEe-CCCcEEEEeCcccCC
Q 012007 234 HYDAVSCLSLNAEQG-LLYSGSWDKTLKVWRISDCKCLESINAH-DDAINSVVAGFDSLVFTGS-ADGTVKVWRRELQGK 310 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~v~~l~~~~~~~l~s~~-~dg~i~vwd~~~~~~ 310 (473)
-.+.++.|+|+|+.+ ++++....+.|..++. +|+.++.+... .+....|++..++.++... .++.+.++++.....
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTT 98 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----T
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccc
Confidence 445699999999755 6666677788888886 58888887644 3567888888777555554 588999998854322
Q ss_pred Ccceeee-----eeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCC---ccccc-cee------ecCcceEEEEEe
Q 012007 311 GTKHCLA-----QVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEK---HLSHG-GVL------RGHKMAVLCLAA 375 (473)
Q Consensus 311 ~~~~~~~-----~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~-~~~------~~~~~~v~~~~~ 375 (473)
....... .....++..+..++|++.++.|+.+-...-..+|.+.. ..... ... .........++.
T Consensus 99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~ 178 (248)
T PF06977_consen 99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY 178 (248)
T ss_dssp T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEE
Confidence 1111111 11124567799999999887777777666666776543 11100 000 001112233333
Q ss_pred c---CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCC------CceeEEEEecCCCCCcccccCCCccEEEEEeeCCCc
Q 012007 376 A---GNLVFSGSADRNICLWRREESGAHSCLAVLTGHT------GPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKS 446 (473)
Q Consensus 376 ~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~------~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~ 446 (473)
+ +.+++.......|..+|... .....+....+.. ..--.|+|.+++. |+..++-+.
T Consensus 179 ~p~t~~lliLS~es~~l~~~d~~G-~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~--------------LYIvsEpNl 243 (248)
T PF06977_consen 179 DPRTGHLLILSDESRLLLELDRQG-RVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN--------------LYIVSEPNL 243 (248)
T ss_dssp ETTTTEEEEEETTTTEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT----------------EEEEETTTE
T ss_pred cCCCCeEEEEECCCCeEEEECCCC-CEEEEEEeCCcccCcccccCCccEEEECCCCC--------------EEEEcCCce
Confidence 3 66788888888999999543 2222222222211 2457899999986 555556665
Q ss_pred EEEE
Q 012007 447 VKVW 450 (473)
Q Consensus 447 v~iW 450 (473)
.+++
T Consensus 244 fy~f 247 (248)
T PF06977_consen 244 FYRF 247 (248)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5544
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00031 Score=69.49 Aligned_cols=108 Identities=14% Similarity=0.140 Sum_probs=82.1
Q ss_pred EEEEEeCCCCEEEEEeC----CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE
Q 012007 165 KAIIISGDSNKIFTGHQ----DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 165 ~~l~~s~~~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 240 (473)
+-..|+|...+++.++. .|.|-||-- +++...... -.-.+++
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfad-tGEPqr~Vt---------------------------------~P~hatS 64 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFAD-TGEPQRDVT---------------------------------YPVHATS 64 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEec-CCCCCcccc---------------------------------cceehhh
Confidence 44568888888887764 477777732 332111000 1123567
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCc
Q 012007 241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRE 306 (473)
Q Consensus 241 l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~ 306 (473)
++|+|..-.|+.|-.-|.+.+|...+.+.......|..+|..+.|+++| .++++..-|.+.+|...
T Consensus 65 LCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 65 LCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 9999998889999999999999988877766677899999999999998 89999999999999876
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0012 Score=49.29 Aligned_cols=101 Identities=26% Similarity=0.312 Sum_probs=70.2
Q ss_pred eeEEEEcC---C-CCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcc
Q 012007 238 VSCLSLNA---E-QGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTK 313 (473)
Q Consensus 238 v~~l~~~~---~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 313 (473)
|++|++.. + .+.|++|+.|..|++|+ ..+.+.++.. .+.|.+++....+.++.+..+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~------ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQ------ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCcc------
Confidence 45666554 2 26899999999999997 4466777764 4568888877778999999999999998531
Q ss_pred eeeeeeeccCCccEEEEEEcc-C--C-CEEEEeCCCCcEEE
Q 012007 314 HCLAQVLLKHENAVTALAVNQ-E--S-AVVYCGSSDGLVNF 350 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~-~--~-~~l~~~~~dg~i~i 350 (473)
.......+..++++++.. + | .-|++|-.+|.|-+
T Consensus 73 ---RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 73 ---RLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ---eeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 111112334466666544 2 2 46889989998753
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0026 Score=61.29 Aligned_cols=219 Identities=12% Similarity=0.111 Sum_probs=104.3
Q ss_pred EEEEecCCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccc
Q 012007 127 YSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPT 206 (473)
Q Consensus 127 ~~~~~~g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 206 (473)
.+.+|+|+++++++ ||.-.|+....... ...+.-...+|.+.+ .+|+-...+.|.|+.--.........
T Consensus 38 ls~npngr~v~V~g-~geY~iyt~~~~r~---k~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~------ 106 (443)
T PF04053_consen 38 LSHNPNGRFVLVCG-DGEYEIYTALAWRN---KAFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIK------ 106 (443)
T ss_dssp EEE-TTSSEEEEEE-TTEEEEEETTTTEE---EEEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT----------
T ss_pred EEECCCCCEEEEEc-CCEEEEEEccCCcc---cccCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEc------
Confidence 35667899988855 67778877322111 123556678898855 56666778889996322221111111
Q ss_pred cceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEc
Q 012007 207 FKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAG 286 (473)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~ 286 (473)
....+..|-. |.+|...+.+ .|.+||+.+++.++.+... .|..+.|+
T Consensus 107 ---------------------------~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws 153 (443)
T PF04053_consen 107 ---------------------------LPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWS 153 (443)
T ss_dssp ----------------------------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-
T ss_pred ---------------------------CCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEE
Confidence 1112333322 7777777654 8999999999999999754 48999999
Q ss_pred CCCEEEEEeCCCcEEEEeCccc------CCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccc
Q 012007 287 FDSLVFTGSADGTVKVWRRELQ------GKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHG 360 (473)
Q Consensus 287 ~~~~l~s~~~dg~i~vwd~~~~------~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 360 (473)
+++.+++-..+..+.+++.... ..+. .........-...|.+.+|..+ -++++ +.. .|+.+ -.+....
T Consensus 154 ~~g~~val~t~~~i~il~~~~~~~~~~~~~g~-e~~f~~~~E~~~~IkSg~W~~d-~fiYt-T~~-~lkYl--~~Ge~~~ 227 (443)
T PF04053_consen 154 DDGELVALVTKDSIYILKYNLEAVAAIPEEGV-EDAFELIHEISERIKSGCWVED-CFIYT-TSN-HLKYL--VNGETGI 227 (443)
T ss_dssp TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB--GGGEEEEEEE-S--SEEEEETT-EEEEE--TT-EEEEE--ETTEEEE
T ss_pred CCCCEEEEEeCCeEEEEEecchhcccccccCc-hhceEEEEEecceeEEEEEEcC-EEEEE-cCC-eEEEE--EcCCcce
Confidence 9984443344667888876532 0000 0011122222566778888765 33333 333 55552 2211110
Q ss_pred ceeecCcceEEEEEecCCEEEEEeCCCcEEEEecC
Q 012007 361 GVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRRE 395 (473)
Q Consensus 361 ~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~ 395 (473)
-........+....+..+.++....|+.|..+.+.
T Consensus 228 i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 228 IAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EEEcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 01111223334444445677777777777777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.032 Score=53.82 Aligned_cols=107 Identities=9% Similarity=0.086 Sum_probs=74.7
Q ss_pred eeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEec
Q 012007 315 CLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRR 394 (473)
Q Consensus 315 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~ 394 (473)
............|.+++++|+...|+.|+.||.|.+||...+.... ....-.....++.|+|.++++|+..|.+.+||+
T Consensus 250 rvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~-~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 250 RVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL-AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred EEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee-eeecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 3344455778899999999999999999999999999987653321 111222344667778999999999999999998
Q ss_pred CCCCc----------ee---EEEEecCCCCceeEEEEecCC
Q 012007 395 EESGA----------HS---CLAVLTGHTGPVKCLAVEEDR 422 (473)
Q Consensus 395 ~~~~~----------~~---~~~~~~~h~~~V~~l~~~~~~ 422 (473)
.-... .. .+..+-.+...+..+.|.+..
T Consensus 329 ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~ 369 (545)
T PF11768_consen 329 ALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAP 369 (545)
T ss_pred ecCccceeeccccCCCccEEeeehhccCcchhheeEeccCC
Confidence 64210 01 111222345567888998543
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.021 Score=51.98 Aligned_cols=225 Identities=12% Similarity=0.154 Sum_probs=121.6
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEE
Q 012007 171 GDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLL 250 (473)
Q Consensus 171 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l 250 (473)
..++.|+.|..+| |.++++......... .+...|..+...++-+.|
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i---------------------------------~~~~~I~ql~vl~~~~~l 50 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI---------------------------------LKLSSITQLSVLPELNLL 50 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeE---------------------------------eecceEEEEEEecccCEE
Confidence 3567999999998 889988222111111 133448889999988877
Q ss_pred EEEeCCCCEEEEEcCCCeeeEEe--------------ecCCCceeEEE--EcCC-CEEEEEeCCCcEEEEeCcccCCCcc
Q 012007 251 YSGSWDKTLKVWRISDCKCLESI--------------NAHDDAINSVV--AGFD-SLVFTGSADGTVKVWRRELQGKGTK 313 (473)
Q Consensus 251 ~s~s~dg~v~vwd~~~~~~~~~~--------------~~~~~~v~~l~--~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~ 313 (473)
++-+ |+.+.++++......... ......+...+ -... ...+.......|.+|..........
T Consensus 51 lvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~ 129 (275)
T PF00780_consen 51 LVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS 129 (275)
T ss_pred EEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc
Confidence 7776 599999998764433311 01122333333 1122 2444555566999998764211110
Q ss_pred eeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeec------------CcceEEEEEec-CCEE
Q 012007 314 HCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRG------------HKMAVLCLAAA-GNLV 380 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------~~~~v~~~~~~-~~~l 380 (473)
..... ..-...+..++|. ++.++.|..++ ..+.|+.++... ..... ...++..+..+ +.+|
T Consensus 130 -~~~ke-~~lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L 203 (275)
T PF00780_consen 130 -KLLKE-ISLPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPS-ELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFL 203 (275)
T ss_pred -ceeEE-EEcCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCce-EEeCccCCcchhhhcccCCCceEEEEeCCceEE
Confidence 11122 2234778889998 55677776544 777888753221 11110 11223333333 5555
Q ss_pred EEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 381 FSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 381 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
++- |..-.+.|..........-.+ .....++++... +|+..+. +.|.||++.+++.
T Consensus 204 l~~--~~~g~fv~~~G~~~r~~~i~W---~~~p~~~~~~~p---------------yli~~~~-~~iEV~~~~~~~l 259 (275)
T PF00780_consen 204 LCY--DNIGVFVNKNGEPSRKSTIQW---SSAPQSVAYSSP---------------YLIAFSS-NSIEVRSLETGEL 259 (275)
T ss_pred EEe--cceEEEEcCCCCcCcccEEEc---CCchhEEEEECC---------------EEEEECC-CEEEEEECcCCcE
Confidence 543 333444454431111111222 234556666443 5666655 4599999999853
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.3e-05 Score=64.08 Aligned_cols=142 Identities=20% Similarity=0.187 Sum_probs=89.4
Q ss_pred EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcce
Q 012007 290 LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMA 369 (473)
Q Consensus 290 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 369 (473)
.+..-+.||.|+-++++.... .......+... ...-.-+..+++|+.+|.|.+|.....-........-...
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~-----s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~ 103 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKE-----SCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEES 103 (238)
T ss_pred hhccccCCcccccchhhhhhh-----hhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhccccc
Confidence 455667888888888763211 11111111111 1122234678999999999999876322222222223334
Q ss_pred EEEEEec---CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCC-CceeEEEEecCCCCCcccccCCCccEEEEEe--eC
Q 012007 370 VLCLAAA---GNLVFSGSADRNICLWRREESGAHSCLAVLTGHT-GPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG--SL 443 (473)
Q Consensus 370 v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~--s~ 443 (473)
+.+.-|. +.+..+++.||.|+.|++.- .+.+.....|+ .++..+.....++ +++.+ |.
T Consensus 104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p---~k~~g~~g~h~~~~~e~~ivv~sd~-------------~i~~a~~S~ 167 (238)
T KOG2444|consen 104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKP---NKVLGYVGQHNFESGEELIVVGSDE-------------FLKIADTSH 167 (238)
T ss_pred ceeccccccccceeEEeccCCceeeecccc---CceeeeeccccCCCcceeEEecCCc-------------eEEeecccc
Confidence 4454443 56889999999999999887 56666666676 5666666666655 67777 88
Q ss_pred CCcEEEEEcCCC
Q 012007 444 DKSVKVWRVSEH 455 (473)
Q Consensus 444 Dg~v~iW~i~~~ 455 (473)
|..++.|++...
T Consensus 168 d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 168 DRVLKKWNVEKI 179 (238)
T ss_pred chhhhhcchhhh
Confidence 888999988754
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0034 Score=61.76 Aligned_cols=152 Identities=11% Similarity=0.052 Sum_probs=87.4
Q ss_pred CeeEEEEcCCCCEEEEEeCCC----CEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCC
Q 012007 237 AVSCLSLNAEQGLLYSGSWDK----TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg----~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
...-+.++++|+++++.+.+. ++...+..+...+..+... .+. .+.+++ +... .++.|.+.|.+...+.
T Consensus 236 npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~--~ie--a~vkdGK~~~V--~gn~V~VID~~t~~~~ 309 (635)
T PRK02888 236 NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA--RIE--EAVKAGKFKTI--GGSKVPVVDGRKAANA 309 (635)
T ss_pred CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH--HHH--HhhhCCCEEEE--CCCEEEEEECCccccC
Confidence 344578899999998886422 2333332222211111110 000 122344 3332 3678999998741100
Q ss_pred cceeeeeeeccCCccEEEEEEccCCCEEEEeC-CCCcEEEEecCCccc------------ccceeecCcceEEEEEecCC
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQESAVVYCGS-SDGLVNFWECEKHLS------------HGGVLRGHKMAVLCLAAAGN 378 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~------------~~~~~~~~~~~v~~~~~~~~ 378 (473)
.. .......-......+.++|||+++++++ .+.+|.|+|+.+... ......+-.-..+.|..+|+
T Consensus 310 -~~-~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~ 387 (635)
T PRK02888 310 -GS-ALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGN 387 (635)
T ss_pred -Cc-ceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCC
Confidence 11 1222223345678899999999877665 488999999986432 11111222223466666788
Q ss_pred EEEEEeCCCcEEEEecCC
Q 012007 379 LVFSGSADRNICLWRREE 396 (473)
Q Consensus 379 ~l~s~~~dg~i~iwd~~~ 396 (473)
...+-.-|..|..|++..
T Consensus 388 aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 388 AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEeEeecceeEEEehHH
Confidence 888888999999999875
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.022 Score=56.51 Aligned_cols=238 Identities=16% Similarity=0.126 Sum_probs=121.2
Q ss_pred CEEEEeeCCCcEEEeeCCc--cccccccCcc-----cE-EEEEEeCCCCEEEEEe---------CCCeEEEEeCCCCCee
Q 012007 134 DLLYTGSDSKNIRVWKNLK--EFSGFKSNSG-----LV-KAIIISGDSNKIFTGH---------QDGKIRIWKVSRKNAS 196 (473)
Q Consensus 134 ~~l~tg~~dg~i~vwd~~~--~~~~~~~h~~-----~V-~~l~~s~~~~~l~s~~---------~dg~i~vwd~~~~~~~ 196 (473)
..++.++.+|.|.-+|... .+-.+..... .+ ....+. + ..++.++ .+|.|...|..+++..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 6777777788888887542 2222211111 01 111222 2 3455543 4678999999998876
Q ss_pred eEEeeccccccceeEeecCCCcceEEEeecceeeEeecc-CCe-eEEEEcCCCCEEEEEeCCC-----------------
Q 012007 197 VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY-DAV-SCLSLNAEQGLLYSGSWDK----------------- 257 (473)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v-~~l~~~~~~~~l~s~s~dg----------------- 257 (473)
-........... ... ... ......+. ..+ ...++.+.+..++.++.++
T Consensus 189 W~~~~~~~~~~~--~~~-~~~----------~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~ 255 (488)
T cd00216 189 WRFYTTEPDPNA--FPT-WGP----------DRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYT 255 (488)
T ss_pred eEeeccCCCcCC--CCC-CCC----------CcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCce
Confidence 655442110000 000 000 00000010 111 1244555567777777655
Q ss_pred -CEEEEEcCCCeeeEEeecCCCcee--------EEE-Ec-CCC----EEEEEeCCCcEEEEeCcccCCCcceeeeeeecc
Q 012007 258 -TLKVWRISDCKCLESINAHDDAIN--------SVV-AG-FDS----LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLK 322 (473)
Q Consensus 258 -~v~vwd~~~~~~~~~~~~~~~~v~--------~l~-~~-~~~----~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 322 (473)
.|.-+|..+|+.+..++.-..... .+. .. -++ .++.++.+|.+...|.++++..-.... .
T Consensus 256 ~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~--~--- 330 (488)
T cd00216 256 DSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPE--V--- 330 (488)
T ss_pred eeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEe--e---
Confidence 799999999999887653211111 111 00 112 578888999999999886542111110 0
Q ss_pred CCccEEEEEEccCCCEEEEe------------------CCCCcEEEEecCCcccccceeec-C--------cceEEEEEe
Q 012007 323 HENAVTALAVNQESAVVYCG------------------SSDGLVNFWECEKHLSHGGVLRG-H--------KMAVLCLAA 375 (473)
Q Consensus 323 ~~~~v~~l~~~~~~~~l~~~------------------~~dg~i~iwd~~~~~~~~~~~~~-~--------~~~v~~~~~ 375 (473)
...++.+| ..++.+ ..+|.|.-.|+.+++..-....+ + ......+..
T Consensus 331 ----~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~ 404 (488)
T cd00216 331 ----EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT 404 (488)
T ss_pred ----ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe
Confidence 01122233 222221 23566777777665433222111 0 001122345
Q ss_pred cCCEEEEEeCCCcEEEEecCCC
Q 012007 376 AGNLVFSGSADRNICLWRREES 397 (473)
Q Consensus 376 ~~~~l~s~~~dg~i~iwd~~~~ 397 (473)
.+.+|++++.||.|+.+|..++
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG 426 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTG 426 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCC
Confidence 6789999999999999999984
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0093 Score=57.59 Aligned_cols=223 Identities=9% Similarity=0.083 Sum_probs=109.8
Q ss_pred CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 160 NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
..-....+.++|+|++++.+ .||.-.|+........ ..+.-.
T Consensus 31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k-------------------------------------~~G~g~ 72 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNK-------------------------------------AFGSGL 72 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEE-------------------------------------EEEE-S
T ss_pred CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccc-------------------------------------ccCcee
Confidence 34457899999999999984 5667777773322211 223345
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeee
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQV 319 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 319 (473)
...|.+. +.+|+-...++|.|+.--+.+....++.. ..+..|.. |.++....++.|.+||+..+ ..+..
T Consensus 73 ~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~~i~~yDw~~~------~~i~~ 141 (443)
T PF04053_consen 73 SFVWSSR-NRYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSSDFICFYDWETG------KLIRR 141 (443)
T ss_dssp EEEE-TS-SEEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----SSSEEEEETTEEEEE-TTT--------EEEE
T ss_pred EEEEecC-ccEEEEECCCeEEEEEcCccccceEEcCC-cccceEEc---CcEEEEECCCCEEEEEhhHc------ceeeE
Confidence 6788884 45777777889999743232322234322 23444443 54444445558999999732 22333
Q ss_pred eccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCc---------cc-ccceeecCcceEEEEEecCCEEEEEeCCCcE
Q 012007 320 LLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH---------LS-HGGVLRGHKMAVLCLAAAGNLVFSGSADRNI 389 (473)
Q Consensus 320 ~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~---------~~-~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i 389 (473)
.. -.+|..+.|++++.+++..+.+ .+.|++.... .. .......-...|.+..|++..++-.+.. .|
T Consensus 142 i~--v~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~l 217 (443)
T PF04053_consen 142 ID--VSAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HL 217 (443)
T ss_dssp ES--S-E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EE
T ss_pred Ee--cCCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eE
Confidence 32 2248999999999999988765 6777765432 00 1111211134555666666644444433 55
Q ss_pred EEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 390 CLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 390 ~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
+. +.. +....+..+ ..++.=+...+... .++....|+.|..+.+..
T Consensus 218 kY--l~~-Ge~~~i~~l---d~~~yllgy~~~~~-------------~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 218 KY--LVN-GETGIIAHL---DKPLYLLGYLPKEN-------------RLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EE--EET-TEEEEEEE----SS--EEEEEETTTT-------------EEEEE-TT--EEEEE--H
T ss_pred EE--EEc-CCcceEEEc---CCceEEEEEEccCC-------------EEEEEECCCCEEEEEECH
Confidence 55 222 112333333 34566677777555 688888999999888763
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.031 Score=51.22 Aligned_cols=210 Identities=8% Similarity=0.022 Sum_probs=114.3
Q ss_pred EEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCee-eEEeeccccccceeEee
Q 012007 135 LLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNAS-VHKRVGSLPTFKDYVKS 213 (473)
Q Consensus 135 ~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~ 213 (473)
++.+--..+.|.-|+..........+.+.+.++..-..+..|+++... +.+++.+.+... ........
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~g--~~~~~~~~~~~~t~~~~~~~~--------- 107 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACEHG--VRLLDPDTGGKITLLAEPEDG--------- 107 (307)
T ss_pred EEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEccc--cEEEeccCCceeEEeccccCC---------
Confidence 455555667777777653333333344445666555555566665443 566777555432 11111000
Q ss_pred cCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC---------CCCEEEEEcC-CCeeeEEeecCCCceeEE
Q 012007 214 SVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW---------DKTLKVWRIS-DCKCLESINAHDDAINSV 283 (473)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~---------dg~v~vwd~~-~~~~~~~~~~~~~~v~~l 283 (473)
.-....+.+...|+|.+-++... ...=.+|.+. .+..++.+..+-..-+.|
T Consensus 108 -------------------~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGl 168 (307)
T COG3386 108 -------------------LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGL 168 (307)
T ss_pred -------------------CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCce
Confidence 01234456677777765444332 0112455544 566666666666777899
Q ss_pred EEcCCC-EEE-EEeCCCcEEEEeCcc-cCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC-cEEEEecCCcccc
Q 012007 284 VAGFDS-LVF-TGSADGTVKVWRREL-QGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG-LVNFWECEKHLSH 359 (473)
Q Consensus 284 ~~~~~~-~l~-s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~ 359 (473)
+|+|++ .++ +=+..+.|.-|++.. .................+..-.++...+|.+.+++..+| .|.+|+.. +...
T Consensus 169 a~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~ 247 (307)
T COG3386 169 AFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLL 247 (307)
T ss_pred EECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEE
Confidence 999999 444 444558888887762 111111121222323456666788888888776555554 89999988 4444
Q ss_pred cceeecCcceEEEEEec
Q 012007 360 GGVLRGHKMAVLCLAAA 376 (473)
Q Consensus 360 ~~~~~~~~~~v~~~~~~ 376 (473)
...... ...+.+.++-
T Consensus 248 ~~i~lP-~~~~t~~~Fg 263 (307)
T COG3386 248 GEIKLP-VKRPTNPAFG 263 (307)
T ss_pred EEEECC-CCCCccceEe
Confidence 333322 2344444443
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.073 Score=51.37 Aligned_cols=180 Identities=8% Similarity=0.005 Sum_probs=89.6
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe------eeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccC
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK------CLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~------~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~ 309 (473)
+.|-++.|..+. .|++...||.++++|+.... .+.........+....+...|.++. ..++.+.+.+-....
T Consensus 81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL-t~~~~~~~v~n~~~~ 158 (410)
T PF04841_consen 81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVL-TGNNRFYVVNNIDEP 158 (410)
T ss_pred CCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCEEEE-CCCCeEEEEeCcccc
Confidence 678899998864 55566789999999986322 1111111122222333444564443 334444444221110
Q ss_pred CCcce--e-eeeee--ccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEe
Q 012007 310 KGTKH--C-LAQVL--LKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGS 384 (473)
Q Consensus 310 ~~~~~--~-~~~~~--~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~ 384 (473)
..... . +.... ..+........++.+....+....++.+.+.+-..... ........-++++|++++||.-.
T Consensus 159 ~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~t 235 (410)
T PF04841_consen 159 VKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALFT 235 (410)
T ss_pred chhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEEE
Confidence 00000 0 00000 00111101123444555555555566676554332111 11112334467788999999999
Q ss_pred CCCcEEEEecCCCCceeEEEEecCC-CCceeEEEEecCCC
Q 012007 385 ADRNICLWRREESGAHSCLAVLTGH-TGPVKCLAVEEDRD 423 (473)
Q Consensus 385 ~dg~i~iwd~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~ 423 (473)
.+|.+.+...+- .+.+..+.-. ......+.|.-+..
T Consensus 236 ~~g~l~v~ssDf---~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 236 DSGNLWVVSSDF---SEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred CCCCEEEEECcc---cceeEEeecCcCCCCcEEEEECCCc
Confidence 999999887654 2333333322 34567788877653
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.059 Score=50.33 Aligned_cols=188 Identities=13% Similarity=0.152 Sum_probs=104.0
Q ss_pred CCEEEEEeC----------CCCEEEEEcCCC----eeeEEe--ecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCC
Q 012007 247 QGLLYSGSW----------DKTLKVWRISDC----KCLESI--NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGK 310 (473)
Q Consensus 247 ~~~l~s~s~----------dg~v~vwd~~~~----~~~~~~--~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~ 310 (473)
..+|++|+. .|.|.++++... ..+..+ ....++|.+++.- ++.|++ +.++.|.+|++....
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~lv~-~~g~~l~v~~l~~~~- 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGRLVV-AVGNKLYVYDLDNSK- 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTEEEE-EETTEEEEEEEETTS-
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCEEEE-eecCEEEEEEccCcc-
Confidence 467777753 288999999884 122222 2347889999866 445443 345899999987432
Q ss_pred CcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCc-ccccce-eecCcceEEEEEe--cCCEEEEEeCC
Q 012007 311 GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH-LSHGGV-LRGHKMAVLCLAA--AGNLVFSGSAD 386 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~-~~~~~~~v~~~~~--~~~~l~s~~~d 386 (473)
.............++++... ++++++|.....+.++..+.. ...... .......+++..+ +++.++++..+
T Consensus 119 ---~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~ 193 (321)
T PF03178_consen 119 ---TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKD 193 (321)
T ss_dssp ---SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETT
T ss_pred ---cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCC
Confidence 11222222233466666665 558999988888888755431 111111 1122344555543 56799999999
Q ss_pred CcEEEEecCCC-----C---ceeEEEEecCCCCceeEE---EEecC--CCCCcccccCCCccEEEEEeeCCCcEEEE
Q 012007 387 RNICLWRREES-----G---AHSCLAVLTGHTGPVKCL---AVEED--RDHDHEYHQKGDQRWTVYSGSLDKSVKVW 450 (473)
Q Consensus 387 g~i~iwd~~~~-----~---~~~~~~~~~~h~~~V~~l---~~~~~--~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW 450 (473)
|.+.++..... . .......+. ....|+++ .+.|. .. .......++-++.+|.|.+.
T Consensus 194 gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~-------~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 194 GNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSS-------ESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS--------TTEEEEEEEEETTS-EEEE
T ss_pred CeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCC-------cccccceEEEEecCCEEEEE
Confidence 99999988631 1 122233332 23567777 55552 11 00012357788889998843
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.03 Score=49.48 Aligned_cols=203 Identities=8% Similarity=0.091 Sum_probs=103.6
Q ss_pred cccCcccEEEEEEeCCCCE-EEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeecc
Q 012007 157 FKSNSGLVKAIIISGDSNK-IFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY 235 (473)
Q Consensus 157 ~~~h~~~V~~l~~s~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (473)
+.+-...+..|+|.|+.+. +++....+.|...+.+ ++......+. -.
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~-------------------------------g~ 64 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLD-------------------------------GF 64 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-S-------------------------------S-
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCC-------------------------------CC
Confidence 3344456999999998664 5555667888777864 4544443332 23
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe------eeEEee-----cCCCceeEEEEcCCC-EEEEEeCCCcEEEE
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK------CLESIN-----AHDDAINSVVAGFDS-LVFTGSADGTVKVW 303 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~------~~~~~~-----~~~~~v~~l~~~~~~-~l~s~~~dg~i~vw 303 (473)
+....|++..++.++++--.++.+.++++.... ....+. .+...+-.++|.+.+ .|+++-...-..+|
T Consensus 65 ~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~ 144 (248)
T PF06977_consen 65 GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLY 144 (248)
T ss_dssp SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEE
T ss_pred CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhE
Confidence 456678887777666666568899999884321 112221 244568999998875 66677777777777
Q ss_pred eCcccCCCcceee--e---eeeccCCccEEEEEEccC-CCEEEEeCCCCcEEEEecCCcccccceeec---------Ccc
Q 012007 304 RRELQGKGTKHCL--A---QVLLKHENAVTALAVNQE-SAVVYCGSSDGLVNFWECEKHLSHGGVLRG---------HKM 368 (473)
Q Consensus 304 d~~~~~~~~~~~~--~---~~~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------~~~ 368 (473)
.+........... . .........+.+++++|. +.+++.+..+..|.++|..........+.. ...
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~Qp 224 (248)
T PF06977_consen 145 EVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQP 224 (248)
T ss_dssp EEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SE
T ss_pred EEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCc
Confidence 7653110000000 0 001223445789999995 567777778888888885543221112221 123
Q ss_pred eEEEEEecCCEEEEEeCCCcEEEE
Q 012007 369 AVLCLAAAGNLVFSGSADRNICLW 392 (473)
Q Consensus 369 ~v~~~~~~~~~l~s~~~dg~i~iw 392 (473)
.-.++.++|++.+++ +-+..++|
T Consensus 225 EGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 225 EGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp EEEEE-TT--EEEEE-TTTEEEEE
T ss_pred cEEEECCCCCEEEEc-CCceEEEe
Confidence 346677777555544 44444443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.046 Score=52.31 Aligned_cols=223 Identities=13% Similarity=0.124 Sum_probs=139.0
Q ss_pred EEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEE
Q 012007 164 VKAIIISGDSNKIFTG-HQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS 242 (473)
Q Consensus 164 V~~l~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 242 (473)
-..+++++.++.++.. ..++.|.+.|............+ .....++
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG---------------------------------~~P~~~~ 122 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG---------------------------------LGPVGLA 122 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec---------------------------------cCCceEE
Confidence 4577888888755544 44588999997666544433322 1456789
Q ss_pred EcCCCCEEEEEeC---CCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEE-EEeCCCcEEEEeCcccCCCcceeee
Q 012007 243 LNAEQGLLYSGSW---DKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF-TGSADGTVKVWRRELQGKGTKHCLA 317 (473)
Q Consensus 243 ~~~~~~~l~s~s~---dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~-s~~~dg~i~vwd~~~~~~~~~~~~~ 317 (473)
++++++.++++.. ++++.+.|-.+.+.+.....-..+ ..+++.|++ .++ +-..++.|.+.|........ ...
T Consensus 123 ~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~--~~~ 199 (381)
T COG3391 123 VDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR--GSV 199 (381)
T ss_pred ECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec--ccc
Confidence 9999988888876 688999999999888886654445 888999998 344 44478999999965322100 000
Q ss_pred eeeccCCccEEEEEEccCCCEEEEeCCC---CcEEEEecCCcccccceeecC--cceEEEEEecCCEEEEEeCC-CcEEE
Q 012007 318 QVLLKHENAVTALAVNQESAVVYCGSSD---GLVNFWECEKHLSHGGVLRGH--KMAVLCLAAAGNLVFSGSAD-RNICL 391 (473)
Q Consensus 318 ~~~~~~~~~v~~l~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~l~s~~~d-g~i~i 391 (473)
.....-......+.+++++.++++.... +.+...|..+........... ...-..+.|+|..+.+.... +.+.+
T Consensus 200 ~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 200 GSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred ccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 1112223344678999999876665443 588888887754433211111 22345677889988887444 78888
Q ss_pred EecCCCCceeEEEEecCCCCceeEEEEecCC
Q 012007 392 WRREESGAHSCLAVLTGHTGPVKCLAVEEDR 422 (473)
Q Consensus 392 wd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 422 (473)
.|..+............-...+..+++.+..
T Consensus 280 id~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 280 IDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred EeCCCCceeeeecccccccccceeccceeec
Confidence 8887732222222222222235555555543
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.045 Score=51.86 Aligned_cols=52 Identities=8% Similarity=0.065 Sum_probs=37.2
Q ss_pred CCcEEEeeCCcc-ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC
Q 012007 142 SKNIRVWKNLKE-FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKN 194 (473)
Q Consensus 142 dg~i~vwd~~~~-~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~ 194 (473)
.+.+.|||+... ...+......+....|+|+|++++-.. ++.|.+++..++.
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~ 74 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQ 74 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSE
T ss_pred ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCC
Confidence 356778887643 333333367899999999999998875 6789999987774
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0017 Score=61.18 Aligned_cols=139 Identities=22% Similarity=0.238 Sum_probs=95.1
Q ss_pred EEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--------EEEEEeCCCcEEEEeCcccCCCcceeeeeee
Q 012007 249 LLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--------LVFTGSADGTVKVWRRELQGKGTKHCLAQVL 320 (473)
Q Consensus 249 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--------~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 320 (473)
+|.++..-..|+-.|++.|+.+.+++.+.+ |+-+.+.|+. .-+.|-.|..|.-||.+..++. .+...
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~----kl~~~ 422 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN----KLAVV 422 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc----eeeee
Confidence 344555566788999999999999998877 7777777764 3456778899999999865432 11112
Q ss_pred ccC----CccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEE--EEEecCCEEEEEeCCCcEEEEec
Q 012007 321 LKH----ENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVL--CLAAAGNLVFSGSADRNICLWRR 394 (473)
Q Consensus 321 ~~~----~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~s~~~dg~i~iwd~ 394 (473)
..| .....|++-..+| ++++|+.+|.|++||- .+......+.+-..+|. .++.+|++|++.+ +.++.+.++
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 222 2334555555444 7889999999999997 44445556666666664 4567899888776 556777665
Q ss_pred C
Q 012007 395 E 395 (473)
Q Consensus 395 ~ 395 (473)
.
T Consensus 500 ~ 500 (644)
T KOG2395|consen 500 L 500 (644)
T ss_pred e
Confidence 4
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.088 Score=51.21 Aligned_cols=247 Identities=11% Similarity=0.120 Sum_probs=126.5
Q ss_pred ccEEEEEEeCCCCEEEEE-eCCC----eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccC
Q 012007 162 GLVKAIIISGDSNKIFTG-HQDG----KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYD 236 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~-~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (473)
-.+..+.++|+|++||-+ +..| .|++.|+.+++...... ...
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i---------------------------------~~~ 170 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI---------------------------------ENP 170 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE---------------------------------EEE
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc---------------------------------ccc
Confidence 345578899999988855 3444 49999999985433221 111
Q ss_pred CeeEEEEcCCCCEEEEEeCCC-----------CEEEEEcCCCeee--EEeecCCCc--eeEEEEcCCC-EEE-EEeCC--
Q 012007 237 AVSCLSLNAEQGLLYSGSWDK-----------TLKVWRISDCKCL--ESINAHDDA--INSVVAGFDS-LVF-TGSAD-- 297 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg-----------~v~vwd~~~~~~~--~~~~~~~~~--v~~l~~~~~~-~l~-s~~~d-- 297 (473)
....+.|.++++.|+-...+. .|+.|.+.+...- ..+...... ...+..++++ +++ .....
T Consensus 171 ~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~ 250 (414)
T PF02897_consen 171 KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS 250 (414)
T ss_dssp ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS
T ss_pred ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc
Confidence 122389999988766655333 3788888765332 333333332 5567778887 333 33332
Q ss_pred -CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC---CCCcEEEEecCCccc--ccceeecCcc--e
Q 012007 298 -GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS---SDGLVNFWECEKHLS--HGGVLRGHKM--A 369 (473)
Q Consensus 298 -g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~---~dg~i~iwd~~~~~~--~~~~~~~~~~--~ 369 (473)
..+.+.++.... ........+......+....-+.++.+++... .++.|...++..... ....+..+.. .
T Consensus 251 ~s~v~~~d~~~~~--~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~ 328 (414)
T PF02897_consen 251 ESEVYLLDLDDGG--SPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVS 328 (414)
T ss_dssp EEEEEEEECCCTT--TSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEE
T ss_pred CCeEEEEeccccC--CCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCcee
Confidence 346666765321 00111222233333343333333444444432 245677777776442 1224444443 5
Q ss_pred EEEEEecCCEEEEEe-CCC--cEEEEecC-CCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeC--
Q 012007 370 VLCLAAAGNLVFSGS-ADR--NICLWRRE-ESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSL-- 443 (473)
Q Consensus 370 v~~~~~~~~~l~s~~-~dg--~i~iwd~~-~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~-- 443 (473)
+..+...+++|+... .++ .|+++++. + .........-.+.|..+...++... .+|...|.
T Consensus 329 l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~---~~~~~~~~p~~g~v~~~~~~~~~~~-----------~~~~~ss~~~ 394 (414)
T PF02897_consen 329 LEDVSLFKDYLVLSYRENGSSRLRVYDLDDG---KESREIPLPEAGSVSGVSGDFDSDE-----------LRFSYSSFTT 394 (414)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEEETT-T---EEEEEEESSSSSEEEEEES-TT-SE-----------EEEEEEETTE
T ss_pred EEEEEEECCEEEEEEEECCccEEEEEECCCC---cEEeeecCCcceEEeccCCCCCCCE-----------EEEEEeCCCC
Confidence 667777666655544 443 58888888 4 2333332223445666555554432 23333332
Q ss_pred CCcEEEEEcCCCCC
Q 012007 444 DKSVKVWRVSEHAP 457 (473)
Q Consensus 444 Dg~v~iW~i~~~~~ 457 (473)
-++|..||+.+++.
T Consensus 395 P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 395 PPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEEEEETTTTCE
T ss_pred CCEEEEEECCCCCE
Confidence 35677788777653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.011 Score=58.33 Aligned_cols=180 Identities=9% Similarity=0.049 Sum_probs=108.9
Q ss_pred EEcCCCCEEEEE-eCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCC----CcEEEEeCcccCCCccee
Q 012007 242 SLNAEQGLLYSG-SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSAD----GTVKVWRRELQGKGTKHC 315 (473)
Q Consensus 242 ~~~~~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~d----g~i~vwd~~~~~~~~~~~ 315 (473)
=+.+||+.+... -..+.+.+.|.++.+....+.... ....+.+++++ ++++.+.+ ..+..-+..
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~--------- 268 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAA--------- 268 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccc---------
Confidence 355677655433 345668888988877777665433 33556777777 55555422 122222221
Q ss_pred eeeeeccCCccEEEE------EEccCCCEEEEeCCCCcEEEEecCC----c-ccccceeecCcceEEEEEecCCEEEEEe
Q 012007 316 LAQVLLKHENAVTAL------AVNQESAVVYCGSSDGLVNFWECEK----H-LSHGGVLRGHKMAVLCLAAAGNLVFSGS 384 (473)
Q Consensus 316 ~~~~~~~~~~~v~~l------~~~~~~~~l~~~~~dg~i~iwd~~~----~-~~~~~~~~~~~~~v~~~~~~~~~l~s~~ 384 (473)
....+..+ ++.++|++...+ ++.|.+.|.++ . .....+..+....-+.++|||+++++++
T Consensus 269 -------e~d~~vvfni~~iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVan 339 (635)
T PRK02888 269 -------ERDWVVVFNIARIEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANG 339 (635)
T ss_pred -------cCceEEEEchHHHHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeC
Confidence 01111111 334577777663 67899999887 2 2333334444445578899999877765
Q ss_pred -CCCcEEEEecCCCCc---------eeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 385 -ADRNICLWRREESGA---------HSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 385 -~dg~i~iwd~~~~~~---------~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
.+.+|.|.|+.+... ...+....- ...-...+|.+++. ...|--.|..|-.|++..
T Consensus 340 klS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~-------------aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 340 KLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGN-------------AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCC-------------EEEeEeecceeEEEehHH
Confidence 488999999987321 111222222 22235678888876 788888899999999986
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.016 Score=43.36 Aligned_cols=99 Identities=21% Similarity=0.287 Sum_probs=66.6
Q ss_pred EEEEEEeC---CC-CEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 164 VKAIIISG---DS-NKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 164 V~~l~~s~---~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
|++|++.. || +.|++|+.|..||+|+-+.- .... ...+.|.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~--~~Ei---------------------------------~e~~~v~ 46 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI--VAEI---------------------------------TETDKVT 46 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE--EEEE---------------------------------ecccceE
Confidence 66777654 33 68999999999999985421 1111 2556788
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEc-CC--C--EEEEEeCCCcEE
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAG-FD--S--LVFTGSADGTVK 301 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~-~~--~--~l~s~~~dg~i~ 301 (473)
+|.-... ..++-+..+|+|-+|+- .+.+..++... .+.++.+. .+ + .|++|-.+|.|-
T Consensus 47 ~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 47 SLCSLGG-GRFAYALANGTVGVYDR--SQRLWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEcCC-CEEEEEecCCEEEEEeC--cceeeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 8877665 67888999999999975 33444454333 35666543 33 3 788998888874
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00028 Score=41.63 Aligned_cols=38 Identities=39% Similarity=0.642 Sum_probs=33.3
Q ss_pred eEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 401 SCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 401 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
.++..+..|...|.++.|.+... ++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~-------------~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGK-------------YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCC-------------EEEEecCCCeEEEcC
Confidence 45666778899999999999887 899999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.058 Score=46.61 Aligned_cols=100 Identities=13% Similarity=0.199 Sum_probs=70.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEE
Q 012007 173 SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYS 252 (473)
Q Consensus 173 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s 252 (473)
..+++.|+..+.+..-|..+++....... ...|.+-+.- -|++++.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il---------------------------------g~RiE~sa~v-vgdfVV~ 68 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL---------------------------------GVRIECSAIV-VGDFVVL 68 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh---------------------------------CceeeeeeEE-ECCEEEE
Confidence 35778888888888888888876544332 2223222222 4678999
Q ss_pred EeCCCCEEEEEcCCCeeeEEeecCCC-ceeEEEEcCC-CEEEEEeCCCcEEEEeCcc
Q 012007 253 GSWDKTLKVWRISDCKCLESINAHDD-AINSVVAGFD-SLVFTGSADGTVKVWRREL 307 (473)
Q Consensus 253 ~s~dg~v~vwd~~~~~~~~~~~~~~~-~v~~l~~~~~-~~l~s~~~dg~i~vwd~~~ 307 (473)
|...|.+++.+.++|.....+..-+. .+.. ...++ +++..|+.|+..+..|.+.
T Consensus 69 GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a-~~d~~~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 69 GCYSGGLYFLCVKTGSQIWNFVILETVKVRA-QCDFDGGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred EEccCcEEEEEecchhheeeeeehhhhccce-EEcCCCceEEEecCCCcEEEecccc
Confidence 99999999999999988777664332 2222 23444 5999999999999999873
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.096 Score=48.04 Aligned_cols=209 Identities=12% Similarity=0.093 Sum_probs=116.4
Q ss_pred EEeCCCCE-EEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC
Q 012007 168 IISGDSNK-IFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE 246 (473)
Q Consensus 168 ~~s~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 246 (473)
.|.++... +.+--..+.|.-|+..+++..... +.+.+.++..-..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~----------------------------------~p~~~~~~~~~d~ 76 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFP----------------------------------SPGGFSSGALIDA 76 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE----------------------------------CCCCcccceeecC
Confidence 35555553 444445677888887755432221 3344455555455
Q ss_pred CCEEEEEeCCCCEEEEEcCCCeeeEEeec-----CCCceeEEEEcCCCEEEEEeCCC----------cEEEEeCcccCCC
Q 012007 247 QGLLYSGSWDKTLKVWRISDCKCLESINA-----HDDAINSVVAGFDSLVFTGSADG----------TVKVWRRELQGKG 311 (473)
Q Consensus 247 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-----~~~~v~~l~~~~~~~l~s~~~dg----------~i~vwd~~~~~~~ 311 (473)
+..|+++. .-+.+++..++..+..+.. .....+.+...+++.+..+.... .-.+|.+...
T Consensus 77 ~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~--- 151 (307)
T COG3386 77 GGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD--- 151 (307)
T ss_pred CCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC---
Confidence 55565554 3467777766555333221 22456677888888666665541 1134433311
Q ss_pred cceeeeeeeccCCccEEEEEEccCCCEEEEeCC-CCcEEEEecCC--ccccc---ceee-cCcce--EEEEEecCCEEEE
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-DGLVNFWECEK--HLSHG---GVLR-GHKMA--VLCLAAAGNLVFS 382 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~iwd~~~--~~~~~---~~~~-~~~~~--v~~~~~~~~~l~s 382 (473)
.........+-..-+.|+|+||++.|+.... .+.|.-|++.. ..... .... ...+. -.++.-+|.+.++
T Consensus 152 --g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~ 229 (307)
T COG3386 152 --GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVA 229 (307)
T ss_pred --CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEe
Confidence 1122233333445578999999988777755 47888887752 11110 0111 11111 2555666777765
Q ss_pred EeCCC-cEEEEecCCCCceeEEEEecCCCCceeEEEEecC
Q 012007 383 GSADR-NICLWRREESGAHSCLAVLTGHTGPVKCLAVEED 421 (473)
Q Consensus 383 ~~~dg-~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 421 (473)
+..+| .|.+|+.+. +++..+.-....+++++|--.
T Consensus 230 a~~~g~~v~~~~pdG----~l~~~i~lP~~~~t~~~FgG~ 265 (307)
T COG3386 230 AVWGGGRVVRFNPDG----KLLGEIKLPVKRPTNPAFGGP 265 (307)
T ss_pred cccCCceEEEECCCC----cEEEEEECCCCCCccceEeCC
Confidence 55554 899998873 455555555577888998764
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.027 Score=53.37 Aligned_cols=238 Identities=12% Similarity=0.056 Sum_probs=119.5
Q ss_pred eCCCCEEEEEe---------CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE
Q 012007 170 SGDSNKIFTGH---------QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 170 s~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 240 (473)
|||+++++... ..+.+.|||+.+++...... ....+..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~---------------------------------~~~~~~~ 47 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP---------------------------------PPPKLQD 47 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS----------------------------------EETTBSE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC---------------------------------Ccccccc
Confidence 57777776642 23568888988865332221 2456788
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecC-----------------CCceeEEEEcCCC-EEE-EEeCCCcEE
Q 012007 241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH-----------------DDAINSVVAGFDS-LVF-TGSADGTVK 301 (473)
Q Consensus 241 l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-----------------~~~v~~l~~~~~~-~l~-s~~~dg~i~ 301 (473)
..|+|+|+.++-.. ++.|.++++.+++..+.-... -+.-..+.|+|++ .|+ .--.+..|+
T Consensus 48 ~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~ 126 (353)
T PF00930_consen 48 AKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVP 126 (353)
T ss_dssp EEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-
T ss_pred ceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCc
Confidence 99999999998887 578999998777544322111 1123567899987 333 333344444
Q ss_pred EEeCcccCCCc-------------------------------ceeeee---eeccCCccEEEEEEccCCCEEEEe--CCC
Q 012007 302 VWRRELQGKGT-------------------------------KHCLAQ---VLLKHENAVTALAVNQESAVVYCG--SSD 345 (473)
Q Consensus 302 vwd~~~~~~~~-------------------------------~~~~~~---~~~~~~~~v~~l~~~~~~~~l~~~--~~d 345 (473)
.+.+-...... ...... ........+..+.|.+++..|+.. ..+
T Consensus 127 ~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~ 206 (353)
T PF00930_consen 127 EYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRD 206 (353)
T ss_dssp EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETT
T ss_pred eEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccC
Confidence 33321110000 000000 012234557888899888734332 222
Q ss_pred C---cEEEEecCCcccccceeecCcce-----EEEEE-ec-CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeE
Q 012007 346 G---LVNFWECEKHLSHGGVLRGHKMA-----VLCLA-AA-GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKC 415 (473)
Q Consensus 346 g---~i~iwd~~~~~~~~~~~~~~~~~-----v~~~~-~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~ 415 (473)
. .+.++|..++............. ...+. ++ +.+|.....||.-+||-+...+ .....+....-.|+.
T Consensus 207 q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~--~~~~~lT~G~~~V~~ 284 (353)
T PF00930_consen 207 QNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDG--GKPRQLTSGDWEVTS 284 (353)
T ss_dssp STEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTS--SEEEESS-SSS-EEE
T ss_pred CCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccc--cceeccccCceeecc
Confidence 2 35566765533221111111111 23333 34 4566666678766555554321 223355544556755
Q ss_pred -EEEecCCCCCcccccCCCccEEEEEeeCC--CcEEEEEcCCC
Q 012007 416 -LAVEEDRDHDHEYHQKGDQRWTVYSGSLD--KSVKVWRVSEH 455 (473)
Q Consensus 416 -l~~~~~~~~~~~~~~~~~~~~~l~s~s~D--g~v~iW~i~~~ 455 (473)
+.|++++.. +++++..+ +.-.+|.+.-.
T Consensus 285 i~~~d~~~~~------------iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 285 ILGWDEDNNR------------IYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp EEEEECTSSE------------EEEEESSGGTTSBEEEEEETT
T ss_pred cceEcCCCCE------------EEEEecCCCCCceEEEEEEeC
Confidence 667777653 45555543 34555655544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00028 Score=41.64 Aligned_cols=35 Identities=26% Similarity=0.598 Sum_probs=28.0
Q ss_pred cccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEe
Q 012007 155 SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd 189 (473)
..+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34456777888888888888888888888888885
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00097 Score=64.12 Aligned_cols=94 Identities=19% Similarity=0.249 Sum_probs=76.2
Q ss_pred cCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCcee-EEEEcCCC-EEEEEeCCCcEEEEeCcccCCCc
Q 012007 235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAIN-SVVAGFDS-LVFTGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 235 ~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~-~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~ 312 (473)
...|.-+.|+|.-.++|.+..+|.|.+..+. .+.+.++..|...++ +++|.|+| .++.|-.||+|++.|++.+..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~-- 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR-- 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc--
Confidence 4467889999999999999999999999997 888889987777777 99999999 889999999999999985432
Q ss_pred ceeeeeeeccCCccEEEEEEcc
Q 012007 313 KHCLAQVLLKHENAVTALAVNQ 334 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~ 334 (473)
+......-...|.++-|.+
T Consensus 97 ---l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 ---LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ---eeccccccccchheeeccc
Confidence 2232334456677777763
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00092 Score=64.26 Aligned_cols=94 Identities=17% Similarity=0.139 Sum_probs=71.2
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee-
Q 012007 161 SGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS- 239 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~- 239 (473)
.-.|.-+.|+|.-.++|++..+|.|.+..+.-.+ ...... +...++
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qR-lwtip~--------------------------------p~~~v~~ 66 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNWQR-LWTIPI--------------------------------PGENVTA 66 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEeccce-eEeccC--------------------------------CCCccce
Confidence 4568889999999999999999998887776222 111110 445555
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee-cCCCceeEEEEcC
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN-AHDDAINSVVAGF 287 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~~~ 287 (473)
+++|.|||+.|++|-.||+|++.|++++..+.... .-...|.++.|.+
T Consensus 67 sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 67 SLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 99999999999999999999999999988776632 2455677777753
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.12 Score=47.27 Aligned_cols=254 Identities=12% Similarity=0.113 Sum_probs=132.7
Q ss_pred ceeeeeeecccEEEEEecCCEEEEee----------CCCcEEEeeCCcc--ccc--cc-cCc----ccEEEEEEeCCCCE
Q 012007 115 LIGSIVRKEGHIYSLAASGDLLYTGS----------DSKNIRVWKNLKE--FSG--FK-SNS----GLVKAIIISGDSNK 175 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~~g~~l~tg~----------~dg~i~vwd~~~~--~~~--~~-~h~----~~V~~l~~s~~~~~ 175 (473)
+.+.+..--..-..++++++.++++. ..-.|.+||.... ... +. .|. .....++++.|+++
T Consensus 29 ~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~ 108 (342)
T PF06433_consen 29 LLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKF 108 (342)
T ss_dssp EEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSE
T ss_pred EEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcE
Confidence 34444333222345788899888753 2347999996532 111 11 111 12345678888888
Q ss_pred EEEEeC--CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE
Q 012007 176 IFTGHQ--DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG 253 (473)
Q Consensus 176 l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~ 253 (473)
++.... -..|.|-|+..++........ .+..+--. ...-|.+-
T Consensus 109 ~~V~N~TPa~SVtVVDl~~~kvv~ei~~P----------------------------------GC~~iyP~-~~~~F~~l 153 (342)
T PF06433_consen 109 LYVQNFTPATSVTVVDLAAKKVVGEIDTP----------------------------------GCWLIYPS-GNRGFSML 153 (342)
T ss_dssp EEEEEESSSEEEEEEETTTTEEEEEEEGT----------------------------------SEEEEEEE-ETTEEEEE
T ss_pred EEEEccCCCCeEEEEECCCCceeeeecCC----------------------------------CEEEEEec-CCCceEEE
Confidence 877543 457888898887765433321 11112111 22457778
Q ss_pred eCCCCEEEEEcC-CCeeeEEe----ecCCCce-eEEEEc-CCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeec---c-
Q 012007 254 SWDKTLKVWRIS-DCKCLESI----NAHDDAI-NSVVAG-FDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLL---K- 322 (473)
Q Consensus 254 s~dg~v~vwd~~-~~~~~~~~----~~~~~~v-~~l~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~---~- 322 (473)
+.||.+.-..+. .|+..... ....+++ ..-.+. .++.++-.+.+|.|+-.|+...... ......... .
T Consensus 154 C~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~-~~~~~~~~t~~e~~ 232 (342)
T PF06433_consen 154 CGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAK-FGKPWSLLTDAEKA 232 (342)
T ss_dssp ETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEE-EEEEEESS-HHHHH
T ss_pred ecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccc-ccCcccccCccccc
Confidence 889999888886 45544222 1112222 122222 3345666788898888887633210 000000000 0
Q ss_pred ---CCccEEEEEEccCCCEEEEeC--------CCC--cEEEEecCCcccccceeecCcceEEEEEecCC-EEEEE-eCCC
Q 012007 323 ---HENAVTALAVNQESAVVYCGS--------SDG--LVNFWECEKHLSHGGVLRGHKMAVLCLAAAGN-LVFSG-SADR 387 (473)
Q Consensus 323 ---~~~~v~~l~~~~~~~~l~~~~--------~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~-~~dg 387 (473)
..+.-.-+++++..+.|++.. .|+ .|-++|+.+++........+......++-+.+ +|++. ..++
T Consensus 233 ~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~ 312 (342)
T PF06433_consen 233 DGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDG 312 (342)
T ss_dssp TTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTT
T ss_pred cCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCC
Confidence 012233477777665555532 122 36677888877666555555554556666543 66554 4689
Q ss_pred cEEEEecCCCCceeEEEEec
Q 012007 388 NICLWRREESGAHSCLAVLT 407 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~~~ 407 (473)
.+.+||..++ +.+..+.
T Consensus 313 ~l~v~D~~tG---k~~~~~~ 329 (342)
T PF06433_consen 313 TLDVYDAATG---KLVRSIE 329 (342)
T ss_dssp EEEEEETTT-----EEEEE-
T ss_pred eEEEEeCcCC---cEEeehh
Confidence 9999999994 5555544
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0079 Score=61.47 Aligned_cols=99 Identities=12% Similarity=0.161 Sum_probs=72.3
Q ss_pred CEEEEEeCCCCEEEEEcCCC--eeeEE-e--ecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeecc
Q 012007 248 GLLYSGSWDKTLKVWRISDC--KCLES-I--NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLK 322 (473)
Q Consensus 248 ~~l~s~s~dg~v~vwd~~~~--~~~~~-~--~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 322 (473)
..-+.|-.+..+..||.+-. +++.. . -.......|++-..+|+|++|+.+|.||+||.. + ......+.+
T Consensus 543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g-----~~AKT~lp~ 616 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-G-----KRAKTALPG 616 (794)
T ss_pred CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeeccc-c-----hhhhhcCCC
Confidence 34566777889999999853 22211 1 124456889999999999999999999999942 1 223344556
Q ss_pred CCccEEEEEEccCCCEEEEeCCCCcEEEEec
Q 012007 323 HENAVTALAVNQESAVVYCGSSDGLVNFWEC 353 (473)
Q Consensus 323 ~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~ 353 (473)
-..+|..|..+.||++|++.+ +..|.+++.
T Consensus 617 lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 617 LGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 689999999999999987665 456777764
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.049 Score=54.92 Aligned_cols=188 Identities=7% Similarity=0.063 Sum_probs=96.7
Q ss_pred CCCEEEEEeCC------CCEEEEEcCCCeee--EEeecCCCceeEEEEcCCCEEEEEeCCC-----cEEEEeCcccCCCc
Q 012007 246 EQGLLYSGSWD------KTLKVWRISDCKCL--ESINAHDDAINSVVAGFDSLVFTGSADG-----TVKVWRRELQGKGT 312 (473)
Q Consensus 246 ~~~~l~s~s~d------g~v~vwd~~~~~~~--~~~~~~~~~v~~l~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~ 312 (473)
++.+.+.|+.+ ..+..||..+..-. ..+...... .+++...+...+.|+.++ .+..||....
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~-~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~---- 377 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCR-FSLAVIDDTIYAIGGQNGTNVERTIECYTMGDD---- 377 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhc-eeEEEECCEEEEECCcCCCCCCceEEEEECCCC----
Confidence 55666777753 34778888765432 112111111 123333344566676654 3778887632
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC-----------------------cEEEEecCCccc-ccceeecCcc
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG-----------------------LVNFWECEKHLS-HGGVLRGHKM 368 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-----------------------~i~iwd~~~~~~-~~~~~~~~~~ 368 (473)
.+.....+.........+++ ++.+.+.|+.++ .+..||.++..- ....+.....
T Consensus 378 ~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~ 455 (557)
T PHA02713 378 KWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI 455 (557)
T ss_pred eEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc
Confidence 22222222221222222222 577777777553 477788765321 1111111111
Q ss_pred eEEEEEecCCEEEEEeCC------CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEee
Q 012007 369 AVLCLAAAGNLVFSGSAD------RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS 442 (473)
Q Consensus 369 ~v~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s 442 (473)
.......++++.+.|+.+ ..+..||..+.+.+..+..+.........+++ ++. +.+.||
T Consensus 456 ~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~-------------iyv~Gg 520 (557)
T PHA02713 456 RPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNT-------------IMMLHC 520 (557)
T ss_pred cCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCE-------------EEEEee
Confidence 222345667777777754 24678888762246666655544333333333 333 888999
Q ss_pred CCC--cEEEEEcCCC
Q 012007 443 LDK--SVKVWRVSEH 455 (473)
Q Consensus 443 ~Dg--~v~iW~i~~~ 455 (473)
.|| .+..||+.+.
T Consensus 521 ~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 521 YESYMLQDTFNVYTY 535 (557)
T ss_pred ecceeehhhcCcccc
Confidence 888 6777776654
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0029 Score=64.76 Aligned_cols=79 Identities=14% Similarity=0.213 Sum_probs=62.2
Q ss_pred ecccEEEEEecCCEEEEeeCCCcEEEeeCCcccc---ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeE
Q 012007 122 KEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFS---GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVH 198 (473)
Q Consensus 122 h~~~V~~~~~~g~~l~tg~~dg~i~vwd~~~~~~---~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 198 (473)
-.+.+.+.+.-+.+++.|+..|.|-..|....+. .-..-.++|++++|+.+|..++.|-.+|.|.+||+..++....
T Consensus 88 ~~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~ 167 (1206)
T KOG2079|consen 88 IAAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKV 167 (1206)
T ss_pred CCcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceee
Confidence 3455667777788999999999999988664433 2223358999999999999999999999999999998776554
Q ss_pred Ee
Q 012007 199 KR 200 (473)
Q Consensus 199 ~~ 200 (473)
..
T Consensus 168 i~ 169 (1206)
T KOG2079|consen 168 IT 169 (1206)
T ss_pred ee
Confidence 44
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.039 Score=55.53 Aligned_cols=192 Identities=15% Similarity=0.128 Sum_probs=104.9
Q ss_pred EEEecCCEEEEee------CCCcEEEe--eCCccccccccCcccEEEEEEeCCCCEEEEEeCC-CeEEEEeCCCCCeeeE
Q 012007 128 SLAASGDLLYTGS------DSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQD-GKIRIWKVSRKNASVH 198 (473)
Q Consensus 128 ~~~~~g~~l~tg~------~dg~i~vw--d~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d-g~i~vwd~~~~~~~~~ 198 (473)
+++++|+.+|.-- .|+.-.|| +.......+.. ....+.-.|+|||+.|++.... ..+++.+-........
T Consensus 356 aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~ 434 (591)
T PRK13616 356 ALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLAR 434 (591)
T ss_pred eECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCCCceECCCCCceEEEecCcceEEEeccCCCceEEE
Confidence 4677888766554 24444455 54332222221 2237888999999888887543 2233333222111111
Q ss_pred EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEE---EEcCCCee-e---E
Q 012007 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKV---WRISDCKC-L---E 271 (473)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~v---wd~~~~~~-~---~ 271 (473)
..+.. .. ... .....|..+.|+|||..++... ++.|++ -....|.. + .
T Consensus 435 ~~vd~----------------------ge-~~~-~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~ 489 (591)
T PRK13616 435 TPVDA----------------------SA-VAS-RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPR 489 (591)
T ss_pred EeccC----------------------ch-hhh-ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccE
Confidence 11100 00 000 1356799999999999888876 577777 44344531 1 1
Q ss_pred Eeec-CCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEE
Q 012007 272 SINA-HDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350 (473)
Q Consensus 272 ~~~~-~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~i 350 (473)
.+.. -...+..+.|..++.|+++..++.-.+|.+...+..... .........+.+|+-+++ .++....+|.+.+
T Consensus 490 ~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~---~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 490 EVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDA---LPSRNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred EeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccc---cCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 1222 233468889999997777777776777776654432111 011112456777777763 4666666775444
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.022 Score=54.85 Aligned_cols=158 Identities=13% Similarity=0.098 Sum_probs=91.9
Q ss_pred CcccEEEEEEeCCCCEEEEEeC---C-CeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeecc
Q 012007 160 NSGLVKAIIISGDSNKIFTGHQ---D-GKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY 235 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~~---d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (473)
-...+..-+|++++..++-... . ..+.++++.++....... ..
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~---------------------------------~~ 237 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN---------------------------------FN 237 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec---------------------------------cC
Confidence 3455666788888876654422 2 358888888776443332 22
Q ss_pred CCeeEEEEcCCCCEEEEE-eCCCC--EEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCC
Q 012007 236 DAVSCLSLNAEQGLLYSG-SWDKT--LKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGK 310 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~-s~dg~--v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~ 310 (473)
..-..-+|+|||++|+.. ..||. |.+.|+..... ..+....+.-..=.|+|+| .+++.+..|.-.||-....+.
T Consensus 238 g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 238 GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC
Confidence 233346799999877655 45555 66677766663 3344333333345688998 566777778766665543332
Q ss_pred CcceeeeeeeccCCccEEEEEEccCCCEEEEeCC-CCc--EEEEecCCc
Q 012007 311 GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-DGL--VNFWECEKH 356 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~--i~iwd~~~~ 356 (473)
.. ..+......-..-.|+|+|++|+..+. +|. |.+.|+.+.
T Consensus 317 ~~-----~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 317 QV-----TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred ce-----eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCC
Confidence 11 111112222226789999998887664 344 555665543
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.056 Score=54.48 Aligned_cols=190 Identities=13% Similarity=0.084 Sum_probs=99.2
Q ss_pred cCcccEEEEEEeCCCCEEEEEe------CCC--eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceee
Q 012007 159 SNSGLVKAIIISGDSNKIFTGH------QDG--KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVL 230 (473)
Q Consensus 159 ~h~~~V~~l~~s~~~~~l~s~~------~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (473)
+....+...+++|+|+.++..- .|. .|.+++..... ....
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--~~lt------------------------------ 394 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA--VQVL------------------------------ 394 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc--eeee------------------------------
Confidence 3345688999999999887655 243 34444442211 1110
Q ss_pred EeeccCCeeEEEEcCCCCEEEEEeCC------------CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCC
Q 012007 231 KIRHYDAVSCLSLNAEQGLLYSGSWD------------KTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSAD 297 (473)
Q Consensus 231 ~~~~~~~v~~l~~~~~~~~l~s~s~d------------g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~d 297 (473)
.....+.-.|+|+|..|++.... +.+.+.++..+.... .....|..+.|++|| .++... +
T Consensus 395 ---~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~ 467 (591)
T PRK13616 395 ---EGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-G 467 (591)
T ss_pred ---cCCCCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-C
Confidence 11236677899998877777532 223333443332222 234579999999999 444333 5
Q ss_pred CcEEEEeCcccCCCc-ceeeeeee-ccCCccEEEEEEccCCCEEEEeCCCCcEEEEec--CCcccccceeec--CcceEE
Q 012007 298 GTVKVWRRELQGKGT-KHCLAQVL-LKHENAVTALAVNQESAVVYCGSSDGLVNFWEC--EKHLSHGGVLRG--HKMAVL 371 (473)
Q Consensus 298 g~i~vwd~~~~~~~~-~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~--~~~~v~ 371 (473)
|.|.+=-+.....+. .......+ ..-...+..+.|..++.++ ++..++...+|.+ ...... .+.. ....+.
T Consensus 468 g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~--~~~~~n~~~~v~ 544 (591)
T PRK13616 468 GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSD--ALPSRNLSAPVV 544 (591)
T ss_pred CEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCcccc--ccCCCCccCceE
Confidence 777763222111111 11111112 2233346889999998855 5555554455544 322111 1122 244556
Q ss_pred EEEecCCEEEEEeCCCcEE
Q 012007 372 CLAAAGNLVFSGSADRNIC 390 (473)
Q Consensus 372 ~~~~~~~~l~s~~~dg~i~ 390 (473)
.++-...-++....++.+.
T Consensus 545 ~vaa~~~~iyv~~~~g~~~ 563 (591)
T PRK13616 545 AVAASPSTVYVTDARAVLQ 563 (591)
T ss_pred EEecCCceEEEEcCCceEE
Confidence 6665555566666666443
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.21 Score=47.06 Aligned_cols=197 Identities=12% Similarity=0.120 Sum_probs=87.9
Q ss_pred CCEEEEee-CCCcEEEeeCCcc------cccccc---Cc----ccEEEEEEeCCCCEEEEEeCC------CeEEEEeCCC
Q 012007 133 GDLLYTGS-DSKNIRVWKNLKE------FSGFKS---NS----GLVKAIIISGDSNKIFTGHQD------GKIRIWKVSR 192 (473)
Q Consensus 133 g~~l~tg~-~dg~i~vwd~~~~------~~~~~~---h~----~~V~~l~~s~~~~~l~s~~~d------g~i~vwd~~~ 192 (473)
.++|+..+ ..+.|.|.|+... .+.+.. +. ..-..+..-|+|+.++++-.| |-+.+.|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 45666665 6789999997521 122211 11 122333345688888875332 4577777776
Q ss_pred CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC-----------------
Q 012007 193 KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW----------------- 255 (473)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~----------------- 255 (473)
.+..-....... ....-..+-|.|..+.++|..+
T Consensus 167 f~v~g~We~~~~-----------------------------~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~ 217 (461)
T PF05694_consen 167 FEVKGRWEKDRG-----------------------------PQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA 217 (461)
T ss_dssp --EEEE--SB-T-----------------------------T------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred ccccceeccCCC-----------------------------CCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence 554433322110 1122345556666666666542
Q ss_pred ---CCCEEEEEcCCCeeeEEeecCCC--ceeEEEEcCC--C--EEEEEeCCCcEEEEeCcccCCCcceeeeee-------
Q 012007 256 ---DKTLKVWRISDCKCLESINAHDD--AINSVVAGFD--S--LVFTGSADGTVKVWRRELQGKGTKHCLAQV------- 319 (473)
Q Consensus 256 ---dg~v~vwd~~~~~~~~~~~~~~~--~v~~l~~~~~--~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~------- 319 (473)
..++.+||+.+.+.++++..... ....|.|..+ . -++.+.-..+|..|-....+.=.....+..
T Consensus 218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 46799999999999999875432 3556666544 2 233333445555554321111000011110
Q ss_pred ---------eccCCccEEEEEEccCCCEEEEeC-CCCcEEEEecCCccc
Q 012007 320 ---------LLKHENAVTALAVNQESAVVYCGS-SDGLVNFWECEKHLS 358 (473)
Q Consensus 320 ---------~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~ 358 (473)
+..-..-|+.|.++.|.++|+.++ .+|.|+.||+.....
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 001134579999999999887654 589999999976443
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.25 Score=46.13 Aligned_cols=299 Identities=12% Similarity=0.108 Sum_probs=122.9
Q ss_pred EEEecCC-EEEEeeCCCcEEEe--eCC-ccccccccCc-ccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeec
Q 012007 128 SLAASGD-LLYTGSDSKNIRVW--KNL-KEFSGFKSNS-GLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 128 ~~~~~g~-~l~tg~~dg~i~vw--d~~-~~~~~~~~h~-~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 202 (473)
|+..+|+ +|+.+..||.-.+| |+. ..+..+.... .......++++++.|+-...+..|+.-|+.+.+......+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 4555675 55555557766666 554 3344444333 22334667788888876666678888999988765444432
Q ss_pred cccccceeEeecCC--CcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCce
Q 012007 203 SLPTFKDYVKSSVN--PKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAI 280 (473)
Q Consensus 203 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v 280 (473)
.. +..+.....+ ...++-+... .......-.|... ..++-+--...|.-.|+.+|+....+. ....+
T Consensus 122 ~~--~~g~gt~v~n~d~t~~~g~e~~-------~~d~~~l~~~~~f-~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wl 190 (386)
T PF14583_consen 122 DD--WKGYGTWVANSDCTKLVGIEIS-------REDWKPLTKWKGF-REFYEARPHCRIFTIDLKTGERKVVFE-DTDWL 190 (386)
T ss_dssp TT--EEEEEEEEE-TTSSEEEEEEEE-------GGG-----SHHHH-HHHHHC---EEEEEEETTT--EEEEEE-ESS-E
T ss_pred cc--cccccceeeCCCccEEEEEEEe-------ehhccCccccHHH-HHHHhhCCCceEEEEECCCCceeEEEe-cCccc
Confidence 11 1111111000 0011000000 0000000000000 000111112346667888877654444 45567
Q ss_pred eEEEEcCCC-EEEEEeCC----C-cEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEE-----eCCCCcEE
Q 012007 281 NSVVAGFDS-LVFTGSAD----G-TVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC-----GSSDGLVN 349 (473)
Q Consensus 281 ~~l~~~~~~-~l~s~~~d----g-~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-----~~~dg~i~ 349 (473)
.-+.++|.. .+++=+.. . .-+||-++..+... ..+... .....+..=-|.|||..|.- +..+..|.
T Consensus 191 gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~--~~v~~~-~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~ 267 (386)
T PF14583_consen 191 GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV--KKVHRR-MEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIA 267 (386)
T ss_dssp EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEE
T ss_pred cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc--eeeecC-CCCcccccccccCCCCEEEEEeecCCCCceEEE
Confidence 788888875 33333332 2 23778776544321 111111 12334455568888876543 22344577
Q ss_pred EEecCCcccccceeecCcceEEEEEecCCEEEEEeCCC----------------cEEEEecCCCCceeEEEE-------e
Q 012007 350 FWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADR----------------NICLWRREESGAHSCLAV-------L 406 (473)
Q Consensus 350 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg----------------~i~iwd~~~~~~~~~~~~-------~ 406 (473)
-+|+.+..... ........-.-.+++|++++-=+.|. -|+++++..+.. ..+.. +
T Consensus 268 ~~d~~t~~~~~-~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~-~~l~~h~~sw~v~ 345 (386)
T PF14583_consen 268 GYDPDTGERRR-LMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF-RKLARHDTSWKVL 345 (386)
T ss_dssp EE-TTT--EEE-EEEE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEE-EEEEE-------B
T ss_pred eeCCCCCCceE-EEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCce-eeeeeccCcceee
Confidence 77777653321 11111122233346788776544442 456677765322 22222 1
Q ss_pred cCCCC-ceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 407 TGHTG-PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 407 ~~h~~-~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
.++.. .=-...|+||++. +|+++...|...||-+.-
T Consensus 346 ~~~~q~~hPhp~FSPDgk~------------VlF~Sd~~G~~~vY~v~i 382 (386)
T PF14583_consen 346 DGDRQVTHPHPSFSPDGKW------------VLFRSDMEGPPAVYLVEI 382 (386)
T ss_dssp TTBSSTT----EE-TTSSE------------EEEEE-TTSS-EEEEEE-
T ss_pred cCCCccCCCCCccCCCCCE------------EEEECCCCCCccEEEEeC
Confidence 22111 1145788888874 889999999988886643
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.32 Score=47.31 Aligned_cols=199 Identities=13% Similarity=0.093 Sum_probs=105.0
Q ss_pred eeEEEEcCCCCEEEEE-eCCC----CEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCC----------cE
Q 012007 238 VSCLSLNAEQGLLYSG-SWDK----TLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADG----------TV 300 (473)
Q Consensus 238 v~~l~~~~~~~~l~s~-s~dg----~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg----------~i 300 (473)
+..+.++|++++++.+ +..| .|+++|+++++.+...-.. .....+.|.+++ ++++...+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3467899999988865 4444 4999999999876543111 112238999986 444443332 25
Q ss_pred EEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC---C-CcEEEEecCCc----ccccceeecCcceEEE
Q 012007 301 KVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS---D-GLVNFWECEKH----LSHGGVLRGHKMAVLC 372 (473)
Q Consensus 301 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---d-g~i~iwd~~~~----~~~~~~~~~~~~~v~~ 372 (473)
..|++.+.. ..-.++............+..++++++|+.... + ..+.+.|+... ................
T Consensus 205 ~~~~~gt~~--~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 205 YRHKLGTPQ--SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEETTS-G--GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEECCCCh--HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 666664321 111122222222223678889999998775432 2 45777788763 2222233333333334
Q ss_pred EEecCCEEEEEe----CCCcEEEEecCCCCceeEEEEecCCCC--ceeEEEEecCCCCCcccccCCCccEEEEEeeCCCc
Q 012007 373 LAAAGNLVFSGS----ADRNICLWRREESGAHSCLAVLTGHTG--PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKS 446 (473)
Q Consensus 373 ~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~h~~--~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~ 446 (473)
+...+..|+.-+ .++.|.-.++.......-...+..|.. .+..+....+. +++..-.++.
T Consensus 283 v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~--------------Lvl~~~~~~~ 348 (414)
T PF02897_consen 283 VDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDY--------------LVLSYRENGS 348 (414)
T ss_dssp EEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTE--------------EEEEEEETTE
T ss_pred EEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCE--------------EEEEEEECCc
Confidence 444455444333 235677777776443222224445554 45555544332 5666666654
Q ss_pred --EEEEEcC
Q 012007 447 --VKVWRVS 453 (473)
Q Consensus 447 --v~iW~i~ 453 (473)
|+++++.
T Consensus 349 ~~l~v~~~~ 357 (414)
T PF02897_consen 349 SRLRVYDLD 357 (414)
T ss_dssp EEEEEEETT
T ss_pred cEEEEEECC
Confidence 7788887
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.14 Score=51.52 Aligned_cols=186 Identities=15% Similarity=0.187 Sum_probs=97.1
Q ss_pred CCCEEEEEeCC------CCEEEEEcCCCeeeE--EeecCCCceeEEEEcCCCEEEEEeCCCc-----EEEEeCcccCCCc
Q 012007 246 EQGLLYSGSWD------KTLKVWRISDCKCLE--SINAHDDAINSVVAGFDSLVFTGSADGT-----VKVWRRELQGKGT 312 (473)
Q Consensus 246 ~~~~l~s~s~d------g~v~vwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~l~s~~~dg~-----i~vwd~~~~~~~~ 312 (473)
++.+.++|+.| .++..||..+.+-.. .+...... ..++...+.+.++|+.||. +-.||.+..
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~-~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~---- 406 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSD-FGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTN---- 406 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcccc-ceeEEECCEEEEEeccccccccccEEEecCCCC----
Confidence 45778888888 347778877655222 22211111 1223333347778888864 667776532
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC------cEEEEecCCccc-ccceeecCcceEEEEEecCCEEEEEeC
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG------LVNFWECEKHLS-HGGVLRGHKMAVLCLAAAGNLVFSGSA 385 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg------~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~l~s~~~ 385 (473)
.+.....+.......-...+ +|.+.++|+.++ .+..||..+..- ....+..-.........++.+.+.||.
T Consensus 407 ~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~ 484 (571)
T KOG4441|consen 407 KWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGF 484 (571)
T ss_pred cccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCc
Confidence 23332222222222222222 577788887654 467788765321 111111112222344567888888888
Q ss_pred CCc-----EEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCc-----EEEEEcCC
Q 012007 386 DRN-----ICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKS-----VKVWRVSE 454 (473)
Q Consensus 386 dg~-----i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~-----v~iW~i~~ 454 (473)
|+. |..||..+ ..+..+.........+....+. +. +.+.|+.||. |..||...
T Consensus 485 ~~~~~~~~VE~ydp~~-~~W~~v~~m~~~rs~~g~~~~~--~~-------------ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 485 DGTSALSSVERYDPET-NQWTMVAPMTSPRSAVGVVVLG--GK-------------LYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred cCCCccceEEEEcCCC-CceeEcccCccccccccEEEEC--CE-------------EEEEecccCccccceeEEcCCCC
Confidence 763 77788877 3344444333333332222222 22 7888888875 55565443
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.073 Score=51.31 Aligned_cols=156 Identities=14% Similarity=0.104 Sum_probs=92.3
Q ss_pred CCeeEEEEcCCCCEEEEEe---CC-CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccC
Q 012007 236 DAVSCLSLNAEQGLLYSGS---WD-KTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s---~d-g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~ 309 (473)
..+..-+|++++..++-.. .. ..+.++|+.+++....+. ..+.-..-.|+|++ ++++...||...||-.....
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~ 271 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG 271 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence 3445556888777654432 22 359999999887655554 22333455789998 67777888876666444322
Q ss_pred CCcceeeeeeeccCCccEEEEEEccCCCEEEEeC-CCCc--EEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCC
Q 012007 310 KGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS-SDGL--VNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSAD 386 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d 386 (473)
+. ...+....+.-+.=.|+|||+.++-.+ ..|. |.++|.+..........+.......++++|++|+..+..
T Consensus 272 ~~-----~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 272 KN-----LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSS 346 (425)
T ss_pred Cc-----ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEecc
Confidence 21 111222222233567999998876654 4454 566666654433333333333466788999988877743
Q ss_pred -Cc--EEEEecCCC
Q 012007 387 -RN--ICLWRREES 397 (473)
Q Consensus 387 -g~--i~iwd~~~~ 397 (473)
|. |.+.|+.++
T Consensus 347 ~g~~~i~~~~~~~~ 360 (425)
T COG0823 347 GGQWDIDKNDLASG 360 (425)
T ss_pred CCceeeEEeccCCC
Confidence 44 666666664
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.61 Score=46.71 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=21.3
Q ss_pred EEEEeeCCCcEEEEEcCCCCCCccC
Q 012007 437 TVYSGSLDKSVKVWRVSEHAPDLKG 461 (473)
Q Consensus 437 ~l~s~s~Dg~v~iW~i~~~~~~~~~ 461 (473)
+++.++.||.++.+|..+++..++.
T Consensus 474 lvf~g~~~G~l~a~D~~TGe~lw~~ 498 (527)
T TIGR03075 474 LVFYGTLEGYFKAFDAKTGEELWKF 498 (527)
T ss_pred EEEEECCCCeEEEEECCCCCEeEEE
Confidence 5677888999999999999887764
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.026 Score=53.66 Aligned_cols=143 Identities=13% Similarity=0.187 Sum_probs=94.4
Q ss_pred CCCCEEE-EEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCC-
Q 012007 171 GDSNKIF-TGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQG- 248 (473)
Q Consensus 171 ~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~- 248 (473)
.+.++|+ ++.....++-.|++.++.+..... ...|.-+.+.|+.+
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~---------------------------------~~di~mv~~t~d~K~ 389 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKF---------------------------------EDDINMVDITPDFKF 389 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeec---------------------------------cCCcceeeccCCcch
Confidence 3444444 344455677778888876655543 22255666666432
Q ss_pred ------EEEEEeCCCCEEEEEcCCC-e-eeEEeecC----CCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceee
Q 012007 249 ------LLYSGSWDKTLKVWRISDC-K-CLESINAH----DDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCL 316 (473)
Q Consensus 249 ------~l~s~s~dg~v~vwd~~~~-~-~~~~~~~~----~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 316 (473)
.-+.|-.|..|.-||.+-. + .+...+.| .....|.+-..+|++++|+.+|.|++||.- ....
T Consensus 390 ~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri------~~~A 463 (644)
T KOG2395|consen 390 AQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRI------GRRA 463 (644)
T ss_pred hcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhh------hhhh
Confidence 2345667889999998732 2 22222222 345677888888999999999999999973 2223
Q ss_pred eeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEec
Q 012007 317 AQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWEC 353 (473)
Q Consensus 317 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~ 353 (473)
...+.+-..+|..+..+.+|++|++.+ +.++.+.++
T Consensus 464 KTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 464 KTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred hhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 345667788999999999999987665 456666664
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0048 Score=52.12 Aligned_cols=137 Identities=18% Similarity=0.247 Sum_probs=80.2
Q ss_pred EEEeeCCCcEEEeeCCcccccc---ccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEe
Q 012007 136 LYTGSDSKNIRVWKNLKEFSGF---KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVK 212 (473)
Q Consensus 136 l~tg~~dg~i~vwd~~~~~~~~---~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 212 (473)
|..-+.||.|+-+++.+..... ..|... .....-+..|+.|+.+|.|.+|+............
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~----------- 98 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVC----------- 98 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhh-----------
Confidence 3444567888888765322211 112222 11122345799999999999998863221110000
Q ss_pred ecCCCcceEEEeecceeeEeeccCCeeE-EEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCC-CceeEEE-EcCCC
Q 012007 213 SSVNPKNYVEVRRNRSVLKIRHYDAVSC-LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHD-DAINSVV-AGFDS 289 (473)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~-~~v~~l~-~~~~~ 289 (473)
.-...|.+ +.-..++.+.++++.||.|+.|++.-.+.+.....|. ..+..+. ...+.
T Consensus 99 --------------------s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~ 158 (238)
T KOG2444|consen 99 --------------------SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDE 158 (238)
T ss_pred --------------------cccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCc
Confidence 01122222 2222356689999999999999999888887777776 3443333 33444
Q ss_pred EEEEE--eCCCcEEEEeCc
Q 012007 290 LVFTG--SADGTVKVWRRE 306 (473)
Q Consensus 290 ~l~s~--~~dg~i~vwd~~ 306 (473)
.+... +.|..++.|++.
T Consensus 159 ~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 159 FLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eEEeeccccchhhhhcchh
Confidence 55555 777777777765
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.44 Score=43.55 Aligned_cols=157 Identities=10% Similarity=0.051 Sum_probs=76.0
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTK 313 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 313 (473)
-...+..+.-+++|.+++++.....+.-||--...-...-......|..+.|.+++.|......|.|++=+..... ..
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~--~~ 220 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDG--ET 220 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEE--EE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCc--cc
Confidence 3466788888999999988876655667875432122222234578999999999977667789999887721110 11
Q ss_pred eee-eeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe-cCCEEEEEeCCCcEEE
Q 012007 314 HCL-AQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA-AGNLVFSGSADRNICL 391 (473)
Q Consensus 314 ~~~-~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~i 391 (473)
... ..........+..++|.+++...++|+....++--|--+..+.......-......+.+ +.+.-++-+.+|.|.-
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~ 300 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLR 300 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEE
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEE
Confidence 111 11111233458999999998888877765333333322211111111112223444443 3445555566887765
Q ss_pred E
Q 012007 392 W 392 (473)
Q Consensus 392 w 392 (473)
|
T Consensus 301 ~ 301 (302)
T PF14870_consen 301 Y 301 (302)
T ss_dssp E
T ss_pred e
Confidence 5
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.061 Score=54.24 Aligned_cols=144 Identities=5% Similarity=-0.030 Sum_probs=76.0
Q ss_pred CCCEEEEEeCCC-----CEEEEEcCCCeee--EEeecCCCceeEEEEcCCCEEEEEeCCC--------------------
Q 012007 246 EQGLLYSGSWDK-----TLKVWRISDCKCL--ESINAHDDAINSVVAGFDSLVFTGSADG-------------------- 298 (473)
Q Consensus 246 ~~~~l~s~s~dg-----~v~vwd~~~~~~~--~~~~~~~~~v~~l~~~~~~~l~s~~~dg-------------------- 298 (473)
++++.+.||.++ .+..||..+.+-. ..+....... +++...+...+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~-~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSY-GMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccc-cEEEECCEEEEEeCCCccccccccccccccccccccc
Confidence 567777777654 4788998765322 2222111111 22222233555566542
Q ss_pred ---cEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC------CcEEEEecCC--cccccceeecCc
Q 012007 299 ---TVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD------GLVNFWECEK--HLSHGGVLRGHK 367 (473)
Q Consensus 299 ---~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d------g~i~iwd~~~--~~~~~~~~~~~~ 367 (473)
.+..||.+.. .+.....+....... +++. -++++.+.|+.+ ..+..||.++ .......+....
T Consensus 430 ~~~~ve~YDP~td----~W~~v~~m~~~r~~~-~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r 503 (557)
T PHA02713 430 SSNKVIRYDTVNN----IWETLPNFWTGTIRP-GVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL 503 (557)
T ss_pred ccceEEEECCCCC----eEeecCCCCcccccC-cEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence 4667776532 222222221111111 1222 245666667654 2467899876 233333343344
Q ss_pred ceEEEEEecCCEEEEEeCCC--cEEEEecCC
Q 012007 368 MAVLCLAAAGNLVFSGSADR--NICLWRREE 396 (473)
Q Consensus 368 ~~v~~~~~~~~~l~s~~~dg--~i~iwd~~~ 396 (473)
........++.+.++|+.|+ .+..||..+
T Consensus 504 ~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 504 SALHTILHDNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred ccceeEEECCEEEEEeeecceeehhhcCccc
Confidence 44455566899999999888 677888876
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.44 Score=48.10 Aligned_cols=144 Identities=18% Similarity=0.229 Sum_probs=77.3
Q ss_pred CCCEEEEEeCCCC-----EEEEEcCCCee--eEEeecCCCceeEEEEcCCCEEEEEeCCC------cEEEEeCcccCCCc
Q 012007 246 EQGLLYSGSWDKT-----LKVWRISDCKC--LESINAHDDAINSVVAGFDSLVFTGSADG------TVKVWRRELQGKGT 312 (473)
Q Consensus 246 ~~~~l~s~s~dg~-----v~vwd~~~~~~--~~~~~~~~~~v~~l~~~~~~~l~s~~~dg------~i~vwd~~~~~~~~ 312 (473)
+|.+.++|+.||. |..||..+.+- +..+.... .-.+++.......++|+.++ .+..||..+.
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r-~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~---- 454 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRR-SGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN---- 454 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCCcce-eeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC----
Confidence 6778888888865 67777765432 22121111 11122222233566666554 4677777642
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCc-----EEEEecCCcccc-cceeecCcceEEEEEecCCEEEEEeCC
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGL-----VNFWECEKHLSH-GGVLRGHKMAVLCLAAAGNLVFSGSAD 386 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~~~d 386 (473)
.+.....+..-..... ++. -++.+.+.|+.|+. |..||..+..-. ..........+-+...++...++|+.|
T Consensus 455 ~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~ 532 (571)
T KOG4441|consen 455 TWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFD 532 (571)
T ss_pred ceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEeccc
Confidence 2322222222222222 222 25677888887763 777887753222 222333344445556678888888877
Q ss_pred C-----cEEEEecCC
Q 012007 387 R-----NICLWRREE 396 (473)
Q Consensus 387 g-----~i~iwd~~~ 396 (473)
| +|..||..+
T Consensus 533 ~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 533 GNNNLNTVECYDPET 547 (571)
T ss_pred CccccceeEEcCCCC
Confidence 6 366676665
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.27 Score=46.88 Aligned_cols=87 Identities=14% Similarity=0.189 Sum_probs=51.8
Q ss_pred EEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCc-eeEEEEecCCCC--C---cccccCCCccEEEEEeeC
Q 012007 370 VLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGP-VKCLAVEEDRDH--D---HEYHQKGDQRWTVYSGSL 443 (473)
Q Consensus 370 v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~-V~~l~~~~~~~~--~---~~~~~~~~~~~~l~s~s~ 443 (473)
..+++|++++.++...=|.|.++|+.. ...++.++|..+. +.-+........ . ..........++++-+-.
T Consensus 312 ~i~~sP~~~laA~tDslGRV~LiD~~~---~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 312 SICLSPSGRLAAVTDSLGRVLLIDVAR---GIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCC---ChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 356678888888887779999999998 4666666665442 111111111110 0 000001112345666777
Q ss_pred CCcEEEEEcCCCCCCc
Q 012007 444 DKSVKVWRVSEHAPDL 459 (473)
Q Consensus 444 Dg~v~iW~i~~~~~~~ 459 (473)
-|.|.||.+..+.+..
T Consensus 389 Rg~lEvW~~~~g~Rv~ 404 (415)
T PF14655_consen 389 RGILEVWSMRQGPRVA 404 (415)
T ss_pred CCeEEEEecCCCCEEE
Confidence 8999999999886543
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.69 Score=44.33 Aligned_cols=194 Identities=19% Similarity=0.189 Sum_probs=120.0
Q ss_pred eeEEEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeC---CCcEEEEeCcccCCCc
Q 012007 238 VSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSA---DGTVKVWRRELQGKGT 312 (473)
Q Consensus 238 v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~---dg~i~vwd~~~~~~~~ 312 (473)
-..+++++.++.++... .++.|.+.|..+.+.+....... ....+++.+++ .++.+.. ++.+.+.|.....
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~--- 151 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK--- 151 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe---
Confidence 34677888887555544 45899999988877777665433 56678888887 5544444 6778888765321
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeC-CCCcEEEEecCCccccc-----ceeecCcceEEEEEecCCEEEEEeCC
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGS-SDGLVNFWECEKHLSHG-----GVLRGHKMAVLCLAAAGNLVFSGSAD 386 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~-----~~~~~~~~~v~~~~~~~~~l~s~~~d 386 (473)
.. ........+ ..+++.|+|..++... .++.|.+.|........ ....+.......+.++|.++.+....
T Consensus 152 --~~-~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 152 --VT-ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred --EE-EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc
Confidence 12 222222233 8899999999666655 78899999976543221 11222233456778888866665544
Q ss_pred ---CcEEEEecCCCCceeEEEE-ecCCCCceeEEEEecCCCCCcccccCCCccEEEEEe-eCCCcEEEEEcCCC
Q 012007 387 ---RNICLWRREESGAHSCLAV-LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG-SLDKSVKVWRVSEH 455 (473)
Q Consensus 387 ---g~i~iwd~~~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~-s~Dg~v~iW~i~~~ 455 (473)
+.+...|..+. ..... ...-......+.+.|++. .+... +..+.|.+-|....
T Consensus 228 ~~~~~v~~id~~~~---~v~~~~~~~~~~~~~~v~~~p~g~-------------~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 228 SGSNNVLKIDTATG---NVTATDLPVGSGAPRGVAVDPAGK-------------AAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred CCCceEEEEeCCCc---eEEEeccccccCCCCceeECCCCC-------------EEEEEecCCCeEEEEeCCCC
Confidence 58888888773 33332 111111456788999988 44444 33466777666553
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.45 Score=42.30 Aligned_cols=168 Identities=7% Similarity=0.047 Sum_probs=104.5
Q ss_pred ccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCC
Q 012007 158 KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA 237 (473)
Q Consensus 158 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (473)
.+-...|.++.|+|+.+.|++......-.||=...++.........+ ..
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-------------------------------~D 130 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-------------------------------SD 130 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-------------------------------CC
Confidence 44455599999999999999988877777776667776665554422 22
Q ss_pred eeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEE----------eecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCc
Q 012007 238 VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES----------INAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRE 306 (473)
Q Consensus 238 v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~----------~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~ 306 (473)
...|.+..++.+.++--.++.+.++.+.....+.. ..........++|.+.+ .|+.+-...-+.||.+.
T Consensus 131 pE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 131 PETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred hhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 23466666777777666777788777654422211 11124567789998876 77777777778888765
Q ss_pred ccCCCcceeeeeeecc----CCccEEEEEEcc-CCCEEEEeCCCCcEEEEecCCc
Q 012007 307 LQGKGTKHCLAQVLLK----HENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKH 356 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~----~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~ 356 (473)
................ .-..|.++.|++ .+.+|+-+.+++.+.-.|....
T Consensus 211 ~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 211 QSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 2221111100000000 123467788887 4566777777777777777643
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0077 Score=37.55 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=30.7
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
....|.+++|+|..++||.|+.||.|.++.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 4457999999999999999999999999998 5554
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.63 Score=42.52 Aligned_cols=155 Identities=12% Similarity=0.149 Sum_probs=80.8
Q ss_pred cCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCe
Q 012007 159 SNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAV 238 (473)
Q Consensus 159 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 238 (473)
.-.+.+..+.-++||++++++.......-||-....-..+.+ .....|
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r--------------------------------~~~~ri 189 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR--------------------------------NSSRRI 189 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----------------------------------SSS-E
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEcc--------------------------------Ccccee
Confidence 345778999999999999888766666778765433322222 145789
Q ss_pred eEEEEcCCCCEEEEEeCCCCEEEEEc-CCCeeeEE----eecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcc
Q 012007 239 SCLSLNAEQGLLYSGSWDKTLKVWRI-SDCKCLES----INAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTK 313 (473)
Q Consensus 239 ~~l~~~~~~~~l~s~s~dg~v~vwd~-~~~~~~~~----~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 313 (473)
..|.|.|++.+.+.+ ..|.|+.=+. ...+.... +....-.+..+++.+++.+.+++..|.+.+ ..+ ++ ..
T Consensus 190 q~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~-S~D-gG--kt 264 (302)
T PF14870_consen 190 QSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV-STD-GG--KT 264 (302)
T ss_dssp EEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE-ESS-TT--SS
T ss_pred hhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEE-eCC-CC--cc
Confidence 999999997766644 7888888772 22222211 112233478899998887777777775533 222 11 22
Q ss_pred eeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEE
Q 012007 314 HCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFW 351 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iw 351 (473)
.........-...+..|.|.+..+-++. +.+|.|.-|
T Consensus 265 W~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 265 WQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp -EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred ceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 3222333344566888888766555554 467776544
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.091 Score=44.76 Aligned_cols=124 Identities=13% Similarity=0.167 Sum_probs=77.9
Q ss_pred CcEEEeeCCccccccccCcccEEEEEEeCCCCEEE-EEeCCCeEEEEe--CCCCCeeeEEeeccccccceeEeecCCCcc
Q 012007 143 KNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIF-TGHQDGKIRIWK--VSRKNASVHKRVGSLPTFKDYVKSSVNPKN 219 (473)
Q Consensus 143 g~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~i~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (473)
|.++.|-....+..+...-+--+.++|+.+.+.+. +-+.+-.|.-|| ..++.......+
T Consensus 139 g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i------------------ 200 (310)
T KOG4499|consen 139 GELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVI------------------ 200 (310)
T ss_pred cEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCccee------------------
Confidence 45556655444444444444456788987776554 445567787788 455543222111
Q ss_pred eEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC
Q 012007 220 YVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS 289 (473)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~ 289 (473)
+.++..+.. ..-.--.++...+|++.++.-..++|...|..+|+.+.+++.....|++++|.-.+
T Consensus 201 -~dlrk~~~~----e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn 265 (310)
T KOG4499|consen 201 -FDLRKSQPF----ESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKN 265 (310)
T ss_pred -EEeccCCCc----CCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCC
Confidence 111111000 01111234456688888888888999999999999999999999999999997653
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.14 Score=45.12 Aligned_cols=194 Identities=17% Similarity=0.189 Sum_probs=103.6
Q ss_pred EEeCCCCEEEEEeCC-----CeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEE
Q 012007 168 IISGDSNKIFTGHQD-----GKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS 242 (473)
Q Consensus 168 ~~s~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 242 (473)
.|++||.+|+..-.| |.|-|||...+- .++.+.+ .|.-.-..+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~f----qrvgE~~---------------------------t~GiGpHev~ 168 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGF----QRVGEFS---------------------------THGIGPHEVT 168 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEeccccc----ceecccc---------------------------cCCcCcceeE
Confidence 589999999876544 789999987432 1122221 1444456788
Q ss_pred EcCCCCEEEEEeC------------------CCCEEEEEcCCCeeeEEe--e--cCCCceeEEEEcCCCEEEEEeC-CCc
Q 012007 243 LNAEQGLLYSGSW------------------DKTLKVWRISDCKCLESI--N--AHDDAINSVVAGFDSLVFTGSA-DGT 299 (473)
Q Consensus 243 ~~~~~~~l~s~s~------------------dg~v~vwd~~~~~~~~~~--~--~~~~~v~~l~~~~~~~l~s~~~-dg~ 299 (473)
|.+||+.++.+.. .-.+.+.|..+|+.+.+. . .+...|..++..+++.+..|+. .|.
T Consensus 169 lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~ 248 (366)
T COG3490 169 LMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGP 248 (366)
T ss_pred EecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCC
Confidence 8999998887752 112334444455544332 2 2344677777777775555543 111
Q ss_pred ----EEEEeCcccCCCc--ceeeeeeeccCCccEEEEEEccCCCEEEEeC-CCCcEEEEecCCcccccceeecCcceEEE
Q 012007 300 ----VKVWRRELQGKGT--KHCLAQVLLKHENAVTALAVNQESAVVYCGS-SDGLVNFWECEKHLSHGGVLRGHKMAVLC 372 (473)
Q Consensus 300 ----i~vwd~~~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 372 (473)
--+.-....++.. ..............|-+|+.+.+..+++..+ ..+...+||..++...... .-..+..
T Consensus 249 ~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a---~l~daaG 325 (366)
T COG3490 249 RNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEA---ALPDAAG 325 (366)
T ss_pred CccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecc---ccccccc
Confidence 0000000000000 0000111122334567788887555555444 4556789999887544211 1122344
Q ss_pred EEecCCEEEEEeCCCcEEEEecC
Q 012007 373 LAAAGNLVFSGSADRNICLWRRE 395 (473)
Q Consensus 373 ~~~~~~~l~s~~~dg~i~iwd~~ 395 (473)
+.....-+++.+.+|.+.++...
T Consensus 326 va~~~~gf~vssg~G~~~~~s~~ 348 (366)
T COG3490 326 VAAAKGGFAVSSGQGRIIFYSRA 348 (366)
T ss_pred ceeccCceEEecCCceEEecccc
Confidence 55565666666778888888543
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.013 Score=60.21 Aligned_cols=102 Identities=22% Similarity=0.403 Sum_probs=74.5
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEE
Q 012007 172 DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLY 251 (473)
Q Consensus 172 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 251 (473)
.+..++.|+..|.|-..|+...-....... .-..+|++++|+.+|..++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne-------------------------------~v~~~Vtsvafn~dg~~l~ 146 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNE-------------------------------RVQGPVTSVAFNQDGSLLL 146 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCC-------------------------------ccCCcceeeEecCCCceec
Confidence 445788888888888888765411000000 1567899999999999999
Q ss_pred EEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEE---cCC-CEEEEEeCCCcEEEEeCc
Q 012007 252 SGSWDKTLKVWRISDCKCLESINAHDDAINSVVA---GFD-SLVFTGSADGTVKVWRRE 306 (473)
Q Consensus 252 s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~---~~~-~~l~s~~~dg~i~vwd~~ 306 (473)
.|-.+|.|.+||+..++.++.+..|..+...+.+ ..+ ..++++...|. +|.+.
T Consensus 147 ~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 147 AGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred cccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 9999999999999999999988877766666543 233 36778777776 66543
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.19 E-value=1.9 Score=44.76 Aligned_cols=305 Identities=16% Similarity=0.156 Sum_probs=156.4
Q ss_pred cccEEEEEec--------CCEEEEeeCCCcEEEeeCC--ccc-----cccccCcccEEEEEEeCCCCEEEEEeCCCeEEE
Q 012007 123 EGHIYSLAAS--------GDLLYTGSDSKNIRVWKNL--KEF-----SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187 (473)
Q Consensus 123 ~~~V~~~~~~--------g~~l~tg~~dg~i~vwd~~--~~~-----~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~v 187 (473)
+..|.|+..+ .++++.|..+..+.+--.. ..+ .....-...|.-.++-.|..+|.++..||.+.-
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 3557777543 2289999887766654211 111 111222355667777777889999999999887
Q ss_pred EeCCCCC--eeeEE--eeccccccceeEeecCCCcceEEEeecceeeEeeccCC----------eeE-EEEcC--CCCEE
Q 012007 188 WKVSRKN--ASVHK--RVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA----------VSC-LSLNA--EQGLL 250 (473)
Q Consensus 188 wd~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------v~~-l~~~~--~~~~l 250 (473)
+.++... ..... .++..|.. +..........+.....++.....+.+. +.. +.|+. -...|
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~--Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l 687 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPIS--LRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSL 687 (1096)
T ss_pred EEEEcccceEccccccccCCCCcE--EEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceE
Confidence 6554433 22222 12222211 1111111122222222222222222221 111 11222 12345
Q ss_pred EEEeCCCCEEEEEcCCCee--eEEeecCCCceeEEEEcCCC-EEEEEeC-----------CC---cEEEEeCcccCCCcc
Q 012007 251 YSGSWDKTLKVWRISDCKC--LESINAHDDAINSVVAGFDS-LVFTGSA-----------DG---TVKVWRRELQGKGTK 313 (473)
Q Consensus 251 ~s~s~dg~v~vwd~~~~~~--~~~~~~~~~~v~~l~~~~~~-~l~s~~~-----------dg---~i~vwd~~~~~~~~~ 313 (473)
+++. .+.+++.-+..-+. ++++.. ......+++.+.. .+++.+. .. .++++|-.+ .
T Consensus 688 ~~~~-~~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nT-----f 760 (1096)
T KOG1897|consen 688 ASAN-GGALTIGTIDEIQKLHIRTVPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNT-----F 760 (1096)
T ss_pred EEec-CCceEEEEecchhhcceeeecC-CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCc-----e
Confidence 5554 45677776654332 233332 2344556665533 2222221 11 244555432 1
Q ss_pred eeeeeeeccCC---ccEEEEEEccC-CCEEEEeCC----------CCcEEEEecCCcccccceeec--CcceEEEEE-ec
Q 012007 314 HCLAQVLLKHE---NAVTALAVNQE-SAVVYCGSS----------DGLVNFWECEKHLSHGGVLRG--HKMAVLCLA-AA 376 (473)
Q Consensus 314 ~~~~~~~~~~~---~~v~~l~~~~~-~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~-~~ 376 (473)
..+........ ..|.++.|..| +.++++|+. .|.|.+|.......+ ..... -.+.+.++. ++
T Consensus 761 ~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L-~~v~e~~v~Gav~aL~~fn 839 (1096)
T KOG1897|consen 761 EVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL-ELVAETVVKGAVYALVEFN 839 (1096)
T ss_pred eEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce-eeeeeeeeccceeehhhhC
Confidence 11111111111 23445558777 677777753 477888877652222 12222 234445553 56
Q ss_pred CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 377 GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 377 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
|++||.- ...|++|+..+ .+.++.-..|..++..+...-.+. .++.|..-+++.+-.....
T Consensus 840 gkllA~I--n~~vrLye~t~---~~eLr~e~~~~~~~~aL~l~v~gd-------------eI~VgDlm~Sitll~y~~~ 900 (1096)
T KOG1897|consen 840 GKLLAGI--NQSVRLYEWTT---ERELRIECNISNPIIALDLQVKGD-------------EIAVGDLMRSITLLQYKGD 900 (1096)
T ss_pred CeEEEec--CcEEEEEEccc---cceehhhhcccCCeEEEEEEecCc-------------EEEEeeccceEEEEEEecc
Confidence 7777654 45799999988 456666677888899999888887 7888888888777655443
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.023 Score=35.41 Aligned_cols=31 Identities=16% Similarity=0.357 Sum_probs=28.5
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q 012007 161 SGLVKAIIISGDSNKIFTGHQDGKIRIWKVS 191 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~ 191 (473)
...|.+++|+|...+||.+..+|.|.++.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999984
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.71 Score=39.58 Aligned_cols=138 Identities=12% Similarity=0.103 Sum_probs=77.5
Q ss_pred CCeeEEEEcCCCCEEEEEeC-C---------CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEE
Q 012007 236 DAVSCLSLNAEQGLLYSGSW-D---------KTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVW 303 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~-d---------g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vw 303 (473)
...+.-..+|+|++ +.|.. | |.++.|-. +..+..+...-..-+.++|..+. +.++-+.+-+|.-|
T Consensus 109 nR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred cccccCccCCCCce-eeeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 44555667888887 44432 1 22333322 11122222223344667787665 55666777888788
Q ss_pred eC--cccCCCcceeeeeeecc----CCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecC
Q 012007 304 RR--ELQGKGTKHCLAQVLLK----HENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAG 377 (473)
Q Consensus 304 d~--~~~~~~~~~~~~~~~~~----~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 377 (473)
|. .++.......+ ..+.. .....-.+++..+|++.++.-..++|...|..+++.+..+.. ....++|.++-|
T Consensus 186 dyd~~tG~~snr~~i-~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl-Pt~qitsccFgG 263 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVI-FDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL-PTPQITSCCFGG 263 (310)
T ss_pred ecCCCcccccCccee-EEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc-CCCceEEEEecC
Confidence 84 33322121111 11111 111123455677888888888889999999998876654433 366777777765
Q ss_pred C
Q 012007 378 N 378 (473)
Q Consensus 378 ~ 378 (473)
.
T Consensus 264 k 264 (310)
T KOG4499|consen 264 K 264 (310)
T ss_pred C
Confidence 5
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.00073 Score=67.52 Aligned_cols=193 Identities=14% Similarity=0.169 Sum_probs=100.3
Q ss_pred CCcEEEeeCCccc---cccccCcccEEEEEEeCC-CCEEEEEeCCCeEEEEeCCC--CCeeeEEeeccccccceeEeecC
Q 012007 142 SKNIRVWKNLKEF---SGFKSNSGLVKAIIISGD-SNKIFTGHQDGKIRIWKVSR--KNASVHKRVGSLPTFKDYVKSSV 215 (473)
Q Consensus 142 dg~i~vwd~~~~~---~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~ 215 (473)
.+.|++-+..... ...++..+.|-.++|-.. -..+. -.-|.+.|||++- ++......+....
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~---------- 177 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPIT---------- 177 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecC----------
Confidence 3567776654322 345677888888888432 12222 2336788998864 2221111111000
Q ss_pred CCcceEEEeecceeeEeeccCCeeEEEEcC---CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEE
Q 012007 216 NPKNYVEVRRNRSVLKIRHYDAVSCLSLNA---EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVF 292 (473)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~ 292 (473)
.-...+.-+.|.| +.-++..+-.++.|++........ ..+..|...+..+++...+++.
T Consensus 178 -----------------p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~ 239 (1283)
T KOG1916|consen 178 -----------------PYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLK 239 (1283)
T ss_pred -----------------cCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhh
Confidence 0112223344443 556666677777877766544322 3344577777666655444321
Q ss_pred EEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCC----cccccceeecCc-
Q 012007 293 TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEK----HLSHGGVLRGHK- 367 (473)
Q Consensus 293 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~- 367 (473)
.. ..+|||..++..+.||.+++|-+.- ...+....+.|.
T Consensus 240 l~------------------------------------~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~ 283 (1283)
T KOG1916|consen 240 LA------------------------------------SLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK 283 (1283)
T ss_pred he------------------------------------eeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC
Confidence 11 1677888888888888877775431 111222334444
Q ss_pred ceEEEEEec---------C--CEEEEEe-CCCcEEEEecCCCCceeEE
Q 012007 368 MAVLCLAAA---------G--NLVFSGS-ADRNICLWRREESGAHSCL 403 (473)
Q Consensus 368 ~~v~~~~~~---------~--~~l~s~~-~dg~i~iwd~~~~~~~~~~ 403 (473)
.+-.|+-++ + .++++++ .+..+++|.... ++|+
T Consensus 284 ~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~---w~Cl 328 (1283)
T KOG1916|consen 284 HPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP---WQCL 328 (1283)
T ss_pred CCceeeeeccccccCCccceeEEEEecccCCcceeEeeccc---hhhh
Confidence 333444332 1 1344444 345699998765 5665
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=95.95 E-value=2.1 Score=42.96 Aligned_cols=70 Identities=16% Similarity=0.073 Sum_probs=44.6
Q ss_pred EEEEcCCCCEEEEEeCC-----C-----------CEEEEEcCCCeeeEEeecCCCceeE---------EEEcCCC----E
Q 012007 240 CLSLNAEQGLLYSGSWD-----K-----------TLKVWRISDCKCLESINAHDDAINS---------VVAGFDS----L 290 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~d-----g-----------~v~vwd~~~~~~~~~~~~~~~~v~~---------l~~~~~~----~ 290 (473)
.+++.++..+++.+... + .|.-.|+++|+....++.....+.. +....++ .
T Consensus 238 ~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~ 317 (527)
T TIGR03075 238 TGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKL 317 (527)
T ss_pred ceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEE
Confidence 34666666666665421 2 5778899999988777643222211 2222233 6
Q ss_pred EEEEeCCCcEEEEeCcccC
Q 012007 291 VFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 291 l~s~~~dg~i~vwd~~~~~ 309 (473)
++.+..+|.+.+.|.++++
T Consensus 318 v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 318 LAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred EEEeCCCceEEEEECCCCc
Confidence 7789999999999988654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.037 Score=55.96 Aligned_cols=176 Identities=11% Similarity=0.180 Sum_probs=102.6
Q ss_pred ecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCccc-CCCcceeeeeeeccCCccEEEEEEcc---CCCEEEEeCCCCc
Q 012007 274 NAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQ-GKGTKHCLAQVLLKHENAVTALAVNQ---ESAVVYCGSSDGL 347 (473)
Q Consensus 274 ~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~~~~~dg~ 347 (473)
++..+.|-.+.|.... .+. -.-|.+.|||+..- ++......+.........+.-+.|.| +.-++.++-.++.
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence 4455566666664332 222 33467888987641 22122223333344445555566655 6677888888899
Q ss_pred EEEEecCCcccccceeecCcce-------------EEEEEecCCEEEEEeCCCcEEEEecCC--CCceeEEEEecCCC-C
Q 012007 348 VNFWECEKHLSHGGVLRGHKMA-------------VLCLAAAGNLVFSGSADRNICLWRREE--SGAHSCLAVLTGHT-G 411 (473)
Q Consensus 348 i~iwd~~~~~~~~~~~~~~~~~-------------v~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~h~-~ 411 (473)
|++....+... ..+.+|... +..+++||..|+.+..||.+++|.+.- .....|+..++.|. .
T Consensus 207 i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~ 284 (1283)
T KOG1916|consen 207 IRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKH 284 (1283)
T ss_pred eeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCC
Confidence 98877654322 344445433 345889999999999999999997642 22356777888887 4
Q ss_pred ceeEEEEecCCCCCcccccCCCccEE-EEEee-CCCcEEEEEcCCCCCC
Q 012007 412 PVKCLAVEEDRDHDHEYHQKGDQRWT-VYSGS-LDKSVKVWRVSEHAPD 458 (473)
Q Consensus 412 ~V~~l~~~~~~~~~~~~~~~~~~~~~-l~s~s-~Dg~v~iW~i~~~~~~ 458 (473)
+-.|.-++.+... ....+.|. +++++ ....+++|.-..-+..
T Consensus 285 p~vC~lc~~~~~~-----~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 285 PRVCWLCHKQEIL-----VVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred Cceeeeecccccc-----CCccceeEEEEecccCCcceeEeeccchhhh
Confidence 4444444443321 11222333 33443 4566999987765544
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=95.88 E-value=1.8 Score=41.55 Aligned_cols=75 Identities=11% Similarity=0.133 Sum_probs=50.6
Q ss_pred cCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe----cC----------------C-EE
Q 012007 322 KHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA----AG----------------N-LV 380 (473)
Q Consensus 322 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~----~~----------------~-~l 380 (473)
.....+.+|+.+|.+++.++...=|.|.++|+.+... ....+|-...-+.|-. .. . ++
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v-vrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV-VRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh-hhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence 3445578899999999999988889999999987543 3455555544433321 11 1 23
Q ss_pred EEEeCCCcEEEEecCCC
Q 012007 381 FSGSADRNICLWRREES 397 (473)
Q Consensus 381 ~s~~~dg~i~iwd~~~~ 397 (473)
+-+-.-|.|.||.++.+
T Consensus 384 IyaprRg~lEvW~~~~g 400 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQG 400 (415)
T ss_pred EEeccCCeEEEEecCCC
Confidence 33456788889988873
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.76 E-value=2.6 Score=43.72 Aligned_cols=93 Identities=16% Similarity=0.129 Sum_probs=53.8
Q ss_pred ccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCC-CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE
Q 012007 162 GLVKAIIISGDSNKIFTGHQDGKIRIWKVSRK-NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 240 (473)
-.|..|.++++|++|+..|..|.+ |-.+-.. .....+.-+ . .....-...-........+...|..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g-----~-------~~i~Crt~~v~~~~~~~~~~~~i~q 151 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDG-----K-------KEINCRTVPVDERFFTSNSSLEIKQ 151 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCC-----C-------cceeEEEEEechhhccCCCCceEEE
Confidence 468999999999999998887644 4433211 000000000 0 0000000000111111135567899
Q ss_pred EEEcCC---CCEEEEEeCCCCEEEEEcCCC
Q 012007 241 LSLNAE---QGLLYSGSWDKTLKVWRISDC 267 (473)
Q Consensus 241 l~~~~~---~~~l~s~s~dg~v~vwd~~~~ 267 (473)
+.|+|. +..|++-..|+++++||+...
T Consensus 152 v~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 152 VRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 999995 578999999999999999754
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.95 Score=45.72 Aligned_cols=187 Identities=10% Similarity=0.076 Sum_probs=86.5
Q ss_pred CCCEEEEEeCCC------CEEEEEcCCCeeeEE--eecCCCceeEEEEcCCCEEEEEeCC-----CcEEEEeCcccCCCc
Q 012007 246 EQGLLYSGSWDK------TLKVWRISDCKCLES--INAHDDAINSVVAGFDSLVFTGSAD-----GTVKVWRRELQGKGT 312 (473)
Q Consensus 246 ~~~~l~s~s~dg------~v~vwd~~~~~~~~~--~~~~~~~v~~l~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~ 312 (473)
++..++.|+.++ .+..||..+.+-... +....... +++...+..++.|+.+ ..+..||....
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~---- 368 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTVFNNRIYVIGGIYNSISLNTVESWKPGES---- 368 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEEECCEEEEEeCCCCCEecceEEEEcCCCC----
Confidence 455666666542 577888876654221 11111112 2222333466666655 24667776532
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeCCC------CcEEEEecCCcccc-cceeecCcceEEEEEecCCEEEEEeC
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGSSD------GLVNFWECEKHLSH-GGVLRGHKMAVLCLAAAGNLVFSGSA 385 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~~~ 385 (473)
.+.....+....... +++. -++.+++.|+.+ ..+..||..+..-. ............+...++.+++.|+.
T Consensus 369 ~W~~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 446 (534)
T PHA03098 369 KWREEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGI 446 (534)
T ss_pred ceeeCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCc
Confidence 122111111111111 1222 256666677632 35788887653211 11111111122334456777777764
Q ss_pred CC--------cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCC-----CcEEEEEc
Q 012007 386 DR--------NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLD-----KSVKVWRV 452 (473)
Q Consensus 386 dg--------~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~D-----g~v~iW~i 452 (473)
++ .+.+||..+ ..+..+..+.........+.+ ++. +++.||.+ ..|.+||.
T Consensus 447 ~~~~~~~~~~~v~~yd~~~-~~W~~~~~~~~~r~~~~~~~~--~~~-------------iyv~GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 447 SYIDNIKVYNIVESYNPVT-NKWTELSSLNFPRINASLCIF--NNK-------------IYVVGGDKYEYYINEIEVYDD 510 (534)
T ss_pred cCCCCCcccceEEEecCCC-CceeeCCCCCcccccceEEEE--CCE-------------EEEEcCCcCCcccceeEEEeC
Confidence 32 378888876 234433322211111112222 343 66777654 46777876
Q ss_pred CCC
Q 012007 453 SEH 455 (473)
Q Consensus 453 ~~~ 455 (473)
...
T Consensus 511 ~~~ 513 (534)
T PHA03098 511 KTN 513 (534)
T ss_pred CCC
Confidence 654
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=1.1 Score=45.17 Aligned_cols=152 Identities=11% Similarity=0.098 Sum_probs=71.1
Q ss_pred CCCEEEEEeCC-----CCEEEEEcCCCeeeE--EeecCCCceeEEEEcCCCEEEEEeCC------CcEEEEeCcccCCCc
Q 012007 246 EQGLLYSGSWD-----KTLKVWRISDCKCLE--SINAHDDAINSVVAGFDSLVFTGSAD------GTVKVWRRELQGKGT 312 (473)
Q Consensus 246 ~~~~l~s~s~d-----g~v~vwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~ 312 (473)
++.+++.||.+ ..+..||..+.+-.. .+...... .+++...+..++.|+.+ ..+..||+...
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~---- 416 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVVNVNNLIYVIGGISKNDELLKTVECFSLNTN---- 416 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEEEECCEEEEECCcCCCCcccceEEEEeCCCC----
Confidence 56677777765 347778876654221 12111111 12222333455555532 35778887632
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC--------cEEEEecCCcccc-cceeecCcceEEEEEecCCEEEEE
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG--------LVNFWECEKHLSH-GGVLRGHKMAVLCLAAAGNLVFSG 383 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg--------~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~ 383 (473)
.+.....+....... +++. .++.+++.|+.++ .+.+||..+..-. ................++.+++.|
T Consensus 417 ~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~G 494 (534)
T PHA03098 417 KWSKGSPLPISHYGG-CAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVG 494 (534)
T ss_pred eeeecCCCCccccCc-eEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEc
Confidence 122211111111111 2222 2456666666432 3788888753211 111111111112233477777777
Q ss_pred eCC-----CcEEEEecCCCCceeEEEE
Q 012007 384 SAD-----RNICLWRREESGAHSCLAV 405 (473)
Q Consensus 384 ~~d-----g~i~iwd~~~~~~~~~~~~ 405 (473)
+.+ +.|.+||..+ ..+..+..
T Consensus 495 G~~~~~~~~~v~~yd~~~-~~W~~~~~ 520 (534)
T PHA03098 495 GDKYEYYINEIEVYDDKT-NTWTLFCK 520 (534)
T ss_pred CCcCCcccceeEEEeCCC-CEEEecCC
Confidence 754 4688888876 33444443
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.48 E-value=1.6 Score=42.71 Aligned_cols=118 Identities=13% Similarity=0.119 Sum_probs=68.9
Q ss_pred eccCCeeEEEEcCC----CCEEEEEeCCCCEEEEEcC-----CCeeeEEeecC-C--C--ceeEEEEcCCC-EEEEEeCC
Q 012007 233 RHYDAVSCLSLNAE----QGLLYSGSWDKTLKVWRIS-----DCKCLESINAH-D--D--AINSVVAGFDS-LVFTGSAD 297 (473)
Q Consensus 233 ~~~~~v~~l~~~~~----~~~l~s~s~dg~v~vwd~~-----~~~~~~~~~~~-~--~--~v~~l~~~~~~-~l~s~~~d 297 (473)
|....|..+.|.|- -..|++......|.||.+. ..+.+..-..+ . - --..+.|+|.. .|++-...
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 45567899999984 3356666677899999884 22322221111 1 1 12346788887 33333333
Q ss_pred CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC-CCCcEEEEecCC
Q 012007 298 GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS-SDGLVNFWECEK 355 (473)
Q Consensus 298 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~ 355 (473)
..=.+++++.... .++.-....+-|.|.+|.+||+.|+++- ..=.-+|||-..
T Consensus 134 dvSV~~sV~~d~s-----rVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 134 DVSVLPSVHCDSS-----RVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred ceeEeeeeeeCCc-----eEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 3334556553221 2222235568899999999998776653 333457888543
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.32 Score=50.90 Aligned_cols=137 Identities=9% Similarity=-0.045 Sum_probs=84.3
Q ss_pred CCeeEEEEcCCCCEEEEE--eCCCCEEEEEcCCCeeeE-----Eee------cCCCceeEEEEcCCC--EEEEEeCCCcE
Q 012007 236 DAVSCLSLNAEQGLLYSG--SWDKTLKVWRISDCKCLE-----SIN------AHDDAINSVVAGFDS--LVFTGSADGTV 300 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~--s~dg~v~vwd~~~~~~~~-----~~~------~~~~~v~~l~~~~~~--~l~s~~~dg~i 300 (473)
-++..+...+|+...++. +.+-.|..||+++...-. -+. .......++.|.|.- ..+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 345555666676654444 334478999997533211 111 122345667787764 66778889999
Q ss_pred EEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccc--ccceeecCcceEEEEEecCC
Q 012007 301 KVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLS--HGGVLRGHKMAVLCLAAAGN 378 (473)
Q Consensus 301 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~ 378 (473)
++..+.... ............++++|+|.|+.++.|-..|++.-|...-... +..........|+++.|-+.
T Consensus 181 ~V~~~~~~~------~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 181 RVKSTKQLA------QNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred hhhhhhhhh------hhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecc
Confidence 998775221 1111234456789999999999999999999999987653211 11111112467888888654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.02 E-value=4.3 Score=41.07 Aligned_cols=51 Identities=14% Similarity=0.230 Sum_probs=36.4
Q ss_pred CcEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC
Q 012007 143 KNIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKN 194 (473)
Q Consensus 143 g~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~ 194 (473)
-.|+||+.. ..+..+.-..+.+-.+.|+.+. .|+....||+++||++-...
T Consensus 64 ~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ 115 (829)
T KOG2280|consen 64 PYIRIFNISGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEF 115 (829)
T ss_pred eeEEEEeccccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhh
Confidence 358888865 4444444444588999999777 55556899999999986543
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=3.5 Score=40.98 Aligned_cols=184 Identities=12% Similarity=0.103 Sum_probs=88.2
Q ss_pred CCCEEEEEeCCC-----CEEEEEcCCCeeeE--EeecCCCceeEEEEcCCCEEEEEeCC--CcEEEEeCcccCCCcceee
Q 012007 246 EQGLLYSGSWDK-----TLKVWRISDCKCLE--SINAHDDAINSVVAGFDSLVFTGSAD--GTVKVWRRELQGKGTKHCL 316 (473)
Q Consensus 246 ~~~~l~s~s~dg-----~v~vwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~ 316 (473)
++.++++|+.++ .+..||..+.+-.. .+....... +++...+...+.|+.+ ..+..||... ..+..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v~~~~~iYviGG~~~~~sve~ydp~~----n~W~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGVPANNKLYVVGGLPNPTSVERWFHGD----AAWVN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEEEECCEEEEECCcCCCCceEEEECCC----CeEEE
Confidence 445667777543 46778887654322 222111111 2222233355566653 3577787642 12222
Q ss_pred eeeeccCCccEEEEEEccCCCEEEEeCCCC---cEEEEecCCcccc-cceeecCcceEEEEEecCCEEEEEeCCCcEEEE
Q 012007 317 AQVLLKHENAVTALAVNQESAVVYCGSSDG---LVNFWECEKHLSH-GGVLRGHKMAVLCLAAAGNLVFSGSADRNICLW 392 (473)
Q Consensus 317 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iw 392 (473)
...+.........+. -++++.+.|+.++ .+..||.++..-. ...+............++.+.+.|+ .+.+|
T Consensus 346 ~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~y 420 (480)
T PHA02790 346 MPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEFY 420 (480)
T ss_pred CCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC---ceEEe
Confidence 222221121222222 2567777777653 4677887653211 1111111112233355677667664 57789
Q ss_pred ecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCC-----CcEEEEEcCCC
Q 012007 393 RREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLD-----KSVKVWRVSEH 455 (473)
Q Consensus 393 d~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~D-----g~v~iW~i~~~ 455 (473)
|..+ +.+..+..+....... +++.. ++. +.+.||.+ .+|..||....
T Consensus 421 dp~~-~~W~~~~~m~~~r~~~-~~~v~-~~~-------------IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 421 CESS-NTWTLIDDPIYPRDNP-ELIIV-DNK-------------LLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred cCCC-CcEeEcCCCCCCcccc-EEEEE-CCE-------------EEEECCcCCCcccceEEEEECCCC
Confidence 8876 4455554443222222 23332 333 77777754 35677776644
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.99 E-value=4.4 Score=42.63 Aligned_cols=112 Identities=13% Similarity=0.116 Sum_probs=72.1
Q ss_pred EEEccCCCEEEEeCCCCcEEEEecCCcccccceeec-CcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEec-
Q 012007 330 LAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRG-HKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLT- 407 (473)
Q Consensus 330 l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~- 407 (473)
.++.|-..++++| ....+++||+.+.....+.... -...|..+...+..+++|...-.+.++..+... ..+..+.
T Consensus 939 ~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~--n~l~~fad 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRRED--NQLIVFAD 1015 (1205)
T ss_pred eEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCC--CeEEEEeC
Confidence 3555655566554 4568999999865444333222 366778888899999999877777776655432 2222332
Q ss_pred -CCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 408 -GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 408 -~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
.-...|+++.+-..+. +|.+..=|.+.+-++......
T Consensus 1016 D~~pR~Vt~~~~lD~~t--------------vagaDrfGNi~~vR~P~d~~e 1053 (1205)
T KOG1898|consen 1016 DPVPRHVTALELLDYDT--------------VAGADRFGNIAVVRIPPDVSE 1053 (1205)
T ss_pred CCccceeeEEEEecCCc--------------eeeccccCcEEEEECCCcchh
Confidence 2345688888777664 777777777777777654433
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=94.70 E-value=2.9 Score=37.10 Aligned_cols=177 Identities=12% Similarity=0.039 Sum_probs=98.2
Q ss_pred CCeeEEEEcCCCCEEEEEeCCC--CEEEEEcCCCeeeEEeecCC-CceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCc
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDK--TLKVWRISDCKCLESINAHD-DAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg--~v~vwd~~~~~~~~~~~~~~-~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 312 (473)
.-...+.|..++.++-+.+.-| .|+.+|+.+++.+....-.. -.-..++...+......=.++...+||..+-.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~--- 121 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLK--- 121 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTE---
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccce---
Confidence 3456788877777777777665 69999999998876655332 23344555555555555678899999986321
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccccee-ecCcceE---EEEEe-cCCEEEEEeCCC
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVL-RGHKMAV---LCLAA-AGNLVFSGSADR 387 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v---~~~~~-~~~~l~s~~~dg 387 (473)
....+ .....=..++ .++..|+.+.....|+++|..+......+. .....++ ..+-+ +|...|=.=...
T Consensus 122 ---~~~~~-~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td 195 (264)
T PF05096_consen 122 ---KIGTF-PYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTD 195 (264)
T ss_dssp ---EEEEE-E-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSS
T ss_pred ---EEEEE-ecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCC
Confidence 11221 1223445666 456667777667789999987643322111 1122222 22333 344444444455
Q ss_pred cEEEEecCCCCceeEEEEec---------------CCCCceeEEEEecCCCC
Q 012007 388 NICLWRREESGAHSCLAVLT---------------GHTGPVKCLAVEEDRDH 424 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~~~---------------~h~~~V~~l~~~~~~~~ 424 (473)
.|...|..++ ..+..+. ......+.||+.|....
T Consensus 196 ~I~~Idp~tG---~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~ 244 (264)
T PF05096_consen 196 RIVRIDPETG---KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR 244 (264)
T ss_dssp EEEEEETTT----BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE
T ss_pred eEEEEeCCCC---eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE
Confidence 6777777774 3333221 11356899999998774
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=94.60 E-value=3.2 Score=37.14 Aligned_cols=150 Identities=15% Similarity=0.071 Sum_probs=88.2
Q ss_pred cEEEEEEeCCCCEEEEEe---CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 163 LVKAIIISGDSNKIFTGH---QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 163 ~V~~l~~s~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
.+...+++++++.++... ....++++........ .. ....+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~--~~---------------------------------~g~~l~ 69 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRP--VL---------------------------------TGGSLT 69 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCccee--ec---------------------------------cCCccc
Confidence 689999999998877655 3344555554332211 10 122566
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEE-cCCCeee-EEeecC--CCceeEEEEcCCC-EEE---EEeCCCcEEEEeCcccCCC
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWR-ISDCKCL-ESINAH--DDAINSVVAGFDS-LVF---TGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd-~~~~~~~-~~~~~~--~~~v~~l~~~~~~-~l~---s~~~dg~i~vwd~~~~~~~ 311 (473)
.-.|++++...+....+...+++. ..+++.. ..+... ...|..+.+++|+ .++ ....++.|.+--+......
T Consensus 70 ~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g 149 (253)
T PF10647_consen 70 RPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG 149 (253)
T ss_pred cccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC
Confidence 678899977666666666667764 3333222 122211 1289999999999 333 3344677777665433322
Q ss_pred cce---eeeeeeccCCccEEEEEEccCCCEEEEeCCCCc
Q 012007 312 TKH---CLAQVLLKHENAVTALAVNQESAVVYCGSSDGL 347 (473)
Q Consensus 312 ~~~---~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~ 347 (473)
... ............++.+.|.+++.+++.+...+.
T Consensus 150 ~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 150 VPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGG 188 (253)
T ss_pred CcceeccceEecccccCcceeeeecCCCEEEEEeCCCCC
Confidence 111 112222234568899999999988777665443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.60 E-value=1.3 Score=44.55 Aligned_cols=163 Identities=15% Similarity=0.149 Sum_probs=87.9
Q ss_pred ccccccccceeeeeeecccEEEEEec-CCEEEEeeCCCcEEEeeCCcccccc-----ccCcccEEEEEEeCCCCEEEEEe
Q 012007 107 NLLSSCNGLIGSIVRKEGHIYSLAAS-GDLLYTGSDSKNIRVWKNLKEFSGF-----KSNSGLVKAIIISGDSNKIFTGH 180 (473)
Q Consensus 107 ~~~~~~~~~~~~l~~h~~~V~~~~~~-g~~l~tg~~dg~i~vwd~~~~~~~~-----~~h~~~V~~l~~s~~~~~l~s~~ 180 (473)
.+....+.+.+.+.-..+.+..+.|+ ..-|++-..||+++||+........ ......|..+.+..+|=.+.+
T Consensus 67 ~If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt-- 144 (829)
T KOG2280|consen 67 RIFNISGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLT-- 144 (829)
T ss_pred EEEeccccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEe--
Confidence 34444555666666666789999998 5578888999999999976443333 223445666666666633333
Q ss_pred CCCeEEE-EeCCCCCeeeEEeecccccc------ceeEeecCCCcceE-------------EEeecceeeEeeccCCeeE
Q 012007 181 QDGKIRI-WKVSRKNASVHKRVGSLPTF------KDYVKSSVNPKNYV-------------EVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 181 ~dg~i~v-wd~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~v~~ 240 (473)
.+|.+.+ -+.+.... ......|.. .............+ ................+..
T Consensus 145 ~~g~v~~i~~~~~~~~---~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~k 221 (829)
T KOG2280|consen 145 VSGQVILINGVEEPKL---RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVK 221 (829)
T ss_pred cCCcEEEEcCCCcchh---hhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEE
Confidence 3444433 33322111 111111100 00000000000111 1111111111112355677
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee
Q 012007 241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN 274 (473)
Q Consensus 241 l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 274 (473)
+..+|+.++|+-=..+|.|.+-+....+++..+.
T Consensus 222 i~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 222 ISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred EEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 8889999999998999999999887777766665
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.58 E-value=1.4 Score=41.71 Aligned_cols=137 Identities=9% Similarity=0.061 Sum_probs=85.9
Q ss_pred eEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCc---c
Q 012007 281 NSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH---L 357 (473)
Q Consensus 281 ~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~---~ 357 (473)
+.+.|...+..+.+...|.+.=|-+...+ ...+...-...+++|.++.|++|.+.||+--.|..|.+++.... .
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpn---dDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPN---DDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCC---CCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 44555544544444445556666554222 12223333445679999999999999999999999999998432 2
Q ss_pred cccceeecCcceEEEEEec-CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 358 SHGGVLRGHKMAVLCLAAA-GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 358 ~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
......+.....|..|.|. ..-+|.-. +..+-+|..... ...++..+.|.-.|+...|.++..
T Consensus 103 ~~~~~ck~k~~~IlGF~W~~s~e~A~i~-~~G~e~y~v~pe--krslRlVks~~~nvnWy~yc~et~ 166 (657)
T KOG2377|consen 103 EYTQECKTKNANILGFCWTSSTEIAFIT-DQGIEFYQVLPE--KRSLRLVKSHNLNVNWYMYCPETA 166 (657)
T ss_pred HHHHHhccCcceeEEEEEecCeeEEEEe-cCCeEEEEEchh--hhhhhhhhhcccCccEEEEccccc
Confidence 2222233334457777765 34455555 334777876652 344556667888899999999876
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.0045 Score=58.05 Aligned_cols=141 Identities=11% Similarity=0.168 Sum_probs=101.8
Q ss_pred EEecCCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEE-EEeCCCeEEEEeCCCCCeeeEEeecccccc
Q 012007 129 LAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIF-TGHQDGKIRIWKVSRKNASVHKRVGSLPTF 207 (473)
Q Consensus 129 ~~~~g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 207 (473)
..+.+.-++.++.+-.+..||-.+....-...++....++|.-++..++ .+-..+.+.+||+.+........-+
T Consensus 42 w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg----- 116 (615)
T KOG2247|consen 42 WRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG----- 116 (615)
T ss_pred EecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC-----
Confidence 3445556888888889999987655544444567778889988886554 4566789999999865422111100
Q ss_pred ceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcC
Q 012007 208 KDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGF 287 (473)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~ 287 (473)
.|.... +.|++....++.+...|.+.|++..+.+.+.....|...+.++++.+
T Consensus 117 -------------------------~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l 169 (615)
T KOG2247|consen 117 -------------------------TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL 169 (615)
T ss_pred -------------------------cchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence 022222 67888888999999999999999988777777766889999999999
Q ss_pred CCEEEEEeCCCcEE
Q 012007 288 DSLVFTGSADGTVK 301 (473)
Q Consensus 288 ~~~l~s~~~dg~i~ 301 (473)
+++.+.++.|..+.
T Consensus 170 Ed~vil~dcd~~L~ 183 (615)
T KOG2247|consen 170 EDYVILCDCDNTLS 183 (615)
T ss_pred cceeeecCcHHHHH
Confidence 99888877765543
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=94.51 E-value=1.9 Score=43.93 Aligned_cols=120 Identities=11% Similarity=0.088 Sum_probs=72.5
Q ss_pred cEEEEEEcc--CCCEEEEeCCCCcEEEEecCCcc----------cc--------cceeecCcceEEEEEe----cCCEEE
Q 012007 326 AVTALAVNQ--ESAVVYCGSSDGLVNFWECEKHL----------SH--------GGVLRGHKMAVLCLAA----AGNLVF 381 (473)
Q Consensus 326 ~v~~l~~~~--~~~~l~~~~~dg~i~iwd~~~~~----------~~--------~~~~~~~~~~v~~~~~----~~~~l~ 381 (473)
.|+.|.... +...|+.+..||.|.+|..+.-. .. -.....-...+..++. ..++||
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence 355554443 55789999999999999763200 00 0011111223344443 367888
Q ss_pred EEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 382 SGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 382 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
+++....|.||-............-..|...|-+|+|-++.. ...+-..|++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~-------d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDL-------DPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCC-------CCccceEEEEEeccCcEEEEEE
Confidence 888888888887654211111111123566799999999874 2222246888999999999988
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=94.40 E-value=3.7 Score=37.01 Aligned_cols=232 Identities=13% Similarity=0.103 Sum_probs=116.2
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-----eeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCe
Q 012007 164 VKAIIISGDSNKIFTGHQDGKIRIWKVSRKN-----ASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAV 238 (473)
Q Consensus 164 V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 238 (473)
-..|+++|.+.+-++...-+...+||..... ......+...+.. ......
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~-------------------------~~~~~P 79 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPL-------------------------AAEGTP 79 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCC-------------------------CCCCCc
Confidence 3578899988777777777889999986221 1111111100000 012234
Q ss_pred eEEEEcCCC------------CEEEEEeCCCCEEEEEcCCCee-----eEEee-cCCC-ceeEEEEcCC---C-EEEEEe
Q 012007 239 SCLSLNAEQ------------GLLYSGSWDKTLKVWRISDCKC-----LESIN-AHDD-AINSVVAGFD---S-LVFTGS 295 (473)
Q Consensus 239 ~~l~~~~~~------------~~l~s~s~dg~v~vwd~~~~~~-----~~~~~-~~~~-~v~~l~~~~~---~-~l~s~~ 295 (473)
+.+.|+... ..++.+++||+|.-|...-+.. ...+. .... .-..+++... . +.++--
T Consensus 80 TGiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF 159 (336)
T TIGR03118 80 TGQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF 159 (336)
T ss_pred cEEEEeCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc
Confidence 444444322 2367889999999998532221 11222 1112 2334555422 2 444445
Q ss_pred CCCcEEEEeCcccCCCcceeee------------eeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccccee
Q 012007 296 ADGTVKVWRRELQGKGTKHCLA------------QVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVL 363 (473)
Q Consensus 296 ~dg~i~vwd~~~~~~~~~~~~~------------~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 363 (473)
..++|.++|-............ ....+..--|+-..-.++.+.=+.|..-|.|-+||+..........
T Consensus 160 ~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as 239 (336)
T TIGR03118 160 RQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVAS 239 (336)
T ss_pred CCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEecc
Confidence 6899999986532110000000 0000011112222223333333344556789999987543221111
Q ss_pred ecCcc--eEEEEEe------cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCC------CceeEEEEecCCC
Q 012007 364 RGHKM--AVLCLAA------AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHT------GPVKCLAVEEDRD 423 (473)
Q Consensus 364 ~~~~~--~v~~~~~------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~------~~V~~l~~~~~~~ 423 (473)
.+.-. .-+.++| .+.+|+---.||+|..||..++ +.+..+..-. ..++.|+|.....
T Consensus 240 ~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG---~~~g~L~~~~G~pi~i~GLWgL~fGng~~ 310 (336)
T TIGR03118 240 SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSG---AQLGQLLDPDNHPVKVDGLWSLTFGNGVS 310 (336)
T ss_pred CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCC---ceeeeecCCCCCeEEecCeEEeeeCCCcC
Confidence 11111 2233433 4778887778999999999874 3344443322 2467888887543
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.39 E-value=1.9 Score=43.49 Aligned_cols=114 Identities=11% Similarity=0.130 Sum_probs=70.5
Q ss_pred ccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe----cCCEEEEEeCCCcEEEEecC-----
Q 012007 325 NAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA----AGNLVFSGSADRNICLWRRE----- 395 (473)
Q Consensus 325 ~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~s~~~dg~i~iwd~~----- 395 (473)
..++-+.-+.-++..++-+....+.|||.+...............|..+.| +++.+++.|..+.|.+|.-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344455555555655555556689999998755332222244566766654 68888888889999998532
Q ss_pred -CCCceeEEEEe--cCCC-CceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 396 -ESGAHSCLAVL--TGHT-GPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 396 -~~~~~~~~~~~--~~h~-~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
.+..+..+..+ ..|+ .+|.+..|.++|. |+.|+ ++.+.|++-.
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~--------------LvV~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT--------------LVVGS-GNQLFVFDKW 156 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCe--------------EEEEe-CCEEEEECCC
Confidence 11223333332 3444 5899999999996 44443 3467777643
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.61 Score=48.99 Aligned_cols=156 Identities=10% Similarity=-0.039 Sum_probs=90.9
Q ss_pred ccEEEEEEeCCCCEEEEE--eCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 162 GLVKAIIISGDSNKIFTG--HQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
-+|..+...+|+...+.. +.+-.|..+|+.............+. .....+.......
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~---------------------~s~ts~ek~vf~~ 159 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLK---------------------NSATSFEKPVFQL 159 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccc---------------------cccchhccccccc
Confidence 456666667776654443 33447888998765432211100000 0001111334456
Q ss_pred EEEEcCCC-CEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeee
Q 012007 240 CLSLNAEQ-GLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLA 317 (473)
Q Consensus 240 ~l~~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 317 (473)
++.|+|.- ...++...|+.|++..+........--.....+++++|+|.| +++.|-..|++.-|......+....++
T Consensus 160 ~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~P- 238 (1405)
T KOG3630|consen 160 KNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEP- 238 (1405)
T ss_pred cccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCC-
Confidence 78888843 235566778899888775433222212245678999999999 899999999999997653321111111
Q ss_pred eeeccCCccEEEEEEccCCCEEEE
Q 012007 318 QVLLKHENAVTALAVNQESAVVYC 341 (473)
Q Consensus 318 ~~~~~~~~~v~~l~~~~~~~~l~~ 341 (473)
.......|.+|+|-....++++
T Consensus 239 --p~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 239 --PVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred --CcCCCcceeEEEEecceeEEEE
Confidence 1111578999999877666655
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.06 E-value=1.9 Score=43.48 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=69.8
Q ss_pred eEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee-cCCCceeEEEEc--CCC-EEEEEeCCCcEEEEeCccc---CCC
Q 012007 239 SCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN-AHDDAINSVVAG--FDS-LVFTGSADGTVKVWRRELQ---GKG 311 (473)
Q Consensus 239 ~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~~--~~~-~l~s~~~dg~i~vwd~~~~---~~~ 311 (473)
.-+.-+.-++..++-+....+.|||.+.+....+-. ...+.|.++.|. |++ .+++.+....|.+|--... ...
T Consensus 33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~ 112 (631)
T PF12234_consen 33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG 112 (631)
T ss_pred ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence 334444444444444445679999999887544333 357789999985 444 7778888889988853210 111
Q ss_pred cceeeeee--eccCC-ccEEEEEEccCCCEEEEeCCCCcEEEEec
Q 012007 312 TKHCLAQV--LLKHE-NAVTALAVNQESAVVYCGSSDGLVNFWEC 353 (473)
Q Consensus 312 ~~~~~~~~--~~~~~-~~v~~l~~~~~~~~l~~~~~dg~i~iwd~ 353 (473)
........ +..+. .+|.+..|.++|.+++.+ ++.+.|+|-
T Consensus 113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred cccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 11222221 22333 578899999999877655 357888874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=94.04 E-value=9.2 Score=40.17 Aligned_cols=214 Identities=8% Similarity=0.048 Sum_probs=106.6
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE-E--EEcCCCCE
Q 012007 173 SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC-L--SLNAEQGL 249 (473)
Q Consensus 173 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l--~~~~~~~~ 249 (473)
+..|+.++.++.|.-.|..+++..-........... ..........+... ....... + .-...+..
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~-~~~~~cRGvay~~~----------p~~~~~~~~~~~p~~~~~r 262 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAG-RQHQTCRGVSYYDA----------PAAAAGPAAPAAPADCARR 262 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccc-cccccccceEEecC----------CcccccccccccccccCCE
Confidence 447777888888989998888876655443211100 00000000000000 0000000 0 00013467
Q ss_pred EEEEeCCCCEEEEEcCCCeeeEEeecCCCcee-------------EEEEcC---CCEEEEEeC----------CCcEEEE
Q 012007 250 LYSGSWDKTLKVWRISDCKCLESINAHDDAIN-------------SVVAGF---DSLVFTGSA----------DGTVKVW 303 (473)
Q Consensus 250 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~-------------~l~~~~---~~~l~s~~~----------dg~i~vw 303 (473)
++.++.|+.|.-.|.++|+.+..+... +.|. .+...| ++.+++|+. +|.|+-+
T Consensus 263 V~~~T~Dg~LiALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 263 IILPTSDARLIALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEEecCCCeEEEEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 888999999999999999988776421 1110 011111 356666643 6889999
Q ss_pred eCcccCCCcceeee-----------eeeccCCccE-EEEEEccCCCEEEEeCCC------------------CcEEEEec
Q 012007 304 RRELQGKGTKHCLA-----------QVLLKHENAV-TALAVNQESAVVYCGSSD------------------GLVNFWEC 353 (473)
Q Consensus 304 d~~~~~~~~~~~~~-----------~~~~~~~~~v-~~l~~~~~~~~l~~~~~d------------------g~i~iwd~ 353 (473)
|.++++..=..... .........+ ..++++++..+++.+..+ +.|.-.|.
T Consensus 342 Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~ 421 (764)
T TIGR03074 342 DVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDA 421 (764)
T ss_pred ECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeC
Confidence 98765431111000 0000000111 345666665555554322 23444455
Q ss_pred CCcccccceee-cCc---------ceEEEEEe-cCC---EEEEEeCCCcEEEEecCCCC
Q 012007 354 EKHLSHGGVLR-GHK---------MAVLCLAA-AGN---LVFSGSADRNICLWRREESG 398 (473)
Q Consensus 354 ~~~~~~~~~~~-~~~---------~~v~~~~~-~~~---~l~s~~~dg~i~iwd~~~~~ 398 (473)
++++..-.... .|. .....+.. +|+ .++.++.+|.+.++|.++++
T Consensus 422 ~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 422 TTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred CCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 55433211111 121 11223333 453 79999999999999999854
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.97 E-value=9.4 Score=40.06 Aligned_cols=240 Identities=10% Similarity=0.078 Sum_probs=118.4
Q ss_pred cEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEE
Q 012007 144 NIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEV 223 (473)
Q Consensus 144 ~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (473)
.||+++-......+.. .+.++....+.+...++.++.++.+...++...........
T Consensus 471 ~iRl~ss~~~~~~W~~-p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~---------------------- 527 (1096)
T KOG1897|consen 471 SIRLVSSAGLRSEWRP-PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHK---------------------- 527 (1096)
T ss_pred cEEEEcchhhhhcccC-CCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeh----------------------
Confidence 4666665534444443 34455555555666777777777777777665542111111
Q ss_pred eecceeeEeeccCCeeEEEEcCC---C---CEEEEEeCCCCEEEEEcC-CCeeeEEe--ec--CCCceeEEEEcC-CCEE
Q 012007 224 RRNRSVLKIRHYDAVSCLSLNAE---Q---GLLYSGSWDKTLKVWRIS-DCKCLESI--NA--HDDAINSVVAGF-DSLV 291 (473)
Q Consensus 224 ~~~~~~~~~~~~~~v~~l~~~~~---~---~~l~s~s~dg~v~vwd~~-~~~~~~~~--~~--~~~~v~~l~~~~-~~~l 291 (473)
.....|.|+.++|- . ++++.|.++..+.+.-.- +...+... .. -...|....+-. .++|
T Consensus 528 ---------~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yL 598 (1096)
T KOG1897|consen 528 ---------EFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYL 598 (1096)
T ss_pred ---------eecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEE
Confidence 14568999999973 2 378999988876665432 33222221 11 112233334434 4489
Q ss_pred EEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEE
Q 012007 292 FTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVL 371 (473)
Q Consensus 292 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 371 (473)
+++..||.+..|-+..... ...-.+...-...++.--.|+..++.-+.+..|.-..+|..+...............+.
T Consensus 599 lvalgdG~l~~fv~d~~tg--~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c 676 (1096)
T KOG1897|consen 599 LVALGDGALLYFVLDINTG--QLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMC 676 (1096)
T ss_pred EEEcCCceEEEEEEEcccc--eEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhc
Confidence 9999999998886653211 00001111112334444455554443334445555556654432221111111111223
Q ss_pred EEEec--CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEec
Q 012007 372 CLAAA--GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEE 420 (473)
Q Consensus 372 ~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~ 420 (473)
.+..+ +..|+.+. .+.+.+..++.-+. -.++++.- ......+++.+
T Consensus 677 ~f~s~a~~d~l~~~~-~~~l~i~tid~iqk-l~irtvpl-~~~prrI~~q~ 724 (1096)
T KOG1897|consen 677 PFNSDAYPDSLASAN-GGALTIGTIDEIQK-LHIRTVPL-GESPRRICYQE 724 (1096)
T ss_pred ccccccCCceEEEec-CCceEEEEecchhh-cceeeecC-CCChhheEecc
Confidence 33322 44555555 45677777665221 11222222 23456666665
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=93.97 E-value=2.8 Score=39.99 Aligned_cols=107 Identities=8% Similarity=0.100 Sum_probs=59.8
Q ss_pred CCeeEEEEcCCCCEEEEEe-----------CCC-CEEEEEcCC--Cee--eEEeecCCCceeEEEEcCCCEEEEEeCCCc
Q 012007 236 DAVSCLSLNAEQGLLYSGS-----------WDK-TLKVWRISD--CKC--LESINAHDDAINSVVAGFDSLVFTGSADGT 299 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s-----------~dg-~v~vwd~~~--~~~--~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~ 299 (473)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++. ...+.........+++.+++ |+++.....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i 92 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDI 92 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeE
Confidence 3456789999998776642 223 677776543 332 23333334456788888888 555555543
Q ss_pred EEEEeCcccCCCc-c-eeeeeeecc----CCccEEEEEEccCCCEEEEeC
Q 012007 300 VKVWRRELQGKGT-K-HCLAQVLLK----HENAVTALAVNQESAVVYCGS 343 (473)
Q Consensus 300 i~vwd~~~~~~~~-~-~~~~~~~~~----~~~~v~~l~~~~~~~~l~~~~ 343 (473)
.++.|........ . ..+...+.. +......++|.|||.+.++-+
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 4444554322211 1 122222222 234477899999998766544
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=93.86 E-value=2 Score=44.45 Aligned_cols=28 Identities=25% Similarity=0.111 Sum_probs=21.7
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCCEEEEEc
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg~v~vwd~ 264 (473)
-.|..|.++++|.+|+..|..| |.|..+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~L 112 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLEL 112 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence 3688899999999999988754 555554
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.85 E-value=4.6 Score=36.11 Aligned_cols=157 Identities=12% Similarity=0.098 Sum_probs=94.1
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec--CCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCC
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA--HDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
-.+-+..+.++. ++.+.+.++.-++|.|+.+...-..+.. -.+.-.++.. ..++...+..|.-+.+.|+....
T Consensus 85 ~~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v-sGn~aYVadlddgfLivdvsdps-- 159 (370)
T COG5276 85 ARDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV-SGNYAYVADLDDGFLIVDVSDPS-- 159 (370)
T ss_pred hhhhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe-cCCEEEEeeccCcEEEEECCCCC--
Confidence 445566677754 6788888888999999987654333221 1133334444 34466677767777788987432
Q ss_pred cceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcc-eEEEEEecCCEEEEEeCCCcEE
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKM-AVLCLAAAGNLVFSGSADRNIC 390 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~l~s~~~dg~i~ 390 (473)
...+..........-..++.+ |++-+.+..|+-+.+-|+.....+...-.-... .+..+++.+++....-.+--+.
T Consensus 160 -sP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvl 236 (370)
T COG5276 160 -SPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVL 236 (370)
T ss_pred -CceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceE
Confidence 222223333333334566665 667777888999999999876555322221122 5666777666655555555677
Q ss_pred EEecCCCC
Q 012007 391 LWRREESG 398 (473)
Q Consensus 391 iwd~~~~~ 398 (473)
+-|..+..
T Consensus 237 ivd~s~~s 244 (370)
T COG5276 237 IVDVSGPS 244 (370)
T ss_pred EEecCCCC
Confidence 77777643
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.85 E-value=4.9 Score=39.94 Aligned_cols=141 Identities=11% Similarity=0.056 Sum_probs=67.1
Q ss_pred CCCEEEEEeCC--CCEEEEEcCCCeee--EEeecCCCceeEEEEcCCCEEEEEeCCC---cEEEEeCcccCCCcceeeee
Q 012007 246 EQGLLYSGSWD--KTLKVWRISDCKCL--ESINAHDDAINSVVAGFDSLVFTGSADG---TVKVWRRELQGKGTKHCLAQ 318 (473)
Q Consensus 246 ~~~~l~s~s~d--g~v~vwd~~~~~~~--~~~~~~~~~v~~l~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~ 318 (473)
++.+.+.|+.+ ..+..||..+.+-. ..+...... .+++...+...+.|+.++ .+..||.+.. .+....
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~-~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~----~W~~~~ 392 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCN-PAVASINNVIYVIGGHSETDTTTEYLLPNHD----QWQFGP 392 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcc-cEEEEECCEEEEecCcCCCCccEEEEeCCCC----EEEeCC
Confidence 56666777653 35788887654322 222211111 122333333555666543 4667887532 222222
Q ss_pred eeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccc-cceeecCcceEEEEEecCCEEEEEeCC-----CcEEEE
Q 012007 319 VLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSH-GGVLRGHKMAVLCLAAAGNLVFSGSAD-----RNICLW 392 (473)
Q Consensus 319 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~~~d-----g~i~iw 392 (473)
.+.........++ -++.+.+.| |.+.+||.++..-. ...+............+++..+.||.+ ..|..|
T Consensus 393 ~m~~~r~~~~~~~--~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Y 467 (480)
T PHA02790 393 STYYPHYKSCALV--FGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVY 467 (480)
T ss_pred CCCCccccceEEE--ECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEE
Confidence 2211111112222 345666666 35778887653211 111111122233345678888888754 346677
Q ss_pred ecCC
Q 012007 393 RREE 396 (473)
Q Consensus 393 d~~~ 396 (473)
|..+
T Consensus 468 d~~~ 471 (480)
T PHA02790 468 NNRT 471 (480)
T ss_pred ECCC
Confidence 7665
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=93.81 E-value=5.9 Score=40.58 Aligned_cols=104 Identities=12% Similarity=0.051 Sum_probs=67.7
Q ss_pred CCCEEEEEeCCCCEEEEEcCC-------C----e---------eeEEeecCCCceeEEEEc--CCC-EEEEEeCCCcEEE
Q 012007 246 EQGLLYSGSWDKTLKVWRISD-------C----K---------CLESINAHDDAINSVVAG--FDS-LVFTGSADGTVKV 302 (473)
Q Consensus 246 ~~~~l~s~s~dg~v~vwd~~~-------~----~---------~~~~~~~~~~~v~~l~~~--~~~-~l~s~~~dg~i~v 302 (473)
+...|+.+..||.|.+|.+++ . + +...+. -...+++++++ ... +||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 556899999999999997631 1 0 111122 23478889887 444 7777777888888
Q ss_pred EeCcccCCCcceeeeeeeccCCccEEEEEEccCC---C---EEEEeCCCCcEEEEec
Q 012007 303 WRRELQGKGTKHCLAQVLLKHENAVTALAVNQES---A---VVYCGSSDGLVNFWEC 353 (473)
Q Consensus 303 wd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---~---~l~~~~~dg~i~iwd~ 353 (473)
|-......... ......+...|.+|+|-++. . .|++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~---~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFY---HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccc---cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 86653211111 11122366678889987643 2 7888999999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=93.74 E-value=6 Score=37.06 Aligned_cols=60 Identities=20% Similarity=0.190 Sum_probs=38.9
Q ss_pred cCCEEEEEeCCCcEEEEecCCCCceeEEEE-ecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEE
Q 012007 376 AGNLVFSGSADRNICLWRREESGAHSCLAV-LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVK 448 (473)
Q Consensus 376 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~ 448 (473)
.|.+|++.-..+.|....++.......... +......+..|++.||+. ++++-+.+|.|.
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~-------------Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA-------------LYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE-------------EEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe-------------EEEEECCCCeEe
Confidence 356777777677888888865332222222 344555899999999998 677767788764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.67 E-value=4.9 Score=35.80 Aligned_cols=205 Identities=14% Similarity=0.195 Sum_probs=101.0
Q ss_pred EEEecCCEEEEeeC-----CCcEEEeeCCcc---ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEE-eCCCCCeeeE
Q 012007 128 SLAASGDLLYTGSD-----SKNIRVWKNLKE---FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIW-KVSRKNASVH 198 (473)
Q Consensus 128 ~~~~~g~~l~tg~~-----dg~i~vwd~~~~---~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw-d~~~~~~~~~ 198 (473)
.+++||.+|+..-. -|.|-|||.... +..+..|.-.-..+.|.+||+.|+.+. |-|..- |....+....
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchh
Confidence 57889999887643 378999997643 445667777778899999999888763 334443 2211111000
Q ss_pred EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCC-----EEEEEcCCCeeeEEe
Q 012007 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKT-----LKVWRISDCKCLESI 273 (473)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~-----v~vwd~~~~~~~~~~ 273 (473)
.... .++........+++ +..+-...+.-.|..++..+||..++.+-..|. -.+=-...++.+.-+
T Consensus 198 sMeP------Slvlld~atG~lie---kh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~ 268 (366)
T COG3490 198 SMEP------SLVLLDAATGNLIE---KHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFL 268 (366)
T ss_pred hcCc------cEEEEeccccchhh---hccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCccc
Confidence 0000 00000000000000 000000013445777888888776665543332 111112234444333
Q ss_pred ec-------CCCceeEEEEcCC-CEEEEEe-CCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC
Q 012007 274 NA-------HDDAINSVVAGFD-SLVFTGS-ADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS 344 (473)
Q Consensus 274 ~~-------~~~~v~~l~~~~~-~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~ 344 (473)
.. ....|-+|+.+.+ ++++..+ ..+...+||..++.. .. ...-..+..++- ...-+++.+.
T Consensus 269 ~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~v-----v~---~a~l~daaGva~--~~~gf~vssg 338 (366)
T COG3490 269 DLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAV-----VS---EAALPDAAGVAA--AKGGFAVSSG 338 (366)
T ss_pred CCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcE-----Ee---ccccccccccee--ccCceEEecC
Confidence 22 2235667777644 4544444 455678899875431 00 000111222222 3334566677
Q ss_pred CCcEEEEec
Q 012007 345 DGLVNFWEC 353 (473)
Q Consensus 345 dg~i~iwd~ 353 (473)
+|.+.++.-
T Consensus 339 ~G~~~~~s~ 347 (366)
T COG3490 339 QGRIIFYSR 347 (366)
T ss_pred CceEEeccc
Confidence 888888854
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=93.60 E-value=7.3 Score=37.54 Aligned_cols=283 Identities=10% Similarity=0.042 Sum_probs=137.3
Q ss_pred CCEEEEeeCCCcEEEeeCCccc-c-----ccccCcccEEEEEEeC-----CCCEEEEEeCCCeEEEEeCCCCCeeeEEee
Q 012007 133 GDLLYTGSDSKNIRVWKNLKEF-S-----GFKSNSGLVKAIIISG-----DSNKIFTGHQDGKIRIWKVSRKNASVHKRV 201 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~~~~-~-----~~~~h~~~V~~l~~s~-----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 201 (473)
.+.|++|+..|.++||+....- . .-..-..+|..|+.-. +...||. -.-..+.||.+......
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~----- 110 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGT----- 110 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCC-----
Confidence 4689999999999999864211 1 1112346788887632 2234444 45567888877322110
Q ss_pred ccccccceeEeecCCCcceEEEeecceeeEeecc--CCeeEEEEcC----C-CCEEEEEeCCCCEEEEEcCCCeeeEEee
Q 012007 202 GSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY--DAVSCLSLNA----E-QGLLYSGSWDKTLKVWRISDCKCLESIN 274 (473)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~l~~~~----~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 274 (473)
........+. ....|. .....++.-+ . ..++.+-+.||.+.+++-+.....+.+.
T Consensus 111 -------------~~~g~~~~L~-----~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp 172 (418)
T PF14727_consen 111 -------------VEHGNQYQLE-----LIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP 172 (418)
T ss_pred -------------cccCcEEEEE-----EEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC
Confidence 0000000000 001121 1222233322 1 4688889999999999976554444444
Q ss_pred cCCCceeEEEEcCC-CEEEEEeCCCcEEEEeCcccCCC----------------cceeeeeeeccCCccEEEEE---Ecc
Q 012007 275 AHDDAINSVVAGFD-SLVFTGSADGTVKVWRRELQGKG----------------TKHCLAQVLLKHENAVTALA---VNQ 334 (473)
Q Consensus 275 ~~~~~v~~l~~~~~-~~l~s~~~dg~i~vwd~~~~~~~----------------~~~~~~~~~~~~~~~v~~l~---~~~ 334 (473)
. ---.-.+.+.+. +.+++++.+..+..|....-... .+.........-...+..|. ++.
T Consensus 173 ~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~ 251 (418)
T PF14727_consen 173 D-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSS 251 (418)
T ss_pred C-CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCC
Confidence 3 111223344444 47888888888888865311000 00000111111122333333 222
Q ss_pred CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe----cC---CEEEEEeCCCcEEEEecCCCCceeEEEEec
Q 012007 335 ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA----AG---NLVFSGSADRNICLWRREESGAHSCLAVLT 407 (473)
Q Consensus 335 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~----~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 407 (473)
....+++-+ ...+.+.+-.........+.........+.. .+ ..++.++.++++.||.=.+ ++..-.
T Consensus 252 ~~~~IvvLg-er~Lf~l~~~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~-----L~WsA~ 325 (418)
T PF14727_consen 252 SESDIVVLG-ERSLFCLKDNGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT-----LVWSAQ 325 (418)
T ss_pred CCceEEEEe-cceEEEEcCCCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe-----EEEecC
Confidence 222222222 2345555443322222222222211111111 22 2588899999999996433 222222
Q ss_pred CCCCceeEEEEec--CCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCc
Q 012007 408 GHTGPVKCLAVEE--DRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDL 459 (473)
Q Consensus 408 ~h~~~V~~l~~~~--~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~ 459 (473)
....+| +|.... +-+. +|++-+.+|.+.+-=+.+.....
T Consensus 326 l~~~PV-al~v~~~~~~~G------------~IV~Ls~~G~L~v~YLGTdPs~~ 366 (418)
T PF14727_consen 326 LPHVPV-ALSVANFNGLKG------------LIVSLSDEGQLSVSYLGTDPSLF 366 (418)
T ss_pred CCCCCE-EEEecccCCCCc------------eEEEEcCCCcEEEEEeCCCCccc
Confidence 222333 343332 1111 89999999999998887765433
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.48 E-value=2 Score=40.67 Aligned_cols=104 Identities=10% Similarity=0.097 Sum_probs=70.7
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee----EEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccC
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL----ESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~----~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~ 309 (473)
..++|.++.|++|.+.|++--.|.+|.+++....+.. .+.+.....|...+|....-++..+..| +.+|-..
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~--- 140 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVL--- 140 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEc---
Confidence 5679999999999999999999999999987433322 2333445568888888776555554443 5566544
Q ss_pred CCcceeeeeeeccCCccEEEEEEccCCCEEEEeC
Q 012007 310 KGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS 343 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 343 (473)
...........|...|.-..|.++.+.++.++
T Consensus 141 --pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 141 --PEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred --hhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 22223445566777888888888776554443
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.76 Score=40.00 Aligned_cols=69 Identities=17% Similarity=0.178 Sum_probs=51.6
Q ss_pred ccEEEEEecCCEEEEeeCCCcEEEeeCCccccc---------cc-------cCcccEEEEEEeCCCCEEEEEeCCCeEEE
Q 012007 124 GHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSG---------FK-------SNSGLVKAIIISGDSNKIFTGHQDGKIRI 187 (473)
Q Consensus 124 ~~V~~~~~~g~~l~tg~~dg~i~vwd~~~~~~~---------~~-------~h~~~V~~l~~s~~~~~l~s~~~dg~i~v 187 (473)
..+..+..++++|++-+.+|.+++||+.+.... +. .....|..+.++.+|.-|++-+ +|....
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~ 91 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYS 91 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEE
Confidence 355668889999999999999999997643221 11 3557789999998997777654 578899
Q ss_pred EeCCCC
Q 012007 188 WKVSRK 193 (473)
Q Consensus 188 wd~~~~ 193 (473)
|+.+-+
T Consensus 92 y~~~L~ 97 (219)
T PF07569_consen 92 YSPDLG 97 (219)
T ss_pred eccccc
Confidence 987644
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.76 Score=38.40 Aligned_cols=38 Identities=8% Similarity=-0.024 Sum_probs=32.3
Q ss_pred CceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 411 GPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 411 ~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
..|..++|+|.|- ...++++|+....+|.|.||.-...
T Consensus 86 ~~vv~~aWSP~Gl-------~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGL-------GPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCC-------CCCCceEEEEEcCCCeEEEEecCCC
Confidence 3799999999886 4566789999999999999997754
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.42 Score=28.92 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=26.4
Q ss_pred ccEEEEEEccCC---CEEEEeCCCCcEEEEecCCc
Q 012007 325 NAVTALAVNQES---AVVYCGSSDGLVNFWECEKH 356 (473)
Q Consensus 325 ~~v~~l~~~~~~---~~l~~~~~dg~i~iwd~~~~ 356 (473)
++|.++.|+|+. .+|+.+-.-|.|.|+|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468899999844 58888888899999999853
|
It contains a characteristic DLL sequence motif. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=93.17 E-value=13 Score=39.13 Aligned_cols=63 Identities=8% Similarity=-0.028 Sum_probs=43.7
Q ss_pred CCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCc--------eeEEEEc-----------------CCCEEEEEeCCCcEE
Q 012007 247 QGLLYSGSWDKTLKVWRISDCKCLESINAHDDA--------INSVVAG-----------------FDSLVFTGSADGTVK 301 (473)
Q Consensus 247 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~--------v~~l~~~-----------------~~~~l~s~~~dg~i~ 301 (473)
+..|+.++.++.|.-.|..+|+.+..+...... ...+.+. .++.++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 567888888899999999999988877543211 1112221 123788888999999
Q ss_pred EEeCcccC
Q 012007 302 VWRRELQG 309 (473)
Q Consensus 302 vwd~~~~~ 309 (473)
-.|.++++
T Consensus 274 ALDA~TGk 281 (764)
T TIGR03074 274 ALDADTGK 281 (764)
T ss_pred EEECCCCC
Confidence 88887554
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.16 E-value=6.1 Score=35.41 Aligned_cols=163 Identities=11% Similarity=0.059 Sum_probs=103.0
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecC-CCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCC
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH-DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
-...+.++.|+|+.+.|++......-.||=..+|+.++++... -.....|.+..++ ++++--.++.+.++.+..+...
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~ 163 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV 163 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence 4455999999999999999888888888877889999887632 2233456666666 4444455777877776543211
Q ss_pred c---c-eeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccc--cceeecCc-------ceEEEEEec--
Q 012007 312 T---K-HCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSH--GGVLRGHK-------MAVLCLAAA-- 376 (473)
Q Consensus 312 ~---~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~-------~~v~~~~~~-- 376 (473)
. . ..........+.....++|.|....|+.+-+-.=+.||........ ......+. ..+..+.++
T Consensus 164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~ 243 (316)
T COG3204 164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAI 243 (316)
T ss_pred EeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCC
Confidence 1 0 1111122222667889999999988888887777777766532211 01111111 112333444
Q ss_pred -CCEEEEEeCCCcEEEEecCC
Q 012007 377 -GNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 377 -~~~l~s~~~dg~i~iwd~~~ 396 (473)
+.+|+-+.+++.+.-.|...
T Consensus 244 ~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 244 TNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred CCcEEEEecCCceEEEEecCC
Confidence 67788888888888888765
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=93.16 E-value=8.6 Score=37.06 Aligned_cols=146 Identities=19% Similarity=0.228 Sum_probs=80.4
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-----CC
Q 012007 173 SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-----EQ 247 (473)
Q Consensus 173 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-----~~ 247 (473)
...|++|+..|.++||+......... ...+...-..+|..+..-. +.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~----------------------------~lllE~~l~~PILqv~~G~F~s~~~~ 88 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPE----------------------------DLLLETQLKDPILQVECGKFVSGSED 88 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCc----------------------------cEEEEEecCCcEEEEEeccccCCCCc
Confidence 45899999999999999855432110 0111112444555555432 22
Q ss_pred CEEEEEeCCCCEEEEEcCC--Ce-------eeEEeecCCC--ceeEEEEcC------CCEEEEEeCCCcEEEEeCcccCC
Q 012007 248 GLLYSGSWDKTLKVWRISD--CK-------CLESINAHDD--AINSVVAGF------DSLVFTGSADGTVKVWRRELQGK 310 (473)
Q Consensus 248 ~~l~s~s~dg~v~vwd~~~--~~-------~~~~~~~~~~--~v~~l~~~~------~~~l~s~~~dg~i~vwd~~~~~~ 310 (473)
..||+ -.-..+.||.+.. +. .+..+..|.- ....+++.+ ..++.+-+.||.+.+|+-+.
T Consensus 89 ~~LaV-LhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~--- 164 (418)
T PF14727_consen 89 LQLAV-LHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES--- 164 (418)
T ss_pred ceEEE-ecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc---
Confidence 23333 3446677776621 11 1222222221 122222211 13788899999999998652
Q ss_pred CcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC
Q 012007 311 GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 354 (473)
..... .....--.-.++|.+....+++++.+..|..|...
T Consensus 165 ---~~f~~-~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 165 ---FAFSR-FLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred ---EEEEE-EcCCCCCCcCeEEeecCCEEEEecCceeEEEecHH
Confidence 11111 12222223457888888889999999999998753
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=93.08 E-value=7.9 Score=36.45 Aligned_cols=51 Identities=8% Similarity=-0.007 Sum_probs=26.8
Q ss_pred CcEEEEecCCcccccce----eecCcceEEEEEecCCEEEEEeCC--------------CcEEEEecCC
Q 012007 346 GLVNFWECEKHLSHGGV----LRGHKMAVLCLAAAGNLVFSGSAD--------------RNICLWRREE 396 (473)
Q Consensus 346 g~i~iwd~~~~~~~~~~----~~~~~~~v~~~~~~~~~l~s~~~d--------------g~i~iwd~~~ 396 (473)
..|.+||..+..-.... .........+...++.+++.|+.. +.|..||..+
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~ 285 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTET 285 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCc
Confidence 45888888753211111 111112223445567777787742 2567777766
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=93.07 E-value=6.3 Score=35.28 Aligned_cols=137 Identities=10% Similarity=-0.008 Sum_probs=76.6
Q ss_pred EEEecCCEEEEee---CCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEe-CCCCCeeeEEeecc
Q 012007 128 SLAASGDLLYTGS---DSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWK-VSRKNASVHKRVGS 203 (473)
Q Consensus 128 ~~~~~g~~l~tg~---~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~~~~~ 203 (473)
+++++|+.+|.-. ....++++.......... ....+..-.|++++...+....+...+++. ...+.... ..+..
T Consensus 30 AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~-~~v~~ 107 (253)
T PF10647_consen 30 AVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP-VEVDW 107 (253)
T ss_pred EECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee-EEecc
Confidence 5666666554444 233455554443333322 223677888999986666666566666664 22222111 11110
Q ss_pred ccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe---CCCCEEEEEcC---CC------eeeE
Q 012007 204 LPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS---WDKTLKVWRIS---DC------KCLE 271 (473)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s---~dg~v~vwd~~---~~------~~~~ 271 (473)
. .-...|..+.++|||..++... .++.|.+--+. .+ ..+.
T Consensus 108 ~----------------------------~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~ 159 (253)
T PF10647_consen 108 P----------------------------GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRR 159 (253)
T ss_pred c----------------------------ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceE
Confidence 0 0112899999999999887766 34677776553 23 1112
Q ss_pred EeecCCCceeEEEEcCCCEEEEE
Q 012007 272 SINAHDDAINSVVAGFDSLVFTG 294 (473)
Q Consensus 272 ~~~~~~~~v~~l~~~~~~~l~s~ 294 (473)
........+..+.|.+++.|+..
T Consensus 160 ~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 160 VAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred ecccccCcceeeeecCCCEEEEE
Confidence 22233568899999999844433
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.41 E-value=9.6 Score=35.75 Aligned_cols=153 Identities=8% Similarity=0.005 Sum_probs=77.9
Q ss_pred cCCeeEEEEcCCCCEEEEEeCCCCEEE-EEcCCCeeeEEe-ecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCc
Q 012007 235 YDAVSCLSLNAEQGLLYSGSWDKTLKV-WRISDCKCLESI-NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 235 ~~~v~~l~~~~~~~~l~s~s~dg~v~v-wd~~~~~~~~~~-~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 312 (473)
...+.++.+.+++.+++++. .|.+.. +| ..++.-..+ ..-...+.++.+.+++.++..+..|.+.+=..+. + .
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~-G--~ 246 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDD-L--E 246 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCC-C--C
Confidence 34678888999887666555 455443 22 122222222 2334678888888888655566777765322221 1 1
Q ss_pred ceeeeeee-ccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccccee--ecCcceEEEEE-ecCCEEEEEeCCCc
Q 012007 313 KHCLAQVL-LKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVL--RGHKMAVLCLA-AAGNLVFSGSADRN 388 (473)
Q Consensus 313 ~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~-~~~~~l~s~~~dg~ 388 (473)
........ ......+.++.+.+++..++++ .+|.|.. ....+..-.... ..-......+. .+++..+..+..|.
T Consensus 247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~ 324 (334)
T PRK13684 247 SWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGV 324 (334)
T ss_pred ccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCce
Confidence 11111111 1122457889999987766555 5665543 233222211111 11111233333 34555566666888
Q ss_pred EEEEec
Q 012007 389 ICLWRR 394 (473)
Q Consensus 389 i~iwd~ 394 (473)
|..|+-
T Consensus 325 il~~~~ 330 (334)
T PRK13684 325 LLRYVG 330 (334)
T ss_pred EEEecC
Confidence 887763
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.35 E-value=3.3 Score=39.93 Aligned_cols=97 Identities=9% Similarity=0.110 Sum_probs=62.9
Q ss_pred EEEeCCCCEEEEEcCC-CeeeEEee----cCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCc
Q 012007 251 YSGSWDKTLKVWRISD-CKCLESIN----AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHEN 325 (473)
Q Consensus 251 ~s~s~dg~v~vwd~~~-~~~~~~~~----~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 325 (473)
++|-.+..|.-.|.+- |..+.... .......+..-...|++++++..|-|++||.- .......+.+...
T Consensus 531 lvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRi------g~rAKtalP~lG~ 604 (776)
T COG5167 531 LVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRI------GKRAKTALPGLGD 604 (776)
T ss_pred EEeecccceEEecccccCCceeeeeehhccccccccccccccCceEEEecCCCceeeehhh------cchhhhcCccccc
Confidence 3444566666666653 32222211 12334455555667899999999999999963 2222344566678
Q ss_pred cEEEEEEccCCCEEEEeCCCCcEEEEecC
Q 012007 326 AVTALAVNQESAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 326 ~v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 354 (473)
+|..+....+|.++++.+. .++.+-|++
T Consensus 605 aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 605 AIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred ceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 8999999999998887765 467777764
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.35 E-value=3.8 Score=39.53 Aligned_cols=140 Identities=19% Similarity=0.185 Sum_probs=84.3
Q ss_pred CCCEEE-EEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--------EEEEEeCCCcEEEEeCcccCCCcceee
Q 012007 246 EQGLLY-SGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--------LVFTGSADGTVKVWRRELQGKGTKHCL 316 (473)
Q Consensus 246 ~~~~l~-s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--------~l~s~~~dg~i~vwd~~~~~~~~~~~~ 316 (473)
+..+|+ .|+.-..++-.|++.|+.+..+..|.+. -+.+.|.. .-+.|-.+..|.-.|.+..+. +...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN--Ki~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN--KIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCC--ceee
Confidence 344443 4555667888899999999999988775 45566642 345566666676667775442 1111
Q ss_pred eeeeccCCccEEEEEEc----cCCCEEEEeCCCCcEEEEecCCcccccceeecCcceE--EEEEecCCEEEEEeCCCcEE
Q 012007 317 AQVLLKHENAVTALAVN----QESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSADRNIC 390 (473)
Q Consensus 317 ~~~~~~~~~~v~~l~~~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~~dg~i~ 390 (473)
.. ....++.-.|+ ....++++++..|.|++||.-. ......+.+-...| ..++.+|.++++.+. ..+.
T Consensus 554 ~e----sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yll 627 (776)
T COG5167 554 VE----SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLL 627 (776)
T ss_pred ee----ehhccccccccccccccCceEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEeec-ceEE
Confidence 11 11112222222 2446899999999999999643 22223344444444 445567888877764 4677
Q ss_pred EEecC
Q 012007 391 LWRRE 395 (473)
Q Consensus 391 iwd~~ 395 (473)
+-|+.
T Consensus 628 L~d~~ 632 (776)
T COG5167 628 LTDVP 632 (776)
T ss_pred EEecc
Confidence 77765
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.75 Score=27.85 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=25.7
Q ss_pred CCeeEEEEcCCC---CEEEEEeCCCCEEEEEcCC
Q 012007 236 DAVSCLSLNAEQ---GLLYSGSWDKTLKVWRISD 266 (473)
Q Consensus 236 ~~v~~l~~~~~~---~~l~s~s~dg~v~vwd~~~ 266 (473)
++|.+++|+|+. .+|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 368899999843 5888888889999999985
|
It contains a characteristic DLL sequence motif. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=92.19 E-value=5.4 Score=37.35 Aligned_cols=106 Identities=12% Similarity=0.122 Sum_probs=55.2
Q ss_pred CeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee---eEEe----ecCCCceeEEEEcCC----CEEEEEeC-------CC
Q 012007 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC---LESI----NAHDDAINSVVAGFD----SLVFTGSA-------DG 298 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~---~~~~----~~~~~~v~~l~~~~~----~~l~s~~~-------dg 298 (473)
..+.|+|.|++.+|++ ...|.|++++ ..+.. +..+ .........++++|+ +.|+.... ..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3468999999877664 6699999999 44443 2222 123456788999985 44443333 12
Q ss_pred cEEEEeCcccCC----Ccceeeeeeecc---CCccEEEEEEccCCCEEEEeCC
Q 012007 299 TVKVWRRELQGK----GTKHCLAQVLLK---HENAVTALAVNQESAVVYCGSS 344 (473)
Q Consensus 299 ~i~vwd~~~~~~----~~~~~~~~~~~~---~~~~v~~l~~~~~~~~l~~~~~ 344 (473)
..+|........ .....+...... ....-..|+|.|+|.+.++.+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 233333322111 011222222222 2334567999999976666544
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=92.16 E-value=1 Score=39.17 Aligned_cols=64 Identities=16% Similarity=0.215 Sum_probs=47.2
Q ss_pred EcCCCCEEEEEeCCCCEEEEEcCCCeeeEEe-------e-------cCCCceeEEEEcCCCEEEEEeCCCcEEEEeCc
Q 012007 243 LNAEQGLLYSGSWDKTLKVWRISDCKCLESI-------N-------AHDDAINSVVAGFDSLVFTGSADGTVKVWRRE 306 (473)
Q Consensus 243 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~-------~-------~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~ 306 (473)
+..++.+|++.+.+|.+++||+.+++.+..- . .....|..+.+..+|..+..-.+|....|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 4457889999999999999999998765432 1 24456777788877854445556888888875
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=92.11 E-value=11 Score=35.96 Aligned_cols=194 Identities=11% Similarity=0.090 Sum_probs=83.6
Q ss_pred CCCEEEEEe-CCCCEEEEEcCC----CeeeEEeec---CC----CceeEEEEcCCC-EEEEE--eC----CCcEEEEeCc
Q 012007 246 EQGLLYSGS-WDKTLKVWRISD----CKCLESINA---HD----DAINSVVAGFDS-LVFTG--SA----DGTVKVWRRE 306 (473)
Q Consensus 246 ~~~~l~s~s-~dg~v~vwd~~~----~~~~~~~~~---~~----~~v~~l~~~~~~-~l~s~--~~----dg~i~vwd~~ 306 (473)
+.++|+..+ ..+.|+|.|+.+ .+..+.+.. +. ..-..+...|++ .++++ .. -|.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777776 678899999873 344444432 11 122233344666 55543 22 2346666654
Q ss_pred ccCCCcceeeeeeec---cCCccEEEEEEccCCCEEEEeCC--------------------CCcEEEEecCCccccccee
Q 012007 307 LQGKGTKHCLAQVLL---KHENAVTALAVNQESAVVYCGSS--------------------DGLVNFWECEKHLSHGGVL 363 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~~~~~--------------------dg~i~iwd~~~~~~~~~~~ 363 (473)
+.+ ...... ....--..+-|.|..+.+++... ...+.+||+.+.+..+.+-
T Consensus 166 tf~------v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~id 239 (461)
T PF05694_consen 166 TFE------VKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTID 239 (461)
T ss_dssp T--------EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEE
T ss_pred ccc------ccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEe
Confidence 211 111111 11223456778888788777542 3579999999865554444
Q ss_pred ecCcc-eEEEEEe--c--CCE-EEEEeCCCcEEEEecCCCCceeEEEE--ecC-----C------------CCceeEEEE
Q 012007 364 RGHKM-AVLCLAA--A--GNL-VFSGSADRNICLWRREESGAHSCLAV--LTG-----H------------TGPVKCLAV 418 (473)
Q Consensus 364 ~~~~~-~v~~~~~--~--~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~-----h------------~~~V~~l~~ 418 (473)
.+... ..+.+.+ + ..+ ++.+.-..+|..|-....+.+....+ +.. - ..-|+.|.+
T Consensus 240 Lg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i 319 (461)
T PF05694_consen 240 LGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI 319 (461)
T ss_dssp S-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred cCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence 44332 2333332 3 233 33333444555554432233332222 111 0 245799999
Q ss_pred ecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 419 EEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
+.|.+. +.+++=.+|.|+.|||+....
T Consensus 320 SlDDrf------------LYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 320 SLDDRF------------LYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp -TTS-E------------EEEEETTTTEEEEEE-SSTTS
T ss_pred ccCCCE------------EEEEcccCCcEEEEecCCCCC
Confidence 999882 455555799999999998654
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=92.00 E-value=5.1 Score=39.48 Aligned_cols=150 Identities=12% Similarity=0.129 Sum_probs=84.0
Q ss_pred CceeEEEEcCCCE-EEEEe--CCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC----CCEEEEeCCCCcEEE
Q 012007 278 DAINSVVAGFDSL-VFTGS--ADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE----SAVVYCGSSDGLVNF 350 (473)
Q Consensus 278 ~~v~~l~~~~~~~-l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~----~~~l~~~~~dg~i~i 350 (473)
.++..++|..... +++.- .+|.+++=|.. ..+.-.-|..+.|.|- ...|++......|.+
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds~-------------viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtV 86 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDSK-------------VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTV 86 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCcc-------------EeeccceeeeeeecCcccCCCCceEEEeccceEEE
Confidence 4778888876553 33321 34444443322 2344456899999984 334555556788999
Q ss_pred EecCCc-ccccceeecC------cceE----EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEe
Q 012007 351 WECEKH-LSHGGVLRGH------KMAV----LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVE 419 (473)
Q Consensus 351 wd~~~~-~~~~~~~~~~------~~~v----~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~ 419 (473)
|-+.-. ....+.+... ..++ +-|.|....|++-.....-.++++.... ......+ .-.+.|.|.+|.
T Consensus 87 WqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~-srVkaDi-~~~G~IhCACWT 164 (671)
T PF15390_consen 87 WQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDS-SRVKADI-KTSGLIHCACWT 164 (671)
T ss_pred EEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCC-ceEEEec-cCCceEEEEEec
Confidence 987521 1111111111 1111 2345556677776666555667766532 2333334 346789999999
Q ss_pred cCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 420 EDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
.||++ ++++.|..=.-+|||=..
T Consensus 165 ~DG~R------------LVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 165 KDGQR------------LVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CcCCE------------EEEEeCCeEEEEEecCch
Confidence 99984 444444445577888543
|
|
| >KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.89 E-value=21 Score=38.54 Aligned_cols=152 Identities=15% Similarity=0.192 Sum_probs=91.3
Q ss_pred EEEEEeC---------CCcEEEEeCcc----cCCC-cceeee-eeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC
Q 012007 290 LVFTGSA---------DGTVKVWRREL----QGKG-TKHCLA-QVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 290 ~l~s~~~---------dg~i~vwd~~~----~~~~-~~~~~~-~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 354 (473)
+|++|.. -|.+.++|+-. .++. +...+. ......++.|..++-- +|.++. + ...+|.+|+++
T Consensus 1048 ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV-~G~l~~-~-~GqKI~v~~l~ 1124 (1366)
T KOG1896|consen 1048 YLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV-RGHLLS-S-QGQKIIVRKLD 1124 (1366)
T ss_pred eEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe-ccEEEE-c-cCcEEEEEEec
Confidence 6777643 58899999743 1211 111111 2233456677766543 455443 3 34589999994
Q ss_pred Ccccc-cceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEec--CCCCceeEEEEecCCCCCcccccC
Q 012007 355 KHLSH-GGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLT--GHTGPVKCLAVEEDRDHDHEYHQK 431 (473)
Q Consensus 355 ~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~~~~~~~ 431 (473)
....+ ..-+..-...+.++..-+++|+.|.--..|.+...... ...+..+. ...-.+.++.|--++..
T Consensus 1125 r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqee--p~rlsL~srd~~~l~v~s~EFLVdg~~------- 1195 (1366)
T KOG1896|consen 1125 RDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEE--PYRLSLLSRDFEPLNVYSTEFLVDGSN------- 1195 (1366)
T ss_pred cCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccC--ceEEEEeecCCchhhceeeeeEEcCCe-------
Confidence 43322 22233333444555555889999988888888777652 12222222 22336888999988874
Q ss_pred CCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 432 GDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 432 ~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
..++.+..|+.|+++-.....+
T Consensus 1196 ----L~flvsDa~rNi~vy~Y~Pe~~ 1217 (1366)
T KOG1896|consen 1196 ----LSFLVSDADRNIHVYMYAPENI 1217 (1366)
T ss_pred ----eEEEEEcCCCcEEEEEeCCCCc
Confidence 3789999999999998876543
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=91.30 E-value=8.2 Score=36.80 Aligned_cols=136 Identities=15% Similarity=0.133 Sum_probs=65.8
Q ss_pred ceeEEEEcCCCEEEEEeC------------CC-cEEEEeCccc-CCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC
Q 012007 279 AINSVVAGFDSLVFTGSA------------DG-TVKVWRRELQ-GKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS 344 (473)
Q Consensus 279 ~v~~l~~~~~~~l~s~~~------------dg-~i~vwd~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~ 344 (473)
....|++.+++.|+++.. .+ .|.+++-..+ ++.. ....+.......+.|++.+++ |+++..
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d---~~~vfa~~l~~p~Gi~~~~~G--lyV~~~ 89 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD---KSNVFAEELSMVTGLAVAVGG--VYVATP 89 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc---eeEEeecCCCCccceeEecCC--EEEeCC
Confidence 455677777775555532 22 5666643221 1111 112222223456889999888 444555
Q ss_pred CCcEEEEecCCcc-------cccceee------cCcceEEEEEecCCEEEEEeCC-------------------CcEEEE
Q 012007 345 DGLVNFWECEKHL-------SHGGVLR------GHKMAVLCLAAAGNLVFSGSAD-------------------RNICLW 392 (473)
Q Consensus 345 dg~i~iwd~~~~~-------~~~~~~~------~~~~~v~~~~~~~~~l~s~~~d-------------------g~i~iw 392 (473)
....++.|..... .+...+. .|...-..+.++|.+.++-+.. |.|.-+
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 4434444553211 1111111 1333346667788766654421 334444
Q ss_pred ecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 393 RREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 393 d~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
+..+. .....-.++ .....++|++++.
T Consensus 170 ~pdg~---~~e~~a~G~-rnp~Gl~~d~~G~ 196 (367)
T TIGR02604 170 NPDGG---KLRVVAHGF-QNPYGHSVDSWGD 196 (367)
T ss_pred ecCCC---eEEEEecCc-CCCccceECCCCC
Confidence 44441 111112233 3457899999887
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.28 E-value=1.7 Score=46.73 Aligned_cols=167 Identities=14% Similarity=0.232 Sum_probs=89.9
Q ss_pred eCCCCEEEEEcCCCeeeEEeecCCCceeEEEE-cCC--------CEEEEEeCCCcEEEEeCcccCCCccee---eeeeec
Q 012007 254 SWDKTLKVWRISDCKCLESINAHDDAINSVVA-GFD--------SLVFTGSADGTVKVWRRELQGKGTKHC---LAQVLL 321 (473)
Q Consensus 254 s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~-~~~--------~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~~ 321 (473)
+-|+.+.+|+.+++.....+.+-...|..+.. -|. .+++..+.--.|.++-+.......... ....+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 34789999999998888888777777766643 221 144444455566666544322111110 011222
Q ss_pred cCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCcee
Q 012007 322 KHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHS 401 (473)
Q Consensus 322 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 401 (473)
.....|.++....+|+.+++| .|| .+|.+.-...- -..+......|++-. .-..+.= .
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~--gWf~~rc~Kiclt~s--------~ls~lvP---------s 233 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAED--GWFGSRCRKICLTKS--------VLSSLVP---------S 233 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccC--chhhcccccccCchh--------HHHHhhh---------h
Confidence 335668888877788877665 455 45543211000 000000111111100 0000000 0
Q ss_pred EEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 402 CLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 402 ~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
.+.....+..+|..|++..... ++++-+..|+|.+|++...
T Consensus 234 ~~~~~~~~~dpI~qi~ID~SR~-------------IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 234 LLSVPGSSKDPIRQITIDNSRN-------------ILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred hhcCCCCCCCcceeeEeccccc-------------eeeeeccCceEEEEEccCC
Confidence 1111135677899999988877 8999999999999999873
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=91.19 E-value=17 Score=36.05 Aligned_cols=152 Identities=11% Similarity=0.064 Sum_probs=70.6
Q ss_pred CCCEEEEEeCC-----CCEEEEEcCCCeeeEEeec----CCCceeEEEEcCCCEEEEEeCCC-----cEEEEeCcccCCC
Q 012007 246 EQGLLYSGSWD-----KTLKVWRISDCKCLESINA----HDDAINSVVAGFDSLVFTGSADG-----TVKVWRRELQGKG 311 (473)
Q Consensus 246 ~~~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~----~~~~v~~l~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~ 311 (473)
++.+.+.|+.+ ..+.++|+.+.+-...-.. ....-.+++...+.+++.|+.++ .+..||+...
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~--- 304 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDK--- 304 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCC---
Confidence 34555666644 3588888877543221110 11111222333344555666543 3566776532
Q ss_pred cceeeeee---eccCCccEEEEEEccCCCEEEEeCCC----CcEEEEecCCcccccc-ee---ecCcceEEEEEecCCEE
Q 012007 312 TKHCLAQV---LLKHENAVTALAVNQESAVVYCGSSD----GLVNFWECEKHLSHGG-VL---RGHKMAVLCLAAAGNLV 380 (473)
Q Consensus 312 ~~~~~~~~---~~~~~~~v~~l~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~-~~---~~~~~~v~~~~~~~~~l 380 (473)
.+..... ........ .++. -++++++.++.+ ..+.+||+.+..-... .. ........+...+++++
T Consensus 305 -~W~~~~~~~~~~~~R~~~-~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iy 381 (470)
T PLN02193 305 -KWFHCSTPGDSFSIRGGA-GLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIV 381 (470)
T ss_pred -EEEeCCCCCCCCCCCCCc-EEEE-ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEE
Confidence 1111111 00111111 1222 256677777655 4588899875322110 00 11112223445567788
Q ss_pred EEEeCC--------------CcEEEEecCCCCceeEEE
Q 012007 381 FSGSAD--------------RNICLWRREESGAHSCLA 404 (473)
Q Consensus 381 ~s~~~d--------------g~i~iwd~~~~~~~~~~~ 404 (473)
+.|+.+ +.+.+||+.+ ..+..+.
T Consensus 382 v~GG~~~~~~~~~~~~~~~~ndv~~~D~~t-~~W~~~~ 418 (470)
T PLN02193 382 IFGGEIAMDPLAHVGPGQLTDGTFALDTET-LQWERLD 418 (470)
T ss_pred EECCccCCccccccCccceeccEEEEEcCc-CEEEEcc
Confidence 888753 2477888876 3344443
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.11 E-value=3.2 Score=39.35 Aligned_cols=171 Identities=11% Similarity=0.082 Sum_probs=93.9
Q ss_pred eEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeecc-CCccEE-EEEEccCCCEEEEeCCCCc
Q 012007 270 LESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLK-HENAVT-ALAVNQESAVVYCGSSDGL 347 (473)
Q Consensus 270 ~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~v~-~l~~~~~~~~l~~~~~dg~ 347 (473)
+..+......|..+...|++..+-.-...++.++++........ .+.....+ ....|+ .+..-..|.-+++++.||.
T Consensus 213 i~~L~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~r-kl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~ 291 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIR-KLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGL 291 (733)
T ss_pred hhhcCCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchh-hhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCc
Confidence 34455556677888889998322222237788888763221111 11111011 001122 1222335666888999999
Q ss_pred EEEE-ecCCcccc----cceeecCcceEEEEEec--CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEec
Q 012007 348 VNFW-ECEKHLSH----GGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEE 420 (473)
Q Consensus 348 i~iw-d~~~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~ 420 (473)
|.-| |.++.... ...++-....+..+.++ .+-+++-+..|++.++.... .+.+-.-. --..+.-++++|
T Consensus 292 vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~---~~~lL~~~-~~~~~~~~~~Sp 367 (733)
T COG4590 292 VSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTS---EKLLLFER-AYQAPQLVAMSP 367 (733)
T ss_pred eeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeeccc---Ccceehhh-hhcCcceeeeCc
Confidence 9877 55543221 11111122334444444 45677778888888876554 22222111 123567789999
Q ss_pred CCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCc
Q 012007 421 DRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDL 459 (473)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~ 459 (473)
.+. ++++- ..|.++++.+++..+.+
T Consensus 368 ~~~-------------~Ll~e-~~gki~~~~l~Nr~Pei 392 (733)
T COG4590 368 NQA-------------YLLSE-DQGKIRLAQLENRNPEI 392 (733)
T ss_pred ccc-------------hheee-cCCceEEEEecCCCCCc
Confidence 987 56655 45679999998877654
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.90 E-value=4.3 Score=43.80 Aligned_cols=79 Identities=16% Similarity=0.325 Sum_probs=55.7
Q ss_pred cCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCC-------Cccee------------eeeeeccCCccEEEEEEccC
Q 012007 275 AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGK-------GTKHC------------LAQVLLKHENAVTALAVNQE 335 (473)
Q Consensus 275 ~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~-------~~~~~------------~~~~~~~~~~~v~~l~~~~~ 335 (473)
...-.|+|+....+|.++.++.|| .+|.+--... ..+.+ +......+..+|..|++...
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 345678899988888888888888 5555421110 00111 11112356789999999999
Q ss_pred CCEEEEeCCCCcEEEEecCC
Q 012007 336 SAVVYCGSSDGLVNFWECEK 355 (473)
Q Consensus 336 ~~~l~~~~~dg~i~iwd~~~ 355 (473)
...+++-+..|+|.+||+..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 99999999999999999865
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.73 E-value=4.9 Score=43.50 Aligned_cols=71 Identities=14% Similarity=0.204 Sum_probs=43.9
Q ss_pred cCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCC
Q 012007 322 KHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREES 397 (473)
Q Consensus 322 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~ 397 (473)
-+..++.+..+......+ .+...+.+.+|+.............+... ..++..++++..||.+.+||...+
T Consensus 196 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 196 LIEYESLQVLYYSPTKIL-IGFNRGLVVIKDRASKYVQSAYLPNGQLE----SRDGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred ccccccceeeeecCCCcc-eeeeeeeeeehhcccccchhhcccccccC----ccCCceEEEEEecCCEEeeecCCC
Confidence 345556666555444433 34455677777765433322222222211 778999999999999999999874
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=90.60 E-value=8.2 Score=37.63 Aligned_cols=31 Identities=26% Similarity=0.494 Sum_probs=25.1
Q ss_pred ceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 412 PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 412 ~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
.|.+++..+..+ ++++...+|.|.+|++..+
T Consensus 191 ~I~~v~~d~~r~-------------~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 191 KIVQVAVDPSRR-------------LLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp -EEEEEEETTTT-------------EEEEEESSE-EEEEEE-SS
T ss_pred ceeeEEecCCcC-------------EEEEEeCCCcEEEEEEeCC
Confidence 488999988876 8999999999999999863
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.25 E-value=13 Score=33.34 Aligned_cols=273 Identities=14% Similarity=0.117 Sum_probs=148.4
Q ss_pred cccEEEEEecCCEEEEeeCCCcEEEeeCCcccc----ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeE
Q 012007 123 EGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFS----GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVH 198 (473)
Q Consensus 123 ~~~V~~~~~~g~~l~tg~~dg~i~vwd~~~~~~----~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 198 (473)
.+-+..+.+.+++.+.+..+.-++|.|....-. .+..-.+--.++.. .|++...+..|.-+.+.|+.+......
T Consensus 86 ~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~l 163 (370)
T COG5276 86 RDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQL 163 (370)
T ss_pred hhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCcee
Confidence 344566778899999999988999999653321 12212244455555 466888888666677889887654322
Q ss_pred EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee---eEEeec
Q 012007 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC---LESINA 275 (473)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~---~~~~~~ 275 (473)
...... .......++. .|++-+.+.+|+-+.+-|+.+... +....
T Consensus 164 agrya~-----------------------------~~~d~~~v~I--SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n- 211 (370)
T COG5276 164 AGRYAL-----------------------------PGGDTHDVAI--SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN- 211 (370)
T ss_pred eeeecc-----------------------------CCCCceeEEE--ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-
Confidence 221111 1111234444 468888889999999999976432 22222
Q ss_pred CCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCc--cEEEEEEccCCCEEEEeCCCCcEEEEec
Q 012007 276 HDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHEN--AVTALAVNQESAVVYCGSSDGLVNFWEC 353 (473)
Q Consensus 276 ~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~v~~l~~~~~~~~l~~~~~dg~i~iwd~ 353 (473)
....+.++..+++.-+++... --+.+-|...... .. ..-...... .++.+.. .+++.+....+.-+.+-|+
T Consensus 212 ~g~g~~sv~vsdnr~y~vvy~-egvlivd~s~~ss--p~--~~gsyet~~p~~~s~v~V--s~~~~Yvadga~gl~~idi 284 (370)
T COG5276 212 TGPGTYSVSVSDNRAYLVVYD-EGVLIVDVSGPSS--PT--VFGSYETSNPVSISTVPV--SGEYAYVADGAKGLPIIDI 284 (370)
T ss_pred cCCceEEEEecCCeeEEEEcc-cceEEEecCCCCC--ce--EeeccccCCcccccceec--ccceeeeeccccCceeEec
Confidence 223677777776654444333 3345555542111 11 111111111 2222333 4566666666777777777
Q ss_pred CCcccc--cceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccC
Q 012007 354 EKHLSH--GGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQK 431 (473)
Q Consensus 354 ~~~~~~--~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~ 431 (473)
.+.... ...+.........+...+.++..+..+ +..+-+.... +......+....+.+.+.+-+.+
T Consensus 285 snp~spfl~ss~~t~g~~a~gi~ay~~y~yiadkn-~g~vV~~s~~---s~m~~~~g~~ti~~s~~v~~~~q-------- 352 (370)
T COG5276 285 SNPPSPFLSSSLDTAGYQAAGIRAYGNYNYIADKN-TGAVVDASPP---SMMDKRPGRPTIGQSCDVSVDTQ-------- 352 (370)
T ss_pred cCCCCCchhccccCCCccccceEEecCeeEeccCC-ceEEEeCCCh---hhcccccCcceEeeecceEEEee--------
Confidence 653322 111111112334455556777766655 4555555441 11222222222334444444444
Q ss_pred CCccEEEEEeeCCCcEEEEEcC
Q 012007 432 GDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 432 ~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
.+.+...++.+.||+..
T Consensus 353 -----~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 353 -----IIYSTDYNGGLSIIEYL 369 (370)
T ss_pred -----EEEEeecCCCEEEEEec
Confidence 68888899999999863
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=90.09 E-value=18 Score=34.59 Aligned_cols=16 Identities=6% Similarity=0.262 Sum_probs=10.7
Q ss_pred EEEEecCCEEEEEeCC
Q 012007 371 LCLAAAGNLVFSGSAD 386 (473)
Q Consensus 371 ~~~~~~~~~l~s~~~d 386 (473)
.++..++.+++.|+..
T Consensus 338 ~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 338 VSVSWNNGVLLIGGET 353 (376)
T ss_pred EEEEeCCEEEEEcCCC
Confidence 3556677777777754
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=90.00 E-value=11 Score=32.19 Aligned_cols=144 Identities=10% Similarity=0.126 Sum_probs=79.2
Q ss_pred CEEEEEeCCCCEEEEEcC--CCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCC------cEEEE-eCccc--CCC----
Q 012007 248 GLLYSGSWDKTLKVWRIS--DCKCLESINAHDDAINSVVAGFDS-LVFTGSADG------TVKVW-RRELQ--GKG---- 311 (473)
Q Consensus 248 ~~l~s~s~dg~v~vwd~~--~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg------~i~vw-d~~~~--~~~---- 311 (473)
+.|+.+.....|.+|++. ..+.+..+.. -+.|..+.++..| ++++--.+. .+|+| +.+.. +..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455555666889999987 3455666664 3788899988777 777764432 45554 22211 000
Q ss_pred --------------cceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccc---ce--e------ecC
Q 012007 312 --------------TKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHG---GV--L------RGH 366 (473)
Q Consensus 312 --------------~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~--~------~~~ 366 (473)
....+.....+-...+.+++..|-..-|+.|+ ++.+.+|.+....... .. + ..-
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 00001111122345667788777433344554 4578888875432200 00 0 111
Q ss_pred cceEEEEEecCCEEEEEeCCCcEEEEec
Q 012007 367 KMAVLCLAAAGNLVFSGSADRNICLWRR 394 (473)
Q Consensus 367 ~~~v~~~~~~~~~l~s~~~dg~i~iwd~ 394 (473)
......++..+.|+|..+. -.++++.+
T Consensus 187 ~~~p~~v~ic~~yiA~~s~-~ev~Vlkl 213 (215)
T PF14761_consen 187 NFKPTQVAICEGYIAVMSD-LEVLVLKL 213 (215)
T ss_pred CceEEEEEEEeeEEEEecC-CEEEEEEE
Confidence 2234556677889888874 46777655
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.90 E-value=7.5 Score=37.73 Aligned_cols=92 Identities=11% Similarity=0.033 Sum_probs=50.8
Q ss_pred CeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceee
Q 012007 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCL 316 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 316 (473)
.|..+..++.|..++-.+.+|.+.++=.+....-..++..+..|+|-.+.-+..+++.+. .
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~--~----------------- 165 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSST--S----------------- 165 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCC--c-----------------
Confidence 467788899999999888888666553332222233333334455544443333333221 1
Q ss_pred eeeeccCCccEEEEEEccCC---CEEEEeCCCCcEEEEecCC
Q 012007 317 AQVLLKHENAVTALAVNQES---AVVYCGSSDGLVNFWECEK 355 (473)
Q Consensus 317 ~~~~~~~~~~v~~l~~~~~~---~~l~~~~~dg~i~iwd~~~ 355 (473)
-.+..++|+|+. ..|..-+.|..|++||+..
T Consensus 166 --------ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 166 --------LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSE 199 (741)
T ss_pred --------eeeeeccccCCccCCceEEEEecCcEEEEEecCC
Confidence 123345566643 4455556667777777654
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=89.86 E-value=18 Score=34.22 Aligned_cols=212 Identities=11% Similarity=0.087 Sum_probs=88.6
Q ss_pred EEeCCCCEEEEEe-CCC--eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEc
Q 012007 168 IISGDSNKIFTGH-QDG--KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLN 244 (473)
Q Consensus 168 ~~s~~~~~l~s~~-~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 244 (473)
+|.+||+.|+-++ .|| .+.+.|+.+++..+..... . .......++
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~-------------------------------g-~~~~g~~~s 89 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGP-------------------------------G-DNTFGGFLS 89 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS---------------------------------B-TTT-EE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCC-------------------------------C-CCccceEEe
Confidence 5678886655544 454 5667778777654333211 1 111134456
Q ss_pred CCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEE--cCCCEEEEEeC----C-------------------Cc
Q 012007 245 AEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVA--GFDSLVFTGSA----D-------------------GT 299 (473)
Q Consensus 245 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~--~~~~~l~s~~~----d-------------------g~ 299 (473)
++.+.++-...+..|+-.|+.+.+....+......+-...| ..++..++|.. | ..
T Consensus 90 ~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~ 169 (386)
T PF14583_consen 90 PDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCR 169 (386)
T ss_dssp TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EE
T ss_pred cCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCce
Confidence 77777655555568888999888765555555555543443 33343333221 0 11
Q ss_pred EEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC----c-EEEEecCCcccccceeecCc-ceE---
Q 012007 300 VKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG----L-VNFWECEKHLSHGGVLRGHK-MAV--- 370 (473)
Q Consensus 300 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg----~-i~iwd~~~~~~~~~~~~~~~-~~v--- 370 (473)
|...|+.+++ ...+......+..+.|+|...-++.=|.+| . -+||-+++.......+..+. ..+
T Consensus 170 i~~idl~tG~-------~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gH 242 (386)
T PF14583_consen 170 IFTIDLKTGE-------RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGH 242 (386)
T ss_dssp EEEEETTT---------EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEE
T ss_pred EEEEECCCCc-------eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccc
Confidence 2222332111 122333445667788999654444433222 1 36675543221111211121 111
Q ss_pred EEEEecCCEEEE-----EeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 371 LCLAAAGNLVFS-----GSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 371 ~~~~~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
--+.++|..|.- ++.+..|.-+|..+++. ..+... .....+-.++|+.
T Consensus 243 Efw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-~~~~~~----p~~~H~~ss~Dg~ 295 (386)
T PF14583_consen 243 EFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-RRLMEM----PWCSHFMSSPDGK 295 (386)
T ss_dssp EEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-EEEEEE-----SEEEEEE-TTSS
T ss_pred ccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-eEEEeC----CceeeeEEcCCCC
Confidence 235667765443 22344566777777432 222222 2344566667766
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=89.78 E-value=14 Score=32.90 Aligned_cols=156 Identities=7% Similarity=-0.047 Sum_probs=84.5
Q ss_pred ccEEEEEEeCCCCEEEEEeCCC--eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 162 GLVKAIIISGDSNKIFTGHQDG--KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
.-...+.|..+|.++-+.+.-| .|+.+|+.+++......+...- --.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~-------------------------------FgE 93 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY-------------------------------FGE 93 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---------------------------------EE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc-------------------------------cce
Confidence 4466788877887888888776 6999999998876555543211 011
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeee
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQV 319 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 319 (473)
.++... +++..-.-.++...+||..+.+.+.++.- ...=+.++.. +..|+.......|.++|...... ... +.
T Consensus 94 Git~~~-d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~d-g~~Li~SDGS~~L~~~dP~~f~~--~~~-i~- 166 (264)
T PF05096_consen 94 GITILG-DKLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTSD-GKRLIMSDGSSRLYFLDPETFKE--VRT-IQ- 166 (264)
T ss_dssp EEEEET-TEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEEC-SSCEEEE-SSSEEEEE-TTT-SE--EEE-EE-
T ss_pred eEEEEC-CEEEEEEecCCeEEEEccccceEEEEEec-CCcceEEEcC-CCEEEEECCccceEEECCcccce--EEE-EE-
Confidence 222221 22222333568899999999999988864 3455777743 33566666677899998764322 111 11
Q ss_pred eccCC---ccEEEEEEccCCCEEEEeCCCCcEEEEecCCc
Q 012007 320 LLKHE---NAVTALAVNQESAVVYCGSSDGLVNFWECEKH 356 (473)
Q Consensus 320 ~~~~~---~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~ 356 (473)
..... ..++.+.|. +|...|=.-....|...|..++
T Consensus 167 V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG 205 (264)
T PF05096_consen 167 VTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETG 205 (264)
T ss_dssp -EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-
T ss_pred EEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCC
Confidence 11112 234445554 4444443444445555555554
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=88.97 E-value=27 Score=35.01 Aligned_cols=249 Identities=10% Similarity=0.114 Sum_probs=110.6
Q ss_pred CCEEEEeeCCCcEEEeeCCccc----cccccC-cccEEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCeeeEEeeccccc
Q 012007 133 GDLLYTGSDSKNIRVWKNLKEF----SGFKSN-SGLVKAIIISGDS-NKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPT 206 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~~~~----~~~~~h-~~~V~~l~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 206 (473)
+..++.+..+|.+..-.+...- ....+. .....++.+..+| .+|+.|+.-|.=.++.+...........
T Consensus 222 ~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~----- 296 (504)
T PF10433_consen 222 GDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSL----- 296 (504)
T ss_dssp SSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-----
T ss_pred CCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEec-----
Confidence 6688888899988877543211 111222 4455677776555 4777777755444444432222222111
Q ss_pred cceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC----CC------EEEEEe---CCCCEEEEEcCCCeeeE--
Q 012007 207 FKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE----QG------LLYSGS---WDKTLKVWRISDCKCLE-- 271 (473)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~----~~------~l~s~s---~dg~v~vwd~~~~~~~~-- 271 (473)
..-++|..+++.+. .. .|++++ .+|.+++..- |-...
T Consensus 297 --------------------------~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~--Gi~~~~~ 348 (504)
T PF10433_consen 297 --------------------------PNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN--GIGIEGL 348 (504)
T ss_dssp ------------------------------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE--SBEEE--
T ss_pred --------------------------cCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec--cCCceee
Confidence 14456777766431 11 555554 5677888753 22222
Q ss_pred E--eecC--CCceeEEEEcC--CCEEEEEeCCCcEEEEeCcccCCCcceeeee--eeccCCccEEEEEEccCCCEEEEeC
Q 012007 272 S--INAH--DDAINSVVAGF--DSLVFTGSADGTVKVWRRELQGKGTKHCLAQ--VLLKHENAVTALAVNQESAVVYCGS 343 (473)
Q Consensus 272 ~--~~~~--~~~v~~l~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~~~~ 343 (473)
. ...- -..++.+.... +.+++....+ .-+++.+...+......... .+......+.+-.+. +..++=.+
T Consensus 349 ~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt 425 (504)
T PF10433_consen 349 ELASSELPGVTGIWTLKLSSSDHSYLVLSFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVT 425 (504)
T ss_dssp EEEEEEESTEEEEEEE-SSSSSBSEEEEEESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEE
T ss_pred eeeccCCCCceEEEEeeecCCCceEEEEEcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEe
Confidence 1 1111 23344444333 2355555444 44455553100000000000 111112223222222 33333333
Q ss_pred CCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEec----CCCCceeEEEEe
Q 012007 344 SDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLT----GHTGPVKCLAVE 419 (473)
Q Consensus 344 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~h~~~V~~l~~~ 419 (473)
. ..|++.+.................|.+.+.++.+++.+-.++.+.++.+..... ...... .....|.|+...
T Consensus 426 ~-~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~~~~v~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~eis~l~i~ 502 (504)
T PF10433_consen 426 P-KGIRLIDLEDGKLTQEWKPPAGSIIVAASINDPQVLVALSGGELVYFELDDNKI--SVSDNDETILELDNEISCLSIE 502 (504)
T ss_dssp S-SEEEEEESSSTSEEEEEE-TTS---SEEEESSSEEEEEE-TTEEEEEEEETTEE--EEEEE----EE-SS-EEEEE--
T ss_pred c-CeEEEEECCCCeEEEEEeCCCCCeEEEEEECCCEEEEEEeCCcEEEEEEECCce--eeeeeccccccCCCceEEEEeC
Confidence 3 347777765543333333345566777788888888888899999999887321 111111 145678888877
Q ss_pred c
Q 012007 420 E 420 (473)
Q Consensus 420 ~ 420 (473)
|
T Consensus 503 p 503 (504)
T PF10433_consen 503 P 503 (504)
T ss_dssp -
T ss_pred C
Confidence 6
|
... |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=88.90 E-value=16 Score=32.48 Aligned_cols=199 Identities=7% Similarity=0.000 Sum_probs=0.0
Q ss_pred eEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeee
Q 012007 239 SCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQ 318 (473)
Q Consensus 239 ~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 318 (473)
..++-.+||..-+++...+.|--.|..+|+....--+....-..|...|++-...+.....|.-.|.++. .......
T Consensus 65 ~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~---evt~f~l 141 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTL---EVTRFPL 141 (353)
T ss_pred cccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCccc---ceEEeec
Q ss_pred eeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCC
Q 012007 319 VLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESG 398 (473)
Q Consensus 319 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 398 (473)
....-........|.+.|++-+++...-.=++=-.+..........+..-.-+|..++|..-++.-.++.|-..|... .
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~-~ 220 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFA-G 220 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccccc-C
Q ss_pred ceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 399 AHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 399 ~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
..+.+..-.+....-..+--+|.+. +-+|....+.+..+|-..
T Consensus 221 ~aev~p~P~~~~~gsRriwsdpig~-------------~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 221 HAEVVPQPNALKAGSRRIWSDPIGR-------------AWITTWGTGSLHRFDPSV 263 (353)
T ss_pred CcceecCCCcccccccccccCccCc-------------EEEeccCCceeeEeCccc
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.09 E-value=2.8 Score=39.69 Aligned_cols=160 Identities=13% Similarity=0.081 Sum_probs=94.4
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee-EEee-cCCC----cee-EEEEcCCC-EEEEEeCCCcEEEE-e
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL-ESIN-AHDD----AIN-SVVAGFDS-LVFTGSADGTVKVW-R 304 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~-~~~~-~~~~----~v~-~l~~~~~~-~l~s~~~dg~i~vw-d 304 (473)
-...|..+-..|||+.|+.-+. .++.++++.+.... +++- ...+ .|+ .+.....+ .++++..||.|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence 3456778889999999988775 68889988654321 1111 1011 121 11112233 67788889988877 5
Q ss_pred CcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEe
Q 012007 305 RELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGS 384 (473)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~ 384 (473)
.+.++. ........+.-....+..+.-..+.+-+++-+.+|++.++..................+..+++.+.+|++-.
T Consensus 298 vr~~~~-p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e~ 376 (733)
T COG4590 298 VRRDGQ-PHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSED 376 (733)
T ss_pred eecCCC-CcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchheeec
Confidence 553332 2222222222223344444444455677888888988887654433332222233556788999999888765
Q ss_pred CCCcEEEEecCC
Q 012007 385 ADRNICLWRREE 396 (473)
Q Consensus 385 ~dg~i~iwd~~~ 396 (473)
.|.|+++.+++
T Consensus 377 -~gki~~~~l~N 387 (733)
T COG4590 377 -QGKIRLAQLEN 387 (733)
T ss_pred -CCceEEEEecC
Confidence 56799998887
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=87.94 E-value=25 Score=33.48 Aligned_cols=62 Identities=24% Similarity=0.283 Sum_probs=41.3
Q ss_pred CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCC-CceeEEEEcCCCEEEEEeCCCcEEEEeCccc
Q 012007 246 EQGLLYSGSWDKTLKVWRISDCKCLESINAHD-DAINSVVAGFDSLVFTGSADGTVKVWRRELQ 308 (473)
Q Consensus 246 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~-~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~ 308 (473)
+|+ ++.++.++.++.+|..+|+.+....... ..+..-....++.++.++.++.+...|..++
T Consensus 111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG 173 (370)
T COG1520 111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTG 173 (370)
T ss_pred CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCC
Confidence 554 8888889999999998999988877655 1122222233456666666777777766533
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=87.74 E-value=17 Score=31.21 Aligned_cols=127 Identities=14% Similarity=0.282 Sum_probs=69.5
Q ss_pred EEecC-CEEEEeeCCCcEEEeeCCcc----ccccccCcccEEEEEEeCCCCEEEEEeCC---C---eEEEE---eCCC-C
Q 012007 129 LAASG-DLLYTGSDSKNIRVWKNLKE----FSGFKSNSGLVKAIIISGDSNKIFTGHQD---G---KIRIW---KVSR-K 193 (473)
Q Consensus 129 ~~~~g-~~l~tg~~dg~i~vwd~~~~----~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g---~i~vw---d~~~-~ 193 (473)
+...| +.|+.+.....|.+|++... +..|. --+.|..+.++..|+||+|--.+ . .+|+| +... .
T Consensus 23 ~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~ 101 (215)
T PF14761_consen 23 VCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE 101 (215)
T ss_pred eeccCCceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhccc
Confidence 33345 55555455678999997622 22232 23789999999999999996443 2 55664 3321 1
Q ss_pred -CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 012007 194 -NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (473)
Q Consensus 194 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~ 267 (473)
........+. +.. +...-........+.+.-...+.|++..|-..-|+.|+ ++.+.+|.+...
T Consensus 102 ~~~v~vRiaG~-~v~---------~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 102 NSPVRVRIAGH-RVT---------PSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred CCcEEEEEccc-ccc---------cCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence 1111111110 000 00000001123344444667888999988544455665 468999987543
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.73 E-value=31 Score=34.21 Aligned_cols=147 Identities=15% Similarity=0.209 Sum_probs=77.4
Q ss_pred cccEEEEEec-CCEEEEeeCCCcEEEeeCCc--ccccccc-CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeE
Q 012007 123 EGHIYSLAAS-GDLLYTGSDSKNIRVWKNLK--EFSGFKS-NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVH 198 (473)
Q Consensus 123 ~~~V~~~~~~-g~~l~tg~~dg~i~vwd~~~--~~~~~~~-h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 198 (473)
...|.++.+| ...+..|+.||-. .||..+ .+..-.. ...+|..+..+-.| .|..|+.+| |.+.+.+.......
T Consensus 164 d~~V~aLv~D~~g~lWvgT~dGL~-~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn~ 240 (671)
T COG3292 164 DTPVVALVFDANGRLWVGTPDGLS-YFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASNW 240 (671)
T ss_pred CccceeeeeeccCcEEEecCCcce-EEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhcccccc
Confidence 4557777777 4477888888754 455332 1221112 22566666666566 567777776 66666655221110
Q ss_pred EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee-eEEeecC-
Q 012007 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC-LESINAH- 276 (473)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~-~~~~~~~- 276 (473)
... + ....|..+.-..+| .+..|+..|-.+. ....... +...+.|
T Consensus 241 ~~~--l-----------------------------p~~~I~ll~qD~qG-~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l 287 (671)
T COG3292 241 GPM--L-----------------------------PSGNILLLVQDAQG-ELWIGTENGLWRT-RLPRQGLQIPLSKMHL 287 (671)
T ss_pred CCC--C-----------------------------cchheeeeecccCC-CEEEeecccceeE-ecCCCCccccccccCC
Confidence 000 0 22233333333333 5667776664433 3332222 2222222
Q ss_pred -CCceeEEEEcCCCEEEEEeCCCcEEEEeC
Q 012007 277 -DDAINSVVAGFDSLVFTGSADGTVKVWRR 305 (473)
Q Consensus 277 -~~~v~~l~~~~~~~l~s~~~dg~i~vwd~ 305 (473)
-..|+++....++.+-+++.+|.+++-+-
T Consensus 288 ~~S~vnsL~~D~dGsLWv~t~~giv~~~~a 317 (671)
T COG3292 288 GVSTVNSLWLDTDGSLWVGTYGGIVRYLTA 317 (671)
T ss_pred ccccccceeeccCCCEeeeccCceEEEecc
Confidence 24566777777788888888888777553
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.71 E-value=10 Score=41.10 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=26.3
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISD 266 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~ 266 (473)
.....++|++...+++.+...|.|+++-...
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccc
Confidence 4566789999999999999999999997543
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=86.35 E-value=26 Score=31.87 Aligned_cols=135 Identities=13% Similarity=0.139 Sum_probs=73.1
Q ss_pred CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC------CCCcEEEEecCCcccccceeec-----
Q 012007 297 DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS------SDGLVNFWECEKHLSHGGVLRG----- 365 (473)
Q Consensus 297 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~----- 365 (473)
-..|++||.... .+ .....+-.+.|++|.|..+.++++.|. ....+..||+.+..-. .+.+
T Consensus 15 C~~lC~yd~~~~----qW--~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~--~~~~~~s~~ 86 (281)
T PF12768_consen 15 CPGLCLYDTDNS----QW--SSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS--SLGGGSSNS 86 (281)
T ss_pred CCEEEEEECCCC----Ee--ecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee--ecCCccccc
Confidence 346899997532 11 122223567899999987777777664 3557888998764321 1111
Q ss_pred CcceEEEEEe---cCC-EEEEEe-CCCc--EEEEecCCCCceeEEEE-ecCCCCceeEEEEecC-CCCCcccccCCCccE
Q 012007 366 HKMAVLCLAA---AGN-LVFSGS-ADRN--ICLWRREESGAHSCLAV-LTGHTGPVKCLAVEED-RDHDHEYHQKGDQRW 436 (473)
Q Consensus 366 ~~~~v~~~~~---~~~-~l~s~~-~dg~--i~iwd~~~~~~~~~~~~-~~~h~~~V~~l~~~~~-~~~~~~~~~~~~~~~ 436 (473)
-..++..+.+ ++. +.+.|. .++. |..||-.. +..+.. ..+-...|..+.+-+- ...........+.+.
T Consensus 87 ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~---W~~i~~~~~~~~t~I~~l~~~~l~~~~~~~~~~~~~~~~ 163 (281)
T PF12768_consen 87 IPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSS---WSSIGSDILGSGTTIRGLQVLPLNSSSHDNSSLFDSDQV 163 (281)
T ss_pred CCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCc---eEeccccccCCCCEEEEEEEEeccccccccccccCCCcE
Confidence 1245666655 443 444443 3443 55565433 555554 3333567888887776 211111111234445
Q ss_pred EEEEee
Q 012007 437 TVYSGS 442 (473)
Q Consensus 437 ~l~s~s 442 (473)
++++|.
T Consensus 164 Llv~G~ 169 (281)
T PF12768_consen 164 LLVTGS 169 (281)
T ss_pred EEEEee
Confidence 677766
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=86.01 E-value=29 Score=32.27 Aligned_cols=105 Identities=15% Similarity=0.132 Sum_probs=47.4
Q ss_pred CCCEEEEEeCC-----CCEEEEEcCCCee---eEEeecCCCc--eeEEEEcCCCEEEEEeC-----CCcEEEEeCcccCC
Q 012007 246 EQGLLYSGSWD-----KTLKVWRISDCKC---LESINAHDDA--INSVVAGFDSLVFTGSA-----DGTVKVWRRELQGK 310 (473)
Q Consensus 246 ~~~~l~s~s~d-----g~v~vwd~~~~~~---~~~~~~~~~~--v~~l~~~~~~~l~s~~~-----dg~i~vwd~~~~~~ 310 (473)
++.+++.|+.+ ..+..+|+.+.+- ...+..-..+ -.+++...+.+.+.|+. ...+..||+...
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~-- 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQ-- 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCC--
Confidence 44566666654 2466777766542 1222111111 11223333345555553 235777887632
Q ss_pred CcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC----cEEEEecCC
Q 012007 311 GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG----LVNFWECEK 355 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg----~i~iwd~~~ 355 (473)
.+.....+... ......+..-++++.+.|+.++ .+.+||.++
T Consensus 150 --~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 150 --EWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred --CeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 22222211111 1111122233566777777654 256788775
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.98 E-value=37 Score=33.32 Aligned_cols=102 Identities=14% Similarity=0.058 Sum_probs=55.4
Q ss_pred cEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEE
Q 012007 326 AVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAV 405 (473)
Q Consensus 326 ~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 405 (473)
.|..+..++.|..++..+.+|.+.++=.+. .-....+...+..|+|=. +.+.+ .+.+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~r-wG~~s~~eDgk~~v~CRt-----------------~~i~~-----~~ft 161 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKR-WGKNSEFEDGKSTVNCRT-----------------TPVAE-----RFFT 161 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhh-cCccceecCCCceEEEEe-----------------ecccc-----eeec
Confidence 567788999999999999999665543222 222223333333333321 11111 1111
Q ss_pred ecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccC
Q 012007 406 LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKG 461 (473)
Q Consensus 406 ~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~ 461 (473)
-.. .-.+..++|+|+.-. |. -|..-+.|..||+|++.+....+..
T Consensus 162 ss~-~ltl~Qa~WHP~S~~--------D~--hL~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 162 SST-SLTLKQAAWHPSSIL--------DP--HLVLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred cCC-ceeeeeccccCCccC--------Cc--eEEEEecCcEEEEEecCCcchhhcc
Confidence 111 123566788887620 00 4555667888888888876655443
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=85.94 E-value=5.4 Score=23.69 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=24.4
Q ss_pred CCCCEEEEEe-CCCCEEEEEcCCCeeeEEeec
Q 012007 245 AEQGLLYSGS-WDKTLKVWRISDCKCLESINA 275 (473)
Q Consensus 245 ~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~ 275 (473)
|++++|+++. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 4677777765 578899999999888887765
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=85.66 E-value=50 Score=34.59 Aligned_cols=111 Identities=12% Similarity=0.002 Sum_probs=62.3
Q ss_pred ccEEEEEEeCCCCEEEEEeCC-----CeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccC
Q 012007 162 GLVKAIIISGDSNKIFTGHQD-----GKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYD 236 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (473)
-.+..+.|+|||++|+-+... -.|++-|+.++...... ...
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~----------------------------------i~~ 172 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL----------------------------------LDN 172 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc----------------------------------ccC
Confidence 457788999999988865332 34888888766421110 011
Q ss_pred CeeEEEEcCCCCEEEEEeCC------CCEEEEEcCCC--eeeEEeecCCCcee-EEEEcCCC-EEEEE---eCCCcEEEE
Q 012007 237 AVSCLSLNAEQGLLYSGSWD------KTLKVWRISDC--KCLESINAHDDAIN-SVVAGFDS-LVFTG---SADGTVKVW 303 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~d------g~v~vwd~~~~--~~~~~~~~~~~~v~-~l~~~~~~-~l~s~---~~dg~i~vw 303 (473)
.-..++|.+|++.|+-...+ ..|+.+++.++ +-...+........ .+..+.++ +++.. ..++.+.++
T Consensus 173 ~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~ 252 (686)
T PRK10115 173 VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLL 252 (686)
T ss_pred cceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEE
Confidence 11458999988766555432 35788888877 33333333222232 22333344 33332 234678888
Q ss_pred eCc
Q 012007 304 RRE 306 (473)
Q Consensus 304 d~~ 306 (473)
+..
T Consensus 253 ~~~ 255 (686)
T PRK10115 253 DAE 255 (686)
T ss_pred ECc
Confidence 864
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=85.34 E-value=3 Score=42.23 Aligned_cols=38 Identities=26% Similarity=0.692 Sum_probs=28.8
Q ss_pred CeeEEEEcC----CCCEEEEEeCCCCEEEEEcCCCeeeEEee
Q 012007 237 AVSCLSLNA----EQGLLYSGSWDKTLKVWRISDCKCLESIN 274 (473)
Q Consensus 237 ~v~~l~~~~----~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 274 (473)
.+..++++. +..+|++.+.|+++++||+.+++++....
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 344555555 67899999999999999999999976653
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=85.00 E-value=36 Score=32.34 Aligned_cols=197 Identities=16% Similarity=0.187 Sum_probs=102.7
Q ss_pred CCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEc----CCC---EEEEEe-CC---CcEEEEeCcccCCCcc
Q 012007 245 AEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAG----FDS---LVFTGS-AD---GTVKVWRRELQGKGTK 313 (473)
Q Consensus 245 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~----~~~---~l~s~~-~d---g~i~vwd~~~~~~~~~ 313 (473)
|...+++....++-+.+||+ .|+.++.+.. +.++.+... -.+ -|+.++ .+ ..|++|.+.... ..
T Consensus 66 p~kSlIigTdK~~GL~VYdL-~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~--g~ 140 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDL-DGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDT--GE 140 (381)
T ss_dssp GGG-EEEEEETTTEEEEEET-TS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTT--TE
T ss_pred cccceEEEEeCCCCEEEEcC-CCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCC--Cc
Confidence 35567888888889999998 5666666642 344444321 122 244443 32 469999876311 11
Q ss_pred eeeee----eeccCCccEEEEEEc--c-CCC-EEEEeCCCCcEEEEecCC---cc---cccceeec-CcceEEEEEecCC
Q 012007 314 HCLAQ----VLLKHENAVTALAVN--Q-ESA-VVYCGSSDGLVNFWECEK---HL---SHGGVLRG-HKMAVLCLAAAGN 378 (473)
Q Consensus 314 ~~~~~----~~~~~~~~v~~l~~~--~-~~~-~l~~~~~dg~i~iwd~~~---~~---~~~~~~~~-~~~~v~~~~~~~~ 378 (473)
...+. .+......+..+|+- + ++. +++....+|.+..|.+.. +. ...+.+.. ....-+.+.-...
T Consensus 141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g 220 (381)
T PF02333_consen 141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETG 220 (381)
T ss_dssp EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTT
T ss_pred ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccC
Confidence 11100 011122346777763 3 343 666778889998887742 11 11122222 2222222233366
Q ss_pred EEEEEeCCCcEEEEecCCCC--ceeEEEEecC--CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 379 LVFSGSADRNICLWRREESG--AHSCLAVLTG--HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 379 ~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~--h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
+|+.|-++.-|.-|+.+... ....+....+ ...-|-.|++-.... ...++|+|.=.+++..||+...
T Consensus 221 ~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~---------g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 221 RLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSD---------GKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CC---------C-EEEEEEEGGGTEEEEEESST
T ss_pred CEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCC---------CCeEEEEEcCCCCeEEEEecCC
Confidence 89999999777777776322 2344444333 345678888765432 2234677777788999999875
Q ss_pred C
Q 012007 455 H 455 (473)
Q Consensus 455 ~ 455 (473)
.
T Consensus 292 ~ 292 (381)
T PF02333_consen 292 P 292 (381)
T ss_dssp T
T ss_pred C
Confidence 4
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.85 E-value=0.14 Score=48.42 Aligned_cols=137 Identities=12% Similarity=0.122 Sum_probs=86.9
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeee
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLA 317 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 317 (473)
...|-+.+.-++.++.+..|..||- .++...... ..+....++|..++ .++.+-..+.+.+||+.... ...+
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey---tqqL- 112 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY---TQQL- 112 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhh---HHHH-
Confidence 4557777666888888889999984 344443333 23344566776665 56667788999999986321 1111
Q ss_pred eeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeec-CcceEEEEEec-CCEEEEEeCC
Q 012007 318 QVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRG-HKMAVLCLAAA-GNLVFSGSAD 386 (473)
Q Consensus 318 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~-~~~l~s~~~d 386 (473)
..-..+.. .-+.|++....++.+...|.+.|++....... ...| |...++++++. ..+.+.++.|
T Consensus 113 E~gg~~s~--sll~wsKg~~el~ig~~~gn~viynhgtsR~i--iv~Gkh~RRgtq~av~lEd~vil~dcd 179 (615)
T KOG2247|consen 113 ESGGTSSK--SLLAWSKGTPELVIGNNAGNIVIYNHGTSRRI--IVMGKHQRRGTQIAVTLEDYVILCDCD 179 (615)
T ss_pred hccCcchH--HHHhhccCCccccccccccceEEEeccchhhh--hhhcccccceeEEEecccceeeecCcH
Confidence 11111222 22788998899999999999999998764332 2334 77777777765 4455555544
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=84.38 E-value=6.8 Score=39.72 Aligned_cols=70 Identities=17% Similarity=0.265 Sum_probs=41.2
Q ss_pred ecCCEEEEEeCCCcEEEEecCC----CCceeEEEE--------ecC-----------CCCceeEEEEec----CCCCCcc
Q 012007 375 AAGNLVFSGSADRNICLWRREE----SGAHSCLAV--------LTG-----------HTGPVKCLAVEE----DRDHDHE 427 (473)
Q Consensus 375 ~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~--------~~~-----------h~~~V~~l~~~~----~~~~~~~ 427 (473)
.+...|+.+..||.+....... +........ +.+ -...+..++++. +..
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 231 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDT---- 231 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTT----
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCC----
Confidence 3778888888999988887764 111111100 000 123455566655 333
Q ss_pred cccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 428 YHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 428 ~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
+|++.+.|+++|+|++.++..
T Consensus 232 ---------~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 232 ---------FLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp ---------EEEEEETTSEEEEEETTTTCE
T ss_pred ---------EEEEEeCCCeEEEEECCCCeE
Confidence 899999999999999998876
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.38 E-value=38 Score=32.20 Aligned_cols=158 Identities=19% Similarity=0.227 Sum_probs=79.5
Q ss_pred CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc
Q 012007 255 WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ 334 (473)
Q Consensus 255 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 334 (473)
.++.|.+||.++.. +...|. .+..++..+.+++-+..........++...+..|..+..
T Consensus 296 dN~~i~~~d~Rd~n------------~~~~W~---~i~~gt~~~~vrv~~~~~~~~~~~~~l~~~f~~~~~~L~------ 354 (465)
T KOG2714|consen 296 DNDLIVTEDFRDRN------------TSGNWI---EIAYGTSSGEVRVIDQHPETVGVGPCLFQTFEVHGSPLG------ 354 (465)
T ss_pred CCceEEEeeccCCC------------ccceEE---EecCCccccceEeeeccccccCCCCeEEEEEEecCCCcc------
Confidence 35678888887654 112221 345566677777777654443345555566666665521
Q ss_pred CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCC-------ceeEEEEec
Q 012007 335 ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESG-------AHSCLAVLT 407 (473)
Q Consensus 335 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~ 407 (473)
++=.+...+.+++|......-......+. ....|+ +.++.-..++..-.|.-+... ....+..+.
T Consensus 355 ---~idv~~~~~~~~~~~~tr~rGm~s~~pg~-~~~~s~----k~l~Le~~~~~~s~~~gNd~~~~gd~~d~~vfi~Kl~ 426 (465)
T KOG2714|consen 355 ---LIDVCSDGGHVRVWNSTRFRGMISTQPGS-TPEASF----KKLALEEGDEFSSMSSGNDSGPVGDGDDQQVFIQKLV 426 (465)
T ss_pred ---eeehhhhCCcceEEeecccccccccCCCC-Cccccc----ceeeehhccccceeeecccccccCCchhhhhhhhhhc
Confidence 33344555678999876432222222211 111111 112222223333333222110 011222222
Q ss_pred -CCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 408 -GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 408 -~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
...+.|..+++.-+. ++++=+.+..|.+|.+.+.
T Consensus 427 ~s~~~~i~~ls~gGdR--------------lfv~rs~~~~v~vw~~~~~ 461 (465)
T KOG2714|consen 427 PSAGGLIVRLSSGGDR--------------LFVVRSVESPVTVWEVLEC 461 (465)
T ss_pred cccCCcEEEEecCCee--------------EEEEEeccCceeEEEecCC
Confidence 234567777766554 7888888899999998754
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=84.29 E-value=18 Score=28.38 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=59.5
Q ss_pred EEEEEeCCCcEEEEeCcccCCCcc-eeeeeeeccCCccEEEEEEcc-----CCCEEEEeCCCCcEEEEecCCccccccee
Q 012007 290 LVFTGSADGTVKVWRRELQGKGTK-HCLAQVLLKHENAVTALAVNQ-----ESAVVYCGSSDGLVNFWECEKHLSHGGVL 363 (473)
Q Consensus 290 ~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 363 (473)
.|+.++.-|+|.|++......... ......+..-...|++|+-.+ +...|+.|+. ..|..||+...... ..
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~--Fy 88 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDL--FY 88 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchh--hh
Confidence 677788889999998764322111 111223344566778876544 3466777765 57999999864433 22
Q ss_pred ecCcceEEEEEe------cCCEEEEEeCCCcEEEEecCC
Q 012007 364 RGHKMAVLCLAA------AGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 364 ~~~~~~v~~~~~------~~~~l~s~~~dg~i~iwd~~~ 396 (473)
+.-...+.++.. ...++++|+ +..|.-||...
T Consensus 89 ke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G 126 (136)
T PF14781_consen 89 KEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEG 126 (136)
T ss_pred hhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCC
Confidence 222334444433 245555555 66777777665
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=83.70 E-value=31 Score=30.55 Aligned_cols=135 Identities=12% Similarity=0.116 Sum_probs=69.6
Q ss_pred EEEEEcCCCeeeEEeec-CCCceeEEEEcCCC-EEEEEeC-C--CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEc
Q 012007 259 LKVWRISDCKCLESINA-HDDAINSVVAGFDS-LVFTGSA-D--GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVN 333 (473)
Q Consensus 259 v~vwd~~~~~~~~~~~~-~~~~v~~l~~~~~~-~l~s~~~-d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 333 (473)
-.+||+.+++.. .+.. ......+-.+.++| ++.+|+. + ..+++++......................-.....-
T Consensus 48 s~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 457888776543 2221 22222223456777 5556554 2 357888764311111111111112233444556667
Q ss_pred cCCCEEEEeCCCC-cEEEEecCCccc-ccc--ee-------ecCcceEEEEEecCCEEEEEeCCCcEEEEecCC
Q 012007 334 QESAVVYCGSSDG-LVNFWECEKHLS-HGG--VL-------RGHKMAVLCLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 334 ~~~~~l~~~~~dg-~i~iwd~~~~~~-~~~--~~-------~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
+||+.|+.|+.+. ...+|.-..... ... .+ ...--+.+-+.++|++++.+..+. .|||..+
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~ 198 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKT 198 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCC
Confidence 8999999988875 344554321100 000 11 112234567788999999988654 4567776
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length | Back alignment and domain information |
|---|
Probab=83.38 E-value=3.8 Score=21.98 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=15.9
Q ss_pred cEEEEEecCCEEEEeeCCCcEEEe
Q 012007 125 HIYSLAASGDLLYTGSDSKNIRVW 148 (473)
Q Consensus 125 ~V~~~~~~g~~l~tg~~dg~i~vw 148 (473)
.|.+++....+++.+..-+.+|+|
T Consensus 3 ~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeEEec
Confidence 455666666677777666677665
|
The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=83.35 E-value=10 Score=31.58 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=25.6
Q ss_pred ccEEEEEEccCC------CEEEEeCCCCcEEEEecCC
Q 012007 325 NAVTALAVNQES------AVVYCGSSDGLVNFWECEK 355 (473)
Q Consensus 325 ~~v~~l~~~~~~------~~l~~~~~dg~i~iwd~~~ 355 (473)
..+.+++|+|.| -+|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999954 4788899999999997654
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=83.34 E-value=40 Score=31.65 Aligned_cols=68 Identities=7% Similarity=0.010 Sum_probs=33.9
Q ss_pred CCCEEEEeCCC-----------CcEEEEecCCccccc-ceee---cCcceEEEEEecCCEEEEEeCC-------------
Q 012007 335 ESAVVYCGSSD-----------GLVNFWECEKHLSHG-GVLR---GHKMAVLCLAAAGNLVFSGSAD------------- 386 (473)
Q Consensus 335 ~~~~l~~~~~d-----------g~i~iwd~~~~~~~~-~~~~---~~~~~v~~~~~~~~~l~s~~~d------------- 386 (473)
++++++.|+.+ ..|.+||.++..-.. .... ...........++++++.|+.+
T Consensus 137 ~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~ 216 (341)
T PLN02153 137 ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYES 216 (341)
T ss_pred CCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceec
Confidence 45666666653 247778876532110 0000 1111122334567766665532
Q ss_pred CcEEEEecCCCCceeEE
Q 012007 387 RNICLWRREESGAHSCL 403 (473)
Q Consensus 387 g~i~iwd~~~~~~~~~~ 403 (473)
..|.+||..+ ..+..+
T Consensus 217 ~~v~~yd~~~-~~W~~~ 232 (341)
T PLN02153 217 NAVQFFDPAS-GKWTEV 232 (341)
T ss_pred CceEEEEcCC-CcEEec
Confidence 3588888876 334444
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=83.25 E-value=43 Score=31.85 Aligned_cols=193 Identities=19% Similarity=0.280 Sum_probs=100.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCE--
Q 012007 172 DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGL-- 249 (473)
Q Consensus 172 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-- 249 (473)
...+++...+++-+.+||++...... ...+.. ..-+-...+.+ .++.
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk~lq~-~~~Gr~----------------------------NNVDvrygf~l--~g~~vD 115 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGKELQS-LPVGRP----------------------------NNVDVRYGFPL--NGKTVD 115 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-EEEE-E-SS-E----------------------------EEEEEEEEEEE--TTEEEE
T ss_pred ccceEEEEeCCCCEEEEcCCCcEEEe-ecCCCc----------------------------ceeeeecceec--CCceEE
Confidence 45678888888889999998764322 111100 01111222333 2222
Q ss_pred EEEEe-CC---CCEEEEEcC--CCeeeEEeec-------CCCceeEEEE--cC-CC--EEEEEeCCCcEEEEeCcccCCC
Q 012007 250 LYSGS-WD---KTLKVWRIS--DCKCLESINA-------HDDAINSVVA--GF-DS--LVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 250 l~s~s-~d---g~v~vwd~~--~~~~~~~~~~-------~~~~v~~l~~--~~-~~--~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
|+.++ .+ .+|++|.+. ++. +..+.. ....+..+|. ++ ++ +++....+|.+..|.+...+..
T Consensus 116 lavas~R~~g~n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g 194 (381)
T PF02333_consen 116 LAVASDRSDGRNSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDG 194 (381)
T ss_dssp EEEEEE-CCCT-EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTS
T ss_pred EEEEecCcCCCCeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCC
Confidence 33443 22 458888775 333 333221 1123556664 33 23 7778889999999988654332
Q ss_pred c-ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccc-cee---ec--CcceE--EEEEe--cC--C
Q 012007 312 T-KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHG-GVL---RG--HKMAV--LCLAA--AG--N 378 (473)
Q Consensus 312 ~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~---~~--~~~~v--~~~~~--~~--~ 378 (473)
. ...++..+. -.+.+..|.......+|+.+-++.-|.-|+.+-..... ..+ .+ ....+ +++-. ++ -
T Consensus 195 ~v~~~lVR~f~-~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gY 273 (381)
T PF02333_consen 195 KVSATLVREFK-VGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGY 273 (381)
T ss_dssp SEEEEEEEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EE
T ss_pred cEeeEEEEEec-CCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeE
Confidence 2 223334433 34578999999988999999888877777765221111 111 11 11222 33322 33 2
Q ss_pred EEEEEeCCCcEEEEecCCC
Q 012007 379 LVFSGSADRNICLWRREES 397 (473)
Q Consensus 379 ~l~s~~~dg~i~iwd~~~~ 397 (473)
+|++.-.+++..||+....
T Consensus 274 LivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 274 LIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEEGGGTEEEEEESSTT
T ss_pred EEEEcCCCCeEEEEecCCC
Confidence 4555556788999998864
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=82.37 E-value=68 Score=33.59 Aligned_cols=66 Identities=8% Similarity=0.027 Sum_probs=38.2
Q ss_pred EEEecCCEEEEeeCC-C----cEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCC------CeEEEEeCCCC
Q 012007 128 SLAASGDLLYTGSDS-K----NIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQD------GKIRIWKVSRK 193 (473)
Q Consensus 128 ~~~~~g~~l~tg~~d-g----~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d------g~i~vwd~~~~ 193 (473)
.++++|++|+.+.+. | .|++-|+...........+.-..++|.+|++.|+-...+ ..|+.+++.++
T Consensus 133 ~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 133 AITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred EECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCC
Confidence 456788888776443 2 466667643221111111112569999999877665443 35777777766
|
|
| >TIGR01063 gyrA DNA gyrase, A subunit | Back alignment and domain information |
|---|
Probab=81.59 E-value=79 Score=33.77 Aligned_cols=204 Identities=14% Similarity=0.061 Sum_probs=99.5
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCCEEEEEcC---C------Ceee---EEeecCCCceeEEEE---cCCCEEEEEeCCCcE
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRIS---D------CKCL---ESINAHDDAINSVVA---GFDSLVFTGSADGTV 300 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~---~------~~~~---~~~~~~~~~v~~l~~---~~~~~l~s~~~dg~i 300 (473)
+.+..+........|+..+.+|.+...... . |..+ ..+......+.++.. .++..++..+.+|.+
T Consensus 535 D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~Gyi 614 (800)
T TIGR01063 535 DFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVV 614 (800)
T ss_pred CeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEE
Confidence 344444444555666666767876665442 1 2222 122222333444443 344588999999999
Q ss_pred EEEeCcccCCCcc-eeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccc--------ceeecCcceEE
Q 012007 301 KVWRRELQGKGTK-HCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHG--------GVLRGHKMAVL 371 (473)
Q Consensus 301 ~vwd~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--------~~~~~~~~~v~ 371 (473)
+-.++........ ......+.. ...+..+........++..+..|.+..+....-.... ..+. ....+.
T Consensus 615 KRi~l~~~~~~~r~G~~aiklke-~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~-~~E~Vv 692 (800)
T TIGR01063 615 KKTSLTEFSNIRSNGIIAIKLDD-GDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLK-NEDFVV 692 (800)
T ss_pred EEEEhHHhhhhccCCcccccCCC-CCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCC-CCCEEE
Confidence 9987753221111 111111222 3444444444444556666777877666543211100 0111 112232
Q ss_pred EEE-e-cCCEEEEEeCCCcEEEEecCCC------CceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeC
Q 012007 372 CLA-A-AGNLVFSGSADRNICLWRREES------GAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSL 443 (473)
Q Consensus 372 ~~~-~-~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~ 443 (473)
++. . ++..++..+..|.++...+..- +.......+....+.+..+....+.. .++..+.
T Consensus 693 ~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kGv~~ikl~~~~d~lv~~~~v~~~~-------------~v~liT~ 759 (800)
T TIGR01063 693 SLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGKGVKSIKITDRNGQVVGAIAVDDDD-------------ELMLITS 759 (800)
T ss_pred EEEEeccccEEEEEecCCcEEEEEHHHccccCCCCcceEEEEccCCCCeEEEEEEecCCC-------------eEEEEec
Confidence 222 2 3457888888998888765421 11112222333233443433333322 3555567
Q ss_pred CCcEEEEEcCC
Q 012007 444 DKSVKVWRVSE 454 (473)
Q Consensus 444 Dg~v~iW~i~~ 454 (473)
+|.+..+.+.+
T Consensus 760 ~G~~lrf~~~e 770 (800)
T TIGR01063 760 AGKLIRTSVQD 770 (800)
T ss_pred CCeEEEeeHhh
Confidence 88887777664
|
This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=80.93 E-value=62 Score=32.11 Aligned_cols=69 Identities=6% Similarity=0.001 Sum_probs=36.2
Q ss_pred CCCEEEEeCCCC-----cEEEEecCCccccc-ce---eecCcceEEEEEecCCEEEEEeCC----CcEEEEecCCCCcee
Q 012007 335 ESAVVYCGSSDG-----LVNFWECEKHLSHG-GV---LRGHKMAVLCLAAAGNLVFSGSAD----RNICLWRREESGAHS 401 (473)
Q Consensus 335 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~-~~---~~~~~~~v~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~ 401 (473)
++++++.|+.++ .+..||+.+..-.. .. .............++++++.++.+ ..+.+||+.+ ..+.
T Consensus 278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t-~~W~ 356 (470)
T PLN02193 278 EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQ-DKWT 356 (470)
T ss_pred CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCC-CEEE
Confidence 456666776543 36677776532110 00 001111122334577888877765 4588999887 3344
Q ss_pred EEE
Q 012007 402 CLA 404 (473)
Q Consensus 402 ~~~ 404 (473)
.+.
T Consensus 357 ~~~ 359 (470)
T PLN02193 357 QVE 359 (470)
T ss_pred Eec
Confidence 443
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=80.93 E-value=51 Score=32.29 Aligned_cols=111 Identities=14% Similarity=0.168 Sum_probs=61.7
Q ss_pred CCCceeEEEEcCCCEEEEEeC-CCcEEEEeCcccCCCcceeeeeee-ccCCccEEEEEEccCC------CEEEEeC----
Q 012007 276 HDDAINSVVAGFDSLVFTGSA-DGTVKVWRRELQGKGTKHCLAQVL-LKHENAVTALAVNQES------AVVYCGS---- 343 (473)
Q Consensus 276 ~~~~v~~l~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~------~~l~~~~---- 343 (473)
.-..-+.|+|.|++.++.... .|.|++++...........+.... .........|+++|+- .+|+...
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 345678899999997777776 599999975432110100111111 1236778999999874 3444432
Q ss_pred ------CCCcEEEEecCCc----cccccee------ecCcceEEEEEecCCEEEEEeCC
Q 012007 344 ------SDGLVNFWECEKH----LSHGGVL------RGHKMAVLCLAAAGNLVFSGSAD 386 (473)
Q Consensus 344 ------~dg~i~iwd~~~~----~~~~~~~------~~~~~~v~~~~~~~~~l~s~~~d 386 (473)
....|.-|.+... .....++ ..|...-+.+.+||.++++.+..
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1223444544311 0011111 24777778888999876655543
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=80.60 E-value=14 Score=36.09 Aligned_cols=32 Identities=22% Similarity=0.504 Sum_probs=25.2
Q ss_pred CccEEEEEEccCCCEEEEeCCCCcEEEEecCC
Q 012007 324 ENAVTALAVNQESAVVYCGSSDGLVNFWECEK 355 (473)
Q Consensus 324 ~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~ 355 (473)
+..|.+++..+..+.|++.+.+|.|.+|++..
T Consensus 189 ~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 189 RPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp ---EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 34589999999889999999999999999964
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=80.47 E-value=50 Score=30.75 Aligned_cols=62 Identities=10% Similarity=0.152 Sum_probs=33.6
Q ss_pred CCCEEEEeCC-----CCcEEEEecCCcccc-cceeec-CcceEEEEEecCCEEEEEeCCCc----EEEEecCC
Q 012007 335 ESAVVYCGSS-----DGLVNFWECEKHLSH-GGVLRG-HKMAVLCLAAAGNLVFSGSADRN----ICLWRREE 396 (473)
Q Consensus 335 ~~~~l~~~~~-----dg~i~iwd~~~~~~~-~~~~~~-~~~~v~~~~~~~~~l~s~~~dg~----i~iwd~~~ 396 (473)
++.+.+.|+. ...+..||+.+..-. ...+.. ......+...++++.+.|+.++. +.+||..+
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 4566666664 235788888753211 111111 11222334567788888876643 56788876
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 473 | ||||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 1e-15 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 2e-15 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 6e-15 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 2e-14 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 4e-14 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 9e-07 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 6e-14 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 3e-12 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 7e-14 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 4e-12 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 9e-14 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 3e-12 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-13 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 4e-12 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-13 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 5e-12 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 1e-13 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 5e-12 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 2e-13 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 6e-12 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-13 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 6e-12 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-13 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 6e-12 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 2e-13 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 5e-12 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 2e-13 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 5e-12 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 2e-13 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 6e-12 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-13 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 4e-12 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 4e-13 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 3e-12 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 4e-13 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 7e-12 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 3e-04 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 5e-13 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 7e-12 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 6e-13 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 6e-12 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 2e-12 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 3e-07 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 5e-05 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 4e-11 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 6e-11 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 1e-09 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 5e-09 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 6e-09 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 8e-09 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 9e-09 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 9e-09 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 1e-08 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 1e-08 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 1e-08 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 7e-08 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 9e-08 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 3e-06 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 6e-05 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 3e-06 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 5e-05 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 4e-06 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 3e-05 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 4e-06 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 4e-05 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 4e-06 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 7e-05 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 8e-06 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 1e-05 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 7e-05 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 1e-04 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 1e-04 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 2e-04 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 3e-04 | ||
| 4g56_B | 357 | Crystal Structure Of Full Length Prmt5/mep50 Comple | 3e-04 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 4e-04 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 4e-04 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 5e-04 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 6e-04 | ||
| 1r5m_A | 425 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 6e-04 |
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 473 | |||
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.98 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.98 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.97 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.96 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.95 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.94 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.94 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.94 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.93 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.93 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.92 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.92 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.91 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.9 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.9 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.9 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.9 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.89 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.88 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.88 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.88 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.88 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.87 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.87 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.87 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.87 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.87 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.86 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.86 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.86 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.85 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.83 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.83 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.83 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.82 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.82 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.82 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.82 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.81 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.8 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.8 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.78 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.77 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.76 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.75 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.74 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.73 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.73 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.73 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.72 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.71 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.7 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.7 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.69 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.68 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.67 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.67 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.67 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.66 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.65 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.63 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.61 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.61 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.59 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.59 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.59 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.58 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.57 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.57 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.57 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.56 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.55 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.55 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.54 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.51 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.51 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.5 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.49 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.48 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.46 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.46 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.44 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.43 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.43 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.43 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.41 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.39 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.38 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.37 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.36 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.33 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.31 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.3 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.3 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.29 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.28 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.26 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.25 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.24 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.23 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.13 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.12 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.1 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.07 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.06 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.03 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.03 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.0 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.98 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.96 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.96 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.93 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.91 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.9 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.9 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.86 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.82 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.82 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.8 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.78 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.7 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.68 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.67 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.67 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.66 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.63 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.62 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.61 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.6 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.59 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.58 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.57 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.57 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.5 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.48 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.46 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.43 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.41 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.4 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.38 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.37 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.36 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.32 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.27 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.24 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.23 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.22 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.21 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.21 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.21 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.2 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.2 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.19 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.18 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.15 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.13 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.13 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.11 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.09 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.04 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.02 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.97 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.95 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.94 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.9 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.86 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.85 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.84 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.83 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.77 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.7 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.68 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.61 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.58 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.57 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.56 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 97.54 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.53 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.49 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.49 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.42 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.38 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.37 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.34 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.33 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.25 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.22 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.16 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.12 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.11 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.11 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.08 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.01 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 96.93 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.9 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 96.85 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.72 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.66 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.66 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.6 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.58 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 96.45 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.45 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.44 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.37 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.04 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 96.02 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.93 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 95.9 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 95.71 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 95.61 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 95.57 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 95.55 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.24 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.18 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.07 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 94.84 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 94.73 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 94.63 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.5 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 94.45 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 94.36 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 94.29 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.2 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 93.83 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 88.42 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 87.85 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 86.76 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 85.9 | |
| 3mvd_K | 423 | Regulator of chromosome condensation; protein-DNA | 85.89 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 84.45 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 82.86 | |
| 3l6v_A | 370 | GYRA, DNA gyrase subunit A; gyrase A C-terminal do | 80.57 |
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-45 Score=339.77 Aligned_cols=285 Identities=18% Similarity=0.270 Sum_probs=251.3
Q ss_pred cceeeeeeecccEEEEEec------CCEEEEeeCCCcEEEeeCCc----cccccccCcccEEEEEEeCCCCEEEEEeCCC
Q 012007 114 GLIGSIVRKEGHIYSLAAS------GDLLYTGSDSKNIRVWKNLK----EFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~------g~~l~tg~~dg~i~vwd~~~----~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 183 (473)
.+...+.+|.+.|++++++ +++|++|+.|++|+||+... ....+.+|...|.+++|++++.++++++.|+
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 3456678999999999974 56999999999999998642 2345789999999999999999999999999
Q ss_pred eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEE
Q 012007 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWR 263 (473)
Q Consensus 184 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd 263 (473)
.|++||+.+++...... .|...+.+++|+|++++|++|+.|+.|++||
T Consensus 103 ~i~lWd~~~~~~~~~~~--------------------------------~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~ 150 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSID--------------------------------AGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 150 (321)
T ss_dssp EEEEEETTTTEEEEEEE--------------------------------CCTTCCCCEEECTTSSEEEEECTTSEEEEEE
T ss_pred cEEEEECCCCCEEEEEe--------------------------------CCCccEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 99999998876543332 2677889999999999999999999999999
Q ss_pred cCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe
Q 012007 264 ISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG 342 (473)
Q Consensus 264 ~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~ 342 (473)
+++++....+..|...|.+++|+|++ +|++|+.||.|++||++.+ .....+.+|...|.+++|+|++++|+++
T Consensus 151 ~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~------~~~~~~~~h~~~v~~l~~spd~~~l~s~ 224 (321)
T 3ow8_A 151 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG------KLLHTLEGHAMPIRSLTFSPDSQLLVTA 224 (321)
T ss_dssp TTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------EEEEEECCCSSCCCEEEECTTSCEEEEE
T ss_pred cCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC------cEEEEEcccCCceeEEEEcCCCCEEEEE
Confidence 99999999999999999999999998 8999999999999999732 3456678899999999999999999999
Q ss_pred CCCCcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEec
Q 012007 343 SSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEE 420 (473)
Q Consensus 343 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~ 420 (473)
+.|+.|++||++.... ...+.+|...|.++++ ++.+|++|+.|++|++||+.+ ..++..+.+|.+.|.+++|+|
T Consensus 225 s~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~---~~~~~~~~~h~~~v~~v~~s~ 300 (321)
T 3ow8_A 225 SDDGYIKIYDVQHANL-AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT---RTCVHTFFDHQDQVWGVKYNG 300 (321)
T ss_dssp CTTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECT
T ss_pred cCCCeEEEEECCCcce-eEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC---CEEEEEEcCCCCcEEEEEECC
Confidence 9999999999987543 4567889988877664 689999999999999999988 678899999999999999999
Q ss_pred CCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 421 DRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
++. +|++++.||.|+|||..
T Consensus 301 ~g~-------------~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 301 NGS-------------KIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TSS-------------EEEEEETTCCEEEEECC
T ss_pred CCC-------------EEEEEeCCCeEEEEeCC
Confidence 998 89999999999999964
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-45 Score=353.45 Aligned_cols=282 Identities=22% Similarity=0.377 Sum_probs=249.8
Q ss_pred eeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q 012007 116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVS 191 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~ 191 (473)
...+.+|.+.|+++.++ +.+|++|+.||+|+|||.. +....+.+|.+.|.+++|+|++++|++|+.||+|++||+.
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 45678999999998875 7899999999999999965 4567889999999999999999999999999999999998
Q ss_pred CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeE
Q 012007 192 RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE 271 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~ 271 (473)
+.+...... +|...|.+++|+|++++|++|+.|++|++||+++++++.
T Consensus 181 ~~~~~~~~~--------------------------------~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~ 228 (410)
T 1vyh_C 181 GFECIRTMH--------------------------------GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK 228 (410)
T ss_dssp SSCEEECCC--------------------------------CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCceeEEEc--------------------------------CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 765432221 489999999999999999999999999999999999999
Q ss_pred EeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC---------------
Q 012007 272 SINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE--------------- 335 (473)
Q Consensus 272 ~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--------------- 335 (473)
.+.+|...|.++.+++++ ++++|+.|+.|++||++.. .....+..|...|.+++|+|+
T Consensus 229 ~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~ 302 (410)
T 1vyh_C 229 TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK------ECKAELREHRHVVECISWAPESSYSSISEATGSETK 302 (410)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC--
T ss_pred EEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCC------ceeeEecCCCceEEEEEEcCcccccchhhhcccccc
Confidence 999999999999999988 8999999999999999743 234567789999999999996
Q ss_pred -----CCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEecC
Q 012007 336 -----SAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLTG 408 (473)
Q Consensus 336 -----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 408 (473)
+.+|++|+.|+.|++||++++... ..+.+|...|.++.+ ++++|++|+.||.|++||+.+ ..++..+.+
T Consensus 303 ~~~~~g~~l~sgs~D~~i~iwd~~~~~~~-~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~---~~~~~~~~~ 378 (410)
T 1vyh_C 303 KSGKPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN---KRCMKTLNA 378 (410)
T ss_dssp -----CCEEEEEETTSEEEEEETTTTEEE-EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT---SCCCEEEEC
T ss_pred ccCCCCCEEEEEeCCCeEEEEECCCCceE-EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CceEEEEcC
Confidence 678999999999999999886543 567789988877664 689999999999999999987 567788899
Q ss_pred CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 409 HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 409 h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
|...|++++|+|++. +|++|+.||+|+||++
T Consensus 379 h~~~v~~l~~~~~~~-------------~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 379 HEHFVTSLDFHKTAP-------------YVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CSSCEEEEEECSSSS-------------CEEEEETTSEEEEEC-
T ss_pred CCCcEEEEEEcCCCC-------------EEEEEeCCCcEEEEeC
Confidence 999999999999998 8999999999999986
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-44 Score=337.40 Aligned_cols=286 Identities=20% Similarity=0.337 Sum_probs=243.5
Q ss_pred ceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
...+|.+|.+.|.++.++ +++|++|+.||+|+|||.. +.+..+..|...|.+++|+|++++|++|+.|+.|++|++
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~ 126 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 367889999999998874 8899999999999999965 456677889999999999999999999999999999999
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL 270 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~ 270 (473)
.+........ ....+|...|.++.|++++ .+++++.|++|++||+++++.+
T Consensus 127 ~~~~~~~~~~----------------------------~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~ 177 (340)
T 1got_B 127 KTREGNVRVS----------------------------RELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQT 177 (340)
T ss_dssp TTCSBSCEEE----------------------------EEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEE
T ss_pred ccCCCcceeE----------------------------EEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEE
Confidence 8754211110 1122599999999999876 4899999999999999999999
Q ss_pred EEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEE
Q 012007 271 ESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVN 349 (473)
Q Consensus 271 ~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~ 349 (473)
..+.+|...|.+++|+|++ ++++|+.|+.|++||++.. .....+.+|...|++++|+|++++|++++.||.|+
T Consensus 178 ~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~ 251 (340)
T 1got_B 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG------MCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC------SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC------eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEE
Confidence 9999999999999999988 8999999999999999743 23466788999999999999999999999999999
Q ss_pred EEecCCccccccee-ecCcceEE--EEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCc
Q 012007 350 FWECEKHLSHGGVL-RGHKMAVL--CLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDH 426 (473)
Q Consensus 350 iwd~~~~~~~~~~~-~~~~~~v~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~ 426 (473)
+||++......... ..+...+. ++++++++|++|+.|+.|++||+.+ ...+..+.+|.+.|++++|+|++.
T Consensus 252 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~---~~~~~~~~~h~~~v~~~~~s~dg~--- 325 (340)
T 1got_B 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK---ADRAGVLAGHDNRVSCLGVTDDGM--- 325 (340)
T ss_dssp EEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTT---CCEEEEEECCSSCEEEEEECTTSS---
T ss_pred EEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEccc---CcEeeEeecCCCcEEEEEEcCCCC---
Confidence 99998754432211 12223454 4556799999999999999999988 567788899999999999999998
Q ss_pred ccccCCCccEEEEEeeCCCcEEEEE
Q 012007 427 EYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 427 ~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
+|++|+.||.|+|||
T Consensus 326 ----------~l~s~s~D~~i~iWd 340 (340)
T 1got_B 326 ----------AVATGSWDSFLKIWN 340 (340)
T ss_dssp ----------CEEEEETTSCEEEEC
T ss_pred ----------EEEEEcCCccEEecC
Confidence 899999999999996
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-44 Score=335.34 Aligned_cols=284 Identities=20% Similarity=0.212 Sum_probs=226.5
Q ss_pred ecccEEEEE--ecCCEEEEeeCCCcEEEeeCC-----c--------cccccccCcccEEEEEEeCCCCEEEEEeCCCeEE
Q 012007 122 KEGHIYSLA--ASGDLLYTGSDSKNIRVWKNL-----K--------EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIR 186 (473)
Q Consensus 122 h~~~V~~~~--~~g~~l~tg~~dg~i~vwd~~-----~--------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~ 186 (473)
|+..|.++. +||++|++++ |+++++||.. . .......|...|.+++|++++ .|++|+.||.|+
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~ 106 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVE 106 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEE
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEE
Confidence 455566665 5689999888 6788888721 0 111122356789999999986 788999999999
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD 266 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~ 266 (473)
|||+.+++....... ...+|.+.|.+++|+|++++|++|+.|++|++||+++
T Consensus 107 lWd~~~~~~~~~~~~----------------------------~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 107 LWELDENETLIVSKF----------------------------CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EEEECTTSSCEEEEE----------------------------EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEeccCCCceeEeec----------------------------cccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 999998865443321 1225999999999999999999999999999999999
Q ss_pred CeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC-CCEEEEeC
Q 012007 267 CKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE-SAVVYCGS 343 (473)
Q Consensus 267 ~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~ 343 (473)
++++..+.+|...|.+++|++++ +|++++.|+.|++||++.... ........+...+.+++|+|+ +++|++|+
T Consensus 159 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~ 234 (344)
T 4gqb_B 159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP----ASQIGCSAPGYLPTSLAWHPQQSEVFVFGD 234 (344)
T ss_dssp TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC----EEECC----CCCEEEEEECSSCTTEEEEEE
T ss_pred CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce----eeeeecceeeccceeeeecCCCCcceEEec
Confidence 99999999999999999999886 789999999999999975331 111123455667999999994 57899999
Q ss_pred CCCcEEEEecCCcccccceeecCcceEEEEEe--cC-CEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEec
Q 012007 344 SDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AG-NLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEE 420 (473)
Q Consensus 344 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~ 420 (473)
.||.|++||++++.. ...+.+|...|.++.+ ++ ++|++|+.|++|+|||+.++ + +..+.+|.+.|++++|+|
T Consensus 235 ~dg~v~~wd~~~~~~-~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~---~-~~~~~~H~~~V~~v~~sp 309 (344)
T 4gqb_B 235 ENGTVSLVDTKSTSC-VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS---E-LFRSQAHRDFVRDATWSP 309 (344)
T ss_dssp TTSEEEEEESCC--C-CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC---E-EEEECCCSSCEEEEEECS
T ss_pred cCCcEEEEECCCCcE-EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC---c-EEEEcCCCCCEEEEEEeC
Confidence 999999999997644 4677899999988775 55 68999999999999999873 3 345789999999999999
Q ss_pred CCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 421 DRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
++.. +|+|||.||+|++|++....
T Consensus 310 ~~~~------------llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 310 LNHS------------LLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp SSTT------------EEEEEETTSCEEEEECCC--
T ss_pred CCCe------------EEEEEcCCCeEEEEECCCCC
Confidence 9874 78899999999999998654
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=331.84 Aligned_cols=298 Identities=19% Similarity=0.285 Sum_probs=232.3
Q ss_pred cceeeeeeecccEEEEEecCCEEEEeeCCCcEEEeeCCc----ccccc-cc-CcccEEEEEEeCCCCEEEEEeCCCeEEE
Q 012007 114 GLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLK----EFSGF-KS-NSGLVKAIIISGDSNKIFTGHQDGKIRI 187 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~g~~l~tg~~dg~i~vwd~~~----~~~~~-~~-h~~~V~~l~~s~~~~~l~s~~~dg~i~v 187 (473)
.++.++.+|.+.|.++++++++||+|+.|++|+|||+.. ....+ .+ |.+.|.+++|+|++++|++|+.|+.|++
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~i 84 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSI 84 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ccceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 357789999999999999988999999999999999763 22333 34 9999999999999999999999999999
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC-
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD- 266 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~- 266 (473)
||+........ . ........+|...|.+++|+|++++|++|+.|++|++||+..
T Consensus 85 w~~~~~~~~~~-~------------------------~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~ 139 (330)
T 2hes_X 85 WAKEESADRTF-E------------------------MDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDES 139 (330)
T ss_dssp EEC-------C-C------------------------CEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTT
T ss_pred EEcccCcCccc-c------------------------ceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCC
Confidence 99864321000 0 000112235999999999999999999999999999999943
Q ss_pred ---CeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC--CCEEE
Q 012007 267 ---CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE--SAVVY 340 (473)
Q Consensus 267 ---~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~ 340 (473)
.+++..+.+|...|.+++|+|++ +|++++.|+.|++||.... .......+.+|...|.+++|+|+ +.+|+
T Consensus 140 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 215 (330)
T 2hes_X 140 GEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD----DWECVAVLNGHEGTVWSSDFDKTEGVFRLC 215 (330)
T ss_dssp CCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT----EEEEEEEECCCSSCEEEEEECCSSSSCEEE
T ss_pred CCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC----CeeEEEEccCCCCcEEEEEecCCCCeeEEE
Confidence 35678889999999999999987 8999999999999997632 22345677899999999999998 67899
Q ss_pred EeCCCCcEEEEecCCcc-------cccceee-cCcceEEEEEec-CCEEEEEeCCCcEEEEecCCCCceeEE-EEecCCC
Q 012007 341 CGSSDGLVNFWECEKHL-------SHGGVLR-GHKMAVLCLAAA-GNLVFSGSADRNICLWRREESGAHSCL-AVLTGHT 410 (473)
Q Consensus 341 ~~~~dg~i~iwd~~~~~-------~~~~~~~-~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~h~ 410 (473)
+++.|+.|++||++... .....+. .|...|.++++. +.+|++++.||.|++|+..++. ...+ ....+|.
T Consensus 216 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~-~~~~~~~~~~h~ 294 (330)
T 2hes_X 216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGE-WKVFAKRALCHG 294 (330)
T ss_dssp EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTE-EEEEEEESCTTT
T ss_pred EEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCc-eEEEeccccccc
Confidence 99999999999987532 1112233 388889888875 5689999999999999987632 2333 3446788
Q ss_pred C-ceeEEEEec--CCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 411 G-PVKCLAVEE--DRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 411 ~-~V~~l~~~~--~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
. .|.+++|+| ++. +|++|+.||+|+||++..
T Consensus 295 ~~~v~~v~~~~~~~~~-------------~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 295 VYEINVVKWLELNGKT-------------ILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TSCEEEEEEC-----C-------------CEEEEETTSEEEEEEC--
T ss_pred cceEEEEEEecCCCce-------------EEEEecCCCcEEEEEecc
Confidence 7 899999999 565 799999999999999864
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-43 Score=332.26 Aligned_cols=300 Identities=21% Similarity=0.277 Sum_probs=239.4
Q ss_pred cceeeeeeecc-cEEEEEe--cCCEEEEeeCCCcEEEeeCCcc-----ccccccCcccEEEEEEeCCCCEEEEEeCCCeE
Q 012007 114 GLIGSIVRKEG-HIYSLAA--SGDLLYTGSDSKNIRVWKNLKE-----FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKI 185 (473)
Q Consensus 114 ~~~~~l~~h~~-~V~~~~~--~g~~l~tg~~dg~i~vwd~~~~-----~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i 185 (473)
.++.++.+|.+ .|+++++ +|++||+|+.|++|+|||.... .....+|...|.+++|+|++++|++|+.|+.|
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v 85 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT 85 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence 45778889987 7877665 5899999999999999986532 12346899999999999999999999999999
Q ss_pred EEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 012007 186 RIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS 265 (473)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~ 265 (473)
++|++.......... ..+|...|.+++|+|++++|++|+.|++|++||+.
T Consensus 86 ~iw~~~~~~~~~~~~------------------------------~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~ 135 (345)
T 3fm0_A 86 CIWKKNQDDFECVTT------------------------------LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD 135 (345)
T ss_dssp EEEEECCC-EEEEEE------------------------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred EEEEccCCCeEEEEE------------------------------ccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECC
Confidence 999987664322221 12499999999999999999999999999999998
Q ss_pred CC---eeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEE
Q 012007 266 DC---KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC 341 (473)
Q Consensus 266 ~~---~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~ 341 (473)
++ +++..+..|...|.+++|+|++ +|++++.|+.|++||.+.. .......+.+|...|++++|+|++++|++
T Consensus 136 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~----~~~~~~~~~~h~~~v~~l~~sp~g~~l~s 211 (345)
T 3fm0_A 136 EEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEED----DWVCCATLEGHESTVWSLAFDPSGQRLAS 211 (345)
T ss_dssp TTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETT----EEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCC----CEEEEEEecCCCCceEEEEECCCCCEEEE
Confidence 75 4567788999999999999998 8999999999999998632 22334667899999999999999999999
Q ss_pred eCCCCcEEEEecCCcccc--------------cceee-cCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCc-----
Q 012007 342 GSSDGLVNFWECEKHLSH--------------GGVLR-GHKMAVLCLAA--AGNLVFSGSADRNICLWRREESGA----- 399 (473)
Q Consensus 342 ~~~dg~i~iwd~~~~~~~--------------~~~~~-~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~----- 399 (473)
++.|+.|++||....... ...+. .|...|.++++ ++.+|++++.|+.|++|+......
T Consensus 212 ~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~ 291 (345)
T 3fm0_A 212 CSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPT 291 (345)
T ss_dssp EETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCC
T ss_pred EeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceee
Confidence 999999999996432111 11122 27777777665 588999999999999999875321
Q ss_pred e-eEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCc
Q 012007 400 H-SCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDL 459 (473)
Q Consensus 400 ~-~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~ 459 (473)
. .......+|...|++++|+|++.. +|++|+.||+|++|++...++..
T Consensus 292 ~~~~~~~~~~h~~~V~~v~~~p~~~~------------~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 292 FSLTAHLHQAHSQDVNCVAWNPKEPG------------LLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp EEEEEEETTSSSSCEEEEEECSSSTT------------EEEEEETTSCEEEEEECC-----
T ss_pred EEEEeeecccccCcEeEeEEeCCCce------------EEEEcCCCCcEEEEEecCCCCcc
Confidence 1 122345689999999999998743 89999999999999998877543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-43 Score=326.06 Aligned_cols=284 Identities=22% Similarity=0.399 Sum_probs=238.1
Q ss_pred cceeeeeeecccEEEEEec---CCEEEEeeCCCcEEEeeCC-------ccccccccCcccEEEEEEeCCCCEEEEEeCCC
Q 012007 114 GLIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNL-------KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~---g~~l~tg~~dg~i~vwd~~-------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 183 (473)
.+..+|.+|.+.|.+++++ +++|++|+.|++|++|+.. ..+..+.+|...|.+++|++++++|++|+.|+
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence 4567899999999999875 4799999999999999864 23567889999999999999999999999999
Q ss_pred eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEE
Q 012007 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWR 263 (473)
Q Consensus 184 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd 263 (473)
+|++||+.+++...... +|...|.+++|+|++.+|++|+.|++|++||
T Consensus 88 ~v~~wd~~~~~~~~~~~--------------------------------~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd 135 (319)
T 3frx_A 88 TLRLWDVATGETYQRFV--------------------------------GHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135 (319)
T ss_dssp EEEEEETTTTEEEEEEE--------------------------------CCSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred EEEEEECCCCCeeEEEc--------------------------------cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 99999998876443322 4999999999999999999999999999999
Q ss_pred cCCCeeeEEeecCCCceeEEEEcCCC-------EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC
Q 012007 264 ISDCKCLESINAHDDAINSVVAGFDS-------LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES 336 (473)
Q Consensus 264 ~~~~~~~~~~~~~~~~v~~l~~~~~~-------~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 336 (473)
++ ++++..+.+|...|.++.+.|.. .+++++.|+.|++||++. ......+.+|...|.+++|+|++
T Consensus 136 ~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~------~~~~~~~~~h~~~v~~~~~sp~g 208 (319)
T 3frx_A 136 IK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ------FQIEADFIGHNSNINTLTASPDG 208 (319)
T ss_dssp TT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT------TEEEEEECCCCSCEEEEEECTTS
T ss_pred CC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc------chhheeecCCCCcEEEEEEcCCC
Confidence 96 56778888999999999998853 799999999999999963 23455677899999999999999
Q ss_pred CEEEEeCCCCcEEEEecCCcccccceeecCcceE--EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEec-------
Q 012007 337 AVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLT------- 407 (473)
Q Consensus 337 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------- 407 (473)
++|++++.||.|++||+++..... .+..+ ..+ .++++++.+|++++.+ .+++|++.. ...+..+.
T Consensus 209 ~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~---~~~~~~~~~~~~~~~ 282 (319)
T 3frx_A 209 TLIASAGKDGEIMLWNLAAKKAMY-TLSAQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSLDP---QYLVDDLRPEFAGYS 282 (319)
T ss_dssp SEEEEEETTCEEEEEETTTTEEEE-EEECC-SCEEEEEECSSSSEEEEEETT-EEEEEEETT---EEEEEEECCCCTTCC
T ss_pred CEEEEEeCCCeEEEEECCCCcEEE-EecCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCc---CeeeeccCccccccc
Confidence 999999999999999998765443 33332 345 4556678999888855 599999987 44444443
Q ss_pred -CCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 408 -GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 408 -~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
.|...|.+++|+|+++ +|++|+.||.|+||++.+.
T Consensus 283 ~~~~~~v~~~~~spdg~-------------~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 283 KAAEPHAVSLAWSADGQ-------------TLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp GGGCCCEEEEEECTTSS-------------EEEEEETTSCEEEEEEEEC
T ss_pred cCcCcceeEEEECCCCC-------------EEEEeecCceEEEEEEeec
Confidence 2456789999999999 8999999999999998754
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-43 Score=331.90 Aligned_cols=289 Identities=18% Similarity=0.282 Sum_probs=243.8
Q ss_pred cceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEe
Q 012007 114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd 189 (473)
....+|.+|.+.|++++++ +++|++|+.||+|+|||.. +....+..|...|.+++|+|++.+|++|+.|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 3467899999999999875 8899999999999999965 44556777889999999999999999999999999999
Q ss_pred CCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee
Q 012007 190 VSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
+......... .......+|...|.+++|++++..|++++.|++|++||++++++
T Consensus 135 ~~~~~~~~~~--------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~ 188 (354)
T 2pbi_B 135 LTFDKNENMA--------------------------AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL 188 (354)
T ss_dssp CCCCTTCCSG--------------------------GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE
T ss_pred Eecccccccc--------------------------ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE
Confidence 8654211000 00112235999999999999999999999999999999999999
Q ss_pred eEEeecCCCceeEEEEcCC---CEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC
Q 012007 270 LESINAHDDAINSVVAGFD---SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG 346 (473)
Q Consensus 270 ~~~~~~~~~~v~~l~~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg 346 (473)
+..+.+|...|.++.+++. .+|++|+.||.|++||++.+. ....+..|...|++++|+|++.+|++++.|+
T Consensus 189 ~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~ 262 (354)
T 2pbi_B 189 LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ------CVQAFETHESDVNSVRYYPSGDAFASGSDDA 262 (354)
T ss_dssp EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC------EEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc------EEEEecCCCCCeEEEEEeCCCCEEEEEeCCC
Confidence 9999999999999999874 389999999999999997432 3556788999999999999999999999999
Q ss_pred cEEEEecCCcccccceeecC--cceE--EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCC
Q 012007 347 LVNFWECEKHLSHGGVLRGH--KMAV--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDR 422 (473)
Q Consensus 347 ~i~iwd~~~~~~~~~~~~~~--~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 422 (473)
.|++||++...... .+..+ ...+ .++++++.+|++|+.|+.|++||+.+ ...+..+.+|.+.|++++|+|++
T Consensus 263 ~v~lwd~~~~~~~~-~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~---~~~~~~l~~h~~~v~~l~~spdg 338 (354)
T 2pbi_B 263 TCRLYDLRADREVA-IYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLK---GSRVSILFGHENRVSTLRVSPDG 338 (354)
T ss_dssp CEEEEETTTTEEEE-EECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTT---CSEEEEECCCSSCEEEEEECTTS
T ss_pred eEEEEECCCCcEEE-EEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCC---CceEEEEECCCCcEEEEEECCCC
Confidence 99999998754332 22222 2234 45567799999999999999999987 46778889999999999999999
Q ss_pred CCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 423 DHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 423 ~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
. +|++|+.||+|+||+
T Consensus 339 ~-------------~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 339 T-------------AFCSGSWDHTLRVWA 354 (354)
T ss_dssp S-------------CEEEEETTSEEEEEC
T ss_pred C-------------EEEEEcCCCCEEecC
Confidence 8 899999999999995
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=321.73 Aligned_cols=289 Identities=18% Similarity=0.255 Sum_probs=243.9
Q ss_pred cceeeeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEe
Q 012007 114 GLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd 189 (473)
.+..++.+|.+.|.++++ ++++|++|+.||+|+|||.. ..+..+..|...|.+++|++++++|++|+.|+.|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 346789999999999886 48899999999999999976 45677888999999999999999999999999999999
Q ss_pred CCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC-e
Q 012007 190 VSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC-K 268 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~-~ 268 (473)
+.+++...... +|.+.|.+++|+|++++|++|+.|++|++||++++ .
T Consensus 84 ~~~~~~~~~~~--------------------------------~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~ 131 (304)
T 2ynn_A 84 YNTGEKVVDFE--------------------------------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131 (304)
T ss_dssp TTTCCEEEEEE--------------------------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE
T ss_pred CCCCcEEEEEe--------------------------------CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc
Confidence 99886544332 49999999999999999999999999999999887 5
Q ss_pred eeEEeecCCCceeEEEEcCC-C-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc--CCCEEEEeCC
Q 012007 269 CLESINAHDDAINSVVAGFD-S-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ--ESAVVYCGSS 344 (473)
Q Consensus 269 ~~~~~~~~~~~v~~l~~~~~-~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~ 344 (473)
....+.+|...|.+++|+|. + .|++|+.|+.|++||++... ........|...+..+.|+| ++.+|++++.
T Consensus 132 ~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~ 206 (304)
T 2ynn_A 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----PNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206 (304)
T ss_dssp EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSS-----CSEEEECCCTTCEEEEEECCSTTCCEEEEEET
T ss_pred hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC-----ccceeccCCcCcEEEEEEEEcCCCCEEEEEcC
Confidence 66778899999999999984 3 89999999999999997432 22333456778899999987 7789999999
Q ss_pred CCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCC
Q 012007 345 DGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDR 422 (473)
Q Consensus 345 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 422 (473)
|+.|++||++++.. ...+.+|...+.++. +++.+|++|+.||+|++||+.+ .+++..+..|...+.+++|+|++
T Consensus 207 D~~i~iWd~~~~~~-~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~---~~~~~~~~~~~~~~~~~~~~~~~ 282 (304)
T 2ynn_A 207 DLTIKIWDYQTKSC-VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST---YKVEKTLNVGLERSWCIATHPTG 282 (304)
T ss_dssp TSEEEEEETTTTEE-EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT---CCEEEEECCSSSSEEEEEECTTC
T ss_pred CCeEEEEeCCCCcc-ceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCC---CceeeeccCCCccEEEEEECCCC
Confidence 99999999987543 457788988887665 5688999999999999999998 67888899999999999999987
Q ss_pred CCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 423 DHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 423 ~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
... ++++|+.| .+.+|++...
T Consensus 283 ~~~-----------~~asg~~~-g~~~~~~~~~ 303 (304)
T 2ynn_A 283 RKN-----------YIASGFDN-GFTVLSLGND 303 (304)
T ss_dssp GGG-----------CEEEEETT-EEEEEECC--
T ss_pred Cce-----------EEEEecCC-ceEEEEeccC
Confidence 521 47777655 5778887653
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-43 Score=331.64 Aligned_cols=290 Identities=20% Similarity=0.247 Sum_probs=227.2
Q ss_pred eecccEEEEEe--cCCEEEEeeC------CCcEEEeeCCcc------ccccccCcccEEEEEEeCCCCEEEEEeCCCeEE
Q 012007 121 RKEGHIYSLAA--SGDLLYTGSD------SKNIRVWKNLKE------FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIR 186 (473)
Q Consensus 121 ~h~~~V~~~~~--~g~~l~tg~~------dg~i~vwd~~~~------~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~ 186 (473)
.|++.|.+++| ||++||+|+. |+.|++|+.... .....+|...|.+++|+|++. +++++.||.|+
T Consensus 40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~ 118 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVE 118 (357)
T ss_dssp CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEE
T ss_pred cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEE
Confidence 57888888765 6999999998 778999975422 233456889999999999984 56778999999
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD 266 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~ 266 (473)
|||+.+++...... ....+|...|.+++|+|++++|++|+.|+.|++||+++
T Consensus 119 lWd~~~~~~~~~~~----------------------------~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~ 170 (357)
T 4g56_B 119 LWEILEKESLLVNK----------------------------FAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ 170 (357)
T ss_dssp EC--------CCCC----------------------------EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred EeeccccceeEEEe----------------------------eccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 99998765432211 11224999999999999999999999999999999999
Q ss_pred CeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC-CCEEEEeC
Q 012007 267 CKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE-SAVVYCGS 343 (473)
Q Consensus 267 ~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~ 343 (473)
++++..+.+|...|.+++|++++ ++++++.||.|++||++.... ........+...+++++|+|+ +.+|++|+
T Consensus 171 ~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~----~~~~~~~~~~~~v~~v~~sp~~~~~la~g~ 246 (357)
T 4g56_B 171 KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP----ATRIDFCASDTIPTSVTWHPEKDDTFACGD 246 (357)
T ss_dssp TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC----BCBCCCTTCCSCEEEEEECTTSTTEEEEEE
T ss_pred CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce----eeeeeeccccccccchhhhhcccceEEEee
Confidence 99999999999999999999875 789999999999999975332 112234567788999999997 57899999
Q ss_pred CCCcEEEEecCCcccccceeecCcceEEEEEe--cC-CEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEec
Q 012007 344 SDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AG-NLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEE 420 (473)
Q Consensus 344 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~ 420 (473)
.|+.|++||+++... ...+.+|...|.++++ ++ ++|++|+.|++|+|||+++ .+++.. .+|.+.|++|+|+|
T Consensus 247 ~d~~i~~wd~~~~~~-~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~---~~~~~~-~~H~~~V~~vafsP 321 (357)
T 4g56_B 247 ETGNVSLVNIKNPDS-AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF---SEVFRD-LSHRDFVTGVAWSP 321 (357)
T ss_dssp SSSCEEEEESSCGGG-CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS---CEEEEE-CCCSSCEEEEEECS
T ss_pred cccceeEEECCCCcE-eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC---CcEeEE-CCCCCCEEEEEEeC
Confidence 999999999988644 4567789888887775 44 6899999999999999988 455544 48999999999998
Q ss_pred -CCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccC
Q 012007 421 -DRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKG 461 (473)
Q Consensus 421 -~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~ 461 (473)
++. +|+|||.||+|++|++....+....
T Consensus 322 ~d~~-------------~l~s~s~Dg~v~iW~~~~~~~~~~~ 350 (357)
T 4g56_B 322 LDHS-------------KFTTVGWDHKVLHHHLPSEGRTENL 350 (357)
T ss_dssp SSTT-------------EEEEEETTSCEEEEECC--------
T ss_pred CCCC-------------EEEEEcCCCeEEEEECCCCCccccc
Confidence 566 8999999999999999876554443
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=326.56 Aligned_cols=287 Identities=16% Similarity=0.268 Sum_probs=232.8
Q ss_pred cceeeeeeecccEEEEEe--------cCCEEEEeeCCCcEEEeeCCc---------cccccccCcccEEEEEEeCCCCEE
Q 012007 114 GLIGSIVRKEGHIYSLAA--------SGDLLYTGSDSKNIRVWKNLK---------EFSGFKSNSGLVKAIIISGDSNKI 176 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~--------~g~~l~tg~~dg~i~vwd~~~---------~~~~~~~h~~~V~~l~~s~~~~~l 176 (473)
.+...|.+|.+.|.++.+ ++++|++|+.|++|+|||+.. ....+.+|...|.+++|+|++.+|
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 456789999999999987 688999999999999999642 245678999999999999999999
Q ss_pred EEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC
Q 012007 177 FTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD 256 (473)
Q Consensus 177 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d 256 (473)
++|+.|+.|++||+.+++...... +|...|.+++|+|++++|++|+.|
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~--------------------------------~h~~~v~~v~~sp~~~~l~s~~~d 139 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFV--------------------------------GHQSEVYSVAFSPDNRQILSAGAE 139 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEE--------------------------------CCCSCEEEEEECSSTTEEEEEETT
T ss_pred EEEcCCCcEEEEECCCCcEEEEEc--------------------------------CCCCcEEEEEECCCCCEEEEEcCC
Confidence 999999999999998876543322 499999999999999999999999
Q ss_pred CCEEEEEcCCCeeeEEee---cCCCceeEEEEcCCC-----------EEEEEeCCCcEEEEeCcccCCCcceeeeeeecc
Q 012007 257 KTLKVWRISDCKCLESIN---AHDDAINSVVAGFDS-----------LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLK 322 (473)
Q Consensus 257 g~v~vwd~~~~~~~~~~~---~~~~~v~~l~~~~~~-----------~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 322 (473)
++|++||+.... ..... .|...|.++.|+|++ ++++++.||.|++||.. ......+..
T Consensus 140 ~~i~~wd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-------~~~~~~~~~ 211 (343)
T 2xzm_R 140 REIKLWNILGEC-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-------FQIRYTFKA 211 (343)
T ss_dssp SCEEEEESSSCE-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-------TEEEEEEEC
T ss_pred CEEEEEeccCCc-eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-------CceeEEEcC
Confidence 999999997433 33332 688999999999874 79999999999999953 123456778
Q ss_pred CCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccccee-ecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCcee
Q 012007 323 HENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVL-RGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHS 401 (473)
Q Consensus 323 ~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 401 (473)
|...|.+++|+|++++|++|+.||.|++||+.........+ .++.....++++++.+++++ .|+.|++|++.+....
T Consensus 212 h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~- 289 (343)
T 2xzm_R 212 HESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKA- 289 (343)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSC-
T ss_pred ccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCC-
Confidence 99999999999999999999999999999995433333333 23333334555678777655 5888999999874322
Q ss_pred EEEEec-----------CCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 402 CLAVLT-----------GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 402 ~~~~~~-----------~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
.+..+. +|...|++++|+|++. +|++|+.||.|++|++.++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-------------~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 290 PVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK-------------KLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC-------------CEEEEETTSEEEEEEEEEE
T ss_pred ceEEeecCcchhhhhhcCCCCceEEEEECCCCC-------------eEEEecCCceEEEEEEEcc
Confidence 122222 7888999999999998 7999999999999998754
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=321.47 Aligned_cols=286 Identities=24% Similarity=0.459 Sum_probs=245.8
Q ss_pred cceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEe
Q 012007 114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd 189 (473)
.+..++.+|.+.|.++.++ +++|++|+.||.|++|+.. +....+.+|...|.+++|+|++++|++|+.||.|++||
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence 4467888999999998865 8899999999999999965 45667888999999999999999999999999999999
Q ss_pred CCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee
Q 012007 190 VSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
+.+++...... +|...|.+++|+|++++|++|+.|+.|++||+++++.
T Consensus 94 ~~~~~~~~~~~--------------------------------~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 141 (312)
T 4ery_A 94 VSSGKCLKTLK--------------------------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 141 (312)
T ss_dssp TTTCCEEEEEE--------------------------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred CCCCcEEEEEc--------------------------------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE
Confidence 98876543322 4889999999999999999999999999999999999
Q ss_pred eEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcE
Q 012007 270 LESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLV 348 (473)
Q Consensus 270 ~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i 348 (473)
+..+..|...|.++.|++++ ++++++.||.|++||++.. .........+...+..++|+|++++|++++.||.|
T Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 216 (312)
T 4ery_A 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 216 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-----CEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEE
T ss_pred EEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----ceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeE
Confidence 99999999999999999987 8999999999999999732 22333445677789999999999999999999999
Q ss_pred EEEecCCcccccceeecCcceE----EEEE-ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 349 NFWECEKHLSHGGVLRGHKMAV----LCLA-AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 349 ~iwd~~~~~~~~~~~~~~~~~v----~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
++||+++.... ..+.+|.... ..+. .++.+|++|+.||.|++||+.+ ...+..+.+|...|.+++|+|++.
T Consensus 217 ~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~---~~~~~~~~~h~~~v~~~~~~p~~~ 292 (312)
T 4ery_A 217 KLWDYSKGKCL-KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT---KEIVQKLQGHTDVVISTACHPTEN 292 (312)
T ss_dssp EEEETTTTEEE-EEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT---CCEEEEECCCSSCEEEEEECSSSS
T ss_pred EEEECCCCcEE-EEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC---chhhhhhhccCCcEEEEeecCcCC
Confidence 99999876443 3455555432 2333 4588999999999999999988 577889999999999999999998
Q ss_pred CCcccccCCCccEEEEEee--CCCcEEEEEcC
Q 012007 424 HDHEYHQKGDQRWTVYSGS--LDKSVKVWRVS 453 (473)
Q Consensus 424 ~~~~~~~~~~~~~~l~s~s--~Dg~v~iW~i~ 453 (473)
+|++++ .|++|++|+..
T Consensus 293 -------------~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 293 -------------IIASAALENDKTIKLWKSD 311 (312)
T ss_dssp -------------EEEEEECTTTCCEEEEECC
T ss_pred -------------ceEEEEccCCccEEEecCC
Confidence 888887 69999999964
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=339.16 Aligned_cols=295 Identities=19% Similarity=0.367 Sum_probs=243.7
Q ss_pred ceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
...+|.+|.+.|+++.++ +++|++|+.||+|+|||.. +....+..|...|.+++|+|++++|++|+.|+.|++|++
T Consensus 58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~ 137 (380)
T 3iz6_a 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL 137 (380)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence 467899999999998864 8899999999999999965 456678899999999999999999999999999999999
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC-CCEEEEEeCCCCEEEEEcCCCee
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
.+....... . .......+|...|.++.|.|+ +..|++|+.|++|++||+++++.
T Consensus 138 ~~~~~~~~~----~---------------------~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~ 192 (380)
T 3iz6_a 138 SSQADRDGN----M---------------------PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR 192 (380)
T ss_dssp CCCSSCCCS----S---------------------TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE
T ss_pred CCCccccCC----c---------------------cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE
Confidence 764311000 0 000122359999999999996 45799999999999999999998
Q ss_pred eEEe-----ecCCCceeEEEEcC-CC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe
Q 012007 270 LESI-----NAHDDAINSVVAGF-DS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG 342 (473)
Q Consensus 270 ~~~~-----~~~~~~v~~l~~~~-~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~ 342 (473)
+..+ .+|...|.++.+.+ ++ +|++|+.|+.|++||++.. ......+.+|...|.+++|+|++.+|+++
T Consensus 193 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~-----~~~~~~~~~h~~~v~~v~~~p~~~~l~s~ 267 (380)
T 3iz6_a 193 ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT-----SRAVRTYHGHEGDINSVKFFPDGQRFGTG 267 (380)
T ss_dssp EEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT-----CCCCEEECCCSSCCCEEEECTTSSEEEEE
T ss_pred EEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC-----CcceEEECCcCCCeEEEEEecCCCeEEEE
Confidence 8877 57889999999976 43 8999999999999999732 23456778899999999999999999999
Q ss_pred CCCCcEEEEecCCcccccceeecC-------c--ceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEe----cCC
Q 012007 343 SSDGLVNFWECEKHLSHGGVLRGH-------K--MAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVL----TGH 409 (473)
Q Consensus 343 ~~dg~i~iwd~~~~~~~~~~~~~~-------~--~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~h 409 (473)
+.||.|++||++++.... .+..+ . ....+++++|++|++|+.||.|++||+..+ +.+..+ .+|
T Consensus 268 s~D~~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~---~~~~~~~~~~~~h 343 (380)
T 3iz6_a 268 SDDGTCRLFDMRTGHQLQ-VYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA---EMVLNLGTLQNSH 343 (380)
T ss_dssp CSSSCEEEEETTTTEEEE-EECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC---CEEEEECCSCSSC
T ss_pred cCCCeEEEEECCCCcEEE-EecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC---ceEEEEecccCCC
Confidence 999999999998765432 22211 1 234667788999999999999999999873 444444 689
Q ss_pred CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 410 TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 410 ~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
.+.|++++|+|++. +|++|+.||+|+||++....
T Consensus 344 ~~~v~~l~~s~dg~-------------~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 344 EGRISCLGLSSDGS-------------ALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CCCCCEEEECSSSS-------------EEEEECTTSCEEEEECCSSS
T ss_pred CCceEEEEECCCCC-------------EEEEeeCCCCEEEEecCCCc
Confidence 99999999999998 89999999999999998654
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=314.65 Aligned_cols=252 Identities=23% Similarity=0.329 Sum_probs=222.1
Q ss_pred cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEe
Q 012007 153 EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKI 232 (473)
Q Consensus 153 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (473)
....+.+|.+.|.+++|+|++++|++|+.||.|++||+.++.......
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~-------------------------------- 52 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ-------------------------------- 52 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE--------------------------------
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee--------------------------------
Confidence 355788999999999999999999999999999999998876443322
Q ss_pred eccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCC
Q 012007 233 RHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 233 ~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
.|...|.+++|++++++|++|+.|++|++||+.+++++..+.+|...|.+++|+|++ +|++|+.|+.|++||++.
T Consensus 53 ~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~---- 128 (304)
T 2ynn_A 53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN---- 128 (304)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGG----
T ss_pred ccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCC----
Confidence 388899999999999999999999999999999999999999999999999999998 899999999999999973
Q ss_pred cceeeeeeeccCCccEEEEEEcc-CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe----cCCEEEEEeCC
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA----AGNLVFSGSAD 386 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~s~~~d 386 (473)
.......+.+|...|.+++|+| ++.+|++|+.|+.|++||++..........+|...+..+.+ ++.+|++|+.|
T Consensus 129 -~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D 207 (304)
T 2ynn_A 129 -NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207 (304)
T ss_dssp -TTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETT
T ss_pred -CcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCC
Confidence 3344567789999999999999 67899999999999999998765554455566666655553 57899999999
Q ss_pred CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 387 RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 387 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
++|++||+++ ..++..+.+|...|.+++|+|++. +|++|+.||+|++||+.+++.
T Consensus 208 ~~i~iWd~~~---~~~~~~~~~h~~~v~~~~~~p~~~-------------~l~s~s~Dg~i~iWd~~~~~~ 262 (304)
T 2ynn_A 208 LTIKIWDYQT---KSCVATLEGHMSNVSFAVFHPTLP-------------IIISGSEDGTLKIWNSSTYKV 262 (304)
T ss_dssp SEEEEEETTT---TEEEEEEECCSSCEEEEEECSSSS-------------EEEEEETTSCEEEEETTTCCE
T ss_pred CeEEEEeCCC---CccceeeCCCCCCEEEEEECCCCC-------------EEEEEcCCCeEEEEECCCCce
Confidence 9999999998 578899999999999999999998 899999999999999987653
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-41 Score=340.13 Aligned_cols=303 Identities=19% Similarity=0.268 Sum_probs=239.4
Q ss_pred ceeeeeeecccEEEEEec--CC-EEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEe
Q 012007 115 LIGSIVRKEGHIYSLAAS--GD-LLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~~--g~-~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd 189 (473)
....+.+|.+.|.+++|+ +. +|++|+.|++|++||.. +....+.+|...|.+++|+|++++|++|+.|++|++||
T Consensus 139 ~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd 218 (611)
T 1nr0_A 139 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN 218 (611)
T ss_dssp BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEE
Confidence 345688999999998876 44 69999999999999965 44567889999999999999999999999999999999
Q ss_pred CCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee
Q 012007 190 VSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
+.+++......... ....+|.+.|.+++|+|++++|++++.|++|++||+.++++
T Consensus 219 ~~~g~~~~~~~~~~-------------------------~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~ 273 (611)
T 1nr0_A 219 GVDGTKTGVFEDDS-------------------------LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV 273 (611)
T ss_dssp TTTCCEEEECBCTT-------------------------SSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred CCCCcEeeeecccc-------------------------ccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce
Confidence 98876543321100 00114999999999999999999999999999999988765
Q ss_pred eEE-------------------------------------------eecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeC
Q 012007 270 LES-------------------------------------------INAHDDAINSVVAGFDS-LVFTGSADGTVKVWRR 305 (473)
Q Consensus 270 ~~~-------------------------------------------~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~ 305 (473)
+.. +.+|...|.+++|+|++ +|++++.|+.|++||+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~ 353 (611)
T 1nr0_A 274 EKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI 353 (611)
T ss_dssp EEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Confidence 543 34788999999999998 8999999999999998
Q ss_pred cccCCCcce-----------------ee-----------------------------------e----------------
Q 012007 306 ELQGKGTKH-----------------CL-----------------------------------A---------------- 317 (473)
Q Consensus 306 ~~~~~~~~~-----------------~~-----------------------------------~---------------- 317 (473)
..+...... .+ .
T Consensus 354 ~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~ 433 (611)
T 1nr0_A 354 STGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH 433 (611)
T ss_dssp TTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSE
T ss_pred CCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCce
Confidence 643210000 00 0
Q ss_pred --------eeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCC
Q 012007 318 --------QVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADR 387 (473)
Q Consensus 318 --------~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg 387 (473)
.....|...+.+++|+|++++|++|+.|+.|++||+...........+|...|.+++ ++|++|++++.|+
T Consensus 434 v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~ 513 (611)
T 1nr0_A 434 IAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR 513 (611)
T ss_dssp EEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCC
Confidence 000123456889999999999999999999999999764322112257887776655 5799999999999
Q ss_pred cEEEEecCCCCceeEEEE--ecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 388 NICLWRREESGAHSCLAV--LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~--~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
+|++|++.+.. +++.. +.+|...|++++|+|+++ +|++|+.|++|++|++..+..
T Consensus 514 ~v~~w~~~~~~--~~~~~~~~~~H~~~V~~v~fspdg~-------------~lasgs~D~~v~lW~~~~~~~ 570 (611)
T 1nr0_A 514 KVIPYSVANNF--ELAHTNSWTFHTAKVACVSWSPDNV-------------RLATGSLDNSVIVWNMNKPSD 570 (611)
T ss_dssp CEEEEEGGGTT--EESCCCCCCCCSSCEEEEEECTTSS-------------EEEEEETTSCEEEEETTCTTS
T ss_pred CEEEEEcCCCC--ceeeeeeeeecccceeEEEECCCCC-------------EEEEEECCCcEEEEECCCccc
Confidence 99999998621 23332 345999999999999998 899999999999999987653
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-40 Score=311.51 Aligned_cols=287 Identities=21% Similarity=0.374 Sum_probs=234.1
Q ss_pred cceeeeeeecccEEEEEec---CCEEEEeeCCCcEEEeeCCc-------cccccccCcccEEEEEEeCCCCEEEEEeCCC
Q 012007 114 GLIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLK-------EFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~---g~~l~tg~~dg~i~vwd~~~-------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 183 (473)
.+..+|.||.+.|++++++ +++||||+.||+|+|||+.. ....+.+|...|.+++|+|++++|++|+.|+
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 4577899999999999975 57999999999999999642 2456788999999999999999999999999
Q ss_pred eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEE
Q 012007 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWR 263 (473)
Q Consensus 184 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd 263 (473)
.|++|+........... .+...+..+.+++++.+|++|+.|+.+++||
T Consensus 109 ~i~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d 156 (340)
T 4aow_A 109 TLRLWDLTTGTTTRRFV--------------------------------GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156 (340)
T ss_dssp EEEEEETTTTEEEEEEE--------------------------------CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cceEEeecccceeeeec--------------------------------CCCCceeEEEEeecCccceeecCCCeEEEEE
Confidence 99999998775443332 2677888999999999999999999999999
Q ss_pred cCCCeee-EEeecCCCceeEEEEcCCC---EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEE
Q 012007 264 ISDCKCL-ESINAHDDAINSVVAGFDS---LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVV 339 (473)
Q Consensus 264 ~~~~~~~-~~~~~~~~~v~~l~~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l 339 (473)
+...... .....|...+.++.+++++ ++++++.|+.|++||++. ......+.+|...|++++|+|++++|
T Consensus 157 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~------~~~~~~~~~h~~~v~~~~~s~~~~~l 230 (340)
T 4aow_A 157 TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN------CKLKTNHIGHTGYLNTVTVSPDGSLC 230 (340)
T ss_dssp TTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT------TEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred eCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC------CceeeEecCCCCcEEEEEECCCCCEE
Confidence 9766543 4456789999999998764 788999999999999963 23456678899999999999999999
Q ss_pred EEeCCCCcEEEEecCCcccccceeecCcceEEEEEec-CCEEEEEeCCCcEEEEecCCCCceeEEE---------EecCC
Q 012007 340 YCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA-GNLVFSGSADRNICLWRREESGAHSCLA---------VLTGH 409 (473)
Q Consensus 340 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------~~~~h 409 (473)
++++.||.|++||+++..... .+.. ...+.++.+. +.++++++.|+.|++||+++. ..+. ...+|
T Consensus 231 ~s~s~Dg~i~iwd~~~~~~~~-~~~~-~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~h 305 (340)
T 4aow_A 231 ASGGKDGQAMLWDLNEGKHLY-TLDG-GDIINALCFSPNRYWLCAATGPSIKIWDLEGK---IIVDELKQEVISTSSKAE 305 (340)
T ss_dssp EEEETTCEEEEEETTTTEEEE-EEEC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTT---EEEEEECCC-------CC
T ss_pred EEEeCCCeEEEEEeccCceee-eecC-CceEEeeecCCCCceeeccCCCEEEEEECCCC---eEEEeccccceeeeccCC
Confidence 999999999999999865543 3333 3345555443 335566667999999999873 3333 33478
Q ss_pred CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 410 TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 410 ~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
...|++++|+|+++ +|++|+.||.|+|||+.++.
T Consensus 306 ~~~v~~l~~s~dg~-------------~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 306 PPQCTSLAWSADGQ-------------TLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CCCEEEEEECTTSS-------------EEEEEETTSCEEEEEEEC--
T ss_pred CCCEEEEEECCCCC-------------EEEEEeCCCEEEEEeCCCcC
Confidence 89999999999998 89999999999999999875
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-40 Score=317.79 Aligned_cols=294 Identities=23% Similarity=0.397 Sum_probs=230.5
Q ss_pred eeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCCc--cccccccCc------------------ccEEEEEEeCCCCEE
Q 012007 119 IVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK--EFSGFKSNS------------------GLVKAIIISGDSNKI 176 (473)
Q Consensus 119 l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~--~~~~~~~h~------------------~~V~~l~~s~~~~~l 176 (473)
..+|.+.|.++.+ +|++||+|+ |+.++||+... .+..+..|. ..|.+++|+|++++|
T Consensus 60 ~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 60 SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred ecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 3479999988776 588999987 68999998652 333333332 249999999999999
Q ss_pred EEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC
Q 012007 177 FTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD 256 (473)
Q Consensus 177 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d 256 (473)
++|+.||.|++||+.+++..... .+|...|.+++|+|++++|++|+.|
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~~~~--------------------------------~~h~~~v~~~~~~p~~~~l~s~s~d 186 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIVMIL--------------------------------QGHEQDIYSLDYFPSGDKLVSGSGD 186 (393)
T ss_dssp EEEETTSCEEEEETTTTEEEEEE--------------------------------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEcCCCeEEEEECCCCcEEEEE--------------------------------ccCCCCEEEEEEcCCCCEEEEecCC
Confidence 99999999999999877543322 1499999999999999999999999
Q ss_pred CCEEEEEcCCCeeeEEeecCCCceeEEEEcC-CC-EEEEEeCCCcEEEEeCcccCCCcce-eeeeeeccCCccEEEEEEc
Q 012007 257 KTLKVWRISDCKCLESINAHDDAINSVVAGF-DS-LVFTGSADGTVKVWRRELQGKGTKH-CLAQVLLKHENAVTALAVN 333 (473)
Q Consensus 257 g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~v~~l~~~ 333 (473)
++|++||++++++...+. +...+.+++++| ++ +|++|+.||.|++||++.+...... .......+|...|.+++|+
T Consensus 187 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~ 265 (393)
T 1erj_A 187 RTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT 265 (393)
T ss_dssp SEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC
T ss_pred CcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEEC
Confidence 999999999999888876 566799999998 55 8999999999999998743210000 0011225789999999999
Q ss_pred cCCCEEEEeCCCCcEEEEecCCccc-----------ccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCce
Q 012007 334 QESAVVYCGSSDGLVNFWECEKHLS-----------HGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREESGAH 400 (473)
Q Consensus 334 ~~~~~l~~~~~dg~i~iwd~~~~~~-----------~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~ 400 (473)
|++++|++++.|+.|++||+++... ....+.+|...|.++.+ ++.+|++|+.|+.|++||+.+ .
T Consensus 266 ~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~---~ 342 (393)
T 1erj_A 266 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS---G 342 (393)
T ss_dssp TTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT---C
T ss_pred CCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC---C
Confidence 9999999999999999999975321 22356688888877665 689999999999999999988 5
Q ss_pred eEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 401 SCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 401 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
.++..+.+|...|.+++|++... ......+|++|+.||+|+||++....
T Consensus 343 ~~~~~l~~h~~~v~~v~~~~~~~-------~~p~~~~l~sgs~Dg~i~iW~~~~~~ 391 (393)
T 1erj_A 343 NPLLMLQGHRNSVISVAVANGSS-------LGPEYNVFATGSGDCKARIWKYKKIA 391 (393)
T ss_dssp CEEEEEECCSSCEEEEEECSSCT-------TCTTCEEEEEEETTSEEEEEEEEEC-
T ss_pred eEEEEECCCCCCEEEEEecCCcC-------cCCCCCEEEEECCCCcEEECcccccC
Confidence 67888899999999999987432 11111189999999999999987654
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-40 Score=333.11 Aligned_cols=287 Identities=18% Similarity=0.228 Sum_probs=241.5
Q ss_pred cceeeeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCCc----cccccccCcccEEEEEEeCCCCEEEEEeCC----C
Q 012007 114 GLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK----EFSGFKSNSGLVKAIIISGDSNKIFTGHQD----G 183 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~----~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d----g 183 (473)
.....+.+|.+.|.++++ +|++||+|+.||+|+|||... ....+.+|.+.|.+++|+|++++|++++.+ +
T Consensus 50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~ 129 (611)
T 1nr0_A 50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG 129 (611)
T ss_dssp SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCcee
Confidence 356678899999988775 589999999999999999742 234677899999999999999999998875 4
Q ss_pred eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCC-EEEEEeCCCCEEEE
Q 012007 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQG-LLYSGSWDKTLKVW 262 (473)
Q Consensus 184 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~s~s~dg~v~vw 262 (473)
.|++||... .... +.+|...|.+++|+|++. .|++|+.|++|++|
T Consensus 130 ~v~~wd~~~--~~~~--------------------------------l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lw 175 (611)
T 1nr0_A 130 HVFLFDTGT--SNGN--------------------------------LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIF 175 (611)
T ss_dssp EEEETTTCC--BCBC--------------------------------CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEE
T ss_pred EEEEeeCCC--Ccce--------------------------------ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEE
Confidence 788888532 1111 114999999999999987 69999999999999
Q ss_pred EcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeee-------ccCCccEEEEEEcc
Q 012007 263 RISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVL-------LKHENAVTALAVNQ 334 (473)
Q Consensus 263 d~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~v~~l~~~~ 334 (473)
|..+++++..+.+|...|.+++|+|++ +|++++.|+.|++||+..+.. ...+ .+|...|.+++|+|
T Consensus 176 d~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~------~~~~~~~~~~~~~h~~~V~~v~~sp 249 (611)
T 1nr0_A 176 EGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK------TGVFEDDSLKNVAHSGSVFGLTWSP 249 (611)
T ss_dssp ETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE------EEECBCTTSSSCSSSSCEEEEEECT
T ss_pred ECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE------eeeeccccccccccCCCEEEEEECC
Confidence 999999999999999999999999998 899999999999999864321 1222 27999999999999
Q ss_pred CCCEEEEeCCCCcEEEEecCCcccccceee--cCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCc
Q 012007 335 ESAVVYCGSSDGLVNFWECEKHLSHGGVLR--GHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGP 412 (473)
Q Consensus 335 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 412 (473)
++++|++++.|++|++||++++........ .+......+.+++..+++++.|+.|++|+... ..+...+.+|...
T Consensus 250 dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~---~~~~~~~~gh~~~ 326 (611)
T 1nr0_A 250 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPEL---GSIDQVRYGHNKA 326 (611)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTT---TEEEEEECCCSSC
T ss_pred CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCC---CCcceEEcCCCCC
Confidence 999999999999999999987654432221 23445677778999999999999999999887 4577788999999
Q ss_pred eeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 413 VKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 413 V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
|++++|+|+++ +|++++.|++|++||+..+.
T Consensus 327 v~~l~~spdg~-------------~l~s~s~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 327 ITALSSSADGK-------------TLFSADAEGHINSWDISTGI 357 (611)
T ss_dssp EEEEEECTTSS-------------EEEEEETTSCEEEEETTTCC
T ss_pred EEEEEEeCCCC-------------EEEEEeCCCcEEEEECCCCc
Confidence 99999999998 89999999999999998764
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=309.34 Aligned_cols=293 Identities=13% Similarity=0.204 Sum_probs=248.5
Q ss_pred ccccceeeeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEE
Q 012007 111 SCNGLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIR 186 (473)
Q Consensus 111 ~~~~~~~~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~ 186 (473)
........+.+|.+.|.++++ ++++|++|+.||.|+|||.. +.+..+.+|.+.|.+++|+|++++|++++.||.|+
T Consensus 20 G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 20 GSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK 99 (369)
T ss_dssp CCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred ccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 334446678999999999887 48899999999999999965 56677889999999999999999999999999999
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC-----CCEEE
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD-----KTLKV 261 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d-----g~v~v 261 (473)
+||+.+++...... +...|.+++|+|++++|++++.+ +.|++
T Consensus 100 iwd~~~~~~~~~~~---------------------------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~ 146 (369)
T 3zwl_B 100 LWDVSNGQCVATWK---------------------------------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINI 146 (369)
T ss_dssp EEETTTCCEEEEEE---------------------------------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEE
T ss_pred EEECCCCcEEEEee---------------------------------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEE
Confidence 99999876544332 77889999999999999999999 99999
Q ss_pred EEcCCCe-----------eeEEeecCCC--ceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccE
Q 012007 262 WRISDCK-----------CLESINAHDD--AINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAV 327 (473)
Q Consensus 262 wd~~~~~-----------~~~~~~~~~~--~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v 327 (473)
||+.... .+..+..|.. .+.+++|++++ .+++++.||.|++||++. .......+..|...|
T Consensus 147 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~v 221 (369)
T 3zwl_B 147 YEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN-----NYEYVDSIDLHEKSI 221 (369)
T ss_dssp EEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT-----TTEEEEEEECCSSCE
T ss_pred EEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC-----CcEeEEEEecCCCce
Confidence 9997653 3445556666 89999999987 899999999999999973 234556777899999
Q ss_pred EEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCC--------------cEEEEe
Q 012007 328 TALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADR--------------NICLWR 393 (473)
Q Consensus 328 ~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg--------------~i~iwd 393 (473)
.+++|+|++.+|++++.||.|++||+++................+++++++++++++.++ .+++||
T Consensus 222 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d 301 (369)
T 3zwl_B 222 SDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYH 301 (369)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEE
T ss_pred eEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEe
Confidence 999999999999999999999999998865554333333334455667899999999988 899999
Q ss_pred cCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 394 REESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 394 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
+.+ ...+..+.+|...|++++|+|++. +|++++.||.|++|++..+..
T Consensus 302 ~~~---~~~~~~~~~~~~~v~~~~~s~~~~-------------~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 302 KIF---EEEIGRVQGHFGPLNTVAISPQGT-------------SYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp TTT---CCEEEEEECCSSCEEEEEECTTSS-------------EEEEEETTSEEEEEEECHHHH
T ss_pred cCC---CcchhheecccCcEEEEEECCCCC-------------EEEEEcCCCeEEEEECccccc
Confidence 988 577888899999999999999998 899999999999999987543
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-39 Score=332.74 Aligned_cols=285 Identities=22% Similarity=0.388 Sum_probs=230.8
Q ss_pred ceeeeeeecccEEEEEec---CCEEEEeeCCCcEEEeeCCc-------cccccccCcccEEEEEEeCCCCEEEEEeCCCe
Q 012007 115 LIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLK-------EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGK 184 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~~---g~~l~tg~~dg~i~vwd~~~-------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~ 184 (473)
+.+.+.+|.+.|.+++++ +++|++|+.||+|+|||+.. ....+.+|...|.+++|+|++++|++|+.||.
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 456789999999999975 57999999999999998653 23467889999999999999999999999999
Q ss_pred EEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEc
Q 012007 185 IRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264 (473)
Q Consensus 185 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~ 264 (473)
|+|||+.++...... .+|...|.+++|+|++++|++|+.|++|++||+
T Consensus 454 v~vwd~~~~~~~~~~--------------------------------~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~ 501 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRF--------------------------------VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT 501 (694)
T ss_dssp EEEEETTTTEEEEEE--------------------------------ECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred EEEEECCCCcceeEE--------------------------------eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEC
Confidence 999999887543322 249999999999999999999999999999998
Q ss_pred CCCeeeEEe---ecCCCceeEEEEcCCC---EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCE
Q 012007 265 SDCKCLESI---NAHDDAINSVVAGFDS---LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAV 338 (473)
Q Consensus 265 ~~~~~~~~~---~~~~~~v~~l~~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 338 (473)
......... .+|...|.+++|+|++ .+++++.|+.|++||++.. .....+.+|...|++++|+|++++
T Consensus 502 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~------~~~~~~~~h~~~v~~v~~spdg~~ 575 (694)
T 3dm0_A 502 LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC------KLRSTLAGHTGYVSTVAVSPDGSL 575 (694)
T ss_dssp TSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECTTSSE
T ss_pred CCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC------cEEEEEcCCCCCEEEEEEeCCCCE
Confidence 655443322 4688899999999985 7999999999999999632 245667889999999999999999
Q ss_pred EEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCC---------
Q 012007 339 VYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGH--------- 409 (473)
Q Consensus 339 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h--------- 409 (473)
|++++.||.|++||++++...............++++++.+|++++ |+.|+|||+.+ ...+..+..+
T Consensus 576 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~ 651 (694)
T 3dm0_A 576 CASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLES---KSIVEDLKVDLKAEAEKAD 651 (694)
T ss_dssp EEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTT---TEEEEEECCCCC-------
T ss_pred EEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCC---CCChhhhcccccccccccc
Confidence 9999999999999998865543332222233345566777777766 66799999998 3444444322
Q ss_pred ----------CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 410 ----------TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 410 ----------~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
...|++++|+|++. +|++|+.||+|+||++..
T Consensus 652 ~~~~~~~~~~~~~~~~l~~spdg~-------------~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 652 NSGPAATKRKVIYCTSLNWSADGS-------------TLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp ---------CCCCEEEEEECTTSS-------------EEEEEETTSEEEEEEC--
T ss_pred ccccccCCceeEEeeeEEEcCCCC-------------EEEEEcCCCeEEEEeccC
Confidence 12378999999999 899999999999999863
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-39 Score=324.30 Aligned_cols=278 Identities=26% Similarity=0.445 Sum_probs=242.0
Q ss_pred cceeeeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 114 GLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
..+..+.+|.+.|.++++ ++++|++++.||.|++||.. ..+..+.+|...|.+++|+|++++|++|+.||.|++||.
T Consensus 294 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~ 373 (577)
T 2ymu_A 294 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 373 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC
Confidence 345678889999988776 58899999999999999965 456678889999999999999999999999999999996
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL 270 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~ 270 (473)
... ..... .+|...|.+++|+|++++|++++.|+.|++||. +++.+
T Consensus 374 ~~~-~~~~~--------------------------------~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~ 419 (577)
T 2ymu_A 374 NGQ-LLQTL--------------------------------TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLL 419 (577)
T ss_dssp TCC-EEEEE--------------------------------ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEE
T ss_pred CCC-EEEEe--------------------------------cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEE
Confidence 432 22111 148899999999999999999999999999995 67888
Q ss_pred EEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEE
Q 012007 271 ESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVN 349 (473)
Q Consensus 271 ~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~ 349 (473)
..+..|...|.+++|+|++ +|++++.|+.|++||... .....+.+|...|++++|+|++++|++++.|+.|+
T Consensus 420 ~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-------~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~ 492 (577)
T 2ymu_A 420 QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 492 (577)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-------CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred EEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-------CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEE
Confidence 8999999999999999988 899999999999999641 23456778999999999999999999999999999
Q ss_pred EEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcc
Q 012007 350 FWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHE 427 (473)
Q Consensus 350 iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~ 427 (473)
+||... .....+.+|...|.+++ +++++|++++.||.|++||.. .+++..+.+|.+.|++++|+|+++
T Consensus 493 iw~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~----~~~~~~~~~h~~~v~~~~fs~dg~---- 562 (577)
T 2ymu_A 493 LWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN----GQLLQTLTGHSSSVWGVAFSPDGQ---- 562 (577)
T ss_dssp EEETTS--CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT----SCEEEEEECCSSCEEEEEECTTSS----
T ss_pred EEcCCC--CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC----CCEEEEEcCCCCCEEEEEEcCCCC----
Confidence 999653 33457788998887765 579999999999999999964 367888999999999999999998
Q ss_pred cccCCCccEEEEEeeCCCcEEEEE
Q 012007 428 YHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 428 ~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
+|+|++.|++|++||
T Consensus 563 ---------~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 563 ---------TIASASSDKTVKLWN 577 (577)
T ss_dssp ---------CEEEEETTSCEEEEC
T ss_pred ---------EEEEEeCCCEEEEeC
Confidence 799999999999997
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=311.38 Aligned_cols=302 Identities=14% Similarity=0.158 Sum_probs=242.1
Q ss_pred cceeeeeeecccEEEEEecCCEEEEeeCCCcEEEeeCCc--------cccccccCcccEEEEEEeCC----C---CEEEE
Q 012007 114 GLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLK--------EFSGFKSNSGLVKAIIISGD----S---NKIFT 178 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~g~~l~tg~~dg~i~vwd~~~--------~~~~~~~h~~~V~~l~~s~~----~---~~l~s 178 (473)
.....+.+|.+.|.++++++++|++|+.||.|+|||... .+..+.+|...|.+++|+++ + ++|++
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s 86 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 86 (397)
T ss_dssp EEEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE
Confidence 345678899999999999999999999999999998652 36677889999999999999 9 99999
Q ss_pred EeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeec-----cCCeeEEEEc----CCCCE
Q 012007 179 GHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRH-----YDAVSCLSLN----AEQGL 249 (473)
Q Consensus 179 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~l~~~----~~~~~ 249 (473)
++.||.|++||+.+++....... .....| ...|.+++|+ |++++
T Consensus 87 ~~~dg~i~iw~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 139 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDETKKVIF---------------------------EKLDLLDSDMKKHSFWALKWGASNDRLLSH 139 (397)
T ss_dssp EETTSCEEEEEEEECTTTCCEEE---------------------------EEECCSCTTGGGSCEEEEEEECCC----CE
T ss_pred EcCCCCEEEEEccCCcccccccc---------------------------eeecccccccCCCcEEEEEEeeccCCCCce
Confidence 99999999999987653100000 001125 5899999999 99999
Q ss_pred -EEEEeCCCCEEEEEcCC------CeeeE-----Ee-------ecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCC
Q 012007 250 -LYSGSWDKTLKVWRISD------CKCLE-----SI-------NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGK 310 (473)
Q Consensus 250 -l~s~s~dg~v~vwd~~~------~~~~~-----~~-------~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~ 310 (473)
|++++.||.|++||+.+ ++.+. .+ ..|...|.+++|++++++++++.||.|++||++..
T Consensus 140 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~-- 217 (397)
T 1sq9_A 140 RLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTL-- 217 (397)
T ss_dssp EEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTT--
T ss_pred EEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCC--
Confidence 99999999999999998 66666 66 44889999999999888889999999999999732
Q ss_pred Ccceeeeeeecc---C---CccEEEEEEccCCCEEEEeCCC---CcEEEEecCCcccccceeec-------------Ccc
Q 012007 311 GTKHCLAQVLLK---H---ENAVTALAVNQESAVVYCGSSD---GLVNFWECEKHLSHGGVLRG-------------HKM 368 (473)
Q Consensus 311 ~~~~~~~~~~~~---~---~~~v~~l~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~-------------~~~ 368 (473)
.....+.. | ...|.+++|+|++.+|++++.| |.|++||+++.... ..+.+ |..
T Consensus 218 ----~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 292 (397)
T 1sq9_A 218 ----RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI-GSLSVPTHSSQASLGEFAHSS 292 (397)
T ss_dssp ----EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEE-EEECBC--------CCBSBSS
T ss_pred ----ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCccc-ceeccCcccccccccccccCC
Confidence 23455556 8 8999999999999999999999 99999999876443 45555 888
Q ss_pred eEEEEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEec------CC---------------CCceeEEEEecCCCCC
Q 012007 369 AVLCLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLT------GH---------------TGPVKCLAVEEDRDHD 425 (473)
Q Consensus 369 ~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~h---------------~~~V~~l~~~~~~~~~ 425 (473)
.+.++.+ ++++|++++.||.|++||+.+ .+++..+. +| ...|++++|+|++...
T Consensus 293 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~ 369 (397)
T 1sq9_A 293 WVMSLSFNDSGETLCSAGWDGKLRFWDVKT---KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRS 369 (397)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTT---TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSB
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEcCC---CceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccc
Confidence 8877665 599999999999999999988 56777777 77 9999999999997200
Q ss_pred cccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 426 HEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 426 ~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
.. ......+|++++.||.|++|++..+
T Consensus 370 ~~---~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 370 GM---GADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp ST---TCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred cc---cccccceEEEecCCCcEEEEEcCCC
Confidence 00 0000008999999999999999875
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-39 Score=311.14 Aligned_cols=258 Identities=24% Similarity=0.411 Sum_probs=226.5
Q ss_pred EEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEe
Q 012007 146 RVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVR 224 (473)
Q Consensus 146 ~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (473)
..|... .....+.+|.++|++++|+|++++|++|+.||.|++||+.+++......
T Consensus 92 ~~~~~~~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~------------------------ 147 (410)
T 1vyh_C 92 KEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK------------------------ 147 (410)
T ss_dssp CCCCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC------------------------
T ss_pred cccccCCCceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe------------------------
Confidence 345433 2345678999999999999999999999999999999999876543322
Q ss_pred ecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEE
Q 012007 225 RNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVW 303 (473)
Q Consensus 225 ~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vw 303 (473)
+|.+.|.+++|+|++++|++|+.|++|++||+.+++++..+.+|...|.+++|+|++ +|++|+.|+.|++|
T Consensus 148 --------~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~w 219 (410)
T 1vyh_C 148 --------GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 219 (410)
T ss_dssp --------CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred --------ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 499999999999999999999999999999999999999999999999999999987 89999999999999
Q ss_pred eCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEec-------
Q 012007 304 RRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA------- 376 (473)
Q Consensus 304 d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~------- 376 (473)
|++.+. ....+.+|...|.++.++|++.+|++++.|+.|++||+++... ...+.+|...+.++.+.
T Consensus 220 d~~~~~------~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~ 292 (410)
T 1vyh_C 220 EVQTGY------CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC-KAELREHRHVVECISWAPESSYSS 292 (410)
T ss_dssp ETTTCC------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECCSCGGGG
T ss_pred ECCCCc------EEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCce-eeEecCCCceEEEEEEcCcccccc
Confidence 997432 3456788999999999999999999999999999999987543 35677888888887764
Q ss_pred ---------------CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEe
Q 012007 377 ---------------GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG 441 (473)
Q Consensus 377 ---------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~ 441 (473)
+.+|++|+.|+.|++||+.+ ..++..+.+|...|++++|+|++. +|++|
T Consensus 293 ~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~---~~~~~~~~~h~~~v~~v~~~~~g~-------------~l~s~ 356 (410)
T 1vyh_C 293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST---GMCLMTLVGHDNWVRGVLFHSGGK-------------FILSC 356 (410)
T ss_dssp GGGCCSCC-------CCEEEEEETTSEEEEEETTT---TEEEEEEECCSSCEEEEEECSSSS-------------CEEEE
T ss_pred hhhhccccccccCCCCCEEEEEeCCCeEEEEECCC---CceEEEEECCCCcEEEEEEcCCCC-------------EEEEE
Confidence 56999999999999999998 578888999999999999999998 89999
Q ss_pred eCCCcEEEEEcCCCCCC
Q 012007 442 SLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 442 s~Dg~v~iW~i~~~~~~ 458 (473)
+.||.|++||+..+...
T Consensus 357 s~D~~i~vwd~~~~~~~ 373 (410)
T 1vyh_C 357 ADDKTLRVWDYKNKRCM 373 (410)
T ss_dssp ETTTEEEEECCTTSCCC
T ss_pred eCCCeEEEEECCCCceE
Confidence 99999999999876543
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=303.95 Aligned_cols=287 Identities=15% Similarity=0.163 Sum_probs=230.7
Q ss_pred cceeeeeeecccEEEEEec--C-CEEEEeeCCCcEEEeeCCc--ccccc--ccCcccEEEEEEeC-CCCEEEEEeCCCeE
Q 012007 114 GLIGSIVRKEGHIYSLAAS--G-DLLYTGSDSKNIRVWKNLK--EFSGF--KSNSGLVKAIIISG-DSNKIFTGHQDGKI 185 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~--g-~~l~tg~~dg~i~vwd~~~--~~~~~--~~h~~~V~~l~~s~-~~~~l~s~~~dg~i 185 (473)
.+...+.+|.+.|.+++++ + ++|++|+.||.|+|||... ....+ .+|.+.|.+++|+| ++++|++++.||.|
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 143 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT 143 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence 4567889999999999876 5 7999999999999999762 23333 46999999999999 77999999999999
Q ss_pred EEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 012007 186 RIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS 265 (473)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~ 265 (473)
++||+.+.... ..... .+|...|.+++|+|++++|++|+.|+.|++||+
T Consensus 144 ~iwd~~~~~~~-~~~~~-----------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~- 192 (383)
T 3ei3_B 144 TLRDFSGSVIQ-VFAKT-----------------------------DSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL- 192 (383)
T ss_dssp EEEETTSCEEE-EEECC-----------------------------CCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-
T ss_pred EEEECCCCceE-EEecc-----------------------------CCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-
Confidence 99999853221 11110 025688999999999999999999999999999
Q ss_pred CCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc-CCCEEEEe
Q 012007 266 DCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ-ESAVVYCG 342 (473)
Q Consensus 266 ~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~ 342 (473)
+++.+..+..|...|.+++|+|++ ++++++.|+.|++||++.... .......+ .|...|.+++|+| ++.+|+++
T Consensus 193 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~ 269 (383)
T 3ei3_B 193 DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD--KNSYIAEM-PHEKPVNAAYFNPTDSTKLLTT 269 (383)
T ss_dssp TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS--TTCEEEEE-ECSSCEEEEEECTTTSCEEEEE
T ss_pred CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc--ccceEEEe-cCCCceEEEEEcCCCCCEEEEE
Confidence 678889999999999999999987 799999999999999985332 11222223 6999999999999 99999999
Q ss_pred CCCCcEEEEecCCcccccceeecCc-------c----------eE--EEEEecCCEEEEEeCCCcEEEEecCCCCceeEE
Q 012007 343 SSDGLVNFWECEKHLSHGGVLRGHK-------M----------AV--LCLAAAGNLVFSGSADRNICLWRREESGAHSCL 403 (473)
Q Consensus 343 ~~dg~i~iwd~~~~~~~~~~~~~~~-------~----------~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 403 (473)
+.|+.|++||+++..... .+.+|. . .+ .++++++++ +|+.|+.|++||+.+ .+++
T Consensus 270 ~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~---~~~~ 343 (383)
T 3ei3_B 270 DQRNEIRVYSSYDWSKPD-QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANS---GGLV 343 (383)
T ss_dssp ESSSEEEEEETTBTTSCS-EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTT---CCEE
T ss_pred cCCCcEEEEECCCCcccc-ccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCC---Ccee
Confidence 999999999998755442 333222 1 11 334456666 778999999999988 4667
Q ss_pred EEecC--CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 404 AVLTG--HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 404 ~~~~~--h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
..+.+ |...+..++|+|++. +|++|+ ||.|+||++.+
T Consensus 344 ~~l~~~~~~~~~~~~~~s~~g~-------------~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 344 HQLRDPNAAGIISLNKFSPTGD-------------VLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEECBTTBCSCCCEEEECTTSS-------------EEEEEE-TTEEEEEECC-
T ss_pred eeecCCCCCceEEEEEEecCcc-------------EEEEec-CCcEEEEecCC
Confidence 77776 567788889999998 899997 99999999875
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=314.88 Aligned_cols=292 Identities=16% Similarity=0.182 Sum_probs=223.7
Q ss_pred cceeeeeeecccEEEEEec---CCEEEEeeCCCcEEEeeCCc----cccccccCcccEEEEEEeC-CCCEEEEEeCCCeE
Q 012007 114 GLIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLK----EFSGFKSNSGLVKAIIISG-DSNKIFTGHQDGKI 185 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~---g~~l~tg~~dg~i~vwd~~~----~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i 185 (473)
.+.....+|...|+|++|+ +++||+|+.||.|+|||... ....+.+|.+.|++|+|+| ++++|++|+.||+|
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 3455677899999999985 56999999999999999652 2345678999999999998 68899999999999
Q ss_pred EEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 012007 186 RIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS 265 (473)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~ 265 (473)
++||+++.......... .+...+.+++|++++.+|++|+.||.|++||++
T Consensus 190 ~iwd~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~ 239 (435)
T 4e54_B 190 RLQDFKGNILRVFASSD------------------------------TINIWFCSLDVSASSRMVVTGDNVGNVILLNMD 239 (435)
T ss_dssp EEEETTSCEEEEEECCS------------------------------SCSCCCCCEEEETTTTEEEEECSSSBEEEEESS
T ss_pred EEeeccCCceeEEeccC------------------------------CCCccEEEEEECCCCCEEEEEeCCCcEeeeccC
Confidence 99999765432211110 144567899999999999999999999999985
Q ss_pred CCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC
Q 012007 266 DCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS 343 (473)
Q Consensus 266 ~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 343 (473)
++.+..+.+|...|.+++|+|++ ++++|+.|+.|++||++.... ........+|...|++++|+|++.+|++++
T Consensus 240 -~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~---~~~~~~~~~h~~~v~~~~~spdg~~l~s~~ 315 (435)
T 4e54_B 240 -GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG---KASFLYSLPHRHPVNAACFSPDGARLLTTD 315 (435)
T ss_dssp -SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS---SSCCSBCCBCSSCEEECCBCTTSSEEEEEE
T ss_pred -cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccc---cceEEEeeeccccccceeECCCCCeeEEEc
Confidence 56677888999999999999886 788999999999999975432 112234567999999999999999999999
Q ss_pred CCCcEEEEecCCcccccceeecCcc-------e-EEEEEecCCEEEEEe------------CCCcEEEEecCCCCceeEE
Q 012007 344 SDGLVNFWECEKHLSHGGVLRGHKM-------A-VLCLAAAGNLVFSGS------------ADRNICLWRREESGAHSCL 403 (473)
Q Consensus 344 ~dg~i~iwd~~~~~~~~~~~~~~~~-------~-v~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~ 403 (473)
.||.|++||+++..... .+..|.. . -..+.+++.+++++. .++.|++||..+ ..++
T Consensus 316 ~D~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~---g~~~ 391 (435)
T 4e54_B 316 QKSEIRVYSASQWDCPL-GLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNS---GKMM 391 (435)
T ss_dssp SSSCEEEEESSSSSSEE-EECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSS---CCEE
T ss_pred CCCEEEEEECCCCccce-EEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCC---CcEE
Confidence 99999999998754332 2222221 1 123334455555443 346799999988 3555
Q ss_pred EEe-cCCCCceeEE-EEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 404 AVL-TGHTGPVKCL-AVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 404 ~~~-~~h~~~V~~l-~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
..+ .+|...|.++ +|+|++. +|++|+ |+.|+||++.++++
T Consensus 392 ~~l~~~~~~~v~s~~~fspdg~-------------~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 392 CQLYDPESSGISSLNEFNPMGD-------------TLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp EEECCSSCCCCCCEEEECTTSS-------------CEEEEC-SSEEEECCCC----
T ss_pred EEEeCCCCCcEEEEEEECCCCC-------------EEEEEc-CCcEEEEECCcCee
Confidence 554 4788889887 6999998 788876 88999999988754
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=303.79 Aligned_cols=297 Identities=16% Similarity=0.185 Sum_probs=237.1
Q ss_pred eeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCCc----cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q 012007 119 IVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK----EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSR 192 (473)
Q Consensus 119 l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~----~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~ 192 (473)
+..|.+.|.++++ ++++|++|+.||.|++||... .+..+.+|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 3457888888776 588999999999999998653 5677889999999999999999999999999999999977
Q ss_pred CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee---
Q 012007 193 KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC--- 269 (473)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~--- 269 (473)
++....... ..|...|.+++|+|++++|++++.|+.|++||+..++.
T Consensus 84 ~~~~~~~~~------------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~ 133 (372)
T 1k8k_C 84 RTWKPTLVI------------------------------LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV 133 (372)
T ss_dssp TEEEEEEEC------------------------------CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEE
T ss_pred CeeeeeEEe------------------------------ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCccee
Confidence 653332221 13888999999999999999999999999999988762
Q ss_pred eE-EeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCC------------CcceeeeeeeccCCccEEEEEEccC
Q 012007 270 LE-SINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGK------------GTKHCLAQVLLKHENAVTALAVNQE 335 (473)
Q Consensus 270 ~~-~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~------------~~~~~~~~~~~~~~~~v~~l~~~~~ 335 (473)
.. ....|...|.+++|++++ +|++++.||.|++||++.... .........+..|...|.+++|+|+
T Consensus 134 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 213 (372)
T 1k8k_C 134 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN 213 (372)
T ss_dssp EEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS
T ss_pred eeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCC
Confidence 23 335689999999999987 899999999999999752210 0122345566689999999999999
Q ss_pred CCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEE--EecCCEEEEEeCCCcEEEEecCC--CC-------------
Q 012007 336 SAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCL--AAAGNLVFSGSADRNICLWRREE--SG------------- 398 (473)
Q Consensus 336 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~~~dg~i~iwd~~~--~~------------- 398 (473)
+.+|++++.||.|++||+++... ...+..|...+.++ ++++.+|++| .|+.|++|++.. +.
T Consensus 214 ~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~ 291 (372)
T 1k8k_C 214 GSRVAWVSHDSTVCLADADKKMA-VATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQS 291 (372)
T ss_dssp SSEEEEEETTTEEEEEEGGGTTE-EEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC---
T ss_pred CCEEEEEeCCCEEEEEECCCCce-eEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccc
Confidence 99999999999999999987644 35666787777655 5568888877 899999999977 21
Q ss_pred ----------------ceeEE------EEe-cCCCCceeEEEEec-CC---CCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 399 ----------------AHSCL------AVL-TGHTGPVKCLAVEE-DR---DHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 399 ----------------~~~~~------~~~-~~h~~~V~~l~~~~-~~---~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
..... ..+ .+|...|++++|.+ ++ . +|+||+.||.|++|+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~-------------~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 292 SQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS-------------QFCTTGMDGGMSIWD 358 (372)
T ss_dssp -----CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS-------------EEEEEETTSEEEEEE
T ss_pred hhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCccee-------------eEEEecCCCceEEEE
Confidence 01111 233 48999999999775 44 5 899999999999999
Q ss_pred cCCCCCCcc
Q 012007 452 VSEHAPDLK 460 (473)
Q Consensus 452 i~~~~~~~~ 460 (473)
+..++..++
T Consensus 359 ~~~~~~~~~ 367 (372)
T 1k8k_C 359 VRSLESALK 367 (372)
T ss_dssp HHHHHHHCT
T ss_pred ecChhHhhh
Confidence 987655444
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-38 Score=294.83 Aligned_cols=251 Identities=22% Similarity=0.302 Sum_probs=216.3
Q ss_pred cccccCcccEEEEEEeCC----CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceee
Q 012007 155 SGFKSNSGLVKAIIISGD----SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVL 230 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (473)
..+.+|.+.|.+++|+++ +.+|++|+.|++|+||++..........
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~------------------------------ 75 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWS------------------------------ 75 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEE------------------------------
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeee------------------------------
Confidence 356789999999999875 5799999999999999987664332222
Q ss_pred EeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccC
Q 012007 231 KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 231 ~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~ 309 (473)
..+|...|.+++|++++.++++++.|++|++||+.+++.+..+..|...+.+++|+|++ +|++++.||.|++||++...
T Consensus 76 l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~ 155 (321)
T 3ow8_A 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK 155 (321)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS
T ss_pred eccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc
Confidence 12599999999999999999999999999999999999999999999999999999998 89999999999999997432
Q ss_pred CCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCC
Q 012007 310 KGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADR 387 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg 387 (473)
....+..|...|.+++|+|++++|++++.||.|++||++++.. ...+.+|...+.++. +++++|++|+.|+
T Consensus 156 ------~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~spd~~~l~s~s~dg 228 (321)
T 3ow8_A 156 ------KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL-LHTLEGHAMPIRSLTFSPDSQLLVTASDDG 228 (321)
T ss_dssp ------EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCCCEEEECTTSCEEEEECTTS
T ss_pred ------eeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-EEEEcccCCceeEEEEcCCCCEEEEEcCCC
Confidence 2345667888999999999999999999999999999987644 356678887775554 5799999999999
Q ss_pred cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 388 NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
.|++||+.. ..++..+.+|...|.+++|+|++. +|++++.|++|+|||+.++...
T Consensus 229 ~i~iwd~~~---~~~~~~~~~h~~~v~~~~~sp~~~-------------~l~s~s~D~~v~iwd~~~~~~~ 283 (321)
T 3ow8_A 229 YIKIYDVQH---ANLAGTLSGHASWVLNVAFCPDDT-------------HFVSSSSDKSVKVWDVGTRTCV 283 (321)
T ss_dssp CEEEEETTT---CCEEEEECCCSSCEEEEEECTTSS-------------EEEEEETTSCEEEEETTTTEEE
T ss_pred eEEEEECCC---cceeEEEcCCCCceEEEEECCCCC-------------EEEEEeCCCcEEEEeCCCCEEE
Confidence 999999988 567888999999999999999998 8999999999999999876543
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-37 Score=289.83 Aligned_cols=279 Identities=17% Similarity=0.291 Sum_probs=233.7
Q ss_pred eeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCCcc-----ccccc--cCcccEEEEEEeCCCCEEEEEeCCCeEEEE
Q 012007 118 SIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKE-----FSGFK--SNSGLVKAIIISGDSNKIFTGHQDGKIRIW 188 (473)
Q Consensus 118 ~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~~-----~~~~~--~h~~~V~~l~~s~~~~~l~s~~~dg~i~vw 188 (473)
...+|.+.|.++++ ++++|++++ ||.|++||.... +..+. .|...|.+++|+|++++|++++.||.|++|
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 124 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 34479999988876 488999999 999999997532 22222 789999999999999999999999999999
Q ss_pred eCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe
Q 012007 189 KVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK 268 (473)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~ 268 (473)
|+.+++....... ..|...|.+++|+|++++|++++.|+.|++||+++++
T Consensus 125 d~~~~~~~~~~~~------------------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~ 174 (337)
T 1gxr_A 125 DLAAPTPRIKAEL------------------------------TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT 174 (337)
T ss_dssp ECCCC--EEEEEE------------------------------ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred ECCCCCcceeeec------------------------------ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 9987753222221 1388899999999999999999999999999999999
Q ss_pred eeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCc
Q 012007 269 CLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGL 347 (473)
Q Consensus 269 ~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~ 347 (473)
.+..+..|...+.+++|+|++ .+++++.||.|++||++... . . ....+...+.+++|+|++++|++++.|+.
T Consensus 175 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-----~-~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 247 (337)
T 1gxr_A 175 LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR-----Q-L-QQHDFTSQIFSLGYCPTGEWLAVGMESSN 247 (337)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----E-E-EEEECSSCEEEEEECTTSSEEEEEETTSC
T ss_pred eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCc-----e-E-eeecCCCceEEEEECCCCCEEEEEcCCCc
Confidence 999999999999999999988 89999999999999997432 1 1 22357788999999999999999999999
Q ss_pred EEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCC
Q 012007 348 VNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHD 425 (473)
Q Consensus 348 i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 425 (473)
|++||+++... ..+..|...+.++.+ ++++|++++.||.|++||+.++ ..+.. ..|...|.+++|+|++.
T Consensus 248 i~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~---~~~~~-~~~~~~v~~~~~s~~~~-- 319 (337)
T 1gxr_A 248 VEVLHVNKPDK--YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQ-SKESSSVLSCDISVDDK-- 319 (337)
T ss_dssp EEEEETTSSCE--EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEE-EECSSCEEEEEECTTSC--
T ss_pred EEEEECCCCCe--EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCC---eEEEE-ecCCCcEEEEEECCCCC--
Confidence 99999987644 356678888876665 5899999999999999999884 33333 35788999999999998
Q ss_pred cccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 426 HEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 426 ~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
+|++++.||.|++|++.
T Consensus 320 -----------~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 320 -----------YIVTGSGDKKATVYEVI 336 (337)
T ss_dssp -----------EEEEEETTSCEEEEEEE
T ss_pred -----------EEEEecCCCeEEEEEEe
Confidence 89999999999999973
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=313.46 Aligned_cols=280 Identities=26% Similarity=0.443 Sum_probs=243.9
Q ss_pred cceeeeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 114 GLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
..+..+.+|.+.|.++++ ++++|++++.|+.|++||.. +.+..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 253 ~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~ 332 (577)
T 2ymu_A 253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 332 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 456678889999998876 58899999999999999965 456678899999999999999999999999999999998
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL 270 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~ 270 (473)
....... ..+|...|.+++|+|++++|++|+.|+.|++||. +++.+
T Consensus 333 ~~~~~~~---------------------------------~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~ 378 (577)
T 2ymu_A 333 NGQHLQT---------------------------------LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLL 378 (577)
T ss_dssp TSCEEEE---------------------------------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEE
T ss_pred CCCeeEE---------------------------------EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEE
Confidence 6543211 1138899999999999999999999999999995 67888
Q ss_pred EEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEE
Q 012007 271 ESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVN 349 (473)
Q Consensus 271 ~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~ 349 (473)
..+..|...|.+++|+|++ +|++++.|+.|++||.. ......+..|...|++++|+|++++|++++.|+.|+
T Consensus 379 ~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-------~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~ 451 (577)
T 2ymu_A 379 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVK 451 (577)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-------CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-------CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEE
Confidence 8999999999999999998 89999999999999963 123566788999999999999999999999999999
Q ss_pred EEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcc
Q 012007 350 FWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHE 427 (473)
Q Consensus 350 iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~ 427 (473)
+||... .....+.+|...+.+++ +++++|++++.|+.|++||... +++..+.+|...|++++|+|+++
T Consensus 452 ~w~~~~--~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~----~~~~~~~~h~~~v~~l~~s~dg~---- 521 (577)
T 2ymu_A 452 LWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG----QLLQTLTGHSSSVRGVAFSPDGQ---- 521 (577)
T ss_dssp EEETTS--CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS----CEEEEEECCSSCEEEEEECTTSS----
T ss_pred EEECCC--CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC----CEEEEEeCCCCCEEEEEEcCCCC----
Confidence 999754 23356778888887665 5799999999999999999643 67888999999999999999998
Q ss_pred cccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 428 YHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 428 ~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
+|++++.||.|+|||..
T Consensus 522 ---------~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 522 ---------TIASASDDKTVKLWNRN 538 (577)
T ss_dssp ---------CEEEEETTSEEEEECTT
T ss_pred ---------EEEEEECcCEEEEEeCC
Confidence 89999999999999964
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-38 Score=297.47 Aligned_cols=289 Identities=16% Similarity=0.202 Sum_probs=232.4
Q ss_pred eeeeecccEEEEEec------CCEEEEeeCCCcEEEeeCC--cccccccc-----CcccEEEEEEeCC----CCEEEEEe
Q 012007 118 SIVRKEGHIYSLAAS------GDLLYTGSDSKNIRVWKNL--KEFSGFKS-----NSGLVKAIIISGD----SNKIFTGH 180 (473)
Q Consensus 118 ~l~~h~~~V~~~~~~------g~~l~tg~~dg~i~vwd~~--~~~~~~~~-----h~~~V~~l~~s~~----~~~l~s~~ 180 (473)
...+|.+.|.+++++ ..++++++.++.|+|||.. +.+..+.. |...|.+++|+|+ +++|++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 445899999999987 3456666667799999966 23333332 6688999999999 67999999
Q ss_pred CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCE
Q 012007 181 QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTL 259 (473)
Q Consensus 181 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v 259 (473)
.||.|++||+.+++...... +|...|.+++|+| ++.+|++|+.||.|
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~--------------------------------~~~~~i~~~~~~~~~~~~l~s~~~dg~i 140 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYV--------------------------------GHGNAINELKFHPRDPNLLLSVSKDHAL 140 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEE--------------------------------SCCSCEEEEEECSSCTTEEEEEETTSCE
T ss_pred CCCEEEEEEchhceEeeeec--------------------------------CCCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence 99999999998876543322 3899999999999 99999999999999
Q ss_pred EEEEcCCCeeeEEe---ecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcc----------------------
Q 012007 260 KVWRISDCKCLESI---NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTK---------------------- 313 (473)
Q Consensus 260 ~vwd~~~~~~~~~~---~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~---------------------- 313 (473)
++||+++++.+..+ ..|...|.+++|+|++ +|++++.||.|++||++.......
T Consensus 141 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (366)
T 3k26_A 141 RLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIH 220 (366)
T ss_dssp EEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEEC
T ss_pred EEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeec
Confidence 99999999999888 6899999999999987 899999999999999974321000
Q ss_pred eeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccc-------------ccceeecCcceE--EEEEec--
Q 012007 314 HCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLS-------------HGGVLRGHKMAV--LCLAAA-- 376 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------------~~~~~~~~~~~v--~~~~~~-- 376 (473)
.........|...|.+++|+ +++|++++.||.|++||+++... ....+.+|...+ .+++++
T Consensus 221 ~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 298 (366)
T 3k26_A 221 FPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFW 298 (366)
T ss_dssp CCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTT
T ss_pred cCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCC
Confidence 00112233489999999999 77999999999999999876533 123444565555 455677
Q ss_pred CCEEEEEeCCCcEEEEecCCCCce-eEEEEecCC--CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 377 GNLVFSGSADRNICLWRREESGAH-SCLAVLTGH--TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 377 ~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~h--~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
+++|++|+.||.|++||+.++... .....+.+| ...|++++|+|++. +|++++.||.|++||+.
T Consensus 299 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------------~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 299 QKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSS-------------ILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSS-------------EEEEEETTSEEEEEEC-
T ss_pred CcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCC-------------eEEEEeCCCEEEEEEec
Confidence 999999999999999999985433 255677777 78999999999998 89999999999999985
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-37 Score=302.77 Aligned_cols=287 Identities=21% Similarity=0.318 Sum_probs=243.2
Q ss_pred ceeeeeeeccc-EEEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q 012007 115 LIGSIVRKEGH-IYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVS 191 (473)
Q Consensus 115 ~~~~l~~h~~~-V~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~ 191 (473)
....+.+|.+. +.++.+++++|++|+.||+|++||.. +.+..+.+|.+.|.+++|++++ +|++|+.||.|++||+.
T Consensus 113 ~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~ 191 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK 191 (464)
T ss_dssp EEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETT
T ss_pred ceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC
Confidence 35678899887 57899999999999999999999965 5567788999999999999988 99999999999999998
Q ss_pred CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEc--CCCCEEEEEeCCCCEEEEEcCCCee
Q 012007 192 RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLN--AEQGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
+++...... +|...|.+++|+ +++.+|++|+.|+.|++||+.+++.
T Consensus 192 ~~~~~~~~~--------------------------------~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~ 239 (464)
T 3v7d_B 192 KGCCTHVFE--------------------------------GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 239 (464)
T ss_dssp TTEEEEEEC--------------------------------CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCC
T ss_pred CCcEEEEEC--------------------------------CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcc
Confidence 876433222 489999999998 5788999999999999999987652
Q ss_pred -----------------------eEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCcc
Q 012007 270 -----------------------LESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENA 326 (473)
Q Consensus 270 -----------------------~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
+..+.+|...+.++... ..++++++.||.|++||++. ......+.+|...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~vwd~~~------~~~~~~~~~~~~~ 312 (464)
T 3v7d_B 240 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH-GNIVVSGSYDNTLIVWDVAQ------MKCLYILSGHTDR 312 (464)
T ss_dssp C------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTT------TEEEEEECCCSSC
T ss_pred cccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCC-CCEEEEEeCCCeEEEEECCC------CcEEEEecCCCCC
Confidence 45677888888888532 34899999999999999963 2345667789999
Q ss_pred EEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEe
Q 012007 327 VTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVL 406 (473)
Q Consensus 327 v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 406 (473)
|.+++|+|++++|++|+.||.|++||++++.. ...+.+|...+.++.+++.+|++|+.||.|++||+.+. ......
T Consensus 313 v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~---~~~~~~ 388 (464)
T 3v7d_B 313 IYSTIYDHERKRCISASMDTTIRIWDLENGEL-MYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDY---SRKFSY 388 (464)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTC---CEEEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE-EEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCC---ceeeee
Confidence 99999999999999999999999999987644 45677899999999999999999999999999999884 333333
Q ss_pred cCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 407 TGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 407 ~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
.|...+..++|++++. +|++|+ ||.|++||+.+++....
T Consensus 389 -~~~~~~~~~~~~~~~~-------------~l~~~~-dg~i~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 389 -HHTNLSAITTFYVSDN-------------ILVSGS-ENQFNIYNLRSGKLVHA 427 (464)
T ss_dssp -ECTTCCCEEEEEECSS-------------EEEEEE-TTEEEEEETTTCCEEES
T ss_pred -cCCCCccEEEEEeCCC-------------EEEEec-CCeEEEEECCCCcEEeh
Confidence 3667788999999998 888888 89999999998876543
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-38 Score=308.17 Aligned_cols=297 Identities=18% Similarity=0.276 Sum_probs=225.0
Q ss_pred cceeee-eeecccEEEEEe---cCCEEEEeeCCCcEEEeeCCc---c--c-cccc-cCcccEEEEEEeCCCCEEEEEeCC
Q 012007 114 GLIGSI-VRKEGHIYSLAA---SGDLLYTGSDSKNIRVWKNLK---E--F-SGFK-SNSGLVKAIIISGDSNKIFTGHQD 182 (473)
Q Consensus 114 ~~~~~l-~~h~~~V~~~~~---~g~~l~tg~~dg~i~vwd~~~---~--~-~~~~-~h~~~V~~l~~s~~~~~l~s~~~d 182 (473)
.++..+ .+|.+.|.++++ ++++||+|+.||+|+|||... . . ..+. .|.+.|.+++|+|++++|++|+.|
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 132 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKD 132 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCC
Confidence 456677 789999999876 568999999999999998643 1 1 1222 589999999999999999999999
Q ss_pred CeEEEEeCC---CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee--ccCCeeEEE--EcCCCCEEEEEeC
Q 012007 183 GKIRIWKVS---RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR--HYDAVSCLS--LNAEQGLLYSGSW 255 (473)
Q Consensus 183 g~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~l~--~~~~~~~l~s~s~ 255 (473)
|.|++||+. .++......... .....+.. +...+.++. +++++.+|++|+.
T Consensus 133 g~i~vwd~~~~~~~~~~~~~~~~~----------------------i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 190 (437)
T 3gre_A 133 GQIIVLKVNHYQQESEVKFLNCEC----------------------IRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN 190 (437)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEE----------------------EEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET
T ss_pred CEEEEEEeccccCCceeeccccce----------------------eEEEEccCcccccCceEEEEEEcCCCCEEEEEeC
Confidence 999999995 333322211100 00000001 566788888 6689999999999
Q ss_pred CCCEEEEEcCCCeeeEEeec--CCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeee-ccCCccEEEEE
Q 012007 256 DKTLKVWRISDCKCLESINA--HDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVL-LKHENAVTALA 331 (473)
Q Consensus 256 dg~v~vwd~~~~~~~~~~~~--~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~v~~l~ 331 (473)
|+.|++||+++++++..+.. |...|.+++|+|++ +|++|+.||.|++||++. .. ....+ ..|...|++++
T Consensus 191 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-----~~-~~~~~~~~~~~~v~~~~ 264 (437)
T 3gre_A 191 LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF-----NV-LIRSWSFGDHAPITHVE 264 (437)
T ss_dssp TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT-----TE-EEEEEBCTTCEEEEEEE
T ss_pred CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC-----cc-EEEEEecCCCCceEEEE
Confidence 99999999999999999988 89999999999988 899999999999999973 22 23333 37788999996
Q ss_pred Ecc----CCCEEEEeCCCCcEEEEecCCccccccee-----------------------ec--CcceEEEEEe-cCCEEE
Q 012007 332 VNQ----ESAVVYCGSSDGLVNFWECEKHLSHGGVL-----------------------RG--HKMAVLCLAA-AGNLVF 381 (473)
Q Consensus 332 ~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------------------~~--~~~~v~~~~~-~~~~l~ 381 (473)
|+| ++.+|++++.||.|++||++++....... .+ |...+.++++ ++++|+
T Consensus 265 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~ 344 (437)
T 3gre_A 265 VCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILL 344 (437)
T ss_dssp ECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEE
T ss_pred eccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEE
Confidence 664 67799999999999999998654322111 12 5555655554 467999
Q ss_pred EEeCCCcEEEEecCCCCceeEEEE----------------------------------ecCCCCceeEEEEecC--CCCC
Q 012007 382 SGSADRNICLWRREESGAHSCLAV----------------------------------LTGHTGPVKCLAVEED--RDHD 425 (473)
Q Consensus 382 s~~~dg~i~iwd~~~~~~~~~~~~----------------------------------~~~h~~~V~~l~~~~~--~~~~ 425 (473)
+|+.|+.|++||+.++.....+.. ...|...|++++|.++ +.
T Consensus 345 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~-- 422 (437)
T 3gre_A 345 TDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETP-- 422 (437)
T ss_dssp EEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSE--
T ss_pred ecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCce--
Confidence 999999999999987432222211 1238999999999998 44
Q ss_pred cccccCCCccEEEEEeeCCCcEEEEE
Q 012007 426 HEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 426 ~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
+|++|+.||.|+||+
T Consensus 423 -----------~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 423 -----------LLVACDNSGLIGIFQ 437 (437)
T ss_dssp -----------EEEEEETTSCEEEEC
T ss_pred -----------EEEEEcCCceEEEeC
Confidence 899999999999995
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=292.24 Aligned_cols=240 Identities=16% Similarity=0.178 Sum_probs=200.3
Q ss_pred eeeeeecccEEEEEec-CCEEEEeeCCCcEEEeeCCc--ccc----ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEe
Q 012007 117 GSIVRKEGHIYSLAAS-GDLLYTGSDSKNIRVWKNLK--EFS----GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWK 189 (473)
Q Consensus 117 ~~l~~h~~~V~~~~~~-g~~l~tg~~dg~i~vwd~~~--~~~----~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd 189 (473)
.....|+..|.+++|+ .+.|++|+.||+|+|||+.. .+. .+.+|.+.|++|+|+|+|++|++|+.||.|++||
T Consensus 76 ~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd 155 (344)
T 4gqb_B 76 SAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155 (344)
T ss_dssp SEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 3445577889999986 46899999999999999653 222 3457999999999999999999999999999999
Q ss_pred CCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCC-CEEEEEeCCCCEEEEEcCCCe
Q 012007 190 VSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRISDCK 268 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~s~dg~v~vwd~~~~~ 268 (473)
+.+++...... +|...|.+++|++++ .+|++|+.|++|++||+++++
T Consensus 156 ~~~~~~~~~~~--------------------------------~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~ 203 (344)
T 4gqb_B 156 LAQQVVLSSYR--------------------------------AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK 203 (344)
T ss_dssp TTTTEEEEEEC--------------------------------CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS
T ss_pred CCCCcEEEEEc--------------------------------CcCCceEEEEecCCCCCceeeeccccccccccccccc
Confidence 99876543332 499999999999987 578999999999999999999
Q ss_pred eeEEee--cCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC-CEEEEeC
Q 012007 269 CLESIN--AHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES-AVVYCGS 343 (473)
Q Consensus 269 ~~~~~~--~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~ 343 (473)
++..+. .|...+.+++|+|++ +|++|+.||.|++||++.. .....+.+|...|++++|+|++ ++|++|+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~------~~~~~~~~h~~~v~~v~fsp~g~~~lasgs 277 (344)
T 4gqb_B 204 PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST------SCVLSSAVHSQCVTGLVFSPHSVPFLASLS 277 (344)
T ss_dssp CEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--------CCEEEECCSSCEEEEEECSSSSCCEEEEE
T ss_pred eeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC------cEEEEEcCCCCCEEEEEEccCCCeEEEEEe
Confidence 888774 456678999999864 7889999999999999743 2456778999999999999997 6899999
Q ss_pred CCCcEEEEecCCcccccceeecCcceEEEEEe--cC-CEEEEEeCCCcEEEEecCC
Q 012007 344 SDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AG-NLVFSGSADRNICLWRREE 396 (473)
Q Consensus 344 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~s~~~dg~i~iwd~~~ 396 (473)
.|+.|+|||++++... .+.+|...|.++++ ++ .+|++|+.|++|++|++.+
T Consensus 278 ~D~~i~vwd~~~~~~~--~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 278 EDCSLAVLDSSLSELF--RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp TTSCEEEECTTCCEEE--EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred CCCeEEEEECCCCcEE--EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 9999999999876543 56789999988876 45 4788999999999999987
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=303.04 Aligned_cols=280 Identities=25% Similarity=0.421 Sum_probs=233.4
Q ss_pred eeecccEEEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeee
Q 012007 120 VRKEGHIYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASV 197 (473)
Q Consensus 120 ~~h~~~V~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~ 197 (473)
.+|...|+++++++++|++|+.||.|++||.. +....+.+|.+.|.+++| ++++|++|+.||.|++||+.+++...
T Consensus 130 ~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~ 207 (435)
T 1p22_A 130 SETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN 207 (435)
T ss_dssp CSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred cCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE
Confidence 45667799999999999999999999999965 456778899999999999 77899999999999999999886543
Q ss_pred EEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee---EEee
Q 012007 198 HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL---ESIN 274 (473)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~---~~~~ 274 (473)
... +|...|.+++|++ ++|++|+.||.|++||+.+++.+ ..+.
T Consensus 208 ~~~--------------------------------~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 253 (435)
T 1p22_A 208 TLI--------------------------------HHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLV 253 (435)
T ss_dssp EEC--------------------------------CCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEEC
T ss_pred EEc--------------------------------CCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEec
Confidence 322 3889999999964 69999999999999999987665 6778
Q ss_pred cCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC
Q 012007 275 AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 275 ~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 354 (473)
+|...|.++.+ ...++++|+.||.|++||++.. .....+..|...|.+++++ +.++++|+.||.|++||++
T Consensus 254 ~~~~~v~~~~~-~~~~l~s~~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~ 324 (435)
T 1p22_A 254 GHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTC------EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIE 324 (435)
T ss_dssp CCSSCEEEEEE-ETTEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred CCCCcEEEEEe-CCCEEEEEeCCCeEEEEECCcC------cEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECC
Confidence 89999999999 4459999999999999999743 2456677899999999994 6799999999999999999
Q ss_pred CcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCc------eeEEEEecCCCCceeEEEEecCCCCCccc
Q 012007 355 KHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGA------HSCLAVLTGHTGPVKCLAVEEDRDHDHEY 428 (473)
Q Consensus 355 ~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~h~~~V~~l~~~~~~~~~~~~ 428 (473)
++.. ...+.+|...+.++.+++.+|++|+.||.|++||+..... ..++..+.+|.+.|++++| ++.
T Consensus 325 ~~~~-~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~----- 396 (435)
T 1p22_A 325 CGAC-LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEF----- 396 (435)
T ss_dssp TCCE-EEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSS-----
T ss_pred CCCE-EEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCC-----
Confidence 8644 3567789999999999999999999999999999875221 1278889999999999999 455
Q ss_pred ccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 429 HQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 429 ~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
+|++|+.||.|++||+........
T Consensus 397 --------~l~s~s~Dg~i~iwd~~~~~~~~~ 420 (435)
T 1p22_A 397 --------QIVSSSHDDTILIWDFLNDPAAQA 420 (435)
T ss_dssp --------CEEECCSSSEEEEEC---------
T ss_pred --------EEEEEeCCCEEEEEECCCCCCccc
Confidence 799999999999999988765433
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-37 Score=294.11 Aligned_cols=296 Identities=15% Similarity=0.206 Sum_probs=236.5
Q ss_pred cceeeeeeecccEEEEEe---cCCEEEEeeCCCcEEEeeCCcc--cccc-------------ccCcccEEEEEEeC-CCC
Q 012007 114 GLIGSIVRKEGHIYSLAA---SGDLLYTGSDSKNIRVWKNLKE--FSGF-------------KSNSGLVKAIIISG-DSN 174 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~---~g~~l~tg~~dg~i~vwd~~~~--~~~~-------------~~h~~~V~~l~~s~-~~~ 174 (473)
.....+.+|.+.|.++++ ++++|++|+.||.|++||.... ...+ .+|...|.+++|+| +++
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence 445677889999999887 5789999999999999997632 2222 35999999999999 778
Q ss_pred EEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC---CCEEE
Q 012007 175 KIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE---QGLLY 251 (473)
Q Consensus 175 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~ 251 (473)
+|++++.||.|++||+.+++...... +...+.++.|.+. +.+++
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~ 160 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTADVFN---------------------------------FEETVYSHHMSPVSTKHCLVA 160 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEE---------------------------------CSSCEEEEEECSSCSSCCEEE
T ss_pred EEEEEeCCCeEEEeeCCCCccceecc---------------------------------CCCceeeeEeecCCCCCcEEE
Confidence 99999999999999998876543332 6778999999984 45999
Q ss_pred EEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCc----------ceeeeee
Q 012007 252 SGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGT----------KHCLAQV 319 (473)
Q Consensus 252 s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~----------~~~~~~~ 319 (473)
+++.|+.|++||+++++.+..+..|...|.+++|+|++ ++++++.||.|++||++...... .......
T Consensus 161 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (408)
T 4a11_B 161 VGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA 240 (408)
T ss_dssp EEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTS
T ss_pred EEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccc
Confidence 99999999999999999999999999999999999997 58899999999999997543110 1111223
Q ss_pred eccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeec-----CcceEEEEE-ecCCEEEEEeCCCcEEEEe
Q 012007 320 LLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRG-----HKMAVLCLA-AAGNLVFSGSADRNICLWR 393 (473)
Q Consensus 320 ~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~-~~~~~l~s~~~dg~i~iwd 393 (473)
...|...|.+++|+|++++|++++.||.|++||+++.......... .......+. ..+..+++++.|+.|++||
T Consensus 241 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d 320 (408)
T 4a11_B 241 NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYT 320 (408)
T ss_dssp SCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEE
T ss_pred cccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEE
Confidence 3678899999999999999999999999999999875443221110 011112222 2356677778899999999
Q ss_pred cCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 394 REESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 394 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
+.+ ..++..+.+|...|++++|+|++. +|++++.||.|++|++...++.
T Consensus 321 ~~~---~~~~~~~~~~~~~v~~~~~s~~~~-------------~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 321 VYS---GEQITMLKGHYKTVDCCVFQSNFQ-------------ELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp TTT---CCEEEEECCCSSCEEEEEEETTTT-------------EEEEEETTSCEEEEEECC----
T ss_pred CcC---CcceeeeccCCCeEEEEEEcCCCC-------------EEEEECCCCeEEEEeCCCCCcc
Confidence 998 578889999999999999999998 8999999999999999987654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-37 Score=295.62 Aligned_cols=287 Identities=19% Similarity=0.258 Sum_probs=228.8
Q ss_pred eeeccc--EEEEEecCCEEEEeeCCCcEEEeeCCc--ccccccc-CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC
Q 012007 120 VRKEGH--IYSLAASGDLLYTGSDSKNIRVWKNLK--EFSGFKS-NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKN 194 (473)
Q Consensus 120 ~~h~~~--V~~~~~~g~~l~tg~~dg~i~vwd~~~--~~~~~~~-h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~ 194 (473)
.+|... +.++++++..+++++.||.|++||... ....+.. |...|.+++|+|++++|++|+.||.|++||+.+++
T Consensus 88 ~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 167 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT 167 (401)
T ss_dssp TTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred CCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe
Confidence 344443 566888888899999999999999753 2333333 78999999999999999999999999999998876
Q ss_pred eeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC-CCeeeEEe
Q 012007 195 ASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS-DCKCLESI 273 (473)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~-~~~~~~~~ 273 (473)
...... +|...|.+++| ++.+|++|+.||.|++||++ ....+..+
T Consensus 168 ~~~~~~--------------------------------~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 213 (401)
T 4aez_A 168 KLRTMA--------------------------------GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTL 213 (401)
T ss_dssp EEEEEC--------------------------------CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred EEEEec--------------------------------CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEE
Confidence 543332 38999999999 45799999999999999998 56778889
Q ss_pred ecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC-CEEEEeC--CCCcEE
Q 012007 274 NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES-AVVYCGS--SDGLVN 349 (473)
Q Consensus 274 ~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~--~dg~i~ 349 (473)
..|...|.+++|++++ +|++++.||.|++||++.. .....+..|...|.+++|+|++ .++++++ .|+.|+
T Consensus 214 ~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~------~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~ 287 (401)
T 4aez_A 214 QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS------IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIH 287 (401)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS------SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEE
T ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC------CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEE
Confidence 9999999999999987 8999999999999999742 2345567899999999999976 5666654 799999
Q ss_pred EEecCCcccccceeecCcceEEEE--EecCCEEEE--EeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCC
Q 012007 350 FWECEKHLSHGGVLRGHKMAVLCL--AAAGNLVFS--GSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHD 425 (473)
Q Consensus 350 iwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 425 (473)
+||++++....... +...+.++ ++++++|++ |+.||.|++|++.++ .......+.+|...|.+++|+|++.
T Consensus 288 i~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~-~~~~~~~~~~h~~~v~~~~~s~dg~-- 362 (401)
T 4aez_A 288 FWNAATGARVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS-GLTKQVDIPAHDTRVLYSALSPDGR-- 362 (401)
T ss_dssp EEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT-EEEEEEEEECCSSCCCEEEECTTSS--
T ss_pred EEECCCCCEEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc-cceeEEEecCCCCCEEEEEECCCCC--
Confidence 99998765543332 44455554 567999998 448999999999873 2344556779999999999999998
Q ss_pred cccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCC
Q 012007 426 HEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGL 462 (473)
Q Consensus 426 ~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~ 462 (473)
+|++++.||.|++|++.+++...+..
T Consensus 363 -----------~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 363 -----------ILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp -----------EEEEECTTSEEEEEECCC--------
T ss_pred -----------EEEEEeCCCcEEEEECCCCccccccc
Confidence 89999999999999999887655443
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=296.18 Aligned_cols=280 Identities=28% Similarity=0.468 Sum_probs=243.3
Q ss_pred ceeeeeeeccc-EEEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q 012007 115 LIGSIVRKEGH-IYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVS 191 (473)
Q Consensus 115 ~~~~l~~h~~~-V~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~ 191 (473)
....+.+|.+. +.++.++|++|++|+.||+|++||.. +.+..+.+|.+.|.+++|+ +++|++|+.||.|++||+.
T Consensus 110 ~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 110 SPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp CCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred eeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence 45678899986 58899999999999999999999965 5567888999999999998 4599999999999999998
Q ss_pred CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeE
Q 012007 192 RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE 271 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~ 271 (473)
+++...... +|...|.++.|+ ++.|++|+.||.|++||+.+++.+.
T Consensus 188 ~~~~~~~~~--------------------------------~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~ 233 (445)
T 2ovr_B 188 TGECIHTLY--------------------------------GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLH 233 (445)
T ss_dssp TTEEEEEEC--------------------------------CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEE
T ss_pred cCcEEEEEC--------------------------------CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEE
Confidence 876443322 488999999995 5789999999999999999999999
Q ss_pred EeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEE
Q 012007 272 SINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFW 351 (473)
Q Consensus 272 ~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iw 351 (473)
.+..|...|.++.+ .+..+++|+.||.|++||++.. .....+..|...|.+++| ++.++++++.||.|++|
T Consensus 234 ~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~ 304 (445)
T 2ovr_B 234 VLMGHVAAVRCVQY-DGRRVVSGAYDFMVKVWDPETE------TCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVW 304 (445)
T ss_dssp EEECCSSCEEEEEE-CSSCEEEEETTSCEEEEEGGGT------EEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEE
T ss_pred EEcCCcccEEEEEE-CCCEEEEEcCCCEEEEEECCCC------cEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEE
Confidence 99999999999999 4458999999999999998632 345667789999999999 78899999999999999
Q ss_pred ecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecC---CCCceeEEEEecCCCCCccc
Q 012007 352 ECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTG---HTGPVKCLAVEEDRDHDHEY 428 (473)
Q Consensus 352 d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---h~~~V~~l~~~~~~~~~~~~ 428 (473)
|++++... ..+.+|...+.++.+++++|++|+.||.|++||+.+ ..++..+.+ |...|++++|++ .
T Consensus 305 d~~~~~~~-~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~--~----- 373 (445)
T 2ovr_B 305 DVETGNCI-HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKT---GQCLQTLQGPNKHQSAVTCLQFNK--N----- 373 (445)
T ss_dssp ETTTCCEE-EEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTT---CCEEEEECSTTSCSSCEEEEEECS--S-----
T ss_pred ECCCCCEE-EEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCC---CcEEEEEccCCCCCCCEEEEEECC--C-----
Confidence 99886443 567789999999999999999999999999999988 456666665 889999999964 3
Q ss_pred ccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 429 HQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 429 ~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
+|++|+.||.|++||+.+++..
T Consensus 374 --------~l~s~~~dg~v~iwd~~~~~~~ 395 (445)
T 2ovr_B 374 --------FVITSSDDGTVKLWDLKTGEFI 395 (445)
T ss_dssp --------EEEEEETTSEEEEEETTTCCEE
T ss_pred --------EEEEEeCCCeEEEEECCCCcee
Confidence 8999999999999999987643
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-37 Score=290.19 Aligned_cols=259 Identities=20% Similarity=0.317 Sum_probs=216.9
Q ss_pred cccccccCcc-cEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeE
Q 012007 153 EFSGFKSNSG-LVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231 (473)
Q Consensus 153 ~~~~~~~h~~-~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (473)
.+..+.+|.+ .|.+++|+|+|++|++|+.|+.|+|||+.++........ .
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~-----------------------------~ 57 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVL-----------------------------S 57 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEE-----------------------------C
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeee-----------------------------c
Confidence 4566788987 999999999999999999999999999877643222111 1
Q ss_pred eeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC--eeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCccc
Q 012007 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC--KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQ 308 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~--~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~ 308 (473)
.+|...|.+++|+|++++|++|+.|++|++||+..+ +++..+.+|...|.+++|+|++ +|++|+.|+.|++||++..
T Consensus 58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~ 137 (345)
T 3fm0_A 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE 137 (345)
T ss_dssp SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT
T ss_pred cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC
Confidence 249999999999999999999999999999999876 4678889999999999999988 9999999999999999743
Q ss_pred CCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcc-cccceeecCcceEEEEEe--cCCEEEEEeC
Q 012007 309 GKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHL-SHGGVLRGHKMAVLCLAA--AGNLVFSGSA 385 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 385 (473)
. .......+..|...|.+++|+|++.+|++++.|+.|++||.+... .....+.+|...|.++++ ++++|++|+.
T Consensus 138 ~---~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~ 214 (345)
T 3fm0_A 138 D---EYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD 214 (345)
T ss_dssp S---CEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred C---CeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC
Confidence 2 223455678899999999999999999999999999999987643 233567789988877765 6899999999
Q ss_pred CCcEEEEecCCCC------------ceeEEEEecC-CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 386 DRNICLWRREESG------------AHSCLAVLTG-HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 386 dg~i~iwd~~~~~------------~~~~~~~~~~-h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
|++|+||+..... ...++..+.+ |...|.+++|++++. .|++++.|+.|++|++
T Consensus 215 D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-------------~l~s~~~d~~i~vw~~ 281 (345)
T 3fm0_A 215 DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG-------------ALATACGDDAIRVFQE 281 (345)
T ss_dssp TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTC-------------CEEEEETTSCEEEEEE
T ss_pred CCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCC-------------EEEEEeCCCeEEEEEe
Confidence 9999999974321 2345566665 889999999999998 7999999999999998
Q ss_pred CCCC
Q 012007 453 SEHA 456 (473)
Q Consensus 453 ~~~~ 456 (473)
....
T Consensus 282 ~~~~ 285 (345)
T 3fm0_A 282 DPNS 285 (345)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 7654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-37 Score=284.04 Aligned_cols=253 Identities=17% Similarity=0.226 Sum_probs=207.3
Q ss_pred cccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeec
Q 012007 155 SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRH 234 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
..+.+|.+.|.+++|+|+|++|++|+.|+.|+|||+........ ..+.+|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~------------------------------~~l~gH 52 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLI------------------------------DTLTGH 52 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCC------------------------------EEECCC
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEE------------------------------EEEccc
Confidence 45678999999999999999999999999999999975421111 112259
Q ss_pred cCCeeEEEEcC--CCCEEEEEeCCCCEEEEEcCCCe--eeEEeecCCCceeEEEEcCC--C-EEEEEeCCCcEEEEeCcc
Q 012007 235 YDAVSCLSLNA--EQGLLYSGSWDKTLKVWRISDCK--CLESINAHDDAINSVVAGFD--S-LVFTGSADGTVKVWRREL 307 (473)
Q Consensus 235 ~~~v~~l~~~~--~~~~l~s~s~dg~v~vwd~~~~~--~~~~~~~~~~~v~~l~~~~~--~-~l~s~~~dg~i~vwd~~~ 307 (473)
.+.|.+++|++ ++++|++|+.|++|++||+++++ .+..+..|...|.+++|+|+ + +|++++.|+.|++||++.
T Consensus 53 ~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~ 132 (297)
T 2pm7_B 53 EGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKE 132 (297)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCS
T ss_pred cCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecC
Confidence 99999999986 38999999999999999998874 56677889999999999996 4 899999999999999974
Q ss_pred cCCCcceeeeeeeccCCccEEEEEEccC-------------CCEEEEeCCCCcEEEEecCCccc---ccceeecCcceEE
Q 012007 308 QGKGTKHCLAQVLLKHENAVTALAVNQE-------------SAVVYCGSSDGLVNFWECEKHLS---HGGVLRGHKMAVL 371 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~-------------~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~ 371 (473)
... .....+.+|...|.+++|+|+ +++|++|+.|+.|++||+++... ....+.+|...|.
T Consensus 133 ~~~----~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~ 208 (297)
T 2pm7_B 133 NGT----TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR 208 (297)
T ss_dssp SSC----BCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE
T ss_pred CCc----eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceE
Confidence 321 113456789999999999997 57999999999999999976432 3346778999998
Q ss_pred EEEec-----CCEEEEEeCCCcEEEEecCCCCceeEEEEe--cCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCC
Q 012007 372 CLAAA-----GNLVFSGSADRNICLWRREESGAHSCLAVL--TGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLD 444 (473)
Q Consensus 372 ~~~~~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~D 444 (473)
+++++ +.+|++|+.|++|+|||+...........+ ..|...|.+++|+|++. +|++++.|
T Consensus 209 ~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-------------~las~~~D 275 (297)
T 2pm7_B 209 DVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-------------VLALSGGD 275 (297)
T ss_dssp EEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC-------------CEEEEETT
T ss_pred EEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCC-------------EEEEEcCC
Confidence 87764 378999999999999999863221222333 57889999999999998 89999999
Q ss_pred CcEEEEEcCC
Q 012007 445 KSVKVWRVSE 454 (473)
Q Consensus 445 g~v~iW~i~~ 454 (473)
|.|+||+...
T Consensus 276 ~~v~lw~~~~ 285 (297)
T 2pm7_B 276 NKVTLWKENL 285 (297)
T ss_dssp SCEEEEEECT
T ss_pred CcEEEEEECC
Confidence 9999999864
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-37 Score=298.55 Aligned_cols=280 Identities=17% Similarity=0.232 Sum_probs=227.1
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecccc
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLP 205 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 205 (473)
.+.+++++|++|+.||.|++||.. +....+.+|.+.|.+++|+|++++|++|+.||.|++||+.+++......
T Consensus 104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~----- 178 (420)
T 3vl1_A 104 TAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI----- 178 (420)
T ss_dssp EECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE-----
T ss_pred EEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc-----
Confidence 345679999999999999999965 3455567899999999999999999999999999999998876543322
Q ss_pred ccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec---CCCceeE
Q 012007 206 TFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA---HDDAINS 282 (473)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~---~~~~v~~ 282 (473)
+|...|.+++|+|++++|++++.|+.|++||+++++.+..+.. +...+.+
T Consensus 179 ---------------------------~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~ 231 (420)
T 3vl1_A 179 ---------------------------GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNS 231 (420)
T ss_dssp ---------------------------CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEE
T ss_pred ---------------------------CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccE
Confidence 4999999999999999999999999999999999999988875 3344444
Q ss_pred E---------------------EEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCC-EE
Q 012007 283 V---------------------VAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESA-VV 339 (473)
Q Consensus 283 l---------------------~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l 339 (473)
+ +|+|++ +|++++.||.|++||++.. .........|...|++++|+|++. +|
T Consensus 232 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l 306 (420)
T 3vl1_A 232 IALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK-----EQTIQLPSKFTCSCNSLTVDGNNANYI 306 (420)
T ss_dssp EEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC-----CEEEEECCTTSSCEEEEEECSSCTTEE
T ss_pred EEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC-----ceeEEcccccCCCceeEEEeCCCCCEE
Confidence 4 456777 8999999999999999743 334444557889999999999998 99
Q ss_pred EEeCCCCcEEEEecCCcccccceeec-CcceEEEEE-ecCCEEEEEeCCCcEEEEecCCCCcee------EEEEecCCCC
Q 012007 340 YCGSSDGLVNFWECEKHLSHGGVLRG-HKMAVLCLA-AAGNLVFSGSADRNICLWRREESGAHS------CLAVLTGHTG 411 (473)
Q Consensus 340 ~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~------~~~~~~~h~~ 411 (473)
++++.||.|++||+++.......+.+ |...+.++. +++++|++++.|+.|++|++....... ....+.+|.+
T Consensus 307 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (420)
T 3vl1_A 307 YAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDD 386 (420)
T ss_dssp EEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSC
T ss_pred EEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCc
Confidence 99999999999999987654455555 666676654 468899999999999999988743221 1234567889
Q ss_pred ceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 412 PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 412 ~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
.|.+++|+|++.. ++ .+++++.+|.+.+|++..
T Consensus 387 ~v~~~~~s~~~~~--------~g--~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 387 AVSQFCYVSDDES--------NG--EVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CCCEEEEECCSSS--------SC--EEEEEETTTEEEEEESCC
T ss_pred ceEEEEEccCCCC--------cc--eEEEEcCCceEEEEeccC
Confidence 9999999999861 01 366667789999999875
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=282.90 Aligned_cols=285 Identities=21% Similarity=0.335 Sum_probs=240.1
Q ss_pred cceeeeeeecccEEEEEe-cCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 114 GLIGSIVRKEGHIYSLAA-SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~-~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
.+...+.+|.+.|.++.+ ++++|++|+.||.|++||.. +....+..|...|.+++|+|++++|++|+.||.|++|++
T Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~ 88 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPL 88 (313)
T ss_dssp EEEEEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred HHHHHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEe
Confidence 567889999999999885 68899999999999999965 345667789999999999999999999999999999999
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL 270 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~ 270 (473)
......... ....+|...|.++.| ++++|++++.|+.|++|| .++.+
T Consensus 89 ~~~~~~~~~-----------------------------~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~ 135 (313)
T 3odt_A 89 FATSGEDPL-----------------------------YTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLV 135 (313)
T ss_dssp TCCTTSCC------------------------------CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEE
T ss_pred eecCCCCcc-----------------------------cchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEE
Confidence 765321100 111248999999999 578999999999999999 77888
Q ss_pred EEeecCCCceeEEEEcC-C-CEEEEEeCCCcEEEEeCcccCCCcceeeeeeecc-CCccEEEEEEccCCCEEEEeCCCCc
Q 012007 271 ESINAHDDAINSVVAGF-D-SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLK-HENAVTALAVNQESAVVYCGSSDGL 347 (473)
Q Consensus 271 ~~~~~~~~~v~~l~~~~-~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~dg~ 347 (473)
..+..|...+.++.+.+ + ..+++++.||.|++||... ....+.. |...|.+++|+|++. +++++.||.
T Consensus 136 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~ 206 (313)
T 3odt_A 136 YNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK--------VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGL 206 (313)
T ss_dssp EEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE--------EEEEECSSCSSCEEEEEEEETTE-EEEEETTSE
T ss_pred EecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc--------eEEEEeccCcccEEEEEEcCCCe-EEEccCCCe
Confidence 89999999999999877 4 4999999999999999431 2233334 889999999999988 889999999
Q ss_pred EEEEecCCcccccceeecCcceEEEEEec--CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCC
Q 012007 348 VNFWECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHD 425 (473)
Q Consensus 348 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 425 (473)
|++||+++... ...+.+|...+.++.+. + .|++++.||.|++||+.+ .+++..+..|...|.+++|+|++.
T Consensus 207 i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~---~~~~~~~~~~~~~i~~~~~~~~~~-- 279 (313)
T 3odt_A 207 IKLVDMHTGDV-LRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKEN---GSLKQVITLPAISIWSVDCMSNGD-- 279 (313)
T ss_dssp EEEEETTTCCE-EEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTT---CCEEEEEECSSSCEEEEEECTTSC--
T ss_pred EEEEECCchhh-hhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCC---CceeEEEeccCceEEEEEEccCCC--
Confidence 99999987543 45667899889888765 5 799999999999999998 567888889999999999999986
Q ss_pred cccccCCCccEEEEEeeCCCcEEEEEcCCCCCCc
Q 012007 426 HEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDL 459 (473)
Q Consensus 426 ~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~ 459 (473)
+++++.||.|++|++..+....
T Consensus 280 ------------~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 280 ------------IIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp ------------EEEEETTSCEEEEESCGGGCCC
T ss_pred ------------EEEEeCCCcEEEEeCCCCceee
Confidence 5678999999999998775443
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-37 Score=288.05 Aligned_cols=251 Identities=16% Similarity=0.268 Sum_probs=215.5
Q ss_pred ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeE
Q 012007 152 KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231 (473)
Q Consensus 152 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (473)
+....+.+|.+.|.+++|+|++++|++|+.||.|++||+.+++......
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~------------------------------- 94 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP------------------------------- 94 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-------------------------------
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEee-------------------------------
Confidence 3456788999999999999999999999999999999998876543332
Q ss_pred eeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC----eeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcc
Q 012007 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC----KCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRREL 307 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~----~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~ 307 (473)
.|...|.+++|+|++++|++|+.|+.|++||+.+. +....+.+|...|.++.|.+++.+++++.|+.|++||++.
T Consensus 95 -~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~ 173 (340)
T 1got_B 95 -LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 173 (340)
T ss_dssp -CSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred -cCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCC
Confidence 38889999999999999999999999999999865 4567788999999999999999999999999999999963
Q ss_pred cCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeC
Q 012007 308 QGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSA 385 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~ 385 (473)
+ .....+.+|...|.+++|+|++++|++|+.|+.|++||+++... ...+.+|...|.++. +++++|++|+.
T Consensus 174 ~------~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~-~~~~~~h~~~v~~v~~~p~~~~l~s~s~ 246 (340)
T 1got_B 174 G------QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC-RQTFTGHESDINAICFFPNGNAFATGSD 246 (340)
T ss_dssp T------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE-EEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred C------cEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCee-EEEEcCCcCCEEEEEEcCCCCEEEEEcC
Confidence 2 24566788999999999999999999999999999999987543 356778888887665 56999999999
Q ss_pred CCcEEEEecCCCCceeEEEEec--CCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 386 DRNICLWRREESGAHSCLAVLT--GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 386 dg~i~iwd~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
||+|++||++.. ..+..+. .+...|++++|+|++. +|++|+.||.|++||+.....
T Consensus 247 d~~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~s~~g~-------------~l~~g~~d~~i~vwd~~~~~~ 304 (340)
T 1got_B 247 DATCRLFDLRAD---QELMTYSHDNIICGITSVSFSKSGR-------------LLLAGYDDFNCNVWDALKADR 304 (340)
T ss_dssp TSCEEEEETTTT---EEEEEECCTTCCSCEEEEEECTTSS-------------EEEEEETTSEEEEEETTTCCE
T ss_pred CCcEEEEECCCC---cEEEEEccCCcccceEEEEECCCCC-------------EEEEECCCCeEEEEEcccCcE
Confidence 999999999873 4444443 3445799999999998 899999999999999987654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=295.13 Aligned_cols=280 Identities=20% Similarity=0.326 Sum_probs=225.4
Q ss_pred EEEec-CCEEEEeeCCCcEEEeeCCc--ccc--ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeec
Q 012007 128 SLAAS-GDLLYTGSDSKNIRVWKNLK--EFS--GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 128 ~~~~~-g~~l~tg~~dg~i~vwd~~~--~~~--~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 202 (473)
.++|+ +++||+|. |++|+|||... ... .+.+|...|++|+|+|+|++|++|+.||.|++||+.+++......
T Consensus 110 ~l~wS~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~-- 186 (420)
T 4gga_A 110 LVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT-- 186 (420)
T ss_dssp CEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--
T ss_pred eEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEe--
Confidence 45554 56888876 89999999763 233 345688899999999999999999999999999999886544332
Q ss_pred cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC-CeeeEEeecCCCcee
Q 012007 203 SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD-CKCLESINAHDDAIN 281 (473)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~~~v~ 281 (473)
+|...+.++.++ +.+|++|+.|+.+++||... ...+..+.+|...+.
T Consensus 187 ------------------------------~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~ 234 (420)
T 4gga_A 187 ------------------------------SHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC 234 (420)
T ss_dssp ------------------------------CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred ------------------------------CCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEeccccccee
Confidence 488899988875 58999999999999999876 455678899999999
Q ss_pred EEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC-CEEEE--eCCCCcEEEEecCCcc
Q 012007 282 SVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES-AVVYC--GSSDGLVNFWECEKHL 357 (473)
Q Consensus 282 ~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~--~~~dg~i~iwd~~~~~ 357 (473)
.+.+.+++ ++++++.|+.+++|+...... ..........|...|.+++|+|.+ .++++ |+.|+.|++||+.++.
T Consensus 235 ~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~--~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~ 312 (420)
T 4gga_A 235 GLRWAPDGRHLASGGNDNLVNVWPSAPGEG--GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA 312 (420)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESSCCSS--CSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE
T ss_pred eeeecCCCCeeeeeeccccceEEeeccccc--cceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc
Confidence 99999988 899999999999999975432 233445677899999999999965 45554 5689999999999876
Q ss_pred cccceeecCcceEEEEEecCCEEEEEe--CCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCcc
Q 012007 358 SHGGVLRGHKMAVLCLAAAGNLVFSGS--ADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQR 435 (473)
Q Consensus 358 ~~~~~~~~~~~~v~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~ 435 (473)
...............+.++++.+++++ .|+.|+|||+.+ .+++..+.+|.+.|++++|+|++.
T Consensus 313 ~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~---~~~v~~l~gH~~~V~~l~~spdg~------------ 377 (420)
T 4gga_A 313 CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT---MAKVAELKGHTSRVLSLTMSPDGA------------ 377 (420)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT---CCEEEEECCCSSCEEEEEECTTSS------------
T ss_pred cceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCC---CcEEEEEcCCCCCEEEEEEcCCCC------------
Confidence 554333333333345567788887765 799999999998 678899999999999999999998
Q ss_pred EEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 436 WTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 436 ~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
+|+||+.||+|+|||+.+..+..+
T Consensus 378 -~l~S~s~D~tvriWdv~~~~~~~~ 401 (420)
T 4gga_A 378 -TVASAAADETLRLWRCFELDPARR 401 (420)
T ss_dssp -CEEEEETTTEEEEECCSCSSCC--
T ss_pred -EEEEEecCCeEEEEECCCCCccch
Confidence 899999999999999987655433
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-37 Score=291.77 Aligned_cols=289 Identities=16% Similarity=0.218 Sum_probs=231.0
Q ss_pred eeeeeeecccEEEEEec--CC-EEEEeeC---CCcEEEeeCCccc---cccccCcccEEEEEEeCC---CCEEEEEeCCC
Q 012007 116 IGSIVRKEGHIYSLAAS--GD-LLYTGSD---SKNIRVWKNLKEF---SGFKSNSGLVKAIIISGD---SNKIFTGHQDG 183 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~--g~-~l~tg~~---dg~i~vwd~~~~~---~~~~~h~~~V~~l~~s~~---~~~l~s~~~dg 183 (473)
...+.+|.+.|.+++++ +. ++++|+. ||.|+|||..... ....+|...|.+++|+|+ +++|++|+.||
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 34567899999999876 53 5667766 9999999976322 223368999999999998 69999999999
Q ss_pred eEEEEeCCCCC-eeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEE------cCCCCEEEEEeCC
Q 012007 184 KIRIWKVSRKN-ASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL------NAEQGLLYSGSWD 256 (473)
Q Consensus 184 ~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~------~~~~~~l~s~s~d 256 (473)
.|++||+.+++ ..... .+|...|.+++| ++++++|++++.|
T Consensus 91 ~i~iwd~~~~~~~~~~~--------------------------------~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d 138 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSV--------------------------------KGHKEIINAIDGIGGLGIGEGAPEIVTGSRD 138 (357)
T ss_dssp CEEEECTTSCSSCSEEE--------------------------------CCCSSCEEEEEEESGGGCC-CCCEEEEEETT
T ss_pred eEEEEeCCCCCccEEEE--------------------------------EecccceEEEeeccccccCCCccEEEEEeCC
Confidence 99999998876 22211 148999999955 6789999999999
Q ss_pred CCEEEEEcCCCe-eeEEeecCCC----ceeEEE----EcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCcc
Q 012007 257 KTLKVWRISDCK-CLESINAHDD----AINSVV----AGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENA 326 (473)
Q Consensus 257 g~v~vwd~~~~~-~~~~~~~~~~----~v~~l~----~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
+.|++||+++++ .+..+..|.. .+.++. +++++ ++++++.||.|++||++... . .....|...
T Consensus 139 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~--~~~~~~~~~ 211 (357)
T 3i2n_A 139 GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA-----L--RWETNIKNG 211 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-----E--EEEEECSSC
T ss_pred CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-----e--eeecCCCCc
Confidence 999999999887 6777766554 788888 56666 89999999999999997432 1 334678899
Q ss_pred EEEEEEcc---CCCEEEEeCCCCcEEEEecCCcccccce----eecCcceEEEEEe--cCC-EEEEEeCCCcEEEEecCC
Q 012007 327 VTALAVNQ---ESAVVYCGSSDGLVNFWECEKHLSHGGV----LRGHKMAVLCLAA--AGN-LVFSGSADRNICLWRREE 396 (473)
Q Consensus 327 v~~l~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~~v~~~~~--~~~-~l~s~~~dg~i~iwd~~~ 396 (473)
|.+++|+| ++.+|++++.||.|++||+++....... ..+|...+.++.+ ++. +|++|+.||.|++||+..
T Consensus 212 v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 212 VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp EEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred eEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence 99999999 9999999999999999999875443222 2378888877665 466 899999999999999986
Q ss_pred CCce----------------eEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEE-EeeCCCcEEEEEcCCCC
Q 012007 397 SGAH----------------SCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVY-SGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 397 ~~~~----------------~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~-s~s~Dg~v~iW~i~~~~ 456 (473)
.... .++..+.+|...|++++|+|++. +|+ +++.||.|+||++.+..
T Consensus 292 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------------~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 292 PIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKR-------------GLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp CSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSST-------------TEEEEEETTSEEEEEEECC--
T ss_pred CcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCC-------------eEEEEecCCCcEEEEECCCcc
Confidence 4322 57888999999999999999998 566 89999999999998654
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-38 Score=302.83 Aligned_cols=283 Identities=14% Similarity=0.237 Sum_probs=231.2
Q ss_pred EEEecCC-EEEEe----------eCCCcEEEeeCCcc----ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q 012007 128 SLAASGD-LLYTG----------SDSKNIRVWKNLKE----FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSR 192 (473)
Q Consensus 128 ~~~~~g~-~l~tg----------~~dg~i~vwd~~~~----~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~ 192 (473)
+++++|+ +|++| +.||.|+|||.... ......|...|.+++|+|++++|++|+.||.|++||+..
T Consensus 19 ~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~ 98 (416)
T 2pm9_A 19 AWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNE 98 (416)
T ss_dssp CBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSS
T ss_pred eeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeeccc
Confidence 3445665 89999 89999999997632 223345889999999999999999999999999999987
Q ss_pred CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC-CCEEEEEeCCCCEEEEEcCCCe---
Q 012007 193 KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCK--- 268 (473)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~v~vwd~~~~~--- 268 (473)
....... .....+|...|.+++|+|+ +.+|++++.|+.|++||+.+++
T Consensus 99 ~~~~~~~----------------------------~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 99 ANNAINS----------------------------MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESP 150 (416)
T ss_dssp TTSCCCE----------------------------EEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCT
T ss_pred ccccccc----------------------------hhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence 2110000 0111249999999999998 8999999999999999999876
Q ss_pred ---eeEE---eecCCCceeEEEEcCC-C-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccC------CccEEEEEEcc
Q 012007 269 ---CLES---INAHDDAINSVVAGFD-S-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKH------ENAVTALAVNQ 334 (473)
Q Consensus 269 ---~~~~---~~~~~~~v~~l~~~~~-~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~------~~~v~~l~~~~ 334 (473)
.... +..|...|.+++|+++ + ++++++.||.|++||++... ....+..+ ...|.+++|+|
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 151 SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK------EVIHLSYTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp TTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE------EEEEECCCCCSSCCCCCEEEEEECS
T ss_pred ccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC------cceEEeccccccccCCceEEEEECC
Confidence 3333 3678999999999998 3 89999999999999997432 22333333 78999999999
Q ss_pred CC-CEEEEeCCCC---cEEEEecCCcccccceee-cCcceEEEEEe---cCCEEEEEeCCCcEEEEecCCCCceeEEEEe
Q 012007 335 ES-AVVYCGSSDG---LVNFWECEKHLSHGGVLR-GHKMAVLCLAA---AGNLVFSGSADRNICLWRREESGAHSCLAVL 406 (473)
Q Consensus 335 ~~-~~l~~~~~dg---~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 406 (473)
++ .+|++++.|+ .|++||+++.......+. +|...+.++.+ ++++|++++.||.|++||+.+ .+++..+
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~---~~~~~~~ 301 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES---AEQLSQF 301 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS---CCEEEEE
T ss_pred CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC---Cccceee
Confidence 97 6899999998 999999998655556676 89888887775 689999999999999999988 5778888
Q ss_pred cCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCc
Q 012007 407 TGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDL 459 (473)
Q Consensus 407 ~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~ 459 (473)
.+|...|++++|+|++.. +|++++.||.|++|++.......
T Consensus 302 ~~~~~~v~~~~~s~~~~~------------~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 302 PARGNWCFKTKFAPEAPD------------LFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp ECSSSCCCCEEECTTCTT------------EEEECCSSSEEEEEESCCCCCSS
T ss_pred cCCCCceEEEEECCCCCC------------EEEEEecCCcEEEEEccCCCCCc
Confidence 999999999999999832 89999999999999998876443
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-38 Score=305.49 Aligned_cols=287 Identities=14% Similarity=0.165 Sum_probs=237.6
Q ss_pred eecccEEEEEe--cCCEEEEeeCCCcEEEeeCCc------cccccccCcccEEEEEEeCC-CCEEEEEeCCCeEEEEeCC
Q 012007 121 RKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK------EFSGFKSNSGLVKAIIISGD-SNKIFTGHQDGKIRIWKVS 191 (473)
Q Consensus 121 ~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~------~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~vwd~~ 191 (473)
.|.+.|.++++ ++++|++|+.||.|++||... .+..+.+|.+.|.+++|+|+ +++|++++.||.|++||+.
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 57888988886 588999999999999999764 56678889999999999998 8999999999999999998
Q ss_pred CCCe------eeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC-CCEEEEEeCCCCEEEEEc
Q 012007 192 RKNA------SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRI 264 (473)
Q Consensus 192 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~v~vwd~ 264 (473)
+.+. ..... ....|...|.+++|+|+ +.+|++++.|+.|++||+
T Consensus 145 ~~~~~~~~~~~~~~~-----------------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~ 195 (416)
T 2pm9_A 145 KCTESPSNYTPLTPG-----------------------------QSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDL 195 (416)
T ss_dssp TTSSCTTTCCCBCCC-----------------------------CSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEET
T ss_pred CCccccccccccccc-----------------------------cccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEEC
Confidence 8751 11110 01148899999999998 789999999999999999
Q ss_pred CCCeeeEEeecC------CCceeEEEEcCCC--EEEEEeCCC---cEEEEeCcccCCCcceeeeeeec-cCCccEEEEEE
Q 012007 265 SDCKCLESINAH------DDAINSVVAGFDS--LVFTGSADG---TVKVWRRELQGKGTKHCLAQVLL-KHENAVTALAV 332 (473)
Q Consensus 265 ~~~~~~~~~~~~------~~~v~~l~~~~~~--~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~ 332 (473)
++++.+..+..+ ...|.+++|+|++ ++++++.|+ .|++||++... .....+. .|...|++++|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-----~~~~~~~~~~~~~v~~~~~ 270 (416)
T 2pm9_A 196 KAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-----TPLQTLNQGHQKGILSLDW 270 (416)
T ss_dssp TTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-----SCSBCCCSCCSSCEEEEEE
T ss_pred CCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-----CCcEEeecCccCceeEEEe
Confidence 999999988876 7899999999986 899999998 99999997432 2344555 79999999999
Q ss_pred cc-CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecC-CEEEEEeCCCcEEEEecCCCCceeEE-----
Q 012007 333 NQ-ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAG-NLVFSGSADRNICLWRREESGAHSCL----- 403 (473)
Q Consensus 333 ~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~----- 403 (473)
+| ++.+|++++.||.|++||+++... ...+.+|...+.++. +++ .+|++++.|+.|++|++.........
T Consensus 271 s~~~~~~l~s~~~dg~v~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~ 349 (416)
T 2pm9_A 271 CHQDEHLLLSSGRDNTVLLWNPESAEQ-LSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETET 349 (416)
T ss_dssp CSSCSSCEEEEESSSEEEEECSSSCCE-EEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-----
T ss_pred CCCCCCeEEEEeCCCCEEEeeCCCCcc-ceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccc
Confidence 99 899999999999999999987644 356677887776555 556 89999999999999999874321111
Q ss_pred ---------------------------EEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 404 ---------------------------AVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 404 ---------------------------~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
.....|..++.+++|+|+++ +|++++.||.|+||++...
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-------------~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 350 KQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGK-------------LVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp -----------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTE-------------EECBCTTSSCBCCBCCCCC
T ss_pred cccCCcccccccccccccccccccccccCCccccCCccceEEeeCCe-------------EEEEeCCCCeEEEEEeccC
Confidence 00112677889999999998 8999999999999998764
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-38 Score=300.63 Aligned_cols=292 Identities=15% Similarity=0.129 Sum_probs=218.8
Q ss_pred eeecccEEEEEe--cCCEEEEeeCCCcEEEeeCC----ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Q 012007 120 VRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL----KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRK 193 (473)
Q Consensus 120 ~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~----~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~ 193 (473)
..|.+.|.++++ +|++||+|+.||.|+|||.. +.+..+.+|.+.|.+++|+|++++|++|+.||.|++||+.++
T Consensus 8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~ 87 (377)
T 3dwl_C 8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD 87 (377)
T ss_dssp EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence 335566766665 58999999999999999865 456788899999999999999999999999999999999876
Q ss_pred C-eeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe---e
Q 012007 194 N-ASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK---C 269 (473)
Q Consensus 194 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~---~ 269 (473)
. ..... ...+|...|.+++|+|++++|++|+.|+.|++||+++++ .
T Consensus 88 ~~~~~~~------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 137 (377)
T 3dwl_C 88 GTWKQTL------------------------------VLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWV 137 (377)
T ss_dssp -CCCCEE------------------------------ECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCC
T ss_pred Cceeeee------------------------------EecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccccee
Confidence 5 11111 112489999999999999999999999999999999887 4
Q ss_pred eEEeec-CCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCC------------cceeeeeeeccCCccEEEEEEccC
Q 012007 270 LESINA-HDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG------------TKHCLAQVLLKHENAVTALAVNQE 335 (473)
Q Consensus 270 ~~~~~~-~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~------------~~~~~~~~~~~~~~~v~~l~~~~~ 335 (473)
...+.. |...|.+++|+|++ +|++++.|+.|++||++..... ........+ .|...|.+++|+|+
T Consensus 138 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~ 216 (377)
T 3dwl_C 138 SKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPS 216 (377)
T ss_dssp CEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTT
T ss_pred eeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCC
Confidence 677777 99999999999987 8999999999999998632211 112333444 89999999999999
Q ss_pred CCEEEEeCCCCcEEEEecCCcccc---cceeecCcceEEEE--EecCCEEEEEeCCCcEEEEecCCCCc-----------
Q 012007 336 SAVVYCGSSDGLVNFWECEKHLSH---GGVLRGHKMAVLCL--AAAGNLVFSGSADRNICLWRREESGA----------- 399 (473)
Q Consensus 336 ~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~----------- 399 (473)
+++|++++.||.|++||+++.... ...+.+|...+.++ ++++++|++|+.|+.+ +|+....+.
T Consensus 217 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 295 (377)
T 3dwl_C 217 GNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTS 295 (377)
T ss_dssp SSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCC
T ss_pred CCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccc
Confidence 999999999999999999886541 45677888877655 5679999998866655 776652110
Q ss_pred ----------------e---------eEEE-------------EecCCCCceeEEEEecCCCCCcccccCCCccEEEEEe
Q 012007 400 ----------------H---------SCLA-------------VLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG 441 (473)
Q Consensus 400 ----------------~---------~~~~-------------~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~ 441 (473)
. ..+. ....|.+.|+++++.+... .....|+||
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~---------~~~~~~~s~ 366 (377)
T 3dwl_C 296 KTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTP---------GNITAFTSS 366 (377)
T ss_dssp CCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEET---------TEEEEEEEE
T ss_pred ccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCC---------CceEEEEee
Confidence 0 0000 1123999999999877643 111259999
Q ss_pred eCCCcEEEEEc
Q 012007 442 SLDKSVKVWRV 452 (473)
Q Consensus 442 s~Dg~v~iW~i 452 (473)
|.||.|+|||+
T Consensus 367 g~Dg~i~iWdl 377 (377)
T 3dwl_C 367 GTDGRVVLWTL 377 (377)
T ss_dssp ETTSEEEEECC
T ss_pred cCCCcEEEecC
Confidence 99999999986
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=292.75 Aligned_cols=280 Identities=17% Similarity=0.254 Sum_probs=234.3
Q ss_pred eeecccEEEEEec--CC-EEEEeeCCCcEEEeeC----Cccc--------ccccc----------CcccEEEEEEeCCCC
Q 012007 120 VRKEGHIYSLAAS--GD-LLYTGSDSKNIRVWKN----LKEF--------SGFKS----------NSGLVKAIIISGDSN 174 (473)
Q Consensus 120 ~~h~~~V~~~~~~--g~-~l~tg~~dg~i~vwd~----~~~~--------~~~~~----------h~~~V~~l~~s~~~~ 174 (473)
..|.+.|.+++++ |+ +||+|+.||.|++|++ .... ..+.. |.+.|.+++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 3455888887765 77 9999999999999998 4222 22222 678999999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe
Q 012007 175 KIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS 254 (473)
Q Consensus 175 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s 254 (473)
+|++|+.||.|++||. ++...... .+|...|.+++|+|++++|++++
T Consensus 122 ~l~~~~~dg~i~i~~~-~~~~~~~~--------------------------------~~~~~~v~~~~~~~~~~~l~~~~ 168 (425)
T 1r5m_A 122 SIVTGVENGELRLWNK-TGALLNVL--------------------------------NFHRAPIVSVKWNKDGTHIISMD 168 (425)
T ss_dssp EEEEEETTSCEEEEET-TSCEEEEE--------------------------------CCCCSCEEEEEECTTSSEEEEEE
T ss_pred EEEEEeCCCeEEEEeC-CCCeeeec--------------------------------cCCCccEEEEEECCCCCEEEEEe
Confidence 9999999999999993 33322211 13889999999999999999999
Q ss_pred CCCCEEEEEcCCCeeeEEeecCCCc---------------eeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeee
Q 012007 255 WDKTLKVWRISDCKCLESINAHDDA---------------INSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQV 319 (473)
Q Consensus 255 ~dg~v~vwd~~~~~~~~~~~~~~~~---------------v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 319 (473)
.|+.|++||+.+++.+..+..+... +.++.|++++.+++++.||.|++||++.. .....
T Consensus 169 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~------~~~~~ 242 (425)
T 1r5m_A 169 VENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK------TPTGK 242 (425)
T ss_dssp TTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCS------SCSEE
T ss_pred cCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCC------ceeee
Confidence 9999999999999999999888776 99999999999999999999999999743 23455
Q ss_pred eccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCC
Q 012007 320 LLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREES 397 (473)
Q Consensus 320 ~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~ 397 (473)
+..|...|.+++|+|++++|++++.||.|++||+++... ...+.+|...+.++.+ ++ +|++++.|+.|++||+.+
T Consensus 243 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~- 319 (425)
T 1r5m_A 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS-QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ- 319 (425)
T ss_dssp ECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC-SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT-
T ss_pred eccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc-ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC-
Confidence 668999999999999999999999999999999987543 3556678888877765 46 999999999999999988
Q ss_pred CceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 398 GAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 398 ~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
..++..+..|...|.+++|+|++. +|++++.||.|++|++....
T Consensus 320 --~~~~~~~~~~~~~i~~~~~s~~~~-------------~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 320 --NTLLALSIVDGVPIFAGRISQDGQ-------------KYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp --TEEEEEEECTTCCEEEEEECTTSS-------------EEEEEETTSCEEEEECHHHH
T ss_pred --CcEeEecccCCccEEEEEEcCCCC-------------EEEEEECCCeEEEEECCCCc
Confidence 577888889999999999999998 89999999999999998765
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=279.74 Aligned_cols=257 Identities=19% Similarity=0.225 Sum_probs=206.0
Q ss_pred eeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC----ccccccccCcccEEEEEEeCC--CCEEEEEeCCCeEEE
Q 012007 116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL----KEFSGFKSNSGLVKAIIISGD--SNKIFTGHQDGKIRI 187 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~----~~~~~~~~h~~~V~~l~~s~~--~~~l~s~~~dg~i~v 187 (473)
+..+.+|.+.|.+++++ |++||+|+.|++|+|||.. +.+..+.+|.+.|.+++|+++ +++|++|+.||+|++
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 45678999999888764 8999999999999999964 456788999999999999864 889999999999999
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC--CCEEEEEeCCCCEEEEEcC
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE--QGLLYSGSWDKTLKVWRIS 265 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~s~s~dg~v~vwd~~ 265 (473)
||+.++....... ..+|...|.+++|+|+ +.+|++|+.|++|++||++
T Consensus 82 Wd~~~~~~~~~~~------------------------------~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~ 131 (297)
T 2pm7_B 82 WKEENGRWSQIAV------------------------------HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFK 131 (297)
T ss_dssp EEBSSSCBCCCEE------------------------------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBC
T ss_pred EEcCCCceEEEEE------------------------------eecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEec
Confidence 9998764211111 1138899999999997 8899999999999999998
Q ss_pred CCe--eeEEeecCCCceeEEEEcCC--------------CEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEE
Q 012007 266 DCK--CLESINAHDDAINSVVAGFD--------------SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTA 329 (473)
Q Consensus 266 ~~~--~~~~~~~~~~~v~~l~~~~~--------------~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~ 329 (473)
++. ....+.+|...|.++.|+|+ .+|++|+.|+.|++||++... ........+.+|...|.+
T Consensus 132 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~--~~~~~~~~l~~H~~~V~~ 209 (297)
T 2pm7_B 132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--QTYVLESTLEGHSDWVRD 209 (297)
T ss_dssp SSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT--TEEEEEEEECCCSSCEEE
T ss_pred CCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC--ceEEEEEEecCCCCceEE
Confidence 763 24567889999999999986 389999999999999987432 122345567899999999
Q ss_pred EEEccCC---CEEEEeCCCCcEEEEecCCcccc--ccee--ecCcceEEEE--EecCCEEEEEeCCCcEEEEecCCCCce
Q 012007 330 LAVNQES---AVVYCGSSDGLVNFWECEKHLSH--GGVL--RGHKMAVLCL--AAAGNLVFSGSADRNICLWRREESGAH 400 (473)
Q Consensus 330 l~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~--~~~~--~~~~~~v~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~ 400 (473)
++|+|++ .+|++++.|+.|++||++..... ...+ ..|...+.++ ++++++|++++.|+.|+||+....+.+
T Consensus 210 v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g~w 289 (297)
T 2pm7_B 210 VAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 289 (297)
T ss_dssp EEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred EEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCCcE
Confidence 9999984 89999999999999998763211 1122 4566677655 567999999999999999998754444
Q ss_pred eEEE
Q 012007 401 SCLA 404 (473)
Q Consensus 401 ~~~~ 404 (473)
.++.
T Consensus 290 ~~~~ 293 (297)
T 2pm7_B 290 EPAG 293 (297)
T ss_dssp EEC-
T ss_pred Eecc
Confidence 4443
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-36 Score=292.49 Aligned_cols=280 Identities=21% Similarity=0.435 Sum_probs=242.3
Q ss_pred cceeeeeeecccEEEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q 012007 114 GLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVS 191 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~ 191 (473)
..+..+.+|.+.|.++.+++++|++|+.||+|++||.. +.+..+.+|...|.+++|+ +++|++|+.||.|++||+.
T Consensus 150 ~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~ 227 (445)
T 2ovr_B 150 KCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIE 227 (445)
T ss_dssp CEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESS
T ss_pred cEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECC
Confidence 45677889999999999999999999999999999965 5567788999999999996 4589999999999999998
Q ss_pred CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeE
Q 012007 192 RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE 271 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~ 271 (473)
+++...... +|...|.+++| ++++|++|+.||.|++||+++++++.
T Consensus 228 ~~~~~~~~~--------------------------------~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~ 273 (445)
T 2ovr_B 228 TGQCLHVLM--------------------------------GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH 273 (445)
T ss_dssp SCCEEEEEE--------------------------------CCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEE
T ss_pred CCcEEEEEc--------------------------------CCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeE
Confidence 876543322 48899999999 77899999999999999999999999
Q ss_pred EeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEE
Q 012007 272 SINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFW 351 (473)
Q Consensus 272 ~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iw 351 (473)
.+..|...|.++.+ ....+++++.||.|++||++... ....+..|...+.++.++ +++|++++.||.|++|
T Consensus 274 ~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vw 344 (445)
T 2ovr_B 274 TLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGN------CIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIW 344 (445)
T ss_dssp EECCCSSCEEEEEE-CSSEEEEEETTSCEEEEETTTCC------EEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred EecCCCCceEEEEE-CCCEEEEEeCCCeEEEEECCCCC------EEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEE
Confidence 99999999999999 44599999999999999997432 345677889999988875 6699999999999999
Q ss_pred ecCCcccccceeec---CcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEe-----cCCCCceeEEEEecCCC
Q 012007 352 ECEKHLSHGGVLRG---HKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVL-----TGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 352 d~~~~~~~~~~~~~---~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~h~~~V~~l~~~~~~~ 423 (473)
|++++... ..+.+ |...+.++++++++|++|+.||.|++||+.++ +.+..+ .+|.+.|++++|+|++.
T Consensus 345 d~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 420 (445)
T 2ovr_B 345 DIKTGQCL-QTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTG---EFIRNLVTLESGGSGGVVWRIRASNTKL 420 (445)
T ss_dssp ETTTCCEE-EEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTC---CEEEEEEECTTGGGTCEEEEEEECSSEE
T ss_pred ECCCCcEE-EEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCC---ceeeeeeccccCCCCceEEEEEecCCEE
Confidence 99876543 34443 88899999999999999999999999999984 445554 47888999999999988
Q ss_pred CCcccccCCCccEEEEEeeCCCc----EEEEEcCCC
Q 012007 424 HDHEYHQKGDQRWTVYSGSLDKS----VKVWRVSEH 455 (473)
Q Consensus 424 ~~~~~~~~~~~~~~l~s~s~Dg~----v~iW~i~~~ 455 (473)
++++|+.||+ |.|||+...
T Consensus 421 -------------~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 421 -------------VCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp -------------EEEEECSSSSSCCEEEEEECCCC
T ss_pred -------------EEEEcccCCCCccEEEEEECCCC
Confidence 8999999998 999999865
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=282.43 Aligned_cols=257 Identities=22% Similarity=0.298 Sum_probs=205.9
Q ss_pred cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEe
Q 012007 153 EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKI 232 (473)
Q Consensus 153 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (473)
.+..+.+|.+.|.+++|+++ +|++|+.|+.|++||+..+......... ..
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~----------------------------~~ 55 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLD----------------------------ET 55 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEEC----------------------------TT
T ss_pred cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEe----------------------------cC
Confidence 45678899999999999988 9999999999999999865322111110 00
Q ss_pred eccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC-------CeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEe
Q 012007 233 RHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD-------CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWR 304 (473)
Q Consensus 233 ~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~-------~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd 304 (473)
+|...|.+++|+|++++|++|+.|++|++||+.. .+++..+.+|...|.+++|+|++ +|++|+.|+.|++||
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd 135 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 2889999999999999999999999999999853 45677889999999999999998 899999999999999
Q ss_pred CcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcc-cccceeecCcceEEEEEec----CCE
Q 012007 305 RELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHL-SHGGVLRGHKMAVLCLAAA----GNL 379 (473)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~----~~~ 379 (473)
++... ........+.+|...|.+++|+|++.+|++++.|+.|++||..... .....+.+|...|.++.++ +.+
T Consensus 136 ~~~~~--~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 213 (330)
T 2hes_X 136 TDESG--EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFR 213 (330)
T ss_dssp CCTTC--CCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCE
T ss_pred ccCCC--CCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeE
Confidence 95322 1223456678899999999999999999999999999999987542 3445778999999887764 568
Q ss_pred EEEEeCCCcEEEEecCCCC-----ceeEEEEecC-CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 380 VFSGSADRNICLWRREESG-----AHSCLAVLTG-HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 380 l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~-h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
|++|+.|++|++||+.... ...+...+.+ |...|.+++|++++ +|++++.||.|+||++.
T Consensus 214 l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--------------~l~s~~~dg~v~iw~~~ 279 (330)
T 2hes_X 214 LCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--------------LIASVGADGVLAVYEEV 279 (330)
T ss_dssp EEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--------------CEEEEETTSCEEEEEEE
T ss_pred EEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC--------------EEEEEeCCCEEEEEEcC
Confidence 9999999999999987521 1245556655 99999999999765 59999999999999987
Q ss_pred CC
Q 012007 454 EH 455 (473)
Q Consensus 454 ~~ 455 (473)
.+
T Consensus 280 ~~ 281 (330)
T 2hes_X 280 DG 281 (330)
T ss_dssp TT
T ss_pred CC
Confidence 65
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=275.68 Aligned_cols=276 Identities=20% Similarity=0.319 Sum_probs=221.4
Q ss_pred EEec-CCEEEEeeCCCcEEEeeCC--ccccc--cccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecc
Q 012007 129 LAAS-GDLLYTGSDSKNIRVWKNL--KEFSG--FKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGS 203 (473)
Q Consensus 129 ~~~~-g~~l~tg~~dg~i~vwd~~--~~~~~--~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 203 (473)
++|+ +++||+|. |++|+|||.. +.+.. +.+|...|.+++|+|++++|++|+.||.|++||+.+++......
T Consensus 31 l~WS~~~~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~--- 106 (318)
T 4ggc_A 31 VDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT--- 106 (318)
T ss_dssp EEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---
T ss_pred EEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEec---
Confidence 4444 34777765 8999999975 33343 45688899999999999999999999999999999886544332
Q ss_pred ccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC-eeeEEeecCCCceeE
Q 012007 204 LPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC-KCLESINAHDDAINS 282 (473)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~-~~~~~~~~~~~~v~~ 282 (473)
+|...+.++.+ ++..+++++.++.+++|+.... ..+..+.+|...+..
T Consensus 107 -----------------------------~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (318)
T 4ggc_A 107 -----------------------------SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCG 155 (318)
T ss_dssp -----------------------------CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEE
T ss_pred -----------------------------CccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEE
Confidence 37777776655 5689999999999999999765 556778899999999
Q ss_pred EEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCE---EEEeCCCCcEEEEecCCccc
Q 012007 283 VVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAV---VYCGSSDGLVNFWECEKHLS 358 (473)
Q Consensus 283 l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~---l~~~~~dg~i~iwd~~~~~~ 358 (473)
+.+.+++ ++++++.||.|++||++.+.. ..........+...|.+++++|++.. +++++.++.|++||.+....
T Consensus 156 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~ 233 (318)
T 4ggc_A 156 LRWAPDGRHLASGGNDNLVNVWPSAPGEG--GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC 233 (318)
T ss_dssp EEECTTSSEEEEEETTSCEEEEESSCBTT--BSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE
T ss_pred EEEcCCCCEEEEEecCcceeEEECCCCcc--cccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc
Confidence 9999887 899999999999999985442 23334556678889999999997643 34678899999999987655
Q ss_pred ccceeecCcceEEEEEecCCEEEEEe--CCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccE
Q 012007 359 HGGVLRGHKMAVLCLAAAGNLVFSGS--ADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRW 436 (473)
Q Consensus 359 ~~~~~~~~~~~v~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~ 436 (473)
.............++.+++..+++++ .|+.|++||+.+ .+++..+.+|.+.|++++|+|++.
T Consensus 234 ~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~---~~~~~~l~gH~~~V~~l~~spdg~------------- 297 (318)
T 4ggc_A 234 LSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT---MAKVAELKGHTSRVLSLTMSPDGA------------- 297 (318)
T ss_dssp EEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT---CCEEEEECCCSSCEEEEEECTTSS-------------
T ss_pred cccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCC---CcEEEEEcCCCCCEEEEEEcCCCC-------------
Confidence 54443334444566667788777654 799999999998 578899999999999999999998
Q ss_pred EEEEeeCCCcEEEEEcCCCCC
Q 012007 437 TVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 437 ~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
+|+|||.||+|+|||+.+..|
T Consensus 298 ~l~S~s~D~~v~iWd~~~~dP 318 (318)
T 4ggc_A 298 TVASAAADETLRLWRCFELDP 318 (318)
T ss_dssp CEEEEETTTEEEEECCSCCCC
T ss_pred EEEEEecCCeEEEEECCCCCC
Confidence 899999999999999987654
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-36 Score=283.79 Aligned_cols=290 Identities=13% Similarity=0.107 Sum_probs=215.2
Q ss_pred ccEEEEEe--cCCEEEEeeCCC-------cEEEeeCCcc------------ccccccCcccEEEEEEeCCCCEEEEEe--
Q 012007 124 GHIYSLAA--SGDLLYTGSDSK-------NIRVWKNLKE------------FSGFKSNSGLVKAIIISGDSNKIFTGH-- 180 (473)
Q Consensus 124 ~~V~~~~~--~g~~l~tg~~dg-------~i~vwd~~~~------------~~~~~~h~~~V~~l~~s~~~~~l~s~~-- 180 (473)
-+|++++| +|++|++||.|. .|++|++... ...+..|...|.+++++. +.+++|.
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~--~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK--GIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET--TEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC--CEEEEEECC
Confidence 35777665 688999998644 4999985421 123567888899988764 4777664
Q ss_pred ---------CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEE
Q 012007 181 ---------QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLY 251 (473)
Q Consensus 181 ---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 251 (473)
.|+.+++|++............ ........+...+.+++|+|||++|+
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~v~fSpDg~~la 149 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTS-----------------------VDFDASTNADDYTKLVYISREGTVAA 149 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEE-----------------------ECSSCCCCTTCCEEEEEECTTSSCEE
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeee-----------------------eceeecCCcccCEEEEEEcCCCCEEE
Confidence 4667888887655432211100 00001112556789999999999987
Q ss_pred EEe--CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEE
Q 012007 252 SGS--WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVT 328 (473)
Q Consensus 252 s~s--~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~ 328 (473)
+++ .|++|+|||+++++++..+. |...|.+++|+|++ ++++++ ++.+++|+...+ ..........|...|.
T Consensus 150 ~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~----~~~~~~~~~~~~~~v~ 223 (365)
T 4h5i_A 150 IASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTG----SCIARKTDFDKNWSLS 223 (365)
T ss_dssp EEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTC----CEEEEECCCCTTEEEE
T ss_pred EEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecc-ceeEEEEEeccC----cceeeeecCCCCCCEE
Confidence 654 78999999999999998886 77889999999998 666666 555666665432 2223345567889999
Q ss_pred EEEEccCCCEEEEeCCCC----cEEEEecCCccc---ccceeecCcceEEEE--EecCCEEEEEeCCCcEEEEecCCCCc
Q 012007 329 ALAVNQESAVVYCGSSDG----LVNFWECEKHLS---HGGVLRGHKMAVLCL--AAAGNLVFSGSADRNICLWRREESGA 399 (473)
Q Consensus 329 ~l~~~~~~~~l~~~~~dg----~i~iwd~~~~~~---~~~~~~~~~~~v~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~ 399 (473)
+++|+|++.++++++.|+ .+++|++..... ....+.+|...|.++ +|+|++||+|+.|++|+|||+.+
T Consensus 224 ~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~--- 300 (365)
T 4h5i_A 224 KINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD--- 300 (365)
T ss_dssp EEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT---
T ss_pred EEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC---
Confidence 999999999999998887 578888765332 123566788888665 46799999999999999999998
Q ss_pred eeEEEE-ecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 400 HSCLAV-LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 400 ~~~~~~-~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
.+++.. +.+|...|++|+|+||++ +|+|||.|++|+||++........
T Consensus 301 ~~~~~~~~~gH~~~V~~v~fSpdg~-------------~laS~S~D~tvrvw~ip~~~~~~~ 349 (365)
T 4h5i_A 301 LSMSKIFKQAHSFAITEVTISPDST-------------YVASVSAANTIHIIKLPLNYANYT 349 (365)
T ss_dssp TEEEEEETTSSSSCEEEEEECTTSC-------------EEEEEETTSEEEEEECCTTTTC--
T ss_pred CcEEEEecCcccCCEEEEEECCCCC-------------EEEEEeCCCeEEEEEcCCCCcCcc
Confidence 567766 579999999999999999 899999999999999976654433
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-36 Score=291.79 Aligned_cols=293 Identities=12% Similarity=0.142 Sum_probs=237.3
Q ss_pred ecccEEEEEec--CCEEEEeeCCCcEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeE
Q 012007 122 KEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVH 198 (473)
Q Consensus 122 h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 198 (473)
|.+.|.+++++ +++|++|+.||.|++||.. +.+..+..|...|.+++|+|++++|++++.||.|++||+.+++....
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 186 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQH 186 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE
Confidence 67889988875 8899999999999999954 45667888999999999999999999999999999999988765544
Q ss_pred EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCC
Q 012007 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDD 278 (473)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 278 (473)
.......... ............+.+++|++++ .+++++.|+.|++||+.+++.+..+..|..
T Consensus 187 ~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~ 248 (425)
T 1r5m_A 187 FELKETGGSS-----------------INAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHG 248 (425)
T ss_dssp ECCC--------------------------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSS
T ss_pred eeccccCccc-----------------eeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCC
Confidence 3321110000 0000001123338899999874 688999999999999999999999999999
Q ss_pred ceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcc
Q 012007 279 AINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHL 357 (473)
Q Consensus 279 ~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~ 357 (473)
.|.+++|++++ +|++++.||.|++||++... ....+..|...|.+++|+|++ ++++++.|+.|++||+++..
T Consensus 249 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~ 321 (425)
T 1r5m_A 249 PISVLEFNDTNKLLLSASDDGTLRIWHGGNGN------SQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNT 321 (425)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEECSSSBS------CSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTE
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCCc------cceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCc
Confidence 99999999988 89999999999999987432 345566789999999999999 99999999999999998754
Q ss_pred cccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCC-----------------ceeEEEEecCCCC--ceeEE
Q 012007 358 SHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESG-----------------AHSCLAVLTGHTG--PVKCL 416 (473)
Q Consensus 358 ~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~-----------------~~~~~~~~~~h~~--~V~~l 416 (473)
. ...+..|...+.++. +++++|++++.||.|++||+.+.. ...++..+.+|.. .|+++
T Consensus 322 ~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 400 (425)
T 1r5m_A 322 L-LALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDL 400 (425)
T ss_dssp E-EEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEE
T ss_pred E-eEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEE
Confidence 3 355667777776665 569999999999999999998721 0117888999976 99999
Q ss_pred EEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 417 AVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
+|+|++. +|++++.||.|++|++.
T Consensus 401 ~~s~~~~-------------~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 401 SWNCAGN-------------KISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EECTTSS-------------EEEEEESSSCCEEEECC
T ss_pred EccCCCc-------------eEEEEecCceEEEEeec
Confidence 9999998 89999999999999985
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-36 Score=278.31 Aligned_cols=250 Identities=23% Similarity=0.406 Sum_probs=212.7
Q ss_pred ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee
Q 012007 154 FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233 (473)
Q Consensus 154 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (473)
...+.+|.+.|.+++|+|++++|++|+.||.|++|++.+++...... +
T Consensus 16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--------------------------------~ 63 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--------------------------------G 63 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--------------------------------C
T ss_pred EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc--------------------------------c
Confidence 44678899999999999999999999999999999998776433221 4
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~ 312 (473)
|...|.+++|+|++++|++|+.|+.|++||+++++++..+..|...|.++.|+|++ +|++|+.|+.|++||++..
T Consensus 64 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---- 139 (312)
T 4ery_A 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---- 139 (312)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC----
T ss_pred CCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----
Confidence 88999999999999999999999999999999999999999999999999999987 8999999999999999743
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEE--EEEecCCEEEEEeCCCcEE
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVL--CLAAAGNLVFSGSADRNIC 390 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~s~~~dg~i~ 390 (473)
.....+..|...|.+++|+|++.+|++++.||.|++||+++..........+...+. ++++++++|++++.|+.|+
T Consensus 140 --~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 217 (312)
T 4ery_A 140 --KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 217 (312)
T ss_dssp --CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEE
T ss_pred --EEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEE
Confidence 234567789999999999999999999999999999999876655444445555554 4556799999999999999
Q ss_pred EEecCCCCceeEEEEecCCCCceeE--EEEe-cCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 391 LWRREESGAHSCLAVLTGHTGPVKC--LAVE-EDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 391 iwd~~~~~~~~~~~~~~~h~~~V~~--l~~~-~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
+||+.+ .+++..+.+|...+.+ ..+. +++. +|++|+.||.|++||+..++.
T Consensus 218 iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~l~sg~~dg~i~vwd~~~~~~ 271 (312)
T 4ery_A 218 LWDYSK---GKCLKTYTGHKNEKYCIFANFSVTGGK-------------WIVSGSEDNLVYIWNLQTKEI 271 (312)
T ss_dssp EEETTT---TEEEEEECSSCCSSSCCCEEEECSSSC-------------EEEECCTTSCEEEEETTTCCE
T ss_pred EEECCC---CcEEEEEEecCCceEEEEEEEEeCCCc-------------EEEEECCCCEEEEEECCCchh
Confidence 999998 5778888888765433 3344 4455 899999999999999987754
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=287.97 Aligned_cols=271 Identities=16% Similarity=0.199 Sum_probs=197.1
Q ss_pred EEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeC------CCeEEEEeCCCCCeeeEEeeccccccc
Q 012007 135 LLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQ------DGKIRIWKVSRKNASVHKRVGSLPTFK 208 (473)
Q Consensus 135 ~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~ 208 (473)
+++.++.+.....|++.. .....|...|.+++|+|||++|++|+. |+.|++|+..++......
T Consensus 18 ~~~~~~g~~~~~~w~~p~--~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~--------- 86 (357)
T 4g56_B 18 LYFQSNGSSKGSAWGRPV--TAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESL--------- 86 (357)
T ss_dssp ------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGG---------
T ss_pred eEEecCCCccccccCCCC--CCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeE---------
Confidence 344445567789998642 234569999999999999999999997 778999988765422111
Q ss_pred eeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeE----EeecCCCceeEEE
Q 012007 209 DYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE----SINAHDDAINSVV 284 (473)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~----~~~~~~~~v~~l~ 284 (473)
.....+|...|.+++|+|++. +++++.||+|+|||+.+++.+. ...+|...|.+++
T Consensus 87 -------------------~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~ 146 (357)
T 4g56_B 87 -------------------CTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLS 146 (357)
T ss_dssp -------------------CSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEE
T ss_pred -------------------ecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEE
Confidence 112235889999999999875 5567889999999998877543 3347999999999
Q ss_pred EcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC-CEEEEeCCCCcEEEEecCCcccccc-
Q 012007 285 AGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES-AVVYCGSSDGLVNFWECEKHLSHGG- 361 (473)
Q Consensus 285 ~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~- 361 (473)
|+|++ +|++|+.|+.|++||++. ......+..|...|++++|++++ .++++++.||.|++||++++.....
T Consensus 147 ~spdg~~l~sgs~dg~v~iwd~~~------~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~ 220 (357)
T 4g56_B 147 VFSDGTQAVSGGKDFSVKVWDLSQ------KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI 220 (357)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTT------TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC
T ss_pred ECCCCCEEEEEeCCCeEEEEECCC------CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee
Confidence 99998 899999999999999863 23456678899999999999987 4788999999999999987654432
Q ss_pred eeecCcceEEEEEe--c-CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEE
Q 012007 362 VLRGHKMAVLCLAA--A-GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTV 438 (473)
Q Consensus 362 ~~~~~~~~v~~~~~--~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l 438 (473)
....|...+.++++ + +.+|++|+.|+.|++||+.+ .+++..+.+|...|++++|+|++.. +|
T Consensus 221 ~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~---~~~~~~~~~~~~~v~~l~~sp~~~~------------~l 285 (357)
T 4g56_B 221 DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN---PDSAQTSAVHSQNITGLAYSYHSSP------------FL 285 (357)
T ss_dssp CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC---GGGCEEECCCSSCEEEEEECSSSSC------------CE
T ss_pred eeccccccccchhhhhcccceEEEeecccceeEEECCC---CcEeEEEeccceeEEEEEEcCCCCC------------EE
Confidence 23456666777765 3 67899999999999999998 5677888999999999999998753 79
Q ss_pred EEeeCCCcEEEEEcCCCCC
Q 012007 439 YSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 439 ~s~s~Dg~v~iW~i~~~~~ 457 (473)
++|+.||+|+|||+..++.
T Consensus 286 asgs~D~~i~iwd~~~~~~ 304 (357)
T 4g56_B 286 ASISEDCTVAVLDADFSEV 304 (357)
T ss_dssp EEEETTSCEEEECTTSCEE
T ss_pred EEEeCCCEEEEEECCCCcE
Confidence 9999999999999987653
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-36 Score=291.34 Aligned_cols=274 Identities=14% Similarity=0.200 Sum_probs=222.3
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCCc--cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecccc
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLP 205 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 205 (473)
+++++|++|++|+.||.|++||... ....+..| ..+....|++++++|++|+.||.|++||+.++......
T Consensus 63 ~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------ 135 (420)
T 3vl1_A 63 TFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID------ 135 (420)
T ss_dssp EEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET------
T ss_pred eeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec------
Confidence 6888999999999999999999763 33344444 44555678999999999999999999999876542211
Q ss_pred ccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEE
Q 012007 206 TFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVA 285 (473)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~ 285 (473)
.+|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|
T Consensus 136 --------------------------~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 189 (420)
T 3vl1_A 136 --------------------------QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAI 189 (420)
T ss_dssp --------------------------TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEE
T ss_pred --------------------------ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEE
Confidence 139999999999999999999999999999999999999999999999999999
Q ss_pred cCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeec---cCCccEE---------------------EEEEccCCCEEE
Q 012007 286 GFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLL---KHENAVT---------------------ALAVNQESAVVY 340 (473)
Q Consensus 286 ~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~---~~~~~v~---------------------~l~~~~~~~~l~ 340 (473)
+|++ +|++++.||.|++||++... ....+. .+...|. +++|+|++++|+
T Consensus 190 ~~~~~~l~s~~~d~~v~iwd~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 263 (420)
T 3vl1_A 190 IDRGRNVLSASLDGTIRLWECGTGT------TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVI 263 (420)
T ss_dssp ETTTTEEEEEETTSCEEEEETTTTE------EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEE
T ss_pred cCCCCEEEEEcCCCcEEEeECCCCc------eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEE
Confidence 9987 89999999999999997432 122222 3344444 455578999999
Q ss_pred EeCCCCcEEEEecCCcccccceeecCcceEEEEEe--cCC-EEEEEeCCCcEEEEecCCCCceeEEEEecC-CCCceeEE
Q 012007 341 CGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGN-LVFSGSADRNICLWRREESGAHSCLAVLTG-HTGPVKCL 416 (473)
Q Consensus 341 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~V~~l 416 (473)
+++.||.|++||+++..........|...+.++.+ ++. +|++|+.||.|++||+.++. .++..+.+ |...|.++
T Consensus 264 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~ 341 (420)
T 3vl1_A 264 AGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE--CPVGEFLINEGTPINNV 341 (420)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEEESTTSCEEEE
T ss_pred EEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc--CchhhhhccCCCCceEE
Confidence 99999999999999877666666678888877765 466 99999999999999998842 23445554 67788888
Q ss_pred EEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 417 AVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
.+. ++. +|++++.||.|++|++....
T Consensus 342 ~~~-~~~-------------~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 342 YFA-AGA-------------LFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp EEE-TTE-------------EEEEETTTEEEEEEEECCTT
T ss_pred EeC-CCC-------------EEEEecCCccEEEEeccCCC
Confidence 665 555 89999999999999998753
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-36 Score=279.87 Aligned_cols=279 Identities=16% Similarity=0.249 Sum_probs=229.1
Q ss_pred EEEEecCCEEEEeeCCCcEEEeeCCc--cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccc
Q 012007 127 YSLAASGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSL 204 (473)
Q Consensus 127 ~~~~~~g~~l~tg~~dg~i~vwd~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 204 (473)
.+++++|++++++..++.+.+|.... ......+|.+.|.+++|+|++++|++++ ||.|++||+.++........
T Consensus 15 ~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~--- 90 (337)
T 1gxr_A 15 FHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQ--- 90 (337)
T ss_dssp EEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEE---
T ss_pred EEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeec---
Confidence 45567799999998888887776543 2333457999999999999999999998 99999999987653211110
Q ss_pred cccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe--eeEEeecCCCceeE
Q 012007 205 PTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK--CLESINAHDDAINS 282 (473)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~--~~~~~~~~~~~v~~ 282 (473)
....+|...|.+++|+|++++|++++.|+.|++||+.+++ ....+..|...|.+
T Consensus 91 ------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~ 146 (337)
T 1gxr_A 91 ------------------------LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYA 146 (337)
T ss_dssp ------------------------EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEE
T ss_pred ------------------------ccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEE
Confidence 0011388999999999999999999999999999999877 66778889999999
Q ss_pred EEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccc
Q 012007 283 VVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGG 361 (473)
Q Consensus 283 l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 361 (473)
++|++++ ++++++.||.|++||++.. .....+..|...|.+++|+|++++|++++.||.|++||+++......
T Consensus 147 ~~~~~~~~~l~~~~~dg~v~~~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 220 (337)
T 1gxr_A 147 LAISPDSKVCFSCCSDGNIAVWDLHNQ------TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ 220 (337)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCC------ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEee
Confidence 9999987 8999999999999999732 34556677999999999999999999999999999999987655433
Q ss_pred eeecCcceEEEE--EecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEE
Q 012007 362 VLRGHKMAVLCL--AAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVY 439 (473)
Q Consensus 362 ~~~~~~~~v~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~ 439 (473)
. .+...+.++ ++++++|++++.|+.|++||+.+. . ...+..|...|.+++|+|++. +|+
T Consensus 221 ~--~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~---~-~~~~~~~~~~v~~~~~~~~~~-------------~l~ 281 (337)
T 1gxr_A 221 H--DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP---D-KYQLHLHESCVLSLKFAYCGK-------------WFV 281 (337)
T ss_dssp E--ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS---C-EEEECCCSSCEEEEEECTTSS-------------EEE
T ss_pred e--cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC---C-eEEEcCCccceeEEEECCCCC-------------EEE
Confidence 2 345555554 567999999999999999999883 2 345678999999999999998 899
Q ss_pred EeeCCCcEEEEEcCCCCCC
Q 012007 440 SGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 440 s~s~Dg~v~iW~i~~~~~~ 458 (473)
+++.||.|++|++..++..
T Consensus 282 ~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 282 STGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp EEETTSEEEEEETTTCCEE
T ss_pred EecCCCcEEEEECCCCeEE
Confidence 9999999999999887654
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=282.81 Aligned_cols=262 Identities=19% Similarity=0.275 Sum_probs=203.4
Q ss_pred eeeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCCc----cccccccCcccEEEEEEeC--CCCEEEEEeCCCeEEEE
Q 012007 117 GSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK----EFSGFKSNSGLVKAIIISG--DSNKIFTGHQDGKIRIW 188 (473)
Q Consensus 117 ~~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~----~~~~~~~h~~~V~~l~~s~--~~~~l~s~~~dg~i~vw 188 (473)
..+.+|.+.|.++++ +|++||+|+.|++|+|||+.. .+..+.+|.+.|.+++|++ ++++|++|+.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 356789999998886 489999999999999999652 3567889999999999986 48899999999999999
Q ss_pred eCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC--CCEEEEEeCCCCEEEEEcCC
Q 012007 189 KVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE--QGLLYSGSWDKTLKVWRISD 266 (473)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~s~s~dg~v~vwd~~~ 266 (473)
|+.++....... ..+|...|.+++|+|+ +.+|++|+.|++|++||++.
T Consensus 87 d~~~~~~~~~~~------------------------------~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~ 136 (316)
T 3bg1_A 87 REENGTWEKSHE------------------------------HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTG 136 (316)
T ss_dssp CCSSSCCCEEEE------------------------------ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECS
T ss_pred ECCCCcceEEEE------------------------------ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCC
Confidence 998764222111 1148999999999997 78999999999999999987
Q ss_pred Ce---eeEEeecCCCceeEEEEcCC------------------CEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCc
Q 012007 267 CK---CLESINAHDDAINSVVAGFD------------------SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHEN 325 (473)
Q Consensus 267 ~~---~~~~~~~~~~~v~~l~~~~~------------------~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 325 (473)
+. ....+.+|...|.++.|+|+ .+|++|+.|+.|++||++... .......+.+|..
T Consensus 137 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~---~~~~~~~l~~h~~ 213 (316)
T 3bg1_A 137 EGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG---QWKEEQKLEAHSD 213 (316)
T ss_dssp SSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS---CEEEEECCBCCSS
T ss_pred CCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC---ccceeeecccCCC
Confidence 53 24556789999999999986 379999999999999986321 1234556788999
Q ss_pred cEEEEEEccCC----CEEEEeCCCCcEEEEecCCc---ccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCC
Q 012007 326 AVTALAVNQES----AVVYCGSSDGLVNFWECEKH---LSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 326 ~v~~l~~~~~~----~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
.|.+++|+|++ .+|++++.|++|++||++.. ......+..|...+.+++ +++++|++|+.|+.|+||+...
T Consensus 214 ~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 214 WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred ceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 99999999986 89999999999999998762 122234567777776665 5699999999999999999875
Q ss_pred CCceeEEEEecCCCC
Q 012007 397 SGAHSCLAVLTGHTG 411 (473)
Q Consensus 397 ~~~~~~~~~~~~h~~ 411 (473)
.+...++..+....+
T Consensus 294 ~g~~~~~~~~~~~~~ 308 (316)
T 3bg1_A 294 DGQWVCISDVNKGQG 308 (316)
T ss_dssp TSCEEEEEECC----
T ss_pred CCcEEEeeeccCCCC
Confidence 445566666654443
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-37 Score=284.32 Aligned_cols=253 Identities=18% Similarity=0.221 Sum_probs=202.3
Q ss_pred ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeecc
Q 012007 156 GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY 235 (473)
Q Consensus 156 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (473)
.+.+|.+.|++++|+|+|++|++|+.|++|+|||+.++...... .+.+|.
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~------------------------------~l~gH~ 57 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIA------------------------------DLRGHE 57 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEE------------------------------EEECCS
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEE------------------------------EEcCCC
Confidence 45689999999999999999999999999999999765422111 122599
Q ss_pred CCeeEEEEcC--CCCEEEEEeCCCCEEEEEcCCC--eeeEEeecCCCceeEEEEcCC--C-EEEEEeCCCcEEEEeCccc
Q 012007 236 DAVSCLSLNA--EQGLLYSGSWDKTLKVWRISDC--KCLESINAHDDAINSVVAGFD--S-LVFTGSADGTVKVWRRELQ 308 (473)
Q Consensus 236 ~~v~~l~~~~--~~~~l~s~s~dg~v~vwd~~~~--~~~~~~~~~~~~v~~l~~~~~--~-~l~s~~~dg~i~vwd~~~~ 308 (473)
..|.+++|++ ++++|++|+.|++|++||++++ +.+..+.+|...|.+++|+|+ + +|++|+.|+.|++||++..
T Consensus 58 ~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~ 137 (316)
T 3bg1_A 58 GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE 137 (316)
T ss_dssp SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence 9999999986 4899999999999999999887 456778899999999999997 4 8999999999999998742
Q ss_pred CCCcceeeeeeeccCCccEEEEEEccC-----------------CCEEEEeCCCCcEEEEecCCcc--cccceeecCcce
Q 012007 309 GKGTKHCLAQVLLKHENAVTALAVNQE-----------------SAVVYCGSSDGLVNFWECEKHL--SHGGVLRGHKMA 369 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~l~~~~~-----------------~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~ 369 (473)
. .......+..|...|.+++|+|+ +.+|++|+.|+.|++||++... .....+.+|...
T Consensus 138 ~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~ 214 (316)
T 3bg1_A 138 G---QWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW 214 (316)
T ss_dssp S---CEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSC
T ss_pred C---CcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCc
Confidence 1 12234556789999999999997 4689999999999999997532 234567789999
Q ss_pred EEEEEec--C----CEEEEEeCCCcEEEEecCCCCc-eeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEee
Q 012007 370 VLCLAAA--G----NLVFSGSADRNICLWRREESGA-HSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS 442 (473)
Q Consensus 370 v~~~~~~--~----~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s 442 (473)
|.++++. + .+|++|+.|++|++|++..... ......+..|...|.+++|+|++. +|++++
T Consensus 215 V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~-------------~las~~ 281 (316)
T 3bg1_A 215 VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITAN-------------ILAVSG 281 (316)
T ss_dssp EEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTC-------------CEEEEE
T ss_pred eEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCC-------------EEEEEc
Confidence 9888764 3 7899999999999999876211 111223456889999999999998 899999
Q ss_pred CCCcEEEEEcCC
Q 012007 443 LDKSVKVWRVSE 454 (473)
Q Consensus 443 ~Dg~v~iW~i~~ 454 (473)
.||+|+||+...
T Consensus 282 ~D~~v~lw~~~~ 293 (316)
T 3bg1_A 282 GDNKVTLWKESV 293 (316)
T ss_dssp SSSCEEEEEECT
T ss_pred CCCeEEEEEECC
Confidence 999999999863
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=290.83 Aligned_cols=265 Identities=17% Similarity=0.224 Sum_probs=215.9
Q ss_pred cEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceE
Q 012007 144 NIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYV 221 (473)
Q Consensus 144 ~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (473)
.+..|+.. .....+.+|.+.|++++|+|++++|++|+.||+|+|||+.+++......
T Consensus 47 ~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~--------------------- 105 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIK--------------------- 105 (380)
T ss_dssp GCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE---------------------
T ss_pred cccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEe---------------------
Confidence 34455543 3456789999999999999999999999999999999998876443332
Q ss_pred EEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe-------eeEEeecCCCceeEEEEcCCC--EEE
Q 012007 222 EVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK-------CLESINAHDDAINSVVAGFDS--LVF 292 (473)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~-------~~~~~~~~~~~v~~l~~~~~~--~l~ 292 (473)
.|...|.+++|+|++++|++|+.|+.|++||+.+.. ....+.+|.+.|.++.|.|++ .|+
T Consensus 106 -----------~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~ 174 (380)
T 3iz6_a 106 -----------LHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLI 174 (380)
T ss_dssp -----------CCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEE
T ss_pred -----------cCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEE
Confidence 388999999999999999999999999999996532 345678899999999998864 799
Q ss_pred EEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc-CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEE
Q 012007 293 TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVL 371 (473)
Q Consensus 293 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 371 (473)
+|+.|+.|++||++.+.... ........+|...|.+++|++ ++.+|++|+.|+.|++||++........+.+|...|.
T Consensus 175 s~s~D~~i~~wd~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~ 253 (380)
T 3iz6_a 175 TGSGDQTCVLWDVTTGQRIS-IFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDIN 253 (380)
T ss_dssp EECTTSCEEEECTTTCCEEE-EECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCC
T ss_pred EECCCCcEEEEEcCCCcEEE-EeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeE
Confidence 99999999999997543100 000112257899999999987 8899999999999999999865566677888998886
Q ss_pred EEE--ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCC-------CceeEEEEecCCCCCcccccCCCccEEEEEee
Q 012007 372 CLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHT-------GPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS 442 (473)
Q Consensus 372 ~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~-------~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s 442 (473)
++. +++++|++|+.||+|++||+.+ ..++..+..+. ..|++++|+|++. +|++|+
T Consensus 254 ~v~~~p~~~~l~s~s~D~~i~lwd~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-------------~l~~g~ 317 (380)
T 3iz6_a 254 SVKFFPDGQRFGTGSDDGTCRLFDMRT---GHQLQVYNREPDRNDNELPIVTSVAFSISGR-------------LLFAGY 317 (380)
T ss_dssp EEEECTTSSEEEEECSSSCEEEEETTT---TEEEEEECCCCSSSCCSSCSCSEEEECSSSS-------------EEEEEC
T ss_pred EEEEecCCCeEEEEcCCCeEEEEECCC---CcEEEEecccccccccccCceEEEEECCCCC-------------EEEEEE
Confidence 665 5689999999999999999998 45566555432 3489999999998 899999
Q ss_pred CCCcEEEEEcCCCCC
Q 012007 443 LDKSVKVWRVSEHAP 457 (473)
Q Consensus 443 ~Dg~v~iW~i~~~~~ 457 (473)
.||.|++||+..++.
T Consensus 318 ~dg~i~vwd~~~~~~ 332 (380)
T 3iz6_a 318 SNGDCYVWDTLLAEM 332 (380)
T ss_dssp TTSCEEEEETTTCCE
T ss_pred CCCCEEEEECCCCce
Confidence 999999999876653
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-35 Score=277.92 Aligned_cols=252 Identities=18% Similarity=0.238 Sum_probs=213.0
Q ss_pred ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeE
Q 012007 152 KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231 (473)
Q Consensus 152 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (473)
+....+.+|.+.|.+++|+|++++|++|+.||+|++||..+.+......
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~------------------------------- 103 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT------------------------------- 103 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-------------------------------
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEe-------------------------------
Confidence 3455788999999999999999999999999999999998776443322
Q ss_pred eeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC------eeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEe
Q 012007 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC------KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWR 304 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~------~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd 304 (473)
.|...|.+++|+|++.+|++|+.|+.+++|++... .....+..|...|.++.|++++ .|++++.|+.|++||
T Consensus 104 -~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd 182 (354)
T 2pbi_B 104 -MPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWD 182 (354)
T ss_dssp -CSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred -cCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEe
Confidence 27788999999999999999999999999998643 3456677899999999999988 899999999999999
Q ss_pred CcccCCCcceeeeeeeccCCccEEEEEEcc--CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe--cCCEE
Q 012007 305 RELQGKGTKHCLAQVLLKHENAVTALAVNQ--ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLV 380 (473)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l 380 (473)
++.+ .....+.+|...|.+++|+| ++.+|++|+.||.|++||++++.. ...+.+|...|.++.+ ++.+|
T Consensus 183 ~~~~------~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~-~~~~~~h~~~v~~v~~~p~~~~l 255 (354)
T 2pbi_B 183 VESG------QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC-VQAFETHESDVNSVRYYPSGDAF 255 (354)
T ss_dssp TTTC------CEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSEE
T ss_pred CCCC------eEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE-EEEecCCCCCeEEEEEeCCCCEE
Confidence 9743 24567788999999999987 568999999999999999988644 4567789888877765 68999
Q ss_pred EEEeCCCcEEEEecCCCCceeEEEEecC--CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 381 FSGSADRNICLWRREESGAHSCLAVLTG--HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 381 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~--h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
++|+.|++|++||++.. ..+..+.. +...+.+++|+|++. +|++|+.|+.|++||+..+...
T Consensus 256 ~s~s~D~~v~lwd~~~~---~~~~~~~~~~~~~~~~~~~~s~~g~-------------~l~~g~~d~~i~vwd~~~~~~~ 319 (354)
T 2pbi_B 256 ASGSDDATCRLYDLRAD---REVAIYSKESIIFGASSVDFSLSGR-------------LLFAGYNDYTINVWDVLKGSRV 319 (354)
T ss_dssp EEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEECTTSS-------------EEEEEETTSCEEEEETTTCSEE
T ss_pred EEEeCCCeEEEEECCCC---cEEEEEcCCCcccceeEEEEeCCCC-------------EEEEEECCCcEEEEECCCCceE
Confidence 99999999999999873 44444443 345789999999998 8999999999999999876543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=280.14 Aligned_cols=277 Identities=14% Similarity=0.132 Sum_probs=233.0
Q ss_pred eeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCCc-c----ccccccCcccEEEEEEeCCCC-EEEEEeCCCeEEEEe
Q 012007 118 SIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK-E----FSGFKSNSGLVKAIIISGDSN-KIFTGHQDGKIRIWK 189 (473)
Q Consensus 118 ~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~-~----~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~i~vwd 189 (473)
...+|.+.|.++++ ++++|++|+.||.|+||+... . ...+..|...|.+++|+|+++ +|++|+.||.|++||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 34578999998876 588999999999999998642 2 455668999999999999999 999999999999999
Q ss_pred C-CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee--ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 012007 190 V-SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR--HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD 266 (473)
Q Consensus 190 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~ 266 (473)
+ .++.... ..+ |...|.+++|+| +++|++++.|+.|++||+++
T Consensus 86 ~~~~~~~~~---------------------------------~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~ 131 (342)
T 1yfq_A 86 LIGSPSFQA---------------------------------LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRN 131 (342)
T ss_dssp SSSSSSEEE---------------------------------CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHH
T ss_pred eccCCceEe---------------------------------ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccc
Confidence 9 7764311 114 889999999999 99999999999999999987
Q ss_pred ---------CeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcc-cCCCcceeeeeeeccCCccEEEEEEcc-C
Q 012007 267 ---------CKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRREL-QGKGTKHCLAQVLLKHENAVTALAVNQ-E 335 (473)
Q Consensus 267 ---------~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~~-~ 335 (473)
++++..+. |...|.++++++++ +++++.|+.|++||++. ... ........|...|.+++|+| +
T Consensus 132 ~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~~~~i~~i~~~~~~ 205 (342)
T 1yfq_A 132 YGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDD----NGTIEESGLKYQIRDVALLPKE 205 (342)
T ss_dssp HTTBCEEEEESCSSSSS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTC----CCEEEECSCSSCEEEEEECSGG
T ss_pred cccccccccCCeeeEEe-eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccc----cceeeecCCCCceeEEEECCCC
Confidence 77777776 88999999999888 99999999999999974 221 12334557888999999999 9
Q ss_pred CCEEEEeCCCCcEEEEecCCc-----ccccceeecCcc---------eEEEEE--ecCCEEEEEeCCCcEEEEecCCCCc
Q 012007 336 SAVVYCGSSDGLVNFWECEKH-----LSHGGVLRGHKM---------AVLCLA--AAGNLVFSGSADRNICLWRREESGA 399 (473)
Q Consensus 336 ~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~---------~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~ 399 (473)
+++|++++.||.|++|+++.. ......+..|.. .+.+++ +++++|++|+.||.|++||+.+
T Consensus 206 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~--- 282 (342)
T 1yfq_A 206 QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT--- 282 (342)
T ss_dssp GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT---
T ss_pred CCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc---
Confidence 999999999999999999875 355566777744 676665 5689999999999999999998
Q ss_pred eeEEEEecCC-CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCc-EEEEEc
Q 012007 400 HSCLAVLTGH-TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKS-VKVWRV 452 (473)
Q Consensus 400 ~~~~~~~~~h-~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~-v~iW~i 452 (473)
.+++..+.+| ...|++++ |++. +|++++.||. .+.|..
T Consensus 283 ~~~~~~~~~~h~~~v~~~~--~~~~-------------~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 283 RKKIKNFAKFNEDSVVKIA--CSDN-------------ILCLATSDDTFKTNAAI 322 (342)
T ss_dssp TEEEEECCCCSSSEEEEEE--ECSS-------------EEEEEEECTHHHHCSSS
T ss_pred HhHhhhhhcccCCCceEec--CCCC-------------eEEEEecCCcccccccc
Confidence 5778889998 99999999 8888 8999999998 655554
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=279.74 Aligned_cols=297 Identities=14% Similarity=0.124 Sum_probs=216.5
Q ss_pred eeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCCc------cccccccCcccEEEEEEeC--CCCEEEEEeCCCeE
Q 012007 116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLK------EFSGFKSNSGLVKAIIISG--DSNKIFTGHQDGKI 185 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~------~~~~~~~h~~~V~~l~~s~--~~~~l~s~~~dg~i 185 (473)
...+.+|.+.|.++.++ +++||+|+.||.|+|||... ....+.+|...|.+++|+| ++++|++|+.||.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 34567899999999874 88999999999999999652 3456678999999999999 69999999999999
Q ss_pred EEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC--CCEEEEEeCCCCEEEEE
Q 012007 186 RIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE--QGLLYSGSWDKTLKVWR 263 (473)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~s~s~dg~v~vwd 263 (473)
++||+..+....... ..........|...|.+++|+|+ +.+|++++.||.|++||
T Consensus 84 ~vwd~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd 140 (351)
T 3f3f_A 84 KLWEEDPDQEECSGR-----------------------RWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYD 140 (351)
T ss_dssp EEEEECTTSCTTSSC-----------------------SEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEE
T ss_pred EEEecCCCccccccc-----------------------CcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEec
Confidence 999998764211000 00000112248999999999999 99999999999999999
Q ss_pred cCCCeeeEEee-------------cCCCceeEEEEcCC---C-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCcc
Q 012007 264 ISDCKCLESIN-------------AHDDAINSVVAGFD---S-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENA 326 (473)
Q Consensus 264 ~~~~~~~~~~~-------------~~~~~v~~l~~~~~---~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
+++++.+..+. .|...+.++.|+|+ + .+++++.|+.+.+|+.... .......+..|...
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~h~~~ 216 (351)
T 3f3f_A 141 ALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG----KLHVAAKLPGHKSL 216 (351)
T ss_dssp CSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS----CEEEEEECCCCCSC
T ss_pred CCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC----ceeeeeecCCCCcc
Confidence 98877554433 57889999999986 3 8999999999988876532 22345667789999
Q ss_pred EEEEEEccCC----CEEEEeCCCCcEEEEecCCcccccceeecCcceEE--EEEecCCEEEEE----eCCCcEEEEecCC
Q 012007 327 VTALAVNQES----AVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVL--CLAAAGNLVFSG----SADRNICLWRREE 396 (473)
Q Consensus 327 v~~l~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~s~----~~dg~i~iwd~~~ 396 (473)
|++++|+|++ .+|++++.||.|++||++........ ..+..... ........+..+ .....+.+|+...
T Consensus 217 i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (351)
T 3f3f_A 217 IRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLAS-EESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ 295 (351)
T ss_dssp EEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------------------------------------CCSEE
T ss_pred eeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCcccc-CCcccceeccCCCcccccccccccccccceeeeeccccc
Confidence 9999999998 89999999999999999865333221 11111111 112222333333 3344455555444
Q ss_pred CCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 397 SGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 397 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
..++..+.+|...|++++|+|++. +|++|+.||.|+||++..+.
T Consensus 296 ---~~~~~~~~~h~~~v~~~~~s~~~~-------------~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 296 ---VELLSEHDDHNGEVWSVSWNLTGT-------------ILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp ---EEEEEEECTTSSCEEEEEECSSSC-------------CEEEEETTSCEEEEEECTTS
T ss_pred ---ccEEEEEecccccEEEEEEcCCCC-------------EEEEecCCCcEEEEecCcCc
Confidence 678889999999999999999998 89999999999999998765
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=289.01 Aligned_cols=314 Identities=13% Similarity=0.213 Sum_probs=225.0
Q ss_pred eecccEEEEEec--CCEEEEeeCCCcEEEeeCCc-------------cccccccCc------------ccEEEEEEeCCC
Q 012007 121 RKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLK-------------EFSGFKSNS------------GLVKAIIISGDS 173 (473)
Q Consensus 121 ~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~-------------~~~~~~~h~------------~~V~~l~~s~~~ 173 (473)
.|.+.|.+++++ |++||+|+.||.|+|||... ....+.+|. +.|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 457888887764 88999999999999998652 255778898 889999999998
Q ss_pred --CEEEEEeCCCeEEEEeCCCCCeeeEEeeccc--------cccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEE
Q 012007 174 --NKIFTGHQDGKIRIWKVSRKNASVHKRVGSL--------PTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL 243 (473)
Q Consensus 174 --~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 243 (473)
.+|++++.||.|++||+..+........... .....+......+...............+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 7999999999999999876443211000000 000000000000000111111111223469999999999
Q ss_pred cCCCCEEEEEeCCCCEEEEEcCC-CeeeE-------EeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcc
Q 012007 244 NAEQGLLYSGSWDKTLKVWRISD-CKCLE-------SINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTK 313 (473)
Q Consensus 244 ~~~~~~l~s~s~dg~v~vwd~~~-~~~~~-------~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~ 313 (473)
+|++++|++| .|+.|++||+++ ++.+. .+..|...|.+++|+|++ +|++|+.||.|++||++.... .
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~--~ 262 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL--C 262 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS--S
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc--c
Confidence 9999999999 799999999984 44444 256899999999999985 899999999999999985432 1
Q ss_pred eeeeeeeccCCc------------cEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceE-----------
Q 012007 314 HCLAQVLLKHEN------------AVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAV----------- 370 (473)
Q Consensus 314 ~~~~~~~~~~~~------------~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v----------- 370 (473)
......+..|.. .|.+++|+|++++|++++. +.|++||++........+.+|...+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 341 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC 341 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccc
Confidence 111344555554 8999999999999999998 9999999987444556666775321
Q ss_pred ------EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEE-----------------------------ecCCCCceeE
Q 012007 371 ------LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAV-----------------------------LTGHTGPVKC 415 (473)
Q Consensus 371 ------~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----------------------------~~~h~~~V~~ 415 (473)
.++++++++|++|+.||.|++||+.++........ ...+...|.+
T Consensus 342 i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 421 (447)
T 3dw8_B 342 IFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILH 421 (447)
T ss_dssp GGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCE
T ss_pred cccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeE
Confidence 67888999999999999999999988432110000 1133457899
Q ss_pred EEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 416 LAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 416 l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
++|+|++. +||+++.++ +++|.-
T Consensus 422 ~~~~p~~~-------------~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 422 TAWHPKEN-------------IIAVATTNN-LYIFQD 444 (447)
T ss_dssp EEECSSSS-------------EEEEECSSC-EEEEEC
T ss_pred EEECCCCC-------------EEEEEecce-eeeecc
Confidence 99999998 899888775 888864
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-35 Score=272.24 Aligned_cols=249 Identities=22% Similarity=0.374 Sum_probs=208.7
Q ss_pred ccccccCcccEEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEe
Q 012007 154 FSGFKSNSGLVKAIIISGDS-NKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKI 232 (473)
Q Consensus 154 ~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (473)
...+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.......... ...+.
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~---------------------------~~~~~ 62 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP---------------------------VRSFK 62 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEE---------------------------EEEEE
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccccc---------------------------ceEEe
Confidence 34678999999999999965 899999999999999986433211111 11223
Q ss_pred eccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCC
Q 012007 233 RHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 233 ~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
+|...|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.++++++++ +|++|+.|+.|++||++.
T Consensus 63 ~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~---- 138 (319)
T 3frx_A 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG---- 138 (319)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS----
T ss_pred CCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----
Confidence 599999999999999999999999999999999999999999999999999999987 899999999999999862
Q ss_pred cceeeeeeeccCCccEEEEEEccC------CCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEE
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQE------SAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSG 383 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~~------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~ 383 (473)
.....+.+|...|.+++|.|. +.+|++++.|+.|++||+++.. ....+.+|...+.+++ +++++|++|
T Consensus 139 ---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~sp~g~~l~s~ 214 (319)
T 3frx_A 139 ---QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ-IEADFIGHNSNINTLTASPDGTLIASA 214 (319)
T ss_dssp ---CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE-EEEEECCCCSCEEEEEECTTSSEEEEE
T ss_pred ---CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch-hheeecCCCCcEEEEEEcCCCCEEEEE
Confidence 134567789999999999985 4589999999999999998753 3356678988887765 569999999
Q ss_pred eCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 384 SADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 384 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
+.||.|++||+.+ .+++..+..+ ..|.+++|+|++. +|++++.+ .+++|++...
T Consensus 215 ~~dg~i~iwd~~~---~~~~~~~~~~-~~v~~~~~sp~~~-------------~la~~~~~-~i~v~~~~~~ 268 (319)
T 3frx_A 215 GKDGEIMLWNLAA---KKAMYTLSAQ-DEVFSLAFSPNRY-------------WLAAATAT-GIKVFSLDPQ 268 (319)
T ss_dssp ETTCEEEEEETTT---TEEEEEEECC-SCEEEEEECSSSS-------------EEEEEETT-EEEEEEETTE
T ss_pred eCCCeEEEEECCC---CcEEEEecCC-CcEEEEEEcCCCC-------------EEEEEcCC-CcEEEEeCcC
Confidence 9999999999998 4667777654 6899999999998 77777654 5999998754
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-35 Score=280.34 Aligned_cols=238 Identities=24% Similarity=0.416 Sum_probs=200.8
Q ss_pred cEEEEEe--cCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEe
Q 012007 125 HIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKR 200 (473)
Q Consensus 125 ~V~~~~~--~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 200 (473)
.|.++++ +|++|++|+.||.|+|||.. +.+..+.+|...|.+++|+|++++|++|+.|+.|++||+.+++.....
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~- 203 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL- 203 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE-
Confidence 3777665 58999999999999999976 456678899999999999999999999999999999999887643322
Q ss_pred eccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEe------
Q 012007 201 VGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESI------ 273 (473)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~------ 273 (473)
.+...+.+++|+| ++.+|++|+.|+.|++||+++++.+..+
T Consensus 204 --------------------------------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~ 251 (393)
T 1erj_A 204 --------------------------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 251 (393)
T ss_dssp --------------------------------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-----
T ss_pred --------------------------------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccC
Confidence 2667899999999 8999999999999999999999888776
Q ss_pred -ecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCc------ceeeeeeeccCCccEEEEEEccCCCEEEEeCCC
Q 012007 274 -NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGT------KHCLAQVLLKHENAVTALAVNQESAVVYCGSSD 345 (473)
Q Consensus 274 -~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~------~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d 345 (473)
.+|...|.+++|++++ +|++|+.|+.|++||++...... .......+.+|...|.+++|+|++.+|++|+.|
T Consensus 252 ~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D 331 (393)
T 1erj_A 252 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD 331 (393)
T ss_dssp -CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT
T ss_pred CCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCC
Confidence 5789999999999998 89999999999999997532210 112334567899999999999999999999999
Q ss_pred CcEEEEecCCcccccceeecCcceEEEEEe--------cCCEEEEEeCCCcEEEEecCC
Q 012007 346 GLVNFWECEKHLSHGGVLRGHKMAVLCLAA--------AGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--------~~~~l~s~~~dg~i~iwd~~~ 396 (473)
+.|++||++++.. ...+.+|...|.++.+ ++++|++|+.||+|+||++..
T Consensus 332 ~~v~iwd~~~~~~-~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 332 RGVLFWDKKSGNP-LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp SEEEEEETTTCCE-EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CeEEEEECCCCeE-EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 9999999987654 3577899999988875 467999999999999999865
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=305.34 Aligned_cols=290 Identities=18% Similarity=0.270 Sum_probs=246.5
Q ss_pred ceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
+...+.+|.+.|.+++++ |++||+|+.||.|+|||.. +.+..+.+|.+.|.+++|+|++++|++|+.||.|++||+
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 84 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 467889999999998865 8899999999999999965 456778899999999999999999999999999999999
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC-ee
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC-KC 269 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~-~~ 269 (473)
.+++...... +|...|.+++|+|++++|++++.||.|++||+.++ ..
T Consensus 85 ~~~~~~~~~~--------------------------------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~ 132 (814)
T 3mkq_A 85 NTGEKVVDFE--------------------------------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132 (814)
T ss_dssp TTCCEEEEEE--------------------------------CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEE
T ss_pred CCCcEEEEEe--------------------------------cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceE
Confidence 8876544332 38999999999999999999999999999999887 77
Q ss_pred eEEeecCCCceeEEEEcC-CC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc--CCCEEEEeCCC
Q 012007 270 LESINAHDDAINSVVAGF-DS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ--ESAVVYCGSSD 345 (473)
Q Consensus 270 ~~~~~~~~~~v~~l~~~~-~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~d 345 (473)
...+..|...|.+++|+| ++ .+++++.||.|++||+.... ........+...+.+++|+| ++.+|++++.|
T Consensus 133 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 207 (814)
T 3mkq_A 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----PNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207 (814)
T ss_dssp EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-----CSEEEECCCTTCCCEEEECCSTTCCEEEEECTT
T ss_pred EEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC
Confidence 788889999999999999 55 89999999999999986432 22233344558899999999 99999999999
Q ss_pred CcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 346 GLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
|.|++||++++.. ...+.+|...+.++. +++++|++++.||.|++||+.+ ...+..+..|...|.+++|+|++.
T Consensus 208 g~i~~~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~ 283 (814)
T 3mkq_A 208 LTIKIWDYQTKSC-VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST---YKVEKTLNVGLERSWCIATHPTGR 283 (814)
T ss_dssp SEEEEEETTTTEE-EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT---CSEEEEECCSSSSEEEEEECTTCG
T ss_pred CEEEEEECCCCcE-EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CcEEEEeecCCCcEEEEEEccCCC
Confidence 9999999987544 456677887776655 5689999999999999999988 577888889999999999999986
Q ss_pred CCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 424 HDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 424 ~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
. ++++++.|+.+.+|++....+
T Consensus 284 ~------------~~~~~~~~~~~~~~~~~~~~~ 305 (814)
T 3mkq_A 284 K------------NYIASGFDNGFTVLSLGNDEP 305 (814)
T ss_dssp G------------GEEEEEETTEEEEEECSCCSC
T ss_pred c------------eEEEEEeCCCEEEEEcCCCCc
Confidence 3 445555677899999876544
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=273.11 Aligned_cols=257 Identities=19% Similarity=0.282 Sum_probs=204.8
Q ss_pred cccccccCcccEEEEEE-----eC-CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeec
Q 012007 153 EFSGFKSNSGLVKAIII-----SG-DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRN 226 (473)
Q Consensus 153 ~~~~~~~h~~~V~~l~~-----s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (473)
....+.+|.+.|++++| ++ ++++|++|+.|++|++||+...+...... .
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~-------------------------~ 67 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFG-------------------------I 67 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSE-------------------------E
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccc-------------------------c
Confidence 34568899999999999 66 89999999999999999987643210000 0
Q ss_pred ceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeC
Q 012007 227 RSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRR 305 (473)
Q Consensus 227 ~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~ 305 (473)
......+|...|.+++|+|++.+|++|+.|++|++||+++++.+..+.+|...|.+++|+|++ +|++++.|+.|++||+
T Consensus 68 ~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~ 147 (343)
T 2xzm_R 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147 (343)
T ss_dssp EEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred ccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEec
Confidence 011223599999999999999999999999999999999999999999999999999999998 8999999999999998
Q ss_pred cccCCCcceeeeeeeccCCccEEEEEEccCC----------CEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE-
Q 012007 306 ELQGKGTKHCLAQVLLKHENAVTALAVNQES----------AVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA- 374 (473)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~- 374 (473)
... ..........|...|.+++|+|++ .+|++++.||.|++||... .....+.+|...+.+++
T Consensus 148 ~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~h~~~v~~~~~ 221 (343)
T 2xzm_R 148 LGE----CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF--QIRYTFKAHESNVNHLSI 221 (343)
T ss_dssp SSC----EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT--EEEEEEECCSSCEEEEEE
T ss_pred cCC----ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC--ceeEEEcCccccceEEEE
Confidence 621 111122234788999999999987 7999999999999999543 33356778988887766
Q ss_pred -ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 375 -AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 375 -~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
+++++|++|+.||.|++||+.... .....+ .+...|.+++|+|++. +++ ++.|+.|++|++.
T Consensus 222 s~~g~~l~sgs~dg~v~iwd~~~~~--~~~~~~-~~~~~v~~v~~sp~~~-------------~la-~~~d~~v~iw~~~ 284 (343)
T 2xzm_R 222 SPNGKYIATGGKDKKLLIWDILNLT--YPQREF-DAGSTINQIAFNPKLQ-------------WVA-VGTDQGVKIFNLM 284 (343)
T ss_dssp CTTSSEEEEEETTCEEEEEESSCCS--SCSEEE-ECSSCEEEEEECSSSC-------------EEE-EEESSCEEEEESS
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCc--ccceee-cCCCcEEEEEECCCCC-------------EEE-EECCCCEEEEEeC
Confidence 569999999999999999995422 222222 2455799999999987 555 5568889999998
Q ss_pred CCCC
Q 012007 454 EHAP 457 (473)
Q Consensus 454 ~~~~ 457 (473)
....
T Consensus 285 ~~~~ 288 (343)
T 2xzm_R 285 TQSK 288 (343)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 7654
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-35 Score=277.93 Aligned_cols=287 Identities=18% Similarity=0.255 Sum_probs=231.5
Q ss_pred ceeeeeeecccEEEEEec-----CCEEEEeeCCCcEEEeeCCc---cc-cccccCcccEEEEEEeCCCCEEEEEeCCCeE
Q 012007 115 LIGSIVRKEGHIYSLAAS-----GDLLYTGSDSKNIRVWKNLK---EF-SGFKSNSGLVKAIIISGDSNKIFTGHQDGKI 185 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~~-----g~~l~tg~~dg~i~vwd~~~---~~-~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i 185 (473)
.+..+.+|.+.|.+++++ |++|++|+.||.|+|||... .+ ..+.+|.+.|.+++|+|++++|++++.||.|
T Consensus 31 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v 110 (368)
T 3mmy_A 31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTA 110 (368)
T ss_dssp CEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred eeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcE
Confidence 456778999999999876 37999999999999999653 22 5678899999999999999999999999999
Q ss_pred EEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEE--cCCCCEEEEEeCCCCEEEEE
Q 012007 186 RIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL--NAEQGLLYSGSWDKTLKVWR 263 (473)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~~~l~s~s~dg~v~vwd 263 (473)
++||+.+++.... .+|...|.+++| ++++.+|++++.|+.|++||
T Consensus 111 ~iwd~~~~~~~~~---------------------------------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd 157 (368)
T 3mmy_A 111 KMWDLSSNQAIQI---------------------------------AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157 (368)
T ss_dssp EEEETTTTEEEEE---------------------------------EECSSCEEEEEEEECSSCEEEEEEETTSEEEEEC
T ss_pred EEEEcCCCCceee---------------------------------ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEE
Confidence 9999988764332 249999999999 88999999999999999999
Q ss_pred cCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCE----E
Q 012007 264 ISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAV----V 339 (473)
Q Consensus 264 ~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~----l 339 (473)
+++++.+..+..+. .+.++.+..+ .+++++.++.+++|+++... .........+...+.++++.++... +
T Consensus 158 ~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (368)
T 3mmy_A 158 TRSSNPMMVLQLPE-RCYCADVIYP-MAVVATAERGLIVYQLENQP----SEFRRIESPLKHQHRCVAIFKDKQNKPTGF 231 (368)
T ss_dssp SSCSSCSEEEECSS-CEEEEEEETT-EEEEEEGGGCEEEEECSSSC----EEEEECCCSCSSCEEEEEEEECTTSCEEEE
T ss_pred CCCCcEEEEEecCC-CceEEEecCC-eeEEEeCCCcEEEEEecccc----chhhhccccccCCCceEEEcccCCCCCCeE
Confidence 99999999988765 5666666543 78888999999999997432 1122222334455666666655544 9
Q ss_pred EEeCCCCcEEEEecCCcc--cccceeecCcc------------eEEEEE--ecCCEEEEEeCCCcEEEEecCCCCceeEE
Q 012007 340 YCGSSDGLVNFWECEKHL--SHGGVLRGHKM------------AVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCL 403 (473)
Q Consensus 340 ~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~------------~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 403 (473)
++++.||.|++||++... .....+.+|.. .+.++. +++++|++|+.||.|++||+.+ ..++
T Consensus 232 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~---~~~~ 308 (368)
T 3mmy_A 232 ALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA---RTKL 308 (368)
T ss_dssp EEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT---TEEE
T ss_pred EEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC---CcEE
Confidence 999999999999998653 33345666664 566555 5689999999999999999998 5788
Q ss_pred EEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 404 AVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 404 ~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
..+.+|...|++++|+|++. +|++++.|+..+.|++-..+
T Consensus 309 ~~~~~~~~~v~~~~~s~~g~-------------~l~~~s~d~~~~~~~~~~~~ 348 (368)
T 3mmy_A 309 KTSEQLDQPISACCFNHNGN-------------IFAYASSYDWSKGHEFYNPQ 348 (368)
T ss_dssp EECCCCSSCEEEEEECTTSS-------------CEEEEECCCSTTCGGGCCTT
T ss_pred EEecCCCCCceEEEECCCCC-------------eEEEEecccccccccccCCC
Confidence 99999999999999999998 89999999877776665443
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-36 Score=294.39 Aligned_cols=284 Identities=11% Similarity=0.104 Sum_probs=208.0
Q ss_pred eeeeeecccEEEEEec--------CCEEEEeeCCCcEEEeeCCcc-------------ccccccCcccEEEEEEeCCCCE
Q 012007 117 GSIVRKEGHIYSLAAS--------GDLLYTGSDSKNIRVWKNLKE-------------FSGFKSNSGLVKAIIISGDSNK 175 (473)
Q Consensus 117 ~~l~~h~~~V~~~~~~--------g~~l~tg~~dg~i~vwd~~~~-------------~~~~~~h~~~V~~l~~s~~~~~ 175 (473)
.++.+|.+.|.+++|+ +.+||+|+.||+|+|||+... ...+.+|...|.+++|++++ .
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~ 279 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-T 279 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-E
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-e
Confidence 3466788999988875 359999999999999997532 12567899999999999865 8
Q ss_pred EEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE--EEcCCC-CEEEE
Q 012007 176 IFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL--SLNAEQ-GLLYS 252 (473)
Q Consensus 176 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l--~~~~~~-~~l~s 252 (473)
|++|+.||+|++||+.++..... ...+|...|.++ .|++++ .+|++
T Consensus 280 lasgs~DgtV~lWD~~~~~~~~~-------------------------------~~~~H~~~V~sv~~~~s~~g~~~laS 328 (524)
T 2j04_B 280 VVCGFKNGFVAEFDLTDPEVPSF-------------------------------YDQVHDSYILSVSTAYSDFEDTVVST 328 (524)
T ss_dssp EEEEETTSEEEEEETTBCSSCSE-------------------------------EEECSSSCEEEEEEECCTTSCCEEEE
T ss_pred EEEEeCCCEEEEEECCCCCCceE-------------------------------EeecccccEEEEEEEcCCCCCeEEEE
Confidence 99999999999999986532211 112499999999 567887 89999
Q ss_pred EeCCCCEEEEEcCCCeeeEEeecCCC--ceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEE
Q 012007 253 GSWDKTLKVWRISDCKCLESINAHDD--AINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTA 329 (473)
Q Consensus 253 ~s~dg~v~vwd~~~~~~~~~~~~~~~--~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~ 329 (473)
|+.|++|+|||+++++++..+.+|.. .|.+++|+|++ .+++++.|+.|++||++... ....+.+|...|++
T Consensus 329 ~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~------~~~~l~gH~~~V~s 402 (524)
T 2j04_B 329 VAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF------AVHPLVSRETTITA 402 (524)
T ss_dssp EETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT------CCEEEEECSSCEEE
T ss_pred eccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc------cceeeecCCCceEE
Confidence 99999999999999888777776653 58899999977 88999999999999997432 23456689999999
Q ss_pred EEEccCCCEEEEeCCCCcEEEEecCCcccccceeec-----CcceEEEE--EecCCEEEEEeCCCcEEEEecCCCCceeE
Q 012007 330 LAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRG-----HKMAVLCL--AAAGNLVFSGSADRNICLWRREESGAHSC 402 (473)
Q Consensus 330 l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~v~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 402 (473)
++|+|++++|++|+.||+|++||+.... . ..... +...+.++ +++++.+. ... .+.+|+... ...+
T Consensus 403 va~Sp~g~~l~Sgs~Dgtv~lwd~~~~~-~-~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~--~g~~ 475 (524)
T 2j04_B 403 IGVSRLHPMVLAGSADGSLIITNAARRL-L-HGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTV--NDVS 475 (524)
T ss_dssp EECCSSCCBCEEEETTTEEECCBSCSST-T-TCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC---------
T ss_pred EEeCCCCCeEEEEECCCEEEEEechHhh-c-cccccCccceeeeEEEEeccCCCCCeEE-ccC--Cceeccccc--CCcc
Confidence 9999999999999999999999986532 1 11111 11134344 45566442 222 233333321 1356
Q ss_pred EEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 403 LAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 403 ~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
+..+.+|...|.+++|+|++.. + ..+|+|+.||.|+||++.-.
T Consensus 476 ~~~l~gh~~~V~~Vafsp~~~~-------~---~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 476 KAKIDAHGINITCTKWNETSAG-------G---KCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp ------CCCSCCCEEECCSTTT-------T---TEEEEECTTSEEEEEECSCC
T ss_pred eeeecCCCceEEEEECCCCCCc-------c---HHHHhhccCceEEEEEcccc
Confidence 7788999999999999999631 0 07999999999999998643
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=275.61 Aligned_cols=255 Identities=18% Similarity=0.230 Sum_probs=211.3
Q ss_pred cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEe
Q 012007 153 EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKI 232 (473)
Q Consensus 153 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (473)
.+..+.+|.+.|.+++|+|++++|++|+.||.|++||+.......... ..
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~------------------------------~~ 52 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDT------------------------------LT 52 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEE------------------------------EC
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeE------------------------------ec
Confidence 456788999999999999999999999999999999997443222211 12
Q ss_pred eccCCeeEEEEcCC--CCEEEEEeCCCCEEEEEcCCCe--eeEEeecCCCceeEEEEcCC--C-EEEEEeCCCcEEEEeC
Q 012007 233 RHYDAVSCLSLNAE--QGLLYSGSWDKTLKVWRISDCK--CLESINAHDDAINSVVAGFD--S-LVFTGSADGTVKVWRR 305 (473)
Q Consensus 233 ~~~~~v~~l~~~~~--~~~l~s~s~dg~v~vwd~~~~~--~~~~~~~~~~~v~~l~~~~~--~-~l~s~~~dg~i~vwd~ 305 (473)
+|...|.+++|+++ +.+|++|+.||.|++||+.+++ .+..+..|...|.+++|+|+ + ++++++.||.|++||+
T Consensus 53 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~ 132 (379)
T 3jrp_A 53 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF 132 (379)
T ss_dssp CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEec
Confidence 49999999999987 9999999999999999999987 77788889999999999998 5 8999999999999999
Q ss_pred cccCCCcceeeeeeeccCCccEEEEEEcc-------------CCCEEEEeCCCCcEEEEecCCccc---ccceeecCcce
Q 012007 306 ELQGKGTKHCLAQVLLKHENAVTALAVNQ-------------ESAVVYCGSSDGLVNFWECEKHLS---HGGVLRGHKMA 369 (473)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-------------~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~ 369 (473)
+.... .....+..|...|.+++|+| ++.+|++++.||.|++||++.... ....+.+|...
T Consensus 133 ~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~ 208 (379)
T 3jrp_A 133 KENGT----TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW 208 (379)
T ss_dssp CTTSC----CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC
T ss_pred CCCCc----eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCc
Confidence 75322 22345678999999999999 699999999999999999976432 33456678888
Q ss_pred EEEEEe--c---CCEEEEEeCCCcEEEEecCCCCceeEEEE--ecCCCCceeEEEEecCCCCCcccccCCCccEEEEEee
Q 012007 370 VLCLAA--A---GNLVFSGSADRNICLWRREESGAHSCLAV--LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS 442 (473)
Q Consensus 370 v~~~~~--~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s 442 (473)
+.++.+ + +++|++++.||.|++||+..+........ ...|...|++++|+|++. +|++++
T Consensus 209 v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-------------~l~~~~ 275 (379)
T 3jrp_A 209 VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-------------VLALSG 275 (379)
T ss_dssp EEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC-------------CEEEEE
T ss_pred EeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCC-------------EEEEec
Confidence 877664 5 78999999999999999987532223333 345889999999999998 799999
Q ss_pred CCCcEEEEEcCC
Q 012007 443 LDKSVKVWRVSE 454 (473)
Q Consensus 443 ~Dg~v~iW~i~~ 454 (473)
.||.|++|++..
T Consensus 276 ~dg~i~iw~~~~ 287 (379)
T 3jrp_A 276 GDNKVTLWKENL 287 (379)
T ss_dssp SSSSEEEEEEEE
T ss_pred CCCcEEEEeCCC
Confidence 999999999984
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-35 Score=319.00 Aligned_cols=290 Identities=19% Similarity=0.294 Sum_probs=246.0
Q ss_pred eeeeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q 012007 116 IGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVS 191 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~ 191 (473)
...+.+|.+.|+++++ +|++||+|+.||+|+|||.. +.+..+.+|.+.|.+++|+|++++|++|+.||.|++||+.
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~ 687 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence 3467889999998776 58899999999999999975 5567788999999999999999999999999999999999
Q ss_pred CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC--CCCEEEEEeCCCCEEEEEcCCCee
Q 012007 192 RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA--EQGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
+++...... +|...|.+++|++ ++.++++|+.|+.|++||+.++++
T Consensus 688 ~~~~~~~~~--------------------------------~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~ 735 (1249)
T 3sfz_A 688 TGKLVHTYD--------------------------------EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC 735 (1249)
T ss_dssp TCCEEEEEE--------------------------------CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE
T ss_pred CCceEEEEc--------------------------------CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch
Confidence 886544332 4899999999999 566999999999999999999999
Q ss_pred eEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeee-------eeccCCccEEEEEEccCCCEEEE
Q 012007 270 LESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQ-------VLLKHENAVTALAVNQESAVVYC 341 (473)
Q Consensus 270 ~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~v~~l~~~~~~~~l~~ 341 (473)
+..+.+|...|.+++|+|++ .+++++.||.|++||++............ ........+.+++|+|++..+++
T Consensus 736 ~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 815 (1249)
T 3sfz_A 736 RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIV 815 (1249)
T ss_dssp EEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEE
T ss_pred hheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEE
Confidence 99999999999999999998 89999999999999997432211110000 11123447889999999999998
Q ss_pred eCCCCcEEEEecCCcccccceeecCcceEEEE--EecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEe
Q 012007 342 GSSDGLVNFWECEKHLSHGGVLRGHKMAVLCL--AAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVE 419 (473)
Q Consensus 342 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~ 419 (473)
++ ++.+.+||+.+.........+|...+.++ ++++.++++++.||.|++||+.+ ...+..+.+|...|++++|+
T Consensus 816 ~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~---~~~~~~~~~h~~~v~~v~~s 891 (1249)
T 3sfz_A 816 AA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS---RLKVADCRGHLSWVHGVMFS 891 (1249)
T ss_dssp EE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTT---TEEEEEECCCSSCEEEEEEC
T ss_pred Ec-CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC---CceeeecCCCccceEEEEEC
Confidence 87 68999999998776666666777777555 56799999999999999999998 57788899999999999999
Q ss_pred cCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 420 EDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
|++. +|++++.||.|++|++..
T Consensus 892 pdg~-------------~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 892 PDGS-------------SFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp TTSS-------------EEEEEETTSCEEEEEHHH
T ss_pred CCCC-------------EEEEEeCCCeEEEEEccc
Confidence 9998 899999999999999864
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-34 Score=279.18 Aligned_cols=303 Identities=18% Similarity=0.309 Sum_probs=237.8
Q ss_pred ccceeeeeeecccEEEEEec-CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEe--CCCCEEEEEeCCCeEEE
Q 012007 113 NGLIGSIVRKEGHIYSLAAS-GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIIS--GDSNKIFTGHQDGKIRI 187 (473)
Q Consensus 113 ~~~~~~l~~h~~~V~~~~~~-g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s--~~~~~l~s~~~dg~i~v 187 (473)
...+..+.+|.+.|.++.++ +.+|++|+.||+|++||.. +.+..+.+|.+.|.+++|+ +++++|++|+.||.|++
T Consensus 152 ~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~v 231 (464)
T 3v7d_B 152 KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 231 (464)
T ss_dssp TEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEE
T ss_pred CcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEE
Confidence 34677888999999999987 4499999999999999975 4567788999999999998 57889999999999999
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~ 267 (473)
||+.+............. . .......... .......+|...|.++ ++++++|++|+.|+.|++||+.++
T Consensus 232 wd~~~~~~~~~~~~~~~~--~-~~~~~~~~~~------~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~ 300 (464)
T 3v7d_B 232 WKLPKESSVPDHGEEHDY--P-LVFHTPEENP------YFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQM 300 (464)
T ss_dssp EECCCCCCC------CCS--S-EEESCGGGCT------TEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTT
T ss_pred eeCCCCcccccccccCCc--c-eEeeccCCCe------EEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCC
Confidence 999877543322111000 0 0000000000 0012334588888877 567899999999999999999999
Q ss_pred eeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC
Q 012007 268 KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG 346 (473)
Q Consensus 268 ~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg 346 (473)
+++..+.+|...|.++++++++ .+++|+.||.|++||++.+ .....+.+|...|.+++|+ +.+|++++.||
T Consensus 301 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~------~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg 372 (464)
T 3v7d_B 301 KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG------ELMYTLQGHTALVGLLRLS--DKFLVSAAADG 372 (464)
T ss_dssp EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEEC--SSEEEEEETTS
T ss_pred cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCC
Confidence 9999999999999999999987 9999999999999999732 3456778899999999997 57999999999
Q ss_pred cEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEE-ecCCCCceeEEEEecCCCCC
Q 012007 347 LVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAV-LTGHTGPVKCLAVEEDRDHD 425 (473)
Q Consensus 347 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~~ 425 (473)
.|++||+++..........+...+.++++++++|++|+ ||.|++||+.+ .+++.. +.+|...|.+++|+.. .
T Consensus 373 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~---g~~~~~~~~~~~~~v~~v~~~~~-~-- 445 (464)
T 3v7d_B 373 SIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRS---GKLVHANILKDADQIWSVNFKGK-T-- 445 (464)
T ss_dssp EEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTT---CCEEESCTTTTCSEEEEEEEETT-E--
T ss_pred cEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCC---CcEEehhhccCCCcEEEEEecCC-E--
Confidence 99999998865554444555667789999999999999 89999999998 456664 6788999999999833 2
Q ss_pred cccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 426 HEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 426 ~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
++++++.||.+.+|-+
T Consensus 446 -----------l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 446 -----------LVAAVEKDGQSFLEIL 461 (464)
T ss_dssp -----------EEEEEEETTEEEEEEE
T ss_pred -----------EEEEEEeCCeEEEEEe
Confidence 6777778887665543
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-34 Score=288.09 Aligned_cols=295 Identities=15% Similarity=0.179 Sum_probs=227.9
Q ss_pred cceeeeeeecccEEEEEec--CC-EEEEeeCCCcEEEeeCC--ccccccccCcc---cEEEEEEeCC-CCEEEEEeCCCe
Q 012007 114 GLIGSIVRKEGHIYSLAAS--GD-LLYTGSDSKNIRVWKNL--KEFSGFKSNSG---LVKAIIISGD-SNKIFTGHQDGK 184 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~--g~-~l~tg~~dg~i~vwd~~--~~~~~~~~h~~---~V~~l~~s~~-~~~l~s~~~dg~ 184 (473)
..+..+.+|.+.|.++.++ ++ +|++|+.||.|++||.. +.+..+.+|.. .|.+++|+|+ +++|++++.||.
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 230 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK 230 (615)
T ss_dssp CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC
T ss_pred CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe
Confidence 3567788899999998876 54 89999999999999965 45667788998 9999999999 999999999999
Q ss_pred EEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEc
Q 012007 185 IRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264 (473)
Q Consensus 185 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~ 264 (473)
|++||+.+++......... ..|...|.+++|+ ++.+|++++.|+.|++||+
T Consensus 231 i~vwd~~~~~~~~~~~~~~----------------------------~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~ 281 (615)
T 1pgu_A 231 ISCFDGKSGEFLKYIEDDQ----------------------------EPVQGGIFALSWL-DSQKFATVGADATIRVWDV 281 (615)
T ss_dssp EEEEETTTCCEEEECCBTT----------------------------BCCCSCEEEEEES-SSSEEEEEETTSEEEEEET
T ss_pred EEEEECCCCCEeEEecccc----------------------------cccCCceEEEEEc-CCCEEEEEcCCCcEEEEEC
Confidence 9999998876544331100 0288999999999 9999999999999999999
Q ss_pred CCCeeeEEeecC----CCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeecc------------------
Q 012007 265 SDCKCLESINAH----DDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLK------------------ 322 (473)
Q Consensus 265 ~~~~~~~~~~~~----~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~------------------ 322 (473)
++++.+..+..+ ...+.++.+..+.++++++.||.|++||+.... ....+..
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~------~~~~~~~~~~~v~~~~~~~l~~~~~ 355 (615)
T 1pgu_A 282 TTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDE------VLKTISGHNKGITALTVNPLISGSY 355 (615)
T ss_dssp TTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEE------EEEEECCCSSCEEEEETTTTEEEET
T ss_pred CCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCc------EEEEEeCCCCCEEEEEecCcEEECC
Confidence 999999998876 367788888755699999999999999986321 1122222
Q ss_pred ---------------CCccEEEEEEccC----------------------------------------------------
Q 012007 323 ---------------HENAVTALAVNQE---------------------------------------------------- 335 (473)
Q Consensus 323 ---------------~~~~v~~l~~~~~---------------------------------------------------- 335 (473)
|...|.+++| ++
T Consensus 356 dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 434 (615)
T 1pgu_A 356 DGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQS 434 (615)
T ss_dssp TSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEET
T ss_pred CCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEec
Confidence 3333333333 22
Q ss_pred ---------------------CCEEEEeCC-CCcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEE
Q 012007 336 ---------------------SAVVYCGSS-DGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICL 391 (473)
Q Consensus 336 ---------------------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~i 391 (473)
+++|++++. |+.|++||+.+.......+.+|...+.++.+ ++++|++++.||.|++
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~i 514 (615)
T 1pgu_A 435 FTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILL 514 (615)
T ss_dssp TTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred cCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEE
Confidence 334444444 5555555554432211344567777777665 7999999999999999
Q ss_pred EecCCCCceeEEEEecC-CCCceeEEEEec----------CCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 392 WRREESGAHSCLAVLTG-HTGPVKCLAVEE----------DRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 392 wd~~~~~~~~~~~~~~~-h~~~V~~l~~~~----------~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
||+.+ .+++..+.+ |...|++++|+| ++. +|++++.||.|++|++..+.....
T Consensus 515 w~~~~---~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~-------------~l~~~~~dg~i~iw~~~~~~~~~~ 578 (615)
T 1pgu_A 515 YDLQS---REVKTSRWAFRTSKINAISWKPAEKGANEEEIEED-------------LVATGSLDTNIFIYSVKRPMKIIK 578 (615)
T ss_dssp EETTT---TEEEECCSCCCSSCEEEEEECCCC------CCSCC-------------EEEEEETTSCEEEEESSCTTCCEE
T ss_pred eeCCC---CcceeEeecCCCCceeEEEEcCccccccccccCCC-------------EEEEEcCCCcEEEEECCCCceech
Confidence 99988 577788888 999999999999 887 899999999999999998744433
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-34 Score=275.71 Aligned_cols=280 Identities=17% Similarity=0.241 Sum_probs=218.8
Q ss_pred EEecCC---EEEEeeCCCcEEEeeCCc------cccccccCcccEEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCeeeE
Q 012007 129 LAASGD---LLYTGSDSKNIRVWKNLK------EFSGFKSNSGLVKAIIISG-DSNKIFTGHQDGKIRIWKVSRKNASVH 198 (473)
Q Consensus 129 ~~~~g~---~l~tg~~dg~i~vwd~~~------~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~ 198 (473)
++++++ ++++|+.||.|+||+..+ .+..+.+|.+.|.+++|+| ++++|++|+.||.|++||+.++.....
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~ 119 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP 119 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc
Confidence 444444 344578899999999643 3456788999999999999 899999999999999999987743110
Q ss_pred EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCC-CEEEEEeCCCCEEEEEcCCCeeeEEe--ec
Q 012007 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRISDCKCLESI--NA 275 (473)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~--~~ 275 (473)
.. .......+|...|.+++|+|++ .+|++++.|+.|++||+++++.+..+ ..
T Consensus 120 ~~-------------------------~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 174 (402)
T 2aq5_A 120 LR-------------------------EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV 174 (402)
T ss_dssp BC-------------------------SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTT
T ss_pred cC-------------------------CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCC
Confidence 00 0011223599999999999998 69999999999999999999999999 78
Q ss_pred CCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeee-ccCCcc-EEEEEEccCCCEEEEe---CCCCcEE
Q 012007 276 HDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVL-LKHENA-VTALAVNQESAVVYCG---SSDGLVN 349 (473)
Q Consensus 276 ~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~-v~~l~~~~~~~~l~~~---~~dg~i~ 349 (473)
|...|.+++|+|++ +|++++.||.|++||++.. . ....+ ..|... +.+++|+|++.+|++| +.|+.|+
T Consensus 175 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~ 248 (402)
T 2aq5_A 175 HPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG-----T-VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVA 248 (402)
T ss_dssp CCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT-----E-EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEE
T ss_pred CCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC-----c-eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEE
Confidence 99999999999988 8999999999999999732 2 23344 567665 8999999999999999 8999999
Q ss_pred EEecCCcccccceee-cCcceEE--EEEecCCEEEE-EeCCCcEEEEecCCCCc-eeEEEEecCCCCceeEEEEecCCCC
Q 012007 350 FWECEKHLSHGGVLR-GHKMAVL--CLAAAGNLVFS-GSADRNICLWRREESGA-HSCLAVLTGHTGPVKCLAVEEDRDH 424 (473)
Q Consensus 350 iwd~~~~~~~~~~~~-~~~~~v~--~~~~~~~~l~s-~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~ 424 (473)
+||+++......... .|...+. ++++++++|++ |+.||.|++||+.++.. ...+..+. |...|.+++|+|++.
T Consensus 249 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~~- 326 (402)
T 2aq5_A 249 LWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKRG- 326 (402)
T ss_dssp EEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGGG-
T ss_pred EEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCcccceEEecccc-
Confidence 999987654333322 4444454 45667888864 55799999999998543 33444444 678999999999987
Q ss_pred CcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 425 DHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 425 ~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
++++ .|+.+++|++..+
T Consensus 327 ------------~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 327 ------------LEVN--KCEIARFYKLHER 343 (402)
T ss_dssp ------------SCGG--GTEEEEEEEEETT
T ss_pred ------------ccee--cceeEEEEEcCCC
Confidence 4543 5679999999864
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-34 Score=313.25 Aligned_cols=290 Identities=20% Similarity=0.289 Sum_probs=237.8
Q ss_pred cceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeC--CCCEEEEEeCCCeEEE
Q 012007 114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISG--DSNKIFTGHQDGKIRI 187 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~--~~~~l~s~~~dg~i~v 187 (473)
..+..+.+|.+.|.+++++ |++|++|+.||.|+|||.. +.+..+.+|...|.+++|++ ++.++++|+.||.|++
T Consensus 648 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~v 727 (1249)
T 3sfz_A 648 EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 727 (1249)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEE
T ss_pred CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEE
Confidence 4567788999999998874 8899999999999999975 55677889999999999999 5568999999999999
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~ 267 (473)
||+.++....... +|...|.+++|+|++++|++++.||.|++||+.++
T Consensus 728 wd~~~~~~~~~~~--------------------------------~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~ 775 (1249)
T 3sfz_A 728 WDLNQKECRNTMF--------------------------------GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 775 (1249)
T ss_dssp EETTSSSEEEEEC--------------------------------CCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGT
T ss_pred EECCCcchhheec--------------------------------CCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCC
Confidence 9999876543322 48888999999999889999999999999988766
Q ss_pred eeeEEee-------------------------------------------------------cCCCceeEEEEcCCC-EE
Q 012007 268 KCLESIN-------------------------------------------------------AHDDAINSVVAGFDS-LV 291 (473)
Q Consensus 268 ~~~~~~~-------------------------------------------------------~~~~~v~~l~~~~~~-~l 291 (473)
+....+. +|...|.+++|+|++ .+
T Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 855 (1249)
T 3sfz_A 776 NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLA 855 (1249)
T ss_dssp EEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEE
T ss_pred cccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEE
Confidence 5443321 677889999999987 89
Q ss_pred EEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccc-----------
Q 012007 292 FTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHG----------- 360 (473)
Q Consensus 292 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----------- 360 (473)
++++.||.|++||+.. ......+.+|...|++++|+|++.+|++++.||.|++||+.+.....
T Consensus 856 ~~~~~dg~v~vwd~~~------~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 929 (1249)
T 3sfz_A 856 VIALSQYCVELWNIDS------RLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV 929 (1249)
T ss_dssp EEECSSSCEEEEETTT------TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEE
T ss_pred EEEeCCCeEEEEEcCC------CceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEE
Confidence 9999999999999863 23456678899999999999999999999999999999975321100
Q ss_pred -------------------------c--eeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCce
Q 012007 361 -------------------------G--VLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPV 413 (473)
Q Consensus 361 -------------------------~--~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V 413 (473)
. ..........+++++++++++|+.||.|++|++.+ ...+..+.+|...|
T Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~---~~~~~~~~~h~~~v 1006 (1249)
T 3sfz_A 930 FQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN---NRVFSSGVGHKKAV 1006 (1249)
T ss_dssp EETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT---TSCEEECCCCSSCC
T ss_pred EcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC---CceeeecccCCCce
Confidence 0 00111233355667899999999999999999988 46677888999999
Q ss_pred eEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 414 KCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
++++|+|++. +|++++.||.|++|++..+..
T Consensus 1007 ~~l~~s~dg~-------------~l~s~~~dg~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A 1007 RHIQFTADGK-------------TLISSSEDSVIQVWNWQTGDY 1037 (1249)
T ss_dssp CCEEECSSSS-------------CEEEECSSSBEEEEETTTTEE
T ss_pred EEEEECCCCC-------------EEEEEcCCCEEEEEECCCCce
Confidence 9999999998 799999999999999887643
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-34 Score=270.67 Aligned_cols=260 Identities=20% Similarity=0.208 Sum_probs=210.4
Q ss_pred cceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC----ccccccccCcccEEEEEEeCC--CCEEEEEeCCCeE
Q 012007 114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL----KEFSGFKSNSGLVKAIIISGD--SNKIFTGHQDGKI 185 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~----~~~~~~~~h~~~V~~l~~s~~--~~~l~s~~~dg~i 185 (473)
.++..+.+|.+.|.+++++ +++||+|+.||.|+|||+. +.+..+.+|.+.|.+++|+++ +++|++|+.||.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 3567889999999998865 8899999999999999864 345678889999999999987 8999999999999
Q ss_pred EEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC--CCEEEEEeCCCCEEEEE
Q 012007 186 RIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE--QGLLYSGSWDKTLKVWR 263 (473)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~s~s~dg~v~vwd 263 (473)
++||+.+++....... ..|...|.+++|+|+ +.+|++++.|+.|++||
T Consensus 82 ~iwd~~~~~~~~~~~~------------------------------~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d 131 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVH------------------------------AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 131 (379)
T ss_dssp EEEEEETTEEEEEEEE------------------------------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCceeEeeee------------------------------cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEe
Confidence 9999987753222221 138899999999999 99999999999999999
Q ss_pred cCCCe--eeEEeecCCCceeEEEEcC-------------CC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccE
Q 012007 264 ISDCK--CLESINAHDDAINSVVAGF-------------DS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAV 327 (473)
Q Consensus 264 ~~~~~--~~~~~~~~~~~v~~l~~~~-------------~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v 327 (473)
+.++. ....+..|...|.+++|+| ++ ++++++.||.|++||++... ........+..|...|
T Consensus 132 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~h~~~v 209 (379)
T 3jrp_A 132 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--QTYVLESTLEGHSDWV 209 (379)
T ss_dssp CCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT--TEEEEEEEECCCSSCE
T ss_pred cCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC--cceeeEEEEecccCcE
Confidence 98873 4456678999999999999 34 89999999999999997543 2334556778899999
Q ss_pred EEEEEccC---CCEEEEeCCCCcEEEEecCCcccc----cceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCC
Q 012007 328 TALAVNQE---SAVVYCGSSDGLVNFWECEKHLSH----GGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESG 398 (473)
Q Consensus 328 ~~l~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~ 398 (473)
.+++|+|+ +.+|++++.||.|++||++..... ......|...+.+++ +++++|++++.||.|++|++....
T Consensus 210 ~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 210 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred eEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 99999999 899999999999999999875321 122233666776555 579999999999999999998644
Q ss_pred ceeEEEE
Q 012007 399 AHSCLAV 405 (473)
Q Consensus 399 ~~~~~~~ 405 (473)
....+..
T Consensus 290 ~~~~~~~ 296 (379)
T 3jrp_A 290 KWEPAGE 296 (379)
T ss_dssp EEEEEEE
T ss_pred ccccccc
Confidence 4444443
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-34 Score=298.31 Aligned_cols=200 Identities=10% Similarity=0.050 Sum_probs=165.4
Q ss_pred eeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCCcccc-ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC
Q 012007 118 SIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKEFS-GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKN 194 (473)
Q Consensus 118 ~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~~~~-~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~ 194 (473)
...+|.+.|.+++++ +++||+|+.||+|+||+...... ....|...|.+++|+| +++|++++.|+.|++||+.+++
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~ 90 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK 90 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS
T ss_pred cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc
Confidence 345899999988865 88999999999999999764322 2234788999999999 8899999999999999999876
Q ss_pred eeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee----
Q 012007 195 ASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL---- 270 (473)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~---- 270 (473)
...... |...|++++|+|++++|++|+.||.|++||++++++.
T Consensus 91 ~~~~~~---------------------------------~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i 137 (902)
T 2oaj_A 91 VLTTVF---------------------------------VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL 137 (902)
T ss_dssp EEEEEE---------------------------------CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEE
T ss_pred EEEEEc---------------------------------CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccccee
Confidence 543322 6678999999999999999999999999999988764
Q ss_pred -------EEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeec------------------cC
Q 012007 271 -------ESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLL------------------KH 323 (473)
Q Consensus 271 -------~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~------------------~~ 323 (473)
..+.+|...|.+++|+|++ .+++|+.||.| +||++... ....+. .|
T Consensus 138 ~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~h 210 (902)
T 2oaj_A 138 DNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE------IKQSFIYELPPFAPGGDFSEKTNEKR 210 (902)
T ss_dssp CCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE------EEEEECCCBCTTCCCSTTCCCTTSCB
T ss_pred ccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc------eEEEEecccCCcCCCccccccccccc
Confidence 2346788999999999973 89999999999 99997432 122222 34
Q ss_pred CccEEEEEEccCCCEEEEeCCCCcEEEEecCCccc
Q 012007 324 ENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLS 358 (473)
Q Consensus 324 ~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 358 (473)
...|++++|+|++.+|++++.||.|++||++++..
T Consensus 211 ~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 211 TPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp CCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE
Confidence 57899999999999999999999999999987543
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=295.36 Aligned_cols=317 Identities=12% Similarity=0.133 Sum_probs=222.3
Q ss_pred eeeeecccEEEEEecC---CEEEEeeCCCcEEEeeCCc--ccccccc------------------CcccEEEEEEeCCCC
Q 012007 118 SIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWKNLK--EFSGFKS------------------NSGLVKAIIISGDSN 174 (473)
Q Consensus 118 ~l~~h~~~V~~~~~~g---~~l~tg~~dg~i~vwd~~~--~~~~~~~------------------h~~~V~~l~~s~~~~ 174 (473)
.+.+|.+.|.+++++. .+|++|+.||.| +||+.. .+..+.. |...|.+++|+|+|+
T Consensus 146 ~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~ 224 (902)
T 2oaj_A 146 FPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL 224 (902)
T ss_dssp CSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS
T ss_pred ccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC
Confidence 3467889999998864 589999999999 999763 2333433 467899999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCCeeeEEeec----c-------------cccc-------------ceeEeec-CCC----cc
Q 012007 175 KIFTGHQDGKIRIWKVSRKNASVHKRVG----S-------------LPTF-------------KDYVKSS-VNP----KN 219 (473)
Q Consensus 175 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~----~-------------~~~~-------------~~~~~~~-~~~----~~ 219 (473)
+|++|+.||.|++||+.+++........ . .... ..++.+. .+. ..
T Consensus 225 ~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~ 304 (902)
T 2oaj_A 225 HIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQS 304 (902)
T ss_dssp EEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCC
T ss_pred EEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCce
Confidence 9999999999999999887654431110 0 0000 0111111 110 01
Q ss_pred --eEEEee--------------------cceeeEeeccCCeeEEEEcC----------CCCEEEEEeCCCCEEEEEcCCC
Q 012007 220 --YVEVRR--------------------NRSVLKIRHYDAVSCLSLNA----------EQGLLYSGSWDKTLKVWRISDC 267 (473)
Q Consensus 220 --~~~~~~--------------------~~~~~~~~~~~~v~~l~~~~----------~~~~l~s~s~dg~v~vwd~~~~ 267 (473)
.+.... ......+.+...|..+.+.+ +...+++++.|+.|++||+.++
T Consensus 305 v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g 384 (902)
T 2oaj_A 305 LTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSG 384 (902)
T ss_dssp EEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTC
T ss_pred EEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCC
Confidence 111100 01111123567788888765 3447899999999999999777
Q ss_pred eeeEE-------e----------------------------------ecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeC
Q 012007 268 KCLES-------I----------------------------------NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRR 305 (473)
Q Consensus 268 ~~~~~-------~----------------------------------~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~ 305 (473)
..... + .+|...+..++++|++ +|++|+.|++|++||+
T Consensus 385 ~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~ 464 (902)
T 2oaj_A 385 IFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDA 464 (902)
T ss_dssp CEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEES
T ss_pred CcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEEC
Confidence 43321 2 2333344445556776 8999999999999999
Q ss_pred cccCCCcceeeeeee-----ccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcc-----------------------
Q 012007 306 ELQGKGTKHCLAQVL-----LKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHL----------------------- 357 (473)
Q Consensus 306 ~~~~~~~~~~~~~~~-----~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~----------------------- 357 (473)
..+.......+...+ .+|...|.+++|+|++++||+|+.||+|+|||+.+..
T Consensus 465 ~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (902)
T 2oaj_A 465 SHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLN 544 (902)
T ss_dssp SCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGG
T ss_pred CCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeecccc
Confidence 754321111111111 2788999999999999999999999999999987542
Q ss_pred ---------------------cccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCCceeEEE-----Eec-C
Q 012007 358 ---------------------SHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLA-----VLT-G 408 (473)
Q Consensus 358 ---------------------~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~-~ 408 (473)
.....+.+|...|.+++ ++| +||+|+.|++|+|||+++. ..+. .+. +
T Consensus 545 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~---~~~~~~~~~~~~~g 620 (902)
T 2oaj_A 545 NTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGP---AIIYMENIREISGA 620 (902)
T ss_dssp GSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTT---EEEEEEEGGGTCSS
T ss_pred CCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCC---eEEEEeehhHhccc
Confidence 11345667888886655 679 9999999999999998773 3332 343 8
Q ss_pred CCCceeEEEEe-----cCC---CCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 409 HTGPVKCLAVE-----EDR---DHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 409 h~~~V~~l~~~-----~~~---~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
|.+.|++|+|+ ||+ . +|++|+.|++|++|++
T Consensus 621 h~~~V~sv~Fs~~~~~~Dg~~~~-------------~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 621 QSACVTCIEFVIMEYGDDGYSSI-------------LMVCGTDMGEVITYKI 659 (902)
T ss_dssp CCCCEEEEEEEEEECTTSSSEEE-------------EEEEEETTSEEEEEEE
T ss_pred cccceEEEEEEEEecCCCCCcce-------------EEEEEecCCcEEEEEE
Confidence 99999999999 885 4 8999999999999999
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=287.19 Aligned_cols=286 Identities=15% Similarity=0.139 Sum_probs=232.3
Q ss_pred ecccEE--EEEecCCEEEEeeCCCcEEEeeCC------ccccccccCccc-EEEEEEeC--CCCEEEEEeCCCeEEEEeC
Q 012007 122 KEGHIY--SLAASGDLLYTGSDSKNIRVWKNL------KEFSGFKSNSGL-VKAIIISG--DSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 122 h~~~V~--~~~~~g~~l~tg~~dg~i~vwd~~------~~~~~~~~h~~~-V~~l~~s~--~~~~l~s~~~dg~i~vwd~ 190 (473)
|.+.|. +++++|++|++++ ++.|+|||.. +....+.+|.+. |.+++|+| ++++|++|+.||.|++||+
T Consensus 17 ~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~ 95 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW 95 (615)
T ss_dssp CTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE
T ss_pred ccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeC
Confidence 344444 4666799999999 7899999975 356678899999 99999999 9999999999999999999
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC----CCEEEEEcCC
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD----KTLKVWRISD 266 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d----g~v~vwd~~~ 266 (473)
.++....... .........|...|.+++|+|++++|++++.+ +.|++|| .
T Consensus 96 ~~~~~~~~~~------------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~ 149 (615)
T 1pgu_A 96 TFDKESNSVE------------------------VNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--S 149 (615)
T ss_dssp EEEGGGTEEE------------------------EEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--T
T ss_pred CCCccccccc------------------------ccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--C
Confidence 6541000000 00001112488999999999999999999987 6788887 6
Q ss_pred CeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCc---cEEEEEEccC-CCEEE
Q 012007 267 CKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHEN---AVTALAVNQE-SAVVY 340 (473)
Q Consensus 267 ~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~---~v~~l~~~~~-~~~l~ 340 (473)
++.+..+..|...|.++.|+|++ .+++++.|+.|++||+.. ......+..|.. .|++++|+|+ +++|+
T Consensus 150 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 223 (615)
T 1pgu_A 150 GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP------FKFSASDRTHHKQGSFVRDVEFSPDSGEFVI 223 (615)
T ss_dssp CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT------BEEEEEECSSSCTTCCEEEEEECSTTCCEEE
T ss_pred CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC------cceeeeecccCCCCceEEEEEECCCCCCEEE
Confidence 77888999999999999999998 799999999999999863 234566778888 9999999999 99999
Q ss_pred EeCCCCcEEEEecCCcccccceee---cCcceEEEEEe-cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCC----CCc
Q 012007 341 CGSSDGLVNFWECEKHLSHGGVLR---GHKMAVLCLAA-AGNLVFSGSADRNICLWRREESGAHSCLAVLTGH----TGP 412 (473)
Q Consensus 341 ~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h----~~~ 412 (473)
+++.||.|++||++++........ +|...+.++.+ ++++|++++.|+.|++||+.+ .+.+..+..+ ...
T Consensus 224 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~---~~~~~~~~~~~~~~~~~ 300 (615)
T 1pgu_A 224 TVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT---SKCVQKWTLDKQQLGNQ 300 (615)
T ss_dssp EEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTT---TEEEEEEECCTTCGGGC
T ss_pred EEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCC---CcEEEEEcCCCCcccCc
Confidence 999999999999987655443325 78888888877 799999999999999999998 4666666665 467
Q ss_pred eeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 413 VKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 413 V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
+.++.|. ++. ++++++.||.|++|++..+..
T Consensus 301 ~~~~~~~-~~~-------------~l~~~~~~g~i~~~d~~~~~~ 331 (615)
T 1pgu_A 301 QVGVVAT-GNG-------------RIISLSLDGTLNFYELGHDEV 331 (615)
T ss_dssp EEEEEEE-ETT-------------EEEEEETTSCEEEEETTEEEE
T ss_pred eeEEEeC-CCC-------------eEEEEECCCCEEEEECCCCcE
Confidence 8888886 665 899999999999999987543
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-33 Score=260.57 Aligned_cols=252 Identities=22% Similarity=0.351 Sum_probs=211.2
Q ss_pred ccccccCcccEEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEe
Q 012007 154 FSGFKSNSGLVKAIIISGD-SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKI 232 (473)
Q Consensus 154 ~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (473)
..++++|.+.|++|+|+|+ +++|+||+.||+|+|||+...+....... ....
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~---------------------------~~l~ 83 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ---------------------------RALR 83 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEE---------------------------EEEC
T ss_pred EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceee---------------------------EEEe
Confidence 3468999999999999997 68999999999999999987653222111 1122
Q ss_pred eccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCC
Q 012007 233 RHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 233 ~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
+|...|.+++|+|++++|++|+.|+.|++|+............+...+..+.+.+++ .|++++.|+.+++||+.
T Consensus 84 ~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~----- 158 (340)
T 4aow_A 84 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL----- 158 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-----
T ss_pred CCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeC-----
Confidence 599999999999999999999999999999999999999888899999999998887 89999999999999986
Q ss_pred cceeeeeeeccCCccEEEEEEccCC--CEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCC
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQES--AVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADR 387 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg 387 (473)
...........|...+..++|++++ .++++++.|+.|++||+++... ...+.+|...|.+++ +++++|++|+.||
T Consensus 159 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg 237 (340)
T 4aow_A 159 GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL-KTNHIGHTGYLNTVTVSPDGSLCASGGKDG 237 (340)
T ss_dssp SCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred CCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce-eeEecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 3334455667889999999998864 6788999999999999987544 456778998887766 5689999999999
Q ss_pred cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 388 NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
.|++||+.+ ..++..+..+ ..|.+++|+|++. +++++.|+.|++||+....
T Consensus 238 ~i~iwd~~~---~~~~~~~~~~-~~v~~~~~~~~~~--------------~~~~~~d~~i~iwd~~~~~ 288 (340)
T 4aow_A 238 QAMLWDLNE---GKHLYTLDGG-DIINALCFSPNRY--------------WLCAATGPSIKIWDLEGKI 288 (340)
T ss_dssp EEEEEETTT---TEEEEEEECS-SCEEEEEECSSSS--------------EEEEEETTEEEEEETTTTE
T ss_pred eEEEEEecc---CceeeeecCC-ceEEeeecCCCCc--------------eeeccCCCEEEEEECCCCe
Confidence 999999998 5667766654 6799999999875 6677789999999997653
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-34 Score=282.86 Aligned_cols=266 Identities=13% Similarity=0.065 Sum_probs=197.3
Q ss_pred eeeecccEEEEEe--cC---------CEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEE
Q 012007 119 IVRKEGHIYSLAA--SG---------DLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187 (473)
Q Consensus 119 l~~h~~~V~~~~~--~g---------~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~v 187 (473)
+..+.+.|++++| ++ ++||+|+.++.. -..+|+++.|++++.|++|+|
T Consensus 129 ~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~---------------------~~~~~~~~~laS~s~D~tI~i 187 (524)
T 2j04_B 129 IYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD---------------------EPLNEHLEMFDKEKHSSCIQI 187 (524)
T ss_dssp EEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC---------------------------------------CEEEEE
T ss_pred EEECCCceeEEEecccCCCCccCcCCeEEEEEEecccC---------------------CccchhhhhhccCCCCceEEE
Confidence 3446788888765 34 689999876420 013689999999999999999
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC------CCEEEEEeCCCCEEE
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE------QGLLYSGSWDKTLKV 261 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~------~~~l~s~s~dg~v~v 261 (473)
||+.+++...... ....+|.+.|.+++|+|+ +.+|++++.||+|++
T Consensus 188 Wd~~~~~~~~~~~----------------------------~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgtvrl 239 (524)
T 2j04_B 188 FKMNTSTLHCVKV----------------------------QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINF 239 (524)
T ss_dssp EEEETTTCCEEEE----------------------------EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEE
T ss_pred EEccCCCCCceEE----------------------------EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEE
Confidence 9997765321110 011237789999999996 579999999999999
Q ss_pred EEcCCCee-----------eEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEE
Q 012007 262 WRISDCKC-----------LESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTAL 330 (473)
Q Consensus 262 wd~~~~~~-----------~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l 330 (473)
||+..++. ...+.+|...|.+++|++++.|++|+.||+|++||++.. ..+...+..|...|+++
T Consensus 240 Wd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~-----~~~~~~~~~H~~~V~sv 314 (524)
T 2j04_B 240 LEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDP-----EVPSFYDQVHDSYILSV 314 (524)
T ss_dssp EECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBC-----SSCSEEEECSSSCEEEE
T ss_pred EEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCC-----CCceEEeecccccEEEE
Confidence 99976642 246778999999999998889999999999999999743 22344577899999999
Q ss_pred --EEccCC-CEEEEeCCCCcEEEEecCCcccccceeecCcc----eEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEE
Q 012007 331 --AVNQES-AVVYCGSSDGLVNFWECEKHLSHGGVLRGHKM----AVLCLAAAGNLVFSGSADRNICLWRREESGAHSCL 403 (473)
Q Consensus 331 --~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 403 (473)
+|++++ .+|++++.|++|+|||+++..... .+.+|.. ...+++|++..|++++.|++|++||++. ..++
T Consensus 315 ~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~-~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~---~~~~ 390 (524)
T 2j04_B 315 STAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK-TTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA---AFAV 390 (524)
T ss_dssp EEECCTTSCCEEEEEETTSEEEEECGGGHHHHC-EEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTC---TTCC
T ss_pred EEEcCCCCCeEEEEeccCCeEEEEECCCCCccc-ccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcc---cccc
Confidence 568887 899999999999999998754432 3444432 2367788899999999999999999988 3455
Q ss_pred EEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 404 AVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 404 ~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
..+.+|.+.|++|+|+|+++ +|++|+.||+|++|++...
T Consensus 391 ~~l~gH~~~V~sva~Sp~g~-------------~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 391 HPLVSRETTITAIGVSRLHP-------------MVLAGSADGSLIITNAARR 429 (524)
T ss_dssp EEEEECSSCEEEEECCSSCC-------------BCEEEETTTEEECCBSCSS
T ss_pred eeeecCCCceEEEEeCCCCC-------------eEEEEECCCEEEEEechHh
Confidence 66778999999999999998 8999999999999998653
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=278.42 Aligned_cols=270 Identities=13% Similarity=0.259 Sum_probs=206.6
Q ss_pred EecCCEEEEeeCCCcEEEeeCC-cccccc-ccCcccEEEEEEeC-CCCEEEEEeCCCeEEEEeCCC---CCeeeEEeecc
Q 012007 130 AASGDLLYTGSDSKNIRVWKNL-KEFSGF-KSNSGLVKAIIISG-DSNKIFTGHQDGKIRIWKVSR---KNASVHKRVGS 203 (473)
Q Consensus 130 ~~~g~~l~tg~~dg~i~vwd~~-~~~~~~-~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~vwd~~~---~~~~~~~~~~~ 203 (473)
.++++.+++++ .|+.. +.+..+ .+|.+.|++++|+| ++++|++|+.||.|++||+.+ +...
T Consensus 36 ~~~~~~~~~~~------~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~------- 102 (437)
T 3gre_A 36 GPIQEIVRSPN------MGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVY------- 102 (437)
T ss_dssp CCCCCCCCCCC------GGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCC-------
T ss_pred CCccccccccc------cccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccc-------
Confidence 34455555443 37754 445566 78999999999999 999999999999999999865 2210
Q ss_pred ccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC---CCeeeEEeec-----
Q 012007 204 LPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS---DCKCLESINA----- 275 (473)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~---~~~~~~~~~~----- 275 (473)
......+|...|.+++|+|++++|++|+.||.|++||+. +++.+..+..
T Consensus 103 -----------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~ 159 (437)
T 3gre_A 103 -----------------------SSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRK 159 (437)
T ss_dssp -----------------------SCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred -----------------------ceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEE
Confidence 001122489999999999999999999999999999995 5544443332
Q ss_pred -------CCCceeEEE--EcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeecc--CCccEEEEEEccCCCEEEEeC
Q 012007 276 -------HDDAINSVV--AGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLK--HENAVTALAVNQESAVVYCGS 343 (473)
Q Consensus 276 -------~~~~v~~l~--~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~~~~ 343 (473)
+...+.++. +++++ ++++++.||.|++||++... ....+.. |...|++++|+|++.+|++|+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 233 (437)
T 3gre_A 160 INLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE------RLQIIENSPRHGAVSSICIDEECCVLILGT 233 (437)
T ss_dssp EEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC------EEEEEECCGGGCCEEEEEECTTSCEEEEEE
T ss_pred EEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe------eeEEEccCCCCCceEEEEECCCCCEEEEEc
Confidence 445566666 44555 89999999999999997422 3344445 889999999999999999999
Q ss_pred CCCcEEEEecCCcccccceeecCcceEEEEEe------cCCEEEEEeCCCcEEEEecCCCCceeEEEEecC---------
Q 012007 344 SDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA------AGNLVFSGSADRNICLWRREESGAHSCLAVLTG--------- 408 (473)
Q Consensus 344 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------- 408 (473)
.||.|++||+++..........|...+.++.+ ++.+|++|+.||.|++||+.++ .++..+.+
T Consensus 234 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~ 310 (437)
T 3gre_A 234 TRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG---HCQYAFINSDEQPSMEH 310 (437)
T ss_dssp TTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT---EEEEEEESSSSCCCGGG
T ss_pred CCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC---cEEEEEEcCCCCCccce
Confidence 99999999999865543333377778888743 3669999999999999999883 44544443
Q ss_pred -----------------CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 409 -----------------HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 409 -----------------h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
|...|++++|+ ++. +|++|+.||.|++||+.+++..
T Consensus 311 ~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-------------~l~s~~~d~~i~~wd~~~~~~~ 363 (437)
T 3gre_A 311 FLPIEKGLEELNFCGIRSLNALSTISVS-NDK-------------ILLTDEATSSIVMFSLNELSSS 363 (437)
T ss_dssp GSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-------------EEEEEGGGTEEEEEETTCGGGC
T ss_pred ecccccccccceecccccCCceEEEEEC-Cce-------------EEEecCCCCeEEEEECCCcccc
Confidence 55667778887 444 8999999999999999887644
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=294.00 Aligned_cols=252 Identities=24% Similarity=0.326 Sum_probs=220.4
Q ss_pred cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEe
Q 012007 153 EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKI 232 (473)
Q Consensus 153 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (473)
....+.+|.+.|.+++|+|++++|++|+.||.|++||+.++.......
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~-------------------------------- 52 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ-------------------------------- 52 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE--------------------------------
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEe--------------------------------
Confidence 345678899999999999999999999999999999998876543332
Q ss_pred eccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCC
Q 012007 233 RHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 233 ~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
+|...|.+++|+|++++|++|+.||.|++||+.+++.+..+..|...|.+++|+|++ +|++++.||.|++||++.
T Consensus 53 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~---- 128 (814)
T 3mkq_A 53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN---- 128 (814)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGG----
T ss_pred cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCC----
Confidence 388999999999999999999999999999999999999999999999999999998 899999999999999973
Q ss_pred cceeeeeeeccCCccEEEEEEcc-CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEE--EEEe--cCCEEEEEeCC
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVL--CLAA--AGNLVFSGSAD 386 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~--~~~~--~~~~l~s~~~d 386 (473)
.......+..|...|.+++|+| ++.+|++++.||.|++||+............+...+. ++++ ++.+|++++.|
T Consensus 129 -~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 207 (814)
T 3mkq_A 129 -NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207 (814)
T ss_dssp -TSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT
T ss_pred -CceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC
Confidence 3345567778999999999999 8899999999999999999876555444444435554 4455 78999999999
Q ss_pred CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 387 RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 387 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
|.|++||+.+ ..++..+.+|...|++++|+|++. +|++++.||.|++|++..+..
T Consensus 208 g~i~~~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~-------------~l~~~~~dg~v~vwd~~~~~~ 262 (814)
T 3mkq_A 208 LTIKIWDYQT---KSCVATLEGHMSNVSFAVFHPTLP-------------IIISGSEDGTLKIWNSSTYKV 262 (814)
T ss_dssp SEEEEEETTT---TEEEEEEECCSSCEEEEEECSSSS-------------EEEEEETTSCEEEEETTTCSE
T ss_pred CEEEEEECCC---CcEEEEEcCCCCCEEEEEEcCCCC-------------EEEEEeCCCeEEEEECCCCcE
Confidence 9999999988 567888899999999999999998 899999999999999987653
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-33 Score=263.16 Aligned_cols=249 Identities=14% Similarity=0.088 Sum_probs=207.5
Q ss_pred cccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccC
Q 012007 157 FKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYD 236 (473)
Q Consensus 157 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (473)
+..|.++|.+++|+|++++|++|+.||.|++||+.+++...... ..+|..
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~------------------------------~~~h~~ 53 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHE------------------------------LKEHNG 53 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEE------------------------------EECCSS
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeee------------------------------ecCCCC
Confidence 45589999999999999999999999999999998775211111 114899
Q ss_pred CeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEe--ecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcc
Q 012007 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI--NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTK 313 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~--~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~ 313 (473)
.|.+++|+|++++|++++.|+.|++||+.+++....+ ..|...|.++.|++++ +|++++.||.|++||++... ..
T Consensus 54 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~--~~ 131 (372)
T 1k8k_C 54 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN--DW 131 (372)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTT--TE
T ss_pred cccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCC--cc
Confidence 9999999999999999999999999999988765443 5789999999999988 89999999999999997433 11
Q ss_pred eeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCC-----------------cccccceeecCcceEEEEEe-
Q 012007 314 HCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEK-----------------HLSHGGVLRGHKMAVLCLAA- 375 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~-----------------~~~~~~~~~~~~~~v~~~~~- 375 (473)
.........|...|.+++|+|++++|++++.||.|++||++. .......+.+|...+.++.+
T Consensus 132 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 211 (372)
T 1k8k_C 132 WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS 211 (372)
T ss_dssp EEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC
T ss_pred eeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEEC
Confidence 223344467899999999999999999999999999999641 12233445578888877665
Q ss_pred -cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 376 -AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 376 -~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
++++|++++.|+.|++||+.+ ..++..+..|..+|.+++|+|++. +|++| .|+.|++|++..
T Consensus 212 ~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~-------------~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 212 ANGSRVAWVSHDSTVCLADADK---KMAVATLASETLPLLAVTFITESS-------------LVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp SSSSEEEEEETTTEEEEEEGGG---TTEEEEEECSSCCEEEEEEEETTE-------------EEEEE-TTSSCEEEEEET
T ss_pred CCCCEEEEEeCCCEEEEEECCC---CceeEEEccCCCCeEEEEEecCCC-------------EEEEE-eCCeEEEEEccC
Confidence 688999999999999999988 467888889999999999999987 67766 899999999987
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=265.90 Aligned_cols=256 Identities=13% Similarity=0.200 Sum_probs=212.1
Q ss_pred ccccCcccEEEEEEeCC----CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeE
Q 012007 156 GFKSNSGLVKAIIISGD----SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231 (473)
Q Consensus 156 ~~~~h~~~V~~l~~s~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (473)
...+|.+.|.+++|+|+ ...+++++.++.|++||+.+++..........
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~--------------------------- 65 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVD--------------------------- 65 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEEC---------------------------
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccc---------------------------
Confidence 34579999999999984 45677777788999999987654433221100
Q ss_pred eeccCCeeEEEEcCC----CCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcC-CC-EEEEEeCCCcEEEEeC
Q 012007 232 IRHYDAVSCLSLNAE----QGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGF-DS-LVFTGSADGTVKVWRR 305 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~----~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~dg~i~vwd~ 305 (473)
..|...|.+++|+|+ +.+|++|+.||.|++||+.+++.+..+..|...|.+++|+| ++ +|++++.||.|++||+
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~ 145 (366)
T 3k26_A 66 ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 145 (366)
T ss_dssp SCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred cCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence 027788999999998 67999999999999999999999999999999999999999 65 8999999999999999
Q ss_pred cccCCCcceeeeeee---ccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccc----------------------
Q 012007 306 ELQGKGTKHCLAQVL---LKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHG---------------------- 360 (473)
Q Consensus 306 ~~~~~~~~~~~~~~~---~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---------------------- 360 (473)
+... ....+ ..|...|.+++|+|++.+|++++.||.|++||+++.....
T Consensus 146 ~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (366)
T 3k26_A 146 QTDT------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI 219 (366)
T ss_dssp TTTE------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred ecCe------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence 7322 22333 6899999999999999999999999999999998643221
Q ss_pred -----ceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCc-----------eeEEEEecCCCCceeEEEEecC--C
Q 012007 361 -----GVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGA-----------HSCLAVLTGHTGPVKCLAVEED--R 422 (473)
Q Consensus 361 -----~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~~~~~h~~~V~~l~~~~~--~ 422 (473)
....+|...+.++.+++++|++++.|+.|++||+.+... ...+..+.+|...|++++|+|+ +
T Consensus 220 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 299 (366)
T 3k26_A 220 HFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ 299 (366)
T ss_dssp CCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS
T ss_pred ccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC
Confidence 112238888999999999999999999999999986421 2567888899999999999999 7
Q ss_pred CCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 423 DHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 423 ~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
. +|++|+.||.|++||+..+++
T Consensus 300 ~-------------~l~~~~~dg~i~vwd~~~~~~ 321 (366)
T 3k26_A 300 K-------------MLALGNQVGKLYVWDLEVEDP 321 (366)
T ss_dssp S-------------EEEEECTTSCEEEEECCSSSG
T ss_pred c-------------EEEEEecCCcEEEEECCCCCC
Confidence 7 899999999999999998754
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=272.04 Aligned_cols=259 Identities=11% Similarity=0.050 Sum_probs=204.2
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecccccc
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTF 207 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 207 (473)
++++||+++|+++.|++|+ | .+....+.+|...|.+++|+|+| .++.+.+|+.+.... ..
T Consensus 22 ~~SpDG~~iASas~D~TV~--d-~~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~---~~------- 81 (588)
T 2j04_A 22 TWARDGTLYLTTFPDISIG--Q-PKYAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNGL---LN------- 81 (588)
T ss_dssp EECTTSCEEEECSSSEEEE--E-ECCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCS---ST-------
T ss_pred EECCCCCEEEEEcCCceee--c-ccccceecCCCccEEEEEECCCC-------CcceEEEEeCCCceE---ee-------
Confidence 4556799999999999999 6 44445668999999999999998 566655555432221 11
Q ss_pred ceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCC-----ceeE
Q 012007 208 KDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDD-----AINS 282 (473)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~-----~v~~ 282 (473)
..|...|.+++|+|+|.+|++++.||.|++||... ++..+. |.. .+.+
T Consensus 82 ------------------------~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~s 134 (588)
T 2j04_A 82 ------------------------SQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHC 134 (588)
T ss_dssp ------------------------TSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEE
T ss_pred ------------------------cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEE
Confidence 12678899999999999999999999999999544 666666 665 4999
Q ss_pred EEEcCCC-EEEEEeCCCcEEEEeCcccCCCcc-eeeeeee----ccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCc
Q 012007 283 VVAGFDS-LVFTGSADGTVKVWRRELQGKGTK-HCLAQVL----LKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH 356 (473)
Q Consensus 283 l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~----~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~ 356 (473)
++|+|++ +|++|+.||+|++||+..+..... ......+ .+|...|.+++|+|+| +++++.|+.|++||+...
T Consensus 135 vafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~ 212 (588)
T 2j04_A 135 FEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSAS 212 (588)
T ss_dssp EEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSS
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCC
Confidence 9999999 999999999999999975321000 0122333 6788999999999999 778888999999999875
Q ss_pred ccc--ccee-ecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEE--ecCCCCCcccccC
Q 012007 357 LSH--GGVL-RGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAV--EEDRDHDHEYHQK 431 (473)
Q Consensus 357 ~~~--~~~~-~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~--~~~~~~~~~~~~~ 431 (473)
... ...+ .+|...|.++++.|+.|++++ +++|++||+.+ ........+|...|..++| +|++.
T Consensus 213 ~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~---~~~~~~~~gh~~~V~~va~~~s~d~~-------- 280 (588)
T 2j04_A 213 SHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKN---YSISSLKTGSLENFHIIPLNHEKEST-------- 280 (588)
T ss_dssp SSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTT---TEEEEEECSCCSCCCEEEETTCSSCE--------
T ss_pred ccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCC---CeEEEEEcCCCceEEEEEeeeCCCCC--------
Confidence 532 1234 478888888777789999998 69999999987 3442333389999999999 99987
Q ss_pred CCccEEEEEeeCCCcEEEEEcC
Q 012007 432 GDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 432 ~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
.|++++.||+ ++|.+.
T Consensus 281 -----~La~a~edG~-klw~~d 296 (588)
T 2j04_A 281 -----ILLMSNKTSY-KVLLED 296 (588)
T ss_dssp -----EEEECSSCEE-EEEESS
T ss_pred -----EEEEEcCCCC-EEEeec
Confidence 8999999999 999986
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=274.61 Aligned_cols=250 Identities=11% Similarity=0.081 Sum_probs=194.8
Q ss_pred cccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccC
Q 012007 157 FKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYD 236 (473)
Q Consensus 157 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (473)
+..+.+.|.+++|+|++++|++|+.||.|++||+.++....... +.+|..
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~------------------------------~~~h~~ 56 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHART------------------------------FSDHDK 56 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCC------------------------------BCCCSS
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEE------------------------------EecCCc
Confidence 34467899999999999999999999999999998763111111 114999
Q ss_pred CeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe---eeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCc
Q 012007 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK---CLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~---~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~ 312 (473)
.|.+++|+|++++|++++.|+.|++||+.+++ ....+..|...|.+++|+|++ +|++++.|+.|++||++...
T Consensus 57 ~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--- 133 (377)
T 3dwl_C 57 IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEN--- 133 (377)
T ss_dssp CEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-------
T ss_pred eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcc---
Confidence 99999999999999999999999999999877 677778899999999999987 89999999999999997432
Q ss_pred ceeeeeeecc-CCccEEEEEEccCCCEEEEeCCCCcEEEEecCCc-----------------ccccceeecCcceEEEEE
Q 012007 313 KHCLAQVLLK-HENAVTALAVNQESAVVYCGSSDGLVNFWECEKH-----------------LSHGGVLRGHKMAVLCLA 374 (473)
Q Consensus 313 ~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-----------------~~~~~~~~~~~~~v~~~~ 374 (473)
.......+.. |...|++++|+|++++|++++.|+.|++||++.. ......+ +|...+.++.
T Consensus 134 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~ 212 (377)
T 3dwl_C 134 DWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVG 212 (377)
T ss_dssp -CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEE
T ss_pred cceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEE
Confidence 1112344555 9999999999999999999999999999998521 1122223 7888887765
Q ss_pred --ecCCEEEEEeCCCcEEEEecCCCCc-eeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 375 --AAGNLVFSGSADRNICLWRREESGA-HSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 375 --~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
+++++|++++.||.|++||+.++.. ...+..+.+|...|.+++|+|++. +|++|+.|+.+ +|+
T Consensus 213 ~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------------~l~~~~~~~~~-~~~ 278 (377)
T 3dwl_C 213 FSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESA-------------IVAAGYNYSPI-LLQ 278 (377)
T ss_dssp ECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTE-------------EEEEESSSSEE-EEC
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCC-------------EEEEEcCCcEE-EEE
Confidence 5689999999999999999998432 123677889999999999999998 88888776655 776
Q ss_pred cCC
Q 012007 452 VSE 454 (473)
Q Consensus 452 i~~ 454 (473)
...
T Consensus 279 ~~~ 281 (377)
T 3dwl_C 279 GNE 281 (377)
T ss_dssp CCC
T ss_pred eCC
Confidence 653
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-32 Score=256.31 Aligned_cols=254 Identities=11% Similarity=0.184 Sum_probs=215.0
Q ss_pred cccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeec
Q 012007 155 SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRH 234 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
..+.+|.+.|++++|+|++++|++|+.||.|++||+.+++...... +|
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------------------------------~h 73 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD--------------------------------GH 73 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEEC--------------------------------CC
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhh--------------------------------hc
Confidence 3578899999999999999999999999999999998876543322 48
Q ss_pred cCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCC-----CcEEEEeCccc
Q 012007 235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSAD-----GTVKVWRRELQ 308 (473)
Q Consensus 235 ~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~d-----g~i~vwd~~~~ 308 (473)
...|.+++|+|++++|++++.||.|++||+.+++.+..+. +...+.++.|++++ .+++++.+ |.|++||++..
T Consensus 74 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~ 152 (369)
T 3zwl_B 74 TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERD 152 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEEC
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCC
Confidence 9999999999999999999999999999999999999888 88899999999998 88888888 99999999754
Q ss_pred CCCcce-----eeeeeeccCCc--cEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe--cCCE
Q 012007 309 GKGTKH-----CLAQVLLKHEN--AVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNL 379 (473)
Q Consensus 309 ~~~~~~-----~~~~~~~~~~~--~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~ 379 (473)
...... .....+..|.. .+.+++|+|++++|++++.||.|++||+++.......+..|...+.++.+ ++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (369)
T 3zwl_B 153 SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTY 232 (369)
T ss_dssp TTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred ccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCE
Confidence 321111 12233445555 89999999999999999999999999999855555677788888877665 6999
Q ss_pred EEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCC--------------
Q 012007 380 VFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDK-------------- 445 (473)
Q Consensus 380 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg-------------- 445 (473)
|++++.|+.|++||+.+ ...+..+. +...+.+++|+|++. ++++++.++
T Consensus 233 l~~~~~d~~i~v~d~~~---~~~~~~~~-~~~~~~~~~~~~~~~-------------~l~~~~~~~~~~~~~~~~~~~~~ 295 (369)
T 3zwl_B 233 FITSSRDTNSFLVDVST---LQVLKKYE-TDCPLNTAVITPLKE-------------FIILGGGQEAKDVTTTSANEGKF 295 (369)
T ss_dssp EEEEETTSEEEEEETTT---CCEEEEEE-CSSCEEEEEECSSSS-------------EEEEEECCC-------------C
T ss_pred EEEecCCceEEEEECCC---Cceeeeec-CCCCceeEEecCCCc-------------eEEEeecCCCceEEEEecCCCcc
Confidence 99999999999999998 45555555 678899999999998 899998888
Q ss_pred cEEEEEcCCCCCC
Q 012007 446 SVKVWRVSEHAPD 458 (473)
Q Consensus 446 ~v~iW~i~~~~~~ 458 (473)
.|++|++..++..
T Consensus 296 ~i~~~d~~~~~~~ 308 (369)
T 3zwl_B 296 EARFYHKIFEEEI 308 (369)
T ss_dssp EEEEEETTTCCEE
T ss_pred eeEEEecCCCcch
Confidence 8999999877544
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=282.51 Aligned_cols=252 Identities=21% Similarity=0.371 Sum_probs=207.5
Q ss_pred ccccCcccEEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeec
Q 012007 156 GFKSNSGLVKAIIISGDS-NKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRH 234 (473)
Q Consensus 156 ~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
.+++|.+.|++|+|++++ ++|++|+.||+|++|++.......... .....+|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~---------------------------~~~~~~h 429 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVA---------------------------QRRLTGH 429 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEE---------------------------EEEEECC
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccc---------------------------cceecCC
Confidence 467899999999999875 799999999999999997653211000 0122359
Q ss_pred cCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcc
Q 012007 235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTK 313 (473)
Q Consensus 235 ~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~ 313 (473)
...|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|++++ +|++++.|+.|++||.... ..
T Consensus 430 ~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~---~~ 506 (694)
T 3dm0_A 430 SHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE---CK 506 (694)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC---EE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC---cc
Confidence 9999999999999999999999999999999999999999999999999999998 8999999999999997521 11
Q ss_pred eeeeeeeccCCccEEEEEEccCC--CEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcE
Q 012007 314 HCLAQVLLKHENAVTALAVNQES--AVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNI 389 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i 389 (473)
........+|...|.+++|+|++ .+|++++.|+.|++||+++.. ....+.+|...|.+++ +++++|++|+.||.|
T Consensus 507 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~-~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i 585 (694)
T 3dm0_A 507 YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK-LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVV 585 (694)
T ss_dssp EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSBC
T ss_pred eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc-EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeE
Confidence 22223345788999999999986 689999999999999998754 3456778998887766 469999999999999
Q ss_pred EEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 390 CLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 390 ~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
++||+.+ .+++..+.. ...|.+++|+|++. +|+++ .|+.|+|||+..+.
T Consensus 586 ~iwd~~~---~~~~~~~~~-~~~v~~~~~sp~~~-------------~l~~~-~~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 586 LLWDLAE---GKKLYSLEA-NSVIHALCFSPNRY-------------WLCAA-TEHGIKIWDLESKS 634 (694)
T ss_dssp EEEETTT---TEEEECCBC-SSCEEEEEECSSSS-------------EEEEE-ETTEEEEEETTTTE
T ss_pred EEEECCC---CceEEEecC-CCcEEEEEEcCCCc-------------EEEEE-cCCCEEEEECCCCC
Confidence 9999998 456666654 46799999999987 55555 56779999998764
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=263.39 Aligned_cols=257 Identities=14% Similarity=0.196 Sum_probs=208.3
Q ss_pred ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee
Q 012007 154 FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233 (473)
Q Consensus 154 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (473)
...+.+|.+.|++++|+| ++|++|+.||.|++||+.+.+..... .......+
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~--------------------------~~~~~~~~ 60 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPK--------------------------DKSYSHFV 60 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGG--------------------------GGEEEEEC
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCC--------------------------CcceEEec
Confidence 446788999999999998 69999999999999999877611000 00011224
Q ss_pred ccCCeeEEEEcCC----C---CEEEEEeCCCCEEEEEcCCCee-----eEEeecC-----CCceeEEEEc----CCC-E-
Q 012007 234 HYDAVSCLSLNAE----Q---GLLYSGSWDKTLKVWRISDCKC-----LESINAH-----DDAINSVVAG----FDS-L- 290 (473)
Q Consensus 234 ~~~~v~~l~~~~~----~---~~l~s~s~dg~v~vwd~~~~~~-----~~~~~~~-----~~~v~~l~~~----~~~-~- 290 (473)
|...|.+++|+|+ + .+|++++.|+.|++||+.+++. +..+..| ...|.+++|+ +++ .
T Consensus 61 h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 140 (397)
T 1sq9_A 61 HKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHR 140 (397)
T ss_dssp CTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEE
T ss_pred CCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceE
Confidence 9999999999999 9 9999999999999999998887 8888888 5899999999 877 7
Q ss_pred EEEEeCCCcEEEEeCcc------cCCCcceeeeeee-------ccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcc
Q 012007 291 VFTGSADGTVKVWRREL------QGKGTKHCLAQVL-------LKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHL 357 (473)
Q Consensus 291 l~s~~~dg~i~vwd~~~------~~~~~~~~~~~~~-------~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~ 357 (473)
|++++.||.|++||++. ..... ......+ ..|...|.+++|+|++ +|++++.||.|++||+++..
T Consensus 141 l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~ 218 (397)
T 1sq9_A 141 LVATDVKGTTYIWKFHPFADESNSLTLN-WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR 218 (397)
T ss_dssp EEEEETTSCEEEEEEESSSSHHHHTTTC-CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE
T ss_pred EEEEeCCCcEEEEeCCccccccccceee-ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc
Confidence 99999999999999985 32211 1111133 4588999999999999 99999999999999998754
Q ss_pred cccceeec---C---cceEEEEEe--cCCEEEEEeCC---CcEEEEecCCCCceeEEEEecC-------------CCCce
Q 012007 358 SHGGVLRG---H---KMAVLCLAA--AGNLVFSGSAD---RNICLWRREESGAHSCLAVLTG-------------HTGPV 413 (473)
Q Consensus 358 ~~~~~~~~---~---~~~v~~~~~--~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~-------------h~~~V 413 (473)
.. ..+.. | ...+.++.+ ++++|++++.| +.|++||+.+ .+++..+.+ |...|
T Consensus 219 ~~-~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v 294 (397)
T 1sq9_A 219 PL-YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF---GERIGSLSVPTHSSQASLGEFAHSSWV 294 (397)
T ss_dssp EE-EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT---CCEEEEECBC--------CCBSBSSCE
T ss_pred ee-EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC---CcccceeccCcccccccccccccCCcE
Confidence 33 45556 7 777776664 69999999999 9999999988 467777887 99999
Q ss_pred eEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 414 KCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
.+++|+|++. +|++++.||.|++||+..++.
T Consensus 295 ~~~~~~~~~~-------------~l~~~~~dg~i~iwd~~~~~~ 325 (397)
T 1sq9_A 295 MSLSFNDSGE-------------TLCSAGWDGKLRFWDVKTKER 325 (397)
T ss_dssp EEEEECSSSS-------------EEEEEETTSEEEEEETTTTEE
T ss_pred EEEEECCCCC-------------EEEEEeCCCeEEEEEcCCCce
Confidence 9999999998 899999999999999987654
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-32 Score=251.19 Aligned_cols=244 Identities=23% Similarity=0.325 Sum_probs=205.0
Q ss_pred ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeE
Q 012007 152 KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231 (473)
Q Consensus 152 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (473)
+....+.+|.+.|.+++| +++++|++|+.||.|++||+.+........
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~------------------------------- 56 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVY------------------------------- 56 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEE-------------------------------
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEee-------------------------------
Confidence 456678899999999999 899999999999999999997765433222
Q ss_pred eeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC---eeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCccc
Q 012007 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC---KCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQ 308 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~---~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~ 308 (473)
.|...|.+++|+|++++|++++.|+.|++|++... +.+..+..|...|.++.+ .++.+++++.||.|++||..
T Consensus 57 -~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~~d~~i~~~d~~-- 132 (313)
T 3odt_A 57 -TGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF-QDGVVISGSWDKTAKVWKEG-- 132 (313)
T ss_dssp -ECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETT--
T ss_pred -cCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe-cCCEEEEEeCCCCEEEEcCC--
Confidence 38899999999999999999999999999998654 667788899999999999 45599999999999999932
Q ss_pred CCCcceeeeeeeccCCccEEEEEEcc-CCCEEEEeCCCCcEEEEecCCcccccceeec-CcceEEEEE--ecCCEEEEEe
Q 012007 309 GKGTKHCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKHLSHGGVLRG-HKMAVLCLA--AAGNLVFSGS 384 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~--~~~~~l~s~~ 384 (473)
.....+..|...+.+++|.| ++.++++++.||.|++||.... . ..+.. |...+.++. +++. +++++
T Consensus 133 ------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~-~~~~~~~~~~i~~~~~~~~~~-~~~~~ 202 (313)
T 3odt_A 133 ------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV--I-KTFSGIHNDVVRHLAVVDDGH-FISCS 202 (313)
T ss_dssp ------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE--E-EEECSSCSSCEEEEEEEETTE-EEEEE
T ss_pred ------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCce--E-EEEeccCcccEEEEEEcCCCe-EEEcc
Confidence 23456678999999999998 8999999999999999995432 2 23333 777776655 4566 99999
Q ss_pred CCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 385 ADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 385 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
.||.|++||+.+ .+++..+.+|...|++++|+|++. |++++.||.|++||+.+++..
T Consensus 203 ~dg~i~i~d~~~---~~~~~~~~~~~~~i~~~~~~~~~~--------------l~~~~~dg~v~iwd~~~~~~~ 259 (313)
T 3odt_A 203 NDGLIKLVDMHT---GDVLRTYEGHESFVYCIKLLPNGD--------------IVSCGEDRTVRIWSKENGSLK 259 (313)
T ss_dssp TTSEEEEEETTT---CCEEEEEECCSSCEEEEEECTTSC--------------EEEEETTSEEEEECTTTCCEE
T ss_pred CCCeEEEEECCc---hhhhhhhhcCCceEEEEEEecCCC--------------EEEEecCCEEEEEECCCCcee
Confidence 999999999998 577888889999999999999984 889999999999999887543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=261.03 Aligned_cols=253 Identities=18% Similarity=0.240 Sum_probs=202.2
Q ss_pred ccccCcccEEEEEEeCCCCEEE-EEeC---CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeE
Q 012007 156 GFKSNSGLVKAIIISGDSNKIF-TGHQ---DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231 (473)
Q Consensus 156 ~~~~h~~~V~~l~~s~~~~~l~-s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (473)
.+.+|...|.+++|+|++..++ +|+. ||.|++||+.+++......
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~------------------------------- 61 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLRE------------------------------- 61 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEE-------------------------------
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceee-------------------------------
Confidence 4567999999999999996555 5555 8999999998876543322
Q ss_pred eeccCCeeEEEEcCC---CCEEEEEeCCCCEEEEEcCCCe-eeEEeecCCCceeEEEE------cCCC-EEEEEeCCCcE
Q 012007 232 IRHYDAVSCLSLNAE---QGLLYSGSWDKTLKVWRISDCK-CLESINAHDDAINSVVA------GFDS-LVFTGSADGTV 300 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~---~~~l~s~s~dg~v~vwd~~~~~-~~~~~~~~~~~v~~l~~------~~~~-~l~s~~~dg~i 300 (473)
.+|...|.+++|+|+ +.+|++|+.||.|++||+.+++ .+..+..|...|.++.| ++++ +|++++.||.|
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i 141 (357)
T 3i2n_A 62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141 (357)
T ss_dssp EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence 248999999999998 6999999999999999999988 88899999999999965 4565 89999999999
Q ss_pred EEEeCcccCCCcceeeeeeeccC----CccEEEEE----EccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEE
Q 012007 301 KVWRRELQGKGTKHCLAQVLLKH----ENAVTALA----VNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLC 372 (473)
Q Consensus 301 ~vwd~~~~~~~~~~~~~~~~~~~----~~~v~~l~----~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 372 (473)
++||++... .....+..| ...+.+++ |+|++.+|++++.||.|++||+++.... ....|...+.+
T Consensus 142 ~vwd~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~v~~ 214 (357)
T 3i2n_A 142 KVWDPRQKD-----DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR--WETNIKNGVCS 214 (357)
T ss_dssp EEECTTSCS-----SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEE--EEEECSSCEEE
T ss_pred EEEeCCCCC-----CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCcee--eecCCCCceEE
Confidence 999997433 123333333 33789998 7889999999999999999999886543 34567777777
Q ss_pred EEe-----cCCEEEEEeCCCcEEEEecCCCCceeE--EEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCC
Q 012007 373 LAA-----AGNLVFSGSADRNICLWRREESGAHSC--LAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDK 445 (473)
Q Consensus 373 ~~~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg 445 (473)
+.+ ++.+|++|+.||.|++||+.+...... ...+.+|...|++++|+|++.. +|++++.||
T Consensus 215 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------------~l~~~~~dg 282 (357)
T 3i2n_A 215 LEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRE------------LFLTAGGAG 282 (357)
T ss_dssp EEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEE------------EEEEEETTS
T ss_pred EEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCc------------EEEEEeCCC
Confidence 665 679999999999999999987322222 2244589999999999998763 799999999
Q ss_pred cEEEEEcCCCCCC
Q 012007 446 SVKVWRVSEHAPD 458 (473)
Q Consensus 446 ~v~iW~i~~~~~~ 458 (473)
.|++|++..+...
T Consensus 283 ~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 283 GLHLWKYEYPIQR 295 (357)
T ss_dssp EEEEEEEECCSCC
T ss_pred cEEEeecCCCccc
Confidence 9999999876543
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-32 Score=258.23 Aligned_cols=243 Identities=14% Similarity=0.128 Sum_probs=193.6
Q ss_pred eeeeecccEEEEEecCCEEEEee-----------CCCcEEEeeCCcc-----------ccccccCcccEEEEEEeCCCCE
Q 012007 118 SIVRKEGHIYSLAASGDLLYTGS-----------DSKNIRVWKNLKE-----------FSGFKSNSGLVKAIIISGDSNK 175 (473)
Q Consensus 118 ~l~~h~~~V~~~~~~g~~l~tg~-----------~dg~i~vwd~~~~-----------~~~~~~h~~~V~~l~~s~~~~~ 175 (473)
.|.+|+..|.+++++++.+++|. .|+.+|+|+.... ......+...+.+++|+|||++
T Consensus 68 ~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~ 147 (365)
T 4h5i_A 68 ALEDNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTV 147 (365)
T ss_dssp ECCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSC
T ss_pred EccCCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCE
Confidence 46678889999999999988874 4678999974311 1112334567999999999999
Q ss_pred EEEEe--CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE
Q 012007 176 IFTGH--QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG 253 (473)
Q Consensus 176 l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~ 253 (473)
|++++ .|++|+|||+.+++..... .|...|.+++|+|+|++|+++
T Consensus 148 la~as~~~d~~i~iwd~~~~~~~~~~---------------------------------~~~~~V~~v~fspdg~~l~s~ 194 (365)
T 4h5i_A 148 AAIASSKVPAIMRIIDPSDLTEKFEI---------------------------------ETRGEVKDLHFSTDGKVVAYI 194 (365)
T ss_dssp EEEEESCSSCEEEEEETTTTEEEEEE---------------------------------ECSSCCCEEEECTTSSEEEEE
T ss_pred EEEEECCCCCEEEEeECCCCcEEEEe---------------------------------CCCCceEEEEEccCCceEEec
Confidence 87654 6899999999987654333 378889999999999999999
Q ss_pred eCCCCEEEEEcCCCeeeEE--eecCCCceeEEEEcCCC-EEEEEeCCC----cEEEEeCcccCCCcceeeeeeeccCCcc
Q 012007 254 SWDKTLKVWRISDCKCLES--INAHDDAINSVVAGFDS-LVFTGSADG----TVKVWRRELQGKGTKHCLAQVLLKHENA 326 (473)
Q Consensus 254 s~dg~v~vwd~~~~~~~~~--~~~~~~~v~~l~~~~~~-~l~s~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
+. +.+++|+..+++.+.. ...|...|.+++|+|++ .+++++.|+ .+++|++.... ........+..|...
T Consensus 195 s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~ 271 (365)
T 4h5i_A 195 TG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGN--TSVLRSKQVTNRFKG 271 (365)
T ss_dssp CS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTE--EEEEEEEEEESSCSC
T ss_pred cc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccce--ecceeeeeecCCCCC
Confidence 85 5677888777766543 45688899999999998 788888777 57888875322 122234567789999
Q ss_pred EEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCC
Q 012007 327 VTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 327 v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
|++++|+|+|++||+|+.|+.|+|||++++......+.+|...|.+++ |||++|++|+.|++|+||++..
T Consensus 272 V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 272 ITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred eEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 999999999999999999999999999987766666789999987765 5799999999999999999964
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-32 Score=264.95 Aligned_cols=257 Identities=14% Similarity=0.214 Sum_probs=195.8
Q ss_pred ccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeecc--
Q 012007 158 KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY-- 235 (473)
Q Consensus 158 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 235 (473)
..|.+.|.+++|+|+|++|++|+.||.|+|||+.+........... ........+|.
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~---------------------~~~~~~~~~h~~~ 83 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGE---------------------YNVYSTFQSHEPE 83 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCC---------------------EEEEEEEECCCCE
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccc---------------------eeEeccccccccc
Confidence 3467899999999999999999999999999998765210000000 00001122365
Q ss_pred ----------CCeeEEEEcCCC--CEEEEEeCCCCEEEEEcCCCeee---------------------------------
Q 012007 236 ----------DAVSCLSLNAEQ--GLLYSGSWDKTLKVWRISDCKCL--------------------------------- 270 (473)
Q Consensus 236 ----------~~v~~l~~~~~~--~~l~s~s~dg~v~vwd~~~~~~~--------------------------------- 270 (473)
..|.+++|+|++ .+|++++.|++|++||+.+++..
T Consensus 84 ~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 163 (447)
T 3dw8_B 84 FDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLM 163 (447)
T ss_dssp EEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEE
T ss_pred ccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchhee
Confidence 889999999998 79999999999999999765432
Q ss_pred ------EE-eecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeee-------eeccCCccEEEEEEccC
Q 012007 271 ------ES-INAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQ-------VLLKHENAVTALAVNQE 335 (473)
Q Consensus 271 ------~~-~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~v~~l~~~~~ 335 (473)
.. ..+|...|.+++|+|++ +|++| .|+.|++||++... .... .+..|...|++++|+|+
T Consensus 164 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 237 (447)
T 3dw8_B 164 VEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITD-----RSFNIVDIKPANMEELTEVITAAEFHPN 237 (447)
T ss_dssp EEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEE-----EEEEEEECCCSSGGGCCCCEEEEEECSS
T ss_pred eeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCC-----ceeeeeecccccccccCcceEEEEECCC
Confidence 12 35799999999999998 77777 89999999997321 1111 36689999999999999
Q ss_pred C-CEEEEeCCCCcEEEEecCCcccc---cceeecCcc------------eEEEEE--ecCCEEEEEeCCCcEEEEecCCC
Q 012007 336 S-AVVYCGSSDGLVNFWECEKHLSH---GGVLRGHKM------------AVLCLA--AAGNLVFSGSADRNICLWRREES 397 (473)
Q Consensus 336 ~-~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~------------~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~ 397 (473)
+ .+|++++.||.|++||+++.... ...+.+|.. .+.++. +++++|++++. +.|++||+...
T Consensus 238 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~ 316 (447)
T 3dw8_B 238 SCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNME 316 (447)
T ss_dssp CTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCC
T ss_pred CCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCC
Confidence 8 99999999999999999876541 355666654 666655 56999999998 99999999862
Q ss_pred CceeEEEEecCCCCc---------------eeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 398 GAHSCLAVLTGHTGP---------------VKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 398 ~~~~~~~~~~~h~~~---------------V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
..++..+.+|... +..++|+|++. +|++|+.||.|++||+..++.
T Consensus 317 --~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~-------------~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 317 --NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS-------------VVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp --SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS-------------EEEEECSTTEEEEEETTTCCE
T ss_pred --ccccceeeccccccccccccccccccccceEEEECCCCC-------------EEEEeccCCEEEEEEcCCCcc
Confidence 3456666777542 23499999998 899999999999999987653
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-32 Score=256.03 Aligned_cols=257 Identities=14% Similarity=0.171 Sum_probs=204.2
Q ss_pred ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeecc
Q 012007 156 GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY 235 (473)
Q Consensus 156 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (473)
...+|.+.|.+++|+|++++|++++.||.|++|++..+...... ....+|.
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~-----------------------------~~~~~~~ 56 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL-----------------------------LQSLRYK 56 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEE-----------------------------EEEEECS
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccc-----------------------------eeeeecC
Confidence 34579999999999999999999999999999999876521111 1112499
Q ss_pred CCeeEEEEcCCCC-EEEEEeCCCCEEEEEc-CCCeeeEEeec--CCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCC
Q 012007 236 DAVSCLSLNAEQG-LLYSGSWDKTLKVWRI-SDCKCLESINA--HDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 236 ~~v~~l~~~~~~~-~l~s~s~dg~v~vwd~-~~~~~~~~~~~--~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
..|.+++|+|+++ +|++|+.||.|++||+ .+++. ..+.. |...|.+++|++...+++++.|+.|++||++.....
T Consensus 57 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 135 (342)
T 1yfq_A 57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG 135 (342)
T ss_dssp SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTB
T ss_pred CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccc
Confidence 9999999999999 9999999999999999 77755 67778 999999999999559999999999999998741100
Q ss_pred cc---eeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCC-ccc-ccceeecCcceEEEEE--e-cCCEEEEE
Q 012007 312 TK---HCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEK-HLS-HGGVLRGHKMAVLCLA--A-AGNLVFSG 383 (473)
Q Consensus 312 ~~---~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~-~~~-~~~~~~~~~~~v~~~~--~-~~~~l~s~ 383 (473)
.. ......+. |...|.+++|++++ +++++.|+.|++||+++ ... .......|...+.++. + ++++|+++
T Consensus 136 ~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~ 212 (342)
T 1yfq_A 136 VIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS 212 (342)
T ss_dssp CEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEE
T ss_pred cccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEE
Confidence 00 11222333 88999999999987 88999999999999987 443 2234445666676655 5 78999999
Q ss_pred eCCCcEEEEecCCCC---ceeEEEEecCCCC---------ceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 384 SADRNICLWRREESG---AHSCLAVLTGHTG---------PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 384 ~~dg~i~iwd~~~~~---~~~~~~~~~~h~~---------~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
+.||.|++|+++..+ .......+.+|.. .|++++|+|++. +|++++.||.|++||
T Consensus 213 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-------------~l~~~~~dg~i~vwd 279 (342)
T 1yfq_A 213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-------------FLYTAGSDGIISCWN 279 (342)
T ss_dssp ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-------------CEEEEETTSCEEEEE
T ss_pred ecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCC-------------EEEEecCCceEEEEc
Confidence 999999999998741 0144556666654 999999999998 899999999999999
Q ss_pred cCCCCCC
Q 012007 452 VSEHAPD 458 (473)
Q Consensus 452 i~~~~~~ 458 (473)
+.+++..
T Consensus 280 ~~~~~~~ 286 (342)
T 1yfq_A 280 LQTRKKI 286 (342)
T ss_dssp TTTTEEE
T ss_pred CccHhHh
Confidence 9877643
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=285.78 Aligned_cols=254 Identities=19% Similarity=0.241 Sum_probs=209.0
Q ss_pred cccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeec
Q 012007 155 SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRH 234 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
..+.+|.+.|++++|+|++++|++|+.||.|++||+.......... ..+|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~------------------------------l~~h 52 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDT------------------------------LTGH 52 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEE------------------------------ECCC
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCcccee------------------------------ccCC
Confidence 4578899999999999999999999999999999987543222211 1249
Q ss_pred cCCeeEEEEcCC--CCEEEEEeCCCCEEEEEcCCCe--eeEEeecCCCceeEEEEcCC--C-EEEEEeCCCcEEEEeCcc
Q 012007 235 YDAVSCLSLNAE--QGLLYSGSWDKTLKVWRISDCK--CLESINAHDDAINSVVAGFD--S-LVFTGSADGTVKVWRREL 307 (473)
Q Consensus 235 ~~~v~~l~~~~~--~~~l~s~s~dg~v~vwd~~~~~--~~~~~~~~~~~v~~l~~~~~--~-~l~s~~~dg~i~vwd~~~ 307 (473)
...|.+++|+++ +++|++|+.||.|++||+.+++ .+..+..|...|.++.|+|+ + .+++|+.||.|++||++.
T Consensus 53 ~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~ 132 (753)
T 3jro_A 53 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE 132 (753)
T ss_dssp SSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCS
T ss_pred cCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeec
Confidence 999999999987 9999999999999999999987 77788899999999999997 5 999999999999999975
Q ss_pred cCCCcceeeeeeeccCCccEEEEEEcc-------------CCCEEEEeCCCCcEEEEecCCcc---cccceeecCcceEE
Q 012007 308 QGKGTKHCLAQVLLKHENAVTALAVNQ-------------ESAVVYCGSSDGLVNFWECEKHL---SHGGVLRGHKMAVL 371 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~~l~~~~-------------~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~ 371 (473)
... ........|...|.+++|+| ++.+|++|+.||.|++||+++.. .....+.+|...|.
T Consensus 133 ~~~----~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~ 208 (753)
T 3jro_A 133 NGT----TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR 208 (753)
T ss_dssp SSC----CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE
T ss_pred CCC----cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEE
Confidence 422 22345678999999999999 58999999999999999998653 33345678888887
Q ss_pred EEEe--c---CCEEEEEeCCCcEEEEecCCCCce--eEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCC
Q 012007 372 CLAA--A---GNLVFSGSADRNICLWRREESGAH--SCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLD 444 (473)
Q Consensus 372 ~~~~--~---~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~D 444 (473)
++.+ + +.+|++|+.||.|++||+.++... ..+.....|...|++++|+|++. +|++|+.|
T Consensus 209 ~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-------------~l~s~s~D 275 (753)
T 3jro_A 209 DVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-------------VLALSGGD 275 (753)
T ss_dssp EEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTC-------------CEEEECSS
T ss_pred EEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCC-------------EEEEEcCC
Confidence 7765 5 789999999999999999874211 13334456889999999999998 79999999
Q ss_pred CcEEEEEcCCC
Q 012007 445 KSVKVWRVSEH 455 (473)
Q Consensus 445 g~v~iW~i~~~ 455 (473)
|.|++|++...
T Consensus 276 g~I~vwd~~~~ 286 (753)
T 3jro_A 276 NKVTLWKENLE 286 (753)
T ss_dssp SCEECCBCCSS
T ss_pred CEEEEEecCCC
Confidence 99999999854
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-32 Score=256.21 Aligned_cols=292 Identities=12% Similarity=0.093 Sum_probs=209.9
Q ss_pred eeeeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEE-EEEeCCCeEEEEeCCC
Q 012007 116 IGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKI-FTGHQDGKIRIWKVSR 192 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l-~s~~~dg~i~vwd~~~ 192 (473)
+..+.+|.+.|.++++ +|++|++|+.|| ++||+..........+...+..+++.++++++ ++++.|+.|++||+.+
T Consensus 12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~ 90 (355)
T 3vu4_A 12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK 90 (355)
T ss_dssp -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence 3455778888888876 488999998775 78999764433333333458889999988887 5677889999999988
Q ss_pred CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC-eeeE
Q 012007 193 KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC-KCLE 271 (473)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~-~~~~ 271 (473)
++...... +...|.+++|+++. ++++. |+.|++||+.++ +.+.
T Consensus 91 ~~~~~~~~---------------------------------~~~~v~~v~~~~~~--~~~~~-~~~i~i~d~~~~~~~~~ 134 (355)
T 3vu4_A 91 KQDVSRIK---------------------------------VDAPVKDLFLSREF--IVVSY-GDVISVFKFGNPWKRIT 134 (355)
T ss_dssp TEEEEEEE---------------------------------CSSCEEEEEECSSE--EEEEE-TTEEEEEESSTTCCBSS
T ss_pred CcEEEEEE---------------------------------CCCceEEEEEcCCE--EEEEE-cCEEEEEECCCCceeeE
Confidence 86544332 66789999998753 44444 789999999988 7776
Q ss_pred EeecCCCceeEEEEcCCCEEEE--EeCCCcEEEEeCcccCCC---------cceee-eeeeccCCccEEEEEEccCCCEE
Q 012007 272 SINAHDDAINSVVAGFDSLVFT--GSADGTVKVWRRELQGKG---------TKHCL-AQVLLKHENAVTALAVNQESAVV 339 (473)
Q Consensus 272 ~~~~~~~~v~~l~~~~~~~l~s--~~~dg~i~vwd~~~~~~~---------~~~~~-~~~~~~~~~~v~~l~~~~~~~~l 339 (473)
.+.. ....+++++ ..++. |+.||.|++||++..... ....+ ...+.+|...|++++|+|++++|
T Consensus 135 ~~~~---~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l 210 (355)
T 3vu4_A 135 DDIR---FGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMV 210 (355)
T ss_dssp CCEE---EEEEEEEET-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEE
T ss_pred Eecc---CCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEE
Confidence 6654 334445556 55554 689999999999753210 00011 56778999999999999999999
Q ss_pred EEeCCCCc-EEEEecCCcccccceeec-CcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCCceeEEEEe---------
Q 012007 340 YCGSSDGL-VNFWECEKHLSHGGVLRG-HKMAVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVL--------- 406 (473)
Q Consensus 340 ~~~~~dg~-i~iwd~~~~~~~~~~~~~-~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------- 406 (473)
++++.|++ |++||++++........+ |...|.+++ +++++|++++.|++|++||+....... ...+
T Consensus 211 ~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~-~~~~~~~~~~~~~ 289 (355)
T 3vu4_A 211 ATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNK-RHALKGWINMKYF 289 (355)
T ss_dssp EEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCC-SEETTTTEECCCC
T ss_pred EEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcc-cccccceeecccc
Confidence 99999998 999999987655444335 888887766 569999999999999999997632111 1111
Q ss_pred ------------cCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccCC
Q 012007 407 ------------TGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGL 462 (473)
Q Consensus 407 ------------~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~ 462 (473)
..+......++|++++. +|++++.||.+++|++..+......+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~a~~~d~~-------------~l~~~~~dg~~~~~~~~~~~~~~~~~ 344 (355)
T 3vu4_A 290 QSEWSLCNFKLSVDKHVRGCKIAWISESS-------------LVVVWPHTRMIETFKVVFDDEMERWL 344 (355)
T ss_dssp CCSSCSEEEECCCCTTCCCCEEEESSSSE-------------EEEEETTTTEEEEEEEEEETTTTEEE
T ss_pred ccccceeEEEeccCCCCCceEEEEeCCCC-------------EEEEEeCCCeEEEEEEEcCCCCceEE
Confidence 11223347799999998 89999999999999998776544433
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-32 Score=256.02 Aligned_cols=272 Identities=8% Similarity=0.022 Sum_probs=199.2
Q ss_pred EecCCEEEEeeCCCcEEEeeCCcc--ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecccccc
Q 012007 130 AASGDLLYTGSDSKNIRVWKNLKE--FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTF 207 (473)
Q Consensus 130 ~~~g~~l~tg~~dg~i~vwd~~~~--~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 207 (473)
..++.+|++|+.||+|++||.... +..+. ...|.++.|+|+ +++++.|+.|++|+........ ....
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~--~~~~---- 113 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITIL--DSKT---- 113 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEE--ETTT----
T ss_pred cCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEe--ecCC----
Confidence 356889999999999999997533 33333 577888889888 9999999999999886421110 0000
Q ss_pred ceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC--CCCEEEEEeCCCCEEEEEcCCCeeeEEee-cCCCceeEEE
Q 012007 208 KDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA--EQGLLYSGSWDKTLKVWRISDCKCLESIN-AHDDAINSVV 284 (473)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~ 284 (473)
... ......+|.+.|.+++|+| ++++|++|+.||+|++||+++++.+.... .+...+.+++
T Consensus 114 ----------~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~ 177 (343)
T 3lrv_A 114 ----------NKV------LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGV 177 (343)
T ss_dssp ----------CCE------EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEE
T ss_pred ----------cce------eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEE
Confidence 000 0011124778899999999 99999999999999999999999877664 4556899999
Q ss_pred EcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeecc-CCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccce
Q 012007 285 AGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLK-HENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV 362 (473)
Q Consensus 285 ~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 362 (473)
|+|++ +|++|+.||.|++||++.... ....+.. |...|++++|+|++.+|++++ |+.|++||+++.......
T Consensus 178 ~~pdg~~lasg~~dg~i~iwd~~~~~~-----~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~ 251 (343)
T 3lrv_A 178 LHKDSLLLALYSPDGILDVYNLSSPDQ-----ASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAY 251 (343)
T ss_dssp ECTTSCEEEEECTTSCEEEEESSCTTS-----CCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSS
T ss_pred ECCCCCEEEEEcCCCEEEEEECCCCCC-----CccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceee
Confidence 99998 888999999999999985432 2134455 999999999999999999999 559999999876443211
Q ss_pred --eecCcce----EEEEEecCCEEEEEeC-CCcEEEEecCCCCceeEEEEecCCCCceeEEEEec---CCCCCcccccCC
Q 012007 363 --LRGHKMA----VLCLAAAGNLVFSGSA-DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEE---DRDHDHEYHQKG 432 (473)
Q Consensus 363 --~~~~~~~----v~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~---~~~~~~~~~~~~ 432 (473)
+..|... ..++++++++|++++. |+.|++|++...... ... .++..++|.+ +..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~--------- 315 (343)
T 3lrv_A 252 PTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN--WTK-----DEESALCLQSDTADFT--------- 315 (343)
T ss_dssp CCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS--EEE-----EEEEECCC----CCCC---------
T ss_pred cccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc--eEe-----cCceeEecCccccccc---------
Confidence 1112222 4667778999999998 999999999763221 111 5677888888 555
Q ss_pred CccEEEEEeeCCCcEEEEEcCC
Q 012007 433 DQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 433 ~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
.+++++.||.+.++-...
T Consensus 316 ----~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 316 ----DMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp ----EEEEEEETTEEEEEEECS
T ss_pred ----eeEEEecCCceEEEEecC
Confidence 688888899888876443
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=261.21 Aligned_cols=264 Identities=18% Similarity=0.252 Sum_probs=211.9
Q ss_pred cccccCcccEEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee
Q 012007 155 SGFKSNSGLVKAIIISGD-SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (473)
.....|.+.|++++|+|+ +.+|++++.||.|++|++.......... . .........+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~-~---------------------~~~~~~~~~~ 179 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPS-G---------------------ECQPDLRLRG 179 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTT-C---------------------CCCCSEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCcc-c---------------------cCCCcEEecC
Confidence 345679999999999997 6899999999999999997631110000 0 0001112235
Q ss_pred ccCCeeEEEEcCCCC-EEEEEeCCCCEEEEEcCCCee-------eEEeecCCCceeEEEEcCC-C-EEEEEeCCCcEEEE
Q 012007 234 HYDAVSCLSLNAEQG-LLYSGSWDKTLKVWRISDCKC-------LESINAHDDAINSVVAGFD-S-LVFTGSADGTVKVW 303 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~-~l~s~s~dg~v~vwd~~~~~~-------~~~~~~~~~~v~~l~~~~~-~-~l~s~~~dg~i~vw 303 (473)
|...|.+++|+|++. +|++|+.||.|++||+..+.. ...+..|...|.+++|+|+ + +|++++.||.|++|
T Consensus 180 h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~ 259 (430)
T 2xyi_A 180 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIW 259 (430)
T ss_dssp CSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred CCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEE
Confidence 999999999999988 999999999999999987322 4566789999999999984 3 88999999999999
Q ss_pred eCcccCCCcceeeeeeeccCCccEEEEEEccCCC-EEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEec--C-CE
Q 012007 304 RRELQGKGTKHCLAQVLLKHENAVTALAVNQESA-VVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA--G-NL 379 (473)
Q Consensus 304 d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~-~~ 379 (473)
|++.... ......+..|...|++++|+|++. +|++|+.||.|++||++........+.+|...+.++.+. + .+
T Consensus 260 d~~~~~~---~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~ 336 (430)
T 2xyi_A 260 DTRNNNT---SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETI 336 (430)
T ss_dssp ETTCSCS---SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTE
T ss_pred ECCCCCC---CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCE
Confidence 9985421 123445568999999999999886 788999999999999998666667788899889877764 5 57
Q ss_pred EEEEeCCCcEEEEecCCCCc-----------eeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEE
Q 012007 380 VFSGSADRNICLWRREESGA-----------HSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVK 448 (473)
Q Consensus 380 l~s~~~dg~i~iwd~~~~~~-----------~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~ 448 (473)
|++++.|+.|+|||+..... ..++..+.+|...|++++|+|++.. +|++++.||.|+
T Consensus 337 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~------------~l~s~s~dg~i~ 404 (430)
T 2xyi_A 337 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW------------IICSVSEDNIMQ 404 (430)
T ss_dssp EEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTT------------EEEEEETTSEEE
T ss_pred EEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCC------------EEEEEECCCCEE
Confidence 99999999999999986321 2677888899999999999999874 799999999999
Q ss_pred EEEcCCC
Q 012007 449 VWRVSEH 455 (473)
Q Consensus 449 iW~i~~~ 455 (473)
||++...
T Consensus 405 iw~~~~~ 411 (430)
T 2xyi_A 405 VWQMAEN 411 (430)
T ss_dssp EEEECHH
T ss_pred EeEcccc
Confidence 9999753
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=261.87 Aligned_cols=247 Identities=13% Similarity=0.098 Sum_probs=194.2
Q ss_pred CcccEEEEEEeCCCCEE-EEEeCCCeEEEEeCC--CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccC
Q 012007 160 NSGLVKAIIISGDSNKI-FTGHQDGKIRIWKVS--RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYD 236 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l-~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (473)
|.+.|.+++|+|++++| ++|+.||.|++||+. +++....... ..|..
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~------------------------------~~~~~ 150 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR------------------------------FCFSK 150 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE------------------------------EECSS
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec------------------------------ccCCC
Confidence 44579999999999996 899999999999998 5554333221 13778
Q ss_pred CeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeE----EeecCCCceeEEEEcCC---C-EEEEEeCCCcEEEEeCccc
Q 012007 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE----SINAHDDAINSVVAGFD---S-LVFTGSADGTVKVWRRELQ 308 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~----~~~~~~~~v~~l~~~~~---~-~l~s~~~dg~i~vwd~~~~ 308 (473)
.|.+++|+|++++|++|+.||.|++|++.+++... .+.+|...|.+++|+|+ + +|++++.|+.|++||++..
T Consensus 151 ~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~ 230 (450)
T 2vdu_B 151 RPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC 230 (450)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred CceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC
Confidence 99999999999999999999999999998877554 77889999999999998 7 8999999999999998733
Q ss_pred CCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceee------------------------
Q 012007 309 GKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLR------------------------ 364 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------------------ 364 (473)
. .......+|...|.+++|+ ++.+|++++.|+.|++||++++........
T Consensus 231 ~-----~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (450)
T 2vdu_B 231 F-----IVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENND 304 (450)
T ss_dssp T-----CEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------
T ss_pred c-----eeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccc
Confidence 2 2333356899999999999 999999999999999999987654322211
Q ss_pred cCcceEEE--EEecCCEEEEEe-CCCcEEEEec--CCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEE
Q 012007 365 GHKMAVLC--LAAAGNLVFSGS-ADRNICLWRR--EESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVY 439 (473)
Q Consensus 365 ~~~~~v~~--~~~~~~~l~s~~-~dg~i~iwd~--~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~ 439 (473)
.....+.+ +.+++++|++++ .|+.|++|++ ........+..+.+| +.|.+++|+|++. +++
T Consensus 305 ~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~-------------~v~ 370 (450)
T 2vdu_B 305 IIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEF-------------QVT 370 (450)
T ss_dssp CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEE-------------EEE
T ss_pred cceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcE-------------EEE
Confidence 11233444 445699999998 8999999999 553445777888888 8899999999642 344
Q ss_pred EeeC------CCcEEEEEcCCCC
Q 012007 440 SGSL------DKSVKVWRVSEHA 456 (473)
Q Consensus 440 s~s~------Dg~v~iW~i~~~~ 456 (473)
.++. +..|.+|.+....
T Consensus 371 ~~~~~~~~~~~~~i~v~~~~~~~ 393 (450)
T 2vdu_B 371 LDNKESSGVQKNFAKFIEYNLNE 393 (450)
T ss_dssp ECCTTCCSSCCCSEEEEEEETTT
T ss_pred EecccCCCCCCcceEEEEEEcCC
Confidence 4343 5568999887543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-31 Score=257.32 Aligned_cols=240 Identities=28% Similarity=0.492 Sum_probs=208.6
Q ss_pred ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeecc
Q 012007 156 GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY 235 (473)
Q Consensus 156 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (473)
...+|...|.++.+ ++++|++|+.||.|++||+.+++...... +|.
T Consensus 128 ~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~--------------------------------~h~ 173 (435)
T 1p22_A 128 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILT--------------------------------GHT 173 (435)
T ss_dssp CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEEC--------------------------------CCS
T ss_pred cccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEc--------------------------------CCC
Confidence 34457778999887 78899999999999999998876543322 499
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCccee
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHC 315 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 315 (473)
..|.+++| ++++|++|+.||.|++||+.+++.+..+..|...|.++.+++ +.+++|+.||.|++||++... ...
T Consensus 174 ~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~---~~~ 247 (435)
T 1p22_A 174 GSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPT---DIT 247 (435)
T ss_dssp SCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSS---CCE
T ss_pred CcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCC---Cce
Confidence 99999998 788999999999999999999999999999999999999974 599999999999999997533 222
Q ss_pred eeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecC
Q 012007 316 LAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRRE 395 (473)
Q Consensus 316 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~ 395 (473)
....+.+|...|.+++| ++++|++++.||.|++||+++... ...+.+|...+.++.+++++|++|+.||.|++||+.
T Consensus 248 ~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~ 324 (435)
T 1p22_A 248 LRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEF-VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE 324 (435)
T ss_dssp EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred eeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcE-EEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 33567789999999999 678999999999999999988644 456778999999999999999999999999999999
Q ss_pred CCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 396 ESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 396 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
+ ..++..+.+|...|.+++| ++. +|++|+.||.|++||+..+.
T Consensus 325 ~---~~~~~~~~~h~~~v~~~~~--~~~-------------~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 325 C---GACLRVLEGHEELVRCIRF--DNK-------------RIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp T---CCEEEEECCCSSCEEEEEC--CSS-------------EEEEEETTSCEEEEEHHHHT
T ss_pred C---CCEEEEEeCCcCcEEEEEe--cCC-------------EEEEEeCCCcEEEEECCCCC
Confidence 8 5788889999999999999 444 89999999999999997654
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-32 Score=283.14 Aligned_cols=249 Identities=20% Similarity=0.215 Sum_probs=202.7
Q ss_pred eeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC----ccccccccCcccEEEEEEeCC--CCEEEEEeCCCeEEE
Q 012007 116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL----KEFSGFKSNSGLVKAIIISGD--SNKIFTGHQDGKIRI 187 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~----~~~~~~~~h~~~V~~l~~s~~--~~~l~s~~~dg~i~v 187 (473)
+..+.+|.+.|.+++++ |++|++|+.||.|+|||.. +....+.+|.+.|.+++|+++ +++|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 45788999999999865 8899999999999999864 446678899999999999988 999999999999999
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC--CCEEEEEeCCCCEEEEEcC
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE--QGLLYSGSWDKTLKVWRIS 265 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~s~s~dg~v~vwd~~ 265 (473)
||+.++........ .+|...|.+++|+|+ +.+|++|+.||.|++||+.
T Consensus 82 wd~~~~~~~~~~~~------------------------------~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~ 131 (753)
T 3jro_A 82 WKEENGRWSQIAVH------------------------------AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 131 (753)
T ss_dssp EEEETTEEEEEEEE------------------------------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred EECCCCcccccccc------------------------------cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence 99987653222221 148999999999999 9999999999999999998
Q ss_pred CC--eeeEEeecCCCceeEEEEcCC-------------C-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEE
Q 012007 266 DC--KCLESINAHDDAINSVVAGFD-------------S-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTA 329 (473)
Q Consensus 266 ~~--~~~~~~~~~~~~v~~l~~~~~-------------~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~ 329 (473)
++ .....+..|...|.++.|+|. + .+++|+.||.|++||++... ........+..|...|++
T Consensus 132 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~~~~h~~~V~~ 209 (753)
T 3jro_A 132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--QTYVLESTLEGHSDWVRD 209 (753)
T ss_dssp SSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT--TEEEEEEEECCCSSCEEE
T ss_pred cCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc--ccceeeeeecCCCCcEEE
Confidence 77 344566789999999999993 4 89999999999999997543 233455677889999999
Q ss_pred EEEccC---CCEEEEeCCCCcEEEEecCCccc----ccceeecCcceEE--EEEecCCEEEEEeCCCcEEEEecCC
Q 012007 330 LAVNQE---SAVVYCGSSDGLVNFWECEKHLS----HGGVLRGHKMAVL--CLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 330 l~~~~~---~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~--~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
++|+|+ +.+|++++.||.|++||+++... .......|...+. ++++++++|++|+.||.|++|++..
T Consensus 210 l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 210 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred EEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 999999 89999999999999999987531 1222334666665 5556799999999999999999985
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-32 Score=257.94 Aligned_cols=251 Identities=12% Similarity=0.133 Sum_probs=197.2
Q ss_pred ccccccCcccEEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEe
Q 012007 154 FSGFKSNSGLVKAIIISGDS-NKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKI 232 (473)
Q Consensus 154 ~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (473)
...+.+|.+.|.+++|+|++ ++|++|+.||.|++||+.+++....... .
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------------------------~ 115 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG------------------------------M 115 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECC------------------------------C
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeec------------------------------C
Confidence 44667899999999999999 9999999999999999997765433321 1
Q ss_pred eccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEeec---CCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcc
Q 012007 233 RHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINA---HDDAINSVVAGFDS-LVFTGSADGTVKVWRREL 307 (473)
Q Consensus 233 ~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~---~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~ 307 (473)
+|...|.+++|+| ++++|++++.|+.|++||+.. +.+..+.. |...|.+++|++++ +|++++.|+.|++||++.
T Consensus 116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 194 (383)
T 3ei3_B 116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG 194 (383)
T ss_dssp STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS
T ss_pred CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC
Confidence 3899999999999 789999999999999999986 55555544 34789999999987 999999999999999841
Q ss_pred cCCCcceeeeeeeccCCccEEEEEEccCCC-EEEEeCCCCcEEEEecCCcccc--cceeecCcceEEEEE--e-cCCEEE
Q 012007 308 QGKGTKHCLAQVLLKHENAVTALAVNQESA-VVYCGSSDGLVNFWECEKHLSH--GGVLRGHKMAVLCLA--A-AGNLVF 381 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~~~--~-~~~~l~ 381 (473)
.....+..|...|.+++|+|++. +|++++.|+.|++||+++.... .....+|...+.++. + ++++|+
T Consensus 195 -------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~ 267 (383)
T 3ei3_B 195 -------HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLL 267 (383)
T ss_dssp -------CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEE
T ss_pred -------CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEE
Confidence 13456678999999999999998 9999999999999999863211 112236888887766 4 679999
Q ss_pred EEeCCCcEEEEecCCCCceeEEEEe----cCCCCce----------eEEEEecCCCCCcccccCCCccEEEEEeeCCCcE
Q 012007 382 SGSADRNICLWRREESGAHSCLAVL----TGHTGPV----------KCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSV 447 (473)
Q Consensus 382 s~~~dg~i~iwd~~~~~~~~~~~~~----~~h~~~V----------~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v 447 (473)
+++.|+.|++||+.+......+... ..|...+ ..++|+|++. + +|+.||.|
T Consensus 268 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~-------------~--s~s~d~~i 332 (383)
T 3ei3_B 268 TTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQ-------------L--LLNDKRTI 332 (383)
T ss_dssp EEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTT-------------T--CTTCCCCE
T ss_pred EEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcc-------------c--ccCCCCeE
Confidence 9999999999999875432222211 1233333 3455555554 3 78899999
Q ss_pred EEEEcCCCCC
Q 012007 448 KVWRVSEHAP 457 (473)
Q Consensus 448 ~iW~i~~~~~ 457 (473)
+|||+.+++.
T Consensus 333 ~iwd~~~~~~ 342 (383)
T 3ei3_B 333 DIYDANSGGL 342 (383)
T ss_dssp EEEETTTCCE
T ss_pred EEEecCCCce
Confidence 9999988764
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-31 Score=252.46 Aligned_cols=236 Identities=18% Similarity=0.262 Sum_probs=196.5
Q ss_pred ecccEEEEEe--cCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeee
Q 012007 122 KEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASV 197 (473)
Q Consensus 122 h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~ 197 (473)
|.+.|.++++ ++++|++|+.||.|++||.. +.+..+.+|...|.+++|+ +++|++|+.||.|++||+.......
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~ 210 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQI 210 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEE
T ss_pred CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCccee
Confidence 7888998887 58899999999999999965 5567788999999999995 5699999999999999998543222
Q ss_pred EEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCC
Q 012007 198 HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHD 277 (473)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 277 (473)
.. ..+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+..|.
T Consensus 211 ~~-------------------------------~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 259 (401)
T 4aez_A 211 GT-------------------------------LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHN 259 (401)
T ss_dssp EE-------------------------------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCS
T ss_pred eE-------------------------------EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCc
Confidence 11 12489999999999999999999999999999999999999999999
Q ss_pred CceeEEEEcCCC--EEEEEe--CCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEE--eCCCCcEEEE
Q 012007 278 DAINSVVAGFDS--LVFTGS--ADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC--GSSDGLVNFW 351 (473)
Q Consensus 278 ~~v~~l~~~~~~--~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~--~~~dg~i~iw 351 (473)
..|.+++|+|++ ++++++ .|+.|++||++.+. ....+ .+...|.+++|+|++++|++ |+.||.|++|
T Consensus 260 ~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~------~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~ 332 (401)
T 4aez_A 260 AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA------RVNTV-DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIW 332 (401)
T ss_dssp SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC------EEEEE-ECSSCEEEEEECSSSSEEEEEECTTTCEEEEE
T ss_pred ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC------EEEEE-eCCCcEEEEEECCCCCeEEEEeecCCCcEEEE
Confidence 999999999976 666765 79999999997432 12222 46778999999999999999 6689999999
Q ss_pred ecCCcccc-cceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCC
Q 012007 352 ECEKHLSH-GGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREES 397 (473)
Q Consensus 352 d~~~~~~~-~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~ 397 (473)
|+.+.... ...+.+|...+.++. +++.+|++++.||.|++|++.++
T Consensus 333 ~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 333 SYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp EEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred ecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 99874332 234567888776555 56999999999999999999884
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-31 Score=259.42 Aligned_cols=263 Identities=14% Similarity=0.132 Sum_probs=193.8
Q ss_pred cccccCcccEEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee
Q 012007 155 SGFKSNSGLVKAIIISG-DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (473)
....+|...|+||+|+| ++++||+|+.||.|+|||+.+++....... .+
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~------------------------------~g 162 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKG------------------------------IG 162 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECC------------------------------CS
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEc------------------------------cC
Confidence 34556888999999999 567999999999999999987754332221 24
Q ss_pred ccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEeec--CCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccC
Q 012007 234 HYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINA--HDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 234 ~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~ 309 (473)
|.+.|++|+|+| ++++|++|+.||+|++||++++........ +...+.++++++++ +|++|+.||.|++||++..
T Consensus 163 H~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~- 241 (435)
T 4e54_B 163 AGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK- 241 (435)
T ss_dssp SSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-
Confidence 999999999998 789999999999999999987654433333 34467889999987 8999999999999998621
Q ss_pred CCcceeeeeeeccCCccEEEEEEccCCC-EEEEeCCCCcEEEEecCCccccc--ceeecCcceEEEEE--ecCCEEEEEe
Q 012007 310 KGTKHCLAQVLLKHENAVTALAVNQESA-VVYCGSSDGLVNFWECEKHLSHG--GVLRGHKMAVLCLA--AAGNLVFSGS 384 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~~~--~~~~~l~s~~ 384 (473)
....+..|...|++++|+|++. +|++++.|+.|++||+++..... ....+|...|.+++ ++|++|++|+
T Consensus 242 ------~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~ 315 (435)
T 4e54_B 242 ------ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD 315 (435)
T ss_dssp ------BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE
T ss_pred ------eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc
Confidence 2355678999999999999875 78899999999999998654332 23457888887765 5799999999
Q ss_pred CCCcEEEEecCCCCceeEEEEecCCCC------ceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 385 ADRNICLWRREESGAHSCLAVLTGHTG------PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 385 ~dg~i~iwd~~~~~~~~~~~~~~~h~~------~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
.||.|+|||+.+. .+...+..|.. .+....|+|++... ......++..+++++..++.|++||+.+++..
T Consensus 316 ~D~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~ 391 (435)
T 4e54_B 316 QKSEIRVYSASQW---DCPLGLIPHPHRHFQHLTPIKAAWHPRYNLI-VVGRYPDPNFKSCTPYELRTIDVFDGNSGKMM 391 (435)
T ss_dssp SSSCEEEEESSSS---SSEEEECCCCCCCCSSSCCCBCEECSSSSCE-EEECCCCTTSCCSSTTCCCCEEEECSSSCCEE
T ss_pred CCCEEEEEECCCC---ccceEEecccccccccceeEEEEEcCCCCEE-EEEEcCCCCeEEEEecCCCEEEEEECCCCcEE
Confidence 9999999999883 44444444432 23445667665510 00000011112233335578999999887643
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-32 Score=258.99 Aligned_cols=248 Identities=13% Similarity=0.081 Sum_probs=176.9
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE
Q 012007 161 SGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 240 (473)
...+....+.+++.+|++|+.|++|++||+..++.........+ .+|.+.|.+
T Consensus 89 ~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~---------------------------~gH~~~v~~ 141 (393)
T 4gq1_A 89 DGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGK---------------------------SGHHNFVND 141 (393)
T ss_dssp --------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTT---------------------------TSCSSCEEE
T ss_pred CCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeeccc---------------------------CCCCCceEE
Confidence 33344444455667899999999999999988765444333222 159999999
Q ss_pred EEEcC--------CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCC
Q 012007 241 LSLNA--------EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGK 310 (473)
Q Consensus 241 l~~~~--------~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~ 310 (473)
++|+| ++++|++|+.|++|+|||++++.++..+..|...|.+++|+|++ +|++++.||.|++||++....
T Consensus 142 v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~ 221 (393)
T 4gq1_A 142 IDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLS 221 (393)
T ss_dssp EEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-
T ss_pred EEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcc
Confidence 99997 78999999999999999999998888888899999999999986 799999999999999975432
Q ss_pred Ccce-------------------eeeeeeccCCccEEEEEEc-cCCCEEEEeCCCCcEEEEecCCcccccceeecCcceE
Q 012007 311 GTKH-------------------CLAQVLLKHENAVTALAVN-QESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAV 370 (473)
Q Consensus 311 ~~~~-------------------~~~~~~~~~~~~v~~l~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 370 (473)
.... .......+|...+.++.|. ++++.|++++.|+.+++||+...... ..+..|...+
T Consensus 222 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~-~~l~~~~~~~ 300 (393)
T 4gq1_A 222 AEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDY-NEISDSTMKL 300 (393)
T ss_dssp ---------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------
T ss_pred cccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCC-ceEeeecCcc
Confidence 1100 0011234677889999987 79999999999999999998754322 2222222222
Q ss_pred E--------------------EEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCccc
Q 012007 371 L--------------------CLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEY 428 (473)
Q Consensus 371 ~--------------------~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~ 428 (473)
. ++.+ ++.++++|+.||.|++||+.++ .++..+.+|..+|.+++|+|+++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~---~~~~~~~~~~~~V~svafspdG~----- 372 (393)
T 4gq1_A 301 GPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK---DSNSIPIQLGMPIVDFCWHQDGS----- 372 (393)
T ss_dssp ---CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT---TCCEEEEECSSCEEEEEECTTSS-----
T ss_pred ccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC---cEEEEecCCCCcEEEEEEcCCCC-----
Confidence 1 1111 3457788889999999999884 44555667889999999999999
Q ss_pred ccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 429 HQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 429 ~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
+||+++.|| +.+|++.
T Consensus 373 --------~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 373 --------HLAIATEGS-VLLTRLM 388 (393)
T ss_dssp --------EEEEEESSE-EEEEEEG
T ss_pred --------EEEEEeCCC-eEEEEEe
Confidence 899998766 6677664
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-30 Score=247.30 Aligned_cols=254 Identities=17% Similarity=0.221 Sum_probs=202.5
Q ss_pred ccccccccCcccEEEEEEeCC---CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecce
Q 012007 152 KEFSGFKSNSGLVKAIIISGD---SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRS 228 (473)
Q Consensus 152 ~~~~~~~~h~~~V~~l~~s~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (473)
+.+..+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+........
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~---------------------------- 81 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKA---------------------------- 81 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEE----------------------------
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEE----------------------------
Confidence 556778899999999999999 5999999999999999998733222111
Q ss_pred eeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEE--cCCC-EEEEEeCCCcEEEEeC
Q 012007 229 VLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVA--GFDS-LVFTGSADGTVKVWRR 305 (473)
Q Consensus 229 ~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~--~~~~-~l~s~~~dg~i~vwd~ 305 (473)
..+|...|.+++|+|++++|++++.||.|++||+.+++.+. +..|...|.++.| ++++ +|++++.||.|++||+
T Consensus 82 --~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 158 (368)
T 3mmy_A 82 --QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158 (368)
T ss_dssp --EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred --eccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence 12499999999999999999999999999999999998776 4569999999999 7877 7999999999999999
Q ss_pred cccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccc---eeecCcceEEEEEecCCE---
Q 012007 306 ELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGG---VLRGHKMAVLCLAAAGNL--- 379 (473)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~--- 379 (473)
+... ....+..+ ..+.++.+.+ ..+++++.++.+.+|+++....... ....+...+.++.++...
T Consensus 159 ~~~~------~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (368)
T 3mmy_A 159 RSSN------PMMVLQLP-ERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPT 229 (368)
T ss_dssp SCSS------CSEEEECS-SCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEE
T ss_pred CCCc------EEEEEecC-CCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCC
Confidence 7433 22333333 3566666664 4788888999999999986433221 223455566667666554
Q ss_pred -EEEEeCCCcEEEEecCCCCceeEEEEecCCCC------------ceeEEEEecCCCCCcccccCCCccEEEEEeeCCCc
Q 012007 380 -VFSGSADRNICLWRREESGAHSCLAVLTGHTG------------PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKS 446 (473)
Q Consensus 380 -l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~------------~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~ 446 (473)
+++++.||.|++|++........+..+.+|.. .|++++|+|++. +|++|+.||.
T Consensus 230 ~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-------------~l~s~~~dg~ 296 (368)
T 3mmy_A 230 GFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG-------------TLATVGSDGR 296 (368)
T ss_dssp EEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTC-------------CEEEEETTSC
T ss_pred eEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCC-------------EEEEEccCCe
Confidence 99999999999999998543356677777776 799999999998 8999999999
Q ss_pred EEEEEcCCCCCC
Q 012007 447 VKVWRVSEHAPD 458 (473)
Q Consensus 447 v~iW~i~~~~~~ 458 (473)
|++||+..+...
T Consensus 297 i~iwd~~~~~~~ 308 (368)
T 3mmy_A 297 FSFWDKDARTKL 308 (368)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECCCCcEE
Confidence 999999976543
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-30 Score=252.57 Aligned_cols=251 Identities=16% Similarity=0.222 Sum_probs=205.0
Q ss_pred eeeeeeecccEEEEEec---CCEEEEeeCCCcEEEeeCC------------ccccccccCcccEEEEEEeCCCC-EEEEE
Q 012007 116 IGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNL------------KEFSGFKSNSGLVKAIIISGDSN-KIFTG 179 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~---g~~l~tg~~dg~i~vwd~~------------~~~~~~~~h~~~V~~l~~s~~~~-~l~s~ 179 (473)
+..+.+|.+.|.++.++ +.+||+|+.||.|+|||.. ..+..+.+|...|.+++|+|++. +|++|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 35567899999988875 4599999999999999864 34556788999999999999998 99999
Q ss_pred eCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCC
Q 012007 180 HQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKT 258 (473)
Q Consensus 180 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~ 258 (473)
+.||.|++|++........... ......+|...|.+++|+| ++.+|++++.|+.
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~-------------------------~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~ 255 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVID-------------------------AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 255 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEE-------------------------CSEEECCCSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred eCCCeEEEEeCCCCCCCCceec-------------------------cceeecCCCCCEeeeEEeCCCCCEEEEEeCCCe
Confidence 9999999999987432110000 0011224899999999999 7889999999999
Q ss_pred EEEEEcCCC---eeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEc
Q 012007 259 LKVWRISDC---KCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVN 333 (473)
Q Consensus 259 v~vwd~~~~---~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 333 (473)
|++||++++ +.+..+..|...|++++|+|++ ++++|+.||.|++||++.. ......+..|...|++++|+
T Consensus 256 i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~-----~~~~~~~~~h~~~v~~i~~s 330 (430)
T 2xyi_A 256 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL-----KLKLHSFESHKDEIFQVQWS 330 (430)
T ss_dssp EEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT-----TSCSEEEECCSSCEEEEEEC
T ss_pred EEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC-----CCCeEEeecCCCCEEEEEEC
Confidence 999999987 5777888999999999999987 6889999999999999842 23456677899999999999
Q ss_pred cCC-CEEEEeCCCCcEEEEecCCcc-------------cccceeecCcceEEEEEec--CC-EEEEEeCCCcEEEEecCC
Q 012007 334 QES-AVVYCGSSDGLVNFWECEKHL-------------SHGGVLRGHKMAVLCLAAA--GN-LVFSGSADRNICLWRREE 396 (473)
Q Consensus 334 ~~~-~~l~~~~~dg~i~iwd~~~~~-------------~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~iwd~~~ 396 (473)
|++ .+|++++.||.|++||+.... .......+|...+.+++++ +. +|++++.||.|+||++..
T Consensus 331 p~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 331 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp SSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred CCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 988 479999999999999997622 2334556788888777764 66 999999999999999875
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.98 E-value=6.3e-31 Score=253.40 Aligned_cols=247 Identities=15% Similarity=0.231 Sum_probs=197.6
Q ss_pred ceeeeeeecccEEEEEe---cCCEEEEeeCCCcEEEeeCCc---------cccccccCcccEEEEEEeCCC-CEEEEEeC
Q 012007 115 LIGSIVRKEGHIYSLAA---SGDLLYTGSDSKNIRVWKNLK---------EFSGFKSNSGLVKAIIISGDS-NKIFTGHQ 181 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~---~g~~l~tg~~dg~i~vwd~~~---------~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~ 181 (473)
.+..+.+|.+.|.++++ ++++|++|+.||.|+|||+.. .+..+.+|...|.+++|+|++ ++|++|+.
T Consensus 73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~ 152 (402)
T 2aq5_A 73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC 152 (402)
T ss_dssp TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET
T ss_pred CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC
Confidence 35567889999999987 578999999999999999653 356788899999999999998 69999999
Q ss_pred CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEE
Q 012007 182 DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKV 261 (473)
Q Consensus 182 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~v 261 (473)
||.|++||+.+++....... .+|...|.+++|+|++++|++++.|+.|++
T Consensus 153 dg~i~iwd~~~~~~~~~~~~------------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 202 (402)
T 2aq5_A 153 DNVILVWDVGTGAAVLTLGP------------------------------DVHPDTIYSVDWSRDGALICTSCRDKRVRV 202 (402)
T ss_dssp TSCEEEEETTTTEEEEEECT------------------------------TTCCSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred CCEEEEEECCCCCccEEEec------------------------------CCCCCceEEEEECCCCCEEEEEecCCcEEE
Confidence 99999999998764433210 138899999999999999999999999999
Q ss_pred EEcCCCeeeEEe-ecCCCc-eeEEEEcCCC-EEEEE---eCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC
Q 012007 262 WRISDCKCLESI-NAHDDA-INSVVAGFDS-LVFTG---SADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE 335 (473)
Q Consensus 262 wd~~~~~~~~~~-~~~~~~-v~~l~~~~~~-~l~s~---~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 335 (473)
||+++++.+..+ ..|... +.++.|++++ +|++| +.|+.|++||++.... ........|...+.+++|+|+
T Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~~ 278 (402)
T 2aq5_A 203 IEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE----PLSLQELDTSSGVLLPFFDPD 278 (402)
T ss_dssp EETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS----CSEEEECCCCSSCEEEEEETT
T ss_pred EeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC----CceEEeccCCCceeEEEEcCC
Confidence 999999999998 688776 8999999998 56666 6899999999975332 112223457788999999999
Q ss_pred CCEEE-EeCCCCcEEEEecCCcccccceeec--CcceEEE--EEecCCEEEEEeCCCcEEEEecCCC
Q 012007 336 SAVVY-CGSSDGLVNFWECEKHLSHGGVLRG--HKMAVLC--LAAAGNLVFSGSADRNICLWRREES 397 (473)
Q Consensus 336 ~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~--~~~~~~~l~s~~~dg~i~iwd~~~~ 397 (473)
+++|+ +++.||.|++||+.+.......+.. |...+.+ +++++.++++ .++.+++|++.++
T Consensus 279 ~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 279 TNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp TTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred CCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence 99886 5668999999999876542333333 3355544 4556776654 5679999999873
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=244.27 Aligned_cols=236 Identities=22% Similarity=0.329 Sum_probs=194.4
Q ss_pred eeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCe
Q 012007 120 VRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNA 195 (473)
Q Consensus 120 ~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 195 (473)
.+|.+.|.+++|+ |++||+|+.||+|+|||.. +.+..+.+|...|.++.++ +.+|++|+.|+.+++||......
T Consensus 144 ~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~ 221 (420)
T 4gga_A 144 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEH 221 (420)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC
T ss_pred cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccce
Confidence 4677889998875 8899999999999999975 5577888999999999886 55999999999999999876553
Q ss_pred eeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe----eeE
Q 012007 196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK----CLE 271 (473)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~----~~~ 271 (473)
..... .+|...+.++.|++++.++++++.|+.|++|+..+++ .+.
T Consensus 222 ~~~~~-------------------------------~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~ 270 (420)
T 4gga_A 222 HVATL-------------------------------SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ 270 (420)
T ss_dssp EEEEE-------------------------------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSE
T ss_pred eeEEe-------------------------------cccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeee
Confidence 32221 2499999999999999999999999999999998765 356
Q ss_pred EeecCCCceeEEEEcCCC--EEEE--EeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC--CC
Q 012007 272 SINAHDDAINSVVAGFDS--LVFT--GSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS--SD 345 (473)
Q Consensus 272 ~~~~~~~~v~~l~~~~~~--~l~s--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~--~d 345 (473)
....|...|.+++|+|.+ ++++ |+.|+.|++||++.+. ....+ .+...+.++.|+++++.+++++ .|
T Consensus 271 ~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~------~~~~~-~~~~~v~~~~~~~~~~~lv~~sg~~d 343 (420)
T 4gga_A 271 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA------CLSAV-DAHSQVCSILWSPHYKELISGHGFAQ 343 (420)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE------EEEEE-ECSSCEEEEEEETTTTEEEEEECTTT
T ss_pred eecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc------cceee-ccccceeeeeecCCCCeEEEEEecCC
Confidence 677899999999999876 5554 4679999999997432 22223 3456789999999998887654 79
Q ss_pred CcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCC
Q 012007 346 GLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
+.|+|||+.+... ...+.+|...|.+++ ++|++|++|+.|++|+|||+..
T Consensus 344 ~~I~iwd~~~~~~-v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 344 NQLVIWKYPTMAK-VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp CCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred CEEEEEECCCCcE-EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 9999999988654 457789999998776 4699999999999999999986
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=244.97 Aligned_cols=236 Identities=9% Similarity=0.063 Sum_probs=179.9
Q ss_pred EeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCC
Q 012007 169 ISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQG 248 (473)
Q Consensus 169 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 248 (473)
+.+++++|++|+.||.|++||+.+++...... ...|.++.|+|+
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~----------------------------------~~~v~~~~~~~~-- 87 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT----------------------------------TPNPRTGGEHPA-- 87 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE----------------------------------EECCCTTCCCCS--
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe----------------------------------cCCceeeeeCCc--
Confidence 34577899999999999999998876543332 235666778877
Q ss_pred EEEEEeCCCCEEEEEcC---------CCeeeEEee-cCCCceeEEEEcC--CC-EEEEEeCCCcEEEEeCcccCCCccee
Q 012007 249 LLYSGSWDKTLKVWRIS---------DCKCLESIN-AHDDAINSVVAGF--DS-LVFTGSADGTVKVWRRELQGKGTKHC 315 (473)
Q Consensus 249 ~l~s~s~dg~v~vwd~~---------~~~~~~~~~-~~~~~v~~l~~~~--~~-~l~s~~~dg~i~vwd~~~~~~~~~~~ 315 (473)
+++++.|++|++|+.. +++.+..+. .|...|.+++++| ++ ++++++.||.|++||++.+. .
T Consensus 88 -~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-----~ 161 (343)
T 3lrv_A 88 -IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-----Q 161 (343)
T ss_dssp -EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC-----E
T ss_pred -eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-----E
Confidence 9999999999999665 455455554 6778999999999 76 89999999999999997432 2
Q ss_pred eeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeec-CcceEEEEEe--cCCEEEEEeCCCcEEEE
Q 012007 316 LAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRG-HKMAVLCLAA--AGNLVFSGSADRNICLW 392 (473)
Q Consensus 316 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~s~~~dg~i~iw 392 (473)
.......+...|++++|+|++.+|++|+.||.|++||++++......+.. |...|.++.+ ++.+|++++ |+.|++|
T Consensus 162 ~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iw 240 (343)
T 3lrv_A 162 YIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCF 240 (343)
T ss_dssp EEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEE
T ss_pred EEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEE
Confidence 22222456668999999999999999999999999999987665345566 8989987765 688999999 5599999
Q ss_pred ecCCCCceeEEEEecCCCCcee--EEEEecCCCCCcccccCCCccEEEEEeeC-CCcEEEEEcCCCCCCcc
Q 012007 393 RREESGAHSCLAVLTGHTGPVK--CLAVEEDRDHDHEYHQKGDQRWTVYSGSL-DKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 393 d~~~~~~~~~~~~~~~h~~~V~--~l~~~~~~~~~~~~~~~~~~~~~l~s~s~-Dg~v~iW~i~~~~~~~~ 460 (473)
|+++......+..+..|...+. +++|+|++. +|++++. |+.|+||++......+.
T Consensus 241 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------------~l~~~s~~d~~i~v~~~~~~~~~~~ 298 (343)
T 3lrv_A 241 DLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGK-------------NMIAYSNESNSLTIYKFDKKTKNWT 298 (343)
T ss_dssp ETTSSTTCBSSCCCBC-----CCEEEEECTTSS-------------EEEEEETTTTEEEEEEECTTTCSEE
T ss_pred EcCCCCcceeecccccccccccceEEEECCCCC-------------EEEEecCCCCcEEEEEEcccccceE
Confidence 9998543333333334555555 699999998 8999888 99999999977655443
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-28 Score=236.93 Aligned_cols=263 Identities=13% Similarity=0.119 Sum_probs=204.0
Q ss_pred CEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEE-EEEeCCCeEEEEeCCCCCeeeEEeecccccccee
Q 012007 134 DLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKI-FTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDY 210 (473)
Q Consensus 134 ~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 210 (473)
.++++++.|+.|++||.. +.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++......
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~---------- 71 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP---------- 71 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE----------
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE----------
Confidence 468889999999999975 3444555554 58999999999987 567789999999998876544332
Q ss_pred EeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC
Q 012007 211 VKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS 289 (473)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~ 289 (473)
+...+.+++|+|++++|++++ .++.|++||+.+++.+..+..+ ..+.+++|++++
T Consensus 72 -----------------------~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg 127 (391)
T 1l0q_A 72 -----------------------AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDG 127 (391)
T ss_dssp -----------------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTS
T ss_pred -----------------------CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCC
Confidence 444899999999999886554 6799999999999998888755 468999999998
Q ss_pred -EE-EEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEE-EEeCCCCcEEEEecCCcccccceeecC
Q 012007 290 -LV-FTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVV-YCGSSDGLVNFWECEKHLSHGGVLRGH 366 (473)
Q Consensus 290 -~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~ 366 (473)
.+ ++++.++.|++||+.... ....+.. ...+.+++|+|++++| ++++.++.|++||+++..... .+. +
T Consensus 128 ~~l~~~~~~~~~v~~~d~~~~~------~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~-~~~-~ 198 (391)
T 1l0q_A 128 KKLYVTNNGDKTVSVINTVTKA------VINTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID-TVK-V 198 (391)
T ss_dssp SEEEEEETTTTEEEEEETTTTE------EEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EEE-C
T ss_pred CEEEEEeCCCCEEEEEECCCCc------EEEEEec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE-EEe-c
Confidence 45 688889999999986322 2233333 3567999999999877 677889999999998764432 222 3
Q ss_pred cceE--EEEEecCCEEEEEe---CCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEe
Q 012007 367 KMAV--LCLAAAGNLVFSGS---ADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG 441 (473)
Q Consensus 367 ~~~v--~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~ 441 (473)
...+ .++++++++|++++ .++.|++||+.+ .+.+..+..|. .+.+++|+|+++. +++++
T Consensus 199 ~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~---~~~~~~~~~~~-~~~~~~~s~dg~~------------l~~s~ 262 (391)
T 1l0q_A 199 EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT---NKITARIPVGP-DPAGIAVTPDGKK------------VYVAL 262 (391)
T ss_dssp SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT---TEEEEEEECCS-SEEEEEECTTSSE------------EEEEE
T ss_pred CCCccceEECCCCCEEEEEecCcCCCcEEEEECCC---CeEEEEEecCC-CccEEEEccCCCE------------EEEEc
Confidence 3344 44556788888888 689999999988 45666776665 4789999999972 44788
Q ss_pred eCCCcEEEEEcCCCC
Q 012007 442 SLDKSVKVWRVSEHA 456 (473)
Q Consensus 442 s~Dg~v~iW~i~~~~ 456 (473)
+.|+.|++||+..++
T Consensus 263 ~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 263 SFXNTVSVIDTATNT 277 (391)
T ss_dssp TTTTEEEEEETTTTE
T ss_pred CCCCEEEEEECCCCc
Confidence 899999999998754
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-29 Score=236.16 Aligned_cols=241 Identities=10% Similarity=0.122 Sum_probs=182.3
Q ss_pred ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeE
Q 012007 152 KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231 (473)
Q Consensus 152 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (473)
+.+.....|...|.+++|+|||++|++|+.+| +++|++.........
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~-------------------------------- 56 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ-------------------------------- 56 (355)
T ss_dssp ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE--------------------------------
T ss_pred CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee--------------------------------
Confidence 44556688999999999999999999988775 789998765432211
Q ss_pred eeccCCeeEEEEcCCCCEE-EEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCC
Q 012007 232 IRHYDAVSCLSLNAEQGLL-YSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGK 310 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~~~~l-~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~ 310 (473)
+...+..+++.++++.+ ++++.|++|++||+.+++++..+. +...|.++.++++..+++ .|+.|++||+....+
T Consensus 57 --~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~--~~~~i~i~d~~~~~~ 131 (355)
T 3vu4_A 57 --EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVS--YGDVISVFKFGNPWK 131 (355)
T ss_dssp --ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEE--ETTEEEEEESSTTCC
T ss_pred --ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEE--EcCEEEEEECCCCce
Confidence 22357788898888877 567788999999999999999887 667899999988764443 488999999974311
Q ss_pred CcceeeeeeeccCCccEEEEEEccCCCEEEE--eCCCCcEEEEecCCcc--------------cc-cceeecCcceEEEE
Q 012007 311 GTKHCLAQVLLKHENAVTALAVNQESAVVYC--GSSDGLVNFWECEKHL--------------SH-GGVLRGHKMAVLCL 373 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~--~~~dg~i~iwd~~~~~--------------~~-~~~~~~~~~~v~~~ 373 (473)
....+.. ....+++++ .++++ |+.||.|++||+++.. .. ...+.+|...|.++
T Consensus 132 -----~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~ 201 (355)
T 3vu4_A 132 -----RITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMV 201 (355)
T ss_dssp -----BSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEE
T ss_pred -----eeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEE
Confidence 1112222 344556666 55655 6899999999998643 11 46778999998777
Q ss_pred Ee--cCCEEEEEeCCCc-EEEEecCCCCceeEEEEec-C-CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEE
Q 012007 374 AA--AGNLVFSGSADRN-ICLWRREESGAHSCLAVLT-G-HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVK 448 (473)
Q Consensus 374 ~~--~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~-~-h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~ 448 (473)
++ ++++|++|+.|++ |++||+.+ .+++..+. + |...|++++|+|++. +|++++.|++|+
T Consensus 202 ~~s~~g~~l~s~s~d~~~v~iwd~~~---~~~~~~~~~g~h~~~v~~~~~s~~~~-------------~l~s~s~d~~v~ 265 (355)
T 3vu4_A 202 RLNRKSDMVATCSQDGTIIRVFKTED---GVLVREFRRGLDRADVVDMKWSTDGS-------------KLAVVSDKWTLH 265 (355)
T ss_dssp EECTTSSEEEEEETTCSEEEEEETTT---CCEEEEEECTTCCSCEEEEEECTTSC-------------EEEEEETTCEEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEECCC---CcEEEEEEcCCCCCcEEEEEECCCCC-------------EEEEEECCCEEE
Confidence 65 6999999999998 99999998 56777777 5 999999999999998 899999999999
Q ss_pred EEEcCCCC
Q 012007 449 VWRVSEHA 456 (473)
Q Consensus 449 iW~i~~~~ 456 (473)
|||+....
T Consensus 266 iw~~~~~~ 273 (355)
T 3vu4_A 266 VFEIFNDQ 273 (355)
T ss_dssp EEESSCCS
T ss_pred EEEccCCC
Confidence 99998753
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-29 Score=245.04 Aligned_cols=273 Identities=14% Similarity=0.115 Sum_probs=200.0
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC---eeeEEeeccc----ccc------ceeEeecCCCcceEEE----
Q 012007 161 SGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKN---ASVHKRVGSL----PTF------KDYVKSSVNPKNYVEV---- 223 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~----~~~------~~~~~~~~~~~~~~~~---- 223 (473)
..++.+++|+++|++|+++ .++.|++||+.+++ .......... +.. ................
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999966665 57899999999887 3332221110 000 0000000000000000
Q ss_pred --------eecceeeEeeccCCeeEEEEcCCCCEE-EEEeCCCCEEEEEcC--CCeeeEEee--cCCCceeEEEEcCCC-
Q 012007 224 --------RRNRSVLKIRHYDAVSCLSLNAEQGLL-YSGSWDKTLKVWRIS--DCKCLESIN--AHDDAINSVVAGFDS- 289 (473)
Q Consensus 224 --------~~~~~~~~~~~~~~v~~l~~~~~~~~l-~s~s~dg~v~vwd~~--~~~~~~~~~--~~~~~v~~l~~~~~~- 289 (473)
.........+|.+.|.+++|+|++++| ++|+.||.|++||+. +++.+..+. .|...|.+++|+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 000001112467789999999999996 899999999999999 888888876 567899999999998
Q ss_pred EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC---CCEEEEeCCCCcEEEEecCCcccccceeecC
Q 012007 290 LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE---SAVVYCGSSDGLVNFWECEKHLSHGGVLRGH 366 (473)
Q Consensus 290 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 366 (473)
+|++++.+|.|++|++...... ......+.+|...|++++|+|+ +++|++++.|+.|++||+++.......+.+|
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h 240 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEE--KFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGH 240 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCS--SCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCC
T ss_pred EEEEEeCCCcEEEEecCCcccc--cccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCC
Confidence 8999999999999998743321 1023356789999999999999 9999999999999999998866554556689
Q ss_pred cceEEEEEe-cCCEEEEEeCCCcEEEEecCCCCceeEEEEec-------------------------CCCCceeEEEEec
Q 012007 367 KMAVLCLAA-AGNLVFSGSADRNICLWRREESGAHSCLAVLT-------------------------GHTGPVKCLAVEE 420 (473)
Q Consensus 367 ~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------~h~~~V~~l~~~~ 420 (473)
...+.++.+ ++++|++|+.|+.|++||+.++ +++..+. .+...|.+++|+|
T Consensus 241 ~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 241 KHFVSSICCGKDYLLLSAGGDDKIFAWDWKTG---KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK 317 (450)
T ss_dssp SSCEEEEEECSTTEEEEEESSSEEEEEETTTC---CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred CCceEEEEECCCCEEEEEeCCCeEEEEECCCC---cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence 988877776 6999999999999999999984 4444443 2245789999999
Q ss_pred CCCCCcccccCCCccEEEEEee-CCCcEEEEEc
Q 012007 421 DRDHDHEYHQKGDQRWTVYSGS-LDKSVKVWRV 452 (473)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~s~s-~Dg~v~iW~i 452 (473)
++. +|++++ .|+.|+||++
T Consensus 318 ~~~-------------~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 318 NLP-------------FVAFFVEATKCIIILEM 337 (450)
T ss_dssp SSS-------------EEEEEETTCSEEEEEEE
T ss_pred CCC-------------EEEEEECCCCeEEEEEe
Confidence 988 788887 8999999999
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-31 Score=253.92 Aligned_cols=250 Identities=12% Similarity=0.112 Sum_probs=197.9
Q ss_pred eecccEEEEEe--cCCEEEEeeCCCcEEEeeCCccccccccCcc-----cEEEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Q 012007 121 RKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKEFSGFKSNSG-----LVKAIIISGDSNKIFTGHQDGKIRIWKVSRK 193 (473)
Q Consensus 121 ~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~-----~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~ 193 (473)
.|++.|++++| +|++||+++.||+|+|||....+..+. |.. .|.+++|+|||++||+|+.||+|++||+.++
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~ 161 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKN 161 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence 44677887765 599999999999999999776666666 665 5999999999999999999999999999887
Q ss_pred Cee-----eEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe
Q 012007 194 NAS-----VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK 268 (473)
Q Consensus 194 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~ 268 (473)
... ....+.. ...+|.+.|.+++|+|+| +++++.|++|++||+..++
T Consensus 162 ~l~~~~~i~l~ti~~--------------------------~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~ 213 (588)
T 2j04_A 162 SENTPEFYFESSIRL--------------------------SDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASS 213 (588)
T ss_dssp TTTCCCCEEEEEEEC--------------------------SCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSS
T ss_pred ccccccceeeeeeec--------------------------ccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCc
Confidence 530 1111100 001388899999999999 8889999999999998877
Q ss_pred e---eEEe-ecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEE--ccCCCEEEEe
Q 012007 269 C---LESI-NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAV--NQESAVVYCG 342 (473)
Q Consensus 269 ~---~~~~-~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~~~l~~~ 342 (473)
. ..++ .+|...|.+++|+ +..+++++ ++.|++||+..+ . ......+|...|..++| +|++..|+++
T Consensus 214 ~~~~~~tL~~~h~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~-----~-~~~~~~gh~~~V~~va~~~s~d~~~La~a 285 (588)
T 2j04_A 214 HQPVSRMIQNASRRKITDLKIV-DYKVVLTC-PGYVHKIDLKNY-----S-ISSLKTGSLENFHIIPLNHEKESTILLMS 285 (588)
T ss_dssp SCCCEEEEECCCSSCCCCEEEE-TTEEEEEC-SSEEEEEETTTT-----E-EEEEECSCCSCCCEEEETTCSSCEEEEEC
T ss_pred cccceeeecccccCcEEEEEEE-CCEEEEEe-CCeEEEEECCCC-----e-EEEEEcCCCceEEEEEeeeCCCCCEEEEE
Confidence 3 3566 4788999999999 67888887 699999998632 2 22223379999999999 9999999999
Q ss_pred CCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCC
Q 012007 343 SSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDR 422 (473)
Q Consensus 343 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 422 (473)
+.||+ ++|..+. ..+++++..+++. |+++++|+.... .+..+.+ ...|.+++|+|+|
T Consensus 286 ~edG~-klw~~d~---------------~~~spd~~l~a~~--d~~v~lW~~~g~----~l~~~~~-~~~I~~va~SPdG 342 (588)
T 2j04_A 286 NKTSY-KVLLEDE---------------LHVTADNIIAPYL--EKKFKKWSTIWN----EFNNYET-TLVIHGISLSPDG 342 (588)
T ss_dssp SSCEE-EEEESSS---------------EEEECCCSSHHHH--HHHHHHTTTTTT----SSSSSCC-EEEEEEEEECTTS
T ss_pred cCCCC-EEEeecc---------------EEECCCceEEEEc--CCEEEEEECCCC----ceeeecc-ceEEEEEEECCCC
Confidence 99999 9998761 3478888877775 999999998652 1334444 6789999999999
Q ss_pred CCCcccccCCCccEEEEEeeC
Q 012007 423 DHDHEYHQKGDQRWTVYSGSL 443 (473)
Q Consensus 423 ~~~~~~~~~~~~~~~l~s~s~ 443 (473)
+ ++|+++.
T Consensus 343 ~-------------~lA~~~~ 350 (588)
T 2j04_A 343 Y-------------SIAIVYD 350 (588)
T ss_dssp S-------------EEEEEEE
T ss_pred C-------------EEEEEEe
Confidence 8 7887763
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=233.56 Aligned_cols=266 Identities=14% Similarity=0.112 Sum_probs=185.4
Q ss_pred EEEEeeCCCcEEEeeCC-----ccccccccCcccEEEEEEeCCCCEEEE-EeCCCeE-EEEeCCCCCeeeEEeecccccc
Q 012007 135 LLYTGSDSKNIRVWKNL-----KEFSGFKSNSGLVKAIIISGDSNKIFT-GHQDGKI-RIWKVSRKNASVHKRVGSLPTF 207 (473)
Q Consensus 135 ~l~tg~~dg~i~vwd~~-----~~~~~~~~h~~~V~~l~~s~~~~~l~s-~~~dg~i-~vwd~~~~~~~~~~~~~~~~~~ 207 (473)
.++++++ ..|++|+.. +.+.++.+|..+|..|.+.||..-|+. +-.+=.+ .++-+.-... ....
T Consensus 56 ~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd--------~~~~ 126 (356)
T 2w18_A 56 CIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSD--------DESE 126 (356)
T ss_dssp EEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC--------------C
T ss_pred EEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCC--------cccc
Confidence 6777886 599999854 456778889999999999997543332 2111111 1111110000 0000
Q ss_pred ceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe--CCCCEEEEEc-CCCeeeEEeecCCCceeEEE
Q 012007 208 KDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS--WDKTLKVWRI-SDCKCLESINAHDDAINSVV 284 (473)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s--~dg~v~vwd~-~~~~~~~~~~~~~~~v~~l~ 284 (473)
......-+|...|..+ ++++++.+++ .|+.|++|++ .+++.+..+..|...+..++
T Consensus 127 ------------------~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~ 185 (356)
T 2w18_A 127 ------------------KQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILT 185 (356)
T ss_dssp ------------------CEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEE
T ss_pred ------------------ccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEE
Confidence 0000111244444443 5666666544 5999999999 55888899999999999999
Q ss_pred EcC---CC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccC---CccEEEEEEccCCCEE------------EEeCCC
Q 012007 285 AGF---DS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKH---ENAVTALAVNQESAVV------------YCGSSD 345 (473)
Q Consensus 285 ~~~---~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~v~~l~~~~~~~~l------------~~~~~d 345 (473)
|++ ++ .|++++.|++|+|||++++. ....+.+| ...+.+++|+|++.++ ++|+.|
T Consensus 186 fs~~~g~~~~LaSgS~D~TIkIWDl~TGk------~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D 259 (356)
T 2w18_A 186 FAEVQGMQEALLGTTIMNNIVIWNLKTGQ------LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPV 259 (356)
T ss_dssp EEEEETSTTEEEEEETTSEEEEEETTTCC------EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CC
T ss_pred eeccCCCCceEEEecCCCcEEEEECCCCc------EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCC
Confidence 988 44 99999999999999997433 23444443 3467888999999876 567889
Q ss_pred CcEEEEecCCcccccce----eecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCcee-EEEEec
Q 012007 346 GLVNFWECEKHLSHGGV----LRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVK-CLAVEE 420 (473)
Q Consensus 346 g~i~iwd~~~~~~~~~~----~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~-~l~~~~ 420 (473)
++|++||..++...... ..+|.....+.+.++.++++|+.|++|+|||+.+ .+++.++.+|...+. .++|+|
T Consensus 260 ~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~t---Gk~l~tL~gH~~~vvs~vafSP 336 (356)
T 2w18_A 260 FQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLL---GQCTALLPPVSDQHWSFVKWSG 336 (356)
T ss_dssp EEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTT---CSEEEEECCC--CCCCEEEECS
T ss_pred cEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCC---CcEEEEecCCCCCeEEEEEECC
Confidence 99999999876544222 2467666777777799999999999999999998 678899999987655 689999
Q ss_pred CCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 421 DRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
+++ +|++|+.|++|+|||+
T Consensus 337 DG~-------------~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 337 TDS-------------HLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SSS-------------EEEEECTTSCEEEEEE
T ss_pred CCC-------------EEEEEECCCcEEEecC
Confidence 998 8999999999999996
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-28 Score=240.22 Aligned_cols=268 Identities=9% Similarity=0.116 Sum_probs=208.3
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCCc--ccc-----ccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEe
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNLK--EFS-----GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKR 200 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~~--~~~-----~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 200 (473)
++++++.++++++.|+.|++||... ... .+.+|.+.|.+++|+++++++++++.|+.|++||+.+++......
T Consensus 129 ~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~ 208 (433)
T 3bws_A 129 RFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVD 208 (433)
T ss_dssp EESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE
T ss_pred EEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEc
Confidence 3444567888888899999999762 222 455789999999999999999999999999999998876543332
Q ss_pred eccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEEeecCCCc
Q 012007 201 VGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAHDDA 279 (473)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~ 279 (473)
.|...+.+++|+|+++++++++ .|+.|++||+++++.+..+..+ ..
T Consensus 209 --------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~ 255 (433)
T 3bws_A 209 --------------------------------LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GL 255 (433)
T ss_dssp --------------------------------CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SE
T ss_pred --------------------------------CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CC
Confidence 2778899999999999886554 7999999999999998888764 45
Q ss_pred eeEEEEcCCC-EEEEEe--------CCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCE-EEEeCCCCcEE
Q 012007 280 INSVVAGFDS-LVFTGS--------ADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAV-VYCGSSDGLVN 349 (473)
Q Consensus 280 v~~l~~~~~~-~l~s~~--------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~~~dg~i~ 349 (473)
+.+++++|++ .+++++ .||.|++||++.+. . .....+...+.+++|+|+++. +++++.|+.|+
T Consensus 256 ~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~------~-~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~ 328 (433)
T 3bws_A 256 PRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK------L-IDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIE 328 (433)
T ss_dssp EEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE------E-EEEEEEEECEEEEEECSSTTEEEEEETTTTEEE
T ss_pred ceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc------E-EeeccCCCCcceEEECCCCCEEEEEecCCCEEE
Confidence 8999999998 777777 48899999987431 1 122345568899999999975 46668999999
Q ss_pred EEecCCcccccceeecCcceE--EEEEecCCEEEEEeC---------------CCcEEEEecCCCCceeEEEEecCCCCc
Q 012007 350 FWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSA---------------DRNICLWRREESGAHSCLAVLTGHTGP 412 (473)
Q Consensus 350 iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~~---------------dg~i~iwd~~~~~~~~~~~~~~~h~~~ 412 (473)
+||+++........ +...+ .++++++++|++++. ||.|++||+.+ .+.+..+.. ...
T Consensus 329 v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~---~~~~~~~~~-~~~ 402 (433)
T 3bws_A 329 VYDLKEKKVQKSIP--VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT---DTVKEFWEA-GNQ 402 (433)
T ss_dssp EEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT---TEEEEEEEC-SSS
T ss_pred EEECCCCcEEEEec--CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC---CcEEEEecC-CCC
Confidence 99998755443222 33444 455567888888876 57999999988 456666665 457
Q ss_pred eeEEEEecCCCCCcccccCCCccEEEEEee-CCCcEEEEEcCC
Q 012007 413 VKCLAVEEDRDHDHEYHQKGDQRWTVYSGS-LDKSVKVWRVSE 454 (473)
Q Consensus 413 V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s-~Dg~v~iW~i~~ 454 (473)
+.+++|+|+++ +|++++ .|+.|++|++..
T Consensus 403 ~~~~~~s~dg~-------------~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 403 PTGLDVSPDNR-------------YLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEEECTTSC-------------EEEEEETTTTEEEEEEETT
T ss_pred CceEEEcCCCC-------------EEEEEECCCCeEEEEEecC
Confidence 89999999998 677665 599999999864
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-28 Score=234.90 Aligned_cols=276 Identities=17% Similarity=0.208 Sum_probs=206.1
Q ss_pred CCcEEEeeC--CccccccccCcccEEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCc
Q 012007 142 SKNIRVWKN--LKEFSGFKSNSGLVKAIIISG-DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPK 218 (473)
Q Consensus 142 dg~i~vwd~--~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (473)
++.+++|+. .+....+.+|.+.|++++|+| ++++|++|+.||.|++||+.+..............
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~------------ 89 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCS------------ 89 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEE------------
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccc------------
Confidence 345677754 355667888999999999999 99999999999999999999876543332110000
Q ss_pred ceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC----EEEE
Q 012007 219 NYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS----LVFT 293 (473)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~----~l~s 293 (473)
.......+|...|.+++|+| ++.+|++++.||.|++||+.+++.+..+. +...+.++.+.+.+ ++++
T Consensus 90 -------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 161 (408)
T 4a11_B 90 -------IGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAV 161 (408)
T ss_dssp -------ECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEE
T ss_pred -------ccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEE
Confidence 00000013889999999999 78899999999999999999999988887 67789999998753 8999
Q ss_pred EeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCC-EEEEeCCCCcEEEEecCCccccccee---------
Q 012007 294 GSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESA-VVYCGSSDGLVNFWECEKHLSHGGVL--------- 363 (473)
Q Consensus 294 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~--------- 363 (473)
++.||.|++||++... ....+..|...|.+++|+|++. +|++++.||.|++||+++.......+
T Consensus 162 ~~~~~~v~~~d~~~~~------~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 235 (408)
T 4a11_B 162 GTRGPKVQLCDLKSGS------CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQ 235 (408)
T ss_dssp EESSSSEEEEESSSSC------CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCC
T ss_pred EcCCCeEEEEeCCCcc------eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccce
Confidence 9999999999997432 3456678999999999999998 68999999999999997654332222
Q ss_pred ------ecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCC-----CCceeEEEEecCCCCCccccc
Q 012007 364 ------RGHKMAVLCLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLTGH-----TGPVKCLAVEEDRDHDHEYHQ 430 (473)
Q Consensus 364 ------~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h-----~~~V~~l~~~~~~~~~~~~~~ 430 (473)
.+|...+.++.+ ++++|++++.||.|++||+.++.. ...+.++ ...+..........
T Consensus 236 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~------- 305 (408)
T 4a11_B 236 AVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN---TLVNYGKVCNNSKKGLKFTVSCGCSS------- 305 (408)
T ss_dssp CTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB---CCCCCCCCCCCCSSCCCCEECCSSSS-------
T ss_pred eeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc---ceeccccccccccccceeEEecCCCc-------
Confidence 567778877665 688999999999999999998432 2222221 11112122222222
Q ss_pred CCCccEEEEEeeCCCcEEEEEcCCCCCCc
Q 012007 431 KGDQRWTVYSGSLDKSVKVWRVSEHAPDL 459 (473)
Q Consensus 431 ~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~ 459 (473)
.+++++.|+.|++||+..+....
T Consensus 306 ------~~~~~~~~~~i~v~d~~~~~~~~ 328 (408)
T 4a11_B 306 ------EFVFVPYGSTIAVYTVYSGEQIT 328 (408)
T ss_dssp ------CEEEEEETTEEEEEETTTCCEEE
T ss_pred ------eEEEEecCCEEEEEECcCCccee
Confidence 47777889999999998876543
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-27 Score=221.37 Aligned_cols=236 Identities=22% Similarity=0.311 Sum_probs=193.2
Q ss_pred eeecccEEEEEe--cCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCe
Q 012007 120 VRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNA 195 (473)
Q Consensus 120 ~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 195 (473)
.+|...|.++.+ ++++||+|+.||+|++||.. +.+..+.+|...+.++.+. +..|++++.++.+++|+......
T Consensus 64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~ 141 (318)
T 4ggc_A 64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEH 141 (318)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC
T ss_pred cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecC--CCEEEEEecCCceEeeecCCCce
Confidence 467788998876 48899999999999999975 5567788999988887765 55999999999999999887654
Q ss_pred eeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee----eE
Q 012007 196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC----LE 271 (473)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~----~~ 271 (473)
..... .+|...+.++.+.+++++|++++.|+.|++||+++++. ..
T Consensus 142 ~~~~~-------------------------------~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 190 (318)
T 4ggc_A 142 HVATL-------------------------------SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ 190 (318)
T ss_dssp EEEEE-------------------------------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSE
T ss_pred eEEEE-------------------------------cCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccccccee
Confidence 33222 24899999999999999999999999999999987653 34
Q ss_pred EeecCCCceeEEEEcCCC----EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe--CCC
Q 012007 272 SINAHDDAINSVVAGFDS----LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG--SSD 345 (473)
Q Consensus 272 ~~~~~~~~v~~l~~~~~~----~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~~d 345 (473)
....+...|.++.+.+.+ .+++++.++.|++||.+... ......+...+..+.|++++..++++ +.|
T Consensus 191 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d 263 (318)
T 4ggc_A 191 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-------CLSAVDAHSQVCSILWSPHYKELISGHGFAQ 263 (318)
T ss_dssp EECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC-------EEEEEECSSCEEEEEEETTTTEEEEEECTTT
T ss_pred eecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc-------ccccccceeeeeeeeecccccceEEEEEcCC
Confidence 556788899999998876 34567889999999986432 23344567789999999999887764 479
Q ss_pred CcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCC
Q 012007 346 GLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~ 396 (473)
+.|++||++++.. ...+.+|...|.++++ ++++|++|+.||+|+|||+..
T Consensus 264 ~~i~iwd~~~~~~-~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 264 NQLVIWKYPTMAK-VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp CCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred CEEEEEECCCCcE-EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 9999999998654 4577899999987765 699999999999999999976
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-26 Score=221.37 Aligned_cols=297 Identities=11% Similarity=0.127 Sum_probs=211.6
Q ss_pred cceeeeeeecccEEEEEe--cCCEE-EEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEe-CCCeEEE
Q 012007 114 GLIGSIVRKEGHIYSLAA--SGDLL-YTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGH-QDGKIRI 187 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~--~g~~l-~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~v 187 (473)
..+..+..|. .+.++++ +|++| ++++.|+.|++||.. +.+..+..+ ..|.+++|+|++++|+.++ .++.|++
T Consensus 23 ~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v 100 (391)
T 1l0q_A 23 KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSV 100 (391)
T ss_dssp EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC-CCccceEECCCCCEEEEEECCCCEEEE
Confidence 3445555554 4677665 57766 677789999999975 334444444 4899999999999886554 6799999
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEE-EEEeCCCCEEEEEcCC
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLL-YSGSWDKTLKVWRISD 266 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~s~s~dg~v~vwd~~~ 266 (473)
||+.+++...... +...+.+++|+|++++| ++++.|+.|++||+.+
T Consensus 101 ~d~~~~~~~~~~~---------------------------------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 147 (391)
T 1l0q_A 101 IDTTSNTVAGTVK---------------------------------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT 147 (391)
T ss_dssp EETTTTEEEEEEE---------------------------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred EECCCCeEEEEEe---------------------------------CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 9999876543322 45578999999999977 6788899999999999
Q ss_pred CeeeEEeecCCCceeEEEEcCCC-EE-EEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC-
Q 012007 267 CKCLESINAHDDAINSVVAGFDS-LV-FTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS- 343 (473)
Q Consensus 267 ~~~~~~~~~~~~~v~~l~~~~~~-~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~- 343 (473)
++.+..+..+. .+.+++|++++ .+ ++++.++.|++||++... ... ...+...+.+++|+|++++|++++
T Consensus 148 ~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~------~~~-~~~~~~~~~~~~~~~~g~~l~~~~~ 219 (391)
T 1l0q_A 148 KAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS------VID-TVKVEAAPSGIAVNPEGTKAYVTNV 219 (391)
T ss_dssp TEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE------EEE-EEECSSEEEEEEECTTSSEEEEEEE
T ss_pred CcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCe------EEE-EEecCCCccceEECCCCCEEEEEec
Confidence 99998888654 56899999998 44 677889999999997421 122 223566899999999999998887
Q ss_pred --CCCcEEEEecCCcccccceeecCcc-eEEEEEecCCEE-EEEeCCCcEEEEecCCCCceeEEEEecCCCCcee---EE
Q 012007 344 --SDGLVNFWECEKHLSHGGVLRGHKM-AVLCLAAAGNLV-FSGSADRNICLWRREESGAHSCLAVLTGHTGPVK---CL 416 (473)
Q Consensus 344 --~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~---~l 416 (473)
.++.|++||++++... ..+..|.. ...++++++++| ++++.|+.|++||+.+ .+.+..+..|..+.. .+
T Consensus 220 ~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~---~~~~~~~~~~~~~~~~~~~~ 295 (391)
T 1l0q_A 220 DKYFNTVSMIDTGTNKIT-ARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT---NTITATMAVGKNPYASGQFI 295 (391)
T ss_dssp CSSCCEEEEEETTTTEEE-EEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT---TEEEEEEECSSSEECCSSCE
T ss_pred CcCCCcEEEEECCCCeEE-EEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCC---CcEEEEEECCcCCCccceee
Confidence 6899999999876543 33444443 234566778877 6778899999999998 466666666655432 24
Q ss_pred EEecCCCCCc--ccccCC-------CccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 417 AVEEDRDHDH--EYHQKG-------DQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 417 ~~~~~~~~~~--~~~~~~-------~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
.+.|++.... .+.... .....|...+.|..+++|++..+..
T Consensus 296 ~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 296 GSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp EECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred ecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 4444332110 000000 0113577888899999999987653
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.7e-27 Score=219.78 Aligned_cols=212 Identities=17% Similarity=0.267 Sum_probs=176.2
Q ss_pred eeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC----eeeEEeecCCCceeEEEEcC---CCEEEEEeCCCcEEEEe
Q 012007 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC----KCLESINAHDDAINSVVAGF---DSLVFTGSADGTVKVWR 304 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~----~~~~~~~~~~~~v~~l~~~~---~~~l~s~~~dg~i~vwd 304 (473)
.+|.+.|.+++|+|++++|++|+.||.|++||+.++ +.+..+..|...|.+++|++ ..+|++++.||.|++||
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd 87 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence 369999999999999999999999999999999876 56777889999999999998 34999999999999999
Q ss_pred CcccCCC---cceeeeeeeccCCccEEEEEEccC--CCEEEEeCCCCcEEEEecCCccccccee------------ecCc
Q 012007 305 RELQGKG---TKHCLAQVLLKHENAVTALAVNQE--SAVVYCGSSDGLVNFWECEKHLSHGGVL------------RGHK 367 (473)
Q Consensus 305 ~~~~~~~---~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------~~~~ 367 (473)
++..... ........+..|...|.+++|+|+ +.+|++++.||.|++||+++........ ..|.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (351)
T 3f3f_A 88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHL 167 (351)
T ss_dssp ECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCS
T ss_pred cCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcc
Confidence 9754321 112445667789999999999999 9999999999999999998754432221 1466
Q ss_pred ceEEEEEe--c---CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCC----CCCcccccCCCccEEE
Q 012007 368 MAVLCLAA--A---GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDR----DHDHEYHQKGDQRWTV 438 (473)
Q Consensus 368 ~~v~~~~~--~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~----~~~~~~~~~~~~~~~l 438 (473)
..+.++.+ + +.+|++++.|+.+.+|+... .....+..+.+|...|++++|+|++ . +|
T Consensus 168 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~-------------~l 233 (351)
T 3f3f_A 168 QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD-GKLHVAAKLPGHKSLIRSISWAPSIGRWYQ-------------LI 233 (351)
T ss_dssp CCCEEEEECCCSSSCCEEEEEETTEEEEEEECTT-SCEEEEEECCCCCSCEEEEEECCCSSCSSE-------------EE
T ss_pred cceeEEEeccCCCCCcEEEEecCCCcEEEEccCC-CceeeeeecCCCCcceeEEEECCCCCCcce-------------EE
Confidence 66666654 3 88999999999997777766 3445688889999999999999997 4 89
Q ss_pred EEeeCCCcEEEEEcCCCCC
Q 012007 439 YSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 439 ~s~s~Dg~v~iW~i~~~~~ 457 (473)
++|+.||.|++||+..+..
T Consensus 234 ~s~~~dg~i~iwd~~~~~~ 252 (351)
T 3f3f_A 234 ATGCKDGRIRIFKITEKLS 252 (351)
T ss_dssp EEEETTSCEEEEEEEECC-
T ss_pred EEEcCCCeEEEEeCCCCcC
Confidence 9999999999999987644
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-28 Score=232.01 Aligned_cols=228 Identities=11% Similarity=0.102 Sum_probs=164.7
Q ss_pred EEecCCEEEEeeCCCcEEEeeCCc-------cccccccCcccEEEEEEeC--------CCCEEEEEeCCCeEEEEeCCCC
Q 012007 129 LAASGDLLYTGSDSKNIRVWKNLK-------EFSGFKSNSGLVKAIIISG--------DSNKIFTGHQDGKIRIWKVSRK 193 (473)
Q Consensus 129 ~~~~g~~l~tg~~dg~i~vwd~~~-------~~~~~~~h~~~V~~l~~s~--------~~~~l~s~~~dg~i~vwd~~~~ 193 (473)
+.+++.+|++|+.|++|+|||... .+..+.+|.+.|.+|+|+| |+++||+|+.|++|+|||+.++
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~ 176 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE 176 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence 345577999999999999998542 2456889999999999998 7899999999999999999766
Q ss_pred CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCC-CEEEEEeCCCCEEEEEcCCCeeeEE
Q 012007 194 NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRISDCKCLES 272 (473)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~ 272 (473)
...... .+|...|.+++|+|++ .+|++|+.|++|++||+++++....
T Consensus 177 ~~~~~~--------------------------------~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~ 224 (393)
T 4gq1_A 177 GPILAG--------------------------------YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEE 224 (393)
T ss_dssp EEEEEE--------------------------------EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----
T ss_pred ceeeee--------------------------------cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccc
Confidence 533222 2488999999999987 4899999999999999988764332
Q ss_pred e-------------------------ecCCCceeEEEEc-CCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCc
Q 012007 273 I-------------------------NAHDDAINSVVAG-FDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHEN 325 (473)
Q Consensus 273 ~-------------------------~~~~~~v~~l~~~-~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 325 (473)
. .+|...+.++.|. +++ .+++++.|+.+++||+...... ..+..|..
T Consensus 225 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~------~~l~~~~~ 298 (393)
T 4gq1_A 225 NSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDY------NEISDSTM 298 (393)
T ss_dssp ------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------
T ss_pred ccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCC------ceEeeecC
Confidence 2 3567788889876 565 8999999999999998743321 11112222
Q ss_pred cE------------------EEEEEcc--CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEE--EecCCEEEEE
Q 012007 326 AV------------------TALAVNQ--ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCL--AAAGNLVFSG 383 (473)
Q Consensus 326 ~v------------------~~l~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~ 383 (473)
.+ ....++| ++.++++|+.||.|++||+.++... ....+|...|.++ +++|++||++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~-~~~~~~~~~V~svafspdG~~LA~a 377 (393)
T 4gq1_A 299 KLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN-SIPIQLGMPIVDFCWHQDGSHLAIA 377 (393)
T ss_dssp -----CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC-EEEEECSSCEEEEEECTTSSEEEEE
T ss_pred ccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE-EEecCCCCcEEEEEEcCCCCEEEEE
Confidence 22 2233443 4456788899999999999886554 3455677777655 5679999999
Q ss_pred eCCCcEEEEecCC
Q 012007 384 SADRNICLWRREE 396 (473)
Q Consensus 384 ~~dg~i~iwd~~~ 396 (473)
+.|| +.+|++..
T Consensus 378 s~~G-v~lvrL~g 389 (393)
T 4gq1_A 378 TEGS-VLLTRLMG 389 (393)
T ss_dssp ESSE-EEEEEEGG
T ss_pred eCCC-eEEEEEeC
Confidence 9665 76776643
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-26 Score=226.27 Aligned_cols=283 Identities=11% Similarity=0.109 Sum_probs=216.3
Q ss_pred EEEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC--CCCCeeeEEee
Q 012007 126 IYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV--SRKNASVHKRV 201 (473)
Q Consensus 126 V~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~--~~~~~~~~~~~ 201 (473)
+..+++++.++++++.|++|.+||.. +.+..+..+.. +..++|+|||++|++++.|+.|++||+ .+.+......
T Consensus 142 ~~~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~- 219 (543)
T 1nir_A 142 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK- 219 (543)
T ss_dssp CSCCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-
T ss_pred ccccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-
Confidence 44567788899999999999999965 44555653333 889999999999999999999999999 5554332222
Q ss_pred ccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC----CCCEEEEEeC-CCCEEEEEcCCCeeeEEeecC
Q 012007 202 GSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA----EQGLLYSGSW-DKTLKVWRISDCKCLESINAH 276 (473)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~----~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~ 276 (473)
+...+..++|+| +|++|++++. +++|.+||..+++++..+..+
T Consensus 220 --------------------------------~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~ 267 (543)
T 1nir_A 220 --------------------------------IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR 267 (543)
T ss_dssp --------------------------------CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECC
T ss_pred --------------------------------cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeeccc
Confidence 445678999999 9999999984 899999999999999888652
Q ss_pred -----------CCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe-
Q 012007 277 -----------DDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG- 342 (473)
Q Consensus 277 -----------~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~- 342 (473)
...+..+.+++++ ++++...++.|.+||...... +......+...+..++|+|++++|+++
T Consensus 268 g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~-----l~~~~i~~~~~~~~~~~spdg~~l~va~ 342 (543)
T 1nir_A 268 GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN-----LTVTSIGAAPFLHDGGWDSSHRYFMTAA 342 (543)
T ss_dssp EECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSS-----CEEEEEECCSSCCCEEECTTSCEEEEEE
T ss_pred CcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCc-----ceeEEeccCcCccCceECCCCCEEEEEe
Confidence 2268899999876 677888899999999874322 111122355668889999999977655
Q ss_pred CCCCcEEEEecCCcccccceee---cCcceEEEE-Eec-CCEEEEEe-CCCcEEEEecCCCC----ceeEEEEecCCCCc
Q 012007 343 SSDGLVNFWECEKHLSHGGVLR---GHKMAVLCL-AAA-GNLVFSGS-ADRNICLWRREESG----AHSCLAVLTGHTGP 412 (473)
Q Consensus 343 ~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~~-~~~-~~~l~s~~-~dg~i~iwd~~~~~----~~~~~~~~~~h~~~ 412 (473)
..+++|.+||..++........ .|......+ .++ +.+++++. .|++|.+||+.+.+ .+++++.+.+|.+.
T Consensus 343 ~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~ 422 (543)
T 1nir_A 343 NNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG 422 (543)
T ss_dssp GGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC
T ss_pred cCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC
Confidence 5688999999998654432221 254333333 566 66667765 68999999998732 26889999999989
Q ss_pred eeEEEEecCCCCCcccccCCCccEEEEEee-------CCCcEEEEEcCCCCCCcc
Q 012007 413 VKCLAVEEDRDHDHEYHQKGDQRWTVYSGS-------LDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 413 V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s-------~Dg~v~iW~i~~~~~~~~ 460 (473)
+..++++|+++ .|++++ .+++|.|||+.+.+...+
T Consensus 423 ~~~v~~~pdg~-------------~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~ 464 (543)
T 1nir_A 423 SLFIKTHPKSS-------------HLYVDTTFNPDARISQSVAVFDLKNLDAKYQ 464 (543)
T ss_dssp CCCEECCTTCC-------------EEEECCTTCSSHHHHTCEEEEETTCTTSCCE
T ss_pred ceEEEcCCCCC-------------cEEEecCCCCCcccCceEEEEECCCCCCCeE
Confidence 99999999999 788876 378999999998876533
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-26 Score=222.56 Aligned_cols=242 Identities=10% Similarity=0.074 Sum_probs=187.4
Q ss_pred ccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE
Q 012007 162 GLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL 241 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 241 (473)
..+.+++|+|++.++++++.|+.|++||+.+++......... ..+|...|.++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~---------------------------~~~~~~~v~~~ 175 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEK---------------------------YKKKLGFVETI 175 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHH---------------------------HHTTCCEEEEE
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCccc---------------------------ccccCCceeEE
Confidence 456699999987788888889999999999887543222111 11388899999
Q ss_pred EEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EE-EEEeCCCcEEEEeCcccCCCcceeeeee
Q 012007 242 SLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LV-FTGSADGTVKVWRRELQGKGTKHCLAQV 319 (473)
Q Consensus 242 ~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 319 (473)
+|++++.++++++.|+.|++||+++++.+..+..|...+.+++|++++ .+ ++++.|+.|++||++.+. ....
T Consensus 176 ~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~------~~~~ 249 (433)
T 3bws_A 176 SIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL------EIRK 249 (433)
T ss_dssp EEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE------EEEE
T ss_pred EEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc------EEEE
Confidence 999999999999999999999999999999999999999999999987 45 566689999999987322 2222
Q ss_pred eccCCccEEEEEEccCCCEEEEeC--------CCCcEEEEecCCcccccceeecCcceE--EEEEecCCE-EEEEeCCCc
Q 012007 320 LLKHENAVTALAVNQESAVVYCGS--------SDGLVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNL-VFSGSADRN 388 (473)
Q Consensus 320 ~~~~~~~v~~l~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~-l~s~~~dg~ 388 (473)
+. +...+.+++|+|++++|++++ .||.|++||++++...... .|...+ .+++++++. +++++.|+.
T Consensus 250 ~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~ 326 (433)
T 3bws_A 250 TD-KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI--GPPGNKRHIVSGNTENKIYVSDMCCSK 326 (433)
T ss_dssp CC-CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE--EEEECEEEEEECSSTTEEEEEETTTTE
T ss_pred ec-CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec--cCCCCcceEEECCCCCEEEEEecCCCE
Confidence 32 345699999999999998887 5889999999876443222 333344 445566764 566689999
Q ss_pred EEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeC---------------CCcEEEEEcC
Q 012007 389 ICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSL---------------DKSVKVWRVS 453 (473)
Q Consensus 389 i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~---------------Dg~v~iW~i~ 453 (473)
|++||+.+ .+.+..+. +...+.+++|+|++. +|++++. ||.|++||+.
T Consensus 327 v~v~d~~~---~~~~~~~~-~~~~~~~~~~s~dg~-------------~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~ 389 (433)
T 3bws_A 327 IEVYDLKE---KKVQKSIP-VFDKPNTIALSPDGK-------------YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT 389 (433)
T ss_dssp EEEEETTT---TEEEEEEE-CSSSEEEEEECTTSS-------------EEEEEECCCCCTTTCTTSCCSSCCEEEEEETT
T ss_pred EEEEECCC---CcEEEEec-CCCCCCeEEEcCCCC-------------EEEEEecCCCccccccccccccceEEEEEECC
Confidence 99999987 35555554 667899999999998 6666665 6799999998
Q ss_pred CCC
Q 012007 454 EHA 456 (473)
Q Consensus 454 ~~~ 456 (473)
+++
T Consensus 390 ~~~ 392 (433)
T 3bws_A 390 TDT 392 (433)
T ss_dssp TTE
T ss_pred CCc
Confidence 764
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-25 Score=214.54 Aligned_cols=244 Identities=14% Similarity=-0.003 Sum_probs=188.9
Q ss_pred CCEEEEeeCC------CcEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCCC---eEEEEeCCCCCeeeEEeec
Q 012007 133 GDLLYTGSDS------KNIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG---KIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 133 g~~l~tg~~d------g~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~ 202 (473)
+..++.++.+ +.|++||.. .....+..|...|.+++|+|||++|++++.++ .|++||+.+++.....
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~--- 219 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA--- 219 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE---
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEee---
Confidence 5666666554 799999976 44667778999999999999999999999885 9999999987643211
Q ss_pred cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEE-EEeCCCC--EEEEEcCCCeeeEEeecCCCc
Q 012007 203 SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLY-SGSWDKT--LKVWRISDCKCLESINAHDDA 279 (473)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~s~dg~--v~vwd~~~~~~~~~~~~~~~~ 279 (473)
.|...+.+++|+|+|++|+ +++.|+. |++||+.+++. ..+..|...
T Consensus 220 ------------------------------~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~ 268 (415)
T 2hqs_A 220 ------------------------------SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSN 268 (415)
T ss_dssp ------------------------------CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSC
T ss_pred ------------------------------cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCc
Confidence 2677899999999999887 6666665 99999988776 566778889
Q ss_pred eeEEEEcCCC-EEEEEeC-CC--cEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC---CcEEEEe
Q 012007 280 INSVVAGFDS-LVFTGSA-DG--TVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD---GLVNFWE 352 (473)
Q Consensus 280 v~~l~~~~~~-~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---g~i~iwd 352 (473)
+.++.|+|++ .|++++. ++ .|.+||+..+. ...+..+...+.+++|+|+|++|++++.+ ..|.+||
T Consensus 269 ~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~-------~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d 341 (415)
T 2hqs_A 269 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQD 341 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-------CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEE
T ss_pred ccceEECCCCCEEEEEECCCCCcEEEEEECCCCC-------EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEE
Confidence 9999999998 5666665 45 56667775321 12334566788999999999999888764 5899999
Q ss_pred cCCcccccceeecC-cceEEEEEecCCEEEEEeCCC---cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 353 CEKHLSHGGVLRGH-KMAVLCLAAAGNLVFSGSADR---NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 353 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
+.++... .+..+ .....+++++|++|+.++.++ .|++||+.. .....+.+|.+.|.+++|+|...
T Consensus 342 ~~~~~~~--~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g----~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 342 LATGGVQ--VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG----RFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp TTTCCEE--ECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS----CCEEECCCSSSEEEEEEECCCCC
T ss_pred CCCCCEE--EecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC----CcEEEeeCCCCCCcCCccccccc
Confidence 9875442 23333 344466778899999988877 799999875 44677889999999999999764
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.8e-25 Score=211.64 Aligned_cols=261 Identities=11% Similarity=0.036 Sum_probs=194.5
Q ss_pred CEEEEee----CCC----cEEEeeC--Cc--cc--cccccCcccEEEEEEeC--------------CCCEEEEEeCC---
Q 012007 134 DLLYTGS----DSK----NIRVWKN--LK--EF--SGFKSNSGLVKAIIISG--------------DSNKIFTGHQD--- 182 (473)
Q Consensus 134 ~~l~tg~----~dg----~i~vwd~--~~--~~--~~~~~h~~~V~~l~~s~--------------~~~~l~s~~~d--- 182 (473)
+++++|+ .|| .|+|||+ .. .+ ..+.+|...+..+++.+ .+..++.++.+
T Consensus 76 ~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~ 155 (415)
T 2hqs_A 76 DAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGG 155 (415)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSS
T ss_pred CEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCC
Confidence 4666775 467 8999998 53 23 34778888888777764 15566666654
Q ss_pred ---CeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCC--
Q 012007 183 ---GKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDK-- 257 (473)
Q Consensus 183 ---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg-- 257 (473)
+.|++||+....... +.+|...+.+++|+|+|++|++++.++
T Consensus 156 ~~~~~i~i~d~~g~~~~~---------------------------------l~~~~~~v~~~~~Spdg~~la~~s~~~~~ 202 (415)
T 2hqs_A 156 QFPYELRVSDYDGYNQFV---------------------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGR 202 (415)
T ss_dssp SCCEEEEEEETTSCSCEE---------------------------------EEEESSCEEEEEECTTSSEEEEEECTTSS
T ss_pred CccceEEEEcCCCCCCEE---------------------------------EeCCCCcceeeEEcCCCCEEEEEEecCCC
Confidence 799999997543221 113888999999999999999999885
Q ss_pred -CEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEE-EEeCCCc--EEEEeCcccCCCcceeeeeeeccCCccEEEEEE
Q 012007 258 -TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF-TGSADGT--VKVWRRELQGKGTKHCLAQVLLKHENAVTALAV 332 (473)
Q Consensus 258 -~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~-s~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 332 (473)
.|++||+.+++.. .+..|...+.+++|+|++ .|+ +++.++. |++||+..+. ...+..|...+.+++|
T Consensus 203 ~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-------~~~l~~~~~~~~~~~~ 274 (415)
T 2hqs_A 203 SALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-------IRQVTDGRSNNTEPTW 274 (415)
T ss_dssp CEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-------EEECCCCSSCEEEEEE
T ss_pred cEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-------EEeCcCCCCcccceEE
Confidence 8999999998875 466688899999999998 455 6666665 8999986422 2445677889999999
Q ss_pred ccCCCEEEEeCC-CC--cEEEEecCCcccccceeecCcceE--EEEEecCCEEEEEeCC---CcEEEEecCCCCceeEEE
Q 012007 333 NQESAVVYCGSS-DG--LVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSAD---RNICLWRREESGAHSCLA 404 (473)
Q Consensus 333 ~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~ 404 (473)
+|+|++|++++. ++ .|.+||+.++... .+..+...+ .+++++|++|+.++.+ ..|++||+.++ .. .
T Consensus 275 spdg~~l~~~s~~~g~~~i~~~d~~~~~~~--~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~---~~-~ 348 (415)
T 2hqs_A 275 FPDSQNLAFTSDQAGRPQVYKVNINGGAPQ--RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG---GV-Q 348 (415)
T ss_dssp CTTSSEEEEEECTTSSCEEEEEETTSSCCE--ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC---CE-E
T ss_pred CCCCCEEEEEECCCCCcEEEEEECCCCCEE--EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC---CE-E
Confidence 999998887775 45 6777788765432 233344444 5667789999988764 58999999873 22 3
Q ss_pred EecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCC---cEEEEEcCCC
Q 012007 405 VLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDK---SVKVWRVSEH 455 (473)
Q Consensus 405 ~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg---~v~iW~i~~~ 455 (473)
.+..|. .+.+++|+|+++ +|++++.|+ .|++|++...
T Consensus 349 ~l~~~~-~~~~~~~spdg~-------------~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 349 VLSSTF-LDETPSLAPNGT-------------MVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp ECCCSS-SCEEEEECTTSS-------------EEEEEEEETTEEEEEEEETTSC
T ss_pred EecCCC-CcCCeEEcCCCC-------------EEEEEEcCCCccEEEEEECCCC
Confidence 455554 899999999998 788877776 7999998744
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-25 Score=202.19 Aligned_cols=197 Identities=10% Similarity=0.041 Sum_probs=147.5
Q ss_pred eeecccEEEEEecCCEEEEee--CCCcEEEeeCC---ccccccccCcccEEEEEEeC---CCCEEEEEeCCCeEEEEeCC
Q 012007 120 VRKEGHIYSLAASGDLLYTGS--DSKNIRVWKNL---KEFSGFKSNSGLVKAIIISG---DSNKIFTGHQDGKIRIWKVS 191 (473)
Q Consensus 120 ~~h~~~V~~~~~~g~~l~tg~--~dg~i~vwd~~---~~~~~~~~h~~~V~~l~~s~---~~~~l~s~~~dg~i~vwd~~ 191 (473)
.+|...|.++ .+|+++.+++ .|+.|++|++. +.+..+.+|...++.++|++ ++.+|++|+.|++|+|||+.
T Consensus 133 ~g~~~~v~~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~ 211 (356)
T 2w18_A 133 SGNIKAVLGL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK 211 (356)
T ss_dssp EEEEEEEEEE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT
T ss_pred CCCeEEEEec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC
Confidence 3455566665 3566666644 59999999973 44667778999999999999 77999999999999999999
Q ss_pred CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEE------------EEEeCCCCE
Q 012007 192 RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLL------------YSGSWDKTL 259 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l------------~s~s~dg~v 259 (473)
+++......... .+...+.+++|+|++.++ ++|+.|++|
T Consensus 212 TGk~l~tL~g~~-----------------------------~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tI 262 (356)
T 2w18_A 212 TGQLLKKMHIDD-----------------------------SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQL 262 (356)
T ss_dssp TCCEEEEEECCC--------------------------------CCCEEEEEEETTEEEEEEC------------CCEEE
T ss_pred CCcEEEEEcCCC-----------------------------cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEE
Confidence 998665543110 023467888999998876 668899999
Q ss_pred EEEEcCCCeeeEEe-----ecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEE-EEEEc
Q 012007 260 KVWRISDCKCLESI-----NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVT-ALAVN 333 (473)
Q Consensus 260 ~vwd~~~~~~~~~~-----~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~ 333 (473)
++||..+++.+..+ .+|...+.+..++ ..++++++.|++|+|||+..+. ....+.+|...+. .++|+
T Consensus 263 klWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s-g~~lASgS~DgTIkIWDl~tGk------~l~tL~gH~~~vvs~vafS 335 (356)
T 2w18_A 263 IVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK-DHCAAAILTSGTIAIWDLLLGQ------CTALLPPVSDQHWSFVKWS 335 (356)
T ss_dssp EEEETTTTEEEEEEEECCCTTCCCCEEEEEEE-TTEEEEEETTSCEEEEETTTCS------EEEEECCC--CCCCEEEEC
T ss_pred EEEECCCCEEEEEEEeeccCCCcceeEccccC-CCEEEEEcCCCcEEEEECCCCc------EEEEecCCCCCeEEEEEEC
Confidence 99999999988765 3565555444443 3488999999999999997432 4556777877655 68999
Q ss_pred cCCCEEEEeCCCCcEEEEec
Q 012007 334 QESAVVYCGSSDGLVNFWEC 353 (473)
Q Consensus 334 ~~~~~l~~~~~dg~i~iwd~ 353 (473)
|+|++|++|+.|++|+|||+
T Consensus 336 PDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 336 GTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SSSSEEEEECTTSCEEEEEE
T ss_pred CCCCEEEEEECCCcEEEecC
Confidence 99999999999999999985
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-24 Score=200.00 Aligned_cols=272 Identities=12% Similarity=0.229 Sum_probs=186.5
Q ss_pred EEEEeeCCCcEEEeeCC--cc--ccccccCcccEEEEEEeCCCCEEEEEeCC-CeEEEEeCC--CCCeeeEEeecccccc
Q 012007 135 LLYTGSDSKNIRVWKNL--KE--FSGFKSNSGLVKAIIISGDSNKIFTGHQD-GKIRIWKVS--RKNASVHKRVGSLPTF 207 (473)
Q Consensus 135 ~l~tg~~dg~i~vwd~~--~~--~~~~~~h~~~V~~l~~s~~~~~l~s~~~d-g~i~vwd~~--~~~~~~~~~~~~~~~~ 207 (473)
++++++.|+.|++|+.. .. ......|...+.+++|+|++++|++++.+ +.|++|++. ++........
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~------ 80 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES------ 80 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE------
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccc------
Confidence 34454779999999864 21 22223477789999999999999998887 999999997 4443222111
Q ss_pred ceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC-CCCEEEEEcC---CCeeeEEeecCCCceeEE
Q 012007 208 KDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRIS---DCKCLESINAHDDAINSV 283 (473)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg~v~vwd~~---~~~~~~~~~~~~~~v~~l 283 (473)
.....+.+++|+|++++|++++. ++.|.+||+. ..+.+..+..+ ..+.++
T Consensus 81 -------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~ 134 (343)
T 1ri6_A 81 -------------------------ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSA 134 (343)
T ss_dssp -------------------------ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCC
T ss_pred -------------------------ccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEE
Confidence 12337889999999998877765 7889999994 44455555543 458889
Q ss_pred EEcCCC-EEEEEe-CCCcEEEEeCcccCCCcceeee--eeeccCCccEEEEEEccCCCEEEE-eCCCCcEEEEecCC--c
Q 012007 284 VAGFDS-LVFTGS-ADGTVKVWRRELQGKGTKHCLA--QVLLKHENAVTALAVNQESAVVYC-GSSDGLVNFWECEK--H 356 (473)
Q Consensus 284 ~~~~~~-~l~s~~-~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~l~~-~~~dg~i~iwd~~~--~ 356 (473)
+|+|++ .+++++ .++.|.+||+...+. ..... .........+..++|+|++++|++ +..++.|.+||+.. +
T Consensus 135 ~~s~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g 212 (343)
T 1ri6_A 135 NISPDNRTLWVPALKQDRICLFTVSDDGH--LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG 212 (343)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEEECTTSC--EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS
T ss_pred EECCCCCEEEEecCCCCEEEEEEecCCCc--eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence 999998 666666 899999999974221 11111 122223457889999999997654 45889999999953 2
Q ss_pred ccc-cceee----cC--cce--EEEEEecCCEEEE-EeCCCcEEEEecCC-CCceeEEEEecCCCCceeEEEEecCCCCC
Q 012007 357 LSH-GGVLR----GH--KMA--VLCLAAAGNLVFS-GSADRNICLWRREE-SGAHSCLAVLTGHTGPVKCLAVEEDRDHD 425 (473)
Q Consensus 357 ~~~-~~~~~----~~--~~~--v~~~~~~~~~l~s-~~~dg~i~iwd~~~-~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 425 (473)
... ..... ++ ... ..++++++++|++ +..++.|.+|++.. .+....+..+..+.. +.+++|+|+++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~-- 289 (343)
T 1ri6_A 213 NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGK-- 289 (343)
T ss_dssp CCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSS--
T ss_pred cEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCC--
Confidence 110 11111 11 112 3567778887774 45789999999983 122455666655544 89999999998
Q ss_pred cccccCCCccEEEEEee-CCCcEEEEEcCC
Q 012007 426 HEYHQKGDQRWTVYSGS-LDKSVKVWRVSE 454 (473)
Q Consensus 426 ~~~~~~~~~~~~l~s~s-~Dg~v~iW~i~~ 454 (473)
+|++++ .|+.|.+|++..
T Consensus 290 -----------~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 290 -----------YLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp -----------EEEEECTTTCEEEEEEEET
T ss_pred -----------EEEEecCCCCeEEEEEEcC
Confidence 566665 689999997653
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.1e-23 Score=191.93 Aligned_cols=275 Identities=8% Similarity=0.116 Sum_probs=190.5
Q ss_pred CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeC-CCeEEEEeCCCCCe-eeEEeeccccccc
Q 012007 133 GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQ-DGKIRIWKVSRKNA-SVHKRVGSLPTFK 208 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-dg~i~vwd~~~~~~-~~~~~~~~~~~~~ 208 (473)
+..+++++.++.|++||.. +....+..+...+ +++|+|++++|++++. ++.|.+||+.+++. .....
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-------- 80 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ-------- 80 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE--------
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc--------
Confidence 3457788889999999965 3334444555666 9999999997777666 89999999988765 22221
Q ss_pred eeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCC---CEEEEEcCCCeeeEEeecCCCceeEEEE
Q 012007 209 DYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDK---TLKVWRISDCKCLESINAHDDAINSVVA 285 (473)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg---~v~vwd~~~~~~~~~~~~~~~~v~~l~~ 285 (473)
.+.....+++|+|++++|+++..++ .|.+||+.+++.+..+..+ ....+++|
T Consensus 81 ------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~ 135 (331)
T 3u4y_A 81 ------------------------EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAI 135 (331)
T ss_dssp ------------------------ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEE
T ss_pred ------------------------cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEE
Confidence 1444455599999999999655553 8999999999998887754 45689999
Q ss_pred cCCC--EEEEEeCCCc-EEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEE-EEeCCCCcEEEEecCCccc---
Q 012007 286 GFDS--LVFTGSADGT-VKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVV-YCGSSDGLVNFWECEKHLS--- 358 (473)
Q Consensus 286 ~~~~--~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~~~dg~i~iwd~~~~~~--- 358 (473)
+|++ ++++...++. |.+|++...+...... .........+..++|+|+++++ +++..++.|.+||+.++..
T Consensus 136 spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~ 213 (331)
T 3u4y_A 136 SPNGNGLILIDRSSANTVRRFKIDADGVLFDTG--QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITL 213 (331)
T ss_dssp CTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE--EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEE
T ss_pred CCCCCEEEEEecCCCceEEEEEECCCCcEeecC--CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccce
Confidence 9998 4445556688 9999987433211111 1222445568999999999865 4555789999999987654
Q ss_pred ccceeecCcceEEEEEecCCEEEEEe-CCCcEEEEecCCCCceeEEEEecCC----CCc---eeEEEEecCCCCCccccc
Q 012007 359 HGGVLRGHKMAVLCLAAAGNLVFSGS-ADRNICLWRREESGAHSCLAVLTGH----TGP---VKCLAVEEDRDHDHEYHQ 430 (473)
Q Consensus 359 ~~~~~~~~~~~v~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~h----~~~---V~~l~~~~~~~~~~~~~~ 430 (473)
......+....-.+++++|++|+++. .++.|.+||+.++.. ..+..+..+ ... ...++|+|+++.
T Consensus 214 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~------ 286 (331)
T 3u4y_A 214 LNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL-SFVKSFGHGLLIDPRPLFGANQMALNKTETK------ 286 (331)
T ss_dssp EEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE-EEEEEEECCCCCCCGGGTTCCCEEECTTSSE------
T ss_pred eeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce-eeecccccccccCCCCcccccceEECCCCCE------
Confidence 32222222333467788999776654 578899999987422 223333322 222 356899999982
Q ss_pred CCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 431 KGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 431 ~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
+++++..++.|.+|++....
T Consensus 287 ------l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 287 ------LFISANISRELKVFTISGKV 306 (331)
T ss_dssp ------EEEEETTTTEEEEEETTSCE
T ss_pred ------EEEecCCCCcEEEEEecCCc
Confidence 44556667799999998654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=192.05 Aligned_cols=246 Identities=12% Similarity=0.079 Sum_probs=179.0
Q ss_pred EeeCCCcEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCC-CCeeeEEeeccccccceeEeecC
Q 012007 138 TGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSR-KNASVHKRVGSLPTFKDYVKSSV 215 (473)
Q Consensus 138 tg~~dg~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 215 (473)
.++.|+.|++||.. .....+..|...|.+++|+|++++|++++ ++.|++||+.+ ++.......
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~-------------- 81 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTG-------------- 81 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCT--------------
T ss_pred CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccc--------------
Confidence 34678999999976 34445667889999999999999999976 78999999988 654321110
Q ss_pred CCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe--CCCCEEEEEc--CCCeeeEEeecCCCceeEEEEcCCC-E
Q 012007 216 NPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS--WDKTLKVWRI--SDCKCLESINAHDDAINSVVAGFDS-L 290 (473)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s--~dg~v~vwd~--~~~~~~~~~~~~~~~v~~l~~~~~~-~ 290 (473)
.+...+.+++|+|++++|++++ .++.+.||.+ .+++ ...+..+ ..+..+.|+|++ .
T Consensus 82 -----------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~ 142 (297)
T 2ojh_A 82 -----------------FATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKS 142 (297)
T ss_dssp -----------------TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSE
T ss_pred -----------------cccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCE
Confidence 1346788999999999999999 3345555554 4444 3444433 348889999998 4
Q ss_pred EE-EEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC-CCCcEEEEecCCcccccceeecCcc
Q 012007 291 VF-TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS-SDGLVNFWECEKHLSHGGVLRGHKM 368 (473)
Q Consensus 291 l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 368 (473)
|+ ++..++.+++|+++.... ....+..+...+.+++|+|++++|+.++ .++.+++|++.........+..|..
T Consensus 143 l~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 217 (297)
T 2ojh_A 143 FTYCGIRDQVFDIYSMDIDSG-----VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAY 217 (297)
T ss_dssp EEEEEEETTEEEEEEEETTTC-----CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSE
T ss_pred EEEEECCCCceEEEEEECCCC-----cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCc
Confidence 44 788899999999753221 1244556778899999999999877655 5899999988632223344555555
Q ss_pred eEE--EEEecCCEEEEEeCC-----------CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 369 AVL--CLAAAGNLVFSGSAD-----------RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 369 ~v~--~~~~~~~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
.+. ++++++++|++++.+ +.|.+||+.++. ...+..+.+|...|.+++|+|+++
T Consensus 218 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~~spdg~ 284 (297)
T 2ojh_A 218 GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN-VETLFDLFGGQGTMNSPNWSPDGD 284 (297)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS-CEEEEEEEESTTTSCSCCBCTTSS
T ss_pred ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC-ceeeeccCCCCcccccceECCCCC
Confidence 554 455679999888766 569999998743 344555667888999999999998
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-23 Score=214.78 Aligned_cols=271 Identities=10% Similarity=0.068 Sum_probs=198.2
Q ss_pred EEEecCCEEEEeeC-CC-----cEEEeeCCcc--ccccccCc------------------------ccEEEEEEeCCCCE
Q 012007 128 SLAASGDLLYTGSD-SK-----NIRVWKNLKE--FSGFKSNS------------------------GLVKAIIISGDSNK 175 (473)
Q Consensus 128 ~~~~~g~~l~tg~~-dg-----~i~vwd~~~~--~~~~~~h~------------------------~~V~~l~~s~~~~~ 175 (473)
++++||++|++++. |+ .|++||.... ...+..+. ..|.+++|+|||++
T Consensus 43 ~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~ 122 (741)
T 2ecf_A 43 KVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQR 122 (741)
T ss_dssp EECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSE
T ss_pred eEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCE
Confidence 56678999999998 88 8999997532 22232222 34889999999999
Q ss_pred EEEEeCCCeEEEEeCCCC---CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEE
Q 012007 176 IFTGHQDGKIRIWKVSRK---NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYS 252 (473)
Q Consensus 176 l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s 252 (473)
|++++. +.|++||+.++ ..... ..|...+.+++|+|||++|+.
T Consensus 123 l~~~~~-~~i~~~d~~~~~~~~~~~l---------------------------------~~~~~~~~~~~~SPDG~~la~ 168 (741)
T 2ecf_A 123 LLFPLG-GELYLYDLKQEGKAAVRQL---------------------------------THGEGFATDAKLSPKGGFVSF 168 (741)
T ss_dssp EEEEET-TEEEEEESSSCSTTSCCBC---------------------------------CCSSSCEEEEEECTTSSEEEE
T ss_pred EEEEeC-CcEEEEECCCCCcceEEEc---------------------------------ccCCcccccccCCCCCCEEEE
Confidence 999886 89999999877 32211 126678999999999999999
Q ss_pred EeCCCCEEEEEcCCCeeeEEeecCCCc----------------eeEEEEcCCC-EEEEEeCCC-----------------
Q 012007 253 GSWDKTLKVWRISDCKCLESINAHDDA----------------INSVVAGFDS-LVFTGSADG----------------- 298 (473)
Q Consensus 253 ~s~dg~v~vwd~~~~~~~~~~~~~~~~----------------v~~l~~~~~~-~l~s~~~dg----------------- 298 (473)
++ ++.|++||+.+++.......+... +..+.|+|++ .|++++.|+
T Consensus 169 ~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~ 247 (741)
T 2ecf_A 169 IR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTD 247 (741)
T ss_dssp EE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEE
T ss_pred Ee-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCccc
Confidence 88 468999999998876655444332 4779999998 677776655
Q ss_pred ----------------cEEEEeCcc-cCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC-----CCcEEEEecCCc
Q 012007 299 ----------------TVKVWRREL-QGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-----DGLVNFWECEKH 356 (473)
Q Consensus 299 ----------------~i~vwd~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-----dg~i~iwd~~~~ 356 (473)
.|.+||+.. +.. . .......|...+..++| |||++|++++. +..|++||+.++
T Consensus 248 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~---~-~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g 322 (741)
T 2ecf_A 248 VIEQRYPAAGDANVQVKLGVISPAEQAQT---Q-WIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN 322 (741)
T ss_dssp EEEEECCBTTSCCCEEEEEEECSSTTCCC---E-EECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC
T ss_pred ceEeecCCCCCCCCeeEEEEEECCCCCce---E-EecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC
Confidence 788888864 321 1 11111257788999999 99999987653 567999999876
Q ss_pred ccccceeecCcc------eEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEE-EEecCCCCCcccc
Q 012007 357 LSHGGVLRGHKM------AVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCL-AVEEDRDHDHEYH 429 (473)
Q Consensus 357 ~~~~~~~~~~~~------~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l-~~~~~~~~~~~~~ 429 (473)
... .....+.. ....++++|+++++++.||.++||.++..+ . ...+..|...|..+ .|+|+++.
T Consensus 323 ~~~-~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~--~-~~~l~~~~~~v~~~~~~s~dg~~----- 393 (741)
T 2ecf_A 323 QQR-VLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG--K-AAALTHGNWSVDELLAVDEKAGL----- 393 (741)
T ss_dssp CEE-EEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS--C-EEESCCSSSCEEEEEEEETTTTE-----
T ss_pred ceE-EEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCC--C-eeeeeecceEEEeEeEEeCCCCE-----
Confidence 433 23333321 245778899999999999988888876322 3 66777888888887 59999973
Q ss_pred cCCCccEEEEEeeCCC--cEEEEEcCC
Q 012007 430 QKGDQRWTVYSGSLDK--SVKVWRVSE 454 (473)
Q Consensus 430 ~~~~~~~~l~s~s~Dg--~v~iW~i~~ 454 (473)
++++++.|+ .++||++..
T Consensus 394 -------l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 394 -------AYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp -------EEEEECSSCTTCBEEEEEET
T ss_pred -------EEEEEeCCCCceEEEEEEEc
Confidence 445666666 899999875
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-22 Score=198.30 Aligned_cols=301 Identities=12% Similarity=0.075 Sum_probs=207.9
Q ss_pred ceeeee-eecccEEEEEecCCEEEEeeCCCcEEEeeC--C--ccccccccCcccEEEEEEeC----CCCEEEEEeC-CCe
Q 012007 115 LIGSIV-RKEGHIYSLAASGDLLYTGSDSKNIRVWKN--L--KEFSGFKSNSGLVKAIIISG----DSNKIFTGHQ-DGK 184 (473)
Q Consensus 115 ~~~~l~-~h~~~V~~~~~~g~~l~tg~~dg~i~vwd~--~--~~~~~~~~h~~~V~~l~~s~----~~~~l~s~~~-dg~ 184 (473)
++.++. +|.-+...++++|++|++++.|++|++||+ . +.+..+. +...+..++|+| ||++|++++. +++
T Consensus 171 ~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~ 249 (543)
T 1nir_A 171 IVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQ 249 (543)
T ss_dssp EEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSE
T ss_pred EEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCe
Confidence 455555 444344556778999999999999999998 3 2344444 455689999999 9999999885 899
Q ss_pred EEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCE-EEEEeCCCCEEEEE
Q 012007 185 IRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGL-LYSGSWDKTLKVWR 263 (473)
Q Consensus 185 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~s~s~dg~v~vwd 263 (473)
|.+||..+.+............. ...+.....+..+.+++++.. +++...++.|.+||
T Consensus 250 v~v~D~~t~~~~~~i~~~g~~~~---------------------~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd 308 (543)
T 1nir_A 250 FAIMDGETLEPKQIVSTRGMTVD---------------------TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN 308 (543)
T ss_dssp EEEEETTTCCEEEEEECCEECSS---------------------SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred EEEEeccccccceeecccCcccC---------------------ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEE
Confidence 99999988876554432110000 000012337899999997664 55667889999999
Q ss_pred cCCCeeeE--EeecCCCceeEEEEcCCC-EEE-EEeCCCcEEEEeCcccCCCcceeeeeeec----cCCccEEEEEEccC
Q 012007 264 ISDCKCLE--SINAHDDAINSVVAGFDS-LVF-TGSADGTVKVWRRELQGKGTKHCLAQVLL----KHENAVTALAVNQE 335 (473)
Q Consensus 264 ~~~~~~~~--~~~~~~~~v~~l~~~~~~-~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~----~~~~~v~~l~~~~~ 335 (473)
+.+.+.+. .+. +...+..+.|+|++ +++ ++..+++|.+||+..+. +...+. .|......+ ++|+
T Consensus 309 ~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~------l~~~i~~g~~ph~g~g~~~-~~p~ 380 (543)
T 1nir_A 309 YKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR------LSALVDVGKTPHPGRGANF-VHPK 380 (543)
T ss_dssp CTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE------EEEEEECSSSBCCTTCEEE-EETT
T ss_pred ecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCe------EEEeeccCCCCCCCCCccc-CCCC
Confidence 98866544 443 56678889999998 454 45568999999997432 222222 355444333 4676
Q ss_pred -CCEEEEeC-CCCcEEEEecCCc------ccccceeecCcceE--EEEEecCCEEEEEe-------CCCcEEEEecCCCC
Q 012007 336 -SAVVYCGS-SDGLVNFWECEKH------LSHGGVLRGHKMAV--LCLAAAGNLVFSGS-------ADRNICLWRREESG 398 (473)
Q Consensus 336 -~~~l~~~~-~dg~i~iwd~~~~------~~~~~~~~~~~~~v--~~~~~~~~~l~s~~-------~dg~i~iwd~~~~~ 398 (473)
+.+++++. .|++|.+||+.+. ......+.+|...+ ..++|++++|++++ .+++|.+||+.+..
T Consensus 381 ~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 381 YGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred CccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 66666665 5899999999862 34445666776543 55678899999987 27799999999854
Q ss_pred ce-eEEEE-----ecCCCCceeEEEEecCCCCCcccccCCCccEEEEEe----eCCCcEEEEEcCCCCC
Q 012007 399 AH-SCLAV-----LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG----SLDKSVKVWRVSEHAP 457 (473)
Q Consensus 399 ~~-~~~~~-----~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~----s~Dg~v~iW~i~~~~~ 457 (473)
.. +.+.. +..+...+..++|+|+++. ++++. +.|+.|.|||..+++.
T Consensus 461 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~------------~~~s~~~~~~~~~~i~v~D~~t~~~ 517 (543)
T 1nir_A 461 AKYQVLPIAEWADLGEGAKRVVQPEYNKRGDE------------VWFSVWNGKNDSSALVVVDDKTLKL 517 (543)
T ss_dssp SCCEEECHHHHHCCCSSCCEEEEEEECSSSSE------------EEEEEECCTTSCCEEEEEETTTTEE
T ss_pred CCeEEeechhhcccCCCCCceEeccCCCCCCE------------EEEEeecCCCCCCeEEEEECCCceE
Confidence 33 22111 2456778999999999983 33332 2589999999988763
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-21 Score=183.60 Aligned_cols=268 Identities=9% Similarity=0.022 Sum_probs=188.2
Q ss_pred CEEEEeeCCCcEEEeeCCc--cccccccCc-c-cEEEEEEeCCCCEEE-EEeCCCeEEEEeCCCCCeeeEEeeccccccc
Q 012007 134 DLLYTGSDSKNIRVWKNLK--EFSGFKSNS-G-LVKAIIISGDSNKIF-TGHQDGKIRIWKVSRKNASVHKRVGSLPTFK 208 (473)
Q Consensus 134 ~~l~tg~~dg~i~vwd~~~--~~~~~~~h~-~-~V~~l~~s~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 208 (473)
++|++++.++.|++||... .+..+.... . .+..++|+|++++++ ++..++.|.+||+.+++...........
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~--- 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE--- 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT---
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc---
Confidence 5789999999999999753 333333222 1 588999999998765 4556789999999887754433321100
Q ss_pred eeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe------------CCCCEEEEEcCCCeeeEEeecC
Q 012007 209 DYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS------------WDKTLKVWRISDCKCLESINAH 276 (473)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s------------~dg~v~vwd~~~~~~~~~~~~~ 276 (473)
.|...+.+++|+|++++|+++. .++.|.+||+.+++.+..+..
T Consensus 79 ------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~- 133 (337)
T 1pby_B 79 ------------------------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA- 133 (337)
T ss_dssp ------------------------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-
T ss_pred ------------------------cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-
Confidence 0223567899999999999886 579999999999998887765
Q ss_pred CCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC---------
Q 012007 277 DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG--------- 346 (473)
Q Consensus 277 ~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg--------- 346 (473)
...+.+++++|++ +++++ ++.|.+||+.... ....+..+.. ...+.|+|++..++..+.++
T Consensus 134 ~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~------~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 204 (337)
T 1pby_B 134 PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGT------LVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYT 204 (337)
T ss_dssp CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTE------EEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred CCCcceeEECCCCCEEEEe--CCeEEEEECCCCc------Eeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeec
Confidence 4567889999998 56666 6899999987432 1122222210 01237889888766554333
Q ss_pred ---------------cEEEEecCCcccccceeecCcceE--EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCC
Q 012007 347 ---------------LVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGH 409 (473)
Q Consensus 347 ---------------~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h 409 (473)
.|.+||+.+..........+...+ .++++++++|+++ ++.|.+||+.+ .+.+..+..
T Consensus 205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~---~~~~~~~~~- 278 (337)
T 1pby_B 205 ARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK---NASIKRVPL- 278 (337)
T ss_dssp EBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT---TEEEEEEEC-
T ss_pred cccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC---CcCcceecC-
Confidence 468999987654322233344344 5667789999888 78999999987 345555543
Q ss_pred CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 410 TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 410 ~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
...+.+++|+|+++ +|++++.|+.|++||+.+++.
T Consensus 279 ~~~~~~~~~s~dg~-------------~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 279 PHSYYSVNVSTDGS-------------TVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp SSCCCEEEECTTSC-------------EEEEESBSSEEEEEETTTCCE
T ss_pred CCceeeEEECCCCC-------------EEEEEcCCCcEEEEECcCCcE
Confidence 34678999999998 778888899999999987753
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-21 Score=181.59 Aligned_cols=267 Identities=11% Similarity=0.175 Sum_probs=178.7
Q ss_pred CCcEEEeeCCc---ccc--ccccCcccEEEEEEeCCCCEEEEEeC---CCeEEEEeCCCCCeeeEEeeccccccceeEee
Q 012007 142 SKNIRVWKNLK---EFS--GFKSNSGLVKAIIISGDSNKIFTGHQ---DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKS 213 (473)
Q Consensus 142 dg~i~vwd~~~---~~~--~~~~h~~~V~~l~~s~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 213 (473)
++.|.+|++.. .+. ....+...+..++|+|+|+ |++++. ++.|++|++.++........
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~------------ 81 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV------------ 81 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE------------
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee------------
Confidence 55677875431 111 2234556788899999998 665554 68999999976553222111
Q ss_pred cCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCC-C--eeeEEeecC---------CCce
Q 012007 214 SVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISD-C--KCLESINAH---------DDAI 280 (473)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~-~--~~~~~~~~~---------~~~v 280 (473)
..+...+..++|+|++++|++++ .++.|.+|++.. + +.+..+... ...+
T Consensus 82 ------------------~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~ 143 (347)
T 3hfq_A 82 ------------------VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHI 143 (347)
T ss_dssp ------------------EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCE
T ss_pred ------------------ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCc
Confidence 12667788999999999999888 678999999962 2 333333321 2247
Q ss_pred eEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEE-eCCCCcEEEEecCC--c
Q 012007 281 NSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC-GSSDGLVNFWECEK--H 356 (473)
Q Consensus 281 ~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~dg~i~iwd~~~--~ 356 (473)
.+++++|++ ++++...++.|.+|++...+. ..............+..++|+|+|++|++ ...++.|.+|++.. +
T Consensus 144 ~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~--~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g 221 (347)
T 3hfq_A 144 HYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQ--LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG 221 (347)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEEEECTTSC--EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred eEEEECCCCcEEEEeCCCCEEEEEEECCCCc--EEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence 889999998 555666688999999973221 11111112223346788999999996655 56788999999874 2
Q ss_pred cc-ccceeecC--------cceEEEEEecCCEEE-EEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCc
Q 012007 357 LS-HGGVLRGH--------KMAVLCLAAAGNLVF-SGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDH 426 (473)
Q Consensus 357 ~~-~~~~~~~~--------~~~v~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~ 426 (473)
.. ........ ...-.+++++|++|+ +...++.|.+|++...+....+..+..+...+.+++|+|+++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~--- 298 (347)
T 3hfq_A 222 AFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEA--- 298 (347)
T ss_dssp EEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSS---
T ss_pred ceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCC---
Confidence 11 11111111 122366778899774 556689999999974334566777777777789999999998
Q ss_pred ccccCCCccEEEEEeeC-CCcEEEEEcCC
Q 012007 427 EYHQKGDQRWTVYSGSL-DKSVKVWRVSE 454 (473)
Q Consensus 427 ~~~~~~~~~~~l~s~s~-Dg~v~iW~i~~ 454 (473)
+|++++. ++.|.+|++..
T Consensus 299 ----------~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 299 ----------FVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp ----------EEEEEETTTTEEEEEEECT
T ss_pred ----------EEEEEEcCCCcEEEEEEeC
Confidence 6666654 58999997754
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-20 Score=177.76 Aligned_cols=265 Identities=8% Similarity=0.032 Sum_probs=186.7
Q ss_pred EEEecCCEEEEeeC-------CCcEEEeeCCc--cccccccCcccEEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCCeee
Q 012007 128 SLAASGDLLYTGSD-------SKNIRVWKNLK--EFSGFKSNSGLVKAIIISGDSNKIFTG-HQDGKIRIWKVSRKNASV 197 (473)
Q Consensus 128 ~~~~~g~~l~tg~~-------dg~i~vwd~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~ 197 (473)
+++++|++|++++. ++.|.+||... .+..+. ....+..++|+++|++++.+ ..++.|.+||..+++...
T Consensus 47 ~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~ 125 (353)
T 3vgz_A 47 AYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH-NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKG 125 (353)
T ss_dssp EEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE-ESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEE
T ss_pred EECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe-cCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEE
Confidence 45567888888774 46899999653 233333 23457889999999966555 557999999999887655
Q ss_pred EEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe--CCCCEEEEEcCCCeeeEEeec
Q 012007 198 HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS--WDKTLKVWRISDCKCLESINA 275 (473)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s--~dg~v~vwd~~~~~~~~~~~~ 275 (473)
........... ......+.+++|+|+++++++++ .++.|.+||+.+++.+..+..
T Consensus 126 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~ 182 (353)
T 3vgz_A 126 RLVLDDRKRTE-----------------------EVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN 182 (353)
T ss_dssp EEESCCCCCCS-----------------------SCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC
T ss_pred EEecCCCcccc-----------------------ccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC
Confidence 44322100000 00111367899999999888876 478899999999999988876
Q ss_pred CCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC-CCcEEEEec
Q 012007 276 HDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-DGLVNFWEC 353 (473)
Q Consensus 276 ~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~iwd~ 353 (473)
+...+.++.+++++ .+++++.++.|.+||+..... .........++...+..++|+|+++++++++. ++.|.+||.
T Consensus 183 ~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~ 260 (353)
T 3vgz_A 183 TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKI--LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDT 260 (353)
T ss_dssp CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEE--EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEET
T ss_pred CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeE--EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 66678899999987 788888999999999874321 01111111134567889999999997766654 589999999
Q ss_pred CCcccccceeecCcceEEEEEecCCEEEEEe-CCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 354 EKHLSHGGVLRGHKMAVLCLAAAGNLVFSGS-ADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 354 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
.++........ ......++++++++++++. .++.|.+||..+ .+.+..+... ..+.+++|+|+++
T Consensus 261 ~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~---~~~~~~~~~~-~~~~~~~~s~dg~ 326 (353)
T 3vgz_A 261 RNGNILAKVAA-PESLAVLFNPARNEAYVTHRQAGKVSVIDAKS---YKVVKTFDTP-THPNSLALSADGK 326 (353)
T ss_dssp TTCCEEEEEEC-SSCCCEEEETTTTEEEEEETTTTEEEEEETTT---TEEEEEEECC-SEEEEEEECTTSC
T ss_pred CCCcEEEEEEc-CCCceEEECCCCCEEEEEECCCCeEEEEECCC---CeEEEEEecC-CCCCeEEEcCCCC
Confidence 87654433332 3334577888998666555 689999999988 4555555543 4679999999998
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-21 Score=187.59 Aligned_cols=313 Identities=12% Similarity=0.099 Sum_probs=192.0
Q ss_pred cEEEEEecCCEEEEeeCCCcEEEeeCCcc------------cc-----ccccCcccEEEEEEeCCCCEEE----EEeCCC
Q 012007 125 HIYSLAASGDLLYTGSDSKNIRVWKNLKE------------FS-----GFKSNSGLVKAIIISGDSNKIF----TGHQDG 183 (473)
Q Consensus 125 ~V~~~~~~g~~l~tg~~dg~i~vwd~~~~------------~~-----~~~~h~~~V~~l~~s~~~~~l~----s~~~dg 183 (473)
...++++++.++++|+.|+ |+||+.... +. ....+.+.|.+++|+|++++|+ +|+.|+
T Consensus 40 n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~ 118 (434)
T 2oit_A 40 SLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGS 118 (434)
T ss_dssp BCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEE
T ss_pred cEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCc
Confidence 3457788899999999988 889863211 00 0122456799999999999999 788899
Q ss_pred eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC-CCEEEEEeCCCCEEEE
Q 012007 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVW 262 (473)
Q Consensus 184 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~v~vw 262 (473)
.|+|||+.+.......... .+ .......+|...|.+++|+|+ +.+|++++.||+|++|
T Consensus 119 ~v~iwd~~~~~~~~~~~~~----------------~~-----~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iw 177 (434)
T 2oit_A 119 IIAFFDVRTFSNEAKQQKR----------------PF-----AYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVL 177 (434)
T ss_dssp EEEEEEHHHHHCTTCSSCC----------------CS-----EEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred eEEEEEccccccCCcCCcc----------------ee-----eeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEE
Confidence 9999998654100000000 00 000111248999999999997 8899999999999999
Q ss_pred EcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeee---eccCCccEEEEEEccCCCE
Q 012007 263 RISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQV---LLKHENAVTALAVNQESAV 338 (473)
Q Consensus 263 d~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~~ 338 (473)
|++++..+.....|...|.+++|+|++ +|++|+.||.|++||++ +.. ....... ...|...|.+++|++++.+
T Consensus 178 D~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~--~~~~~~~~~~~~~~~~~v~~v~w~~~~~~ 254 (434)
T 2oit_A 178 QVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE--KKVIPCPPFYESDHPVRVLDVLWIGTYVF 254 (434)
T ss_dssp EESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCE--EEEECCCTTCCTTSCEEEEEEEEEETTEE
T ss_pred EcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc--cccccCCcccCCCCceeEEEEEEecCceE
Confidence 999998877777899999999999998 89999999999999987 211 1111111 1124458999999998877
Q ss_pred EEEe-CCCC------cEEEEecCCcccc-cceee----------cCcceEEEEE--ecCCEEEEEe-CCCcEEEEecCCC
Q 012007 339 VYCG-SSDG------LVNFWECEKHLSH-GGVLR----------GHKMAVLCLA--AAGNLVFSGS-ADRNICLWRREES 397 (473)
Q Consensus 339 l~~~-~~dg------~i~iwd~~~~~~~-~~~~~----------~~~~~v~~~~--~~~~~l~s~~-~dg~i~iwd~~~~ 397 (473)
+++. ..|| .+++|++++.... ...+. +.......+. .+.+++++++ ..+.|.|+.....
T Consensus 255 l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~ 334 (434)
T 2oit_A 255 AIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSD 334 (434)
T ss_dssp EEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTT
T ss_pred EEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCC
Confidence 7543 3333 3899999754211 00100 1111222232 4545555544 4455666664432
Q ss_pred Cc-eeEEEE---------e--cCCCCceeEEEEecCCCCCcccccCC--CccEEEEEeeCCCcEEEEEcCCCCCCccCC
Q 012007 398 GA-HSCLAV---------L--TGHTGPVKCLAVEEDRDHDHEYHQKG--DQRWTVYSGSLDKSVKVWRVSEHAPDLKGL 462 (473)
Q Consensus 398 ~~-~~~~~~---------~--~~h~~~V~~l~~~~~~~~~~~~~~~~--~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~~ 462 (473)
+. +..... + .+.......+++.-.........+.. ....+|..-+.||.+..|.+-...+..+.+
T Consensus 335 ~~~~~~~~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~~~~~~~~~ 413 (434)
T 2oit_A 335 QINWESWLLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMINQNPGVKSL 413 (434)
T ss_dssp SSCEEEEEECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEECSTTCCCC
T ss_pred CCccEEEeccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEecCcccccc
Confidence 11 111110 0 11222345555544333110000000 122378888899999999998744444443
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=208.87 Aligned_cols=283 Identities=8% Similarity=0.039 Sum_probs=186.9
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcc---cEEEEEEeCCCCEEEEEeCC---------CeEEEEeCCCC
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSG---LVKAIIISGDSNKIFTGHQD---------GKIRIWKVSRK 193 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~---~V~~l~~s~~~~~l~s~~~d---------g~i~vwd~~~~ 193 (473)
+++++|+++++ +.||+|++||.. +....+..|.. .|.+++|+|||++|++++.+ +.|++||+.++
T Consensus 23 ~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 101 (723)
T 1xfd_A 23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG 101 (723)
T ss_dssp CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred EEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCC
Confidence 45567787766 678999999965 33344455554 49999999999999999874 78889999887
Q ss_pred CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEe
Q 012007 194 NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI 273 (473)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 273 (473)
+...... .. +|...+..++|+|||++|+.++. +.|++||+.+++.....
T Consensus 102 ~~~~l~~---~~---------------------------~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~ 150 (723)
T 1xfd_A 102 DPQSLDP---PE---------------------------VSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVV 150 (723)
T ss_dssp CCEECCC---TT---------------------------CCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEE
T ss_pred ceEeccC---Cc---------------------------cccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEe
Confidence 6411110 00 25556889999999999999986 79999999988877666
Q ss_pred ecCCCce------------------eEEEEcCCC-EEEEEeCCC----------------------------------cE
Q 012007 274 NAHDDAI------------------NSVVAGFDS-LVFTGSADG----------------------------------TV 300 (473)
Q Consensus 274 ~~~~~~v------------------~~l~~~~~~-~l~s~~~dg----------------------------------~i 300 (473)
..+...+ .++.|+|++ .|++++.|+ .|
T Consensus 151 ~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 151 STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 5544333 789999998 677766443 78
Q ss_pred EEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC----CCcEEEEecCCcccccceeecCcce------E
Q 012007 301 KVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS----DGLVNFWECEKHLSHGGVLRGHKMA------V 370 (473)
Q Consensus 301 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~------v 370 (473)
++||+..+..............+...+..++|+|||++|++... +..|++||+.++.........+... .
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 310 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEE 310 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCC
Confidence 89998643210000000111224678999999999998876543 3579999998765332222222222 4
Q ss_pred EEEEecCCEEEE--EeCCC------cEEEEecCCCCceeEEEEecCCCCceeE-EEEecCCCCCcccccCCCccEEEEEe
Q 012007 371 LCLAAAGNLVFS--GSADR------NICLWRREESGAHSCLAVLTGHTGPVKC-LAVEEDRDHDHEYHQKGDQRWTVYSG 441 (473)
Q Consensus 371 ~~~~~~~~~l~s--~~~dg------~i~iwd~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~~~~~~~~~~~~~~l~s~ 441 (473)
..++++|+.|+. +..++ .|.+||...++...+...+..+...+.. ++|+|+++ .|+..
T Consensus 311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~-------------~l~~~ 377 (723)
T 1xfd_A 311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGN-------------KIYFL 377 (723)
T ss_dssp CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTT-------------EEEEE
T ss_pred ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCC-------------EEEEE
Confidence 578889986664 45666 4666763232210013334433344554 69999998 56544
Q ss_pred -eCC--CcEEEEEcCCC
Q 012007 442 -SLD--KSVKVWRVSEH 455 (473)
Q Consensus 442 -s~D--g~v~iW~i~~~ 455 (473)
..+ +.++||++...
T Consensus 378 ~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 378 STEDLPRRRQLYSANTV 394 (723)
T ss_dssp ESSSCTTCCEEEEECSS
T ss_pred EcCCCCcceEEEEEeCC
Confidence 444 88999999753
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-21 Score=198.76 Aligned_cols=268 Identities=9% Similarity=0.040 Sum_probs=188.2
Q ss_pred CCEEEEeeCCCcEEEeeCCcc-c--cccccCc-----------------ccEEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q 012007 133 GDLLYTGSDSKNIRVWKNLKE-F--SGFKSNS-----------------GLVKAIIISGDSNKIFTGHQDGKIRIWKVSR 192 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~~~-~--~~~~~h~-----------------~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~ 192 (473)
|+.+++++.|+ | +||.... . ..+..|. ..|.+++|+|| ++++.+ .++.|++||+.+
T Consensus 35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~ 110 (706)
T 2z3z_A 35 GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGGLVGFDMLA 110 (706)
T ss_dssp TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTEEEEEETTT
T ss_pred CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCEEEEEECCC
Confidence 77777778788 8 9996532 2 3333332 46999999999 666655 469999999987
Q ss_pred CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC-----C
Q 012007 193 KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD-----C 267 (473)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~-----~ 267 (473)
++..... .+...+.+++|+|+|++|+++ .|+.|++||+.+ +
T Consensus 111 ~~~~~l~---------------------------------~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 111 RKVTYLF---------------------------------DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp TEEEEEE---------------------------------CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred CceEEcc---------------------------------CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence 7542221 255678889999999999986 579999999998 7
Q ss_pred eeeEEeecCCCc--------------eeEEEEcCCC-EEEEEe---------------------------------CCCc
Q 012007 268 KCLESINAHDDA--------------INSVVAGFDS-LVFTGS---------------------------------ADGT 299 (473)
Q Consensus 268 ~~~~~~~~~~~~--------------v~~l~~~~~~-~l~s~~---------------------------------~dg~ 299 (473)
+.......+... +.++.|+|++ .|++++ .+..
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 766554444332 4889999998 677776 4467
Q ss_pred EEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC-----cEEEEecCCcccccceee-cCcc-----
Q 012007 300 VKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG-----LVNFWECEKHLSHGGVLR-GHKM----- 368 (473)
Q Consensus 300 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~-~~~~----- 368 (473)
|.+||+..+. .........|...+..++|+|||++|++++.++ .|.+||+.++........ .+..
T Consensus 237 l~~~d~~~~~----~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~ 312 (706)
T 2z3z_A 237 VGIYHLATGK----TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL 312 (706)
T ss_dssp EEEEETTTTE----EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred EEEEECCCCc----eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence 9999986422 111112235677899999999999999877665 899999987633222222 2221
Q ss_pred eEEEEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeE-EEEecCCCCCcccccCCCccEEEEEeeCCC
Q 012007 369 AVLCLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKC-LAVEEDRDHDHEYHQKGDQRWTVYSGSLDK 445 (473)
Q Consensus 369 ~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg 445 (473)
....+++ +|++|+++..|+.++||++... ...+..+..|...+.. ++|+|+++. ++++++.++
T Consensus 313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~--~~~~~~l~~~~~~v~~~~~~spdg~~------------l~~~~~~~~ 378 (706)
T 2z3z_A 313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT--GRLIRQVTKGEWEVTNFAGFDPKGTR------------LYFESTEAS 378 (706)
T ss_dssp SCCEECTTCSSEEEEEECTTSSCEEEEEETT--SCEEEECCCSSSCEEEEEEECTTSSE------------EEEEESSSC
T ss_pred CCceeecCCCCEEEEEEccCCccEEEEEECC--CCEEEecCCCCeEEEeeeEEcCCCCE------------EEEEecCCC
Confidence 2257888 9999999999999999988731 3456677778878877 899999872 445555555
Q ss_pred ----cEEEEEcCCCC
Q 012007 446 ----SVKVWRVSEHA 456 (473)
Q Consensus 446 ----~v~iW~i~~~~ 456 (473)
.|..|++..+.
T Consensus 379 ~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 379 PLERHFYCIDIKGGK 393 (706)
T ss_dssp TTCBEEEEEETTCCC
T ss_pred CceEEEEEEEcCCCC
Confidence 56666665543
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-20 Score=202.51 Aligned_cols=314 Identities=10% Similarity=0.027 Sum_probs=213.6
Q ss_pred cceeeeeeecccEEEEEe--cCCEEEEeeCC------CcEEEeeCC-ccccccccCcccE-------EEEEEeCCCCEEE
Q 012007 114 GLIGSIVRKEGHIYSLAA--SGDLLYTGSDS------KNIRVWKNL-KEFSGFKSNSGLV-------KAIIISGDSNKIF 177 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~--~g~~l~tg~~d------g~i~vwd~~-~~~~~~~~h~~~V-------~~l~~s~~~~~l~ 177 (473)
+....|.+|.+.|.++++ ||++||+++.+ ..|++|+.. .....+..|...+ ..++|+|||++++
T Consensus 43 g~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~ 122 (1045)
T 1k32_A 43 GSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLII 122 (1045)
T ss_dssp CCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEE
T ss_pred CcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEE
Confidence 445677889888877665 69999988643 378999875 3456778888888 9999999999777
Q ss_pred EEeCC------CeEEEEeCCCCCeeeEEeecc-----------------cc-c---------------------------
Q 012007 178 TGHQD------GKIRIWKVSRKNASVHKRVGS-----------------LP-T--------------------------- 206 (473)
Q Consensus 178 s~~~d------g~i~vwd~~~~~~~~~~~~~~-----------------~~-~--------------------------- 206 (473)
+++.+ ..|++|++.++.......... .+ .
T Consensus 123 ~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~ 202 (1045)
T 1k32_A 123 STDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM 202 (1045)
T ss_dssp EECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC
T ss_pred EECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCC
Confidence 77754 458888876654321110000 00 0
Q ss_pred ----------cceeE-eecCCCc-ceEEEee-cceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEe
Q 012007 207 ----------FKDYV-KSSVNPK-NYVEVRR-NRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI 273 (473)
Q Consensus 207 ----------~~~~~-~~~~~~~-~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 273 (473)
...++ ....+.. .+..... ......+.+...+...+|+|+|++|+.+. ++.|++||+... .+..+
T Consensus 203 ~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l 280 (1045)
T 1k32_A 203 STHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKI 280 (1045)
T ss_dssp SSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEEC
T ss_pred CCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEe-CCEEEEecCCce-Eeeee
Confidence 00000 0011111 1111111 11111122223467789999999888885 899999999444 34455
Q ss_pred ec-----------CCCceeEEEEc-CCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCc-cEEEEEEccCCCEE
Q 012007 274 NA-----------HDDAINSVVAG-FDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHEN-AVTALAVNQESAVV 339 (473)
Q Consensus 274 ~~-----------~~~~v~~l~~~-~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~l 339 (473)
.. |...+.++.|+ |++ .+++++ ++.|.+|++..+. ...+..|.. .+..++|+ +++.|
T Consensus 281 ~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~s-dg~~l 351 (1045)
T 1k32_A 281 EIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-------VLKVPEPLRIRYVRRGGD-TKVAF 351 (1045)
T ss_dssp CCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-------EEECSCCSCEEEEEECSS-SEEEE
T ss_pred ccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-------eEEccCCCcceEEeeeEc-CCCeE
Confidence 44 33468999999 998 566665 8899999986321 123455666 89999999 99999
Q ss_pred EEeCCCCcEE-EEecCCcccccceeecCcceE--EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEE
Q 012007 340 YCGSSDGLVN-FWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCL 416 (473)
Q Consensus 340 ~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l 416 (473)
+.++.++.+. +||+...... .+.+|...+ .+++++|++|++++.++.|++||+.++ +....+.+|.+.|.++
T Consensus 352 ~~~s~~~~l~~~~d~~~~~~~--~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg---~~~~~~~~~~~~v~~~ 426 (1045)
T 1k32_A 352 IHGTREGDFLGIYDYRTGKAE--KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG---KPTVIERSREAMITDF 426 (1045)
T ss_dssp EEEETTEEEEEEEETTTCCEE--ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECSSSCCCCE
T ss_pred EEEECCCceEEEEECCCCCce--EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC---ceEEeccCCCCCccce
Confidence 9888888888 8998764332 222555544 556678999999999999999999883 4555556889999999
Q ss_pred EEecCCCCCcccccCCCccEEEEEeeCCC----------cEEEEEcCCCC
Q 012007 417 AVEEDRDHDHEYHQKGDQRWTVYSGSLDK----------SVKVWRVSEHA 456 (473)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg----------~v~iW~i~~~~ 456 (473)
+|+||++ +|++++.++ .|++||+..++
T Consensus 427 ~~SpDG~-------------~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 427 TISDNSR-------------FIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp EECTTSC-------------EEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred EECCCCC-------------eEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 9999998 777776654 89999998764
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=4e-20 Score=173.33 Aligned_cols=270 Identities=10% Similarity=0.187 Sum_probs=175.9
Q ss_pred ecccEE--EEEecCCEEEEeeCC-CcEEEeeCC--c-c---ccccccCcccEEEEEEeCCCCEEEEEeC-CCeEEEEeCC
Q 012007 122 KEGHIY--SLAASGDLLYTGSDS-KNIRVWKNL--K-E---FSGFKSNSGLVKAIIISGDSNKIFTGHQ-DGKIRIWKVS 191 (473)
Q Consensus 122 h~~~V~--~~~~~g~~l~tg~~d-g~i~vwd~~--~-~---~~~~~~h~~~V~~l~~s~~~~~l~s~~~-dg~i~vwd~~ 191 (473)
|.+.+. +++++|++|++++.+ +.|++|++. . . +..+..+ +.+..++|+|++++|++++. ++.|.+||+.
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence 444444 455679988888886 999999864 1 1 2233333 37899999999998877765 8899999985
Q ss_pred CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCC-Cee
Q 012007 192 RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISD-CKC 269 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~-~~~ 269 (473)
.+....... .+.....+.+++|+|++++|++++ .++.|.+||+.+ ++.
T Consensus 115 ~~~~~~~~~------------------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 115 DGLPVGVVD------------------------------VVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp TTEEEEEEE------------------------------EECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CCccccccc------------------------------cccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 322111110 111344688999999999888887 899999999987 644
Q ss_pred eE----Eeec-CCCceeEEEEcCCC-EEE-EEeCCCcEEEEeCcccCCCcc-eeeeeeec---cCCccEEEEEEccCCCE
Q 012007 270 LE----SINA-HDDAINSVVAGFDS-LVF-TGSADGTVKVWRRELQGKGTK-HCLAQVLL---KHENAVTALAVNQESAV 338 (473)
Q Consensus 270 ~~----~~~~-~~~~v~~l~~~~~~-~l~-s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~---~~~~~v~~l~~~~~~~~ 338 (473)
.. .+.. ....+..++|+|++ +++ ++..++.|.+|++........ ........ .....+..++|+|++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 244 (343)
T 1ri6_A 165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH 244 (343)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE
Confidence 32 2232 34578889999998 454 455889999999963211011 11111111 11346778999999987
Q ss_pred EE-EeCCCCcEEEEecCC--c-ccccceeecC-cceEEEEEecCCEEEEEe-CCCcEEEEecCCC-CceeEEEEecCCCC
Q 012007 339 VY-CGSSDGLVNFWECEK--H-LSHGGVLRGH-KMAVLCLAAAGNLVFSGS-ADRNICLWRREES-GAHSCLAVLTGHTG 411 (473)
Q Consensus 339 l~-~~~~dg~i~iwd~~~--~-~~~~~~~~~~-~~~v~~~~~~~~~l~s~~-~dg~i~iwd~~~~-~~~~~~~~~~~h~~ 411 (473)
|+ ++..++.|.+||+.. + ......+..+ .....++++++++|++++ .++.|.+|+++.. +..+.+..+.. ..
T Consensus 245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~ 323 (343)
T 1ri6_A 245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQ 323 (343)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SS
T ss_pred EEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CC
Confidence 77 555799999999972 1 1222222222 233456777899888887 6899999966531 22344555544 24
Q ss_pred ceeEEEEecCCC
Q 012007 412 PVKCLAVEEDRD 423 (473)
Q Consensus 412 ~V~~l~~~~~~~ 423 (473)
...+++|.++.+
T Consensus 324 ~p~~i~~~~~~~ 335 (343)
T 1ri6_A 324 GPMWVVVNAHEG 335 (343)
T ss_dssp SCCEEEEEEEC-
T ss_pred CCeeEEEEcccC
Confidence 567888888764
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=8e-21 Score=196.33 Aligned_cols=290 Identities=9% Similarity=0.080 Sum_probs=190.9
Q ss_pred ccEEEEEecC-CEEEEeeCCCcEEEeeCCc-cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCC-----CCee
Q 012007 124 GHIYSLAASG-DLLYTGSDSKNIRVWKNLK-EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSR-----KNAS 196 (473)
Q Consensus 124 ~~V~~~~~~g-~~l~tg~~dg~i~vwd~~~-~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~-----~~~~ 196 (473)
..|.+++++. +.++.+. |+.|++||... ....+..+...+.+++|+|||++|+.+ .|+.|++||+.+ ++..
T Consensus 82 ~~v~~~~~spd~~~~~~~-~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~ 159 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLFT-QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAI 159 (706)
T ss_dssp CCCEEEEETTTTEEEEEE-TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCE
T ss_pred cCceeEEECCCCeEEEEE-CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcE
Confidence 3466665542 5555554 59999999763 344455677789999999999999985 689999999987 5432
Q ss_pred eEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe----------------------
Q 012007 197 VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS---------------------- 254 (473)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s---------------------- 254 (473)
........ ..... . . ....+...+.++.|+|||++|++++
T Consensus 160 ~~~~~~~~----~~~~g-~------------~-~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~ 221 (706)
T 2z3z_A 160 AVTIDGTE----TLVYG-Q------------A-VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESK 221 (706)
T ss_dssp ESCSCCBT----TEEES-S------------C-CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEE
T ss_pred EeccCCCC----CeEcc-c------------c-hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceE
Confidence 21111000 00000 0 0 0001223468899999999999987
Q ss_pred -----------CCCCEEEEEcCCCeeeEEee--cCCCceeEEEEcCCC-EEEEEeCCC-----cEEEEeCcccCCCccee
Q 012007 255 -----------WDKTLKVWRISDCKCLESIN--AHDDAINSVVAGFDS-LVFTGSADG-----TVKVWRRELQGKGTKHC 315 (473)
Q Consensus 255 -----------~dg~v~vwd~~~~~~~~~~~--~~~~~v~~l~~~~~~-~l~s~~~dg-----~i~vwd~~~~~~~~~~~ 315 (473)
.+..|++||+.+++...... .|...+..+.|+|++ .|++++.++ .|.+||+..+..
T Consensus 222 ~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~----- 296 (706)
T 2z3z_A 222 PLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF----- 296 (706)
T ss_dssp EECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE-----
T ss_pred EeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce-----
Confidence 44679999999988655442 466789999999998 677777665 899999874311
Q ss_pred eeeee-ccCC---ccEEEEEEcc--CCCEEEEeCCCCcEEEEecCCcccccceeecCcceE---EEEEecCCEEEEEeC-
Q 012007 316 LAQVL-LKHE---NAVTALAVNQ--ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAV---LCLAAAGNLVFSGSA- 385 (473)
Q Consensus 316 ~~~~~-~~~~---~~v~~l~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v---~~~~~~~~~l~s~~~- 385 (473)
..... ..+. ..+..++|+| +|++++++..|+.++||++.........+..+...+ ..++++++.|+.++.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 297 VRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp EEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred eeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence 11111 1122 2246789999 999999999999999998762222223444555444 456778887766554
Q ss_pred CC----cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEe-eCC---CcEEEEEcCCCC
Q 012007 386 DR----NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG-SLD---KSVKVWRVSEHA 456 (473)
Q Consensus 386 dg----~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~-s~D---g~v~iW~i~~~~ 456 (473)
++ .|..||+.++. ...+. |...+.+++|+|+++ +|+.. +.+ +.|++||+..++
T Consensus 377 ~~~~~~~l~~~d~~~~~----~~~l~-~~~~~~~~~~spdg~-------------~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 377 ASPLERHFYCIDIKGGK----TKDLT-PESGMHRTQLSPDGS-------------AIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SCTTCBEEEEEETTCCC----CEESC-CSSSEEEEEECTTSS-------------EEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCCceEEEEEEEcCCCC----ceecc-CCCceEEEEECCCCC-------------EEEEEecCCCCCcEEEEEECCCCe
Confidence 44 56666666532 23333 667799999999998 55544 333 569999998764
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-20 Score=183.05 Aligned_cols=224 Identities=15% Similarity=0.187 Sum_probs=156.5
Q ss_pred CcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEE
Q 012007 143 KNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVE 222 (473)
Q Consensus 143 g~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (473)
+.|++|+.... .+...++.+++++++.+|++++.|+ |++|+....... .... . ....
T Consensus 23 ~~vri~~~~~~-----~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~--~~~~--~----------~~~~--- 79 (434)
T 2oit_A 23 KKVRIFDSPEE-----LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ--NKPG--D----------DPNK--- 79 (434)
T ss_dssp CEEECSCCCSS-----CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC--CCTT--C----------CTTC---
T ss_pred eeEEecCCccc-----cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh--cccc--c----------Cccc---
Confidence 57899875422 2345689999999999999999988 889876421100 0000 0 0000
Q ss_pred EeecceeeEeeccCCeeEEEEcCCCCEEE----EEeCCCCEEEEEcCCC--------ee---eEEeecCCCceeEEEEcC
Q 012007 223 VRRNRSVLKIRHYDAVSCLSLNAEQGLLY----SGSWDKTLKVWRISDC--------KC---LESINAHDDAINSVVAGF 287 (473)
Q Consensus 223 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~----s~s~dg~v~vwd~~~~--------~~---~~~~~~~~~~v~~l~~~~ 287 (473)
.........+.+...|.+++|+|++++|+ +|+.|+.|++||+.++ +. +..+.+|...|.+++|+|
T Consensus 80 ~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p 159 (434)
T 2oit_A 80 IVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNP 159 (434)
T ss_dssp EEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECS
T ss_pred ccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECC
Confidence 00011112234677899999999999999 7889999999998754 22 455667999999999999
Q ss_pred C-C-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceee-
Q 012007 288 D-S-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLR- 364 (473)
Q Consensus 288 ~-~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~- 364 (473)
+ + +|++++.||.|++||++.. ........|...|.+++|+|+|++|++|+.||.|++||.+. ... ..+.
T Consensus 160 ~~~~~las~s~Dg~v~iwD~~~~------~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~-~~~-~~~~~ 231 (434)
T 2oit_A 160 TVPSMVAVCLADGSIAVLQVTET------VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL-QEK-KVIPC 231 (434)
T ss_dssp SCTTEEEEEETTSCEEEEEESSS------EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTC-CEE-EEECC
T ss_pred CCCCEEEEEECCCeEEEEEcCCC------cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCC-ccc-ccccC
Confidence 7 4 8999999999999999742 12334456888999999999999999999999999999982 211 1111
Q ss_pred ------cCcceEEEEEec--CCEEEE-EeCCC------cEEEEecCCC
Q 012007 365 ------GHKMAVLCLAAA--GNLVFS-GSADR------NICLWRREES 397 (473)
Q Consensus 365 ------~~~~~v~~~~~~--~~~l~s-~~~dg------~i~iwd~~~~ 397 (473)
.|...+.++.++ +.++++ +..|| .+++|++...
T Consensus 232 ~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 232 PPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 234477777765 444433 33443 3899999864
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-20 Score=196.10 Aligned_cols=287 Identities=8% Similarity=0.048 Sum_probs=191.7
Q ss_pred EEEEecCCEEEEeeCCCcEEEeeCCc----cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeec
Q 012007 127 YSLAASGDLLYTGSDSKNIRVWKNLK----EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 127 ~~~~~~g~~l~tg~~dg~i~vwd~~~----~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 202 (473)
.++++||++|++++. +.|++||... ....+..|...+.+++|+|||++|+.++ ++.|++||+.+++........
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~ 191 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADG 191 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCC
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCC
Confidence 356778999999987 8999999763 4667778888999999999999999987 469999999876543221110
Q ss_pred cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCC-------------------------
Q 012007 203 SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDK------------------------- 257 (473)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg------------------------- 257 (473)
... ... .............+..++|+|||++|++++.|+
T Consensus 192 ~~~----~~~------------g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~ 255 (741)
T 2ecf_A 192 STT----IGN------------GIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPA 255 (741)
T ss_dssp CSS----EEE------------SCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred ccc----eec------------cccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCC
Confidence 000 000 000000000112357899999999999998765
Q ss_pred --------CEEEEEcCC-CeeeEEee--cCCCceeEEEEcCCC-EEEEEeC-----CCcEEEEeCcccCCCcceeeeeee
Q 012007 258 --------TLKVWRISD-CKCLESIN--AHDDAINSVVAGFDS-LVFTGSA-----DGTVKVWRRELQGKGTKHCLAQVL 320 (473)
Q Consensus 258 --------~v~vwd~~~-~~~~~~~~--~~~~~v~~l~~~~~~-~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~~~ 320 (473)
.|.+||+.+ ++...... .|...+..++| |++ .|++++. +..|.+||+..+. .....
T Consensus 256 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~------~~~~~ 328 (741)
T 2ecf_A 256 AGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ------QRVLA 328 (741)
T ss_dssp TTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC------EEEEE
T ss_pred CCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc------eEEEE
Confidence 789999988 77654433 47788999999 998 5655443 5679999987432 11222
Q ss_pred ccCCc----cEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEE---EEEecCCEEE-EEeCCC--cEE
Q 012007 321 LKHEN----AVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVL---CLAAAGNLVF-SGSADR--NIC 390 (473)
Q Consensus 321 ~~~~~----~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~---~~~~~~~~l~-s~~~dg--~i~ 390 (473)
..+.. .+..++|+|+|+++++++.||.++||.+..... ...+..|...+. .++++++.|+ +++.++ .++
T Consensus 329 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~ 407 (741)
T 2ecf_A 329 HETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQ 407 (741)
T ss_dssp EEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBE
T ss_pred EcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEE
Confidence 22222 346789999999999999999888887652222 344555555443 4778888765 455555 899
Q ss_pred EEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCC---CcEEEEEcCC
Q 012007 391 LWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLD---KSVKVWRVSE 454 (473)
Q Consensus 391 iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~D---g~v~iW~i~~ 454 (473)
||++...+ .....+.. ...+..++|+|+++. ++++.+.. ..+.+|+...
T Consensus 408 l~~~~~~g--~~~~~l~~-~~~~~~~~~spdg~~------------l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 408 IYAVPLQG--GQPQRLSK-APGMHSASFARNASV------------YVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp EEEEETTC--CCCEECCC-SCSEEEEEECTTSSE------------EEEEEEETTEEEEEEEEETTS
T ss_pred EEEEEcCC--CCeeeccc-CCCceEEEECCCCCE------------EEEEecCCCCCCeEEEEEcCC
Confidence 99986422 23444544 567889999999982 33333333 4688888754
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.87 E-value=5e-20 Score=190.89 Aligned_cols=267 Identities=10% Similarity=0.020 Sum_probs=175.1
Q ss_pred EEEEecCCEEEEeeCC---------CcEEEeeCCcc----ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Q 012007 127 YSLAASGDLLYTGSDS---------KNIRVWKNLKE----FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRK 193 (473)
Q Consensus 127 ~~~~~~g~~l~tg~~d---------g~i~vwd~~~~----~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~ 193 (473)
.++++||++|++++.+ +.|++||.... +.....|...+..++|+|||++|+.++. +.|++||+.++
T Consensus 66 ~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g 144 (723)
T 1xfd_A 66 YEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGK 144 (723)
T ss_dssp EEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSS
T ss_pred EEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCC
Confidence 4566789999999875 77889997632 2233445566999999999999999886 79999999887
Q ss_pred CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeecc---------CCeeEEEEcCCCCEEEEEeCCC-------
Q 012007 194 NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY---------DAVSCLSLNAEQGLLYSGSWDK------- 257 (473)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~l~~~~~~~~l~s~s~dg------- 257 (473)
+........... ....++. ..+.+++|+|||++|++++.|+
T Consensus 145 ~~~~~~~~~~~~-----------------------~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~ 201 (723)
T 1xfd_A 145 QAIRVVSTGKEG-----------------------VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIME 201 (723)
T ss_dssp CCEEEECCCBTT-----------------------TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEE
T ss_pred ceEEEecCCCCC-----------------------ceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEE
Confidence 654322211000 0001111 2347899999999999987553
Q ss_pred ---------------------------CEEEEEcCCCeeeEEeecC------CCceeEEEEcCCC-EEEEEeC----CCc
Q 012007 258 ---------------------------TLKVWRISDCKCLESINAH------DDAINSVVAGFDS-LVFTGSA----DGT 299 (473)
Q Consensus 258 ---------------------------~v~vwd~~~~~~~~~~~~~------~~~v~~l~~~~~~-~l~s~~~----dg~ 299 (473)
.|++||+.+++....+..+ ...+..+.|+|++ ++++... +..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 281 (723)
T 1xfd_A 202 LPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSI 281 (723)
T ss_dssp ECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEE
T ss_pred eeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEE
Confidence 7999999988865666544 5678999999999 4444433 357
Q ss_pred EEEEeCcccCCCcceeeeeeeccCCccE----EEEEEccCCCEEEE--eCCCC------cEEEEe-cCCccc--ccceee
Q 012007 300 VKVWRRELQGKGTKHCLAQVLLKHENAV----TALAVNQESAVVYC--GSSDG------LVNFWE-CEKHLS--HGGVLR 364 (473)
Q Consensus 300 i~vwd~~~~~~~~~~~~~~~~~~~~~~v----~~l~~~~~~~~l~~--~~~dg------~i~iwd-~~~~~~--~~~~~~ 364 (473)
|.+||+..+. ........+...+ ..++|+|+|+.|+. +..++ .|.+|| ...+.. ......
T Consensus 282 i~~~d~~~g~-----~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~ 356 (723)
T 1xfd_A 282 LTLCDATTGV-----CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS 356 (723)
T ss_dssp EEEEETTTCC-----EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC
T ss_pred EEEEeCCCCc-----ceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec
Confidence 9999986432 1111112233333 37899999987664 45666 567777 333320 222222
Q ss_pred cCcce--EEEEEecCCEEEEEeCC---CcEEEEecCCCCceeEEEEecC---CCCceeEEEEecCCC
Q 012007 365 GHKMA--VLCLAAAGNLVFSGSAD---RNICLWRREESGAHSCLAVLTG---HTGPVKCLAVEEDRD 423 (473)
Q Consensus 365 ~~~~~--v~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~---h~~~V~~l~~~~~~~ 423 (473)
++... +.+++++|+.|+..+.+ +.++||++...+. .....+.. |...+..++|+|+++
T Consensus 357 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~spdg~ 422 (723)
T 1xfd_A 357 GDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN-FNRQCLSCDLVENCTYFSASFSHSMD 422 (723)
T ss_dssp SSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT-CCCBCSSTTSSSSCCCCEEEECTTSS
T ss_pred CCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC-CCcceecccccCCCCeEEEEECCCCC
Confidence 23222 35788999998766555 7899999875321 12223333 677799999999988
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-19 Score=169.34 Aligned_cols=240 Identities=12% Similarity=0.092 Sum_probs=176.2
Q ss_pred cccEEEEEEeCCCCEEEEEeC-------CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee
Q 012007 161 SGLVKAIIISGDSNKIFTGHQ-------DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (473)
...+..++|+|++++|++++. ++.|.+||..+++......
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------------------- 86 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------------------- 86 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE---------------------------------
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe---------------------------------
Confidence 456789999999999988874 5689999999887554433
Q ss_pred ccCCeeEEEEcCCCCEEEEE-eCCCCEEEEEcCCCeeeEEeecCCCc---------eeEEEEcCCC-EEEEEe--CCCcE
Q 012007 234 HYDAVSCLSLNAEQGLLYSG-SWDKTLKVWRISDCKCLESINAHDDA---------INSVVAGFDS-LVFTGS--ADGTV 300 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~---------v~~l~~~~~~-~l~s~~--~dg~i 300 (473)
....+..++|++++++++++ ..++.|.+||+.+++.+..+..+... +.++.+++++ .+++++ .++.|
T Consensus 87 ~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i 166 (353)
T 3vgz_A 87 NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVI 166 (353)
T ss_dssp ESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEE
T ss_pred cCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceE
Confidence 33446789999999966655 45789999999999998888765432 6889999987 555554 58899
Q ss_pred EEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceee---cCcceE--EEEEe
Q 012007 301 KVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLR---GHKMAV--LCLAA 375 (473)
Q Consensus 301 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~v--~~~~~ 375 (473)
.+||..... ....+..+...+..++|+|++++|++++.++.|.+||+.+......... ++...+ .++++
T Consensus 167 ~~~d~~~~~------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 240 (353)
T 3vgz_A 167 WVVDGGNIK------LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT 240 (353)
T ss_dssp EEEETTTTE------EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET
T ss_pred EEEcCCCCc------eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC
Confidence 999986322 2333333455678899999999999999999999999987654433222 122233 56778
Q ss_pred cCCEEEEEeC-CCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 376 AGNLVFSGSA-DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 376 ~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
++++|++++. ++.|.+||..++ +.+..+.... ..+++|+|+++. ++++...++.|.+||+.+
T Consensus 241 dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~--~~~~~~s~dg~~------------l~v~~~~~~~v~~~d~~~ 303 (353)
T 3vgz_A 241 ARQRAFITDSKAAEVLVVDTRNG---NILAKVAAPE--SLAVLFNPARNE------------AYVTHRQAGKVSVIDAKS 303 (353)
T ss_dssp TTTEEEEEESSSSEEEEEETTTC---CEEEEEECSS--CCCEEEETTTTE------------EEEEETTTTEEEEEETTT
T ss_pred CCCEEEEEeCCCCEEEEEECCCC---cEEEEEEcCC--CceEEECCCCCE------------EEEEECCCCeEEEEECCC
Confidence 8987777665 489999999884 4444444332 267999999873 455555799999999987
Q ss_pred CC
Q 012007 455 HA 456 (473)
Q Consensus 455 ~~ 456 (473)
++
T Consensus 304 ~~ 305 (353)
T 3vgz_A 304 YK 305 (353)
T ss_dssp TE
T ss_pred Ce
Confidence 64
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-19 Score=168.06 Aligned_cols=272 Identities=9% Similarity=0.113 Sum_probs=177.0
Q ss_pred EEEEee----CCCcEEEeeCC---cc---ccccccCcccEEEEEEeCCCCEEEEEeCC----CeEEEEeCCCC--CeeeE
Q 012007 135 LLYTGS----DSKNIRVWKNL---KE---FSGFKSNSGLVKAIIISGDSNKIFTGHQD----GKIRIWKVSRK--NASVH 198 (473)
Q Consensus 135 ~l~tg~----~dg~i~vwd~~---~~---~~~~~~h~~~V~~l~~s~~~~~l~s~~~d----g~i~vwd~~~~--~~~~~ 198 (473)
+++.|+ .++.|.+|+.. .. +..+ +...+..++|+|||++|++++.+ +.|.+|++... .....
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 455553 35689998642 11 1222 66778889999999999999886 79999998763 22111
Q ss_pred EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEEe----
Q 012007 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESI---- 273 (473)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~---- 273 (473)
.... .+......+++ ++++|++++ .++.|.+|++.....+..+
T Consensus 93 ~~~~------------------------------~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~ 140 (361)
T 3scy_A 93 NTQK------------------------------TMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVI 140 (361)
T ss_dssp EEEE------------------------------CSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEE
T ss_pred eEec------------------------------cCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeE
Confidence 1110 13445667777 788787776 5789999999754332211
Q ss_pred e--c--------CCCceeEEEEcCCC-EEEE-EeCCCcEEEEeCcccCC------Ccce-eeeeeeccCCccEEEEEEcc
Q 012007 274 N--A--------HDDAINSVVAGFDS-LVFT-GSADGTVKVWRRELQGK------GTKH-CLAQVLLKHENAVTALAVNQ 334 (473)
Q Consensus 274 ~--~--------~~~~v~~l~~~~~~-~l~s-~~~dg~i~vwd~~~~~~------~~~~-~~~~~~~~~~~~v~~l~~~~ 334 (473)
. + +...+.+++|+|++ ++++ ...++.|.+|++..... .... ............+..++|+|
T Consensus 141 ~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp 220 (361)
T 3scy_A 141 EFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS 220 (361)
T ss_dssp ECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT
T ss_pred EccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC
Confidence 1 1 12235789999998 4544 44589999999874321 0000 00122334456678999999
Q ss_pred CCCEEEEeC-CCCcEEEEecCCcccc-cceee---cCc--ceEEEEEecCCEEEEEeCC--CcEEEEecCC-CCceeEEE
Q 012007 335 ESAVVYCGS-SDGLVNFWECEKHLSH-GGVLR---GHK--MAVLCLAAAGNLVFSGSAD--RNICLWRREE-SGAHSCLA 404 (473)
Q Consensus 335 ~~~~l~~~~-~dg~i~iwd~~~~~~~-~~~~~---~~~--~~v~~~~~~~~~l~s~~~d--g~i~iwd~~~-~~~~~~~~ 404 (473)
+++++++++ .++.|.+||+.++... ..... .+. ..-.+++++|++|+++..+ +.|.+|++.. .+....+.
T Consensus 221 dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~ 300 (361)
T 3scy_A 221 DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVG 300 (361)
T ss_dssp TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEE
T ss_pred CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEee
Confidence 999877766 6899999998754221 11111 111 1246677899988776654 8999999962 22344555
Q ss_pred EecCCCCceeEEEEecCCCCCcccccCCCccEEEEEee-CCCcEEEEEcCC
Q 012007 405 VLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS-LDKSVKVWRVSE 454 (473)
Q Consensus 405 ~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s-~Dg~v~iW~i~~ 454 (473)
.+.. ...+.+++|+|+++ +|++++ .++.|.+|++..
T Consensus 301 ~~~~-g~~~~~~~~spdg~-------------~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 301 YQLT-GIHPRNFIITPNGK-------------YLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp EEEC-SSCCCEEEECTTSC-------------EEEEEETTTTEEEEEEECT
T ss_pred EecC-CCCCceEEECCCCC-------------EEEEEECCCCCEEEEEEEC
Confidence 5554 56789999999998 666666 679999987764
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.7e-20 Score=199.28 Aligned_cols=288 Identities=11% Similarity=0.078 Sum_probs=215.3
Q ss_pred ceeeeeeecccEEEEEecCC-EEEEeeCCCcEEEeeCC---ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 115 LIGSIVRKEGHIYSLAASGD-LLYTGSDSKNIRVWKNL---KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~~g~-~l~tg~~dg~i~vwd~~---~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
....+.+|.+.+.++.++++ ++++++.|+.++||... .....+..|. .+..++|+|||++|+.+ .++.|++|++
T Consensus 195 ~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~ 272 (1045)
T 1k32_A 195 AFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNP 272 (1045)
T ss_dssp EEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECT
T ss_pred CeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecC
Confidence 34556889999999999866 45677778999999632 3344455554 46778999999999887 5899999999
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEc-CCCCEEEEEeCCCCEEEEEcCCCee
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLN-AEQGLLYSGSWDKTLKVWRISDCKC 269 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~s~s~dg~v~vwd~~~~~~ 269 (473)
...... .+.... .........|...+.+++|+ |+|++|++++ ++.|.+|++..++.
T Consensus 273 ~~~~l~---~l~~~~-------------------~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~ 329 (1045)
T 1k32_A 273 DTEKIE---KIEIGD-------------------LESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV 329 (1045)
T ss_dssp TTCCEE---ECCCCC-------------------CCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBE
T ss_pred CceEee---eeccCc-------------------ccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCce
Confidence 443322 111000 00011122366789999999 9999999888 78999999988765
Q ss_pred eEEeecCCC-ceeEEEEcCCC-EEEEEeCCCcEE-EEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC
Q 012007 270 LESINAHDD-AINSVVAGFDS-LVFTGSADGTVK-VWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG 346 (473)
Q Consensus 270 ~~~~~~~~~-~v~~l~~~~~~-~l~s~~~dg~i~-vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg 346 (473)
.. +..|.. .+..+.|+ ++ .++.++.++.+. +||+.... . ..+..|...+..++|+|+|++|++++.++
T Consensus 330 ~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~------~-~~l~~~~~~~~~~~~SpDG~~la~~~~~~ 400 (1045)
T 1k32_A 330 LK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK------A-EKFEENLGNVFAMGVDRNGKFAVVANDRF 400 (1045)
T ss_dssp EE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC------E-EECCCCCCSEEEEEECTTSSEEEEEETTS
T ss_pred EE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC------c-eEecCCccceeeeEECCCCCEEEEECCCC
Confidence 44 556666 89999999 87 777777788888 88876321 1 22336778899999999999999999999
Q ss_pred cEEEEecCCcccccceeecCcceE--EEEEecCCEEEEEeCCC----------cEEEEecCCCCceeEEEEecCCCCcee
Q 012007 347 LVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSADR----------NICLWRREESGAHSCLAVLTGHTGPVK 414 (473)
Q Consensus 347 ~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~~dg----------~i~iwd~~~~~~~~~~~~~~~h~~~V~ 414 (473)
.|++||+.++... ....+|...+ .+++++|++|++++.++ .|++||+.++ . +..+..|...+.
T Consensus 401 ~v~~~d~~tg~~~-~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g---~-~~~l~~~~~~~~ 475 (1045)
T 1k32_A 401 EIMTVDLETGKPT-VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR---K-IFAATTENSHDY 475 (1045)
T ss_dssp EEEEEETTTCCEE-EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT---E-EEECSCSSSBEE
T ss_pred eEEEEECCCCceE-EeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC---c-EEEeeCCCcccC
Confidence 9999999876433 3444666554 56778899998887654 8999999873 3 667778888899
Q ss_pred EEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 415 CLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
.++|+|+++ .|++++.++...+|+...
T Consensus 476 ~~~~spdG~-------------~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 476 APAFDADSK-------------NLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp EEEECTTSC-------------EEEEEESCCCCCEECSSS
T ss_pred CceEcCCCC-------------EEEEEecccCCcCcchhc
Confidence 999999998 788888888888887653
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.1e-20 Score=168.01 Aligned_cols=225 Identities=12% Similarity=0.084 Sum_probs=163.6
Q ss_pred EEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCC
Q 012007 178 TGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDK 257 (473)
Q Consensus 178 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg 257 (473)
.++.|+.|++||+.+++..... .|...|.+++|+|++++|++++ ++
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~---------------------------------~~~~~v~~~~~spdg~~l~~~~-~~ 62 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVW---------------------------------QTPELFEAPNWSPDGKYLLLNS-EG 62 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEE---------------------------------EESSCCEEEEECTTSSEEEEEE-TT
T ss_pred CCCcceeEEEEeCCCCceeeec---------------------------------cCCcceEeeEECCCCCEEEEEc-CC
Confidence 3467899999999887643222 3788999999999999999987 78
Q ss_pred CEEEEEcCC-CeeeEEeecC-CCceeEEEEcCCC-EEEEEe--CCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEE
Q 012007 258 TLKVWRISD-CKCLESINAH-DDAINSVVAGFDS-LVFTGS--ADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAV 332 (473)
Q Consensus 258 ~v~vwd~~~-~~~~~~~~~~-~~~v~~l~~~~~~-~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 332 (473)
.|++||+.+ ++.......+ ...+.++.|+|++ .|++++ .++.+.||.++.... ....+.. ...+..++|
T Consensus 63 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~-~~~~~~~~~ 136 (297)
T 2ojh_A 63 LLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGG-----TPRLMTK-NLPSYWHGW 136 (297)
T ss_dssp EEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCC-----CCEECCS-SSSEEEEEE
T ss_pred eEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCC-----ceEEeec-CCCccceEE
Confidence 999999998 8777666655 3678999999998 777777 445666766543221 1122222 334889999
Q ss_pred ccCCCEEE-EeCCCCcEEEEecCCcccccceeecCcceEEE--EEecCCEEEEEe-CCCcEEEEecCCCCceeEEEEecC
Q 012007 333 NQESAVVY-CGSSDGLVNFWECEKHLSHGGVLRGHKMAVLC--LAAAGNLVFSGS-ADRNICLWRREESGAHSCLAVLTG 408 (473)
Q Consensus 333 ~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~ 408 (473)
+|++++|+ ++..++.+++|+++........+..+...+.+ +++++++|+.++ .++.+++|++... ...+..+..
T Consensus 137 spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~--~~~~~~~~~ 214 (297)
T 2ojh_A 137 SPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVD--GSSVERITD 214 (297)
T ss_dssp CTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT--SSCEEECCC
T ss_pred CCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCC--CCCcEEEec
Confidence 99999877 77789999999864322222344455555544 456788877666 5899999998732 234566777
Q ss_pred CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCC-----------CcEEEEEcCCCCC
Q 012007 409 HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLD-----------KSVKVWRVSEHAP 457 (473)
Q Consensus 409 h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~D-----------g~v~iW~i~~~~~ 457 (473)
|...+.+++|+|+++ +|++++.| +.|++|++..++.
T Consensus 215 ~~~~~~~~~~s~dg~-------------~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 215 SAYGDWFPHPSPSGD-------------KVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp CSEEEEEEEECTTSS-------------EEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred CCcccCCeEECCCCC-------------EEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 888999999999998 67777765 5699999987653
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.9e-20 Score=186.00 Aligned_cols=262 Identities=11% Similarity=0.035 Sum_probs=183.4
Q ss_pred ccEEEE--EecCCEEEEeeC-CCcEEEeeCC-ccccccccCc-ccEEEEEEeCCCCEEEEEeC---CCeEEEEeCCC--C
Q 012007 124 GHIYSL--AASGDLLYTGSD-SKNIRVWKNL-KEFSGFKSNS-GLVKAIIISGDSNKIFTGHQ---DGKIRIWKVSR--K 193 (473)
Q Consensus 124 ~~V~~~--~~~g~~l~tg~~-dg~i~vwd~~-~~~~~~~~h~-~~V~~l~~s~~~~~l~s~~~---dg~i~vwd~~~--~ 193 (473)
..|+++ ++||++||+++. ||+++||++. .....+..|. ..|..++|+|| +.+++++. +...++|.+.. .
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~ 100 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRP 100 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTST
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCC
Confidence 345554 578999999887 9999999854 2233444555 68999999999 77887775 45566665543 2
Q ss_pred CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCC-EEEEEeCCCCEEEEEcCCCeeeEE
Q 012007 194 NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQG-LLYSGSWDKTLKVWRISDCKCLES 272 (473)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~ 272 (473)
.... .+. ....+...+|+|+++ .+++.+.++.+.+||+.+++....
T Consensus 101 g~~~--~l~-------------------------------~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l 147 (582)
T 3o4h_A 101 GEEQ--RLE-------------------------------AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLREL 147 (582)
T ss_dssp TCCE--ECT-------------------------------TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEE
T ss_pred Cccc--ccc-------------------------------CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEe
Confidence 2111 111 222344567888775 334444455666999999887665
Q ss_pred eecCCCceeEEEEcCCC-EEEEEeCC----CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC-
Q 012007 273 INAHDDAINSVVAGFDS-LVFTGSAD----GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG- 346 (473)
Q Consensus 273 ~~~~~~~v~~l~~~~~~-~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg- 346 (473)
...+. .++.|+|+| .|++++.+ +.|++||+..+. ...+..|...+..++|+|||++|+++..++
T Consensus 148 ~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-------~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~ 217 (582)
T 3o4h_A 148 ARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-------LRVFDSGEGSFSSASISPGMKVTAGLETARE 217 (582)
T ss_dssp EEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC-------CEEECCSSCEEEEEEECTTSCEEEEEECSSC
T ss_pred ecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-------ceEeecCCCccccceECCCCCEEEEccCCCe
Confidence 54333 788999998 77767766 779999986432 234567888899999999999999888888
Q ss_pred -cEEEEecCCcccccceeecCcceE--EE--------EEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeE
Q 012007 347 -LVNFWECEKHLSHGGVLRGHKMAV--LC--------LAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKC 415 (473)
Q Consensus 347 -~i~iwd~~~~~~~~~~~~~~~~~v--~~--------~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~ 415 (473)
.|++||+.++... .+.+|...+ .. ++++|.++++++.|+.+++|++ . +.+. .+.+.|.+
T Consensus 218 ~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~-g----~~~~---~~~~~v~~ 287 (582)
T 3o4h_A 218 ARLVTVDPRDGSVE--DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID-G----ERVE---APQGNHGR 287 (582)
T ss_dssp EEEEEECTTTCCEE--ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET-T----EEEC---CCSSEEEE
T ss_pred eEEEEEcCCCCcEE--EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE-C----Ceec---cCCCceEE
Confidence 8999999876544 444554332 23 8889999999999999999999 2 2222 34467899
Q ss_pred EEEecCCCCCcccccCCCccEEEEEeeCCCc---EEEEEcC
Q 012007 416 LAVEEDRDHDHEYHQKGDQRWTVYSGSLDKS---VKVWRVS 453 (473)
Q Consensus 416 l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~---v~iW~i~ 453 (473)
++|+ ++. ++++++.+.. |.+|+..
T Consensus 288 ~~~s-dg~-------------~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 288 VVLW-RGK-------------LVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEE-TTE-------------EEEEEEETTEEEEEEEETTC
T ss_pred EEec-CCE-------------EEEEEcCCCCCCeEEEEcCC
Confidence 9999 776 7788777754 5566554
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-19 Score=167.95 Aligned_cols=234 Identities=8% Similarity=0.064 Sum_probs=165.0
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC
Q 012007 166 AIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA 245 (473)
Q Consensus 166 ~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 245 (473)
.+++++++.++++++.++.|++||+.+++........ ....+..++|+|
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~-------------------------------~~~~~~~~~~s~ 52 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP-------------------------------DKFGPGTAMMAP 52 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECS-------------------------------SCCSSCEEEECT
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecC-------------------------------CCCCCceeEECC
Confidence 3567788889999999999999999887654433211 112567899999
Q ss_pred CCCEEEE-EeCCCCEEEEEcCCCeeeEEeecCC------CceeEEEEcCCC-EEEEEeCC------------CcEEEEeC
Q 012007 246 EQGLLYS-GSWDKTLKVWRISDCKCLESINAHD------DAINSVVAGFDS-LVFTGSAD------------GTVKVWRR 305 (473)
Q Consensus 246 ~~~~l~s-~s~dg~v~vwd~~~~~~~~~~~~~~------~~v~~l~~~~~~-~l~s~~~d------------g~i~vwd~ 305 (473)
+++++++ +..++.|.+||+.+++.+..+..+. ..+..++++|++ ++++++.+ +.|.+||+
T Consensus 53 dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~ 132 (349)
T 1jmx_B 53 DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFST 132 (349)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEG
T ss_pred CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEEC
Confidence 9986654 4568899999999999887776432 237889999998 77777755 89999998
Q ss_pred cccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecC-------------------
Q 012007 306 ELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGH------------------- 366 (473)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------------- 366 (473)
..+.. ...... ..+...+.+++|+|+++ +++++. .|.+||+.++........+.
T Consensus 133 ~~~~~---~~~~~~-~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (349)
T 1jmx_B 133 ADGLE---AKPVRT-FPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQS 205 (349)
T ss_dssp GGGGG---BCCSEE-EECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCC
T ss_pred CCccc---cceeee-ccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCC
Confidence 74321 111112 22334688999999999 555544 49999987654322111110
Q ss_pred --------------------------------------------------cceEEEEEe-cCCEEEEEeCCCcEEEEecC
Q 012007 367 --------------------------------------------------KMAVLCLAA-AGNLVFSGSADRNICLWRRE 395 (473)
Q Consensus 367 --------------------------------------------------~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~ 395 (473)
.....++++ ++++++++ ++.|.+||+.
T Consensus 206 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~ 283 (349)
T 1jmx_B 206 PRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLK 283 (349)
T ss_dssp TTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETT
T ss_pred cceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECc
Confidence 001123457 88898888 8899999998
Q ss_pred CCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 396 ESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 396 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
+ .+.+..+.. ...+.+++|+|+++ .|++++.++.|++||+.+++
T Consensus 284 ~---~~~~~~~~~-~~~~~~~~~s~dg~-------------~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 284 Q---RKLIKAANL-DHTYYCVAFDKKGD-------------KLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp T---TEEEEEEEC-SSCCCEEEECSSSS-------------CEEEESBSSEEEEEETTTTE
T ss_pred c---CeEEEEEcC-CCCccceEECCCCC-------------EEEEecCCCeEEEEeccccc
Confidence 8 344555443 34578999999987 56667889999999998765
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-18 Score=162.37 Aligned_cols=237 Identities=11% Similarity=0.047 Sum_probs=163.3
Q ss_pred EEeCCCCE-EEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC
Q 012007 168 IISGDSNK-IFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE 246 (473)
Q Consensus 168 ~~s~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 246 (473)
.|.+++++ +++++.++.|++||+.+++....... +...+ +++|+|+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~--------------------------------~~~~~-~~~~s~d 50 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITL--------------------------------GYDFV-DTAITSD 50 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEEC--------------------------------CCCEE-EEEECSS
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEc--------------------------------cCCcc-eEEEcCC
Confidence 45555555 66777899999999998876444331 34455 8999999
Q ss_pred CCEEEEEeC-CCCEEEEEcCCCee-eEEeecCCCceeEEEEcCCC-EEEEEeCCC---cEEEEeCcccCCCcceeeeeee
Q 012007 247 QGLLYSGSW-DKTLKVWRISDCKC-LESINAHDDAINSVVAGFDS-LVFTGSADG---TVKVWRRELQGKGTKHCLAQVL 320 (473)
Q Consensus 247 ~~~l~s~s~-dg~v~vwd~~~~~~-~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~ 320 (473)
++++++++. ++.|.+||+.+++. ...+..+..+..+++++|++ +++++..++ .|.+||+.... ....+
T Consensus 51 g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~------~~~~~ 124 (331)
T 3u4y_A 51 CSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNK------FISTI 124 (331)
T ss_dssp SCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTE------EEEEE
T ss_pred CCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCC------eEEEE
Confidence 997777765 88999999999987 77777777766669999998 566544443 89999986432 12222
Q ss_pred ccCCccEEEEEEccCCCEEEEe-CCCCc-EEEEecCCccccc----ce-eecCcceEEEEEecCCEEEEE-eCCCcEEEE
Q 012007 321 LKHENAVTALAVNQESAVVYCG-SSDGL-VNFWECEKHLSHG----GV-LRGHKMAVLCLAAAGNLVFSG-SADRNICLW 392 (473)
Q Consensus 321 ~~~~~~v~~l~~~~~~~~l~~~-~~dg~-i~iwd~~~~~~~~----~~-~~~~~~~v~~~~~~~~~l~s~-~~dg~i~iw 392 (473)
.......+++|+|++++|+++ ..++. |.+|++....... .. ..+......+++++|++++++ ..++.|.+|
T Consensus 125 -~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 203 (331)
T 3u4y_A 125 -PIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGIL 203 (331)
T ss_dssp -ECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred -ECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEE
Confidence 234456899999999855544 55578 9999987432211 11 112233446677789865554 568999999
Q ss_pred ecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 393 RREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 393 d~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
|+.++.....+..+.. ...+.+++|+|+++. ++++...++.|.+||+.+++.
T Consensus 204 d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~------------l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 204 ETQNPENITLLNAVGT-NNLPGTIVVSRDGST------------VYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp ECSSTTSCEEEEEEEC-SSCCCCEEECTTSSE------------EEEECSSEEEEEEEETTTTEE
T ss_pred ECCCCcccceeeeccC-CCCCceEEECCCCCE------------EEEEEcCCCEEEEEECCCCce
Confidence 9987543222555554 366789999999982 445555688999999987654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-18 Score=164.67 Aligned_cols=246 Identities=11% Similarity=0.112 Sum_probs=163.6
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCeEEEEeCC-CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 161 SGLVKAIIISGDSNKIFTGHQDGKIRIWKVS-RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
...+..++|+|+|++|++++.+ .|.+|++. +++........ ....+.
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~-------------------------------~~g~~~ 86 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHP-------------------------------IGGHPR 86 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEE-------------------------------CCSSGG
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEee-------------------------------cCCCCc
Confidence 3468899999999999999888 99999986 55432211100 012245
Q ss_pred EEEEcCCCCE--EEEEe-------------CCCCEEEEEcC-CCeeeEEee----cCCCceeEEEEcCCC-EEEEEe-CC
Q 012007 240 CLSLNAEQGL--LYSGS-------------WDKTLKVWRIS-DCKCLESIN----AHDDAINSVVAGFDS-LVFTGS-AD 297 (473)
Q Consensus 240 ~l~~~~~~~~--l~s~s-------------~dg~v~vwd~~-~~~~~~~~~----~~~~~v~~l~~~~~~-~l~s~~-~d 297 (473)
+++|+|+|++ ++++. .++.+.+|++. +++....+. .+...+.+++|+|++ +++++. .+
T Consensus 87 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~ 166 (365)
T 1jof_A 87 ANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTA 166 (365)
T ss_dssp GGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred cEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCC
Confidence 5889999994 55553 68999999997 466544443 245678999999998 566554 46
Q ss_pred CcEEEEeCc-ccCCCcceeeeeeec--cCCccEEEEEEccCCCEEEEeCC-CCcEEEEecC--Ccccc-----ccee---
Q 012007 298 GTVKVWRRE-LQGKGTKHCLAQVLL--KHENAVTALAVNQESAVVYCGSS-DGLVNFWECE--KHLSH-----GGVL--- 363 (473)
Q Consensus 298 g~i~vwd~~-~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~-dg~i~iwd~~--~~~~~-----~~~~--- 363 (473)
+.|.+||+. .+. ........ .+...+..++|+|+|++|++++. ++.|.+|++. ++... ...+
T Consensus 167 ~~v~~~~~~~~g~----~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 242 (365)
T 1jof_A 167 NKLWTHRKLASGE----VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG 242 (365)
T ss_dssp TEEEEEEECTTSC----EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred CEEEEEEECCCCC----EEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC
Confidence 899999986 221 11112222 24567899999999998887664 7899999765 23211 0111
Q ss_pred -ecCc--------ceEEE-EEecCCEEEEEeCCC------cEEEEecCCCCceeEEE-EecCCCCceeEEEEec---CCC
Q 012007 364 -RGHK--------MAVLC-LAAAGNLVFSGSADR------NICLWRREESGAHSCLA-VLTGHTGPVKCLAVEE---DRD 423 (473)
Q Consensus 364 -~~~~--------~~v~~-~~~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~-~~~~h~~~V~~l~~~~---~~~ 423 (473)
.+|. ..-.+ ++++|++|+++..+. .|.+|++...+....+. ....+...+..++|+| +++
T Consensus 243 ~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~ 322 (365)
T 1jof_A 243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE 322 (365)
T ss_dssp CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT
T ss_pred cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCC
Confidence 1222 23356 778899888776432 89999996322222211 2334555678899999 787
Q ss_pred CCcccccCCCccEEEEEeeC-CCcEEEEEcCCC
Q 012007 424 HDHEYHQKGDQRWTVYSGSL-DKSVKVWRVSEH 455 (473)
Q Consensus 424 ~~~~~~~~~~~~~~l~s~s~-Dg~v~iW~i~~~ 455 (473)
+|++++. ++.|.+|++...
T Consensus 323 -------------~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 323 -------------WMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp -------------EEEEECSSSCEEEEEEEETT
T ss_pred -------------EEEEEEcCCCeEEEEEEchh
Confidence 6777765 589999999765
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.5e-19 Score=163.83 Aligned_cols=236 Identities=13% Similarity=0.091 Sum_probs=165.9
Q ss_pred EEEEecCCEE-EEeeCCCcEEEeeCCc--ccccccc-----CcccEEEEEEeCCCCEEEEEe------------CCCeEE
Q 012007 127 YSLAASGDLL-YTGSDSKNIRVWKNLK--EFSGFKS-----NSGLVKAIIISGDSNKIFTGH------------QDGKIR 186 (473)
Q Consensus 127 ~~~~~~g~~l-~tg~~dg~i~vwd~~~--~~~~~~~-----h~~~V~~l~~s~~~~~l~s~~------------~dg~i~ 186 (473)
.+++++|+++ +++..++.|.+||... .+..+.. |...+.+++|+|+|++|+++. .++.|.
T Consensus 39 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~ 118 (337)
T 1pby_B 39 PMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVA 118 (337)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEE
T ss_pred eEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEE
Confidence 4566778765 5556688999999653 2222321 123678899999999999886 579999
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD 266 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~ 266 (473)
+||+.+++...... ....+.+++|+|++++|+++ ++.|.+||+.+
T Consensus 119 v~d~~~~~~~~~~~---------------------------------~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~ 163 (337)
T 1pby_B 119 LYDAETLSRRKAFE---------------------------------APRQITMLAWARDGSKLYGL--GRDLHVMDPEA 163 (337)
T ss_dssp EEETTTTEEEEEEE---------------------------------CCSSCCCEEECTTSSCEEEE--SSSEEEEETTT
T ss_pred EEECCCCcEEEEEe---------------------------------CCCCcceeEECCCCCEEEEe--CCeEEEEECCC
Confidence 99998765433222 33457789999999988888 68999999999
Q ss_pred CeeeEEeecCCCceeEEEEcCCC-EEEEEe-CCC-----------------------cEEEEeCcccCCCcceeeeeeec
Q 012007 267 CKCLESINAHDDAINSVVAGFDS-LVFTGS-ADG-----------------------TVKVWRRELQGKGTKHCLAQVLL 321 (473)
Q Consensus 267 ~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~-~dg-----------------------~i~vwd~~~~~~~~~~~~~~~~~ 321 (473)
++.+..+..+... ..+.++|++ .++..+ .++ .|.+||+..... ......
T Consensus 164 ~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-----~~~~~~ 237 (337)
T 1pby_B 164 GTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM-----AMREVR 237 (337)
T ss_dssp TEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE-----EEEEEE
T ss_pred CcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc-----eEeecC
Confidence 9988777654311 122567776 333322 222 468899874321 123345
Q ss_pred cCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCcee
Q 012007 322 KHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHS 401 (473)
Q Consensus 322 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 401 (473)
.+...+.+++|+|++++++++ ++.|.+||+.+.........++.....++++++++|++++.++.|.+||+.++ +
T Consensus 238 ~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~---~ 312 (337)
T 1pby_B 238 IMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL---E 312 (337)
T ss_dssp ECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC---C
T ss_pred CCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCC---c
Confidence 566788899999999999988 79999999987654433333444455677888999999999999999999884 4
Q ss_pred EEEEecC
Q 012007 402 CLAVLTG 408 (473)
Q Consensus 402 ~~~~~~~ 408 (473)
.+..+..
T Consensus 313 ~~~~~~~ 319 (337)
T 1pby_B 313 KKGQVDL 319 (337)
T ss_dssp EEEEEEC
T ss_pred EEEEEEc
Confidence 4444443
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.6e-18 Score=158.82 Aligned_cols=245 Identities=11% Similarity=0.157 Sum_probs=157.5
Q ss_pred EEEEecCCEEEEeeC---CCcEEEeeCCc----cccccccCcccEEEEEEeCCCCEEEEEe-CCCeEEEEeCCCC-Ceee
Q 012007 127 YSLAASGDLLYTGSD---SKNIRVWKNLK----EFSGFKSNSGLVKAIIISGDSNKIFTGH-QDGKIRIWKVSRK-NASV 197 (473)
Q Consensus 127 ~~~~~~g~~l~tg~~---dg~i~vwd~~~----~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~vwd~~~~-~~~~ 197 (473)
.+++++|+ |++++. ++.|++|++.. .+..+..+...+..++|+|+|++|++++ .++.|.+|++... ....
T Consensus 45 ~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~ 123 (347)
T 3hfq_A 45 LALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTL 123 (347)
T ss_dssp EEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEE
T ss_pred EEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeee
Confidence 45667788 555543 68999999642 2333445677899999999999999888 6799999999643 2221
Q ss_pred EEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC-CCeee--EEee
Q 012007 198 HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS-DCKCL--ESIN 274 (473)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~-~~~~~--~~~~ 274 (473)
......... .+ . ...+...+.+++|+|+++++++...++.|.+|++. +++.. ..+.
T Consensus 124 ~~~~~~~~~---------~p-----------~-~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~ 182 (347)
T 3hfq_A 124 TDTVQHSGH---------GP-----------R-PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT 182 (347)
T ss_dssp EEEEECCCC---------CS-----------S-TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE
T ss_pred cceeecCCC---------CC-----------C-ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE
Confidence 111110000 00 0 00133458899999999966666678899999998 55432 2222
Q ss_pred cC-CCceeEEEEcCCC-EEE-EEeCCCcEEEEeCcccCCCcceeeeeeeccCC------ccEEEEEEccCCCEEE-EeCC
Q 012007 275 AH-DDAINSVVAGFDS-LVF-TGSADGTVKVWRRELQGKGTKHCLAQVLLKHE------NAVTALAVNQESAVVY-CGSS 344 (473)
Q Consensus 275 ~~-~~~v~~l~~~~~~-~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------~~v~~l~~~~~~~~l~-~~~~ 344 (473)
.+ ......++|+|++ +++ +...++.|.+|++..... ............ ..+..++|+|+|++|+ +...
T Consensus 183 ~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~ 260 (347)
T 3hfq_A 183 MEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG--AFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG 260 (347)
T ss_dssp CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT--EEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET
T ss_pred cCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC--ceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC
Confidence 22 3367889999998 344 456789999999874211 111112222111 4588999999999875 4556
Q ss_pred CCcEEEEecCCcc--cccceeecCc--ceEEEEEecCCEEEEEeCC-CcEEEEecC
Q 012007 345 DGLVNFWECEKHL--SHGGVLRGHK--MAVLCLAAAGNLVFSGSAD-RNICLWRRE 395 (473)
Q Consensus 345 dg~i~iwd~~~~~--~~~~~~~~~~--~~v~~~~~~~~~l~s~~~d-g~i~iwd~~ 395 (473)
++.|.+|++.... ........+. ..-.+++++|++|++++.+ +.|.+|+++
T Consensus 261 ~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 261 YNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp TTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 8999999987321 2222233322 3346677889988888765 899999654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.82 E-value=4e-18 Score=162.86 Aligned_cols=284 Identities=8% Similarity=0.003 Sum_probs=182.3
Q ss_pred eeeeeeecccEE-------EEEecCCEEEEeeC-CCc--EEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCC
Q 012007 116 IGSIVRKEGHIY-------SLAASGDLLYTGSD-SKN--IRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183 (473)
Q Consensus 116 ~~~l~~h~~~V~-------~~~~~g~~l~tg~~-dg~--i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 183 (473)
+..|..|.+.+. ++++||++|+.++. +|. |.+||.. +......++...+..++|+|||++|+.++.++
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~ 102 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGR 102 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTT
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCC
Confidence 444555555444 37788999888887 674 7777865 22333445555566788999999999999999
Q ss_pred eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE--EEcCCCCEEEEE--------
Q 012007 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL--SLNAEQGLLYSG-------- 253 (473)
Q Consensus 184 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l--~~~~~~~~l~s~-------- 253 (473)
.|++||+.+++....... +...+... .+++++.+++..
T Consensus 103 ~l~~~d~~~g~~~~~~~~--------------------------------~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~ 150 (388)
T 3pe7_A 103 NLMRVDLATLEENVVYQV--------------------------------PAEWVGYGTWVANSDCTKLVGIEIRREDWV 150 (388)
T ss_dssp EEEEEETTTCCEEEEEEC--------------------------------CTTEEEEEEEEECTTSSEEEEEEEEGGGCC
T ss_pred eEEEEECCCCcceeeeec--------------------------------hhhcccccceeECCCCCeeccccccCcccc
Confidence 999999998865433321 22333222 347888887743
Q ss_pred --------------eCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcC-CC-EEEEEeCC------CcEEEEeCcccCCC
Q 012007 254 --------------SWDKTLKVWRISDCKCLESINAHDDAINSVVAGF-DS-LVFTGSAD------GTVKVWRRELQGKG 311 (473)
Q Consensus 254 --------------s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d------g~i~vwd~~~~~~~ 311 (473)
..+..|.+||+.+++... +..+...+..+.|+| ++ .|+.+..+ ..|.++|.....
T Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-- 227 (388)
T 3pe7_A 151 PLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-- 227 (388)
T ss_dssp CCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC--
T ss_pred cccccchhhhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc--
Confidence 244679999999886544 444666789999999 87 55555543 367777765221
Q ss_pred cceeeeeeeccCC--ccEEEEEEccCCCEEEEeCC-CC----cEEEEecCCccccc-ceeecCcc-----eEEEEEecCC
Q 012007 312 TKHCLAQVLLKHE--NAVTALAVNQESAVVYCGSS-DG----LVNFWECEKHLSHG-GVLRGHKM-----AVLCLAAAGN 378 (473)
Q Consensus 312 ~~~~~~~~~~~~~--~~v~~l~~~~~~~~l~~~~~-dg----~i~iwd~~~~~~~~-~~~~~~~~-----~v~~~~~~~~ 378 (473)
...+..+. ..+..++|+|+|+.|+..+. ++ .|++||+.++.... ....++.. .-..++++|+
T Consensus 228 -----~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~ 302 (388)
T 3pe7_A 228 -----MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGS 302 (388)
T ss_dssp -----CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEEC
T ss_pred -----eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCC
Confidence 12222233 35788999999987755332 22 39999998764321 11222110 1126889998
Q ss_pred EEEEE---------eCCCcEEEEecCCCCceeEEEEecCCCC-----------ceeEEEEecCCCCCcccccCCCccEEE
Q 012007 379 LVFSG---------SADRNICLWRREESGAHSCLAVLTGHTG-----------PVKCLAVEEDRDHDHEYHQKGDQRWTV 438 (473)
Q Consensus 379 ~l~s~---------~~dg~i~iwd~~~~~~~~~~~~~~~h~~-----------~V~~l~~~~~~~~~~~~~~~~~~~~~l 438 (473)
.|+.. ..+..|++||+.++. +..+..|.. .+.+++|+||++. ++
T Consensus 303 ~l~~~~~~~~~~~~~~~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~------------l~ 366 (388)
T 3pe7_A 303 DAPVDVQDDSGYKIENDPFLYVFNMKNGT----QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQ------------IL 366 (388)
T ss_dssp CC------------CCCCEEEEEETTTTE----EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSE------------EE
T ss_pred cceeEeeeccccccCCCCEEEEEeccCCc----eEEeccccCcccccccccccCCCCccCCCCCCE------------EE
Confidence 77754 456689999998732 233344444 5788999999983 45
Q ss_pred EEeeCCCcEEEEEcCCC
Q 012007 439 YSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 439 ~s~s~Dg~v~iW~i~~~ 455 (473)
+++..+|...||.+.-.
T Consensus 367 ~~s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 367 FTSDVHGKPALYLATLP 383 (388)
T ss_dssp EEECTTSSCEEEEEECC
T ss_pred EEecCCCceeEEEEECC
Confidence 55556888888877543
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-18 Score=163.02 Aligned_cols=245 Identities=9% Similarity=0.089 Sum_probs=166.6
Q ss_pred EEecCCEEEEeeCCCcEEEeeCCc--cccccccCc-ccEEEEEEeCCCCEEE-EEeCCCeEEEEeCCCCCeeeEEeeccc
Q 012007 129 LAASGDLLYTGSDSKNIRVWKNLK--EFSGFKSNS-GLVKAIIISGDSNKIF-TGHQDGKIRIWKVSRKNASVHKRVGSL 204 (473)
Q Consensus 129 ~~~~g~~l~tg~~dg~i~vwd~~~--~~~~~~~h~-~~V~~l~~s~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~ 204 (473)
++.++.++++++.++.|++||... .+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++..........
T Consensus 7 ~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~ 86 (349)
T 1jmx_B 7 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV 86 (349)
T ss_dssp CCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS
T ss_pred ccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccc
Confidence 345677899999999999999753 333443332 2578999999998765 445689999999988765433322100
Q ss_pred cccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC------------CCEEEEEcCCCee---
Q 012007 205 PTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD------------KTLKVWRISDCKC--- 269 (473)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d------------g~v~vwd~~~~~~--- 269 (473)
+. .....+.+++|+|++++|++++.+ +.|.+||+.+++.
T Consensus 87 ~~--------------------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 140 (349)
T 1jmx_B 87 PG--------------------------EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP 140 (349)
T ss_dssp TT--------------------------EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC
T ss_pred cc--------------------------cccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccce
Confidence 00 012347789999999999999865 8999999988543
Q ss_pred eEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeee-------------------------------
Q 012007 270 LESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQ------------------------------- 318 (473)
Q Consensus 270 ~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------------------------------- 318 (473)
+..+.. ...+.++++++++.+++++ +.|.+||+..+..........
T Consensus 141 ~~~~~~-~~~~~~~~~s~dg~l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (349)
T 1jmx_B 141 VRTFPM-PRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA 217 (349)
T ss_dssp SEEEEC-CSSCCCEEECTTSCEEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE
T ss_pred eeeccC-CCcccceeECCCCcEEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeee
Confidence 334443 3468899999998665554 349999986432110000000
Q ss_pred -------------------------------eeccCCccEEEEEEcc-CCCEEEEeCCCCcEEEEecCCcccccceeecC
Q 012007 319 -------------------------------VLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGH 366 (473)
Q Consensus 319 -------------------------------~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 366 (473)
....+...+..++|+| ++++++++ ++.|.+||+.+.........++
T Consensus 218 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~ 295 (349)
T 1jmx_B 218 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH 295 (349)
T ss_dssp EC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS
T ss_pred ecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC
Confidence 0001122456788899 99999988 8899999998765443333444
Q ss_pred cceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEec
Q 012007 367 KMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLT 407 (473)
Q Consensus 367 ~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 407 (473)
.....++++++++|++++.++.|.+||+.+ .+.+..+.
T Consensus 296 ~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~---~~~~~~~~ 333 (349)
T 1jmx_B 296 TYYCVAFDKKGDKLYLGGTFNDLAVFNPDT---LEKVKNIK 333 (349)
T ss_dssp CCCEEEECSSSSCEEEESBSSEEEEEETTT---TEEEEEEE
T ss_pred CccceEECCCCCEEEEecCCCeEEEEeccc---cceeeeee
Confidence 455567788898888888899999999988 34555544
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.6e-19 Score=183.55 Aligned_cols=275 Identities=8% Similarity=0.029 Sum_probs=180.7
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCCc--cccccccCcc---cEEEEEEeCCCCEEEEEeC---------CCeEEEEeCCCC
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSG---LVKAIIISGDSNKIFTGHQ---------DGKIRIWKVSRK 193 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~~--~~~~~~~h~~---~V~~l~~s~~~~~l~s~~~---------dg~i~vwd~~~~ 193 (473)
+++++|++++++ .|+.|++||... ....+.+|.. .|.+++|+|||++|+.++. ++.|++||+.++
T Consensus 22 ~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g 100 (719)
T 1z68_A 22 NWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG 100 (719)
T ss_dssp EESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred EECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC
Confidence 566778666655 589999999753 2333333333 3999999999999998876 789999999887
Q ss_pred CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEe
Q 012007 194 NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI 273 (473)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 273 (473)
+...... ....+..++|+|||+.|+.+. ++.|++||+.+++.....
T Consensus 101 ~~~~~~~---------------------------------l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~ 146 (719)
T 1z68_A 101 EFVRGNE---------------------------------LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQIT 146 (719)
T ss_dssp EECCSSC---------------------------------CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECC
T ss_pred cccccee---------------------------------cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEe
Confidence 5411000 124577899999999999986 789999999888765433
Q ss_pred -ecCCCce-----------------eEEEEcCCC-EEEEEeCCC----------------------------------cE
Q 012007 274 -NAHDDAI-----------------NSVVAGFDS-LVFTGSADG----------------------------------TV 300 (473)
Q Consensus 274 -~~~~~~v-----------------~~l~~~~~~-~l~s~~~dg----------------------------------~i 300 (473)
.++...| .++.|+|++ .|++++.|. .|
T Consensus 147 ~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l 226 (719)
T 1z68_A 147 FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRI 226 (719)
T ss_dssp CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEE
T ss_pred cCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEE
Confidence 2222222 489999998 777776542 78
Q ss_pred EEEeCcccCCCcceeee--eeeccCCccEEEEEEccCCCEEEEeCCC----CcEEEEe----cCCccccccee---ecCc
Q 012007 301 KVWRRELQGKGTKHCLA--QVLLKHENAVTALAVNQESAVVYCGSSD----GLVNFWE----CEKHLSHGGVL---RGHK 367 (473)
Q Consensus 301 ~vwd~~~~~~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~~---~~~~ 367 (473)
++||+..+.......+. ..+..|...+..++|+||++++++.... ..|.+|| ..++....... .+|.
T Consensus 227 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~ 306 (719)
T 1z68_A 227 FIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRT 306 (719)
T ss_dssp EEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSS
T ss_pred EEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCC
Confidence 89998643210000110 1234688889999999998877764322 2488899 76654332221 3444
Q ss_pred ce-------EEEEEecCCEEEE--EeCCC--cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccE
Q 012007 368 MA-------VLCLAAAGNLVFS--GSADR--NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRW 436 (473)
Q Consensus 368 ~~-------v~~~~~~~~~l~s--~~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~ 436 (473)
.. ...++++|+.|+. +..+| .|.+|++.++. ...+..+...|..+.+. ++..
T Consensus 307 ~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~----~~~lt~~~~~v~~~~~~-d~~~------------ 369 (719)
T 1z68_A 307 GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN----AIQITSGKWEAINIFRV-TQDS------------ 369 (719)
T ss_dssp SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT----CEECSCSSSCEEEEEEE-CSSE------------
T ss_pred ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc----eEecccCceEEEEEEEE-eCCE------------
Confidence 33 3467888885543 44555 46666766532 34555566678888777 6662
Q ss_pred EEEEeeC----CCcEEEEEcCC
Q 012007 437 TVYSGSL----DKSVKVWRVSE 454 (473)
Q Consensus 437 ~l~s~s~----Dg~v~iW~i~~ 454 (473)
+++++.. ++.+++|.+..
T Consensus 370 i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 370 LFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EEEEESCGGGCTTCBEEEEEEC
T ss_pred EEEEEecCCCCCceEEEEEEeC
Confidence 4455544 58899999864
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-17 Score=156.35 Aligned_cols=271 Identities=10% Similarity=0.138 Sum_probs=167.5
Q ss_pred EEEEecCCEEEEeeCC----CcEEEeeCCc------cccccccCcccEEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCe
Q 012007 127 YSLAASGDLLYTGSDS----KNIRVWKNLK------EFSGFKSNSGLVKAIIISGDSNKIFTGH-QDGKIRIWKVSRKNA 195 (473)
Q Consensus 127 ~~~~~~g~~l~tg~~d----g~i~vwd~~~------~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~vwd~~~~~~ 195 (473)
.+++++|++|++++.+ +.|.+|++.. .+.....+......+++ ++++|++++ .++.|.+|++.....
T Consensus 55 l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~ 132 (361)
T 3scy_A 55 LIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGA 132 (361)
T ss_dssp EEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSC
T ss_pred EEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCc
Confidence 5677789999999886 7999997532 12233335566778888 788887776 578999999975432
Q ss_pred eeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCCee-----
Q 012007 196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKC----- 269 (473)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~----- 269 (473)
....... ... ..........+...+.+++|+|++++|++++ .++.|.+|++.....
T Consensus 133 ~~~~~~~--------~~~----------~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~ 194 (361)
T 3scy_A 133 LLPASDV--------IEF----------KGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKE 194 (361)
T ss_dssp BCSCSEE--------EEC----------CCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCC
T ss_pred Cccccee--------EEc----------cCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCccccc
Confidence 2110000 000 0000000001344578899999999776665 478999999875431
Q ss_pred -e-------EEeecCCCceeEEEEcCCC-EEEEEe-CCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEE
Q 012007 270 -L-------ESINAHDDAINSVVAGFDS-LVFTGS-ADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVV 339 (473)
Q Consensus 270 -~-------~~~~~~~~~v~~l~~~~~~-~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l 339 (473)
+ .....+......++|+|++ ++++++ .++.|.+|++..+.. ...........+......++|+|+|++|
T Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~-~~~~~~~~~~~~~~~~~~i~~spdg~~l 273 (361)
T 3scy_A 195 KFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML-DEIQTVAADTVNAQGSGDIHLSPDGKYL 273 (361)
T ss_dssp CCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE-EEEEEEESCSSCCCCEEEEEECTTSSEE
T ss_pred ceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce-EEeEEEecCCCCCCCcccEEECCCCCEE
Confidence 1 1122345567899999998 566555 689999999873211 1111112223344567899999999988
Q ss_pred EEeCCC--CcEEEEecC--Ccc-cccceee-cCcceEEEEEecCCEEEEEe-CCCcEEEEecCCCCceeEEEEe-cCCCC
Q 012007 340 YCGSSD--GLVNFWECE--KHL-SHGGVLR-GHKMAVLCLAAAGNLVFSGS-ADRNICLWRREESGAHSCLAVL-TGHTG 411 (473)
Q Consensus 340 ~~~~~d--g~i~iwd~~--~~~-~~~~~~~-~~~~~v~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-~~h~~ 411 (473)
+++..+ +.|.+|++. ++. ....... +....-.+++++|++|++++ .++.|.+|+++.. ..+..... ..+..
T Consensus 274 ~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~-~g~~~~~~~~~~~~ 352 (361)
T 3scy_A 274 YASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQA-TGLLTDIKKDIKVD 352 (361)
T ss_dssp EEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTT-TCCEEECSCCEECS
T ss_pred EEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECC-CCcEeecceeeeCC
Confidence 776654 899999986 222 1111222 22334467788899888887 6789999766531 12333222 12345
Q ss_pred ceeEEEEe
Q 012007 412 PVKCLAVE 419 (473)
Q Consensus 412 ~V~~l~~~ 419 (473)
.+.||+|.
T Consensus 353 ~p~~v~~~ 360 (361)
T 3scy_A 353 KPVCLKFV 360 (361)
T ss_dssp SEEEEEEE
T ss_pred CCeEEEEc
Confidence 68888886
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.80 E-value=8.8e-19 Score=176.83 Aligned_cols=228 Identities=8% Similarity=0.023 Sum_probs=163.6
Q ss_pred cccEEEEEEeCCCCEEEEEeC-CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeecc-CCe
Q 012007 161 SGLVKAIIISGDSNKIFTGHQ-DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY-DAV 238 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 238 (473)
..+|.+++|+|||++||.++. ||+++||++.+++..... .|. ..+
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt---------------------------------~~~~~~~ 67 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLN---------------------------------REPINSV 67 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECC---------------------------------SSCCSEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeee---------------------------------ccccccc
Confidence 567999999999999999887 999999998655422111 144 578
Q ss_pred eEEEEcCCCCEEEEEeC---CCCEEEEEcCC---CeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCC
Q 012007 239 SCLSLNAEQGLLYSGSW---DKTLKVWRISD---CKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGK 310 (473)
Q Consensus 239 ~~l~~~~~~~~l~s~s~---dg~v~vwd~~~---~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~ 310 (473)
..++|+|+ +++++++. +....+|.+.. +... .+.... .+....|++++ .+++.+.++.+.+||+..+.
T Consensus 68 ~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~- 143 (582)
T 3o4h_A 68 LDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGG- 143 (582)
T ss_dssp CEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTE-
T ss_pred ccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCc-
Confidence 99999999 78887775 45566665533 3222 332222 23355666665 55555555666699986331
Q ss_pred CcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC----CcEEEEecCCcccccceeecCcceE--EEEEecCCEEEEEe
Q 012007 311 GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD----GLVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGS 384 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~ 384 (473)
..... .+.. .+++|+|||++|++++.+ +.|++||+.++... .+..|...+ .+++|||++|+++.
T Consensus 144 -----~~~l~-~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~--~l~~~~~~~~~~~~SpDG~~l~~~~ 213 (582)
T 3o4h_A 144 -----LRELA-RLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR--VFDSGEGSFSSASISPGMKVTAGLE 213 (582)
T ss_dssp -----EEEEE-EESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE--EECCSSCEEEEEEECTTSCEEEEEE
T ss_pred -----EEEee-cCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce--EeecCCCccccceECCCCCEEEEcc
Confidence 11112 2222 789999999999988776 78999998875443 455666555 55677899999888
Q ss_pred CCC--cEEEEecCCCCceeEEEEecCCCCceeEEE--------EecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 385 ADR--NICLWRREESGAHSCLAVLTGHTGPVKCLA--------VEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 385 ~dg--~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~--------~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
.++ .|++||+.++ ... .+.+|...+..++ |+||+. ++++++.||.+++|++
T Consensus 214 ~~~~~~i~~~d~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~-------------~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 214 TAREARLVTVDPRDG---SVE-DLELPSKDFSSYRPTAITWLGYLPDGR-------------LAVVARREGRSAVFID 274 (582)
T ss_dssp CSSCEEEEEECTTTC---CEE-ECCCSCSHHHHHCCSEEEEEEECTTSC-------------EEEEEEETTEEEEEET
T ss_pred CCCeeEEEEEcCCCC---cEE-EccCCCcChhhhhhccccceeEcCCCc-------------EEEEEEcCCcEEEEEE
Confidence 888 8999999873 334 6678888888788 999996 8999999999999999
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.4e-18 Score=176.16 Aligned_cols=286 Identities=9% Similarity=-0.000 Sum_probs=180.8
Q ss_pred EEEEEecCCEEEEeeC---------CCcEEEeeCCccccc-cccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCe
Q 012007 126 IYSLAASGDLLYTGSD---------SKNIRVWKNLKEFSG-FKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNA 195 (473)
Q Consensus 126 V~~~~~~g~~l~tg~~---------dg~i~vwd~~~~~~~-~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 195 (473)
-.++++||++|++++. ++.|++||+...... ...-...+..++|+|||++|+.+. ++.|++|++.+++.
T Consensus 64 ~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~ 142 (719)
T 1z68_A 64 NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPP 142 (719)
T ss_dssp EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCC
T ss_pred eEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCc
Confidence 4556778999998876 789999997633210 011135689999999999999885 78999999988764
Q ss_pred eeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCC---------eeEEEEcCCCCEEEEEeCCC---------
Q 012007 196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA---------VSCLSLNAEQGLLYSGSWDK--------- 257 (473)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------v~~l~~~~~~~~l~s~s~dg--------- 257 (473)
........ ...+..++.+. ..+++|+|||++|++++.|.
T Consensus 143 ~~l~~~~~-----------------------~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~ 199 (719)
T 1z68_A 143 FQITFNGR-----------------------ENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYS 199 (719)
T ss_dssp EECCCCCB-----------------------TTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEE
T ss_pred EEEecCCC-----------------------cCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEee
Confidence 32111000 00011123222 25899999999999988652
Q ss_pred -------------------------CEEEEEcCCCeee--------EEeecCCCceeEEEEcCCCEEE-EEeCC----Cc
Q 012007 258 -------------------------TLKVWRISDCKCL--------ESINAHDDAINSVVAGFDSLVF-TGSAD----GT 299 (473)
Q Consensus 258 -------------------------~v~vwd~~~~~~~--------~~~~~~~~~v~~l~~~~~~~l~-s~~~d----g~ 299 (473)
.|++||+.+++.. ..+..|...+..++|+|++.++ +.... ..
T Consensus 200 ~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~ 279 (719)
T 1z68_A 200 YYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSV 279 (719)
T ss_dssp ECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEE
T ss_pred ccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEE
Confidence 7889999887653 1233578889999999999544 43322 24
Q ss_pred EEEEe----CcccCCCcceeeeeee----ccCCccEE-----EEEEccCCCEEEE--eCCCC--cEEEEecCCcccccce
Q 012007 300 VKVWR----RELQGKGTKHCLAQVL----LKHENAVT-----ALAVNQESAVVYC--GSSDG--LVNFWECEKHLSHGGV 362 (473)
Q Consensus 300 i~vwd----~~~~~~~~~~~~~~~~----~~~~~~v~-----~l~~~~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~ 362 (473)
|.+|| +..+. ..... ..|...+. .++|+|+|+.|+. ...+| .|.+||+.++. ...
T Consensus 280 l~~~d~~~~~~~g~------~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--~~~ 351 (719)
T 1z68_A 280 LSICDFREDWQTWD------CPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--AIQ 351 (719)
T ss_dssp EEEEEECSSSSSEE------CCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT--CEE
T ss_pred EEEEcccCCCCCCc------eEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc--eEe
Confidence 88888 54322 11222 35666665 7899999985543 55555 46667776543 223
Q ss_pred eecCcceEE--EEEecCCEEEEEeCC-----CcEEEEecCCC-Cc--eeEEEE-ecCCCCceeEEEEecCCCCCcccccC
Q 012007 363 LRGHKMAVL--CLAAAGNLVFSGSAD-----RNICLWRREES-GA--HSCLAV-LTGHTGPVKCLAVEEDRDHDHEYHQK 431 (473)
Q Consensus 363 ~~~~~~~v~--~~~~~~~~l~s~~~d-----g~i~iwd~~~~-~~--~~~~~~-~~~h~~~V~~l~~~~~~~~~~~~~~~ 431 (473)
+..+...+. .+. +++.|+..+.+ +.+++|.+... +. ..++.. +.+|...+..+.|+|+++.
T Consensus 352 lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~------- 423 (719)
T 1z68_A 352 ITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKY------- 423 (719)
T ss_dssp CSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSS-------
T ss_pred cccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCE-------
Confidence 333333332 233 77777666654 88999988641 11 122211 2236677889999999873
Q ss_pred CCccEEEEEeeCC--CcEEEEEcCCCC
Q 012007 432 GDQRWTVYSGSLD--KSVKVWRVSEHA 456 (473)
Q Consensus 432 ~~~~~~l~s~s~D--g~v~iW~i~~~~ 456 (473)
++++++.+ ..+.+|++.+++
T Consensus 424 -----l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 424 -----YALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp -----EEEEECCBSSCEEEEECSSSCC
T ss_pred -----EEEEcCCCCCCeEEEEECCCCC
Confidence 45555544 468889887654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-16 Score=150.89 Aligned_cols=265 Identities=12% Similarity=0.123 Sum_probs=178.9
Q ss_pred CCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeC----------CCeEEEEeCCCCCeeeEEeeccccccc
Q 012007 141 DSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQ----------DGKIRIWKVSRKNASVHKRVGSLPTFK 208 (473)
Q Consensus 141 ~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~ 208 (473)
.|+.|.+||.. +.+..+..+..+ .++|+|||++|+++.. ++.|.+||..+.+...........
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~--- 103 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR--- 103 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB---
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc---
Confidence 37799999954 334455555555 8999999999999863 678999999887765444332100
Q ss_pred eeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC--CCCEEEEEcCCCeeeEE-eecCCCceeEEEE
Q 012007 209 DYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW--DKTLKVWRISDCKCLES-INAHDDAINSVVA 285 (473)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~--dg~v~vwd~~~~~~~~~-~~~~~~~v~~l~~ 285 (473)
..+......++++|+|++|+++.. ++.|.+||+.+++.+.. +.... ...+.+
T Consensus 104 -----------------------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~--~~~v~~ 158 (361)
T 2oiz_A 104 -----------------------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG--CWSVIP 158 (361)
T ss_dssp -----------------------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT--EEEEEE
T ss_pred -----------------------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC--cceeEE
Confidence 002345677999999999999874 57899999999998887 65322 223455
Q ss_pred cCCC--EEEEEeCCCcEEEEeCcccCCCcceee-eeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccc-c
Q 012007 286 GFDS--LVFTGSADGTVKVWRRELQGKGTKHCL-AQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHG-G 361 (473)
Q Consensus 286 ~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~ 361 (473)
.|++ .+++.+.||.+.+|+....++...... ...+.....+ ..+.+.+++..++..+.++.|.++|+....... .
T Consensus 159 ~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~ 237 (361)
T 2oiz_A 159 QPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDG 237 (361)
T ss_dssp CTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEE
T ss_pred cCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecc
Confidence 6654 788889999999999864222110000 0111122222 133346677777777788999999986432110 0
Q ss_pred ee------------ecCcceEEEEEecCCEEEEEeC-----------CCcEEEEecCCCCceeEEEEecCCCCceeEEEE
Q 012007 362 VL------------RGHKMAVLCLAAAGNLVFSGSA-----------DRNICLWRREESGAHSCLAVLTGHTGPVKCLAV 418 (473)
Q Consensus 362 ~~------------~~~~~~v~~~~~~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~ 418 (473)
.. .........++++++.++++.. .+.|.+||+.+ .+.+..+..+. +.+|+|
T Consensus 238 ~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t---~~~v~~i~~~~--p~~ia~ 312 (361)
T 2oiz_A 238 PWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT---KQRVARIPGRD--ALSMTI 312 (361)
T ss_dssp EEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT---TEEEEEEECTT--CCEEEE
T ss_pred cccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC---CcEEEEEecCC--eeEEEE
Confidence 00 0111123578888887777643 34799999998 57788887776 999999
Q ss_pred ecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 419 EEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
+|+++ +|++++. +.|.+||..++
T Consensus 313 spdg~-------------~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 313 DQQRN-------------LMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp ETTTT-------------EEEEECS-SCEEEEECSSS
T ss_pred CCCCC-------------EEEEeCC-CeEEEEECCCC
Confidence 99998 7777776 99999999887
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=8.7e-16 Score=140.12 Aligned_cols=247 Identities=10% Similarity=0.139 Sum_probs=167.0
Q ss_pred ccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCC
Q 012007 158 KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA 237 (473)
Q Consensus 158 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (473)
.++-..+.+++++++++++++...++.|.+||... +.......... ..++...
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~~--------------------------~~~~~~~ 78 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGK--------------------------RDSQLLY 78 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSS--------------------------STTCBSS
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEEEecccCC--------------------------CcccccC
Confidence 34566789999999999888888899999999873 32222111000 0014456
Q ss_pred eeEEEEc-CCCCEEEEEeC-CCCEEEEEcCCCeeeEEeec-CCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcc
Q 012007 238 VSCLSLN-AEQGLLYSGSW-DKTLKVWRISDCKCLESINA-HDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTK 313 (473)
Q Consensus 238 v~~l~~~-~~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~-~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~ 313 (473)
+..+++. +++.++++... ++.|.+|| .+++.+..+.. +...+.++++.+++ ++++...++.|.+||... .
T Consensus 79 p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-----~ 152 (286)
T 1q7f_A 79 PNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-----N 152 (286)
T ss_dssp EEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-----C
T ss_pred ceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-----C
Confidence 8899994 66665555533 78999999 67777776643 34578899999988 555556688999999641 1
Q ss_pred eeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceee--cCcceE--EEEEecCCEEEEEeCCC-c
Q 012007 314 HCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLR--GHKMAV--LCLAAAGNLVFSGSADR-N 388 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v--~~~~~~~~~l~s~~~dg-~ 388 (473)
.........+...+..++++++++++++...++.|++||...... ..+. ++.... ++++++|+++++...++ .
T Consensus 153 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~--~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~ 230 (286)
T 1q7f_A 153 VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYL--RQIGGEGITNYPIGVGINSNGEILIADNHNNFN 230 (286)
T ss_dssp EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEE--EEESCTTTSCSEEEEEECTTCCEEEEECSSSCE
T ss_pred EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEE--EEEccCCccCCCcEEEECCCCCEEEEeCCCCEE
Confidence 111111123445689999999999888888899999999864321 1222 212233 44556788888888776 9
Q ss_pred EEEEecCCCCceeEEEEecCCC--CceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 389 ICLWRREESGAHSCLAVLTGHT--GPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 389 i~iwd~~~~~~~~~~~~~~~h~--~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
|.+|+... ..+..+..+. ..+.+++++|++. ++++ +.|+.|++|++....+
T Consensus 231 i~~~~~~g----~~~~~~~~~~~~~~~~~i~~~~~g~-------------l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 231 LTIFTQDG----QLISALESKVKHAQCFDVALMDDGS-------------VVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp EEEECTTS----CEEEEEEESSCCSCEEEEEEETTTE-------------EEEE-ETTTEEEEEECSCCCC
T ss_pred EEEECCCC----CEEEEEcccCCCCcceeEEECCCCc-------------EEEE-CCCCeEEEEEcccccc
Confidence 99999654 3344443332 3478999999986 6666 5799999999876543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-16 Score=149.71 Aligned_cols=241 Identities=8% Similarity=0.053 Sum_probs=157.5
Q ss_pred EEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCc--ccEEEEEEeCCCCE--EEEEe-------------CCCeEEE
Q 012007 127 YSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNS--GLVKAIIISGDSNK--IFTGH-------------QDGKIRI 187 (473)
Q Consensus 127 ~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~--~~V~~l~~s~~~~~--l~s~~-------------~dg~i~v 187 (473)
.+++++|++|++++.+ .|.+|++. ..+.....+. +.+.+++|+|+|++ ++++. .+|.+.+
T Consensus 45 ~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v 123 (365)
T 1jof_A 45 MTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNV 123 (365)
T ss_dssp EEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEE
T ss_pred EEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEE
Confidence 4566789999999887 99999864 2221111111 33566899999984 55553 6899999
Q ss_pred EeCCC-CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC-CCCEEEEEcC
Q 012007 188 WKVSR-KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRIS 265 (473)
Q Consensus 188 wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg~v~vwd~~ 265 (473)
|++.. ++........ ...+...+.+++|+|+|++|+++.. ++.|++||+.
T Consensus 124 ~~~~~~g~~~~~~~~~----------------------------~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~ 175 (365)
T 1jof_A 124 FSVSETGKLEKNVQNY----------------------------EYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKL 175 (365)
T ss_dssp EEECTTCCEEEEEEEE----------------------------ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EccCCCCcCcceEeeE----------------------------EeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEEC
Confidence 99974 4322111100 0014567899999999999888764 6789999998
Q ss_pred -CCeee--EEee--cCCCceeEEEEcCCC-EEEEEe-CCCcEEEEeCcccCCCcc--eeeeeeec----cCCc------c
Q 012007 266 -DCKCL--ESIN--AHDDAINSVVAGFDS-LVFTGS-ADGTVKVWRRELQGKGTK--HCLAQVLL----KHEN------A 326 (473)
Q Consensus 266 -~~~~~--~~~~--~~~~~v~~l~~~~~~-~l~s~~-~dg~i~vwd~~~~~~~~~--~~~~~~~~----~~~~------~ 326 (473)
+++.. ..+. .|...+..++|+|++ ++++++ .++.|.+|++........ ......+. +|.. .
T Consensus 176 ~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 255 (365)
T 1jof_A 176 ASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLY 255 (365)
T ss_dssp TTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSE
T ss_pred CCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccc
Confidence 67643 3343 245678999999998 666655 478999998753111000 00111111 2222 5
Q ss_pred EEEEE-EccCCCEEEEeCCCC------cEEEEecC-Cccccc-c-eeecC--cceEEEEEe---cCCEEEEEeCC-CcEE
Q 012007 327 VTALA-VNQESAVVYCGSSDG------LVNFWECE-KHLSHG-G-VLRGH--KMAVLCLAA---AGNLVFSGSAD-RNIC 390 (473)
Q Consensus 327 v~~l~-~~~~~~~l~~~~~dg------~i~iwd~~-~~~~~~-~-~~~~~--~~~v~~~~~---~~~~l~s~~~d-g~i~ 390 (473)
+..++ |+|+|++|+++..+. .|.+|++. ++.... . ....+ ...-.+++| +|++|++++.+ +.|.
T Consensus 256 ~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~ 335 (365)
T 1jof_A 256 RADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLE 335 (365)
T ss_dssp EEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEE
T ss_pred cccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEE
Confidence 88999 999999988775432 89999986 332211 0 12212 233467889 89999998865 8999
Q ss_pred EEecCC
Q 012007 391 LWRREE 396 (473)
Q Consensus 391 iwd~~~ 396 (473)
+|+++.
T Consensus 336 v~~~~~ 341 (365)
T 1jof_A 336 IYRWKD 341 (365)
T ss_dssp EEEEET
T ss_pred EEEEch
Confidence 999986
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-15 Score=143.00 Aligned_cols=248 Identities=12% Similarity=0.101 Sum_probs=163.9
Q ss_pred cCCEEEEee---------CCCcEEEeeCCcc-ccccccCcccEEEEEEeCCCCEEEEEeCC---C--eEEEEeCCCCCee
Q 012007 132 SGDLLYTGS---------DSKNIRVWKNLKE-FSGFKSNSGLVKAIIISGDSNKIFTGHQD---G--KIRIWKVSRKNAS 196 (473)
Q Consensus 132 ~g~~l~tg~---------~dg~i~vwd~~~~-~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g--~i~vwd~~~~~~~ 196 (473)
||+.++... .++.|.+||.... ...+ ..+..++|+|||++|+.++.+ + .|.+|++.+++..
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~ 98 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK 98 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE
Confidence 888776542 2567889986532 2223 568899999999999987754 3 3778888776533
Q ss_pred eEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC--------------------
Q 012007 197 VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD-------------------- 256 (473)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d-------------------- 256 (473)
.... +.. +..++|+|+++.|+.++.+
T Consensus 99 ~l~~---------------------------------~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~ 144 (347)
T 2gop_A 99 KILE---------------------------------AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDL 144 (347)
T ss_dssp EEEE---------------------------------ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC----
T ss_pred EEEc---------------------------------CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCc
Confidence 2211 223 8899999999988888632
Q ss_pred -------CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCC-------cEEEEeCcccCCCcceeeeeeecc
Q 012007 257 -------KTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADG-------TVKVWRRELQGKGTKHCLAQVLLK 322 (473)
Q Consensus 257 -------g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg-------~i~vwd~~~~~~~~~~~~~~~~~~ 322 (473)
..|.+||+.+++.+..+.. . .+..+.|+|+++++++..++ ...+|.+. .+ .. ..+..
T Consensus 145 ~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d-~~--~~----~~l~~ 215 (347)
T 2gop_A 145 GFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE-DG--KE----EKMFE 215 (347)
T ss_dssp -----CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE-TT--EE----EEEEE
T ss_pred ccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeC-CC--ce----EEecc
Confidence 5699999998887455554 3 78899999999555555442 44566554 22 11 11222
Q ss_pred CCccEEEEEEccCCCEEEEeCCC--------CcEEEEecCCcccccceeecCcceEEE-EEe-cCCEEEEEeCCCcEEEE
Q 012007 323 HENAVTALAVNQESAVVYCGSSD--------GLVNFWECEKHLSHGGVLRGHKMAVLC-LAA-AGNLVFSGSADRNICLW 392 (473)
Q Consensus 323 ~~~~v~~l~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~v~~-~~~-~~~~l~s~~~dg~i~iw 392 (473)
+ ..+..+ +|+|+.|+.++.+ ..|.+|| ++. ......++...+.. +.+ ++ ++++++.++.++||
T Consensus 216 ~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~~~~~~~~~~~~sdg-~~~~~~~~~~~~l~ 288 (347)
T 2gop_A 216 K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKE-VMGILDEVDRGVGQAKIKDGK-VYFTLFEEGSVNLY 288 (347)
T ss_dssp E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSC-EEESSTTCCSEEEEEEEETTE-EEEEEEETTEEEEE
T ss_pred C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCc-eEeccccCCcccCCccEEcCc-EEEEEecCCcEEEE
Confidence 2 444444 9999988776643 3688888 322 22233344444443 333 56 88899999999999
Q ss_pred ecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcE-EEEEcC
Q 012007 393 RREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSV-KVWRVS 453 (473)
Q Consensus 393 d~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v-~iW~i~ 453 (473)
+.+ + .... +..+.+.|.+++|++ . ++++++.++.. .||.+.
T Consensus 289 -~~~-g--~~~~-~~~~~~~v~~~~~s~--~-------------~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 289 -IWD-G--EIKP-IAKGRHWIMGFDVDE--I-------------VVYLKETATRLRELFTWD 330 (347)
T ss_dssp -EES-S--SEEE-EECSSSEEEEEEESS--S-------------EEEEEECSSSCCEEEEES
T ss_pred -EcC-C--ceEE-EecCCCeEEeeeeeC--c-------------EEEEEcCCCChHHheEeC
Confidence 874 2 2333 334577899999999 4 77777777765 888876
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-16 Score=160.20 Aligned_cols=287 Identities=10% Similarity=0.029 Sum_probs=183.1
Q ss_pred eeeeecccEEEEEecCCEEE--Ee--eCCCcEEEeeC--CccccccccCcccEE---------EEEEe--CCCCE-EEEE
Q 012007 118 SIVRKEGHIYSLAASGDLLY--TG--SDSKNIRVWKN--LKEFSGFKSNSGLVK---------AIIIS--GDSNK-IFTG 179 (473)
Q Consensus 118 ~l~~h~~~V~~~~~~g~~l~--tg--~~dg~i~vwd~--~~~~~~~~~h~~~V~---------~l~~s--~~~~~-l~s~ 179 (473)
.+.+|...|..++++++.++ .. +.++...||.. ......+..|...+. ...|+ |||++ |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 34567788888888877444 33 34788999973 233455666666666 66676 99988 7765
Q ss_pred eC-CCeEEEEeCC--C-CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC
Q 012007 180 HQ-DGKIRIWKVS--R-KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW 255 (473)
Q Consensus 180 ~~-dg~i~vwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~ 255 (473)
+. +..|.+|++. . +....... .+. ..|...+..++|+|||+.|++++.
T Consensus 98 ~~~~~~l~~~~~~~~g~~~~~~l~~---~~~-------------------------~~~~~~~~~~~~spDg~~l~~~~~ 149 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAVPRPLTP---VSA-------------------------VGGGLRWADPVLLPERGEVWCMAE 149 (662)
T ss_dssp BTTTCCEEEECTTSTTCCCCEECSC---CCC-------------------------STTCEEEEEEEEETTTTEEEEEEE
T ss_pred ECCCCeEEEEcCCCCCCCCCEeccC---Ccc-------------------------CCCCccccCcEECCCCCEEEEEEe
Confidence 54 5667777765 2 32211000 000 004456789999999999999987
Q ss_pred C----------CCEEEEEcCC------CeeeEEee-cCCCceeEEEEcCCC-EEEEEeCC--------CcEEEEeCcccC
Q 012007 256 D----------KTLKVWRISD------CKCLESIN-AHDDAINSVVAGFDS-LVFTGSAD--------GTVKVWRRELQG 309 (473)
Q Consensus 256 d----------g~v~vwd~~~------~~~~~~~~-~~~~~v~~l~~~~~~-~l~s~~~d--------g~i~vwd~~~~~ 309 (473)
+ ..|++||+.+ ++. ..+. .+...+..+.|+|++ .|+.++.+ ..|.+||+...+
T Consensus 150 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g 228 (662)
T 3azo_A 150 EFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDG 228 (662)
T ss_dssp EECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTS
T ss_pred cccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCC
Confidence 7 5899999987 544 4444 556778889999999 67666644 379999986211
Q ss_pred CCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC--cEEEEecCCcccccceeecCcc----------eEEEEEecC
Q 012007 310 KGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG--LVNFWECEKHLSHGGVLRGHKM----------AVLCLAAAG 377 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~----------~v~~~~~~~ 377 (473)
...........+...+..++|+|||++++++..++ .|.+||+.++... .....+.. ....+++++
T Consensus 229 --~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~p~w~~~~~~~~~~~~~ 305 (662)
T 3azo_A 229 --RFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT-QLCRREEEFAGPLWTPGMRWFAPLANG 305 (662)
T ss_dssp --CEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE-ESSCCSSBSSCCCCSTTCCSEEECTTS
T ss_pred --cccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee-ecccccccccCccccccCceEeEeCCC
Confidence 01122333445578899999999999888888888 5666666443221 12222211 124455678
Q ss_pred CEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEE-EEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 378 NLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCL-AVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 378 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l-~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
.+++++.. +.++||.++... ..+..+..|...+..+ +++.+.- ++++++.+....||.+
T Consensus 306 ~~~~~~~~-~~~~l~~~d~~~--~~~~~l~~~~~~~~~~~s~~~~~~-------------~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 306 LIAVVHGK-GAAVLGILDPES--GELVDAAGPWTEWAATLTVSGTRA-------------VGVAASPRTAYEVVEL 365 (662)
T ss_dssp CEEEEEBS-SSCEEEEEETTT--TEEEECCSSCCEEEEEEEEETTEE-------------EEEEEETTEEEEEEEE
T ss_pred EEEEEEEc-CccEEEEEECCC--CcEEEecCCCCeEEEEEecCCCEE-------------EEEEcCCCCCCEEEEE
Confidence 99999998 999999554211 2256677787778777 4443322 5566666655555544
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.3e-17 Score=154.36 Aligned_cols=286 Identities=10% Similarity=0.027 Sum_probs=170.0
Q ss_pred EEEecCCEEEEeeCC---CcEEEeeCCc-cccccccCccc-EEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeec
Q 012007 128 SLAASGDLLYTGSDS---KNIRVWKNLK-EFSGFKSNSGL-VKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 128 ~~~~~g~~l~tg~~d---g~i~vwd~~~-~~~~~~~h~~~-V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 202 (473)
+++++|++|+..... ..|.+||... ....+..+... ...+.|+|||++|+.++.++.|++||+.+++........
T Consensus 42 ~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~ 121 (396)
T 3c5m_A 42 CFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVD 121 (396)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred cCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecc
Confidence 466778887766543 3677778653 22333333333 334789999999999999999999999887654333311
Q ss_pred ccc-ccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE-----eCCCCEEEEEcCCCeeeEEeecC
Q 012007 203 SLP-TFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG-----SWDKTLKVWRISDCKCLESINAH 276 (473)
Q Consensus 203 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-----s~dg~v~vwd~~~~~~~~~~~~~ 276 (473)
... .....+...... .... . ....+.|+|+++.++.+ ..+..|.+||+.+++..... .+
T Consensus 122 ~~~~~~g~~l~~~~~~-~~~~-------~------~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~ 186 (396)
T 3c5m_A 122 EEWKGYGTWVANSDCT-KLVG-------I------EILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QD 186 (396)
T ss_dssp TTEEEEEEEEECTTSS-EEEE-------E------EEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EE
T ss_pred cccCCCCCEEEeccCC-cccc-------c------cccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cC
Confidence 100 000000000000 0000 0 00113577888877654 35678999999888765544 46
Q ss_pred CCceeEEEEcC-CC-EEEEEeCC------CcEEEEeCcccCCCcceeeeeeeccC--CccEEEEEEccCCCEEEEeCCC-
Q 012007 277 DDAINSVVAGF-DS-LVFTGSAD------GTVKVWRRELQGKGTKHCLAQVLLKH--ENAVTALAVNQESAVVYCGSSD- 345 (473)
Q Consensus 277 ~~~v~~l~~~~-~~-~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~--~~~v~~l~~~~~~~~l~~~~~d- 345 (473)
...+..+.|+| ++ .|+..+.+ ..|.+||+.... . ..+..+ ...+..++|+|+|++|+..+.+
T Consensus 187 ~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~------~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (396)
T 3c5m_A 187 TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN------V-RKIKEHAEGESCTHEFWIPDGSAMAYVSYFK 259 (396)
T ss_dssp SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC------C-EESSCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc------e-eEeeccCCCccccceEECCCCCEEEEEecCC
Confidence 67788999999 56 45555443 357888875221 1 111122 3358889999999977766443
Q ss_pred ----CcEEEEecCCcccccceeecCcceEEEEEe-cCCEEEEEe----------------CCCcEEEEecCCCCceeEEE
Q 012007 346 ----GLVNFWECEKHLSHGGVLRGHKMAVLCLAA-AGNLVFSGS----------------ADRNICLWRREESGAHSCLA 404 (473)
Q Consensus 346 ----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~----------------~dg~i~iwd~~~~~~~~~~~ 404 (473)
+.|++||+.++.... ........ ..+++ +|++++.++ .+..|++||+.++.. ..
T Consensus 260 ~~~~~~l~~~d~~~g~~~~-l~~~~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~-- 334 (396)
T 3c5m_A 260 GQTDRVIYKANPETLENEE-VMVMPPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-QK-- 334 (396)
T ss_dssp TTCCEEEEEECTTTCCEEE-EEECCSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-CE--
T ss_pred CCccceEEEEECCCCCeEE-eeeCCCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-EE--
Confidence 449999997654321 11111112 67888 999888765 347899999987432 22
Q ss_pred EecCCCC-----------ceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 405 VLTGHTG-----------PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 405 ~~~~h~~-----------~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
+..+.. .+..++|+|+++. +++++..++...||.+.
T Consensus 335 -l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~------------l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 335 -LCKHSTSWDVLDGDRQITHPHPSFTPNDDG------------VLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp -EEECCCCCCCBTTBSSTTCCCCEECTTSSE------------EEEEECTTSSCEEEEEE
T ss_pred -ccCCCCccccccccccCCCCCceEccCCCe------------EEEEecCCCCceEEEEE
Confidence 223333 2567899999872 33444456666666654
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-16 Score=160.32 Aligned_cols=225 Identities=10% Similarity=0.036 Sum_probs=152.9
Q ss_pred ecCCE-EEEeeC-CCcEEEeeCC----cccccccc-----CcccEEEEEEeCCCCEEEEEeCC----------CeEEEEe
Q 012007 131 ASGDL-LYTGSD-SKNIRVWKNL----KEFSGFKS-----NSGLVKAIIISGDSNKIFTGHQD----------GKIRIWK 189 (473)
Q Consensus 131 ~~g~~-l~tg~~-dg~i~vwd~~----~~~~~~~~-----h~~~V~~l~~s~~~~~l~s~~~d----------g~i~vwd 189 (473)
|||+. |+.++. +..|.+|+.. .....+.. |...+..++|+|||++|+.++.| ..|++||
T Consensus 88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~ 167 (662)
T 3azo_A 88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVP 167 (662)
T ss_dssp SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEE
T ss_pred cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEE
Confidence 78887 666554 6677777865 55555655 67789999999999999998877 5899999
Q ss_pred CCC------CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCC------
Q 012007 190 VSR------KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDK------ 257 (473)
Q Consensus 190 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg------ 257 (473)
+.+ +...... . .+...+..++|+|||++|+.++.++
T Consensus 168 ~~~~~~~~~~~~~~l~--~------------------------------~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~ 215 (662)
T 3azo_A 168 LDGSAAADRSAVRELS--D------------------------------DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWE 215 (662)
T ss_dssp TTSTTTTCGGGSEESS--C------------------------------SCSSEECCCEECTTSSEEEEEEECTTCCTTT
T ss_pred CCCCccccCCceeEEE--e------------------------------cCCCcccCceECCCCCEEEEEECCCCCCCCC
Confidence 987 3321110 0 1445677889999999999887553
Q ss_pred --CEEEEEcC-CC---eeeEEeecCCCceeEEEEcCCC-EEEEEeCCCc--EEEEeCcccCCCcceeeeeeeccCCcc--
Q 012007 258 --TLKVWRIS-DC---KCLESINAHDDAINSVVAGFDS-LVFTGSADGT--VKVWRRELQGKGTKHCLAQVLLKHENA-- 326 (473)
Q Consensus 258 --~v~vwd~~-~~---~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~-- 326 (473)
.|++||+. ++ +.......+...+..+.|+|++ +++++..++. |.+||+..+. .......+...
T Consensus 216 ~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~------~~~l~~~~~~~~~ 289 (662)
T 3azo_A 216 GTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA------ATQLCRREEEFAG 289 (662)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC------EEESSCCSSBSSC
T ss_pred CcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc------eeecccccccccC
Confidence 79999998 57 4444445567889999999998 6677777884 5555543211 11111122111
Q ss_pred ------EEEEEEccCCCEEEEeCCCCcEEEE--ecCCcccccceeecCcceEEEE-EecCCEEE--EEeCCCc--EEEEe
Q 012007 327 ------VTALAVNQESAVVYCGSSDGLVNFW--ECEKHLSHGGVLRGHKMAVLCL-AAAGNLVF--SGSADRN--ICLWR 393 (473)
Q Consensus 327 ------v~~l~~~~~~~~l~~~~~dg~i~iw--d~~~~~~~~~~~~~~~~~v~~~-~~~~~~l~--s~~~dg~--i~iwd 393 (473)
+..++|++++++++++.. +.++|| |+.++. ...+..+...+..+ ++++..++ +++.+.. |.+||
T Consensus 290 p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d 366 (662)
T 3azo_A 290 PLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE--LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELD 366 (662)
T ss_dssp CCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE--EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEE
T ss_pred ccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc--EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEE
Confidence 567899999999999998 999999 544433 23455666677777 88876433 3444544 55556
Q ss_pred cCC
Q 012007 394 REE 396 (473)
Q Consensus 394 ~~~ 396 (473)
+.+
T Consensus 367 ~~~ 369 (662)
T 3azo_A 367 TVT 369 (662)
T ss_dssp TTT
T ss_pred CCC
Confidence 555
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-15 Score=140.11 Aligned_cols=199 Identities=9% Similarity=0.054 Sum_probs=137.9
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe-eeEEe---------ecCCCceeEEEEcC-CC-EEEEEe-CCCcE
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK-CLESI---------NAHDDAINSVVAGF-DS-LVFTGS-ADGTV 300 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~-~~~~~---------~~~~~~v~~l~~~~-~~-~l~s~~-~dg~i 300 (473)
+......++++++++++++...++.|++||..... .+..+ ..+......+++.+ ++ ++++.+ .++.|
T Consensus 89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I 168 (329)
T 3fvz_A 89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI 168 (329)
T ss_dssp TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence 44568899999999988888888999999975442 45555 23445688999998 66 445554 58999
Q ss_pred EEEeCcccCCCcceeeeeeec----------cCCccEEEEEEccC-CCEEEEeCCCCcEEEEecCCccccccee-ecCcc
Q 012007 301 KVWRRELQGKGTKHCLAQVLL----------KHENAVTALAVNQE-SAVVYCGSSDGLVNFWECEKHLSHGGVL-RGHKM 368 (473)
Q Consensus 301 ~vwd~~~~~~~~~~~~~~~~~----------~~~~~v~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~ 368 (473)
++|+... . ....+. .+......|+++|+ +.++++...++.|++||..++....... ..+..
T Consensus 169 ~~~~~~g-~------~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~ 241 (329)
T 3fvz_A 169 VQFSPSG-K------FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGR 241 (329)
T ss_dssp EEECTTS-C------EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTT
T ss_pred EEEcCCC-C------EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCC
Confidence 9999531 1 111111 12234889999998 7778888889999999998543332211 12333
Q ss_pred eEEEE--Ee------cCCEEEEEeCCCcEEEEecCCCCceeEEEEe---cCCCCceeEEEEecCCCCCcccccCCCccEE
Q 012007 369 AVLCL--AA------AGNLVFSGSADRNICLWRREESGAHSCLAVL---TGHTGPVKCLAVEEDRDHDHEYHQKGDQRWT 437 (473)
Q Consensus 369 ~v~~~--~~------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~ 437 (473)
.+..+ .+ +|+.+++...+..|++|+..++ +.+..+ .++...+.+|+++|++. +
T Consensus 242 ~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~p~~ia~~~dG~-------------l 305 (329)
T 3fvz_A 242 NVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSG---EIIDVFKPVRKHFDMPHDIVASEDGT-------------V 305 (329)
T ss_dssp CEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTC---CEEEEECCSSSCCSSEEEEEECTTSE-------------E
T ss_pred CcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCC---eEEEEEcCCCCccCCeeEEEECCCCC-------------E
Confidence 33333 33 3444444445568999999884 555555 46777899999999996 8
Q ss_pred EEEeeCCCcEEEEEcCCC
Q 012007 438 VYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 438 l~s~s~Dg~v~iW~i~~~ 455 (473)
+++...++.|++|++...
T Consensus 306 yvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 306 YIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EEEESSSCCEEEEEEEEC
T ss_pred EEEECCCCEEEEEeCCcc
Confidence 899999999999998753
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-16 Score=163.89 Aligned_cols=250 Identities=11% Similarity=0.094 Sum_probs=158.9
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcc-----cEEEEEEeCCCCEEEEEeCC---------CeEEEEeCC
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSG-----LVKAIIISGDSNKIFTGHQD---------GKIRIWKVS 191 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~-----~V~~l~~s~~~~~l~s~~~d---------g~i~vwd~~ 191 (473)
.+.++|++++++ ||+|++||.. +....+.+|.. ....+.|||||++|+.++.+ +.+.+||+.
T Consensus 23 ~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~ 100 (740)
T 4a5s_A 23 RWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN 100 (740)
T ss_dssp EECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred EECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECC
Confidence 556678888886 8999999965 33334455542 23458999999999998876 566799999
Q ss_pred CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeE
Q 012007 192 RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE 271 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~ 271 (473)
+++..... .|...+...+|+|||+.|+.+. |+.|++||+.+++..+
T Consensus 101 ~~~~~~l~---------------------------------~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~ 146 (740)
T 4a5s_A 101 KRQLITEE---------------------------------RIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYR 146 (740)
T ss_dssp TTEECCSS---------------------------------CCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEE
T ss_pred CCcEEEcc---------------------------------cCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEE
Confidence 87643211 2667789999999999999885 6899999998877544
Q ss_pred Ee-ecCCCce-----------------eEEEEcCCC-EEEEEeCCC----------------------------------
Q 012007 272 SI-NAHDDAI-----------------NSVVAGFDS-LVFTGSADG---------------------------------- 298 (473)
Q Consensus 272 ~~-~~~~~~v-----------------~~l~~~~~~-~l~s~~~dg---------------------------------- 298 (473)
.. .++...+ ..+.|+||+ .|+.++.|.
T Consensus 147 lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~ 226 (740)
T 4a5s_A 147 ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNP 226 (740)
T ss_dssp CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCC
T ss_pred EcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCC
Confidence 22 2222222 358899999 566654322
Q ss_pred --cEEEEeCcc---cCCCcceeeee--eeccCCccEEEEEEccCCCEEEEeC----CCCcEEEEecCCcc----c--ccc
Q 012007 299 --TVKVWRREL---QGKGTKHCLAQ--VLLKHENAVTALAVNQESAVVYCGS----SDGLVNFWECEKHL----S--HGG 361 (473)
Q Consensus 299 --~i~vwd~~~---~~~~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~~~~----~dg~i~iwd~~~~~----~--~~~ 361 (473)
.|++||+.. +.......+.. .+.+|...+..++|+|||+.++... .+..|.+||+.++. . ...
T Consensus 227 ~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~ 306 (740)
T 4a5s_A 227 TVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQ 306 (740)
T ss_dssp EEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGC
T ss_pred eeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEE
Confidence 466777764 21000000000 0113777899999999999666542 33479999998765 1 111
Q ss_pred e-eecCcce-------EEEEEecCCEEE-EEe-CCC--cEEEEecCCCCceeEEEEecCCCCceeEEE
Q 012007 362 V-LRGHKMA-------VLCLAAAGNLVF-SGS-ADR--NICLWRREESGAHSCLAVLTGHTGPVKCLA 417 (473)
Q Consensus 362 ~-~~~~~~~-------v~~~~~~~~~l~-s~~-~dg--~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~ 417 (473)
. ..+|... -..+++||+.|+ ..+ .+| .|++||+.++ ... .+......|..+.
T Consensus 307 l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~---~~~-~lT~g~~~v~~~~ 370 (740)
T 4a5s_A 307 HIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK---DCT-FITKGTWEVIGIE 370 (740)
T ss_dssp EEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS---SCE-ESCCSSSCEEEEE
T ss_pred eeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC---ceE-ecccCCEEEEEEE
Confidence 1 1334322 346789999776 555 333 5788888763 222 3333344565554
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-15 Score=138.44 Aligned_cols=246 Identities=8% Similarity=0.070 Sum_probs=162.2
Q ss_pred CCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEe
Q 012007 133 GDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVK 212 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 212 (473)
+..++..+.++.+++| ..+....+..+...+.+++|+++|++++++..++.|.+||..+++......
T Consensus 17 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~------------ 83 (333)
T 2dg1_A 17 SNSAVPIISESELQTI-TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV------------ 83 (333)
T ss_dssp GGCSSCCCCGGGSCEE-ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE------------
T ss_pred ccceeEEeecccCccc-ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee------------
Confidence 3344555667788888 344455556666778999999999988888889999999998776432211
Q ss_pred ecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC----CCEEEEEcCCCeeeEEee--cCCCceeEEEEc
Q 012007 213 SSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD----KTLKVWRISDCKCLESIN--AHDDAINSVVAG 286 (473)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d----g~v~vwd~~~~~~~~~~~--~~~~~v~~l~~~ 286 (473)
.+...+.+++++++++++++...+ +.|.+||..+++....+. .+...+.++++.
T Consensus 84 --------------------~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d 143 (333)
T 2dg1_A 84 --------------------SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFD 143 (333)
T ss_dssp --------------------CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEEC
T ss_pred --------------------CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEEC
Confidence 145678999999999888777666 689999988776543332 244578999999
Q ss_pred CCCEEEEEeCC-------CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEE-EeCCCCcEEEEecCCc-c
Q 012007 287 FDSLVFTGSAD-------GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVY-CGSSDGLVNFWECEKH-L 357 (473)
Q Consensus 287 ~~~~l~s~~~d-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~~~dg~i~iwd~~~~-~ 357 (473)
+++.++.++.. +.|..+|..... . ..+......+..++|+|+++.|+ +...++.|.+||+.+. .
T Consensus 144 ~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~----~---~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~ 216 (333)
T 2dg1_A 144 SKGGFYFTDFRGYSTNPLGGVYYVSPDFRT----V---TPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGV 216 (333)
T ss_dssp TTSCEEEEECCCBTTBCCEEEEEECTTSCC----E---EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSS
T ss_pred CCCCEEEEeccccccCCCceEEEEeCCCCE----E---EEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCc
Confidence 99855555442 445555543111 1 11112234578899999998654 4456789999998632 1
Q ss_pred ccc----ce---eecCcceE--EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCC------CceeEEEEecCC
Q 012007 358 SHG----GV---LRGHKMAV--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHT------GPVKCLAVEEDR 422 (473)
Q Consensus 358 ~~~----~~---~~~~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~------~~V~~l~~~~~~ 422 (473)
... .. ..++ ... ++++++|+++++...++.|.+||... ..+..+..+. ..+.+++|++++
T Consensus 217 ~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g----~~~~~~~~~~~~~g~~~~~~~~~~~~dg 291 (333)
T 2dg1_A 217 TIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG----YPIGQILIPGRDEGHMLRSTHPQFIPGT 291 (333)
T ss_dssp SEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTTS----CEEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred CcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCCC----CEEEEEEcCCCccccccCcceEEECCCC
Confidence 111 00 1111 233 44455688888877789999999853 3344443332 268999999887
Q ss_pred C
Q 012007 423 D 423 (473)
Q Consensus 423 ~ 423 (473)
.
T Consensus 292 ~ 292 (333)
T 2dg1_A 292 N 292 (333)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-14 Score=130.96 Aligned_cols=231 Identities=12% Similarity=0.154 Sum_probs=156.9
Q ss_pred cccEEEEEe--cCCEEEEeeCCCcEEEeeCCcc-ccccc------cCcccEEEEEEe-CCCCEEEEEeC-CCeEEEEeCC
Q 012007 123 EGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKE-FSGFK------SNSGLVKAIIIS-GDSNKIFTGHQ-DGKIRIWKVS 191 (473)
Q Consensus 123 ~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~~-~~~~~------~h~~~V~~l~~s-~~~~~l~s~~~-dg~i~vwd~~ 191 (473)
-....++++ +|+++++...++.|.+||.... +..+. ++...+..+++. ++++++++... ++.|++||.
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~- 107 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ- 107 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred cCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-
Confidence 344556654 5788888888999999986532 22222 344678999995 66766655533 889999994
Q ss_pred CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeE
Q 012007 192 RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE 271 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~ 271 (473)
+++....... .+...+.+++++++++++++...++.|.+||. +++.+.
T Consensus 108 ~g~~~~~~~~-------------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~ 155 (286)
T 1q7f_A 108 YGQFVRKFGA-------------------------------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLH 155 (286)
T ss_dssp TSCEEEEECT-------------------------------TTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEE
T ss_pred CCcEEEEecC-------------------------------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEE
Confidence 4433221110 13456789999999998887777899999996 466666
Q ss_pred Eee--cCCCceeEEEEcCCCE-EEEEeCCCcEEEEeCcccCCCcceeeeeee--ccCCccEEEEEEccCCCEEEEeCCCC
Q 012007 272 SIN--AHDDAINSVVAGFDSL-VFTGSADGTVKVWRRELQGKGTKHCLAQVL--LKHENAVTALAVNQESAVVYCGSSDG 346 (473)
Q Consensus 272 ~~~--~~~~~v~~l~~~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~l~~~~~dg 346 (473)
.+. .+...+..+++.+++. +++...++.|++||... . ....+ .++...+..++++++|+++++...++
T Consensus 156 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-----~--~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~ 228 (286)
T 1q7f_A 156 KFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-----Q--YLRQIGGEGITNYPIGVGINSNGEILIADNHNN 228 (286)
T ss_dssp EEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-----C--EEEEESCTTTSCSEEEEEECTTCCEEEEECSSS
T ss_pred EeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-----C--EEEEEccCCccCCCcEEEECCCCCEEEEeCCCC
Confidence 654 3445789999999884 44556689999999741 1 11222 22336789999999999888888776
Q ss_pred -cEEEEecCCcccccceeecCc--ce--EEEEEecCCEEEEEeCCCcEEEEecCC
Q 012007 347 -LVNFWECEKHLSHGGVLRGHK--MA--VLCLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 347 -~i~iwd~~~~~~~~~~~~~~~--~~--v~~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
.|.+||.... .. ..+..+. .. -.+++++|+++++ +.|+.|++|++..
T Consensus 229 ~~i~~~~~~g~-~~-~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 229 FNLTIFTQDGQ-LI-SALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp CEEEEECTTSC-EE-EEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred EEEEEECCCCC-EE-EEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 9999996542 22 2222222 12 3556677877766 6799999999865
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=7.6e-16 Score=159.65 Aligned_cols=246 Identities=9% Similarity=0.036 Sum_probs=159.1
Q ss_pred ccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE
Q 012007 162 GLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL 241 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 241 (473)
.....+.|+|||++|+++ ||.|++||+.+++........... .+......+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~ 67 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFD---------------------------EFGHSINDY 67 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTT---------------------------TCCSCCCEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhh---------------------------hhcccccce
Confidence 346689999999988886 999999999988754332211000 011223458
Q ss_pred EEcCCCCEEEEEeCC---------CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCC
Q 012007 242 SLNAEQGLLYSGSWD---------KTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 242 ~~~~~~~~l~s~s~d---------g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
.|+|||++|+.++.+ +.+.+||+.+++... +..+...+....|+|+| .|+.+ .++.|++|++..+..
T Consensus 68 ~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~- 144 (740)
T 4a5s_A 68 SISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPS- 144 (740)
T ss_dssp EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCC-
T ss_pred EECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCce-
Confidence 899999999999876 567799999988653 55677789999999999 55555 578999999864321
Q ss_pred cceeeeeeeccCCccE-----------------EEEEEccCCCEEEEeCCCC----------------------------
Q 012007 312 TKHCLAQVLLKHENAV-----------------TALAVNQESAVVYCGSSDG---------------------------- 346 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v-----------------~~l~~~~~~~~l~~~~~dg---------------------------- 346 (473)
......++...+ ..+.|+|||+.|+..+.|.
T Consensus 145 ----~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~ 220 (740)
T 4a5s_A 145 ----YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPK 220 (740)
T ss_dssp ----EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCB
T ss_pred ----EEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCC
Confidence 111112222222 3589999999998874321
Q ss_pred --------cEEEEecCC---ccc--ccceee-----cCcceE--EEEEecCCEEEEEeC----CCcEEEEecCCCCc-ee
Q 012007 347 --------LVNFWECEK---HLS--HGGVLR-----GHKMAV--LCLAAAGNLVFSGSA----DRNICLWRREESGA-HS 401 (473)
Q Consensus 347 --------~i~iwd~~~---~~~--~~~~~~-----~~~~~v--~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~-~~ 401 (473)
.|++||+.+ +.. ...... +|...+ ..+++||++++.... +..|.+||+.++.. ..
T Consensus 221 ~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~ 300 (740)
T 4a5s_A 221 AGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWN 300 (740)
T ss_dssp TTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEE
T ss_pred CcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccc
Confidence 477888877 521 111111 244444 457788987665532 34799999988541 00
Q ss_pred EE--EEe--cCCCCcee-----EEEEecCCCCCcccccCCCccEEEE-Eee-CCC--cEEEEEcCCCC
Q 012007 402 CL--AVL--TGHTGPVK-----CLAVEEDRDHDHEYHQKGDQRWTVY-SGS-LDK--SVKVWRVSEHA 456 (473)
Q Consensus 402 ~~--~~~--~~h~~~V~-----~l~~~~~~~~~~~~~~~~~~~~~l~-s~s-~Dg--~v~iW~i~~~~ 456 (473)
+. ..+ .+|...|. ..+|+||++ .|+ ..+ .+| .|++|++..+.
T Consensus 301 ~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~-------------~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 301 CLVARQHIEMSTTGWVGRFRPSEPHFTLDGN-------------SFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp ECGGGCEEEECSSSCSSSSSCCCCEECTTSS-------------EEEEEEECTTSCEEEEEEETTCSS
T ss_pred eeEEEEeeeccCCceEccCcCCCceEcCCCC-------------EEEEEEEcCCCceEEEEEECCCCc
Confidence 11 111 35665555 789999998 444 444 444 57777776543
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-15 Score=143.77 Aligned_cols=251 Identities=10% Similarity=0.001 Sum_probs=160.9
Q ss_pred cccccccCcccEEE-----EEEeCCCCEEEEEeC-CC--eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEe
Q 012007 153 EFSGFKSNSGLVKA-----IIISGDSNKIFTGHQ-DG--KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVR 224 (473)
Q Consensus 153 ~~~~~~~h~~~V~~-----l~~s~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (473)
.+..+..|...... .+|+|||++|+.++. +| .|.+||+.+++......
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~------------------------ 77 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE------------------------ 77 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCC------------------------
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeee------------------------
Confidence 34455556555555 789999999998887 66 48888988775432211
Q ss_pred ecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEE--EcCCC-EEEE--------
Q 012007 225 RNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV--AGFDS-LVFT-------- 293 (473)
Q Consensus 225 ~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~--~~~~~-~l~s-------- 293 (473)
++...+..+.|+|+++.|+.++.++.|++||+.+++....+..+...+.... +++++ +++.
T Consensus 78 --------~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~ 149 (388)
T 3pe7_A 78 --------GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDW 149 (388)
T ss_dssp --------SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGC
T ss_pred --------CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccc
Confidence 1334444678999999999999999999999999988777766666554443 37777 4432
Q ss_pred --------------EeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc-CCCEEEEeCCC------CcEEEEe
Q 012007 294 --------------GSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSD------GLVNFWE 352 (473)
Q Consensus 294 --------------~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~d------g~i~iwd 352 (473)
...+..|.+||+..+. ...+..+...+..++|+| +++.|+....+ ..|.++|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-------~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d 222 (388)
T 3pe7_A 150 VPLTDWKKFHEFYFTKPCCRLMRVDLKTGE-------STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLIN 222 (388)
T ss_dssp CCCCSHHHHHHHGGGCCCEEEEEEETTTCC-------EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEE
T ss_pred ccccccchhhhhhccCCcceEEEEECCCCc-------eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEe
Confidence 1234678999987432 223334566789999999 99988776553 3788888
Q ss_pred cCCcccccceeecCc-ceE--EEEEecCCEEEEEeC-CC----cEEEEecCCCCceeEEEEecCCCCc---eeEEEEecC
Q 012007 353 CEKHLSHGGVLRGHK-MAV--LCLAAAGNLVFSGSA-DR----NICLWRREESGAHSCLAVLTGHTGP---VKCLAVEED 421 (473)
Q Consensus 353 ~~~~~~~~~~~~~~~-~~v--~~~~~~~~~l~s~~~-dg----~i~iwd~~~~~~~~~~~~~~~h~~~---V~~l~~~~~ 421 (473)
....... .....+. ..+ ..++++|+.|+..+. ++ .|++||+.++. ...+..+.++... ...++|+|+
T Consensus 223 ~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~-~~~l~~~~~~~~~~~~~~~~~~spd 300 (388)
T 3pe7_A 223 EDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLE-NRQLTSMPACSHLMSNYDGSLMVGD 300 (388)
T ss_dssp TTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCC-EEEEEEECCEEEEEECTTSSEEEEE
T ss_pred CCCCceE-EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCc-eEEEEcCCCceeeeecCCCCeEccC
Confidence 7653221 2222221 123 467788987755443 22 39999998843 2344444442111 223479999
Q ss_pred CCCCcccccCCCccEEEEEe--------eCCCcEEEEEcCCCC
Q 012007 422 RDHDHEYHQKGDQRWTVYSG--------SLDKSVKVWRVSEHA 456 (473)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~s~--------s~Dg~v~iW~i~~~~ 456 (473)
++. ++++. ..+..|++|++..++
T Consensus 301 g~~------------l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 301 GSD------------APVDVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp ECC------------C------------CCCCEEEEEETTTTE
T ss_pred CCc------------ceeEeeeccccccCCCCEEEEEeccCCc
Confidence 883 23222 556789999998754
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-14 Score=135.61 Aligned_cols=267 Identities=12% Similarity=0.071 Sum_probs=172.4
Q ss_pred eeeeeeecccEEEEEecCCEEEEee----------CCCcEEEeeCC--cccccccc------CcccEEEEEEeCCCCEEE
Q 012007 116 IGSIVRKEGHIYSLAASGDLLYTGS----------DSKNIRVWKNL--KEFSGFKS------NSGLVKAIIISGDSNKIF 177 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~g~~l~tg~----------~dg~i~vwd~~--~~~~~~~~------h~~~V~~l~~s~~~~~l~ 177 (473)
+..+..+.++-..++++|++|+++. .++.|.+||.. +.+..+.. +......++|+|||++|+
T Consensus 44 ~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~ 123 (361)
T 2oiz_A 44 LGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIV 123 (361)
T ss_dssp EEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEE
T ss_pred EEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEE
Confidence 4455444444456778899999886 36789999965 33333322 224567899999999999
Q ss_pred EEeC--CCeEEEEeCCCCCeeeE-EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCC-CEEEEE
Q 012007 178 TGHQ--DGKIRIWKVSRKNASVH-KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQ-GLLYSG 253 (473)
Q Consensus 178 s~~~--dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~ 253 (473)
++.. ++.|.+||+.+++.... .. +. ....+.+.|++ ..+++.
T Consensus 124 v~n~~~~~~v~v~d~~~~~~~~~~i~---------------------------------~~-~~~~v~~~p~~~~~~~~~ 169 (361)
T 2oiz_A 124 LQNASPATSIGIVDVAKGDYVEDVTA---------------------------------AA-GCWSVIPQPNRPRSFMTI 169 (361)
T ss_dssp EEEESSSEEEEEEETTTTEEEEEEGG---------------------------------GT-TEEEEEECTTSSSEEEEE
T ss_pred EECCCCCCeEEEEECCCCcEEEEEec---------------------------------CC-CcceeEEcCCCCeeEEEE
Confidence 8874 57999999998754322 11 11 12224566754 677888
Q ss_pred eCCCCEEEEEcCC-CeeeEE------eecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeec---c
Q 012007 254 SWDKTLKVWRISD-CKCLES------INAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLL---K 322 (473)
Q Consensus 254 s~dg~v~vwd~~~-~~~~~~------~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~---~ 322 (473)
+.||.+.+|++.. ++.... +.....++ .+...+++ .++..+.++.|.++|+...... ......... .
T Consensus 170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~-~~~~~~~~~~~~~ 247 (361)
T 2oiz_A 170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVK-VDGPWSLLNDEDK 247 (361)
T ss_dssp ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCE-EEEEEESCCHHHH
T ss_pred CCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCce-ecccccccCcccc
Confidence 8999999999865 554422 12222222 11223333 5566678899999998632210 000000000 0
Q ss_pred C----CccEEEEEEccCCCEEEEeCC-----------CCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCC
Q 012007 323 H----ENAVTALAVNQESAVVYCGSS-----------DGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADR 387 (473)
Q Consensus 323 ~----~~~v~~l~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg 387 (473)
+ ......++|+|+++.++++.. .+.|.+||+.+.+.......+. ..-..++++|++|++++. +
T Consensus 248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~ 325 (361)
T 2oiz_A 248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-G 325 (361)
T ss_dssp HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-S
T ss_pred ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-C
Confidence 0 011123789999888777543 3489999999876554444444 566778899999999887 9
Q ss_pred cEEEEecCCCCce--eEEEEecCCCCceeEEEEecCCC
Q 012007 388 NICLWRREESGAH--SCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 388 ~i~iwd~~~~~~~--~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
.|.+||..+ . +.+..+..+......++++|++.
T Consensus 326 ~v~v~D~~t---~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 326 NVNVYDISQ---PEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp CEEEEECSS---SSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred eEEEEECCC---CcceeeEEeccCCCCcEEEEecCCCC
Confidence 999999998 5 77788766777789999999875
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.3e-14 Score=145.86 Aligned_cols=282 Identities=11% Similarity=0.039 Sum_probs=177.0
Q ss_pred EEEEEecCCEEEEeeCCC-----cEEEeeCC-cccc------c-cccCcccEEEEEEeCCCCEEEEEeCCC-----eEEE
Q 012007 126 IYSLAASGDLLYTGSDSK-----NIRVWKNL-KEFS------G-FKSNSGLVKAIIISGDSNKIFTGHQDG-----KIRI 187 (473)
Q Consensus 126 V~~~~~~g~~l~tg~~dg-----~i~vwd~~-~~~~------~-~~~h~~~V~~l~~s~~~~~l~s~~~dg-----~i~v 187 (473)
+.+..++|++++....++ .|.+.+.. .... . -.+|...+..++|+|||++|+.+..++ .|++
T Consensus 76 ~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v 155 (710)
T 2xdw_A 76 YSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKF 155 (710)
T ss_dssp ECCCEEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEE
T ss_pred CCCCEEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEE
Confidence 334458888776554322 23333332 1111 1 123445789999999999998776543 8999
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCC---------
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKT--------- 258 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~--------- 258 (473)
||+.+++...... ....+..++|+|||+.|+.++.++.
T Consensus 156 ~d~~tg~~~~~~~---------------------------------~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~ 202 (710)
T 2xdw_A 156 MKVDGAKELPDVL---------------------------------ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET 202 (710)
T ss_dssp EETTTTEEEEEEE---------------------------------EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred EECCCCCCCcccc---------------------------------cCcccceEEEEeCCCEEEEEEECCcccccccccc
Confidence 9999886543211 1112667999999999999988776
Q ss_pred -------EEEEEcCCCee----eEEeecCCCceeEEEEcCCC-EEEEEeC-----CCcEEEEeCcccCCCc-ceeeeeee
Q 012007 259 -------LKVWRISDCKC----LESINAHDDAINSVVAGFDS-LVFTGSA-----DGTVKVWRRELQGKGT-KHCLAQVL 320 (473)
Q Consensus 259 -------v~vwd~~~~~~----~~~~~~~~~~v~~l~~~~~~-~l~s~~~-----dg~i~vwd~~~~~~~~-~~~~~~~~ 320 (473)
|++|++.+++. +.....+...+..+.|+|++ +|+.++. +..|.+||+....... .......+
T Consensus 203 ~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l 282 (710)
T 2xdw_A 203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL 282 (710)
T ss_dssp CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEe
Confidence 99999987752 22223345567889999998 5555443 5689999986410000 00012333
Q ss_pred ccCCccEEEEEEccCCCEEEEeCCC----CcEEEEecCCccc-ccceeecCcc--eEEEEEe--cCCEEEEEeCCCc--E
Q 012007 321 LKHENAVTALAVNQESAVVYCGSSD----GLVNFWECEKHLS-HGGVLRGHKM--AVLCLAA--AGNLVFSGSADRN--I 389 (473)
Q Consensus 321 ~~~~~~v~~l~~~~~~~~l~~~~~d----g~i~iwd~~~~~~-~~~~~~~~~~--~v~~~~~--~~~~l~s~~~dg~--i 389 (473)
..+...+.. .|+++|..|+..+.. +.|.+||+.+... ....+..|.. .+..+.+ ++.++++...|+. |
T Consensus 283 ~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l 361 (710)
T 2xdw_A 283 IDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTL 361 (710)
T ss_dssp ECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEE
T ss_pred eCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEE
Confidence 444555544 478888877665543 3699999876532 1123334433 4544444 4567778888885 5
Q ss_pred EEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEee---CCCcEEEEEcCCCC
Q 012007 390 CLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS---LDKSVKVWRVSEHA 456 (473)
Q Consensus 390 ~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s---~Dg~v~iW~i~~~~ 456 (473)
.+|++.+ ...+..+..+.+.|..++++|++.. ++++.+ ..++|.+||+.+++
T Consensus 362 ~~~~~~~---g~~~~~l~~~~~~v~~~~~s~d~~~------------l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 362 QLHDLAT---GALLKIFPLEVGSVVGYSGQKKDTE------------IFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTT---CCEEEEECCCSSEEEEEECCTTCSE------------EEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCC---CCEEEecCCCCceEEEEecCCCCCE------------EEEEEeCCCCCCEEEEEECCCCc
Confidence 5566645 2455666777788999999998762 343333 45789999998765
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-12 Score=119.01 Aligned_cols=275 Identities=9% Similarity=0.030 Sum_probs=180.1
Q ss_pred cccEEEEEec--CCEEEEeeCCCcEEEeeCCccccccc--cCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeE
Q 012007 123 EGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKEFSGFK--SNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVH 198 (473)
Q Consensus 123 ~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~~~~~~~--~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 198 (473)
...+.++..+ |++.++...++.|.+||....+..+. .+...+.++++.++|+++++...++.|..|+.. +.. ..
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~ 91 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KE 91 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EE
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EE
Confidence 4556677654 77666666678999998764443332 245679999999999888877778899999976 221 11
Q ss_pred EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEE-eecCC
Q 012007 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES-INAHD 277 (473)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~-~~~~~ 277 (473)
.... .....+..+++.+++.++++...++.|.+||. +++.... .....
T Consensus 92 ~~~~------------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~ 140 (299)
T 2z2n_A 92 YTLP------------------------------NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKG 140 (299)
T ss_dssp EECS------------------------------STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTT
T ss_pred EeCC------------------------------CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCC
Confidence 1100 13456788999999988887777889999998 5544332 23345
Q ss_pred CceeEEEEcCCCEEEE-EeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCc
Q 012007 278 DAINSVVAGFDSLVFT-GSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH 356 (473)
Q Consensus 278 ~~v~~l~~~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~ 356 (473)
..+..+++.+++.++. ...++.|..||. .+. .. ..........+..+++++++.++++...++.|.+||. ++
T Consensus 141 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~----~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g 213 (299)
T 2z2n_A 141 SYPSFITLGSDNALWFTENQNNAIGRITE-SGD----IT-EFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SG 213 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECT-TCC----EE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC
T ss_pred CCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCc----EE-EeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CC
Confidence 6788999998885444 445788999987 221 11 1112234456889999999998877777889999998 43
Q ss_pred ccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCc
Q 012007 357 LSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQ 434 (473)
Q Consensus 357 ~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~ 434 (473)
.........+...+.++. ++|+++++...++.|.+||... ......+..+...+.++++ +++.
T Consensus 214 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g---~~~~~~~~~~~~~~~~i~~-~~g~----------- 278 (299)
T 2z2n_A 214 EITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNN---IIEEYPIQIKSAEPHGICF-DGET----------- 278 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETTT---EEEEEECSSSSCCEEEEEE-CSSC-----------
T ss_pred cEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCCC---ceEEEeCCCCCCccceEEe-cCCC-----------
Confidence 322111222334455555 4577666665788999999842 1122223445567899999 8776
Q ss_pred cEEEEEeeCCCcEEEEEcCCC
Q 012007 435 RWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 435 ~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
++++.. .+.|..++..+.
T Consensus 279 --l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 279 --IWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp --EEEEET-TTEEEEEEEC--
T ss_pred --EEEEec-CCcEEEEEcCcc
Confidence 555544 566777776554
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.5e-14 Score=129.38 Aligned_cols=242 Identities=12% Similarity=0.099 Sum_probs=162.3
Q ss_pred cccccCcccEEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee
Q 012007 155 SGFKSNSGLVKAIIISGDSN-KIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (473)
..+..+.....+++|+|+++ +++++..++.|..|+..++ . .... .
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~~~~--------------------------------~ 66 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-SPEM--------------------------------H 66 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-EEEE--------------------------------S
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-EEEE--------------------------------C
Confidence 34445566788999999998 7788888999999999876 2 1111 1
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecC----CCceeEEEEcCCCEEEE-----EeC--------
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH----DDAINSVVAGFDSLVFT-----GSA-------- 296 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~----~~~v~~l~~~~~~~l~s-----~~~-------- 296 (473)
+...+.+++++++++++++...++.|.+||..+++........ ...+..+++.+++.++. |+.
T Consensus 67 ~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~ 146 (296)
T 3e5z_A 67 PSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGG 146 (296)
T ss_dssp SCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCC
T ss_pred CCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccc
Confidence 4567889999999998777777789999999887754433221 23467899999985444 321
Q ss_pred -----CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC-Cccc-c-cceeecCcc
Q 012007 297 -----DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE-KHLS-H-GGVLRGHKM 368 (473)
Q Consensus 297 -----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~-~~~~-~-~~~~~~~~~ 368 (473)
.+.|..++.. +. ......+......++|+|+++.|++.+.++.|.+||+. .+.. . ...+..+..
T Consensus 147 ~~~~~~~~l~~~~~~--g~------~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~ 218 (296)
T 3e5z_A 147 EMELPGRWVFRLAPD--GT------LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPG 218 (296)
T ss_dssp CCCSSSCEEEEECTT--SC------EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSS
T ss_pred cccCCCcEEEEECCC--CC------EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCC
Confidence 2345555543 11 12234455677899999999988888888999999986 2221 0 112211222
Q ss_pred e--EEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEe-cCCCCCcccccCCCccEEEEEeeCCC
Q 012007 369 A--VLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVE-EDRDHDHEYHQKGDQRWTVYSGSLDK 445 (473)
Q Consensus 369 ~--v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~~~~~~~~~~~~~~l~s~s~Dg 445 (473)
. -++++++|+++++. ++.|.+|+... +.+..+..+.. +++++|. +++. .|+.++.+
T Consensus 219 ~p~~i~~d~~G~l~v~~--~~~v~~~~~~g----~~~~~~~~~~~-~~~~~f~~~d~~-------------~L~v~t~~- 277 (296)
T 3e5z_A 219 KTDGLRVDAGGLIWASA--GDGVHVLTPDG----DELGRVLTPQT-TSNLCFGGPEGR-------------TLYMTVST- 277 (296)
T ss_dssp CCCSEEEBTTSCEEEEE--TTEEEEECTTS----CEEEEEECSSC-CCEEEEESTTSC-------------EEEEEETT-
T ss_pred CCCeEEECCCCCEEEEc--CCeEEEECCCC----CEEEEEECCCC-ceeEEEECCCCC-------------EEEEEcCC-
Confidence 2 24556678866665 78899999864 45666666666 9999994 7776 67777766
Q ss_pred cEEEEEcCCCCCCccC
Q 012007 446 SVKVWRVSEHAPDLKG 461 (473)
Q Consensus 446 ~v~iW~i~~~~~~~~~ 461 (473)
.+|.+......++.
T Consensus 278 --~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 278 --EFWSIETNVRGLEH 291 (296)
T ss_dssp --EEEEEECSCCBCCC
T ss_pred --eEEEEEcccccccc
Confidence 36666555544444
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-13 Score=136.50 Aligned_cols=275 Identities=9% Similarity=0.065 Sum_probs=188.1
Q ss_pred EEecCCEEEEeeCCCcEEEeeCCc--cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCC--CCCeeeEEeeccc
Q 012007 129 LAASGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVS--RKNASVHKRVGSL 204 (473)
Q Consensus 129 ~~~~g~~l~tg~~dg~i~vwd~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~ 204 (473)
..+.+.++++...++.|.++|... .+..+. ....+..+.|+|||++|++++.|+.|.+||+. +.+......
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~---- 237 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK---- 237 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE----
T ss_pred cCCCceEEEEeCCCCeEEEEECCCCeEEEEEe-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe----
Confidence 334456777888899999999763 343443 23456799999999999999999999999995 554433222
Q ss_pred cccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEc----CCCCEEEEEeC-CCCEEEEEcCCCeeeEEeecC---
Q 012007 205 PTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLN----AEQGLLYSGSW-DKTLKVWRISDCKCLESINAH--- 276 (473)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~----~~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~--- 276 (473)
.......++|+ |+|++++++.+ +++|.++|..+.+.+..+...
T Consensus 238 -----------------------------~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~ 288 (567)
T 1qks_A 238 -----------------------------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT 288 (567)
T ss_dssp -----------------------------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC
T ss_pred -----------------------------cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccc
Confidence 22235689999 69999888765 589999999999988877532
Q ss_pred --------CCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC-CC
Q 012007 277 --------DDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS-SD 345 (473)
Q Consensus 277 --------~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~d 345 (473)
...+..+..++++ +++....+|.|.++|..... .+.............+.|+|++++++++. .+
T Consensus 289 ~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~-----~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~s 363 (567)
T 1qks_A 289 YDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN-----NLKTTEISAERFLHDGGLDGSHRYFITAANAR 363 (567)
T ss_dssp TTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS-----EEEEEEEECCSSEEEEEECTTSCEEEEEEGGG
T ss_pred cccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc-----cceeeeeeccccccCceECCCCCEEEEEeCCC
Confidence 1256778888775 66677778999999986321 11112223344577889999999877654 57
Q ss_pred CcEEEEecCCcccccceee----cCcc-eEEEEEecCC-EEEEEe-CCCcEEEEecCCCC----ceeEEEEecCCCCcee
Q 012007 346 GLVNFWECEKHLSHGGVLR----GHKM-AVLCLAAAGN-LVFSGS-ADRNICLWRREESG----AHSCLAVLTGHTGPVK 414 (473)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~----~~~~-~v~~~~~~~~-~l~s~~-~dg~i~iwd~~~~~----~~~~~~~~~~h~~~V~ 414 (473)
+.|.++|+.+.+....... .|.. .+.-+.+++. +++++. .++.|.++|....+ .++.++.+......-.
T Consensus 364 n~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~ 443 (567)
T 1qks_A 364 NKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSL 443 (567)
T ss_dssp TEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCC
T ss_pred CeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCE
Confidence 8999999998654332222 2432 2222466644 444443 46899999988632 1556677665433335
Q ss_pred EEEEecCCCCCcccccCCCccEEEEEeeC-------CCcEEEEEcCCC
Q 012007 415 CLAVEEDRDHDHEYHQKGDQRWTVYSGSL-------DKSVKVWRVSEH 455 (473)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~~~~~~l~s~s~-------Dg~v~iW~i~~~ 455 (473)
.+..+|+++ .|+.... ..+|.|+|+.+.
T Consensus 444 ~i~~~p~~~-------------~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 444 FIKTHPNSQ-------------YLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp CEECCTTCS-------------EEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EEEeCCCCC-------------eEEEecCCCCCcccCceEEEEECCcc
Confidence 578899988 4554331 359999999877
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-14 Score=147.62 Aligned_cols=278 Identities=11% Similarity=0.034 Sum_probs=175.0
Q ss_pred cEEEEEecCCEEEEeeCCC---cEEEe--eCC-cccccc-------ccCcccEEEEEEeCCCCEEE-----EEeCCCeEE
Q 012007 125 HIYSLAASGDLLYTGSDSK---NIRVW--KNL-KEFSGF-------KSNSGLVKAIIISGDSNKIF-----TGHQDGKIR 186 (473)
Q Consensus 125 ~V~~~~~~g~~l~tg~~dg---~i~vw--d~~-~~~~~~-------~~h~~~V~~l~~s~~~~~l~-----s~~~dg~i~ 186 (473)
.+....++|++++....++ .-.|| +.. .....+ .+|...+..++|||||++|| .|+.+..|+
T Consensus 71 ~~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~ 150 (695)
T 2bkl_A 71 SVSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLH 150 (695)
T ss_dssp EECCCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEE
T ss_pred cCCCCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEE
Confidence 3444558888877766544 34455 322 111111 24566799999999999998 344456899
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCC--------
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKT-------- 258 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~-------- 258 (473)
+||+.+++....... .......++|+|||+.|+.++.|..
T Consensus 151 v~dl~tg~~~~~~~~--------------------------------~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~ 198 (695)
T 2bkl_A 151 VIDVDSGEWSKVDVI--------------------------------EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDER 198 (695)
T ss_dssp EEETTTCCBCSSCCB--------------------------------SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGG
T ss_pred EEECCCCCCcCCccc--------------------------------CcccccceEEecCCCEEEEEEecCCCCCccccC
Confidence 999998864310000 1111257899999999999998876
Q ss_pred -----EEEEEcCCCe----eeEEeecCCCceeEEEEcCCC-EEEEEeCCC----cEEEEeCcccCCCcceeeeeeeccCC
Q 012007 259 -----LKVWRISDCK----CLESINAHDDAINSVVAGFDS-LVFTGSADG----TVKVWRRELQGKGTKHCLAQVLLKHE 324 (473)
Q Consensus 259 -----v~vwd~~~~~----~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~ 324 (473)
|++|++.+++ .+.....+...+..+.++|++ +|+.++.++ .|.+|+...+ ....+..+.
T Consensus 199 ~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~-------~~~~l~~~~ 271 (695)
T 2bkl_A 199 PGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK-------DFRLLVKGV 271 (695)
T ss_dssp GGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS-------SCEEEEECS
T ss_pred CCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC-------ceEEeecCC
Confidence 9999998775 333444455678899999998 555555544 5666654211 122333444
Q ss_pred ccEEEEEEccCCCEEEEeC---CCCcEEEEecCCccc--ccceeecC-cceEEEEEe-cCCEEEEEeCCCcEEEEecCCC
Q 012007 325 NAVTALAVNQESAVVYCGS---SDGLVNFWECEKHLS--HGGVLRGH-KMAVLCLAA-AGNLVFSGSADRNICLWRREES 397 (473)
Q Consensus 325 ~~v~~l~~~~~~~~l~~~~---~dg~i~iwd~~~~~~--~~~~~~~~-~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~ 397 (473)
..+....+ +++.+++.+. .++.|.+||+.++.. .......+ ...+..+++ ++.++++...|+..+||.+...
T Consensus 272 ~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~ 350 (695)
T 2bkl_A 272 GAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLK 350 (695)
T ss_dssp SCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred CceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCC
Confidence 55566666 5555555544 257899999976532 12233333 334555554 4667788888999888876531
Q ss_pred CceeEEEEecCC-CCceeEEEEecCCCCCcccccCCCccEEEEEe---eCCCcEEEEEcCCCC
Q 012007 398 GAHSCLAVLTGH-TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG---SLDKSVKVWRVSEHA 456 (473)
Q Consensus 398 ~~~~~~~~~~~h-~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~---s~Dg~v~iW~i~~~~ 456 (473)
...+..+..+ .+.|..+++++++.. ++++. ..+++|++||+.+++
T Consensus 351 --g~~~~~l~~~~~~~v~~~~~s~d~~~------------l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 351 --GKPVRTVQLPGVGAASNLMGLEDLDD------------AYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp --CCEEEECCCSSSSEECCCBSCTTCSE------------EEEEEEETTEEEEEEEEETTTCC
T ss_pred --CCeeEEecCCCCeEEEEeecCCCCCE------------EEEEEcCCCCCCEEEEEECCCCc
Confidence 2344555554 667888899998762 33333 345789999998765
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.63 E-value=7.1e-14 Score=126.12 Aligned_cols=237 Identities=9% Similarity=0.033 Sum_probs=157.4
Q ss_pred cEEEEEEeCCCCEEE-EEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE
Q 012007 163 LVKAIIISGDSNKIF-TGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL 241 (473)
Q Consensus 163 ~V~~l~~s~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 241 (473)
...+++++++|++++ +...++.|.+|+..+....... ..+...+.++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~--------------------------------~~~~~~p~~i 72 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP--------------------------------FNGLYQPQGL 72 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECC--------------------------------CCSCCSCCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEe--------------------------------eCCcCCccee
Confidence 678999999998666 4467889999987554321100 0133467789
Q ss_pred EEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee-cCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeee
Q 012007 242 SLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN-AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQV 319 (473)
Q Consensus 242 ~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 319 (473)
+++++++++++.. ++.|.+||....... .+. .....+..+++.+++ ++++...++.|.+|+..... . ...
T Consensus 73 ~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~-----~-~~~ 144 (270)
T 1rwi_B 73 AVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT-----Q-TVL 144 (270)
T ss_dssp EECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS-----C-EEC
T ss_pred EECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCce-----e-Eee
Confidence 9999988555555 889999998765433 232 233578899999888 44455667899999754211 1 111
Q ss_pred eccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEE--EecCCEEEEEeCCCcEEEEecCCC
Q 012007 320 LLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCL--AAAGNLVFSGSADRNICLWRREES 397 (473)
Q Consensus 320 ~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~~~dg~i~iwd~~~~ 397 (473)
.......+..++++++++++++...++.|.+||.......... ..+......+ .++|.++++...++.|.+|+....
T Consensus 145 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 145 PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP-FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST 223 (270)
T ss_dssp CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC-CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeec-ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence 1222345788999999998877777889999998764332111 1222334444 455777777777889999998762
Q ss_pred CceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 398 GAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 398 ~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
........+...+.++++++++. ++++...++.|+++++...+
T Consensus 224 ---~~~~~~~~~~~~p~~i~~~~~g~-------------l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 224 ---TSTVLPFTGLNTPLAVAVDSDRT-------------VYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp ---CCEECCCCSCSCEEEEEECTTCC-------------EEEEEGGGTEEEEECCCGGG
T ss_pred ---cceeeccCCCCCceeEEECCCCC-------------EEEEECCCCEEEEEcCCCcc
Confidence 22222223335689999999987 88888899999999987654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-13 Score=126.20 Aligned_cols=243 Identities=10% Similarity=0.075 Sum_probs=160.0
Q ss_pred ccEEEEE--ecCCEEEEeeCC------------------------CcEEEeeCC-cc-ccccc-cCcccEEEEEEeCCCC
Q 012007 124 GHIYSLA--ASGDLLYTGSDS------------------------KNIRVWKNL-KE-FSGFK-SNSGLVKAIIISGDSN 174 (473)
Q Consensus 124 ~~V~~~~--~~g~~l~tg~~d------------------------g~i~vwd~~-~~-~~~~~-~h~~~V~~l~~s~~~~ 174 (473)
+.+.+++ ++|+++++...+ +.|.+||.. .. +..+. ++-.....|+++++|+
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~ 103 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN 103 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence 3455555 458888888777 479999864 22 22222 3445789999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCC-eeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEE
Q 012007 175 KIFTGHQDGKIRIWKVSRKN-ASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYS 252 (473)
Q Consensus 175 ~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s 252 (473)
++++...++.|++|+..... ..........+.. ..++......|+++| ++.++++
T Consensus 104 l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~-----------------------~~~~~~~P~~ia~~~~~g~lyv~ 160 (329)
T 3fvz_A 104 YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGS-----------------------DQNHFCQPTDVAVEPSTGAVFVS 160 (329)
T ss_dssp EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCC-----------------------STTCCSSEEEEEECTTTCCEEEE
T ss_pred EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCC-----------------------CccccCCCcEEEEeCCCCeEEEE
Confidence 88888889999999986542 1111110000000 001445688999999 7887777
Q ss_pred Ee-CCCCEEEEEcCCCeeeEEeecC----------CCceeEEEEcCC-C-EEEEEeCCCcEEEEeCcccCCCcceeeeee
Q 012007 253 GS-WDKTLKVWRISDCKCLESINAH----------DDAINSVVAGFD-S-LVFTGSADGTVKVWRRELQGKGTKHCLAQV 319 (473)
Q Consensus 253 ~s-~dg~v~vwd~~~~~~~~~~~~~----------~~~v~~l~~~~~-~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 319 (473)
.+ .++.|++|| .+++.+..+... -.....+++.++ + ++++...++.|++||...+. ....
T Consensus 161 d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~------~~~~ 233 (329)
T 3fvz_A 161 DGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE------FVRE 233 (329)
T ss_dssp ECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC------EEEE
T ss_pred eCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc------EEEE
Confidence 76 689999999 577777766422 234789999988 6 55666778899999986322 1222
Q ss_pred e--ccCCccEEEEEEcc------CCCEEEEeCCCCcEEEEecCCccccccee--ecCcceE--EEEEecCCEEEEEeCCC
Q 012007 320 L--LKHENAVTALAVNQ------ESAVVYCGSSDGLVNFWECEKHLSHGGVL--RGHKMAV--LCLAAAGNLVFSGSADR 387 (473)
Q Consensus 320 ~--~~~~~~v~~l~~~~------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v--~~~~~~~~~l~s~~~dg 387 (473)
+ ..+...+..++++| +++.+++...+..|++||..++......- .++.... .+++++|.++++...++
T Consensus 234 ~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~ 313 (329)
T 3fvz_A 234 IKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTN 313 (329)
T ss_dssp ECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSC
T ss_pred EeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCC
Confidence 2 34566788999999 33333333445689999988765432211 2333334 44556787888888899
Q ss_pred cEEEEecCC
Q 012007 388 NICLWRREE 396 (473)
Q Consensus 388 ~i~iwd~~~ 396 (473)
.|++|++..
T Consensus 314 ~I~~~~~~~ 322 (329)
T 3fvz_A 314 TVWKFTLTE 322 (329)
T ss_dssp CEEEEEEEE
T ss_pred EEEEEeCCc
Confidence 999999865
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-13 Score=124.46 Aligned_cols=244 Identities=8% Similarity=0.040 Sum_probs=159.1
Q ss_pred eeeeeeecccEEEEE--ecCC-EEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q 012007 116 IGSIVRKEGHIYSLA--ASGD-LLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSR 192 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~--~~g~-~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~ 192 (473)
+..+..+.....++. ++|+ +++++..++.|.+|+.......+..+...+.+++++++|+++++...++.|.+||..+
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~ 99 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG 99 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence 344444444444444 5577 7888888999999997755666667778899999999999887777778999999977
Q ss_pred CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE----e-------------C
Q 012007 193 KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG----S-------------W 255 (473)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~----s-------------~ 255 (473)
++.......... .....+..++++++|+++++. + .
T Consensus 100 g~~~~~~~~~~~----------------------------~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~ 151 (296)
T 3e5z_A 100 GEWESIADSFEG----------------------------KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELP 151 (296)
T ss_dssp CCEEEEECEETT----------------------------EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSS
T ss_pred CcEEEEeeccCC----------------------------CCCCCCCCEEECCCCCEEEECCccccccccccccccccCC
Confidence 764322110000 023456789999999988873 2 1
Q ss_pred CCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc
Q 012007 256 DKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ 334 (473)
Q Consensus 256 dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 334 (473)
.+.|..++.. ++ +..+..+......+++++++ .+++.+.++.|.+|++...+. .......+..+...+..+++++
T Consensus 152 ~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~--~~~~~~~~~~~~~~p~~i~~d~ 227 (296)
T 3e5z_A 152 GRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGE--TEYQGVHFTVEPGKTDGLRVDA 227 (296)
T ss_dssp SCEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSC--EEEEEEEECCSSSCCCSEEEBT
T ss_pred CcEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCc--CcCCCeEeeCCCCCCCeEEECC
Confidence 2345555544 33 44455566778899999998 557777789999999862221 1000111123455677899999
Q ss_pred CCCEEEEeCCCCcEEEEecCCcccccceeecCcc-eEEEEE-ecCCEEEEEeCCCcEEEEecCC
Q 012007 335 ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKM-AVLCLA-AAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 335 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~-~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
+|+++++. ++.|.+||... ... ..+..+.. ...++. ++++.|++++.++ +.-++..+
T Consensus 228 ~G~l~v~~--~~~v~~~~~~g-~~~-~~~~~~~~~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 228 GGLIWASA--GDGVHVLTPDG-DEL-GRVLTPQTTSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp TSCEEEEE--TTEEEEECTTS-CEE-EEEECSSCCCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred CCCEEEEc--CCeEEEECCCC-CEE-EEEECCCCceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 99977666 78999999874 222 23333333 223342 4677888888763 55555555
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.1e-13 Score=121.28 Aligned_cols=213 Identities=11% Similarity=-0.013 Sum_probs=145.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEE
Q 012007 172 DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLY 251 (473)
Q Consensus 172 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 251 (473)
.+++|++++.|+.|.+||.++++........ ....+.++.+.|+|++|+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~-------------------------------~~~~~~~~~~~pdG~ilv 52 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLE-------------------------------KGWECNSVAATKAGEILF 52 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECC-------------------------------TTCCCCEEEECTTSCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCC-------------------------------ccCCCcCeEECCCCCEEE
Confidence 4578999999999999999888876554421 113578899999999888
Q ss_pred EEeCCCCEEEEEcCCCeeeEEeecCC-CceeEEEEcCCC-EEEEEeC-CCcEEEEeCcccCCCcceeeeeeeccCCccEE
Q 012007 252 SGSWDKTLKVWRISDCKCLESINAHD-DAINSVVAGFDS-LVFTGSA-DGTVKVWRRELQGKGTKHCLAQVLLKHENAVT 328 (473)
Q Consensus 252 s~s~dg~v~vwd~~~~~~~~~~~~~~-~~v~~l~~~~~~-~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~ 328 (473)
+.++.|..||. +++.+..+..+. ..+.++.+.+++ .+++.+. ++.|..+|.. ++.............+.....
T Consensus 53 --s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~~~~~ 128 (276)
T 3no2_A 53 --SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPHAQFR 128 (276)
T ss_dssp --ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGGGSCS
T ss_pred --eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCccccccc
Confidence 45788999998 899999998753 468888888888 5666565 6777777653 111000000001111223445
Q ss_pred EEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecC
Q 012007 329 ALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTG 408 (473)
Q Consensus 329 ~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 408 (473)
.+++.++|+++++...++.|..||.+ ++..-..............++|++++++..++.|..+|..++ +.+..+..
T Consensus 129 ~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG---~~~w~~~~ 204 (276)
T 3no2_A 129 QINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESN---RIVRRVNA 204 (276)
T ss_dssp CCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTC---CEEEEEEG
T ss_pred CceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCC---cEEEEecC
Confidence 66789999999999999999999987 544332222212222344567999999998889999999873 44555432
Q ss_pred C------CCceeEEEEecCCC
Q 012007 409 H------TGPVKCLAVEEDRD 423 (473)
Q Consensus 409 h------~~~V~~l~~~~~~~ 423 (473)
+ ...+..++..+++.
T Consensus 205 ~~~~~~~l~~~~~~~~~~~G~ 225 (276)
T 3no2_A 205 NDIEGVQLFFVAQLFPLQNGG 225 (276)
T ss_dssp GGSBSCCCSEEEEEEECTTSC
T ss_pred CCCCCccccccccceEcCCCC
Confidence 2 12377888888887
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.2e-13 Score=139.91 Aligned_cols=279 Identities=12% Similarity=0.018 Sum_probs=173.2
Q ss_pred cEEEEEecCCEEEEeeCCCc---EEEe--eCC----cccccc-------ccCcccEEEEEEeCCCCEEEEEeCC-----C
Q 012007 125 HIYSLAASGDLLYTGSDSKN---IRVW--KNL----KEFSGF-------KSNSGLVKAIIISGDSNKIFTGHQD-----G 183 (473)
Q Consensus 125 ~V~~~~~~g~~l~tg~~dg~---i~vw--d~~----~~~~~~-------~~h~~~V~~l~~s~~~~~l~s~~~d-----g 183 (473)
.+....++|++++....++. -.+| +.. .....+ .+|...+..++|+|||++|+.+..+ .
T Consensus 110 ~~~~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~ 189 (741)
T 1yr2_A 110 RFGLPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWR 189 (741)
T ss_dssp EECCCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEE
T ss_pred ccCCCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceE
Confidence 34445588998776655443 5556 332 122221 2234478899999999999877654 3
Q ss_pred eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCC-----
Q 012007 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKT----- 258 (473)
Q Consensus 184 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~----- 258 (473)
.|++||+.+++...... +...+..++|+|| +.|+.++.++.
T Consensus 190 ~i~v~dl~tg~~~~~~~---------------------------------~~~~~~~~~wspD-~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 190 TVKFVGVADGKPLADEL---------------------------------KWVKFSGLAWLGN-DALLYSRFAEPKEGQA 235 (741)
T ss_dssp EEEEEETTTCCEEEEEE---------------------------------EEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred EEEEEECCCCCCCCccC---------------------------------CCceeccEEEECC-CEEEEEEecCcccccc
Confidence 69999999887532211 1112356889999 98888887654
Q ss_pred ---------EEEEEcCCCe----eeEEeecCCCceeEEEEcCCC-EEEEEeCC-----CcEEEEeCcccCCCcceeeeee
Q 012007 259 ---------LKVWRISDCK----CLESINAHDDAINSVVAGFDS-LVFTGSAD-----GTVKVWRRELQGKGTKHCLAQV 319 (473)
Q Consensus 259 ---------v~vwd~~~~~----~~~~~~~~~~~v~~l~~~~~~-~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~ 319 (473)
|++|++.++. .+.....+...+..+.|+|++ +|+..+.+ ..|.+||+..+. ......
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~----~~~~~~ 311 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGK----IGPVTA 311 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTE----ECCCEE
T ss_pred cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCC----CcccEE
Confidence 8999997765 222222333458899999998 56655543 389999986321 010122
Q ss_pred eccCCccEEEEEEccCCCEEEEeCC----CCcEEEEecCCcc-cccceeecCcceEEEEEec-CCEEEEEeCCCcEEEEe
Q 012007 320 LLKHENAVTALAVNQESAVVYCGSS----DGLVNFWECEKHL-SHGGVLRGHKMAVLCLAAA-GNLVFSGSADRNICLWR 393 (473)
Q Consensus 320 ~~~~~~~v~~l~~~~~~~~l~~~~~----dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd 393 (473)
+..+...+.... +|+++.|+..+. ++.|.+||+.+.. ........+...+..+++. +.++++...|+..+||.
T Consensus 312 l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~ 390 (741)
T 1yr2_A 312 LIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLA 390 (741)
T ss_dssp EECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEE
T ss_pred ecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEE
Confidence 333444444443 488888777665 3459999987642 2333444444455556655 55677888899888876
Q ss_pred cCCCCceeEEEEecC-CCCceeEEEEecCCCCCcccccCCCccEEEEEe---eCCCcEEEEEcCCCC
Q 012007 394 REESGAHSCLAVLTG-HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG---SLDKSVKVWRVSEHA 456 (473)
Q Consensus 394 ~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~---s~Dg~v~iW~i~~~~ 456 (473)
+... ......+.. +.+.|..+.++|++.. ++++. ...++|++||+.+++
T Consensus 391 ~~~~--g~~~~~l~~~~~~~v~~~~~s~d~~~------------l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 391 FDLD--GKPAGAVSLPGIGSASGLSGRPGDRH------------AYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EETT--SCEEEECBCSSSCEEEEEECCBTCSC------------EEEEEEETTEEEEEEEEETTTTE
T ss_pred EeCC--CCceeeccCCCCeEEEEeecCCCCCE------------EEEEEcCCCCCCEEEEEECCCCc
Confidence 6521 234444544 3667899999998763 33333 345789999997754
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.3e-13 Score=123.18 Aligned_cols=257 Identities=9% Similarity=0.059 Sum_probs=168.5
Q ss_pred CCCcEEEeeCCcc-c-ccc-c-----cCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEe
Q 012007 141 DSKNIRVWKNLKE-F-SGF-K-----SNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVK 212 (473)
Q Consensus 141 ~dg~i~vwd~~~~-~-~~~-~-----~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 212 (473)
.++.|.+||.... + ..+ . ........+++.. ++..++...++.|.+||..+++......
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~------------ 81 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRIT------------ 81 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEE------------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcC------------
Confidence 3789999996522 1 111 0 1223467788753 4445555567999999999887644332
Q ss_pred ecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEEeecCC-----CceeEEEEc
Q 012007 213 SSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAHD-----DAINSVVAG 286 (473)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~-----~~v~~l~~~ 286 (473)
.......+++++++ .++++. .++.|.+||..+++....+.... .....+++
T Consensus 82 ---------------------~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~- 138 (328)
T 3dsm_A 82 ---------------------GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ- 138 (328)
T ss_dssp ---------------------CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-
T ss_pred ---------------------CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-
Confidence 33557789998888 555555 88999999999999887776433 14556666
Q ss_pred CCCEEEEEe--CCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC----------CcEEEEecC
Q 012007 287 FDSLVFTGS--ADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD----------GLVNFWECE 354 (473)
Q Consensus 287 ~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d----------g~i~iwd~~ 354 (473)
.++.++++. .++.|.++|+.... ....+.. ......++++++|++++++..+ +.|.++|..
T Consensus 139 ~~~~lyv~~~~~~~~v~viD~~t~~------~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~ 211 (328)
T 3dsm_A 139 YGKYVYVNCWSYQNRILKIDTETDK------VVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE 211 (328)
T ss_dssp ETTEEEEEECTTCCEEEEEETTTTE------EEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT
T ss_pred ECCEEEEEcCCCCCEEEEEECCCCe------EEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC
Confidence 455555554 48999999987432 1122221 2345678999999977777655 789999998
Q ss_pred Ccccccceee--cCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCC
Q 012007 355 KHLSHGGVLR--GHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKG 432 (473)
Q Consensus 355 ~~~~~~~~~~--~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~ 432 (473)
+......... +....-+++++++++|+++.. .|.+||..++... ....+........+++++|++..
T Consensus 212 t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~-~~~~~~~~~~~p~gi~vdp~~g~-------- 280 (328)
T 3dsm_A 212 TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP-VRPFLEFRDTKYYGLTVNPNNGE-------- 280 (328)
T ss_dssp TTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC-SSCSBCCCSSCEEEEEECTTTCC--------
T ss_pred CCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCcee-eeeeecCCCCceEEEEEcCCCCe--------
Confidence 7544322222 223344667777888888765 8999999874321 11112222456889999995542
Q ss_pred CccEEEEEe----eCCCcEEEEEcCCCC
Q 012007 433 DQRWTVYSG----SLDKSVKVWRVSEHA 456 (473)
Q Consensus 433 ~~~~~l~s~----s~Dg~v~iW~i~~~~ 456 (473)
++++. ..++.|.+|+.. ++
T Consensus 281 ----lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 281 ----VYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp ----EEEEECTTSSSEEEEEEECTT-CC
T ss_pred ----EEEEcccccccCCEEEEECCC-CC
Confidence 66666 678999999987 54
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-14 Score=137.92 Aligned_cols=235 Identities=7% Similarity=-0.070 Sum_probs=148.6
Q ss_pred cEEEEEEeCCCCEEEEEeCC---CeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 163 LVKAIIISGDSNKIFTGHQD---GKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 163 ~V~~l~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
.+..++|+|||++|+..... ..|.+||+.+++...... ++.....
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~--------------------------------~~~~~~~ 84 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE--------------------------------GKGDNTF 84 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC--------------------------------SSCBCTT
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec--------------------------------CCCCccc
Confidence 37788999999998877543 468888988765322110 0112223
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeE-------------------EEEcCCC-EEEEE-----
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINS-------------------VVAGFDS-LVFTG----- 294 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~-------------------l~~~~~~-~l~s~----- 294 (473)
.+.|+|++++|+.++.++.|++||+.+++.......+...... +.++|++ .++..
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 164 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT 164 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence 4789999999999999999999999988766555544432222 2345554 22222
Q ss_pred eCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc-CCCEEEEeCCC------CcEEEEecCCcccccceeecC-
Q 012007 295 SADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSD------GLVNFWECEKHLSHGGVLRGH- 366 (473)
Q Consensus 295 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~- 366 (473)
..+..|.+||+..+. ...+..+...+..+.|+| ++..|+..+.+ ..|.+||+...... ......
T Consensus 165 ~~~~~l~~~d~~~g~-------~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~ 236 (396)
T 3c5m_A 165 NPTCRLIKVDIETGE-------LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAE 236 (396)
T ss_dssp CCCEEEEEEETTTCC-------EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCT
T ss_pred CCcceEEEEECCCCc-------EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCC
Confidence 356688999986422 112224567789999999 78766655433 46888888654321 122211
Q ss_pred cceE--EEEEecCCEEEEEeCC-----CcEEEEecCCCCceeEEEEecCCCCceeEEEEec-CCCCCcccccCCCccEEE
Q 012007 367 KMAV--LCLAAAGNLVFSGSAD-----RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEE-DRDHDHEYHQKGDQRWTV 438 (473)
Q Consensus 367 ~~~v--~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~~~~~~~~~~~~~~l 438 (473)
...+ ..++++|++|+.++.+ +.|++||+.++. ...+..+.+ .. +.|+| +++ ++
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~-~~~l~~~~~----~~-~~~s~~dg~-------------~l 297 (396)
T 3c5m_A 237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE-NEEVMVMPP----CS-HLMSNFDGS-------------LM 297 (396)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC-EEEEEECCS----EE-EEEECSSSS-------------EE
T ss_pred CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC-eEEeeeCCC----CC-CCccCCCCc-------------eE
Confidence 2223 4677889877766544 449999998743 233333322 23 89999 887 56
Q ss_pred EEee----------------CCCcEEEEEcCCCC
Q 012007 439 YSGS----------------LDKSVKVWRVSEHA 456 (473)
Q Consensus 439 ~s~s----------------~Dg~v~iW~i~~~~ 456 (473)
++++ .++.|++||+..+.
T Consensus 298 ~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 298 VGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp EEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred EEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence 6544 34789999987664
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.7e-11 Score=109.07 Aligned_cols=271 Identities=8% Similarity=0.066 Sum_probs=176.4
Q ss_pred ccEEEEEe--cCCEEEEeeCCCcEEEeeCCcccccc--ccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEE
Q 012007 124 GHIYSLAA--SGDLLYTGSDSKNIRVWKNLKEFSGF--KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHK 199 (473)
Q Consensus 124 ~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~~~~~~--~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 199 (473)
..+.++.. +|++.++...++.|.+||....+..+ ..+...+.++++.++++++++...++.|..||.. ++.. ..
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~ 97 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EY 97 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EE
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-Ee
Confidence 34556665 47777776678899999876333322 2234678999999999877776667899999987 4432 11
Q ss_pred eeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeE-EeecCCC
Q 012007 200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE-SINAHDD 278 (473)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~-~~~~~~~ 278 (473)
... .....+.++++.+++.++++...++.|..||.. ++... .+.....
T Consensus 98 ~~~------------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~ 146 (300)
T 2qc5_A 98 PLP------------------------------QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGS 146 (300)
T ss_dssp ECS------------------------------STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTC
T ss_pred cCC------------------------------CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCC
Confidence 110 023567899999999887777668899999987 55442 2333456
Q ss_pred ceeEEEEcCCCEEE-EEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcc
Q 012007 279 AINSVVAGFDSLVF-TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHL 357 (473)
Q Consensus 279 ~v~~l~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~ 357 (473)
.+..+++.+++.++ +...++.|..||.. +. .. ......+...+..+++++++.++++....+.|.+||... .
T Consensus 147 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~----~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g-~ 219 (300)
T 2qc5_A 147 YPAFITLGSDNALWFTENQNNSIGRITNT-GK----LE-EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTG-E 219 (300)
T ss_dssp CEEEEEECTTSSEEEEETTTTEEEEECTT-CC----EE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC-C
T ss_pred CceeEEECCCCCEEEEecCCCeEEEECCC-Cc----EE-EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCC-c
Confidence 78899998888444 44457889999873 11 11 112223445789999999998887777778899999842 2
Q ss_pred cccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCcc
Q 012007 358 SHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQR 435 (473)
Q Consensus 358 ~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~ 435 (473)
........+...+.++. ++|++.++...++.|..|+... . .. ...+......+.++++.+++.
T Consensus 220 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g-~-~~-~~~~~~~~~~~~~i~~~~~g~------------ 284 (300)
T 2qc5_A 220 ISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITNDN-T-IQ-EYQLQTENAEPHGITFGKDGS------------ 284 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTS-C-EE-EEECCSTTCCCCCEEECTTSC------------
T ss_pred EEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCCC-c-EE-EEECCccCCccceeEeCCCCC------------
Confidence 22111222333444554 4577666666678999999843 1 12 222333445689999999987
Q ss_pred EEEEEeeCCCcEEEEEc
Q 012007 436 WTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 436 ~~l~s~s~Dg~v~iW~i 452 (473)
++++.. . .|..++.
T Consensus 285 -l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 285 -VWFALK-C-KIGKLNL 298 (300)
T ss_dssp -EEEECS-S-EEEEEEE
T ss_pred -EEEEcc-C-ceEEeCC
Confidence 555554 4 6666664
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.57 E-value=3.5e-12 Score=118.84 Aligned_cols=238 Identities=13% Similarity=0.027 Sum_probs=150.7
Q ss_pred eeeeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCCc-cccccc-cCcccEEEEEEeCCCCEEEEEeCC----CeEEE
Q 012007 116 IGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK-EFSGFK-SNSGLVKAIIISGDSNKIFTGHQD----GKIRI 187 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~-~~~~~~-~h~~~V~~l~~s~~~~~l~s~~~d----g~i~v 187 (473)
...+..+...+.++.+ +|++++++..++.|.+||... .+..+. .+...+.+++++++|+++++...+ +.|.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~ 116 (333)
T 2dg1_A 37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA 116 (333)
T ss_dssp EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEE
Confidence 3445555555666665 478888888899999998653 233322 466789999999999888877666 68999
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC------CCCEEE
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW------DKTLKV 261 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~------dg~v~v 261 (473)
||..++......... .+...+.+++++++++++++... .+.|..
T Consensus 117 ~d~~~~~~~~~~~~~------------------------------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~ 166 (333)
T 2dg1_A 117 ATENGDNLQDIIEDL------------------------------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYY 166 (333)
T ss_dssp ECTTSCSCEEEECSS------------------------------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEE
T ss_pred EeCCCCEEEEEEccC------------------------------ccCCcccceEECCCCCEEEEeccccccCCCceEEE
Confidence 998876543111100 13456889999999987776653 245666
Q ss_pred EEcCCCeeeEEeecCCCceeEEEEcCCC-EE-EEEeCCCcEEEEeCcccCCCcce---eeeeeeccCCccEEEEEEccCC
Q 012007 262 WRISDCKCLESINAHDDAINSVVAGFDS-LV-FTGSADGTVKVWRRELQGKGTKH---CLAQVLLKHENAVTALAVNQES 336 (473)
Q Consensus 262 wd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l-~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~~~~~~~v~~l~~~~~~ 336 (473)
+|..+++... +..+...+..+++++++ .+ ++...++.|.+||+...+..... ........+ ..+..++++++|
T Consensus 167 ~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G 244 (333)
T 2dg1_A 167 VSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDD 244 (333)
T ss_dssp ECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTC
T ss_pred EeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCC
Confidence 6655444433 22233457889999997 45 45556889999998632211100 001111122 467889999999
Q ss_pred CEEEEeCCCCcEEEEecCCcccccceeecCc--------ceEEEEEecCCEEEEEeCCC
Q 012007 337 AVVYCGSSDGLVNFWECEKHLSHGGVLRGHK--------MAVLCLAAAGNLVFSGSADR 387 (473)
Q Consensus 337 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------~~v~~~~~~~~~l~s~~~dg 387 (473)
+++++...++.|.+||... ... ..+..+. ..-.+++++++.|+.++.++
T Consensus 245 ~l~v~~~~~~~v~~~d~~g-~~~-~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 245 NLYVAMYGQGRVLVFNKRG-YPI-GQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp CEEEEEETTTEEEEECTTS-CEE-EEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CEEEEEcCCCEEEEECCCC-CEE-EEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 9888877788999999853 222 2222221 23345556777777666553
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-11 Score=116.35 Aligned_cols=265 Identities=7% Similarity=0.004 Sum_probs=166.1
Q ss_pred cEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEe----------CCCeEEEEeCCCCCeeeEEeeccccccceeE
Q 012007 144 NIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGH----------QDGKIRIWKVSRKNASVHKRVGSLPTFKDYV 211 (473)
Q Consensus 144 ~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 211 (473)
.|.+||.. +.+..+.....+ .++++|||++|+.+. .++.|.+||..+.+......+......
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~---- 121 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF---- 121 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccc----
Confidence 77888864 333334333333 999999999999886 367899999987765544432200000
Q ss_pred eecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC--CCCEEEEEcCCCeeeEE-eecCCCceeEEEEcCC
Q 012007 212 KSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW--DKTLKVWRISDCKCLES-INAHDDAINSVVAGFD 288 (473)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~--dg~v~vwd~~~~~~~~~-~~~~~~~v~~l~~~~~ 288 (473)
.+......+.|+|+|++|+++.. ++.|.++| .+++.+.. +.... ++.+.++
T Consensus 122 ---------------------~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~ 175 (373)
T 2mad_H 122 ---------------------DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPG 175 (373)
T ss_pred ---------------------ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeC
Confidence 01123457899999999999874 47899999 99998877 65322 2333344
Q ss_pred C--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCcc-EEEEEEccCCCEEEEeCCCCcEEEEecCCcccc-ccee-
Q 012007 289 S--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENA-VTALAVNQESAVVYCGSSDGLVNFWECEKHLSH-GGVL- 363 (473)
Q Consensus 289 ~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~- 363 (473)
+ .+++.+.||.+.++|. .+............ ....+ .....+.+++..++..+.++.+.+.|+...... ...+
T Consensus 176 ~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~ 253 (373)
T 2mad_H 176 APSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAML-TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPID 253 (373)
T ss_pred CCceEEEEcCCCCEEEEEC-CCcEEEEEeccccc-cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeee
Confidence 3 6677788999999998 43321000000001 11122 233456666555444457789999998643211 1111
Q ss_pred -----------ecCcceEEEEEecCCEEEEEeC----------CCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCC
Q 012007 364 -----------RGHKMAVLCLAAAGNLVFSGSA----------DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDR 422 (473)
Q Consensus 364 -----------~~~~~~v~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 422 (473)
.........++++++.++++.. ++.|.++|..+ .+.+..+.. .....+++|+||+
T Consensus 254 ~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t---~~vv~~i~~-g~~p~~i~~s~Dg 329 (373)
T 2mad_H 254 ALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV---GQTSSQISL-GHDVDAISVAQDG 329 (373)
T ss_pred ecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC---CEEEEEEEC-CCCcCeEEECCCC
Confidence 1111223567788887777653 35799999988 456666543 3357999999998
Q ss_pred CCCcccccCCCccEEEEEee-CCCcEEEEEcCCCCCC
Q 012007 423 DHDHEYHQKGDQRWTVYSGS-LDKSVKVWRVSEHAPD 458 (473)
Q Consensus 423 ~~~~~~~~~~~~~~~l~s~s-~Dg~v~iW~i~~~~~~ 458 (473)
+. +++++. .++.|.+||+.+++..
T Consensus 330 ~~------------~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 330 GP------------DLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred Ce------------EEEEEcCCCCeEEEEECCCCCEE
Confidence 73 456655 5899999999987654
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.56 E-value=6.7e-13 Score=119.63 Aligned_cols=228 Identities=7% Similarity=0.008 Sum_probs=151.4
Q ss_pred EEecCCEEE-EeeCCCcEEEeeCCcccccc--ccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecccc
Q 012007 129 LAASGDLLY-TGSDSKNIRVWKNLKEFSGF--KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLP 205 (473)
Q Consensus 129 ~~~~g~~l~-tg~~dg~i~vwd~~~~~~~~--~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 205 (473)
+.++|++++ +...++.|.+|+........ ..+...+.+|+++++|+++++.. ++.|.+||......... ..
T Consensus 31 ~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~-~~---- 104 (270)
T 1rwi_B 31 VDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVL-PF---- 104 (270)
T ss_dssp ECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEEC-CC----
T ss_pred ECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeee-ec----
Confidence 345577666 54678899999865332221 22335688999999998666655 88999999876542111 00
Q ss_pred ccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEE
Q 012007 206 TFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVA 285 (473)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~ 285 (473)
.....+..++++++++++++...++.|.+|+..+.............+.++++
T Consensus 105 ---------------------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 105 ---------------------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp ---------------------------CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred ---------------------------CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 12356789999999987777777889999986655443322233346788999
Q ss_pred cCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceee
Q 012007 286 GFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLR 364 (473)
Q Consensus 286 ~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 364 (473)
.+++ ++++...++.|.+||..... .......+...+..|+++++|.++++...++.|.+||........ ...
T Consensus 158 ~~~g~l~v~~~~~~~i~~~~~~~~~------~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~ 230 (270)
T 1rwi_B 158 DNSGNVYVTDTDNNRVVKLEAESNN------QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF 230 (270)
T ss_dssp CTTCCEEEEEGGGTEEEEECTTTCC------EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC
T ss_pred eCCCCEEEEECCCCEEEEEecCCCc------eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc
Confidence 9887 44455567899999976321 111122233678999999999888888888999999987643221 111
Q ss_pred cCcceE--EEEEecCCEEEEEeCCCcEEEEecCC
Q 012007 365 GHKMAV--LCLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 365 ~~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
.+.... .+++++|+++++...++.|++|++..
T Consensus 231 ~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 231 TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence 222334 44456688888888899999999876
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-12 Score=123.07 Aligned_cols=219 Identities=8% Similarity=0.073 Sum_probs=146.4
Q ss_pred ccEEEEEEeCCCCEEEEEe---------CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEe
Q 012007 162 GLVKAIIISGDSNKIFTGH---------QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKI 232 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (473)
..+...++ ||++|+... .++.|.+||+.+++....
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l---------------------------------- 58 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI---------------------------------- 58 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----------------------------------
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----------------------------------
Confidence 45677777 888877642 256799999987653111
Q ss_pred eccCCeeEEEEcCCCCEEEEEeCCC-----CEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeC----------
Q 012007 233 RHYDAVSCLSLNAEQGLLYSGSWDK-----TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSA---------- 296 (473)
Q Consensus 233 ~~~~~v~~l~~~~~~~~l~s~s~dg-----~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~---------- 296 (473)
..+..++|+|+|++|+.++.++ .|.+||+.+++.......+ . +..+.|+|++ .|+.++.
T Consensus 59 ---~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~ 133 (347)
T 2gop_A 59 ---ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIF 133 (347)
T ss_dssp ---ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC------
T ss_pred ---ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEE
Confidence 3467899999999998887542 3888899888766555443 3 8999999998 5665553
Q ss_pred -----------------CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC-------cEEEEe
Q 012007 297 -----------------DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG-------LVNFWE 352 (473)
Q Consensus 297 -----------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-------~i~iwd 352 (473)
...|.+||+..+. . ...+.. . .+..++|+|+| +++++..++ ...||.
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~-----~-~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~ 204 (347)
T 2gop_A 134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEE-----V-IEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYI 204 (347)
T ss_dssp ---CCCC---------CEEEEEEEETTTTE-----E-EEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEE
T ss_pred EcccceeecCcccccCccceEEEEECCCCe-----E-EeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEE
Confidence 2568888886321 1 011122 2 67889999999 777775542 344444
Q ss_pred cCCcccccceeecCcceEEEEEecCCEEEEEeCC--------CcEEEEecCCCCceeEEEEecCCCCceeE-EEEecCCC
Q 012007 353 CEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSAD--------RNICLWRREESGAHSCLAVLTGHTGPVKC-LAVEEDRD 423 (473)
Q Consensus 353 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~ 423 (473)
+.++ ... .+..+ ..+..++++|++|+.++.+ ..|.+|| + ........+|...+.. +.|+ ++
T Consensus 205 ~d~~-~~~-~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~---~~~~~l~~~~~~~~~~~~~~s-dg- 274 (347)
T 2gop_A 205 WEDG-KEE-KMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--G---KEVMGILDEVDRGVGQAKIKD-GK- 274 (347)
T ss_dssp EETT-EEE-EEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--S---SCEEESSTTCCSEEEEEEEET-TE-
T ss_pred eCCC-ceE-EeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--C---CceEeccccCCcccCCccEEc-Cc-
Confidence 4332 222 22233 5556669999988877754 3677787 3 2344445566778886 8998 64
Q ss_pred CCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 424 HDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 424 ~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
++++++.|+.++|| +..
T Consensus 275 -------------~~~~~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 275 -------------VYFTLFEEGSVNLY-IWD 291 (347)
T ss_dssp -------------EEEEEEETTEEEEE-EES
T ss_pred -------------EEEEEecCCcEEEE-EcC
Confidence 68888999999999 874
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.8e-11 Score=109.65 Aligned_cols=239 Identities=8% Similarity=0.028 Sum_probs=161.1
Q ss_pred cCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCe
Q 012007 159 SNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAV 238 (473)
Q Consensus 159 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 238 (473)
.+...+.++++.++|+++++...++.|.+||.. +..... ... .+...+
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~-~~~------------------------------~~~~~~ 59 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEY-PLP------------------------------TPDAKV 59 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEE-ECS------------------------------STTCCE
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEe-cCC------------------------------cccCce
Confidence 345679999999999877776668899999987 442211 110 134568
Q ss_pred eEEEEcCCCCEEEEEeCCCCEEEEEcCCCee-eEEeecCCCceeEEEEcCCCEE-EEEeCCCcEEEEeCcccCCCcceee
Q 012007 239 SCLSLNAEQGLLYSGSWDKTLKVWRISDCKC-LESINAHDDAINSVVAGFDSLV-FTGSADGTVKVWRRELQGKGTKHCL 316 (473)
Q Consensus 239 ~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~-~~~~~~~~~~v~~l~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~ 316 (473)
.++++++++.++++...++.|..||.. ++. ...+......+..+++.+++.+ ++...++.|.+||.. +. ..
T Consensus 60 ~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~----~~- 132 (299)
T 2z2n_A 60 MCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD-GK----IR- 132 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC----EE-
T ss_pred eeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCC-CC----EE-
Confidence 899999999887777768889999986 332 1222234567889999988844 444567899999872 11 11
Q ss_pred eeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEec
Q 012007 317 AQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRR 394 (473)
Q Consensus 317 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~ 394 (473)
..........+..+++.+++.++++...++.|..||. ++.............+..+. ++|+++++...++.|.+|+.
T Consensus 133 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 133 EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT 211 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC
Confidence 1112234567899999999988888877889999998 43322111222233344444 45777777667889999998
Q ss_pred CCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 395 EESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 395 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
++. .. ......+...+.++++++++. ++++...++.|.+|+..
T Consensus 212 -~g~-~~-~~~~~~~~~~~~~i~~~~~g~-------------l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 212 -SGE-IT-EFKIPTPNARPHAITAGAGID-------------LWFTEWGANKIGRLTSN 254 (299)
T ss_dssp -TCC-EE-EEECSSTTCCEEEEEECSTTC-------------EEEEETTTTEEEEEETT
T ss_pred -CCc-EE-EEECCCCCCCceeEEECCCCC-------------EEEeccCCceEEEECCC
Confidence 432 12 122334556789999999987 66666577889999973
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.54 E-value=6.7e-12 Score=116.96 Aligned_cols=280 Identities=10% Similarity=0.071 Sum_probs=178.7
Q ss_pred EecCCEEEEeeC-----CCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEe----------CCCeEEEEeCCC
Q 012007 130 AASGDLLYTGSD-----SKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGH----------QDGKIRIWKVSR 192 (473)
Q Consensus 130 ~~~g~~l~tg~~-----dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~dg~i~vwd~~~ 192 (473)
.++++.+++... ++.|.+.|.. +.+..+..-..+ .++++|||++|+++. .++.|.+||..+
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t 118 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT 118 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence 356777776654 5789999865 334444433444 499999999988876 367899999999
Q ss_pred CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC--CCCEEEEEcCCCeee
Q 012007 193 KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW--DKTLKVWRISDCKCL 270 (473)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~--dg~v~vwd~~~~~~~ 270 (473)
.+......+..-.. .........+.|+|||++|+++.. ++.|.++|+.+++.+
T Consensus 119 ~~v~~~I~v~~g~r-------------------------~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv 173 (386)
T 3sjl_D 119 LLPTADIELPDAPR-------------------------FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK 173 (386)
T ss_dssp CCEEEEEEETTCCC-------------------------CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred CeEEEEEECCCccc-------------------------cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEE
Confidence 88765554321000 001224456899999999999874 688999999999999
Q ss_pred EEeecCCCceeEEEEcCC-CEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEE-EEEEc-cCCCEEEEeCCCCc
Q 012007 271 ESINAHDDAINSVVAGFD-SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVT-ALAVN-QESAVVYCGSSDGL 347 (473)
Q Consensus 271 ~~~~~~~~~v~~l~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~-~~~~~l~~~~~dg~ 347 (473)
.++..... . ..+... ..+++.+.||.+.+.++...++.. ......+......+. ...|. ++|++++ .+.+|.
T Consensus 174 ~tI~v~g~--~-~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~-~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~ 248 (386)
T 3sjl_D 174 RMLDVPDC--Y-HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE-ITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGK 248 (386)
T ss_dssp EEEECCSE--E-EEEEEETTEEEEEETTSCEEEEECCSSSCCE-EEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSE
T ss_pred EEEECCCc--c-eeecCCCceeEEECCCCCEEEEECCCCCeEE-EeecceeccccccccccceeEcCCCcEEE-EeCCCE
Confidence 98864321 1 222222 267788899999999987533211 100011111112221 23554 6776655 445799
Q ss_pred EEEEecCCccc-cccee------------ecCcceEEEEEecCCEEEEEeC----------CCcEEEEecCCCCceeEEE
Q 012007 348 VNFWECEKHLS-HGGVL------------RGHKMAVLCLAAAGNLVFSGSA----------DRNICLWRREESGAHSCLA 404 (473)
Q Consensus 348 i~iwd~~~~~~-~~~~~------------~~~~~~v~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~ 404 (473)
|.+.|+..... ..... .........++++++.++.... .+.|.++|+.+ .+.+.
T Consensus 249 V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t---~kv~~ 325 (386)
T 3sjl_D 249 IHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT---GERLA 325 (386)
T ss_dssp EEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT---CCEEE
T ss_pred EEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC---CeEEE
Confidence 99999865421 11111 1122334667788887777643 25799999998 45555
Q ss_pred EecCCCCceeEEEEecCCCCCcccccCCCccEEEEE-eeCCCcEEEEEcCCCCC
Q 012007 405 VLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYS-GSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 405 ~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s-~s~Dg~v~iW~i~~~~~ 457 (473)
.+.- ...+..|++++|++. +|++ ...++.|.++|..+++.
T Consensus 326 ~i~v-g~~~~~lavs~D~~~------------~ly~tn~~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 326 KFEM-GHEIDSINVSQDEKP------------LLYALSTGDKTLYIHDAESGEE 366 (386)
T ss_dssp EEEE-EEEECEEEECSSSSC------------EEEEEETTTTEEEEEETTTCCE
T ss_pred EEEC-CCCcceEEECCCCCe------------EEEEEcCCCCeEEEEECCCCcE
Confidence 5432 236889999999853 4444 55699999999988763
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=7.6e-11 Score=116.93 Aligned_cols=278 Identities=13% Similarity=0.115 Sum_probs=171.9
Q ss_pred EEEEEecCCEEEEeeCCCcEEEeeCC----ccccccccCcccEEEEEEe----CCCCEEEEEeC-CCeEEEEeCCCCCee
Q 012007 126 IYSLAASGDLLYTGSDSKNIRVWKNL----KEFSGFKSNSGLVKAIIIS----GDSNKIFTGHQ-DGKIRIWKVSRKNAS 196 (473)
Q Consensus 126 V~~~~~~g~~l~tg~~dg~i~vwd~~----~~~~~~~~h~~~V~~l~~s----~~~~~l~s~~~-dg~i~vwd~~~~~~~ 196 (473)
-..+++||+++++++.|+.|.+||+. +.+..+... .....++|+ |||++++++.. ++.|.|+|..+.+..
T Consensus 201 ~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~ 279 (567)
T 1qks_A 201 ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK 279 (567)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEE
T ss_pred ceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEE
Confidence 44567789999999999999999984 223333332 346799999 69999887765 599999999888776
Q ss_pred eEEeecccc----------ccceeEeecCCCcceEEEeecce-------------eeEeeccCCeeEEEEcCCCCEEEEE
Q 012007 197 VHKRVGSLP----------TFKDYVKSSVNPKNYVEVRRNRS-------------VLKIRHYDAVSCLSLNAEQGLLYSG 253 (473)
Q Consensus 197 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~v~~l~~~~~~~~l~s~ 253 (473)
......... ....+..+...+..++....... ...+.......++.|+|++++|+++
T Consensus 280 ~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va 359 (567)
T 1qks_A 280 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITA 359 (567)
T ss_dssp EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEE
T ss_pred EEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEE
Confidence 655433211 11112222111111111111111 1222344556788999999998877
Q ss_pred e-CCCCEEEEEcCCCeeeEEeec-----CCCceeEEEEcCC-CEEE-EEe-CCCcEEEEeCcccCC-CcceeeeeeeccC
Q 012007 254 S-WDKTLKVWRISDCKCLESINA-----HDDAINSVVAGFD-SLVF-TGS-ADGTVKVWRRELQGK-GTKHCLAQVLLKH 323 (473)
Q Consensus 254 s-~dg~v~vwd~~~~~~~~~~~~-----~~~~v~~l~~~~~-~~l~-s~~-~dg~i~vwd~~~~~~-~~~~~~~~~~~~~ 323 (473)
. .++.|.++|+.+++.+..+.. |.+.-.. .+.|+ +.++ +.. .++.|.++|....+. ......+..+...
T Consensus 360 ~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~ 438 (567)
T 1qks_A 360 ANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL 438 (567)
T ss_dssp EGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred eCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC
Confidence 6 578899999999998877654 3221111 24676 4444 443 468999999874221 1113334444443
Q ss_pred CccEEEEEEccCCCEEEEeCC-------CCcEEEEecCCc-----ccccceee--------cCcceE--EEEEecCCEEE
Q 012007 324 ENAVTALAVNQESAVVYCGSS-------DGLVNFWECEKH-----LSHGGVLR--------GHKMAV--LCLAAAGNLVF 381 (473)
Q Consensus 324 ~~~v~~l~~~~~~~~l~~~~~-------dg~i~iwd~~~~-----~~~~~~~~--------~~~~~v--~~~~~~~~~l~ 381 (473)
...-..+..+|++++|++... .+.|.++|+.+. ......+. .....+ ..++++|++++
T Consensus 439 g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 518 (567)
T 1qks_A 439 GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVW 518 (567)
T ss_dssp CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEE
T ss_pred CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEE
Confidence 333345778999999998763 358999999865 21111221 112233 44556788877
Q ss_pred EEe-----CCCcEEEEecCCCCceeEEEEecC
Q 012007 382 SGS-----ADRNICLWRREESGAHSCLAVLTG 408 (473)
Q Consensus 382 s~~-----~dg~i~iwd~~~~~~~~~~~~~~~ 408 (473)
.+. .++.|.|+|..+ .+.+..+..
T Consensus 519 ~s~~~~~~~~~~i~v~D~~t---~~~~~~i~~ 547 (567)
T 1qks_A 519 FSVWNGKDQESALVVVDDKT---LELKHVIKD 547 (567)
T ss_dssp EEEECCTTSCCEEEEEETTT---TEEEEEECC
T ss_pred EEeecCCCCCCcEEEEECCC---ceEEEEeCC
Confidence 763 378999999988 466666654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=7.9e-12 Score=128.90 Aligned_cols=206 Identities=9% Similarity=0.013 Sum_probs=137.6
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCC-----CEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCc--------
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDK-----TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGT-------- 299 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg-----~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~-------- 299 (473)
|...+..++|+|||++|+.+..++ .|++||+.+++.+.....+ ..+..++|+|++ .|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccc
Confidence 334578899999999998776543 8999999999877643322 236789999998 6777777655
Q ss_pred --------EEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC-----CCcEEEEecCC------ccccc
Q 012007 300 --------VKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-----DGLVNFWECEK------HLSHG 360 (473)
Q Consensus 300 --------i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-----dg~i~iwd~~~------~~~~~ 360 (473)
|++|++.... ....++.....+...+..+.|+|||++|+..+. +..|.+||+.+ +....
T Consensus 202 ~~~~~~~~v~~~~l~t~~--~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 279 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQ--SEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW 279 (710)
T ss_dssp CCCCCCCEEEEEETTSCG--GGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred cccCCCCEEEEEECCCCc--ccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence 9999986432 111222223335566889999999999887654 56899999876 32222
Q ss_pred ceeecCc-ceEEEEEecCCEEEEEeCC----CcEEEEecCCCCceeEEEEecCCCC--ceeEEEEecCCCCCcccccCCC
Q 012007 361 GVLRGHK-MAVLCLAAAGNLVFSGSAD----RNICLWRREESGAHSCLAVLTGHTG--PVKCLAVEEDRDHDHEYHQKGD 433 (473)
Q Consensus 361 ~~~~~~~-~~v~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~--~V~~l~~~~~~~~~~~~~~~~~ 433 (473)
..+..+. .....++++|+.|+..+.+ +.|.+||+.++... ....+..|.. .|..++|++++.
T Consensus 280 ~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~---------- 348 (710)
T 2xdw_A 280 VKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES-KWKVLVPEHEKDVLEWVACVRSNF---------- 348 (710)
T ss_dssp EEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGG-GCEEEECCCSSCEEEEEEEETTTE----------
T ss_pred EEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-cceeccCCCCCCeEEEEEEEcCCE----------
Confidence 3333333 2334578888887776653 35999999874311 1233334433 688899986665
Q ss_pred ccEEEEEeeCCCc--EEEEEcCCCC
Q 012007 434 QRWTVYSGSLDKS--VKVWRVSEHA 456 (473)
Q Consensus 434 ~~~~l~s~s~Dg~--v~iW~i~~~~ 456 (473)
++++...|+. |.+|++..++
T Consensus 349 ---lv~~~~~~g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 349 ---LVLCYLHDVKNTLQLHDLATGA 370 (710)
T ss_dssp ---EEEEEEETTEEEEEEEETTTCC
T ss_pred ---EEEEEEECCEEEEEEEECCCCC
Confidence 8888888985 4556654443
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.3e-11 Score=113.02 Aligned_cols=230 Identities=11% Similarity=0.023 Sum_probs=150.0
Q ss_pred EEEEEecCCEE-EEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCeeeEEee
Q 012007 126 IYSLAASGDLL-YTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGH-QDGKIRIWKVSRKNASVHKRV 201 (473)
Q Consensus 126 V~~~~~~g~~l-~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~ 201 (473)
...+.++++.+ ++...++.|.+||.. +.+..+. .......+++++++ .|+.+. .++.|.+||..+++.......
T Consensus 46 ~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~ 123 (328)
T 3dsm_A 46 AQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIEC 123 (328)
T ss_dssp EEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEc
Confidence 44566665544 444557899999975 3344443 34678899999898 455555 789999999998875544433
Q ss_pred ccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe--CCCCEEEEEcCCCeeeEEeecCCCc
Q 012007 202 GSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS--WDKTLKVWRISDCKCLESINAHDDA 279 (473)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s--~dg~v~vwd~~~~~~~~~~~~~~~~ 279 (473)
.... +.......+++ ++..|+++. .++.|.++|+.+++.+..+... ..
T Consensus 124 g~~~---------------------------~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~ 173 (328)
T 3dsm_A 124 PDMD---------------------------MESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQ 173 (328)
T ss_dssp TTCC---------------------------TTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SC
T ss_pred CCcc---------------------------ccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CC
Confidence 2100 01123445666 455666665 4889999999999988887753 34
Q ss_pred eeEEEEcCCCEEEEEeC-C----------CcEEEEeCcccCCCcceeeeeeec-cCCccEEEEEEccCCCEEEEeCCCCc
Q 012007 280 INSVVAGFDSLVFTGSA-D----------GTVKVWRRELQGKGTKHCLAQVLL-KHENAVTALAVNQESAVVYCGSSDGL 347 (473)
Q Consensus 280 v~~l~~~~~~~l~s~~~-d----------g~i~vwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~dg~ 347 (473)
...+.+.+++.++.++. + +.|.++|..... ....+. ........++++|+++.|+++.. .
T Consensus 174 p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~------v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~ 245 (328)
T 3dsm_A 174 PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT------VEKQFKFKLGDWPSEVQLNGTRDTLYWINN--D 245 (328)
T ss_dssp BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE------EEEEEECCTTCCCEEEEECTTSCEEEEESS--S
T ss_pred ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe------EEEEEecCCCCCceeEEEecCCCEEEEEcc--E
Confidence 56788899885555444 3 689999986321 122221 11236789999999999988765 8
Q ss_pred EEEEecCCcccccc-eeec--CcceEEEEEec-CCEEEEE----eCCCcEEEEecC
Q 012007 348 VNFWECEKHLSHGG-VLRG--HKMAVLCLAAA-GNLVFSG----SADRNICLWRRE 395 (473)
Q Consensus 348 i~iwd~~~~~~~~~-~~~~--~~~~v~~~~~~-~~~l~s~----~~dg~i~iwd~~ 395 (473)
|.+||..+...... .... ....-.+++++ +.++++. ..++.|.+||..
T Consensus 246 v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 246 IWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 99999987554221 1221 22233455554 5566665 568899999987
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-11 Score=110.00 Aligned_cols=240 Identities=9% Similarity=-0.002 Sum_probs=158.8
Q ss_pred CCEEEEeeCCCcEEEeeCC--ccccccccCc-ccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccce
Q 012007 133 GDLLYTGSDSKNIRVWKNL--KEFSGFKSNS-GLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKD 209 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~-~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 209 (473)
+++|++++.|+.|.+||.. +.+..+..+. ..+.+++++|+|++|+ +.++.|..||. +++........
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~------- 74 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAP------- 74 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECC-------
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCC-------
Confidence 6789999999999999974 4455555554 4789999999999888 45778999999 66655444321
Q ss_pred eEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC-CCCEEEEEcCCCeeeEEeec------CCCceeE
Q 012007 210 YVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISDCKCLESINA------HDDAINS 282 (473)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~------~~~~v~~ 282 (473)
....+.++.+.++|+++++.+. ++.|..+|. +++.+..+.. +......
T Consensus 75 ------------------------~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~ 129 (276)
T 3no2_A 75 ------------------------AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQ 129 (276)
T ss_dssp ------------------------TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSC
T ss_pred ------------------------CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccC
Confidence 2245778899999999999887 777888875 7887776652 1123445
Q ss_pred EEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccc
Q 012007 283 VVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGG 361 (473)
Q Consensus 283 l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 361 (473)
+...+++ ++++...++.|..||.. ++. +..+.. ...+.++.+.+++++++++..++.|..+|..++...-.
T Consensus 130 v~~~~~G~~lv~~~~~~~v~~~d~~-G~~------~w~~~~-~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~ 201 (276)
T 3no2_A 130 INKNKKGNYLVPLFATSEVREIAPN-GQL------LNSVKL-SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRR 201 (276)
T ss_dssp CEECTTSCEEEEETTTTEEEEECTT-SCE------EEEEEC-SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEE
T ss_pred ceECCCCCEEEEecCCCEEEEECCC-CCE------EEEEEC-CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEE
Confidence 5667776 78888889999999986 321 122221 23455678889999999998888999999886554322
Q ss_pred eee----c-CcceEE--EEEecCCEEEEEeCC--------CcEEEEecCCCCceeEEEEecCCC--CceeEEE
Q 012007 362 VLR----G-HKMAVL--CLAAAGNLVFSGSAD--------RNICLWRREESGAHSCLAVLTGHT--GPVKCLA 417 (473)
Q Consensus 362 ~~~----~-~~~~v~--~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~h~--~~V~~l~ 417 (473)
.-. + ....+. .+.++|+++++.... +..+++++... .+.+..+..+. +.|..++
T Consensus 202 ~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~--g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 202 VNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSE--GKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp EEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTT--SBEEEEECCTTTSCCCCEEE
T ss_pred ecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCC--CCEEEEecCcccccceeeee
Confidence 211 1 111133 334568877776421 23456666432 35555555432 3445443
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.48 E-value=6.6e-11 Score=108.98 Aligned_cols=242 Identities=9% Similarity=0.052 Sum_probs=153.7
Q ss_pred cccEEEEEEeCCCCEEEE-------EeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee
Q 012007 161 SGLVKAIIISGDSNKIFT-------GHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233 (473)
Q Consensus 161 ~~~V~~l~~s~~~~~l~s-------~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (473)
-....+++|+++++++++ +..++.|.+||..+++...... .. ..+
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~---------------------------~~~ 68 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-PE---------------------------VNG 68 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-CE---------------------------ETT
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-cc---------------------------cCC
Confidence 345689999999987777 5778899999987765432110 00 001
Q ss_pred ccCCeeEEEEcCC-CCEEEEEeCCCCEEEEEcCCCeeeEE-eec----CCCceeEEEEcCCCEEEEEe-CC---------
Q 012007 234 HYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCKCLES-INA----HDDAINSVVAGFDSLVFTGS-AD--------- 297 (473)
Q Consensus 234 ~~~~v~~l~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~-~~~----~~~~v~~l~~~~~~~l~s~~-~d--------- 297 (473)
+...+.+++++++ ++ |+.++.++.|.+||.. ++.... ... ....+.++++.+++.++.++ .+
T Consensus 69 ~~~~~~~i~~~~~~g~-l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQ-LFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EECCEEEEEECSSSSE-EEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred CCCCCceEEEecCCCc-EEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 3456889999998 65 4445545579999988 665433 221 12357899999988544444 33
Q ss_pred ------CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEc----cCCCEEEE-eCCCCcEEEEecC-Cccc----ccc
Q 012007 298 ------GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVN----QESAVVYC-GSSDGLVNFWECE-KHLS----HGG 361 (473)
Q Consensus 298 ------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~----~~~~~l~~-~~~dg~i~iwd~~-~~~~----~~~ 361 (473)
+.|..||.. + .. .....+......++++ ++++.|+. ...++.|.+||.. .+.. ...
T Consensus 147 ~~~~~~~~l~~~~~~--g--~~----~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~ 218 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD--G--QM----IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG 218 (314)
T ss_dssp TTSSSCEEEEEECTT--S--CE----EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE
T ss_pred cccCCCCeEEEECCC--C--CE----EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEE
Confidence 456666643 1 11 1112223456889999 99965544 4668899999976 2211 111
Q ss_pred eeecCc-ceE--EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEE
Q 012007 362 VLRGHK-MAV--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTV 438 (473)
Q Consensus 362 ~~~~~~-~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l 438 (473)
.+.++. ... ++++++|+++++...++.|.+||..++ +.+..+..+...+.+++|++++.. ++
T Consensus 219 ~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~~~i~~~~dg~~------------l~ 283 (314)
T 1pjx_A 219 HIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG---QPKMRIRCPFEKPSNLHFKPQTKT------------IF 283 (314)
T ss_dssp ECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB---SCSEEEECSSSCEEEEEECTTSSE------------EE
T ss_pred ECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCC---cEeEEEeCCCCCceeEEECCCCCE------------EE
Confidence 122222 233 344556888888778899999998853 333444455678999999998872 44
Q ss_pred EEeeCCCcEEEEEcCCC
Q 012007 439 YSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 439 ~s~s~Dg~v~iW~i~~~ 455 (473)
++...++.|..|++...
T Consensus 284 v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 284 VTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEETTTTEEEEEECSSC
T ss_pred EEeCCCCeEEEEeCCCC
Confidence 55556789999998753
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.4e-12 Score=129.26 Aligned_cols=200 Identities=6% Similarity=-0.035 Sum_probs=131.6
Q ss_pred ccCCeeEEEEcCCCCEEEE-----EeCCCCEEEEEcCCCeeeEEeecCCCce--eEEEEcCCC-EEEEEeCCCc------
Q 012007 234 HYDAVSCLSLNAEQGLLYS-----GSWDKTLKVWRISDCKCLESINAHDDAI--NSVVAGFDS-LVFTGSADGT------ 299 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s-----~s~dg~v~vwd~~~~~~~~~~~~~~~~v--~~l~~~~~~-~l~s~~~dg~------ 299 (473)
|...+..++|+|||++|+. |+.+..|++||+.+++.+. ..+...+ ..++|+|++ .|+.++.|..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccc
Confidence 4456889999999999983 4445689999999988651 1121222 678999998 7777777665
Q ss_pred -------EEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC----cEEEEecCCcccccceeecCcc
Q 012007 300 -------VKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG----LVNFWECEKHLSHGGVLRGHKM 368 (473)
Q Consensus 300 -------i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~ 368 (473)
|++|++..... ...++.....+...+..+.|+|+|++|+..+.++ .|.+||..++. ..........
T Consensus 197 ~~~~~~~v~~~~l~t~~~--~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~ 273 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPS--KDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGA 273 (695)
T ss_dssp GGGGGCEEEEEETTSCGG--GCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSC
T ss_pred cCCCCCEEEEEECCCCch--hceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCc
Confidence 99999864321 1123333344556789999999999988877665 67777664432 2222222222
Q ss_pred eEEEEEecCCEEEEEeC----CCcEEEEecCCCCceeEEEEecCC-CCceeEEEEecCCCCCcccccCCCccEEEEEeeC
Q 012007 369 AVLCLAAAGNLVFSGSA----DRNICLWRREESGAHSCLAVLTGH-TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSL 443 (473)
Q Consensus 369 ~v~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~ 443 (473)
....+.++|. |+..+. ++.|.+||+.++........+..+ ...|..++|+ ++. ++++...
T Consensus 274 ~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~-------------lv~~~~~ 338 (695)
T 2bkl_A 274 KYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGH-------------LSLEYLK 338 (695)
T ss_dssp CEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTE-------------EEEEEEE
T ss_pred eEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCE-------------EEEEEEE
Confidence 3333446777 544443 578999999774321112223333 4568888888 444 8899999
Q ss_pred CCcEEEEEcC
Q 012007 444 DKSVKVWRVS 453 (473)
Q Consensus 444 Dg~v~iW~i~ 453 (473)
|+..+||.+.
T Consensus 339 dg~~~l~~~~ 348 (695)
T 2bkl_A 339 DATSEVRVAT 348 (695)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEEEe
Confidence 9999998776
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-11 Score=115.14 Aligned_cols=233 Identities=11% Similarity=0.105 Sum_probs=157.1
Q ss_pred ccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE
Q 012007 162 GLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL 241 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 241 (473)
.....|+|+++++++++...++.|++||..++....... ...... +
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~---------------------------------~~~~~~-i 176 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP---------------------------------GFKGGK-P 176 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE---------------------------------TCCBCB-C
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec---------------------------------cCCCCc-e
Confidence 467899999999877777777999999998765433221 122233 8
Q ss_pred EEcCCCCEEEEEeCCC--CEEEEEcCCCeeeEEe----ecCCCceeEEEEcC-CCEEEEEeCCCcEEEEeCcccCCCcce
Q 012007 242 SLNAEQGLLYSGSWDK--TLKVWRISDCKCLESI----NAHDDAINSVVAGF-DSLVFTGSADGTVKVWRRELQGKGTKH 314 (473)
Q Consensus 242 ~~~~~~~~l~s~s~dg--~v~vwd~~~~~~~~~~----~~~~~~v~~l~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~ 314 (473)
+|+++++.|+++..++ .|.+|+...+.....+ ......+.++++++ ++.|+.+..++.|..||..... .
T Consensus 177 a~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~----~ 252 (409)
T 3hrp_A 177 AVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE----V 252 (409)
T ss_dssp EECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC----E
T ss_pred eEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC----E
Confidence 9999999999998866 7888988765543333 22456678899999 6777777788899999986322 1
Q ss_pred eeeee--eccCCccE--EEEEEccC-CCEEEEeCCCCcEEEEecCCcccccceeecCc-----------------ceEEE
Q 012007 315 CLAQV--LLKHENAV--TALAVNQE-SAVVYCGSSDGLVNFWECEKHLSHGGVLRGHK-----------------MAVLC 372 (473)
Q Consensus 315 ~~~~~--~~~~~~~v--~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~v~~ 372 (473)
..... ..++...- ..++|+|+ +.++++-..++.|+.|+...... .+.++. ..-.+
T Consensus 253 ~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~---~~~g~~~~~g~~dg~~~~~~~~~P~gia 329 (409)
T 3hrp_A 253 TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECE---WFCGSATQKTVQDGLREEALFAQPNGMT 329 (409)
T ss_dssp EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE---EEEECTTCCSCBCEEGGGCBCSSEEEEE
T ss_pred EEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE---EEEeCCCCCCcCCCcccccEeCCCeEEE
Confidence 11100 11121111 28999995 66666667788999999765311 122211 22355
Q ss_pred EEecCCEEEEEe-CCCcEEEEecCCCCceeEEEEecCC---------------CCceeEEEEecCCCCCcccccCCCccE
Q 012007 373 LAAAGNLVFSGS-ADRNICLWRREESGAHSCLAVLTGH---------------TGPVKCLAVEEDRDHDHEYHQKGDQRW 436 (473)
Q Consensus 373 ~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~h---------------~~~V~~l~~~~~~~~~~~~~~~~~~~~ 436 (473)
++++|+++++-. .++.|+.|++.++ . +..+.++ -.....|++++++.
T Consensus 330 ~d~dG~lyvad~~~~~~I~~~~~~~G---~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~------------- 392 (409)
T 3hrp_A 330 VDEDGNFYIVDGFKGYCLRKLDILDG---Y-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG------------- 392 (409)
T ss_dssp ECTTCCEEEEETTTTCEEEEEETTTT---E-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE-------------
T ss_pred EeCCCCEEEEeCCCCCEEEEEECCCC---E-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC-------------
Confidence 666788777777 7899999997663 2 2333332 23578999999976
Q ss_pred EEEEeeCCCcEEEEEc
Q 012007 437 TVYSGSLDKSVKVWRV 452 (473)
Q Consensus 437 ~l~s~s~Dg~v~iW~i 452 (473)
++++-..++.|+.+++
T Consensus 393 lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 393 YWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEESTTCEEEEEEE
T ss_pred EEEEECCCCeEEEEEe
Confidence 7777778888988775
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.5e-12 Score=120.38 Aligned_cols=171 Identities=9% Similarity=-0.026 Sum_probs=123.5
Q ss_pred EEEEecCCEEEEeeCCCcEEEeeCCccc------------cccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC
Q 012007 127 YSLAASGDLLYTGSDSKNIRVWKNLKEF------------SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKN 194 (473)
Q Consensus 127 ~~~~~~g~~l~tg~~dg~i~vwd~~~~~------------~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~ 194 (473)
.+++....++++|+.++ ++||++.... .....+.. |+.|+| |+++|+++ .++.|++||+.+..
T Consensus 43 Lais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~ 117 (388)
T 1xip_A 43 LDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELS 117 (388)
T ss_dssp EEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTT
T ss_pred EEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhh
Confidence 37777888999999985 5669743111 12234566 999999 88999998 88999999998765
Q ss_pred eeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee
Q 012007 195 ASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN 274 (473)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 274 (473)
...... .|...+.++.+.+. .+++++.||.|.+||+.++....
T Consensus 118 ~~~~~~--------------------------------~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~--- 160 (388)
T 1xip_A 118 EFRTVT--------------------------------SFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ--- 160 (388)
T ss_dssp CEEEEE--------------------------------ECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE---
T ss_pred ccCccc--------------------------------eeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc---
Confidence 322211 25566777777654 38889999999999999877653
Q ss_pred cCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeee--eeec---cCCccEEEEEEccCCCEEEE
Q 012007 275 AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLA--QVLL---KHENAVTALAVNQESAVVYC 341 (473)
Q Consensus 275 ~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~~---~~~~~v~~l~~~~~~~~l~~ 341 (473)
+...|.|++|+|+| ++.|..||.+++|+........+..+. ..+. +|...|.+|.|.+++.++++
T Consensus 161 -~~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 161 -LAQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp -EEESEEEEEECSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred -ccCCceEEEEcCCc-eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 34689999999999 788999999999987632210010110 0112 47889999999999988876
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.7e-11 Score=111.86 Aligned_cols=279 Identities=8% Similarity=0.017 Sum_probs=178.2
Q ss_pred ecCCEEEEeeCC-----CcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEe----------CCCeEEEEeCCCC
Q 012007 131 ASGDLLYTGSDS-----KNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGH----------QDGKIRIWKVSRK 193 (473)
Q Consensus 131 ~~g~~l~tg~~d-----g~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~dg~i~vwd~~~~ 193 (473)
++++.+++.... +.|.++|.. +.+..+..-..+ .++++|||++|+.+. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 356666655542 689999965 344444433444 899999999988876 3678999999998
Q ss_pred CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC--CCCEEEEEcCCCeeeE
Q 012007 194 NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW--DKTLKVWRISDCKCLE 271 (473)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~--dg~v~vwd~~~~~~~~ 271 (473)
+......+...... ........+.|+|||++|+++.. ++.|.+.|+.+++.+.
T Consensus 160 ~vv~~I~v~g~~r~-------------------------~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~ 214 (426)
T 3c75_H 160 LPIADIELPDAPRF-------------------------LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDR 214 (426)
T ss_dssp CEEEEEEETTCCCC-------------------------CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred cEEEEEECCCcccc-------------------------ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEE
Confidence 87665543210000 01123446889999999999875 5789999999999998
Q ss_pred EeecCCCceeEEEEcCC--CEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCcc-EEEEEEccCCCEEEEeCCCCcE
Q 012007 272 SINAHDDAINSVVAGFD--SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENA-VTALAVNQESAVVYCGSSDGLV 348 (473)
Q Consensus 272 ~~~~~~~~v~~l~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~l~~~~~dg~i 348 (473)
.+..... ....|+ ..+++.+.||.+.+.+...+.. ... ....+.....+ ...+.+.+++..++.....+.|
T Consensus 215 ~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v-~~~-~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V 288 (426)
T 3c75_H 215 MLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGET-KVT-NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKI 288 (426)
T ss_dssp EEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCC-EEE-ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEE
T ss_pred EEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcE-EEE-eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcE
Confidence 8875321 222232 3667777889888888732211 100 00011111111 1235678888877777778999
Q ss_pred EEEecCCcccc-cce------------eecCcceEEEEEecCCEEEEEeC----------CCcEEEEecCCCCceeEEEE
Q 012007 349 NFWECEKHLSH-GGV------------LRGHKMAVLCLAAAGNLVFSGSA----------DRNICLWRREESGAHSCLAV 405 (473)
Q Consensus 349 ~iwd~~~~~~~-~~~------------~~~~~~~v~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~ 405 (473)
.+.|....... ... ..........++++++.+++... ++.|.++|..+ .+.+..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T---~kvv~~ 365 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET---GERINK 365 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT---CCEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC---CeEEEE
Confidence 99998543210 000 01111223578889887776642 35799999998 455555
Q ss_pred ecCCCCceeEEEEecCCCCCcccccCCCccEEEEEee-CCCcEEEEEcCCCCCC
Q 012007 406 LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS-LDKSVKVWRVSEHAPD 458 (473)
Q Consensus 406 ~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s-~Dg~v~iW~i~~~~~~ 458 (473)
+.. .....+|+|+|+++. ++++.. .++.|.|+|+.+.+..
T Consensus 366 I~v-g~~P~gia~spDg~~------------~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 366 IEL-GHEIDSINVSQDAEP------------LLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp EEE-EEEECEEEECCSSSC------------EEEEEETTTTEEEEEETTTCCEE
T ss_pred EEC-CCCcCeEEEccCCCE------------EEEEEcCCCCeEEEEECCCCCEE
Confidence 542 224789999999872 455555 6999999999988654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.43 E-value=5.3e-11 Score=109.64 Aligned_cols=234 Identities=6% Similarity=0.041 Sum_probs=146.9
Q ss_pred EecCCEEEE-------eeCCCcEEEeeCC-cccccccc-----CcccEEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCe
Q 012007 130 AASGDLLYT-------GSDSKNIRVWKNL-KEFSGFKS-----NSGLVKAIIISGD-SNKIFTGHQDGKIRIWKVSRKNA 195 (473)
Q Consensus 130 ~~~g~~l~t-------g~~dg~i~vwd~~-~~~~~~~~-----h~~~V~~l~~s~~-~~~l~s~~~dg~i~vwd~~~~~~ 195 (473)
.++|.++++ +..++.|.+||.. ..+..+.. +...+.+++++++ +++++ ++..+.|.+||.. ++.
T Consensus 26 ~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~~~l~~~d~~-g~~ 103 (314)
T 1pjx_A 26 DKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRLGLLVVQTD-GTF 103 (314)
T ss_dssp CTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EETTTEEEEEETT-SCE
T ss_pred CCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EECCCCEEEEeCC-CCE
Confidence 345777777 6778899999854 33333322 4567999999999 65444 4445578999987 543
Q ss_pred eeE-EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC---------------CCE
Q 012007 196 SVH-KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD---------------KTL 259 (473)
Q Consensus 196 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d---------------g~v 259 (473)
... .... .. .....+.+++++++++++++...+ +.|
T Consensus 104 ~~~~~~~~--~~--------------------------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l 155 (314)
T 1pjx_A 104 EEIAKKDS--EG--------------------------RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSI 155 (314)
T ss_dssp EECCSBCT--TS--------------------------CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred EEEEeccC--CC--------------------------ccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeE
Confidence 211 1000 00 023457899999999877776554 467
Q ss_pred EEEEcCCCeeeEEeecCCCceeEEEEc----CCC-EEEE-EeCCCcEEEEeCcccCCCcceeeeeeeccCC-ccEEEEEE
Q 012007 260 KVWRISDCKCLESINAHDDAINSVVAG----FDS-LVFT-GSADGTVKVWRRELQGKGTKHCLAQVLLKHE-NAVTALAV 332 (473)
Q Consensus 260 ~vwd~~~~~~~~~~~~~~~~v~~l~~~----~~~-~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~v~~l~~ 332 (473)
..||.. ++.... ..+......++++ +++ .++. ...++.|.+||+...+..........+..+. ..+..+++
T Consensus 156 ~~~~~~-g~~~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~ 233 (314)
T 1pjx_A 156 YCFTTD-GQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF 233 (314)
T ss_dssp EEECTT-SCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE
T ss_pred EEECCC-CCEEEe-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEE
Confidence 777765 544332 2233456788898 887 4544 4567899999975211101111222233333 56788999
Q ss_pred ccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEE-EEeCCCcEEEEecCC
Q 012007 333 NQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVF-SGSADRNICLWRREE 396 (473)
Q Consensus 333 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~-s~~~dg~i~iwd~~~ 396 (473)
+++|+++++...++.|.+||.+++... ..+..+...+.++. ++++.|+ +...++.|..|++..
T Consensus 234 d~~G~l~v~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 234 DEDNNLLVANWGSSHIEVFGPDGGQPK-MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp BTTCCEEEEEETTTEEEEECTTCBSCS-EEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCCEEEEEcCCCEEEEEcCCCCcEe-EEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999998888777889999998754332 23334434455555 5688555 445568899999875
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.6e-10 Score=100.59 Aligned_cols=238 Identities=11% Similarity=0.057 Sum_probs=158.8
Q ss_pred CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 160 NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
....+.+|++.++|++.++...++.|.+||.. ++... .... .....+.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~------------------------------~~~~~~~ 65 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVP------------------------------TPDAKVM 65 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECS------------------------------STTCCEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECC------------------------------CCCCcce
Confidence 34678999999999887777678999999987 44322 1110 1335688
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeE-EeecCCCceeEEEEcCCCEEE-EEeCCCcEEEEeCcccCCCcceeee
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE-SINAHDDAINSVVAGFDSLVF-TGSADGTVKVWRRELQGKGTKHCLA 317 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~-~~~~~~~~v~~l~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~ 317 (473)
.+++.+++.++++...++.|..||.. ++... .+......+.++++.+++.++ +...++.|..||.. +. .. .
T Consensus 66 ~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~---~~--~ 138 (300)
T 2qc5_A 66 CLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT---IY--E 138 (300)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC---EE--E
T ss_pred eEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC---EE--E
Confidence 99999999877776667889999987 55432 222234678899998888444 44457889999875 21 11 1
Q ss_pred eeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecC
Q 012007 318 QVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRRE 395 (473)
Q Consensus 318 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~ 395 (473)
.........+..+++.++++++++...++.|..||... .........+......+. ++|++.++....+.|.+|+..
T Consensus 139 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 217 (300)
T 2qc5_A 139 YDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTG-KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT 217 (300)
T ss_dssp EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC-CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred ccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCCC-cEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC
Confidence 11222456789999999999777777788999999843 222111222233444554 457777766667789999983
Q ss_pred CCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 396 ESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 396 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
. . .....+..+...+.++++.+++. ++++...++.|..|+..
T Consensus 218 g-~--~~~~~~~~~~~~~~~i~~d~~g~-------------l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 218 G-E--ISEYDIPTPNARPHAITAGKNSE-------------IWFTEWGANQIGRITND 259 (300)
T ss_dssp C-C--EEEEECSSTTCCEEEEEECSTTC-------------EEEEETTTTEEEEECTT
T ss_pred C-c--EEEEECCCCCCCceEEEECCCCC-------------EEEeccCCCeEEEECCC
Confidence 2 1 11222334456789999999987 66666667889999873
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.41 E-value=4.9e-10 Score=102.45 Aligned_cols=219 Identities=11% Similarity=0.094 Sum_probs=141.4
Q ss_pred CcccEEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCe
Q 012007 160 NSGLVKAIIISGDSN-KIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAV 238 (473)
Q Consensus 160 h~~~V~~l~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 238 (473)
+.....+..|++++. ++++...++.|..||..++.... . .....+
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~---------------------------------~~~~~~ 56 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-V---------------------------------TMDAPV 56 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-E---------------------------------ECSSCE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-E---------------------------------eCCCce
Confidence 334567889999654 55566668899999998765321 1 144578
Q ss_pred eEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec----CCCceeEEEEcCCCEEEEEeC----------CCcEEEEe
Q 012007 239 SCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA----HDDAINSVVAGFDSLVFTGSA----------DGTVKVWR 304 (473)
Q Consensus 239 ~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~----~~~~v~~l~~~~~~~l~s~~~----------dg~i~vwd 304 (473)
.++++++++++++ +. ++.|.+||..+++....... ....++.+++.+++.++.++. .....+|.
T Consensus 57 ~~i~~~~dG~l~v-~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~ 134 (297)
T 3g4e_A 57 SSVALRQSGGYVA-TI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYS 134 (297)
T ss_dssp EEEEEBTTSSEEE-EE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEE
T ss_pred EEEEECCCCCEEE-EE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEE
Confidence 8999999999554 44 56799999988765433322 124578899999985555442 13345665
Q ss_pred CcccCCCcceeeeeeeccCCccEEEEEEccCCCEEE-EeCCCCcEEEEecC--Ccccc-cc---eeecCcceE--EEEEe
Q 012007 305 RELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVY-CGSSDGLVNFWECE--KHLSH-GG---VLRGHKMAV--LCLAA 375 (473)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~~~dg~i~iwd~~--~~~~~-~~---~~~~~~~~v--~~~~~ 375 (473)
+...+. . ............++|+|+++.|+ +.+.++.|.+||+. ++... .. .+..+.... +++..
T Consensus 135 ~d~~g~--~----~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~ 208 (297)
T 3g4e_A 135 LFPDHH--V----KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA 208 (297)
T ss_dssp ECTTSC--E----EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT
T ss_pred EECCCC--E----EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC
Confidence 542221 1 11222334568899999998665 45667899999873 32211 01 111222233 34455
Q ss_pred cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEe-cCCC
Q 012007 376 AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVE-EDRD 423 (473)
Q Consensus 376 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~~ 423 (473)
+|++.++...++.|.+||..+ .+.+..+..+...+++++|. |++.
T Consensus 209 ~G~lwva~~~~~~v~~~d~~t---G~~~~~i~~p~~~~t~~~f~g~d~~ 254 (297)
T 3g4e_A 209 EGKLWVACYNGGRVIRLDPVT---GKRLQTVKLPVDKTTSCCFGGKNYS 254 (297)
T ss_dssp TSCEEEEEETTTEEEEECTTT---CCEEEEEECSSSBEEEEEEESGGGC
T ss_pred CCCEEEEEcCCCEEEEEcCCC---ceEEEEEECCCCCceEEEEeCCCCC
Confidence 688887777788899999986 35666666666789999998 7766
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.9e-11 Score=122.92 Aligned_cols=202 Identities=13% Similarity=0.042 Sum_probs=132.4
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCC-----CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCc---------
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWD-----KTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGT--------- 299 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~--------- 299 (473)
|...+..++|+|||++|+.+..+ ..|++||+.+++.+... .+...+..++|+|+..|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~ 239 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQAL 239 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTTSEEEEEECCCC--------C
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECCCEEEEEEecCcccccccccC
Confidence 33467889999999999887643 35999999999876532 1222235788999876666665543
Q ss_pred -----EEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC-----cEEEEecCCcc-c-ccceeecCc
Q 012007 300 -----VKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG-----LVNFWECEKHL-S-HGGVLRGHK 367 (473)
Q Consensus 300 -----i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-----~i~iwd~~~~~-~-~~~~~~~~~ 367 (473)
|++|++.... ....++.....+...+..+.|+|||++|+..+.++ .|.+||+.++. . .........
T Consensus 240 ~~~~~v~~~~lgt~~--~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 317 (741)
T 1yr2_A 240 NYNQTVWLHRLGTPQ--SADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK 317 (741)
T ss_dssp CCCCEEEEEETTSCG--GGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS
T ss_pred CCCCEEEEEECCCCc--hhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC
Confidence 8888875322 11122222233344688999999999888776543 89999987652 1 222322333
Q ss_pred ceEEEEEecCCEEEEEeCC----CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeC
Q 012007 368 MAVLCLAAAGNLVFSGSAD----RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSL 443 (473)
Q Consensus 368 ~~v~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~ 443 (473)
.....+.++|+.|+..+.+ +.|.+||+.++. ......+..+...+..++|. ++. ++++...
T Consensus 318 ~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~l~~~~~~-~~~-------------lv~~~~~ 382 (741)
T 1yr2_A 318 AQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRFDTVVPESKDNLESVGIA-GNR-------------LFASYIH 382 (741)
T ss_dssp SCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSS-CEEEEEECCCSSEEEEEEEE-BTE-------------EEEEEEE
T ss_pred ceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCc-cccEEEecCCCCeEEEEEEE-CCE-------------EEEEEEE
Confidence 3344456889988887754 459999987742 12333344555567778887 333 7899999
Q ss_pred CCcEEEEEcC
Q 012007 444 DKSVKVWRVS 453 (473)
Q Consensus 444 Dg~v~iW~i~ 453 (473)
|+..+||.+.
T Consensus 383 dg~~~l~~~~ 392 (741)
T 1yr2_A 383 DAKSQVLAFD 392 (741)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEEEe
Confidence 9998888765
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=9.5e-11 Score=120.30 Aligned_cols=241 Identities=11% Similarity=0.072 Sum_probs=150.2
Q ss_pred CcccEEEEEEeCCCCEEEEEe-----CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeec
Q 012007 160 NSGLVKAIIISGDSNKIFTGH-----QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRH 234 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
|...+..++|||||++||-+. ....|++||+.+++...... +
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~---------------------------------~ 173 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL---------------------------------K 173 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE---------------------------------E
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc---------------------------------C
Confidence 556799999999999888432 23579999999987433211 1
Q ss_pred cCCeeEEEEcCCCCEEEEEeCCCC-------------EEEEEcCCCe----eeEEeec-CCCceeEEEEcCCC-EE-EEE
Q 012007 235 YDAVSCLSLNAEQGLLYSGSWDKT-------------LKVWRISDCK----CLESINA-HDDAINSVVAGFDS-LV-FTG 294 (473)
Q Consensus 235 ~~~v~~l~~~~~~~~l~s~s~dg~-------------v~vwd~~~~~----~~~~~~~-~~~~v~~l~~~~~~-~l-~s~ 294 (473)
......++|+ |++.|+.++.+.. |++|++.+.. ++..... |...+..+.+++++ +| ++.
T Consensus 174 ~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~ 252 (693)
T 3iuj_A 174 DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISA 252 (693)
T ss_dssp EEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEE
T ss_pred CceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEE
Confidence 1113467899 9999998887743 9999997754 3333333 44557788999998 33 333
Q ss_pred eC---CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEE-EEeCCC---CcEEEEecCCccc-ccceeecC
Q 012007 295 SA---DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVV-YCGSSD---GLVNFWECEKHLS-HGGVLRGH 366 (473)
Q Consensus 295 ~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~~~d---g~i~iwd~~~~~~-~~~~~~~~ 366 (473)
.. +..|.++|+..... ....+..+....... +++++..| +....+ +.|..+|+.+... ....+..|
T Consensus 253 ~~~~~~~~i~~~d~~~~~~-----~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 326 (693)
T 3iuj_A 253 ANSTSGNRLYVKDLSQENA-----PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE 326 (693)
T ss_dssp ESSSSCCEEEEEETTSTTC-----CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC
T ss_pred ccCCCCcEEEEEECCCCCC-----ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC
Confidence 32 35899999864321 122333444444444 55555544 444443 5799999886532 11233444
Q ss_pred cceEEEEEecCCEEEEEeCCC---cEEEEecCCCCceeEEEEec-CCCCceeEEEEecCCCCCcccccCCCccEEEEEee
Q 012007 367 KMAVLCLAAAGNLVFSGSADR---NICLWRREESGAHSCLAVLT-GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS 442 (473)
Q Consensus 367 ~~~v~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s 442 (473)
...+..+++++++|+....++ .|++|++... . ...+. ...+.+..+.+++++.. ++++.+
T Consensus 327 ~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~---~-~~~l~~p~~~~~~~~~~~~d~~~------------l~~~~s 390 (693)
T 3iuj_A 327 RQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGK---R-VREVALPGLGSVSGFNGKHDDPA------------LYFGFE 390 (693)
T ss_dssp CSSCEEEEEETTEEEEEEEETTEEEEEEECTTSC---E-EEEECCSSSSEEEECCCCTTCSC------------EEEEEE
T ss_pred CCCEEEEEEECCEEEEEEEECCeeEEEEEECCCC---e-eEEeecCCCceEEeeecCCCCCE------------EEEEec
Confidence 433348889998877766544 6888988752 2 22222 34456777788877763 444433
Q ss_pred C---CCcEEEEEcCCCC
Q 012007 443 L---DKSVKVWRVSEHA 456 (473)
Q Consensus 443 ~---Dg~v~iW~i~~~~ 456 (473)
. -++|..||+..++
T Consensus 391 s~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 391 NYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp CSSSCCEEEEECTTTCC
T ss_pred CCCCCCEEEEEECCCCe
Confidence 2 2789999987654
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.37 E-value=5.1e-10 Score=102.30 Aligned_cols=221 Identities=10% Similarity=0.069 Sum_probs=136.4
Q ss_pred CCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEe
Q 012007 133 GDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVK 212 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 212 (473)
+.++++...++.|..||..............+.+++++++|+++++ . ++.|.+||..+++..........
T Consensus 25 ~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~-------- 94 (297)
T 3g4e_A 25 NSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDND-------- 94 (297)
T ss_dssp TEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTT--------
T ss_pred CEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCC--------
Confidence 5577777778999999976432223334578999999999995554 4 56799999987654322211100
Q ss_pred ecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC---------CCEEEEEcCCCeeeEEeecCCCceeEE
Q 012007 213 SSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD---------KTLKVWRISDCKCLESINAHDDAINSV 283 (473)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d---------g~v~vwd~~~~~~~~~~~~~~~~v~~l 283 (473)
.....+..++++++|+++++...+ ..-.+|.+.....+..+..+....+.+
T Consensus 95 --------------------~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi 154 (297)
T 3g4e_A 95 --------------------KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGL 154 (297)
T ss_dssp --------------------CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEE
T ss_pred --------------------CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccce
Confidence 012346789999999966654321 334566554322222333344556889
Q ss_pred EEcCCC--EEEEEeCCCcEEEEeCcc-cCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccc
Q 012007 284 VAGFDS--LVFTGSADGTVKVWRREL-QGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHG 360 (473)
Q Consensus 284 ~~~~~~--~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 360 (473)
+|++++ ++++.+.++.|.+|++.. .+..........+..+...+..++++++|++.++...++.|..||..++....
T Consensus 155 ~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~ 234 (297)
T 3g4e_A 155 DWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQ 234 (297)
T ss_dssp EECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEE
T ss_pred EEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEE
Confidence 999998 445666788999998741 11111111222233344568899999999888877778889999998654432
Q ss_pred ceeecCcceEEEEEe---cCCEEEEEe
Q 012007 361 GVLRGHKMAVLCLAA---AGNLVFSGS 384 (473)
Q Consensus 361 ~~~~~~~~~v~~~~~---~~~~l~s~~ 384 (473)
.+..+...+.++++ +++.|++++
T Consensus 235 -~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 235 -TVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp -EEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred -EEECCCCCceEEEEeCCCCCEEEEEc
Confidence 33334344555554 445555444
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.36 E-value=9.8e-12 Score=116.34 Aligned_cols=180 Identities=6% Similarity=0.007 Sum_probs=128.1
Q ss_pred cEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEE
Q 012007 163 LVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS 242 (473)
Q Consensus 163 ~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 242 (473)
.++.+++++...++++|+.++ +++|++............ . ........+.. |..|+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~----------------~------~~~~~~~~lp~-V~~l~ 94 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDST----------------P------LTFKWEKEIPD-VIFVC 94 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSC----------------C------CCCSEEEECTT-EEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccc----------------c------ccceEEeeCCC-eeEEE
Confidence 799999999999999999985 666987543210000000 0 00011223666 99999
Q ss_pred EcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeecc
Q 012007 243 LNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLK 322 (473)
Q Consensus 243 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 322 (473)
| ++++|+++ .++.|++||+.+.........|...+.++.+.+.. +++++.||.|.+||+..... . .
T Consensus 95 f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~------~----~ 160 (388)
T 1xip_A 95 F--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKST------K----Q 160 (388)
T ss_dssp E--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCE------E----E
T ss_pred E--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcc------c----c
Confidence 9 89999999 78999999998776666677777888888776554 88899999999999973321 1 1
Q ss_pred CCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccc-ccee------e---cCcceEEEEEec--CCEEEE
Q 012007 323 HENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSH-GGVL------R---GHKMAVLCLAAA--GNLVFS 382 (473)
Q Consensus 323 ~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~------~---~~~~~v~~~~~~--~~~l~s 382 (473)
+...|++++|+|+| ++.|..||.+++|+....... ...+ . +|...|.++.|- +.++++
T Consensus 161 ~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 161 LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 34689999999999 677889999999988764421 1222 2 367888888875 445554
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-09 Score=103.73 Aligned_cols=231 Identities=9% Similarity=0.091 Sum_probs=146.4
Q ss_pred cEEEEEe--cCCEEEEeeCCCcEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCCC--eEEEEeCCCCCeeeEE
Q 012007 125 HIYSLAA--SGDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG--KIRIWKVSRKNASVHK 199 (473)
Q Consensus 125 ~V~~~~~--~g~~l~tg~~dg~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~ 199 (473)
....+++ +|+++++...++.|++||.. ..+..+........ ++|+++++.|+++..++ .|.+|+..........
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~ 210 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRI 210 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEe
Confidence 3455555 47777777778999999976 33333333233334 99999999999988866 7888887655431111
Q ss_pred eeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEE----eec
Q 012007 200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES----INA 275 (473)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~----~~~ 275 (473)
.... ......+.+++++|++..|+.+..++.|+.||..++..... ...
T Consensus 211 g~~~----------------------------~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g 262 (409)
T 3hrp_A 211 GQLG----------------------------STFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSG 262 (409)
T ss_dssp EECC----------------------------TTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCS
T ss_pred eecc----------------------------chhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccC
Confidence 0000 00234567899999666677777888999999987653322 222
Q ss_pred CCCce--eEEEEcCC-C-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccC---------------CccEEEEEEccCC
Q 012007 276 HDDAI--NSVVAGFD-S-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKH---------------ENAVTALAVNQES 336 (473)
Q Consensus 276 ~~~~v--~~l~~~~~-~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---------------~~~v~~l~~~~~~ 336 (473)
+...- ..++++|+ + ++++-..++.|+.|+.... . ..+.++ -.....++++++|
T Consensus 263 ~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-----~---~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG 334 (409)
T 3hrp_A 263 SLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-----C---EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG 334 (409)
T ss_dssp CCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-----E---EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC
T ss_pred CCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-----E---EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC
Confidence 22222 38999994 6 4555566788999987521 1 111111 2457899999999
Q ss_pred CEEEEeC-CCCcEEEEecCCcccccceeecC---------------cceE--EEEEecCCEEEEEeCCCcEEEEec
Q 012007 337 AVVYCGS-SDGLVNFWECEKHLSHGGVLRGH---------------KMAV--LCLAAAGNLVFSGSADRNICLWRR 394 (473)
Q Consensus 337 ~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~---------------~~~v--~~~~~~~~~l~s~~~dg~i~iwd~ 394 (473)
+++++-. .++.|+.||+.++... .+.++ -... .++++++.++++-..++.|+.+++
T Consensus 335 ~lyvad~~~~~~I~~~~~~~G~v~--~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 335 NFYIVDGFKGYCLRKLDILDGYVS--TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CEEEEETTTTCEEEEEETTTTEEE--EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CEEEEeCCCCCEEEEEECCCCEEE--EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 9888877 8899999996554321 22222 1122 445556777777777778887765
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.31 E-value=7.5e-10 Score=101.61 Aligned_cols=222 Identities=7% Similarity=0.071 Sum_probs=139.0
Q ss_pred EEecCC-EEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecccccc
Q 012007 129 LAASGD-LLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTF 207 (473)
Q Consensus 129 ~~~~g~-~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 207 (473)
+.++|+ +++++..++.|..|+.......+..+...+..++++++|+++++...++.|.+|+.+ ++......... .
T Consensus 52 ~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~--~- 127 (305)
T 3dr2_A 52 WWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYA--G- 127 (305)
T ss_dssp EEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEET--T-
T ss_pred EeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccC--C-
Confidence 445677 677777889999998765566666677889999999999866665566889999986 43221111000 0
Q ss_pred ceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEE----EeC-------------CCCEEEEEcCCCeee
Q 012007 208 KDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYS----GSW-------------DKTLKVWRISDCKCL 270 (473)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s----~s~-------------dg~v~vwd~~~~~~~ 270 (473)
.....+..++++++|++.++ |.. .+.|..||..+++..
T Consensus 128 -------------------------~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~ 182 (305)
T 3dr2_A 128 -------------------------KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ 182 (305)
T ss_dssp -------------------------EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE
T ss_pred -------------------------CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE
Confidence 02245678999999998876 332 245777777666544
Q ss_pred EEeecCCCceeEEEEcCCC-EEEEEeCC------CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC
Q 012007 271 ESINAHDDAINSVVAGFDS-LVFTGSAD------GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS 343 (473)
Q Consensus 271 ~~~~~~~~~v~~l~~~~~~-~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 343 (473)
... .....+.+++++++ .|+.+... +.|.+|++..... .... ............++++++|++ +++.
T Consensus 183 ~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l-~~~~--~~~~~~~~~pdgi~~d~~G~l-wv~~ 256 (305)
T 3dr2_A 183 RMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL-HDRR--HFASVPDGLPDGFCVDRGGWL-WSSS 256 (305)
T ss_dssp EEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE-EEEE--EEECCSSSCCCSEEECTTSCE-EECC
T ss_pred EEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc-cCCe--EEEECCCCCCCeEEECCCCCE-EEec
Confidence 333 34456889999998 56666554 7899999863220 0011 111112334567899999994 4555
Q ss_pred CCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCC
Q 012007 344 SDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADR 387 (473)
Q Consensus 344 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg 387 (473)
.+ .|.+|+.... ..............++.++++.|+.++.++
T Consensus 257 ~~-gv~~~~~~g~-~~~~~~~~~~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 257 GT-GVCVFDSDGQ-LLGHIPTPGTASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp SS-EEEEECTTSC-EEEEEECSSCCCEEEECTTSCEEEEEETTE
T ss_pred CC-cEEEECCCCC-EEEEEECCCceeEEEEeCCCCEEEEEcCCe
Confidence 44 4999998543 222222222223345556788888887664
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.30 E-value=6.4e-09 Score=97.99 Aligned_cols=245 Identities=9% Similarity=-0.005 Sum_probs=153.2
Q ss_pred eeeeeeecccEEEEEecCCEEEEee----------CCCcEEEeeCCc--cccccccC-------cccEEEEEEeCCCCEE
Q 012007 116 IGSIVRKEGHIYSLAASGDLLYTGS----------DSKNIRVWKNLK--EFSGFKSN-------SGLVKAIIISGDSNKI 176 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~g~~l~tg~----------~dg~i~vwd~~~--~~~~~~~h-------~~~V~~l~~s~~~~~l 176 (473)
+..+....+.=..+++||++|+++. .++.|.+||... .+..+.-. ...-..++|+|||++|
T Consensus 60 ~~~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l 139 (373)
T 2mad_H 60 LGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADL 139 (373)
T ss_pred EEEecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEE
Confidence 3444333334557888999988886 367899999652 22222111 1234589999999999
Q ss_pred EEEeC--CCeEEEEeCCCCCeeeE-EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCC-CEEEE
Q 012007 177 FTGHQ--DGKIRIWKVSRKNASVH-KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQ-GLLYS 252 (473)
Q Consensus 177 ~s~~~--dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s 252 (473)
+.+.. ++.|.++| .+++.... ... . .|+.+.+++ ..+++
T Consensus 140 ~v~n~~~~~~v~viD-~t~~~~~~~i~~---------------------------------~---~~~~~~~~~~~~~~~ 182 (373)
T 2mad_H 140 LFFQFAAGPAVGLVV-QGGSSDDQLLSS---------------------------------P---TCYHIHPGAPSTFYL 182 (373)
T ss_pred EEEecCCCCeEEEEE-CCCCEEeEEcCC---------------------------------C---ceEEEEeCCCceEEE
Confidence 98874 47899999 88765433 211 1 123444544 45666
Q ss_pred EeCCCCEEEEEcCCCeeeEEee-----cCCCce-eEEEEcCC-CEEEEEeCCCcEEEEeCcccCCCcceeeeeeec----
Q 012007 253 GSWDKTLKVWRISDCKCLESIN-----AHDDAI-NSVVAGFD-SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLL---- 321 (473)
Q Consensus 253 ~s~dg~v~vwd~~~~~~~~~~~-----~~~~~v-~~l~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~---- 321 (473)
.+.||.+.++|. +++.+.... ....++ ....+.++ +.++..+.++.+.+.|+..... .....+.
T Consensus 183 ~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~----~v~~~~~~~~~ 257 (373)
T 2mad_H 183 LCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA----TNKAPIDALSG 257 (373)
T ss_pred EcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc----eEeeeeeecCC
Confidence 778999999999 877664322 111121 12233333 3333334678899999863211 0111110
Q ss_pred ------cCCccEEEEEEccCCCEEEEeCC----------CCcEEEEecCCcccccceeecCcceEEEEEecCC-EEEEEe
Q 012007 322 ------KHENAVTALAVNQESAVVYCGSS----------DGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGN-LVFSGS 384 (473)
Q Consensus 322 ------~~~~~v~~l~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~ 384 (473)
........++++|+++.+++... ++.|.++|..+.+....+..++...-..+++||+ +++++.
T Consensus 258 ~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~ 337 (373)
T 2mad_H 258 GRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALS 337 (373)
T ss_pred cccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEc
Confidence 01223445789999988887643 3579999999876665555556566778889999 777777
Q ss_pred -CCCcEEEEecCCCCceeEEEE
Q 012007 385 -ADRNICLWRREESGAHSCLAV 405 (473)
Q Consensus 385 -~dg~i~iwd~~~~~~~~~~~~ 405 (473)
.++.|.+||..+ .+.+..
T Consensus 338 ~~~~~V~ViD~~t---~~vv~~ 356 (373)
T 2mad_H 338 AGTEVLHIYDAGA---GDQDQS 356 (373)
T ss_pred CCCCeEEEEECCC---CCEEee
Confidence 589999999998 445544
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.4e-10 Score=102.06 Aligned_cols=214 Identities=9% Similarity=0.121 Sum_probs=131.7
Q ss_pred CcccEEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCe
Q 012007 160 NSGLVKAIIISGDSN-KIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAV 238 (473)
Q Consensus 160 h~~~V~~l~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 238 (473)
.........|+++++ ++++...++.|..|+.. +.... .. .+...+
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~~-~~--------------------------------~~~~~~ 88 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVDV-LL--------------------------------DATAFT 88 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEEE-EE--------------------------------ESCSCE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEEE-Ee--------------------------------CCCCcc
Confidence 444567899999998 56666678999999874 33211 11 144568
Q ss_pred eEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec----CCCceeEEEEcCCCEEEE-----EeC-------------
Q 012007 239 SCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA----HDDAINSVVAGFDSLVFT-----GSA------------- 296 (473)
Q Consensus 239 ~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~----~~~~v~~l~~~~~~~l~s-----~~~------------- 296 (473)
..++++++|+++++...++.|.+|+.. ++....... ....++.+++.+++.++. |..
T Consensus 89 ~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~ 167 (305)
T 3dr2_A 89 NGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELA 167 (305)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSS
T ss_pred ceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccC
Confidence 899999999866665556789999975 543222111 123467899999985554 332
Q ss_pred CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC------CcEEEEecCCcccc-cceee-cCcc
Q 012007 297 DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD------GLVNFWECEKHLSH-GGVLR-GHKM 368 (473)
Q Consensus 297 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~-~~~~~-~~~~ 368 (473)
.+.|..||...+. . ... . .......++|+|+++.|+.+... +.|.+|++...... ...+. ....
T Consensus 168 ~~~v~~~d~~~g~---~---~~~-~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~ 239 (305)
T 3dr2_A 168 HHSVYRLPPDGSP---L---QRM-A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDG 239 (305)
T ss_dssp CEEEEEECSSSCC---C---EEE-E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSS
T ss_pred CCeEEEEcCCCCc---E---EEE-e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCC
Confidence 2456666654221 1 111 1 23456789999999987777654 68999998643210 00110 0011
Q ss_pred --eEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 369 --AVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 369 --~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
.-+++..+|++ .++..+ .|.+|+... +.+..+..+. .+.+++|.+++.
T Consensus 240 ~pdgi~~d~~G~l-wv~~~~-gv~~~~~~g----~~~~~~~~~~-~~~~~~f~~d~~ 289 (305)
T 3dr2_A 240 LPDGFCVDRGGWL-WSSSGT-GVCVFDSDG----QLLGHIPTPG-TASNCTFDQAQQ 289 (305)
T ss_dssp CCCSEEECTTSCE-EECCSS-EEEEECTTS----CEEEEEECSS-CCCEEEECTTSC
T ss_pred CCCeEEECCCCCE-EEecCC-cEEEECCCC----CEEEEEECCC-ceeEEEEeCCCC
Confidence 12455667884 444445 499999854 3444554444 589999998876
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.29 E-value=4.8e-10 Score=104.51 Aligned_cols=269 Identities=9% Similarity=0.017 Sum_probs=164.6
Q ss_pred cceeeeeeecccEEEEEecCCEEEEee----------CCCcEEEeeCCc--cccccccC-------cccEEEEEEeCCCC
Q 012007 114 GLIGSIVRKEGHIYSLAASGDLLYTGS----------DSKNIRVWKNLK--EFSGFKSN-------SGLVKAIIISGDSN 174 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~g~~l~tg~----------~dg~i~vwd~~~--~~~~~~~h-------~~~V~~l~~s~~~~ 174 (473)
..+.++.....+-..+++||++|+++. .++.|.+||... .+..+.-. ...-..++|+|||+
T Consensus 70 ~v~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk 149 (386)
T 3sjl_D 70 RVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK 149 (386)
T ss_dssp EEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS
T ss_pred eEEEEEECCCCCcEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCC
Confidence 344444433333378888999887775 367899999753 23333211 12456789999999
Q ss_pred EEEEEeC--CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEE
Q 012007 175 KIFTGHQ--DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYS 252 (473)
Q Consensus 175 ~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s 252 (473)
+|+.+.. ++.|.++|+.+.+......+.. + ...+......+++
T Consensus 150 ~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----------------------------------~-~~~~P~g~~~~~~ 194 (386)
T 3sjl_D 150 TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----------------------------------C-YHIFPTAPDTFFM 194 (386)
T ss_dssp EEEEEECSSSCEEEEEETTTTEEEEEEECCS----------------------------------E-EEEEEEETTEEEE
T ss_pred EEEEEEcCCCCeEEEEECCCCcEEEEEECCC----------------------------------c-ceeecCCCceeEE
Confidence 9998864 6899999999987665443210 0 1122224456667
Q ss_pred EeCCCCEEEEEcCC-CeeeEEeecCC----Ccee-EEEE-cCCCEEEEEeCCCcEEEEeCcccCCC--cceeeeee----
Q 012007 253 GSWDKTLKVWRISD-CKCLESINAHD----DAIN-SVVA-GFDSLVFTGSADGTVKVWRRELQGKG--TKHCLAQV---- 319 (473)
Q Consensus 253 ~s~dg~v~vwd~~~-~~~~~~~~~~~----~~v~-~l~~-~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~---- 319 (473)
.+.||.+.+.++.+ ++.......+. ..+. ...| .+++.++..+.+|.|.+.|+...... ....+...
T Consensus 195 ~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~ 274 (386)
T 3sjl_D 195 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA 274 (386)
T ss_dssp EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceecccccccc
Confidence 77788888888765 45432211111 1221 1244 46776555777899999998633210 00000000
Q ss_pred eccCCccEEEEEEccCCCEEEEeCC----------CCcEEEEecCCcccccceeecCcceEEEEEecCC-EEEEE-eCCC
Q 012007 320 LLKHENAVTALAVNQESAVVYCGSS----------DGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGN-LVFSG-SADR 387 (473)
Q Consensus 320 ~~~~~~~v~~l~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~-~~dg 387 (473)
..-.......++++++++.++.... .+.|.++|+.+.+....+..++...-+.++++++ +|++. ..++
T Consensus 275 ~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~ 354 (386)
T 3sjl_D 275 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDK 354 (386)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTT
T ss_pred ccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCC
Confidence 0001123335777999988887642 2579999999987777777777666788889986 66665 4589
Q ss_pred cEEEEecCCCCceeEEEEecCCCCceeEEEEecC
Q 012007 388 NICLWRREESGAHSCLAVLTGHTGPVKCLAVEED 421 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 421 (473)
.|.++|..+ .+.+..+..- +.-+.|.+++|
T Consensus 355 ~VsViD~~t---~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 355 TLYIHDAES---GEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp EEEEEETTT---CCEEEEECCC-CSSCCEEEECC
T ss_pred eEEEEECCC---CcEEEEecCC-CCCceeEECCc
Confidence 999999998 4556655432 22355566655
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=5.5e-09 Score=96.78 Aligned_cols=213 Identities=10% Similarity=0.048 Sum_probs=133.1
Q ss_pred EEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEE
Q 012007 164 VKAIIISGDSN-KIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS 242 (473)
Q Consensus 164 V~~l~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 242 (473)
..+.+|++++. ++++...++.|..||..+++... . .....+.+++
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~---------------------------------~~~~~v~~i~ 96 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-H---------------------------------ALPFMGSALA 96 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-E---------------------------------ECSSCEEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-E---------------------------------ECCCcceEEE
Confidence 46778999754 55566668899999998764321 1 1335688999
Q ss_pred EcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec----CCCceeEEEEcCCCEEEEEeCC-----CcEEEEeCcccCCCcc
Q 012007 243 LNAEQGLLYSGSWDKTLKVWRISDCKCLESINA----HDDAINSVVAGFDSLVFTGSAD-----GTVKVWRRELQGKGTK 313 (473)
Q Consensus 243 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~----~~~~v~~l~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~ 313 (473)
|+++++++++. .+ .|.+||..+++....... ....++.+.+.+++.++.++.+ +...||.+. .+ ..
T Consensus 97 ~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g--~~ 171 (326)
T 2ghs_A 97 KISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KG--KV 171 (326)
T ss_dssp EEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TT--EE
T ss_pred EeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CC--cE
Confidence 99998876654 44 499999988775433221 1235889999999855544432 234444443 11 11
Q ss_pred eeeeeeeccCCccEEEEEEccCCCEEEE-eCCCCcEEEEecC--Cc-ccc-ccee---ecCcceEEEE--EecCCEEEEE
Q 012007 314 HCLAQVLLKHENAVTALAVNQESAVVYC-GSSDGLVNFWECE--KH-LSH-GGVL---RGHKMAVLCL--AAAGNLVFSG 383 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~dg~i~iwd~~--~~-~~~-~~~~---~~~~~~v~~~--~~~~~~l~s~ 383 (473)
. .+.........++|+|+++.|+. .+.++.|.+||+. ++ ... ...+ .........+ ..+|++.++.
T Consensus 172 ~----~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~ 247 (326)
T 2ghs_A 172 T----KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNAR 247 (326)
T ss_dssp E----EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEE
T ss_pred E----EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEE
Confidence 1 11122335678999999987654 4567899999985 43 211 1111 1122233334 4458777776
Q ss_pred eCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEe-cCCC
Q 012007 384 SADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVE-EDRD 423 (473)
Q Consensus 384 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~~ 423 (473)
..++.|.+|+... +.+..+..+...+++++|. +++.
T Consensus 248 ~~~~~v~~~d~~g----~~~~~i~~~~~~~~~~af~g~d~~ 284 (326)
T 2ghs_A 248 WGEGAVDRYDTDG----NHIARYEVPGKQTTCPAFIGPDAS 284 (326)
T ss_dssp ETTTEEEEECTTC----CEEEEEECSCSBEEEEEEESTTSC
T ss_pred eCCCEEEEECCCC----CEEEEEECCCCCcEEEEEecCCCC
Confidence 6678899999843 3455555566679999998 7766
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=4.4e-09 Score=97.45 Aligned_cols=222 Identities=10% Similarity=0.007 Sum_probs=134.1
Q ss_pred EEEec-CCEEEEeeCCCcEEEeeCCcc-ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecccc
Q 012007 128 SLAAS-GDLLYTGSDSKNIRVWKNLKE-FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLP 205 (473)
Q Consensus 128 ~~~~~-g~~l~tg~~dg~i~vwd~~~~-~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 205 (473)
.+.++ +.++++...++.|.+||.... ...+ .....+.+++|+++|+++++. .+ .|.+||..+++..........
T Consensus 55 ~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~- 130 (326)
T 2ghs_A 55 TFDPASGTAWWFNILERELHELHLASGRKTVH-ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESD- 130 (326)
T ss_dssp EEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTT-
T ss_pred eEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-ECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCC-
Confidence 34555 456777777889999987533 2222 235679999999999877654 44 499999887764322111000
Q ss_pred ccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC------CCCEEEEEcCCCeeeEEeecCCCc
Q 012007 206 TFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW------DKTLKVWRISDCKCLESINAHDDA 279 (473)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~------dg~v~vwd~~~~~~~~~~~~~~~~ 279 (473)
.....+.+++++++|+++++... .+.|..++ +++... +..+...
T Consensus 131 ---------------------------~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~ 180 (326)
T 2ghs_A 131 ---------------------------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISI 180 (326)
T ss_dssp ---------------------------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESS
T ss_pred ---------------------------CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcc
Confidence 01235788999999987665432 23455555 555433 3233345
Q ss_pred eeEEEEcCCC-EE-EEEeCCCcEEEEeCc--ccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCC
Q 012007 280 INSVVAGFDS-LV-FTGSADGTVKVWRRE--LQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEK 355 (473)
Q Consensus 280 v~~l~~~~~~-~l-~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~ 355 (473)
...++|++++ .+ ++.+.++.|.+||+. .+-..........+......+..++++++|.+.++...++.|.+||...
T Consensus 181 ~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g 260 (326)
T 2ghs_A 181 PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG 260 (326)
T ss_dssp EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC
T ss_pred cCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCC
Confidence 6789999998 44 455567899999975 2201111111122223345678899999998877776678899999843
Q ss_pred cccccceeecCcceEEEEEe---cCCEEEEEeC
Q 012007 356 HLSHGGVLRGHKMAVLCLAA---AGNLVFSGSA 385 (473)
Q Consensus 356 ~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~ 385 (473)
... ..+..+...+.++++ +++.|++++.
T Consensus 261 -~~~-~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 261 -NHI-ARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp -CEE-EEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred -CEE-EEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 222 233334444555554 4555555443
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=4.8e-10 Score=104.67 Aligned_cols=260 Identities=7% Similarity=-0.002 Sum_probs=160.5
Q ss_pred cEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEe----------CCCeEEEEeCCCCCeeeEEeeccccccceeE
Q 012007 144 NIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGH----------QDGKIRIWKVSRKNASVHKRVGSLPTFKDYV 211 (473)
Q Consensus 144 ~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 211 (473)
.|.+.|.. +.+..+.....+ .+.++||+++|+++. .++.|.+||..+.+......+.....+
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~---- 120 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF---- 120 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC----
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccc----
Confidence 77788854 444455444445 799999999999886 368899999999987766554310000
Q ss_pred eecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC--CCCEEE--EEcCCCeeeEEeecCCCceeEEEEcC
Q 012007 212 KSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW--DKTLKV--WRISDCKCLESINAHDDAINSVVAGF 287 (473)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~--dg~v~v--wd~~~~~~~~~~~~~~~~v~~l~~~~ 287 (473)
........+.++|||++|+++.. +..|.+ +|+.+ +..+..... + .+....
T Consensus 121 ---------------------~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~-~-~~~p~g 174 (368)
T 1mda_H 121 ---------------------SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC-F-HIHPGA 174 (368)
T ss_dssp ---------------------CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC-C-CCEEEE
T ss_pred ---------------------ccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc-e-EEccCC
Confidence 00123456899999999999975 356888 88877 445542211 1 121122
Q ss_pred CCEEEEEeCCCcEEEEeCcc----cCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccc-ccce
Q 012007 288 DSLVFTGSADGTVKVWRREL----QGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLS-HGGV 362 (473)
Q Consensus 288 ~~~l~s~~~dg~i~vwd~~~----~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~ 362 (473)
...+++.+.||.+.+.|+.. .++...... ....-...+. . .+++..++..+. +.|.+.|...... ....
T Consensus 175 ~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t-~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~ 248 (368)
T 1mda_H 175 AATHYLGSCPASLAASDLAAAPAAAGIVGAQCT-GAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAA 248 (368)
T ss_dssp TTEEECCCCTTSCEEEECCSSCCCCEECCCCSC-TTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECC
T ss_pred CeEEEEEcCCCCEEEEECccccccCCeEEEEee-eeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEE
Confidence 23666777899988888864 111000000 0111122333 3 555555555555 8999999864211 1000
Q ss_pred ------------eecCcceEEEEEecCCEEEEEeC---------CCcEEEEecCCCCceeEEEEecCCCCceeEEEEecC
Q 012007 363 ------------LRGHKMAVLCLAAAGNLVFSGSA---------DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEED 421 (473)
Q Consensus 363 ------------~~~~~~~v~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 421 (473)
..........++++++.++.+.. ++.+.++|+.+ .+.+..+.... ...+|+|+++
T Consensus 249 ~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t---~~vv~~i~vg~-~p~gi~~s~D 324 (368)
T 1mda_H 249 IDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV---GQTSGPISNGH-DSDAIIAAQD 324 (368)
T ss_dssp CCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS---CCEEECCEEEE-EECEEEECCS
T ss_pred EEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCC---CeEEEEEECCC-CcceEEECCC
Confidence 11112222578999888886543 23566999998 45566554332 5899999999
Q ss_pred CCCCcccccCCCccEEEEEee-CCCcEEEEEcCCCCC
Q 012007 422 RDHDHEYHQKGDQRWTVYSGS-LDKSVKVWRVSEHAP 457 (473)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~s~s-~Dg~v~iW~i~~~~~ 457 (473)
++. ++++.. .++.|.++|+.+.+.
T Consensus 325 g~~------------l~va~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 325 GAS------------DNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp SSC------------EEEEEETTTTEEEEEESSSCEE
T ss_pred CCE------------EEEEccCCCCeEEEEECCCCcE
Confidence 874 677777 699999999988764
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.24 E-value=8.2e-09 Score=97.67 Aligned_cols=288 Identities=9% Similarity=0.069 Sum_probs=160.1
Q ss_pred cCCEEEEeeCCCcEEEeeCC--ccccccccC---------cccE-EEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEE
Q 012007 132 SGDLLYTGSDSKNIRVWKNL--KEFSGFKSN---------SGLV-KAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHK 199 (473)
Q Consensus 132 ~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h---------~~~V-~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 199 (473)
.+..|++++.++.|..+|.. +.+-.+... ...+ ..+.. ++..|+.++.++.|..+|..+++.....
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQT 129 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence 46677777777888888754 222122111 1223 22333 3458888899999999999998876655
Q ss_pred eeccccccc------eeEeecCCCcceEEEe--ecceeeEeeccCCe------eEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 012007 200 RVGSLPTFK------DYVKSSVNPKNYVEVR--RNRSVLKIRHYDAV------SCLSLNAEQGLLYSGSWDKTLKVWRIS 265 (473)
Q Consensus 200 ~~~~~~~~~------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v------~~l~~~~~~~~l~s~s~dg~v~vwd~~ 265 (473)
......... .++....+ ..+..+. .............+ ..... .+..++.+..++.|..+|..
T Consensus 130 ~~~~~~~~~p~~~~~~v~v~~~~-g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~ 206 (376)
T 3q7m_A 130 KVAGEALSRPVVSDGLVLIHTSN-GQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLME 206 (376)
T ss_dssp ECSSCCCSCCEEETTEEEEECTT-SEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEETT
T ss_pred eCCCceEcCCEEECCEEEEEcCC-CeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECC
Confidence 543211110 11111111 1111111 11111111111111 11112 24578888889999999999
Q ss_pred CCeeeEEeecCCCc----------eeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC
Q 012007 266 DCKCLESINAHDDA----------INSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE 335 (473)
Q Consensus 266 ~~~~~~~~~~~~~~----------v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 335 (473)
+++.+......... +.......++.++.++.++.+..+|.+.+.. . -... ......+.. +
T Consensus 207 tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~-----~-w~~~--~~~~~~~~~--~ 276 (376)
T 3q7m_A 207 QGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI-----M-WKRE--LGSVNDFIV--D 276 (376)
T ss_dssp TCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE-----E-EEEC--CCCEEEEEE--E
T ss_pred CCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE-----E-eecc--CCCCCCceE--E
Confidence 99988776532110 1111111256888888999999999875431 1 1111 122334444 3
Q ss_pred CCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeE
Q 012007 336 SAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKC 415 (473)
Q Consensus 336 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~ 415 (473)
+..|++++.++.|..+|..++...-................+..|+.++.+|.|.++|..++ +.+.........+..
T Consensus 277 ~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG---~~~~~~~~~~~~~~~ 353 (376)
T 3q7m_A 277 GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDG---RFVAQQKVDSSGFQT 353 (376)
T ss_dssp TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTC---CEEEEEECCTTCBCS
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCC---cEEEEEecCCCccee
Confidence 56777888899999999987654322211111122223335788999999999999999884 444444432233322
Q ss_pred EEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 416 LAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 416 l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
.....++ .|+.++.||.|..|+
T Consensus 354 ~~~~~~~--------------~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 354 EPVAADG--------------KLLIQAKDGTVYSIT 375 (376)
T ss_dssp CCEEETT--------------EEEEEBTTSCEEEEE
T ss_pred CCEEECC--------------EEEEEeCCCEEEEEe
Confidence 1112233 588888999999987
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.1e-09 Score=98.39 Aligned_cols=263 Identities=11% Similarity=0.027 Sum_probs=156.2
Q ss_pred ccEEEEEe--cCCEEEEee--CCCcEEEeeC-Cccccc-------cccCcccEEEEEEeCCCCEEEEEeC-----CCeEE
Q 012007 124 GHIYSLAA--SGDLLYTGS--DSKNIRVWKN-LKEFSG-------FKSNSGLVKAIIISGDSNKIFTGHQ-----DGKIR 186 (473)
Q Consensus 124 ~~V~~~~~--~g~~l~tg~--~dg~i~vwd~-~~~~~~-------~~~h~~~V~~l~~s~~~~~l~s~~~-----dg~i~ 186 (473)
.....++. +|+++++.. .++.++||.+ ...+.. ...|-..+..|+++++++++++-.. ++.|.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 45556654 578887753 2343455543 222221 1235568999999999876555433 57899
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe----CCCCEEEE
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS----WDKTLKVW 262 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s----~dg~v~vw 262 (473)
+||+.+++............ .+...+..+++++++..++.+. .++.|.+|
T Consensus 97 ~~d~~tg~~~~~~~~~~~~~--------------------------~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~ 150 (343)
T 2qe8_A 97 AWDTLNNQLSRVIYLPPPIT--------------------------LSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRV 150 (343)
T ss_dssp EEETTTTEEEEEEECCTTTS--------------------------CTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEE
T ss_pred EEECCCCeEEEEEECChhhc--------------------------ccccccceEEEecCCCEEEEEcCccCCCCeEEEE
Confidence 99998877544333211000 1344568899998655555543 57899999
Q ss_pred EcCCCeeeEEeecCCCcee-EEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEE
Q 012007 263 RISDCKCLESINAHDDAIN-SVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVY 340 (473)
Q Consensus 263 d~~~~~~~~~~~~~~~~v~-~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 340 (473)
|+.+++..+.+..|..... ...+..++ .+.+.+.++.++.|. ..+..|+|+|+++.|+
T Consensus 151 d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------------~~~~gia~s~dg~~ly 210 (343)
T 2qe8_A 151 DLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------------LGVNGIVLDAENEWLY 210 (343)
T ss_dssp ETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------------CCEEEEEECTTSCEEE
T ss_pred ECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee--------------------cccceeEeccCCCEEE
Confidence 9998887776654422111 02222344 444556667665553 2357899999999888
Q ss_pred EeCCCC-cEEEEecCC---cc----c-ccc-eeecCcc--eEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecC
Q 012007 341 CGSSDG-LVNFWECEK---HL----S-HGG-VLRGHKM--AVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTG 408 (473)
Q Consensus 341 ~~~~dg-~i~iwd~~~---~~----~-~~~-~~~~~~~--~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 408 (473)
.+..++ .|..++... .. . ... ...++.. .-++++.+|+++++...++.|.+||..++. ...+... .
T Consensus 211 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~-~~~~~~~-~ 288 (343)
T 2qe8_A 211 LSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA-YKLLVTD-E 288 (343)
T ss_dssp EEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE-EEEEEEC-G
T ss_pred EEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC-EEEEEEC-C
Confidence 877665 455554321 00 0 000 1112211 235677789999999899999999984422 2222221 1
Q ss_pred CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcE
Q 012007 409 HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSV 447 (473)
Q Consensus 409 h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v 447 (473)
+...+.+++|.+++. ++++.+..+.+
T Consensus 289 ~~~~p~~va~~~~g~-------------l~v~~~~~~~~ 314 (343)
T 2qe8_A 289 KLSWTDSFNFGSDGY-------------LYFDCNQLHHS 314 (343)
T ss_dssp GGSCEEEEEECTTSC-------------EEEEECCGGGS
T ss_pred ceecCCeeEECCCCc-------------EEEEeCccccc
Confidence 245689999999876 66666644444
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.13 E-value=9.4e-09 Score=95.16 Aligned_cols=263 Identities=14% Similarity=0.110 Sum_probs=159.7
Q ss_pred cEEEEEec-CCEEEEeeCCCcEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeec
Q 012007 125 HIYSLAAS-GDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 125 ~V~~~~~~-g~~l~tg~~dg~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 202 (473)
.+.++..+ +..|+.++.+ |..+|.. +.+..+...........+. +..|+.++.++.|..+|.. ++.......
T Consensus 61 ~~~~~~~~~~g~l~v~t~~--l~~~d~~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~- 134 (330)
T 3hxj_A 61 IECRPSIGKDGTIYFGSDK--VYAINPDGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKT- 134 (330)
T ss_dssp EEECCEETTTTEECCSSCE--EEEECCCGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEEC-
T ss_pred cccceEEecCCcEEEecCc--EEEECCCCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcC-
Confidence 34556655 5566777665 8888753 2222333333333334444 4477888889999999987 554332221
Q ss_pred cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeE
Q 012007 203 SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINS 282 (473)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~ 282 (473)
....+.++...+++. |+.++.++.|..+|.. ++.+..+......+.+
T Consensus 135 -------------------------------~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~ 181 (330)
T 3hxj_A 135 -------------------------------KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSA 181 (330)
T ss_dssp -------------------------------SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSC
T ss_pred -------------------------------CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceee
Confidence 223345556666665 6667888999999998 8887777766667778
Q ss_pred EEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccce
Q 012007 283 VVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV 362 (473)
Q Consensus 283 l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 362 (473)
+....++.++.++ +.|..+| ..+. ...........+.++...+++.+. .++.++.|..+|... .... .
T Consensus 182 ~~~d~~g~l~v~t--~~l~~~d-~~g~------~~~~~~~~~~~~~~~~~~~~g~l~-v~t~~~gl~~~~~~g-~~~~-~ 249 (330)
T 3hxj_A 182 ASIGKDGTIYFGS--DKVYAIN-PDGT------EKWNFYAGYWTVTRPAISEDGTIY-VTSLDGHLYAINPDG-TEKW-R 249 (330)
T ss_dssp CEECTTCCEEEES--SSEEEEC-TTSC------EEEEECCSSCCCSCCEECTTSCEE-EEETTTEEEEECTTS-CEEE-E
T ss_pred eEEcCCCEEEEEe--CEEEEEC-CCCc------EEEEEccCCcceeceEECCCCeEE-EEcCCCeEEEECCCC-CEeE-E
Confidence 8887778777777 8899998 3221 111222234557788888887644 566677888887543 2221 1
Q ss_pred eecCcceEEEEEec-CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEe
Q 012007 363 LRGHKMAVLCLAAA-GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG 441 (473)
Q Consensus 363 ~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~ 441 (473)
..........+..+ +..|+.++.+|.|..+|. + .+.+..+......+.++...+++. |..+
T Consensus 250 ~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~---g~~~~~~~~~~~~~~~~~~d~~g~--------------l~~g 311 (330)
T 3hxj_A 250 FKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-D---GTEKWNFETGSWIIATPVIDENGT--------------IYFG 311 (330)
T ss_dssp EECSSCCCSCCEECTTSCEEEECTTCEEEEECT-T---SCEEEEEECSSCCCSCCEECTTCC--------------EEEE
T ss_pred eeCCCCccccceEcCCCeEEEecCCCCEEEECC-C---CcEEEEEEcCCccccceEEcCCCE--------------EEEE
Confidence 12111111222333 556778888889999986 3 233344444455677788777775 6778
Q ss_pred eCCCcEEEEEcCCCC
Q 012007 442 SLDKSVKVWRVSEHA 456 (473)
Q Consensus 442 s~Dg~v~iW~i~~~~ 456 (473)
+.+|.+++......+
T Consensus 312 t~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 312 TRNGKFYALFNLEHH 326 (330)
T ss_dssp CTTSCEEEEEC----
T ss_pred cCCCeEEEEeccccc
Confidence 899999998876544
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-08 Score=103.36 Aligned_cols=281 Identities=14% Similarity=0.128 Sum_probs=157.9
Q ss_pred ecCCEEEEeeCCCcEEEeeCC--cccccccc--Cc---ccEEE-EEEeCCCCEEEEEe------CCCeEEEEeCCCCCee
Q 012007 131 ASGDLLYTGSDSKNIRVWKNL--KEFSGFKS--NS---GLVKA-IIISGDSNKIFTGH------QDGKIRIWKVSRKNAS 196 (473)
Q Consensus 131 ~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~--h~---~~V~~-l~~s~~~~~l~s~~------~dg~i~vwd~~~~~~~ 196 (473)
.++..|++++.|+.|..+|.. +.+-.+.. +. ..+.+ -.+. ++ .++.+. .+|.|+.||..+++..
T Consensus 119 ~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 196 (689)
T 1yiq_A 119 VWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVV-NG-KVVIGNGGAEFGVRGYVTAYDAETGKEA 196 (689)
T ss_dssp EETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred EECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEE-CC-EEEEEeCCCccCCCCEEEEEECCCCcEE
Confidence 356788888889999999864 22222211 11 11111 1111 44 455443 3789999999999876
Q ss_pred eEEeecc-ccccc---e-e-EeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCC------------
Q 012007 197 VHKRVGS-LPTFK---D-Y-VKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKT------------ 258 (473)
Q Consensus 197 ~~~~~~~-~~~~~---~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~------------ 258 (473)
-...... .+... . + ............ ...++......++++++..+++.+..++.
T Consensus 197 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~-------~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~g 269 (689)
T 1yiq_A 197 WRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYV-------EQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKG 269 (689)
T ss_dssp EEEESSCCCTTSCCCSHHHHHHHTTCCSSTHH-------HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCS
T ss_pred EEecccCCCcccccccccccccccccCCceee-------ecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCC
Confidence 6554211 00000 0 0 000000000000 00012223346788898899999987763
Q ss_pred -------EEEEEcCCCeeeEEeec--CC-------CceeEEEEcCCC----EEEEEeCCCcEEEEeCcccCCCcceeee-
Q 012007 259 -------LKVWRISDCKCLESINA--HD-------DAINSVVAGFDS----LVFTGSADGTVKVWRRELQGKGTKHCLA- 317 (473)
Q Consensus 259 -------v~vwd~~~~~~~~~~~~--~~-------~~v~~l~~~~~~----~l~s~~~dg~i~vwd~~~~~~~~~~~~~- 317 (473)
|..||..+|+.+..++. |. ..+.......++ .++.++.+|.++++|.++++........
T Consensus 270 d~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~ 349 (689)
T 1yiq_A 270 DNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVP 349 (689)
T ss_dssp CCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSC
T ss_pred CceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccc
Confidence 99999999999988764 21 111111211233 6888999999999998765431100000
Q ss_pred ----ee-----------------eccCCcc-----------EEEEEEccCCCEEEEeCC---------------------
Q 012007 318 ----QV-----------------LLKHENA-----------VTALAVNQESAVVYCGSS--------------------- 344 (473)
Q Consensus 318 ----~~-----------------~~~~~~~-----------v~~l~~~~~~~~l~~~~~--------------------- 344 (473)
.. ....... -..++++|+..++++...
T Consensus 350 ~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~ 429 (689)
T 1yiq_A 350 QSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSM 429 (689)
T ss_dssp CSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTS
T ss_pred cccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccc
Confidence 00 0000000 123788888887776522
Q ss_pred ------------------------CCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCce
Q 012007 345 ------------------------DGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAH 400 (473)
Q Consensus 345 ------------------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 400 (473)
+|.|..||+.+++..-....+....--.+...+.+++.|+.||.|+.||.++ .
T Consensus 430 ~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~t---G 506 (689)
T 1yiq_A 430 YQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADT---G 506 (689)
T ss_dssp CCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTT---C
T ss_pred cccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCC---C
Confidence 3779999998876543332222111135667889999999999999999999 4
Q ss_pred eEEEEecCCCC-ceeEEEEecCCC
Q 012007 401 SCLAVLTGHTG-PVKCLAVEEDRD 423 (473)
Q Consensus 401 ~~~~~~~~h~~-~V~~l~~~~~~~ 423 (473)
+.+..+....+ .-.-+.|..+++
T Consensus 507 ~~lw~~~~~~~~~~~p~ty~~~G~ 530 (689)
T 1yiq_A 507 EKLWEQPAASGVMAAPVTYSVDGE 530 (689)
T ss_dssp CEEEEEECSSCCCSCCEEEEETTE
T ss_pred ccceeeeCCCCcccCceEEEECCE
Confidence 55655553322 224567777776
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=6.7e-09 Score=106.53 Aligned_cols=233 Identities=15% Similarity=0.118 Sum_probs=138.9
Q ss_pred EEEecCCEEEEe-----eCCCcEEEeeCCccccccccCccc--EEEEEEeCCCCEEEEEeCCC-------------eEEE
Q 012007 128 SLAASGDLLYTG-----SDSKNIRVWKNLKEFSGFKSNSGL--VKAIIISGDSNKIFTGHQDG-------------KIRI 187 (473)
Q Consensus 128 ~~~~~g~~l~tg-----~~dg~i~vwd~~~~~~~~~~h~~~--V~~l~~s~~~~~l~s~~~dg-------------~i~v 187 (473)
++++||++||.+ +.+..|++||+..... +..+... ...++|+ |++.|+.+..+. .|++
T Consensus 135 ~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~-~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~ 212 (693)
T 3iuj_A 135 SFSRDGRILAYSLSLAGSDWREIHLMDVESKQP-LETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYF 212 (693)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEEEETTTCSE-EEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEE
T ss_pred EECCCCCEEEEEEecCCCceEEEEEEECCCCCC-CccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEE
Confidence 567789988843 3345799999763321 1112222 3578999 999999888774 3889
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee-ccCCeeEEEEcCCCCEEEEEeC----CCCEEEE
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR-HYDAVSCLSLNAEQGLLYSGSW----DKTLKVW 262 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~s~s~----dg~v~vw 262 (473)
|++.+........... .. |...+..+.|+|||++|+.... +..|+++
T Consensus 213 ~~lgt~~~~~~~v~~~----------------------------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~ 264 (693)
T 3iuj_A 213 HRLGTAQEDDRLVFGA----------------------------IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVK 264 (693)
T ss_dssp EETTSCGGGCEEEESC----------------------------SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEE
T ss_pred EECCCCcccceEEEec----------------------------CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEE
Confidence 9987764321111110 01 2334678899999998865442 2479999
Q ss_pred EcCCCe-eeEEeecCCCceeEEEEcCCC-EEEEEeCC---CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCC
Q 012007 263 RISDCK-CLESINAHDDAINSVVAGFDS-LVFTGSAD---GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESA 337 (473)
Q Consensus 263 d~~~~~-~~~~~~~~~~~v~~l~~~~~~-~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 337 (473)
|+.++. ....+..+...........++ +++....+ +.|..+|+...... ....+..|...+. .|+++++
T Consensus 265 d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~----~~~~l~~~~~~~~--~~s~~g~ 338 (693)
T 3iuj_A 265 DLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA----HWRDLIPERQQVL--TVHSGSG 338 (693)
T ss_dssp ETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGG----GCEEEECCCSSCE--EEEEETT
T ss_pred ECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc----ccEEEecCCCCEE--EEEEECC
Confidence 997763 345555566655554333344 44444443 57888888643210 1123344555554 8888888
Q ss_pred EEEEeCCCC---cEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCC----CcEEEEecCCC
Q 012007 338 VVYCGSSDG---LVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSAD----RNICLWRREES 397 (473)
Q Consensus 338 ~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~d----g~i~iwd~~~~ 397 (473)
.|+....++ .|++||+..... ..........+..++ +++..|+....+ +.|..||+.++
T Consensus 339 ~lv~~~~~~g~~~l~~~d~~g~~~-~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 339 YLFAEYMVDATARVEQFDYEGKRV-REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEEEEEEETTEEEEEEECTTSCEE-EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EEEEEEEECCeeEEEEEECCCCee-EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 877665544 688999875432 222222334444444 456555544434 78999998763
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-10 Score=110.28 Aligned_cols=202 Identities=13% Similarity=0.105 Sum_probs=108.5
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEE
Q 012007 172 DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLY 251 (473)
Q Consensus 172 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 251 (473)
++..|++++.||.|+.||..+++....... +.+.+..+..++..++
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----------------------------------~~~~s~p~~~~g~~~v 53 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE----------------------------------DPVLQVPTHVEEPAFL 53 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC----------------------------------CCSCCCC-----CCEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC----------------------------------CCceecceEcCCCEEE
Confidence 466999999999999999999987654432 2222333445677788
Q ss_pred EEeCCCCEEEEEcCCCeeeEEeecCCC-cee-EEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEE
Q 012007 252 SGSWDKTLKVWRISDCKCLESINAHDD-AIN-SVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTA 329 (473)
Q Consensus 252 s~s~dg~v~vwd~~~~~~~~~~~~~~~-~v~-~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~ 329 (473)
+++.|+.|+.||.++++.+..+..+.. .+. ...+..++.+++++.|+.|+.||.++++.. ..+..+. .
T Consensus 54 ~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~------w~~~~~~----~ 123 (369)
T 2hz6_A 54 PDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQ------QTLSSAF----A 123 (369)
T ss_dssp ECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC-----------------------
T ss_pred EeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEE------EEecCCC----c
Confidence 888999999999999988776654321 111 111123567888999999999999755421 1111111 2
Q ss_pred EEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecC---CEEEEEeCCCcEEEEecCCCCceeEEEEe
Q 012007 330 LAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAG---NLVFSGSADRNICLWRREESGAHSCLAVL 406 (473)
Q Consensus 330 l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 406 (473)
..++|++..+++++.|+.|+.||.+++...-.... +......+..+. ..+++++.||.|+.||..++ +.+...
T Consensus 124 ~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG---~~~W~~ 199 (369)
T 2hz6_A 124 DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATY-FDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG---DVLWIQ 199 (369)
T ss_dssp ---------EEEEEEEEEEECCCSSSSSCCCEEEE-EEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC---CEEEEE
T ss_pred ccccccCCEEEEEecCCEEEEEECCCCCEEEeEec-ccccCccccCCccccceEEEECCCCEEEEEECCCC---cEEEEe
Confidence 34566788899999999999999988755432211 111111111211 56778889999999999884 344444
Q ss_pred cCCCCcee-EEEEecCC
Q 012007 407 TGHTGPVK-CLAVEEDR 422 (473)
Q Consensus 407 ~~h~~~V~-~l~~~~~~ 422 (473)
.. ..++. ...+++++
T Consensus 200 ~~-~~pv~~~~~~~~dg 215 (369)
T 2hz6_A 200 NY-ASPVVAFYVWQREG 215 (369)
T ss_dssp EC-SSCEEEEEECTTSS
T ss_pred cC-CCceEEEEEecCCc
Confidence 32 33443 33444444
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=7.3e-08 Score=98.14 Aligned_cols=288 Identities=14% Similarity=0.083 Sum_probs=160.3
Q ss_pred EecCCEEEEeeCCCcEEEeeCC--ccccccccC-c----ccEEE-EEEeCCCCEEEEEeC------CCeEEEEeCCCCCe
Q 012007 130 AASGDLLYTGSDSKNIRVWKNL--KEFSGFKSN-S----GLVKA-IIISGDSNKIFTGHQ------DGKIRIWKVSRKNA 195 (473)
Q Consensus 130 ~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h-~----~~V~~-l~~s~~~~~l~s~~~------dg~i~vwd~~~~~~ 195 (473)
..++..|++++.|+.|..+|.. +.+-.+..+ . ..+.. ..+. ++ .++.++. +|.|+.+|..+++.
T Consensus 125 a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~ 202 (677)
T 1kb0_A 125 ALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-KG-KVIIGNGGAEYGVRGYITAYDAETGER 202 (677)
T ss_dssp EEETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred eEECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEE-CC-EEEEEecccccCCCCEEEEEECCCCcE
Confidence 3357788888889999999864 333232222 1 11111 1111 33 5555553 79999999999987
Q ss_pred eeEEeeccccccceeEeecC-CCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCC-----------------
Q 012007 196 SVHKRVGSLPTFKDYVKSSV-NPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDK----------------- 257 (473)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg----------------- 257 (473)
..............+..... ....... .........+.......+++++++.+++.+..++
T Consensus 203 ~W~~~~~~~~~~~~~~~~~~~~g~~~w~-~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~ 281 (677)
T 1kb0_A 203 KWRWFSVPGDPSKPFEDESMKRAARTWD-PSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLY 281 (677)
T ss_dssp EEEEESSCCCTTSCCSSHHHHHHHTTSC-GGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred EEEeccCCCCcccccccccccccccccc-ccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCee
Confidence 76655432110000000000 0000000 0000000001223334678899899999887664
Q ss_pred --CEEEEEcCCCeeeEEeecCCC---------ceeEEEEcCC----CEEEEEeCCCcEEEEeCcccCCCcceeeee----
Q 012007 258 --TLKVWRISDCKCLESINAHDD---------AINSVVAGFD----SLVFTGSADGTVKVWRRELQGKGTKHCLAQ---- 318 (473)
Q Consensus 258 --~v~vwd~~~~~~~~~~~~~~~---------~v~~l~~~~~----~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---- 318 (473)
.|..+|..+|+.+..++.... ....+....+ ..++.++.+|.|.++|.++++.........
T Consensus 282 ~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~ 361 (677)
T 1kb0_A 282 LASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWA 361 (677)
T ss_dssp TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred eEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcc
Confidence 499999999999888764211 1111222223 368889999999999987654311110000
Q ss_pred -eeccCCccE------------------------EEEEEccCCCEEEEeCC-----------------------------
Q 012007 319 -VLLKHENAV------------------------TALAVNQESAVVYCGSS----------------------------- 344 (473)
Q Consensus 319 -~~~~~~~~v------------------------~~l~~~~~~~~l~~~~~----------------------------- 344 (473)
.+......+ ..++++|+..++++...
T Consensus 362 ~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 441 (677)
T 1kb0_A 362 SGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWN 441 (677)
T ss_dssp EEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCC
T ss_pred cccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccc
Confidence 000000011 25788998888877532
Q ss_pred --------------CCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEec-CC
Q 012007 345 --------------DGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLT-GH 409 (473)
Q Consensus 345 --------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~h 409 (473)
.|.|..||+.+++..-....+....-..+..++.+++.++.||.+++||..++ +.+..+. ++
T Consensus 442 ~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG---~~lw~~~~~~ 518 (677)
T 1kb0_A 442 TAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATG---EKLWEAPTGT 518 (677)
T ss_dssp CCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC---CEEEEEECSS
T ss_pred cccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCC---ceeeeeeCCC
Confidence 27799999988765433332222222346678889999999999999999984 5555554 33
Q ss_pred CCceeEEEEecCCC
Q 012007 410 TGPVKCLAVEEDRD 423 (473)
Q Consensus 410 ~~~V~~l~~~~~~~ 423 (473)
...-.-+.+..+++
T Consensus 519 ~~~~~p~~y~~~G~ 532 (677)
T 1kb0_A 519 GVVAAPSTYMVDGR 532 (677)
T ss_dssp CCCSCCEEEEETTE
T ss_pred CcccCCEEEEeCCE
Confidence 22334566667776
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-07 Score=88.38 Aligned_cols=226 Identities=8% Similarity=0.039 Sum_probs=134.1
Q ss_pred EEe--CCCCEEEEE-eCCCeEEEEeCCCCC--eeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEE
Q 012007 168 IIS--GDSNKIFTG-HQDGKIRIWKVSRKN--ASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS 242 (473)
Q Consensus 168 ~~s--~~~~~l~s~-~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 242 (473)
.++ .++++|+.. ..++.|.|+|+.+.. ......+....... .. ....-..+.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~----------------------~~-g~s~Ph~~~ 144 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKK----------------------VS-GYSRLHTVH 144 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHH----------------------HH-CEEEEEEEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhccc----------------------cc-CCCccccee
Confidence 446 778877664 457899999997542 12221110000000 00 001233466
Q ss_pred EcCCCCEEEEEeCC------CCEEEEEcCCCeeeEEeecCCC---ceeEEEEcCCC-EEEEEe-----------------
Q 012007 243 LNAEQGLLYSGSWD------KTLKVWRISDCKCLESINAHDD---AINSVVAGFDS-LVFTGS----------------- 295 (473)
Q Consensus 243 ~~~~~~~l~s~s~d------g~v~vwd~~~~~~~~~~~~~~~---~v~~l~~~~~~-~l~s~~----------------- 295 (473)
..|+| +++++..+ +.|.++|.++++.+..+..... .-..+.|+|++ .+++..
T Consensus 145 ~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~ 223 (462)
T 2ece_A 145 CGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLK 223 (462)
T ss_dssp ECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHH
T ss_pred ECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhh
Confidence 77998 77766555 7899999999999998873322 23457788887 555553
Q ss_pred --CCCcEEEEeCcccCCCcceeeeeeecc--CCccEEEEEE--ccCCCEEEEeC------CCCcEEEEecCCccc-----
Q 012007 296 --ADGTVKVWRRELQGKGTKHCLAQVLLK--HENAVTALAV--NQESAVVYCGS------SDGLVNFWECEKHLS----- 358 (473)
Q Consensus 296 --~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~v~~l~~--~~~~~~l~~~~------~dg~i~iwd~~~~~~----- 358 (473)
.+.+|.+||+... .....+.. .......+.| +|+++++++++ .++.|.+|....+..
T Consensus 224 ~~~~d~V~v~D~~~~------k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~v 297 (462)
T 2ece_A 224 DRYGNRIHFWDLRKR------KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKV 297 (462)
T ss_dssp HHSCCEEEEEETTTT------EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEE
T ss_pred hccCCEEEEEECCCC------cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEE
Confidence 3789999999732 12222222 1234455656 99999988877 456787655432110
Q ss_pred -------cccee----e-----cCcceEEEEEecCCEEEEEeC-CCcEEEEecCCCCceeEEEEecCC-----------C
Q 012007 359 -------HGGVL----R-----GHKMAVLCLAAAGNLVFSGSA-DRNICLWRREESGAHSCLAVLTGH-----------T 410 (473)
Q Consensus 359 -------~~~~~----~-----~~~~~v~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~h-----------~ 410 (473)
....+ . +....-..+++||++|+++.. .+.|.+||+......+.+..+.-. .
T Consensus 298 Idi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~ 377 (462)
T 2ece_A 298 IEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH 377 (462)
T ss_dssp EEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC
T ss_pred EeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc
Confidence 00000 0 122334668899999888775 578999999754444555444321 0
Q ss_pred ---CceeEEEEecCCC
Q 012007 411 ---GPVKCLAVEEDRD 423 (473)
Q Consensus 411 ---~~V~~l~~~~~~~ 423 (473)
+.-..++++||++
T Consensus 378 ~~~ggPr~~~lSpDGk 393 (462)
T 2ece_A 378 KLTGAPQMLEISRDGR 393 (462)
T ss_dssp CCCSCCCCEEECTTSS
T ss_pred cCCCCCCEEEEcCCCC
Confidence 1257899999998
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.1e-08 Score=93.14 Aligned_cols=253 Identities=11% Similarity=0.115 Sum_probs=151.6
Q ss_pred ceeeeeeecccEEEEEecCCEEEEee----------CCCcEEEeeCCc--cccccccC-------cccEEEEEEeCCCCE
Q 012007 115 LIGSIVRKEGHIYSLAASGDLLYTGS----------DSKNIRVWKNLK--EFSGFKSN-------SGLVKAIIISGDSNK 175 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~~g~~l~tg~----------~dg~i~vwd~~~--~~~~~~~h-------~~~V~~l~~s~~~~~ 175 (473)
.+.++.--..+=..+++||++|+++. .++.|.++|... .+..+.-. ......++|+|||++
T Consensus 111 vv~~I~vG~~Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~ 190 (426)
T 3c75_H 111 ILGMTDGGFLPHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKN 190 (426)
T ss_dssp EEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSE
T ss_pred EEEEEECCCCCceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCE
Confidence 34444332233456778899887775 367899999653 33333211 123467899999999
Q ss_pred EEEEeC--CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC-CCEEEE
Q 012007 176 IFTGHQ--DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE-QGLLYS 252 (473)
Q Consensus 176 l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s 252 (473)
|+.+.. ++.|.+.|+.+.+......+.. +....|+ ...+++
T Consensus 191 lyV~n~~~~~~VsVID~~t~kvv~~I~v~g------------------------------------~~~~~p~g~~~~v~ 234 (426)
T 3c75_H 191 LLFYQFSPAPAVGVVDLEGKTFDRMLDVPD------------------------------------CYHIFPASPTVFYM 234 (426)
T ss_dssp EEEEECSSSCEEEEEETTTTEEEEEEECCS------------------------------------EEEEEEEETTEEEE
T ss_pred EEEEecCCCCeEEEEECCCCeEEEEEEcCC------------------------------------ceeeccCCCcEEEE
Confidence 999874 5789999999987655443221 0112222 244555
Q ss_pred EeCCCCEEEEEcCCCeeeEE----eecCCCce-eEEEEcCCC-EEEEEeCCCcEEEEeCcccCCC--cceeeee-eecc-
Q 012007 253 GSWDKTLKVWRISDCKCLES----INAHDDAI-NSVVAGFDS-LVFTGSADGTVKVWRRELQGKG--TKHCLAQ-VLLK- 322 (473)
Q Consensus 253 ~s~dg~v~vwd~~~~~~~~~----~~~~~~~v-~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~-~~~~- 322 (473)
.+.||.+.+.++.+++.... +.....++ ..+.+.+++ .++..+..+.|.+.|....... ....... ....
T Consensus 235 ~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~ 314 (426)
T 3c75_H 235 NCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERAD 314 (426)
T ss_dssp EETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGG
T ss_pred EcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccc
Confidence 56666666666654444321 11111121 123456665 5555567889999997532110 0000000 0000
Q ss_pred --CCccEEEEEEccCCCEEEEeCC----------CCcEEEEecCCcccccceeecCcceEEEEEecCC-EEEEEe-CCCc
Q 012007 323 --HENAVTALAVNQESAVVYCGSS----------DGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGN-LVFSGS-ADRN 388 (473)
Q Consensus 323 --~~~~v~~l~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~-~dg~ 388 (473)
.......++++++++.+++... ++.|.++|..+.+....+..+....-..++++|+ ++++.. .++.
T Consensus 315 g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~ 394 (426)
T 3c75_H 315 DWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQT 394 (426)
T ss_dssp TEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTE
T ss_pred ccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCe
Confidence 0111123689999887777642 3579999999877666565555556677888998 888887 5899
Q ss_pred EEEEecCCCCceeEEEEe
Q 012007 389 ICLWRREESGAHSCLAVL 406 (473)
Q Consensus 389 i~iwd~~~~~~~~~~~~~ 406 (473)
|.++|+.+ .+.+..+
T Consensus 395 VsVID~~t---~kvv~tI 409 (426)
T 3c75_H 395 LHIYDAAT---GEELRSV 409 (426)
T ss_dssp EEEEETTT---CCEEEEE
T ss_pred EEEEECCC---CCEEEEe
Confidence 99999998 5666665
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.00 E-value=7.6e-08 Score=98.21 Aligned_cols=239 Identities=10% Similarity=0.081 Sum_probs=142.5
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCeeeEEeec-cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEE
Q 012007 173 SNKIFTGHQDGKIRIWKVSRKNASVHKRVG-SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLY 251 (473)
Q Consensus 173 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 251 (473)
+..|+.++.|+.|..+|..+++..-..... ....... ....++ + .+ ..++
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~-----------------------~~~sP~--v---~~-g~v~ 171 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYT-----------------------ITGAPR--V---VN-GKVV 171 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCB-----------------------CCSCCE--E---ET-TEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCcc-----------------------ccCCcE--E---EC-CEEE
Confidence 458888999999999999999876655432 1000000 001111 1 13 3444
Q ss_pred EEe------CCCCEEEEEcCCCeeeEEeecCC-------------------------------CceeEEEEcCC-CEEEE
Q 012007 252 SGS------WDKTLKVWRISDCKCLESINAHD-------------------------------DAINSVVAGFD-SLVFT 293 (473)
Q Consensus 252 s~s------~dg~v~vwd~~~~~~~~~~~~~~-------------------------------~~v~~l~~~~~-~~l~s 293 (473)
+++ .++.|+.||.++|+.+..+.... .....+.+.++ ++++.
T Consensus 172 vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~ 251 (689)
T 1yiq_A 172 IGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYI 251 (689)
T ss_dssp ECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEE
T ss_pred EEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEE
Confidence 443 36899999999999987765210 00124566665 48888
Q ss_pred EeCCCc-------------------EEEEeCcccCCCcceeeeeeeccCC-------ccEEEEEEccCCC---EEEEeCC
Q 012007 294 GSADGT-------------------VKVWRRELQGKGTKHCLAQVLLKHE-------NAVTALAVNQESA---VVYCGSS 344 (473)
Q Consensus 294 ~~~dg~-------------------i~vwd~~~~~~~~~~~~~~~~~~~~-------~~v~~l~~~~~~~---~l~~~~~ 344 (473)
+..++. |..||.++++. .... ....|. ..+.......+|+ .++.++.
T Consensus 252 ~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~--~W~~--~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~ 327 (689)
T 1yiq_A 252 GVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEY--VWHY--QTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPK 327 (689)
T ss_dssp ECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCE--EEEE--ESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCT
T ss_pred eCCCCCccccCCCCCCCCCceeeeeEEEEEccCCce--eEee--ecCCcccccccCCCCcEEEeeccCCcEEEEEEEECC
Confidence 877763 89999886542 1111 111121 1222222233554 7889999
Q ss_pred CCcEEEEecCCcccccceeec----------------------------------------CcceEEEEEecCCEEEEEe
Q 012007 345 DGLVNFWECEKHLSHGGVLRG----------------------------------------HKMAVLCLAAAGNLVFSGS 384 (473)
Q Consensus 345 dg~i~iwd~~~~~~~~~~~~~----------------------------------------~~~~v~~~~~~~~~l~s~~ 384 (473)
+|.++++|.++++.+...... +.-.-.+++++..+|++..
T Consensus 328 ~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~ 407 (689)
T 1yiq_A 328 NGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPA 407 (689)
T ss_dssp TSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEE
T ss_pred CCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEec
Confidence 999999999877553111000 0001135566666766653
Q ss_pred C---------------------------------------------CCcEEEEecCCCCceeEEEEecCCCCceeEEEEe
Q 012007 385 A---------------------------------------------DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVE 419 (473)
Q Consensus 385 ~---------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~ 419 (473)
. +|.|..||+.++ +.+..+..+. ++..-.+.
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~~~-~~~~g~~~ 483 (689)
T 1yiq_A 408 HIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ---QAAWEVPYVT-IFNGGTLS 483 (689)
T ss_dssp EECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT---EEEEEEEESS-SCCCCEEE
T ss_pred cccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC---CeEeEccCCC-CccCccce
Confidence 2 377999999884 4444444332 33333555
Q ss_pred cCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccC
Q 012007 420 EDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKG 461 (473)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~ 461 (473)
..+. +++.|+.||.|+.||..+++..++.
T Consensus 484 tagg-------------lvf~gt~dg~l~a~D~~tG~~lw~~ 512 (689)
T 1yiq_A 484 TAGN-------------LVFEGSADGRVIAYAADTGEKLWEQ 512 (689)
T ss_dssp ETTT-------------EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ECCC-------------EEEEECCCCcEEEEECCCCccceee
Confidence 5555 7889999999999999999876553
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=9.9e-08 Score=97.15 Aligned_cols=238 Identities=9% Similarity=0.091 Sum_probs=145.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCeeeEEeec-cccccceeEeecCCCcceEEEeecceeeEeeccCCeeE-EEEcCCCCE
Q 012007 172 DSNKIFTGHQDGKIRIWKVSRKNASVHKRVG-SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC-LSLNAEQGL 249 (473)
Q Consensus 172 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~~~~~~~ 249 (473)
++..|+.++.|+.|..+|..+++........ ... ....+.. ... .+..
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~----------------------------~~~~~~~~p~v--~~~~ 176 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQK----------------------------GSLTITGAPRV--FKGK 176 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCC----------------------------SSCBCCSCCEE--ETTE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcC----------------------------cCcccccCcEE--ECCE
Confidence 3558888999999999999999877655432 100 0000100 001 1345
Q ss_pred EEEEeC------CCCEEEEEcCCCeeeEEeecCCCc--------------------------------eeEEEEcCCC-E
Q 012007 250 LYSGSW------DKTLKVWRISDCKCLESINAHDDA--------------------------------INSVVAGFDS-L 290 (473)
Q Consensus 250 l~s~s~------dg~v~vwd~~~~~~~~~~~~~~~~--------------------------------v~~l~~~~~~-~ 290 (473)
+++++. ++.|+.+|..+|+.+..+...... ...+.+.+++ +
T Consensus 177 v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~ 256 (677)
T 1kb0_A 177 VIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNT 256 (677)
T ss_dssp EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTE
T ss_pred EEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCE
Confidence 555543 689999999999998877643211 1245666654 7
Q ss_pred EEEEeCCC-------------------cEEEEeCcccCCCcceeeeeeeccCC-------ccEEEEEEccCC---CEEEE
Q 012007 291 VFTGSADG-------------------TVKVWRRELQGKGTKHCLAQVLLKHE-------NAVTALAVNQES---AVVYC 341 (473)
Q Consensus 291 l~s~~~dg-------------------~i~vwd~~~~~~~~~~~~~~~~~~~~-------~~v~~l~~~~~~---~~l~~ 341 (473)
++.+..++ .|..+|.++++. .... ....|. .....+....+| ..|+.
T Consensus 257 vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~--~W~~--~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~ 332 (677)
T 1kb0_A 257 MYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKY--KWHY--QETPGDNWDYTSTQPMILADIKIAGKPRKVILH 332 (677)
T ss_dssp EEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE--EEEE--ESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEE
T ss_pred EEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCE--EEEE--ecCCCcccccccCCCcEEEecccCCcEeeEEEE
Confidence 77776654 488888875432 1111 111121 122223333467 68999
Q ss_pred eCCCCcEEEEecCCcccccceeecC------------------------------------cceEEEEEecCCEEEEEeC
Q 012007 342 GSSDGLVNFWECEKHLSHGGVLRGH------------------------------------KMAVLCLAAAGNLVFSGSA 385 (473)
Q Consensus 342 ~~~dg~i~iwd~~~~~~~~~~~~~~------------------------------------~~~v~~~~~~~~~l~s~~~ 385 (473)
++.+|.|+++|.++++.+....... .-...++++++.++++...
T Consensus 333 ~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~ 412 (677)
T 1kb0_A 333 APKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQ 412 (677)
T ss_dssp CCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEE
T ss_pred ECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeCh
Confidence 9999999999998765432221110 0012356667777777543
Q ss_pred -------------------------------------------CCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCC
Q 012007 386 -------------------------------------------DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDR 422 (473)
Q Consensus 386 -------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 422 (473)
.|.|..||+.++ +.+..+. +..++....+...+
T Consensus 413 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~-~~~~~~~g~~~~~g 488 (677)
T 1kb0_A 413 NVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ---KAAWSVE-HVSPWNGGTLTTAG 488 (677)
T ss_dssp ECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT---EEEEEEE-ESSSCCCCEEEETT
T ss_pred hcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC---cEEeecC-CCCCCcCcceEeCC
Confidence 267999999884 4444433 23345555566666
Q ss_pred CCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 423 DHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 423 ~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
. +++.++.||.+++||..+++....
T Consensus 489 ~-------------~v~~g~~dg~l~a~D~~tG~~lw~ 513 (677)
T 1kb0_A 489 N-------------VVFQGTADGRLVAYHAATGEKLWE 513 (677)
T ss_dssp T-------------EEEEECTTSEEEEEETTTCCEEEE
T ss_pred C-------------EEEEECCCCcEEEEECCCCceeee
Confidence 6 788889999999999999876554
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.7e-07 Score=87.96 Aligned_cols=220 Identities=14% Similarity=0.159 Sum_probs=139.6
Q ss_pred ecCCE-EEEeeCCCcEEEeeCCc------cccccc------c-CcccEEEEEEeCCCCEEEEEeCC------CeEEEEeC
Q 012007 131 ASGDL-LYTGSDSKNIRVWKNLK------EFSGFK------S-NSGLVKAIIISGDSNKIFTGHQD------GKIRIWKV 190 (473)
Q Consensus 131 ~~g~~-l~tg~~dg~i~vwd~~~------~~~~~~------~-h~~~V~~l~~s~~~~~l~s~~~d------g~i~vwd~ 190 (473)
.++++ ++.|..++.|.|+|+.. ..+.+. . ....-..+...|+| +++++..+ |.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 44565 45566688999999752 222221 0 11245567888999 77776655 78999999
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe----------------
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS---------------- 254 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s---------------- 254 (473)
.+.+.......... -...-..+.|+|+++.+++..
T Consensus 172 ~T~~v~~~~~~~~~-----------------------------~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~ 222 (462)
T 2ece_A 172 YSFEPLGKWEIDRG-----------------------------DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHL 222 (462)
T ss_dssp TTCCEEEECCSBCT-----------------------------TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTH
T ss_pred CCCeEEEEEccCCC-----------------------------CccccceEEECCCCCEEEEccCcCccccccccchhhh
Confidence 98887655543211 111223577899999999885
Q ss_pred ---CCCCEEEEEcCCCeeeEEeecCC--CceeEEEE--cCCC-EEEEEe------CCCcEEEEeCcccCCCcceeeeee-
Q 012007 255 ---WDKTLKVWRISDCKCLESINAHD--DAINSVVA--GFDS-LVFTGS------ADGTVKVWRRELQGKGTKHCLAQV- 319 (473)
Q Consensus 255 ---~dg~v~vwd~~~~~~~~~~~~~~--~~v~~l~~--~~~~-~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~- 319 (473)
.+.+|.+||+.+++.+.++.... .....+.+ +|++ ++++++ .+++|.+|..+. +. ....+.
T Consensus 223 ~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~---~~~~~vI 298 (462)
T 2ece_A 223 KDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GK---WNAEKVI 298 (462)
T ss_dssp HHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TE---EEEEEEE
T ss_pred hhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-Cc---eeEEEEE
Confidence 36899999999998888887531 23445555 8887 444444 567888776642 11 111111
Q ss_pred -ecc----------------CCccEEEEEEccCCCEEEEeCC-CCcEEEEecCCc---ccccceeec-------C-----
Q 012007 320 -LLK----------------HENAVTALAVNQESAVVYCGSS-DGLVNFWECEKH---LSHGGVLRG-------H----- 366 (473)
Q Consensus 320 -~~~----------------~~~~v~~l~~~~~~~~l~~~~~-dg~i~iwd~~~~---~~~~~~~~~-------~----- 366 (473)
+.. -......|.+++|+++|+++.. .+.|.+||+... .....+..+ |
T Consensus 299 di~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~ 378 (462)
T 2ece_A 299 EIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHK 378 (462)
T ss_dssp EECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCC
T ss_pred eCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccccc
Confidence 000 0245788999999999888765 679999998632 122222222 0
Q ss_pred ---cceEEEEEecCCEEEEEe
Q 012007 367 ---KMAVLCLAAAGNLVFSGS 384 (473)
Q Consensus 367 ---~~~v~~~~~~~~~l~s~~ 384 (473)
.-.-..++++|++|+++.
T Consensus 379 ~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 379 LTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCCEEEEcCCCCEEEEEc
Confidence 124477889999999887
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-08 Score=94.25 Aligned_cols=251 Identities=14% Similarity=0.118 Sum_probs=150.8
Q ss_pred CCEEEEeeCCCcEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeE
Q 012007 133 GDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYV 211 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 211 (473)
+..|+.++.++.|..||.. +.+..+..+...+.++...+++. |+.++.+ |..+|. +++.......
T Consensus 30 ~g~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~---------- 95 (330)
T 3hxj_A 30 NGTIYLGSSNKNLYAINTDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDT---------- 95 (330)
T ss_dssp TSCEECSSTTTTTEEECTTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC----------
T ss_pred CCeEEEEcCCCEEEEECCCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEEC----------
Confidence 4456777778888888822 22223333445567777777774 5555444 888885 3332211110
Q ss_pred eecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEE
Q 012007 212 KSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLV 291 (473)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l 291 (473)
.........+. +..|+.++.++.|..+|.. ++.......+...+.++...+++.+
T Consensus 96 ----------------------~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l 150 (330)
T 3hxj_A 96 ----------------------KKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTI 150 (330)
T ss_dssp ---------------------------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCE
T ss_pred ----------------------CCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEE
Confidence 01111122222 5678888889999999988 8777777666666777777778888
Q ss_pred EEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEE
Q 012007 292 FTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVL 371 (473)
Q Consensus 292 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 371 (473)
+.++.++.|..+|.. +.. ..........+.++.+.+++.+++ ++ +.|..+| .++.... ........+.
T Consensus 151 ~vgt~~~~l~~~d~~-g~~------~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~-~~~~~~~~~~ 218 (330)
T 3hxj_A 151 YVGSNDNYLYAINPD-GTE------KWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKW-NFYAGYWTVT 218 (330)
T ss_dssp EEECTTSEEEEECTT-SCE------EEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEE-EECCSSCCCS
T ss_pred EEEcCCCEEEEECCC-CCE------eEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEE-EEccCCccee
Confidence 889999999999976 221 111222344566677777777554 44 7899999 4433321 2222223344
Q ss_pred EEEecCC-EEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEE
Q 012007 372 CLAAAGN-LVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVW 450 (473)
Q Consensus 372 ~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW 450 (473)
++..+.+ .|..++.++.|..++... ..+..+......+..+.+.+++. |..++.+|.|..+
T Consensus 219 ~~~~~~~g~l~v~t~~~gl~~~~~~g----~~~~~~~~~~~~~~~~~~~~~g~--------------l~v~t~~ggl~~~ 280 (330)
T 3hxj_A 219 RPAISEDGTIYVTSLDGHLYAINPDG----TEKWRFKTGKRIESSPVIGNTDT--------------IYFGSYDGHLYAI 280 (330)
T ss_dssp CCEECTTSCEEEEETTTEEEEECTTS----CEEEEEECSSCCCSCCEECTTSC--------------EEEECTTCEEEEE
T ss_pred ceEECCCCeEEEEcCCCeEEEECCCC----CEeEEeeCCCCccccceEcCCCe--------------EEEecCCCCEEEE
Confidence 4444533 677777788888887533 23334443344455566665554 6777788888888
Q ss_pred Ec
Q 012007 451 RV 452 (473)
Q Consensus 451 ~i 452 (473)
+.
T Consensus 281 d~ 282 (330)
T 3hxj_A 281 NP 282 (330)
T ss_dssp CT
T ss_pred CC
Confidence 85
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.2e-08 Score=93.37 Aligned_cols=235 Identities=10% Similarity=0.106 Sum_probs=143.2
Q ss_pred ccEEEEEEeCCCCEEEEEe--CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 162 GLVKAIIISGDSNKIFTGH--QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
..+..|+++++|+.+++.. .++.++||.+.+++.. . .+.... ....+...+.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~---~---~p~~~~--------------------~~~~~~~~p~ 70 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI---P---FPPQSG--------------------NAIITFDTVL 70 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE---E---SCCCCS--------------------SCCCCCSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee---c---CCCccc--------------------CcccceeEee
Confidence 6789999999999888864 2343666666533211 0 010000 0012567899
Q ss_pred EEEEcCCCCEEEEEeC-----CCCEEEEEcCCCeeeEEeecC------CCceeEEEEcCC-CEE-EEEe---CCCcEEEE
Q 012007 240 CLSLNAEQGLLYSGSW-----DKTLKVWRISDCKCLESINAH------DDAINSVVAGFD-SLV-FTGS---ADGTVKVW 303 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~-----dg~v~vwd~~~~~~~~~~~~~------~~~v~~l~~~~~-~~l-~s~~---~dg~i~vw 303 (473)
.++++++++++++-.. ++.|.+||+.+++.+..+... ...+..+++.++ +.+ ++-. .++.|.+|
T Consensus 71 gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~ 150 (343)
T 2qe8_A 71 GIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRV 150 (343)
T ss_dssp EEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEE
T ss_pred EEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEE
Confidence 9999999875555433 578999999999877766532 235688999865 554 4444 67899999
Q ss_pred eCcccCCCcceeeeeeeccCCccEE-EEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEE
Q 012007 304 RRELQGKGTKHCLAQVLLKHENAVT-ALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFS 382 (473)
Q Consensus 304 d~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s 382 (473)
|+..+. ....+..|..... ...+.+++..+.+...++.++.|.. ...-++++++++.|+.
T Consensus 151 d~~~g~------~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~-------------~~~gia~s~dg~~ly~ 211 (343)
T 2qe8_A 151 DLQTGL------AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL-------------GVNGIVLDAENEWLYL 211 (343)
T ss_dssp ETTTCC------EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC-------------CEEEEEECTTSCEEEE
T ss_pred ECCCCC------EEEEecCCCcccccccceeECCEEEEeccCCCceeceec-------------ccceeEeccCCCEEEE
Confidence 986322 1222222211100 1334456777777778888766641 1123677888998888
Q ss_pred EeCCC-cEEEEecC---CCC--cee---EEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 383 GSADR-NICLWRRE---ESG--AHS---CLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 383 ~~~dg-~i~iwd~~---~~~--~~~---~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
+..++ .|..++.. ... ... .+. ..++.+....+++++++. ++++...++.|.+|+..
T Consensus 212 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~g~pdgia~d~~G~-------------l~va~~~~~~V~~~d~~ 277 (343)
T 2qe8_A 212 SPMHSTSMYRIKSADLSNLQLTDAELGSKIE-RYSEKPICDGISIDKDHN-------------IYVGDLAHSAIGVITSA 277 (343)
T ss_dssp EESSCSEEEEEEHHHHTCTTCCHHHHHTTCE-EEEECCSCSCEEECTTCC-------------EEEEEGGGTEEEEEETT
T ss_pred EeCCCCeEEEEEHHHhcCCCCChhhhhcceE-ecccCCCCceEEECCCCC-------------EEEEccCCCeEEEEECC
Confidence 87766 44444432 100 000 011 112334567899999987 88888889999999983
Q ss_pred CC
Q 012007 454 EH 455 (473)
Q Consensus 454 ~~ 455 (473)
.+
T Consensus 278 ~G 279 (343)
T 2qe8_A 278 DR 279 (343)
T ss_dssp TT
T ss_pred CC
Confidence 33
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=3e-10 Score=107.19 Aligned_cols=190 Identities=12% Similarity=0.092 Sum_probs=100.3
Q ss_pred CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCC
Q 012007 246 EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHE 324 (473)
Q Consensus 246 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 324 (473)
++..+++++.|+.|+.||..+|+.+..+.. +.+.+..+..++ .+++++.||.|+.||..+++...............
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 578899999999999999999999988876 444444444455 67777899999999987543211110000000001
Q ss_pred ccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEE
Q 012007 325 NAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLA 404 (473)
Q Consensus 325 ~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 404 (473)
.++ +. .+..|++++.|+.|+.||.+++...-.. ..+. ...+++++..|++++.|+.|+.||..++.......
T Consensus 86 sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~-~~~~--~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 157 (369)
T 2hz6_A 86 SPC----RS-SDGILYMGKKQDIWYVIDLLTGEKQQTL-SSAF--ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT 157 (369)
T ss_dssp CSC----C------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred Cce----Ee-cCCEEEEEeCCCEEEEEECCCCcEEEEe-cCCC--cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence 111 11 3456778888999999999887654322 2222 23345688899999999999999998854321111
Q ss_pred EecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 405 VLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 405 ~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
... ....++..+.. .++ .++.++.||.|+.||..+++..++
T Consensus 158 -~~~----~~~~~~~~~~~--------~~~--~v~~~~~dg~v~a~d~~tG~~~W~ 198 (369)
T 2hz6_A 158 -YFD----YAASLPEDDVD--------YKM--SHFVSNGDGLVVTVDSESGDVLWI 198 (369)
T ss_dssp -EEE----ECCBCCCCCTT--------CCC--CEEEEETSCEEEEECTTTCCEEEE
T ss_pred -ccc----ccCccccCCcc--------ccc--eEEEECCCCEEEEEECCCCcEEEE
Confidence 111 11222333210 000 467788899999999988876544
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=4.5e-08 Score=91.28 Aligned_cols=256 Identities=11% Similarity=0.088 Sum_probs=154.4
Q ss_pred cceeeeeeecccEEEEEecCCEEEEee----------CCCcEEEeeCC--ccccccccC-------cccEEEEEEeCCCC
Q 012007 114 GLIGSIVRKEGHIYSLAASGDLLYTGS----------DSKNIRVWKNL--KEFSGFKSN-------SGLVKAIIISGDSN 174 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~g~~l~tg~----------~dg~i~vwd~~--~~~~~~~~h-------~~~V~~l~~s~~~~ 174 (473)
..+.++.-...+-..+++||++++++. .++.|.+||.. +.+..+... ......++++|||+
T Consensus 57 ~v~~~i~vG~~P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk 136 (368)
T 1mda_H 57 VTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA 136 (368)
T ss_dssp EEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS
T ss_pred eEEEEEeCCCCCceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCC
Confidence 445555433334467788899888886 36899999975 334444322 12456899999999
Q ss_pred EEEEEeC--CCeEEE--EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCC-CE
Q 012007 175 KIFTGHQ--DGKIRI--WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQ-GL 249 (473)
Q Consensus 175 ~l~s~~~--dg~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~ 249 (473)
+|+++.. +..|.+ +|..+ ....... . |+.+.|++ ..
T Consensus 137 ~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-------------------------------~-----~~~~~p~g~~~ 177 (368)
T 1mda_H 137 CLLFFLFGSSAAAGLSVPGASD---DQLTKSA-------------------------------S-----CFHIHPGAAAT 177 (368)
T ss_dssp CEEEEECSSSCEEEEEETTTEE---EEEEECS-------------------------------S-----CCCCEEEETTE
T ss_pred EEEEEccCCCCeEEEEEEchhh---ceEEECC-------------------------------C-----ceEEccCCCeE
Confidence 9999875 457888 88866 1111110 0 01122332 34
Q ss_pred EEEEeCCCCEEEEEcCC-----CeeeE----EeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeee
Q 012007 250 LYSGSWDKTLKVWRISD-----CKCLE----SINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVL 320 (473)
Q Consensus 250 l~s~s~dg~v~vwd~~~-----~~~~~----~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 320 (473)
+++.+.|+.+.+.|+.+ ++.+. .+.....+. ....++.++..+. +.|.+.|+..... ......
T Consensus 178 ~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~----~v~~~~ 249 (368)
T 1mda_H 178 HYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGA----TMKAAI 249 (368)
T ss_dssp EECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCC----EEECCC
T ss_pred EEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcc----eEEEEE
Confidence 45566788888888876 44321 111122333 2444455555555 9999999853211 011100
Q ss_pred c-------cCC---ccEEEEEEccCCCEEEEeCC---------CCcEEEEecCCcccccceeecCcceEEEEEecCC-EE
Q 012007 321 L-------KHE---NAVTALAVNQESAVVYCGSS---------DGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGN-LV 380 (473)
Q Consensus 321 ~-------~~~---~~v~~l~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~l 380 (473)
. .+. .....++++|+++.++++.. ++.+.++|+.+.+....+..+....-+.++++|+ ++
T Consensus 250 ~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~ 329 (368)
T 1mda_H 250 DGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDN 329 (368)
T ss_dssp CSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEE
T ss_pred EeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEE
Confidence 0 011 11122689999988887533 2356699999876665555555555577788887 56
Q ss_pred EEEe-CCCcEEEEecCCCCceeEEEEecCCCCceeEEEEec
Q 012007 381 FSGS-ADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEE 420 (473)
Q Consensus 381 ~s~~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~ 420 (473)
++.. .++.|.++|+.+ .+.+..+..... ...+++.+
T Consensus 330 va~~~~~~~VsVID~~t---~kvv~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 330 YANSAGTEVLDIYDAAS---DQDQSSVELDKG-PESLSVQN 366 (368)
T ss_dssp EEEETTTTEEEEEESSS---CEEEEECCCCSC-CCEEECCC
T ss_pred EEccCCCCeEEEEECCC---CcEEEEEECCCC-CCEEEeec
Confidence 6666 599999999999 677777765443 45666654
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=3.6e-06 Score=75.23 Aligned_cols=219 Identities=5% Similarity=0.019 Sum_probs=134.1
Q ss_pred ccEEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE
Q 012007 162 GLVKAIIISGDSNKIFTGH-QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 240 (473)
..+..++|++++..|+.+. .++.|.+++........... ........
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~--------------------------------~~~~~p~~ 83 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR--------------------------------QDLGSPEG 83 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC--------------------------------TTCCCEEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE--------------------------------CCCCCccE
Confidence 4578999999766666554 46899999987654211110 02245678
Q ss_pred EEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC-CEEEEEeC---CCcEEEEeCcccCCCccee
Q 012007 241 LSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSA---DGTVKVWRRELQGKGTKHC 315 (473)
Q Consensus 241 l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~-~~l~s~~~---dg~i~vwd~~~~~~~~~~~ 315 (473)
+++++++..|+.+. ..+.|.++++..................+++.++ +.|+.+.. .+.|..+++.... ..
T Consensus 84 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~----~~ 159 (267)
T 1npe_A 84 IALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN----RR 159 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC----CE
T ss_pred EEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC----cE
Confidence 99999766666654 4678999998643322222222245788999984 66655554 3678888875211 11
Q ss_pred eeeeeccCCccEEEEEEccCCCEEE-EeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEe-CCCcEEEEe
Q 012007 316 LAQVLLKHENAVTALAVNQESAVVY-CGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGS-ADRNICLWR 393 (473)
Q Consensus 316 ~~~~~~~~~~~v~~l~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~-~dg~i~iwd 393 (473)
. ...........+++++++..|+ +-...+.|.++|....... ....+. .....++.++..|+.+. ..+.|.++|
T Consensus 160 ~--~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-~~~~~~-~~P~gi~~d~~~lyva~~~~~~v~~~d 235 (267)
T 1npe_A 160 I--LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR-KVLEGL-QYPFAVTSYGKNLYYTDWKTNSVIAMD 235 (267)
T ss_dssp E--EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE-EEEECC-CSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred E--EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE-EEecCC-CCceEEEEeCCEEEEEECCCCeEEEEe
Confidence 1 1112234578999999876554 4555688999998753221 222221 22245566666666655 558899999
Q ss_pred cCCCCceeEEEEecCCC-CceeEEEEecCCC
Q 012007 394 REESGAHSCLAVLTGHT-GPVKCLAVEEDRD 423 (473)
Q Consensus 394 ~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~ 423 (473)
..+ .+.+..+.... ....+|++.|++.
T Consensus 236 ~~~---g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 236 LAI---SKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTT---TEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCC---CCceEEEccccccccceeeecCccC
Confidence 887 35555554322 2467888888864
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-06 Score=82.77 Aligned_cols=234 Identities=12% Similarity=0.102 Sum_probs=140.4
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEE
Q 012007 173 SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYS 252 (473)
Q Consensus 173 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s 252 (473)
+..|+.++.++.|..+|..+++.............. ......+.+. ...++..+++
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~-----------------------~~~~~~~~~~-~~~~~~~v~v 108 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWF-----------------------SKEPALLSGG-VTVSGGHVYI 108 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CC-----------------------SCCCCCEEEE-EEEETTEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccc-----------------------cccCcccccC-ceEeCCEEEE
Confidence 458888888999999999988866544432100000 0001122111 1124567888
Q ss_pred EeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccE-----
Q 012007 253 GSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAV----- 327 (473)
Q Consensus 253 ~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v----- 327 (473)
++.++.|..+|..+++.+............... .++.++.++.++.|..+|.+++... ... .. ...+
T Consensus 109 ~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~--W~~----~~-~~~~~~~~~ 180 (376)
T 3q7m_A 109 GSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVK--WTV----NL-DMPSLSLRG 180 (376)
T ss_dssp EETTSEEEEEETTTCCEEEEEECSSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEE--EEE----EC-CC-----CC
T ss_pred EcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEE--EEE----eC-CCCceeecC
Confidence 999999999999999988777654332222222 2568888999999999998754321 111 10 0111
Q ss_pred -EEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcce---------E-EEEEecCCEEEEEeCCCcEEEEecCC
Q 012007 328 -TALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMA---------V-LCLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 328 -~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---------v-~~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
...... +..++++..++.|..+|..++...-......... + ......+..++.++.++.+..+|..+
T Consensus 181 ~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~t 258 (376)
T 3q7m_A 181 ESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRS 258 (376)
T ss_dssp CCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTT
T ss_pred CCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCC
Confidence 111222 4567888889999999998765432221111000 0 11122467888888899999999988
Q ss_pred CCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 397 SGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 397 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
+ +.+..... .....+... +. .|+.++.++.|..+|..+++..++
T Consensus 259 G---~~~w~~~~--~~~~~~~~~--~~-------------~l~~~~~~g~l~~~d~~tG~~~w~ 302 (376)
T 3q7m_A 259 G---QIMWKREL--GSVNDFIVD--GN-------------RIYLVDQNDRVMALTIDGGVTLWT 302 (376)
T ss_dssp C---CEEEEECC--CCEEEEEEE--TT-------------EEEEEETTCCEEEEETTTCCEEEE
T ss_pred C---cEEeeccC--CCCCCceEE--CC-------------EEEEEcCCCeEEEEECCCCcEEEe
Confidence 4 33333332 234444443 23 577788899999999988875543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.6e-05 Score=82.82 Aligned_cols=281 Identities=10% Similarity=0.176 Sum_probs=168.0
Q ss_pred ccEEEEEec-CCEEEEeeCCCcEEEeeCCc-ccccccc-------CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC
Q 012007 124 GHIYSLAAS-GDLLYTGSDSKNIRVWKNLK-EFSGFKS-------NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKN 194 (473)
Q Consensus 124 ~~V~~~~~~-g~~l~tg~~dg~i~vwd~~~-~~~~~~~-------h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~ 194 (473)
..|.++..| ...|..|+.++-|..|+... .+..+.. ....|.++...++|+ |..|+.++-|..|+..++.
T Consensus 310 ~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~ 388 (795)
T 4a2l_A 310 RSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQR 388 (795)
T ss_dssp SCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCC
T ss_pred CcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCc
Confidence 458888877 33567788777788887542 2222211 245699999988885 5557777779999987665
Q ss_pred eeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee
Q 012007 195 ASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN 274 (473)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 274 (473)
..........+. ..-....|.++...+++..|..|+.++-|.+||..+++......
T Consensus 389 ~~~~~~~~~~~~------------------------~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~ 444 (795)
T 4a2l_A 389 FTSYTLQEDESA------------------------RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQ 444 (795)
T ss_dssp EEEECCC------------------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECT
T ss_pred EEEEecCCCCcc------------------------cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeec
Confidence 322111000000 00024578999988888867888887789999988776443221
Q ss_pred ----cCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeee----ccCCccEEEEEEccCCCEEEEeCCCC
Q 012007 275 ----AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVL----LKHENAVTALAVNQESAVVYCGSSDG 346 (473)
Q Consensus 275 ----~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~----~~~~~~v~~l~~~~~~~~l~~~~~dg 346 (473)
.....|.++...+++.|..|+. +-|.+||..... ....... .-....|.++...+++.+.+... +
T Consensus 445 ~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~ 517 (795)
T 4a2l_A 445 RNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRS----FTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--E 517 (795)
T ss_dssp TTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTE----EEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--S
T ss_pred CCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCe----EEEccccccccccCCceEEEEEECCCCCEEEEeC--C
Confidence 2345788998888887777777 558888875321 1111100 11236789999999888766554 4
Q ss_pred cEEEEecCCcccccc----eeecCcceEEEEEec--CCEEEEEeCCCcEEEEecCCCCceeEEEEecCC-CCceeEEEEe
Q 012007 347 LVNFWECEKHLSHGG----VLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHSCLAVLTGH-TGPVKCLAVE 419 (473)
Q Consensus 347 ~i~iwd~~~~~~~~~----~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~V~~l~~~ 419 (473)
-|..||..+...... ........+.++..+ |. |..|+.. .|..||..+. .........+- ...|.++...
T Consensus 518 Gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigT~~-Gl~~~d~~~~-~~~~~~~~~gl~~~~i~~i~~d 594 (795)
T 4a2l_A 518 GLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGI-IWVGTRE-GFYCFNEKDK-QIKRYNTTNGLPNNVVYGILED 594 (795)
T ss_dssp CEEEEEEETTEEEECCCSCSCGGGGSCEEEEEECTTSC-EEEEESS-CEEEEETTTT-EEEEECGGGTCSCSCEEEEEEC
T ss_pred ceEEEeCCCCeEEEecCCCCCCCCCCeeEEEEECCCCC-EEEEeCC-CceeECCCCC-cEEEeCCCCCCchhheEEEEEC
Confidence 588888765432000 001133467777765 44 4555545 5888988762 11111111221 3468888888
Q ss_pred cCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 420 EDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
+++. +.+++ . +-|..|+...
T Consensus 595 ~~g~-------------lWi~t-~-~Gl~~~~~~~ 614 (795)
T 4a2l_A 595 SFGR-------------LWLST-N-RGISCFNPET 614 (795)
T ss_dssp TTSC-------------EEEEE-T-TEEEEEETTT
T ss_pred CCCC-------------EEEEc-C-CceEEEcCCC
Confidence 8876 44444 3 3466677654
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=3.4e-05 Score=80.44 Aligned_cols=282 Identities=12% Similarity=0.202 Sum_probs=168.5
Q ss_pred EEEEEec-CCEEEEeeCCCcEEEeeCCc-ccccc--ccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEee
Q 012007 126 IYSLAAS-GDLLYTGSDSKNIRVWKNLK-EFSGF--KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRV 201 (473)
Q Consensus 126 V~~~~~~-g~~l~tg~~dg~i~vwd~~~-~~~~~--~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 201 (473)
|.++..+ ...|..|+.++-|..|+... .+..+ ..+...|.+|...+++. |..|+.++-|.+||..+++.......
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~ 253 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIKNYLHS 253 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEEEECCC
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEEEeecC
Confidence 7777664 44555577655688888542 22222 12346789998888775 44455444488899876543221110
Q ss_pred ccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee-------
Q 012007 202 GSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN------- 274 (473)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~------- 274 (473)
...+.. -....|.++...++|. |..|+.+ -|.+||..+++......
T Consensus 254 ~~~~~~-------------------------l~~~~i~~i~~d~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~ 306 (795)
T 4a2l_A 254 PSNPKS-------------------------ISSNYIRSLAMDSQNR-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGS 306 (795)
T ss_dssp TTCTTS-------------------------CSCSBEEEEEECTTSC-EEEEESS-CEEEEETTTTEEEEECCCTTSTTS
T ss_pred CCCccc-------------------------cCCCeEEEEEEcCCCC-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCC
Confidence 000000 0245689999988876 4455555 58999988776543321
Q ss_pred cCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeee---eccCCccEEEEEEccCCCEEEEeCCCCcEEEE
Q 012007 275 AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQV---LLKHENAVTALAVNQESAVVYCGSSDGLVNFW 351 (473)
Q Consensus 275 ~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iw 351 (473)
.....|.++...+++.|..|+.++-|..|+...... ...... ..-....|.++...++|.+. .|+.++-|..|
T Consensus 307 l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~---~~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~ 382 (795)
T 4a2l_A 307 LSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRF---KNIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLY 382 (795)
T ss_dssp CSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSS---EEECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEE
T ss_pred CCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccc---eEEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEE
Confidence 123579999999999889999988999998753211 000000 01124569999998888744 57777779999
Q ss_pred ecCCcccccceee-------cCcceEEEEEec--CCEEEEEeCCCcEEEEecCCCCceeEEEEec--CCCCceeEEEEec
Q 012007 352 ECEKHLSHGGVLR-------GHKMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHSCLAVLT--GHTGPVKCLAVEE 420 (473)
Q Consensus 352 d~~~~~~~~~~~~-------~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~V~~l~~~~ 420 (473)
|..+......... -....|.++..+ +++|..|+.++.|.+||..++. ...+.... .....|.++...+
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~-~~~~~~~~~~l~~~~v~~i~~d~ 461 (795)
T 4a2l_A 383 NPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ-VENFNQRNSQLVNENVYAILPDG 461 (795)
T ss_dssp CTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC-EEEECTTTSCCSCSCEEEEEECS
T ss_pred cCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc-EEEeecCCCCcCCCeeEEEEECC
Confidence 9775322111000 113457777654 5558888887889999988732 11111000 1345788998888
Q ss_pred CCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 421 DRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
++. |..|+.+ .|.+|+...+
T Consensus 462 ~g~--------------lwigt~~-Gl~~~~~~~~ 481 (795)
T 4a2l_A 462 EGN--------------LWLGTLS-ALVRFNPEQR 481 (795)
T ss_dssp SSC--------------EEEEESS-CEEEEETTTT
T ss_pred CCC--------------EEEEecC-ceeEEeCCCC
Confidence 776 3444444 4888887653
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.8e-06 Score=79.61 Aligned_cols=256 Identities=13% Similarity=0.060 Sum_probs=138.4
Q ss_pred cEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEE
Q 012007 163 LVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS 242 (473)
Q Consensus 163 ~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 242 (473)
...+++|.+++++++++..++.|..|+..++............. .. ..... ...........+..++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~----~~~g~--------~~~~~~~~~~~p~gi~ 86 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWN-KA----FCENS--------TDAEKRPLCGRTYDIS 86 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCC-HH----HHTTC--------CCGGGHHHHCCEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEeccccccc-cc----ccccc--------cchhccccCCCCceEE
Confidence 45678899999878888889999999887654322111000000 00 00000 0000000123577899
Q ss_pred EcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec-----CCCceeEEEEcC-CCEEEEEeC------------------CC
Q 012007 243 LNAEQGLLYSGSWDKTLKVWRISDCKCLESINA-----HDDAINSVVAGF-DSLVFTGSA------------------DG 298 (473)
Q Consensus 243 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-----~~~~v~~l~~~~-~~~l~s~~~------------------dg 298 (473)
+.++...|+++...+.|..+|..+++. ..+.. .....+.+++.+ ++.++.+.. ++
T Consensus 87 ~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g 165 (322)
T 2fp8_A 87 YNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTG 165 (322)
T ss_dssp EETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred EcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCc
Confidence 997444566666556688888765532 22211 113467889998 885554432 25
Q ss_pred cEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe-CCCCcEEEEecCCccccc-ceeecCc-ceEEEEEe
Q 012007 299 TVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG-SSDGLVNFWECEKHLSHG-GVLRGHK-MAVLCLAA 375 (473)
Q Consensus 299 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~-~~~~~~~-~~v~~~~~ 375 (473)
.|..||...+. .. ...........|++++++++|+.+ ..++.|.+|++.....-. ..+.... ..-+++..
T Consensus 166 ~v~~~d~~~~~---~~----~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~gP~gi~~d~ 238 (322)
T 2fp8_A 166 RLIKYDPSTKE---TT----LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNPGNIKRNA 238 (322)
T ss_dssp EEEEEETTTTE---EE----EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSSEEEEEECT
T ss_pred eEEEEeCCCCE---EE----EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCCCCCeEECC
Confidence 67777764221 01 111111234679999999866555 566899999987522110 1111111 12244556
Q ss_pred cCCEEEEEeC----------CCcEEEEecCCCCceeEEEEecCC----CCceeEEEEecCCCCCcccccCCCccEEEEEe
Q 012007 376 AGNLVFSGSA----------DRNICLWRREESGAHSCLAVLTGH----TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG 441 (473)
Q Consensus 376 ~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~h----~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~ 441 (473)
+|++.++... .+.|..+|... +.+..+... ...++++++. ++. ++++.
T Consensus 239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G----~~~~~~~~~~g~~~~~~~~~~~~-~g~-------------L~v~~ 300 (322)
T 2fp8_A 239 DGHFWVSSSEELDGNMHGRVDPKGIKFDEFG----NILEVIPLPPPFAGEHFEQIQEH-DGL-------------LYIGT 300 (322)
T ss_dssp TSCEEEEEEEETTSSTTSCEEEEEEEECTTS----CEEEEEECCTTTTTSCCCEEEEE-TTE-------------EEEEC
T ss_pred CCCEEEEecCcccccccCCCccEEEEECCCC----CEEEEEECCCCCccccceEEEEe-CCE-------------EEEee
Confidence 6876666544 45677787643 334333322 2356777763 444 66666
Q ss_pred eCCCcEEEEEcCCCCC
Q 012007 442 SLDKSVKVWRVSEHAP 457 (473)
Q Consensus 442 s~Dg~v~iW~i~~~~~ 457 (473)
...+.|.++++.....
T Consensus 301 ~~~~~i~~~~~~~~~~ 316 (322)
T 2fp8_A 301 LFHGSVGILVYDKKGN 316 (322)
T ss_dssp SSCSEEEEEEC-----
T ss_pred cCCCceEEEecccccC
Confidence 6788999999875443
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.3e-06 Score=75.48 Aligned_cols=200 Identities=8% Similarity=-0.003 Sum_probs=127.7
Q ss_pred eccC--CeeEEEEcCCCCEEEEEe-C--CCCEEEEEcCCCeeeEEeecCCC-ceeEEEEcCCCEEEEEeCCCcEEEEeCc
Q 012007 233 RHYD--AVSCLSLNAEQGLLYSGS-W--DKTLKVWRISDCKCLESINAHDD-AINSVVAGFDSLVFTGSADGTVKVWRRE 306 (473)
Q Consensus 233 ~~~~--~v~~l~~~~~~~~l~s~s-~--dg~v~vwd~~~~~~~~~~~~~~~-~v~~l~~~~~~~l~s~~~dg~i~vwd~~ 306 (473)
.|.. ....+.|++++ .|+.++ . ++.|.++|+.+++.+..+..... ....+++..+.+.++.-.++.+.++|..
T Consensus 16 p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~ 94 (266)
T 2iwa_A 16 PHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRR 94 (266)
T ss_dssp ECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETT
T ss_pred ECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECC
Confidence 3543 35799999986 555554 2 57899999999999988763222 2345666544455556678999999986
Q ss_pred ccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCc-c---eEEEEEe-cCCEEE
Q 012007 307 LQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHK-M---AVLCLAA-AGNLVF 381 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~---~v~~~~~-~~~~l~ 381 (473)
+.. . ...+...... ...+.++++.++++..++.|.++|..+......+..+.. . ....+.+ ++.+.+
T Consensus 95 t~~-----v-~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyv 166 (266)
T 2iwa_A 95 TLS-----N-IKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWA 166 (266)
T ss_dssp TTE-----E-EEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEE
T ss_pred CCc-----E-EEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEE
Confidence 322 1 2222111111 233556777777777789999999987654443332211 1 1223333 564444
Q ss_pred EEeCCCcEEEEecCCCCceeEEEEecCC-------------CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEE
Q 012007 382 SGSADRNICLWRREESGAHSCLAVLTGH-------------TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVK 448 (473)
Q Consensus 382 s~~~dg~i~iwd~~~~~~~~~~~~~~~h-------------~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~ 448 (473)
....++.|.+.|..++ +.+..+.-. ....+.|+|+|+++. +++++...+.|.
T Consensus 167 n~~~~~~V~vID~~tg---~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~------------lfVTgk~~~~v~ 231 (266)
T 2iwa_A 167 NIWQTDCIARISAKDG---TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKR------------IFVTGKLWPKLF 231 (266)
T ss_dssp EETTSSEEEEEETTTC---CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTE------------EEEEETTCSEEE
T ss_pred ecCCCCeEEEEECCCC---cEEEEEECCCcccccccccccccCceEEEEEcCCCCE------------EEEECCCCCeEE
Confidence 4446789999999984 444444321 135689999999874 788888899999
Q ss_pred EEEcCCCC
Q 012007 449 VWRVSEHA 456 (473)
Q Consensus 449 iW~i~~~~ 456 (473)
+-++....
T Consensus 232 ~i~l~~~~ 239 (266)
T 2iwa_A 232 EIKLHLVR 239 (266)
T ss_dssp EEEEEECC
T ss_pred EEEEeccc
Confidence 99987754
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.70 E-value=9.1e-07 Score=90.04 Aligned_cols=267 Identities=11% Similarity=0.054 Sum_probs=143.4
Q ss_pred EEEe-cCCEEEEeeCCC-----------cEEEeeCCcc----cccc-ccCcccEEEEEEeCCCCEEEEEeC-CCeEEEEe
Q 012007 128 SLAA-SGDLLYTGSDSK-----------NIRVWKNLKE----FSGF-KSNSGLVKAIIISGDSNKIFTGHQ-DGKIRIWK 189 (473)
Q Consensus 128 ~~~~-~g~~l~tg~~dg-----------~i~vwd~~~~----~~~~-~~h~~~V~~l~~s~~~~~l~s~~~-dg~i~vwd 189 (473)
++.+ +|++++.|+.+. .+.+||.... +..+ ..+.....++++..++++++.|+. +..+.+||
T Consensus 192 av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd 271 (656)
T 1k3i_A 192 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD 271 (656)
T ss_dssp EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred EEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEec
Confidence 4555 788888887643 5788886522 1112 113334456778889999999884 45799999
Q ss_pred CCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-CC-----CCEEEEE
Q 012007 190 VSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-WD-----KTLKVWR 263 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~d-----g~v~vwd 263 (473)
..+...... ...+ ....-.+++..+++++++.|+ .+ ..+.+||
T Consensus 272 ~~t~~W~~~---~~~~----------------------------~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd 320 (656)
T 1k3i_A 272 SSSDSWIPG---PDMQ----------------------------VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS 320 (656)
T ss_dssp GGGTEEEEC---CCCS----------------------------SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred CcCCceeEC---CCCC----------------------------ccccccceEEecCCeEEEEeCcccCCcccccceEeC
Confidence 876643221 1111 111223455667889999988 44 5699999
Q ss_pred cCCCeeeEEe-----ecCCCceeEEEEcCCC-EEEEEeCC---------CcEEEEeCcccCCCcceeeeeeecc------
Q 012007 264 ISDCKCLESI-----NAHDDAINSVVAGFDS-LVFTGSAD---------GTVKVWRRELQGKGTKHCLAQVLLK------ 322 (473)
Q Consensus 264 ~~~~~~~~~~-----~~~~~~v~~l~~~~~~-~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~------ 322 (473)
..+.+-...- ......-.+ .+..++ .++.|+.+ ..+..||.....- .........
T Consensus 321 ~~t~~W~~~~~~~~~p~~~~~~~~-~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w---~~~~~~~~~~~~~~~ 396 (656)
T 1k3i_A 321 PSSKTWTSLPNAKVNPMLTADKQG-LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD---VKSAGKRQSNRGVAP 396 (656)
T ss_dssp TTTTEEEEETTSCSGGGCCCCTTG-GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE---EEEEEECEETTEECC
T ss_pred CCCCcceeCCCccccccccccccc-eeecCCceEEEECCCCcEEEecCccceeeeecCCcce---eecCCccccccccCC
Confidence 9876543220 000000000 111222 33444444 3567788764221 111111100
Q ss_pred CCccEEEEEEcc-CCCEEEEeCCCC-----------cEEEEecCCcccccc---eee-cCcceEEEEEecCCEEEEEeCC
Q 012007 323 HENAVTALAVNQ-ESAVVYCGSSDG-----------LVNFWECEKHLSHGG---VLR-GHKMAVLCLAAAGNLVFSGSAD 386 (473)
Q Consensus 323 ~~~~v~~l~~~~-~~~~l~~~~~dg-----------~i~iwd~~~~~~~~~---~~~-~~~~~v~~~~~~~~~l~s~~~d 386 (473)
....-.++.|.. +++++++|+.++ .|.+||..+..-... .+. .......++.+++++++.|+.+
T Consensus 397 ~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 397 DAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp CCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred CCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence 111234455543 678888887543 677888765322110 111 1112223444689999999865
Q ss_pred -----------CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeC
Q 012007 387 -----------RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSL 443 (473)
Q Consensus 387 -----------g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~ 443 (473)
..+.+||..+ ..+..+..+........+..+.++++ +++.||.
T Consensus 477 ~~~~~~~~~~~~~v~~ydp~t-~~W~~~~~~~~~R~~hs~a~ll~dg~-------------v~v~GG~ 530 (656)
T 1k3i_A 477 RGIPFEDSTPVFTPEIYVPEQ-DTFYKQNPNSIVRVYHSISLLLPDGR-------------VFNGGGG 530 (656)
T ss_dssp BCCTTCCCSBCCCCEEEEGGG-TEEEECCCCSSCCCTTEEEEECTTSC-------------EEEEECC
T ss_pred cCcCcCCCCcccceEEEcCCC-CceeecCCCCCccccccHhhcCCCcE-------------EEecCCC
Confidence 4689999877 33443333322222233455668887 8888885
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.68 E-value=4.2e-06 Score=81.50 Aligned_cols=216 Identities=10% Similarity=0.121 Sum_probs=135.9
Q ss_pred CCCEEEEEeC-CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEE-c-CCCC
Q 012007 172 DSNKIFTGHQ-DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL-N-AEQG 248 (473)
Q Consensus 172 ~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~-~~~~ 248 (473)
||++|+.+.. ++.|.+.|+.+.+......+. .......+++ . |+++
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip-------------------------------~g~~phg~~~~~~p~~~ 148 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIP-------------------------------NAKGIHGLRPQKWPRSN 148 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECS-------------------------------SCCSEEEEEECCSSBCS
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCC-------------------------------CCCCCcceeeeecCCCc
Confidence 8888888766 457999999998765544332 2344667777 4 8999
Q ss_pred EEEEEe------------------CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCC-----------
Q 012007 249 LLYSGS------------------WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADG----------- 298 (473)
Q Consensus 249 ~l~s~s------------------~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg----------- 298 (473)
++++++ .++.+.++|..+.+.+..+.... ....+++++++ ++++.+.+.
T Consensus 149 ~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~ 227 (595)
T 1fwx_A 149 YVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTA 227 (595)
T ss_dssp EEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTC
T ss_pred EEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccc
Confidence 998885 24579999999999888887433 34667788887 666655442
Q ss_pred ---------------------------cEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC-CCCcEEE
Q 012007 299 ---------------------------TVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS-SDGLVNF 350 (473)
Q Consensus 299 ---------------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~i 350 (473)
.|.+.|.+... .......+ .-.....++.++|||+++++++ .+..|.+
T Consensus 228 ~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~---~~~~~~~I-pvg~~PhGv~~sPDGk~v~V~~~~s~~VsV 303 (595)
T 1fwx_A 228 AEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEA---SSLFTRYI-PIANNPHGCNMAPDKKHLCVAGKLSPTVTV 303 (595)
T ss_dssp CSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGG---CCSSEEEE-EEESSCCCEEECTTSSEEEEECTTSSBEEE
T ss_pred cccceEEEeeccceeEeccCCCeeEECcEEEEeCcccC---CceeEEEE-ecCCCceEEEEcCCCCEEEEeCCCCCeEEE
Confidence 24444443210 00001111 1122446789999999876655 5789999
Q ss_pred EecCCcc------------cccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCC-------CceeEEEEecCCCC
Q 012007 351 WECEKHL------------SHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREES-------GAHSCLAVLTGHTG 411 (473)
Q Consensus 351 wd~~~~~------------~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~h~~ 411 (473)
+|+.+.. .......+-.-.-+.|+++|...++...|+.|.+||+... ...+.+..+..|-.
T Consensus 304 id~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yq 383 (595)
T 1fwx_A 304 LDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ 383 (595)
T ss_dssp EEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC
T ss_pred EECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccc
Confidence 9998642 1112233334445678888955556678999999998751 12356666666543
Q ss_pred ce-----eEEEEecCCC
Q 012007 412 PV-----KCLAVEEDRD 423 (473)
Q Consensus 412 ~V-----~~l~~~~~~~ 423 (473)
+- .++.++||++
T Consensus 384 pGh~~~~~g~t~~~DGk 400 (595)
T 1fwx_A 384 PGHLKTVMGETLDATND 400 (595)
T ss_dssp EEEEEETTTTSTTCCSS
T ss_pred cccceeccceEeCCCCC
Confidence 32 2223456665
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-05 Score=77.74 Aligned_cols=270 Identities=12% Similarity=0.008 Sum_probs=148.5
Q ss_pred EEEEe-----cCCEEEEeeC-CCcEEEeeCCc--cccccc-cCcccEEEEEE-e-CCCCEEEEEe---------------
Q 012007 127 YSLAA-----SGDLLYTGSD-SKNIRVWKNLK--EFSGFK-SNSGLVKAIII-S-GDSNKIFTGH--------------- 180 (473)
Q Consensus 127 ~~~~~-----~g~~l~tg~~-dg~i~vwd~~~--~~~~~~-~h~~~V~~l~~-s-~~~~~l~s~~--------------- 180 (473)
..+++ ||++|+.... ++.|.+.|+.. ....+. ........+++ + |++.++++++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~ 169 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED 169 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccc
Confidence 55665 7888777765 55688988663 233222 12345788888 5 9999999885
Q ss_pred ---CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceE-EEeecceeeEee-----ccCCeeEE------EEcC
Q 012007 181 ---QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYV-EVRRNRSVLKIR-----HYDAVSCL------SLNA 245 (473)
Q Consensus 181 ---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~v~~l------~~~~ 245 (473)
.++.+.+.|.++.+...+..+...+.. +....+..... ..........+. -.+.|.-+ .+.+
T Consensus 170 ~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~---~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~ 246 (595)
T 1fwx_A 170 VANYVNVFTAVDADKWEVAWQVLVSGNLDN---CDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA 246 (595)
T ss_dssp GGGEEEEEEEEETTTTEEEEEEEESSCCCC---EEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred ccccCceEEEEECCCCeEEEEEEeCCCccc---eEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence 245789999998877666665432211 11111111000 000000000000 00000000 0122
Q ss_pred CCCEEEEEeCCCCEEEEEcCC--Cee-eEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccC-----CC-cce
Q 012007 246 EQGLLYSGSWDKTLKVWRISD--CKC-LESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQG-----KG-TKH 314 (473)
Q Consensus 246 ~~~~l~s~s~dg~v~vwd~~~--~~~-~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~-----~~-~~~ 314 (473)
+|+++.. +.|.|.|..+ ++. +..+.. .....++.++||+ .++++..+.+|.++|+.... +. ...
T Consensus 247 ~Gk~~~i----~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~ 321 (595)
T 1fwx_A 247 AGDYQEL----NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS 321 (595)
T ss_dssp HTCSEEE----TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred CCCeeEE----CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence 3333322 3588888887 544 455543 2356788999999 45566678999999997321 00 001
Q ss_pred eeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCc---------ccccceeecCcceE-E------EEEecCC
Q 012007 315 CLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH---------LSHGGVLRGHKMAV-L------CLAAAGN 378 (473)
Q Consensus 315 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~~~~~~v-~------~~~~~~~ 378 (473)
..... ..-......++|+++|....+...|+.|.+||+.+. ......+.-|-.+- . .+++||+
T Consensus 322 ~v~~~-v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk 400 (595)
T 1fwx_A 322 AVVAE-PELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATND 400 (595)
T ss_dssp GEEEC-CBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSS
T ss_pred ceEEE-cCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCC
Confidence 11112 223356788999999955556778999999998762 12222333332211 2 2357899
Q ss_pred EEEEEeC---CCc----------EEEEecCCCCceeEEEEe
Q 012007 379 LVFSGSA---DRN----------ICLWRREESGAHSCLAVL 406 (473)
Q Consensus 379 ~l~s~~~---dg~----------i~iwd~~~~~~~~~~~~~ 406 (473)
+|+++.. |+. -.++|+.. +..+++...
T Consensus 401 ~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~-~~m~lv~d~ 440 (595)
T 1fwx_A 401 WLVCLSKFSKDRFLNVGPLKPENDQLIDISG-DKMVLVHDG 440 (595)
T ss_dssp EEEEEESCCTTSSCCCCSSCCEEEEEEECSS-SSCEEEEEE
T ss_pred EEEEcCCCCccccccCCCCCCCcceEEEcCC-CcEEEEEEE
Confidence 9998753 432 28899954 344455443
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.67 E-value=5.8e-05 Score=78.51 Aligned_cols=280 Identities=9% Similarity=0.074 Sum_probs=165.3
Q ss_pred ccEEEEEec-CCEEEEeeCCCcEEEeeCCcc-cccc---------------ccCcccEEEEEEeCCCCEEEEEeCCCeEE
Q 012007 124 GHIYSLAAS-GDLLYTGSDSKNIRVWKNLKE-FSGF---------------KSNSGLVKAIIISGDSNKIFTGHQDGKIR 186 (473)
Q Consensus 124 ~~V~~~~~~-g~~l~tg~~dg~i~vwd~~~~-~~~~---------------~~h~~~V~~l~~s~~~~~l~s~~~dg~i~ 186 (473)
..|.++..+ ...|..|+..+-|.++|.... +..+ ......|.+|....+|. |..|..++-|.
T Consensus 258 ~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~ 336 (781)
T 3v9f_A 258 SYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGIN 336 (781)
T ss_dssp CCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEE
T ss_pred ceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEE
Confidence 458888876 446777777556778875422 1111 11346799999988885 66677677788
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD 266 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~ 266 (473)
.++................... .-....|.++...+++. |..|+.++-|..||..+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~-----------------------~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~ 392 (781)
T 3v9f_A 337 FISNAPPTFHTWSYSPTQMNES-----------------------SLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGK 392 (781)
T ss_dssp EECSSCCSCEEEC----CCCSS-----------------------CCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTE
T ss_pred EeCCCCCcceeeccCccccccC-----------------------CCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCC
Confidence 8987765432211100000000 00345688998887765 56677667799999865
Q ss_pred CeeeEEe---ecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeee--ccCCccEEEEEEccCCCEEEE
Q 012007 267 CKCLESI---NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVL--LKHENAVTALAVNQESAVVYC 341 (473)
Q Consensus 267 ~~~~~~~---~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~l~~ 341 (473)
++..... ......|.++...+++.|..|+.++-|..+|...+. ..... ......|.++...+++.+.+
T Consensus 393 ~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~------~~~~~~~~~~~~~v~~i~~d~~g~lwi- 465 (781)
T 3v9f_A 393 RVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKK------FQIIELEKNELLDVRVFYEDKNKKIWI- 465 (781)
T ss_dssp EEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCE------EEECCSTTTCCCCEEEEEECTTSEEEE-
T ss_pred CeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCc------EEEeccCCCCCCeEEEEEECCCCCEEE-
Confidence 5432211 123467889988888888888887888899875321 11111 12346789999888877554
Q ss_pred eCCCCcEEEEecCCcccccceeecC-----cceEEEEEec-CCEEEEEeCCCcEEEEecCCCCceeEEEEecC----CCC
Q 012007 342 GSSDGLVNFWECEKHLSHGGVLRGH-----KMAVLCLAAA-GNLVFSGSADRNICLWRREESGAHSCLAVLTG----HTG 411 (473)
Q Consensus 342 ~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----h~~ 411 (473)
|+. +-|..||..+.... ...... ...+.++..+ ...|..|+.++-|..||..+. . +..+.. ...
T Consensus 466 gt~-~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~---~-~~~~~~~~~l~~~ 539 (781)
T 3v9f_A 466 GTH-AGVFVIDLASKKVI-HHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQ---L-VRKFNQYEGFCSN 539 (781)
T ss_dssp EET-TEEEEEESSSSSCC-EEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCC---E-EEEECTTTTCSCS
T ss_pred EEC-CceEEEeCCCCeEE-ecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCC---e-EEEccCCCCCCCC
Confidence 444 45888987754321 111111 3467777665 334556665455888887662 2 222221 234
Q ss_pred ceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 412 PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 412 ~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
.|.++...+++. +. .|+.+|-|..|+....
T Consensus 540 ~i~~i~~d~~g~-------------lW-i~T~~Glv~~~d~~~~ 569 (781)
T 3v9f_A 540 TINQIYRSSKGQ-------------MW-LATGEGLVCFPSARNF 569 (781)
T ss_dssp CEEEEEECTTSC-------------EE-EEETTEEEEESCTTTC
T ss_pred eeEEEEECCCCC-------------EE-EEECCCceEEECCCCC
Confidence 688888888876 34 3444665477776544
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=9.3e-06 Score=82.54 Aligned_cols=267 Identities=15% Similarity=0.156 Sum_probs=146.3
Q ss_pred cCCEEEEeeCCCcEEEeeCC--ccccccccC----cccEEE-EEEeCCCCEEEEEeC------CCeEEEEeCCCCCeeeE
Q 012007 132 SGDLLYTGSDSKNIRVWKNL--KEFSGFKSN----SGLVKA-IIISGDSNKIFTGHQ------DGKIRIWKVSRKNASVH 198 (473)
Q Consensus 132 ~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h----~~~V~~-l~~s~~~~~l~s~~~------dg~i~vwd~~~~~~~~~ 198 (473)
.+..++.++.|+.|..+|.. +.+-.+... ...+.+ -.+. ++ .++.+.. +|.|..+|..+++..-.
T Consensus 116 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 116 WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 45678888888999999854 222222111 011111 1111 34 5555543 58999999999988766
Q ss_pred Eeecc-ccccc---eeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCC-----------------
Q 012007 199 KRVGS-LPTFK---DYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDK----------------- 257 (473)
Q Consensus 199 ~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg----------------- 257 (473)
..... .+... ..+..... .. .........++......++++++..+++.+..++
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~---~~--~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~ 268 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAK---TW--QGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLY 268 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHT---TC--CSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred ecccCCCCCccccccccccccc---cC--CccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCcee
Confidence 55321 11000 00000000 00 0000000001223334578888888999888766
Q ss_pred --CEEEEEcCCCeeeEEeec--CC-------CceeEEEEcCCC----EEEEEeCCCcEEEEeCcccCCCcceeee-----
Q 012007 258 --TLKVWRISDCKCLESINA--HD-------DAINSVVAGFDS----LVFTGSADGTVKVWRRELQGKGTKHCLA----- 317 (473)
Q Consensus 258 --~v~vwd~~~~~~~~~~~~--~~-------~~v~~l~~~~~~----~l~s~~~dg~i~vwd~~~~~~~~~~~~~----- 317 (473)
.|..+|..+|+.+..++. |. .+.....+..++ .++.++.+|.+.++|.++++........
T Consensus 269 ~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~ 348 (668)
T 1kv9_A 269 LSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWA 348 (668)
T ss_dssp TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSE
T ss_pred eeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccc
Confidence 399999999999888764 22 122222222244 5888999999999998765421000000
Q ss_pred eeec-cCCcc------------------------EEEEEEccCCCEEEEe------------------------------
Q 012007 318 QVLL-KHENA------------------------VTALAVNQESAVVYCG------------------------------ 342 (473)
Q Consensus 318 ~~~~-~~~~~------------------------v~~l~~~~~~~~l~~~------------------------------ 342 (473)
..+. ....+ -..++++|+..++++.
T Consensus 349 ~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 428 (668)
T 1kv9_A 349 EKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADA 428 (668)
T ss_dssp EEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGC
T ss_pred cccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcccccc
Confidence 0000 00000 0126777776666541
Q ss_pred ------CCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecC
Q 012007 343 ------SSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTG 408 (473)
Q Consensus 343 ------~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 408 (473)
..+|.|..||+.+++..-....+.......+...+.+++.++.|+.|+.||..++ +.+..+..
T Consensus 429 ~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG---~~l~~~~~ 497 (668)
T 1kv9_A 429 TDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKG---EALWQFEA 497 (668)
T ss_dssp CCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC---CEEEEEEC
T ss_pred CCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcC---hhheEecC
Confidence 1347899999988765433322222222356667899999999999999999984 55555443
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.7e-05 Score=72.86 Aligned_cols=231 Identities=10% Similarity=0.017 Sum_probs=132.0
Q ss_pred EEecCCEEEEeeCCCcEEEeeCCc-ccccccc--------------------CcccEEEEEEeC-CCCEEEEEeCCCeEE
Q 012007 129 LAASGDLLYTGSDSKNIRVWKNLK-EFSGFKS--------------------NSGLVKAIIISG-DSNKIFTGHQDGKIR 186 (473)
Q Consensus 129 ~~~~g~~l~tg~~dg~i~vwd~~~-~~~~~~~--------------------h~~~V~~l~~s~-~~~~l~s~~~dg~i~ 186 (473)
+.++|++++++..++.|..|+... .+..+.. ....+..|++.+ ++ .|+.+...+.|.
T Consensus 26 ~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v~d~~~~i~ 104 (322)
T 2fp8_A 26 FDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYIVDCYYHLS 104 (322)
T ss_dssp CCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEEEETTTEEE
T ss_pred EcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEEEECCCCEE
Confidence 344577778888888899997653 2322210 123578999997 55 566665556688
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeC----------
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSW---------- 255 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~---------- 255 (473)
.+|..++......... .. ........+++.+ +|++.++-..
T Consensus 105 ~~d~~~g~~~~~~~~~--~~--------------------------~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~ 156 (322)
T 2fp8_A 105 VVGSEGGHATQLATSV--DG--------------------------VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQ 156 (322)
T ss_dssp EECTTCEECEEEESEE--TT--------------------------EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHH
T ss_pred EEeCCCCEEEEecccC--CC--------------------------CcccccceEEEecCCCEEEEECCcccccccccce
Confidence 8887654321111000 00 0123467799999 8876665432
Q ss_pred -------CCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEE-eCCCcEEEEeCcccCCCcceeeeeeeccCCcc
Q 012007 256 -------DKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTG-SADGTVKVWRRELQGKGTKHCLAQVLLKHENA 326 (473)
Q Consensus 256 -------dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
++.|..||..+++...... .....+.+++++++ .|+.+ ...+.|.+|++........ ..... ...
T Consensus 157 ~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~-~~~~~---~~g- 230 (322)
T 2fp8_A 157 IMDTSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTA-EVLVK---IPN- 230 (322)
T ss_dssp HHHHTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCE-EEEEE---CSS-
T ss_pred ehcccCCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCcc-ceEEe---CCC-
Confidence 3678889987776433222 22345678999987 45544 5678999999863221111 11111 123
Q ss_pred EEEEEEccCCCEEEEeCC----------CCcEEEEecCCcccccceeecC----cceEEEEE-ecCCEEEEEeCCCcEEE
Q 012007 327 VTALAVNQESAVVYCGSS----------DGLVNFWECEKHLSHGGVLRGH----KMAVLCLA-AAGNLVFSGSADRNICL 391 (473)
Q Consensus 327 v~~l~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~----~~~v~~~~-~~~~~l~s~~~dg~i~i 391 (473)
...+++.++|++.++... .+.|..+|... ... ..+... ...+.++. .++.++++...++.|.+
T Consensus 231 P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G-~~~-~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~ 308 (322)
T 2fp8_A 231 PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFG-NIL-EVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGI 308 (322)
T ss_dssp EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTS-CEE-EEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEE
T ss_pred CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCC-CEE-EEEECCCCCccccceEEEEeCCEEEEeecCCCceEE
Confidence 788999999987666543 46688888653 222 122111 11233333 34555555556788999
Q ss_pred EecCC
Q 012007 392 WRREE 396 (473)
Q Consensus 392 wd~~~ 396 (473)
+++..
T Consensus 309 ~~~~~ 313 (322)
T 2fp8_A 309 LVYDK 313 (322)
T ss_dssp EEC--
T ss_pred Eeccc
Confidence 98765
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=5.4e-06 Score=84.30 Aligned_cols=238 Identities=11% Similarity=0.139 Sum_probs=137.2
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEE
Q 012007 173 SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYS 252 (473)
Q Consensus 173 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s 252 (473)
+..|+.++.|+.|..+|..+++..-............ ....++ + .+..+++
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~-----------------------~~~~P~--v----~~~~v~v 167 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYS-----------------------ITGAPR--V----VKGKVII 167 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCB-----------------------CCSCCE--E----ETTEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcce-----------------------ecCCCE--E----ECCEEEE
Confidence 4588888999999999999998776654321100000 001111 1 1335555
Q ss_pred EeC------CCCEEEEEcCCCeeeEEeecCC-C------------------------------ceeEEEEcCC-CEEEEE
Q 012007 253 GSW------DKTLKVWRISDCKCLESINAHD-D------------------------------AINSVVAGFD-SLVFTG 294 (473)
Q Consensus 253 ~s~------dg~v~vwd~~~~~~~~~~~~~~-~------------------------------~v~~l~~~~~-~~l~s~ 294 (473)
+.. +|.|..+|.++|+.+..+.... . ....+++.++ ++++.+
T Consensus 168 g~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~ 247 (668)
T 1kv9_A 168 GNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVG 247 (668)
T ss_dssp CCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEE
T ss_pred eCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEe
Confidence 543 5889999999999988775311 0 0113466654 477777
Q ss_pred eCCCc-------------------EEEEeCcccCCCcceeeeeeeccCC-------ccEEEEEEccCCC---EEEEeCCC
Q 012007 295 SADGT-------------------VKVWRRELQGKGTKHCLAQVLLKHE-------NAVTALAVNQESA---VVYCGSSD 345 (473)
Q Consensus 295 ~~dg~-------------------i~vwd~~~~~~~~~~~~~~~~~~~~-------~~v~~l~~~~~~~---~l~~~~~d 345 (473)
+.++. |..+|.++++. .... ....|. .+.....+..+++ .++.++.+
T Consensus 248 ~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~--~W~~--~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~ 323 (668)
T 1kv9_A 248 TGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL--AWHY--QVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKN 323 (668)
T ss_dssp CCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE--EEEE--ESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTT
T ss_pred CCCCCccccCCCCCCCCCceeeeeEEEEcCCCCce--eeEe--ecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCC
Confidence 77663 88888875432 1111 111121 2233233334564 68899999
Q ss_pred CcEEEEecCCcccccceeec-------------------------------------CcceEEEEEecCCEEEEE-----
Q 012007 346 GLVNFWECEKHLSHGGVLRG-------------------------------------HKMAVLCLAAAGNLVFSG----- 383 (473)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~~-------------------------------------~~~~v~~~~~~~~~l~s~----- 383 (473)
|.++++|.++++.+...... +.-...+++++..+++..
T Consensus 324 G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~ 403 (668)
T 1kv9_A 324 GFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVP 403 (668)
T ss_dssp SEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECC
T ss_pred CEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccc
Confidence 99999998876544111000 000013455554554431
Q ss_pred -------------------------------eCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCC
Q 012007 384 -------------------------------SADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKG 432 (473)
Q Consensus 384 -------------------------------~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~ 432 (473)
..+|.|..||+.++ +.+.....+ .++....+...+.
T Consensus 404 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG---~~~W~~~~~-~~~~~~~~~t~gg--------- 470 (668)
T 1kv9_A 404 GVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQ---KAAWKVPYP-THWNGGTLSTAGN--------- 470 (668)
T ss_dssp EEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTT---EEEEEEEES-SSCCCCEEEETTT---------
T ss_pred eEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCC---cEEEEccCC-CCCcCceeEeCCC---------
Confidence 13478999999884 333333322 2233333444444
Q ss_pred CccEEEEEeeCCCcEEEEEcCCCCCCcc
Q 012007 433 DQRWTVYSGSLDKSVKVWRVSEHAPDLK 460 (473)
Q Consensus 433 ~~~~~l~s~s~Dg~v~iW~i~~~~~~~~ 460 (473)
+++.++.||.|++||..+++...+
T Consensus 471 ----~vf~g~~dg~l~a~d~~tG~~l~~ 494 (668)
T 1kv9_A 471 ----LVFQGTAAGQMHAYSADKGEALWQ 494 (668)
T ss_dssp ----EEEEECTTSEEEEEETTTCCEEEE
T ss_pred ----EEEEECCcccchhhhhhcChhheE
Confidence 788899999999999998876544
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.61 E-value=0.00014 Score=75.64 Aligned_cols=290 Identities=10% Similarity=0.144 Sum_probs=165.3
Q ss_pred ccEEEEEec-CCEEEEeeCCCcEEEeeCCc-cccccc--------cCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Q 012007 124 GHIYSLAAS-GDLLYTGSDSKNIRVWKNLK-EFSGFK--------SNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRK 193 (473)
Q Consensus 124 ~~V~~~~~~-g~~l~tg~~dg~i~vwd~~~-~~~~~~--------~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~ 193 (473)
..|.++..+ ...|..|+.+ -+.+||... .+..+. .....|.+|....+|. |..|...+-|.++|..+.
T Consensus 211 ~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~ 288 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQN 288 (781)
T ss_dssp SSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC
T ss_pred CceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCC
Confidence 457888776 2345555655 588888542 222221 1245699999988884 555666456888888765
Q ss_pred CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEe
Q 012007 194 NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI 273 (473)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 273 (473)
......... +..+ ....... .-....|.++...++|. |..|+.++-|..++..........
T Consensus 289 ~~~~~~~~~----f~~~-~~~~~~~-------------~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~ 349 (781)
T 3v9f_A 289 QFLLPEQIR----FEFI-REGDNNY-------------SLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWS 349 (781)
T ss_dssp -------------CEEE-CBCSSTT-------------SBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC
T ss_pred eeeeeeccc----cccc-cCCCCCC-------------CCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeec
Confidence 432211100 0000 0000000 00346789999888775 667777788999988755432211
Q ss_pred ---------ecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC
Q 012007 274 ---------NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS 344 (473)
Q Consensus 274 ---------~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~ 344 (473)
......|.++....++.|..|+.++-|..||...... .............|.++...+++.+. +|+.
T Consensus 350 ~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~---~~~~~~~~~~~~~v~~i~~d~~g~lW-igt~ 425 (781)
T 3v9f_A 350 YSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVA---IYNKENRELLSNSVLCSLKDSEGNLW-FGTY 425 (781)
T ss_dssp ----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEE---ECC-----CCCSBEEEEEECTTSCEE-EEET
T ss_pred cCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeE---EEccCCCCCCCcceEEEEECCCCCEE-EEec
Confidence 1123568999988888888888888899998753210 00000011234678999988887755 4666
Q ss_pred CCcEEEEecCCccccccee-ecCcceEEEEEec-CCEEEEEeCCCcEEEEecCCCCceeEEEEec---CCCCceeEEEEe
Q 012007 345 DGLVNFWECEKHLSHGGVL-RGHKMAVLCLAAA-GNLVFSGSADRNICLWRREESGAHSCLAVLT---GHTGPVKCLAVE 419 (473)
Q Consensus 345 dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~h~~~V~~l~~~ 419 (473)
++-|..+|..++....... ......|.++..+ ...|..|+. +.|.+||..+.. ........ .....|.++...
T Consensus 426 ~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~d 503 (781)
T 3v9f_A 426 LGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKK-VIHHYDTSNSQLLENFVRSIAQD 503 (781)
T ss_dssp TEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSS-CCEEECTTTSSCSCSCEEEEEEC
T ss_pred cCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCe-EEecccCcccccccceeEEEEEc
Confidence 6678889876542211110 1133567788776 446666776 568899987632 22222111 113578999888
Q ss_pred cCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 420 EDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
+++. |..|+.++-|..|+...
T Consensus 504 ~~g~--------------lWigt~~~Gl~~~~~~~ 524 (781)
T 3v9f_A 504 SEGR--------------FWIGTFGGGVGIYTPDM 524 (781)
T ss_dssp TTCC--------------EEEEESSSCEEEECTTC
T ss_pred CCCC--------------EEEEEcCCCEEEEeCCC
Confidence 8876 44455434466677543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=8.2e-05 Score=66.25 Aligned_cols=195 Identities=8% Similarity=0.008 Sum_probs=115.6
Q ss_pred CeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC-CEEE-EEeCCCcEEEEeCcccCCCcc
Q 012007 237 AVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVF-TGSADGTVKVWRRELQGKGTK 313 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~-~~l~-s~~~dg~i~vwd~~~~~~~~~ 313 (473)
.+..++|++++..|+.+. .++.|..+++........+.........+++.++ +.++ +-...+.|.++++.... .
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~---~ 113 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ---R 113 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---C
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC---E
Confidence 467899999766666655 5678999998765443333333356788999875 4444 44557889999875211 1
Q ss_pred eeeeeeeccCCccEEEEEEccCCCEEEEeCC---CCcEEEEecCCcccccceeec--CcceEEEEEecCCEEEEE-eCCC
Q 012007 314 HCLAQVLLKHENAVTALAVNQESAVVYCGSS---DGLVNFWECEKHLSHGGVLRG--HKMAVLCLAAAGNLVFSG-SADR 387 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~s~-~~dg 387 (473)
. ............++++|++..|+.+.. .+.|..+++...... ..... ....-+++++++..|+.+ ...+
T Consensus 114 ~---~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~-~~~~~~~~~P~gia~d~~~~~lyv~d~~~~ 189 (267)
T 1npe_A 114 R---VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR-ILAQDNLGLPNGLTFDAFSSQLCWVDAGTH 189 (267)
T ss_dssp E---EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE-EEECTTCSCEEEEEEETTTTEEEEEETTTT
T ss_pred E---EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE-EEEECCCCCCcEEEEcCCCCEEEEEECCCC
Confidence 1 111112245789999997665555443 368888887643211 11111 112235566666655544 4567
Q ss_pred cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 388 NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
.|.+++.... .....+.+- .....++.. .+. ++++....+.|.+++...++
T Consensus 190 ~I~~~~~~g~---~~~~~~~~~-~~P~gi~~d-~~~-------------lyva~~~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 190 RAECLNPAQP---GRRKVLEGL-QYPFAVTSY-GKN-------------LYYTDWKTNSVIAMDLAISK 240 (267)
T ss_dssp EEEEEETTEE---EEEEEEECC-CSEEEEEEE-TTE-------------EEEEETTTTEEEEEETTTTE
T ss_pred EEEEEecCCC---ceEEEecCC-CCceEEEEe-CCE-------------EEEEECCCCeEEEEeCCCCC
Confidence 8999998752 222222222 233566654 222 55555567889999987654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.59 E-value=0.00022 Score=64.84 Aligned_cols=222 Identities=13% Similarity=0.081 Sum_probs=127.0
Q ss_pred ccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE
Q 012007 162 GLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL 241 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 241 (473)
.....++|+++++++++-..++.|..||..... ..... .......+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~~~~---------------------------------~~~~p~gi 77 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QIHAT---------------------------------VEGKVSGL 77 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEEEE---------------------------------CSSEEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EEEEe---------------------------------CCCCceeE
Confidence 346788999998876666678899999876532 11111 22357789
Q ss_pred EEcCCCCEEEEEeCCC--CEEEEEcCCCeeeEEeec-CCCceeEEEEcCCCEEEEEe-CCCcEEEEeCcccCCCcceeee
Q 012007 242 SLNAEQGLLYSGSWDK--TLKVWRISDCKCLESINA-HDDAINSVVAGFDSLVFTGS-ADGTVKVWRRELQGKGTKHCLA 317 (473)
Q Consensus 242 ~~~~~~~~l~s~s~dg--~v~vwd~~~~~~~~~~~~-~~~~v~~l~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~ 317 (473)
++.++++++++..... .|..+|..+++....... .......++..+++.++... .++.|.++|...... .....
T Consensus 78 a~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~--~v~~~ 155 (306)
T 2p4o_A 78 AFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG--SIWLE 155 (306)
T ss_dssp EECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE--EEEEE
T ss_pred EEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE--eEEEE
Confidence 9999998655554332 377778777765433221 22233455555566544444 588888888652100 00000
Q ss_pred ----e--eeccCCccEEEEEEccCCCEEEE-eCCCCcEEEEecCC-ccc-ccceee-cCcceEEEEEecCCEEEEEeCCC
Q 012007 318 ----Q--VLLKHENAVTALAVNQESAVVYC-GSSDGLVNFWECEK-HLS-HGGVLR-GHKMAVLCLAAAGNLVFSGSADR 387 (473)
Q Consensus 318 ----~--~~~~~~~~v~~l~~~~~~~~l~~-~~~dg~i~iwd~~~-~~~-~~~~~~-~~~~~v~~~~~~~~~l~s~~~dg 387 (473)
. .....-.....| +++++.|+. -...+.|..||+.. +.. ....+. .....-+++.++|+++++....+
T Consensus 156 ~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~ 233 (306)
T 2p4o_A 156 HPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYN 233 (306)
T ss_dssp CGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTC
T ss_pred CCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCC
Confidence 0 001111234555 778765554 45678999999864 211 111111 11122256677898877777788
Q ss_pred cEEEEecCCCCceeEEEEecCCCCceeEEEEe---cCCC
Q 012007 388 NICLWRREESGAHSCLAVLTGHTGPVKCLAVE---EDRD 423 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~---~~~~ 423 (473)
.|.+++... . ...+..+.......++++|. +++.
T Consensus 234 ~V~~~~~~G-~-~~~~~~~~~~~~~p~~~a~~g~~~d~~ 270 (306)
T 2p4o_A 234 SVVRIAPDR-S-TTIIAQAEQGVIGSTAVAFGQTEGDCT 270 (306)
T ss_dssp CEEEECTTC-C-EEEEECGGGTCTTEEEEEECCSTTTTT
T ss_pred eEEEECCCC-C-EEEEeecccccCCceEEEEecccCCCC
Confidence 999998753 1 22233333333568999998 7765
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.3e-05 Score=69.76 Aligned_cols=173 Identities=10% Similarity=0.055 Sum_probs=107.2
Q ss_pred eeEEEEcCCCCEEEEEeCCC--CEEEEEcCCCeeeEEeecCCCc-eeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcce
Q 012007 238 VSCLSLNAEQGLLYSGSWDK--TLKVWRISDCKCLESINAHDDA-INSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKH 314 (473)
Q Consensus 238 v~~l~~~~~~~~l~s~s~dg--~v~vwd~~~~~~~~~~~~~~~~-v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 314 (473)
...|.|+ ++.++.+.+.+| .|+++|+.+++.+..+...... -..+....+.+.++.-.++.+.+||..+..
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~----- 118 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR----- 118 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCC-----
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCc-----
Confidence 4788998 666666666665 8999999999999888754332 233555444455555568999999987432
Q ss_pred eeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeec---Cc-ceEEEEEe-cCCEEEEEeCCCcE
Q 012007 315 CLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRG---HK-MAVLCLAA-AGNLVFSGSADRNI 389 (473)
Q Consensus 315 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~-~~v~~~~~-~~~~l~s~~~dg~i 389 (473)
....+.... ....+.+++..|+.+..++.|.++|..+......+..+ .. ..+..+.+ +|.+.+..-.++.|
T Consensus 119 -~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I 194 (262)
T 3nol_A 119 -QVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKI 194 (262)
T ss_dssp -EEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEE
T ss_pred -EEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeE
Confidence 122222111 11233356777777766788999999875544333221 11 11222333 56544444467899
Q ss_pred EEEecCCCCceeEEEEecCC------------CCceeEEEEecCCC
Q 012007 390 CLWRREESGAHSCLAVLTGH------------TGPVKCLAVEEDRD 423 (473)
Q Consensus 390 ~iwd~~~~~~~~~~~~~~~h------------~~~V~~l~~~~~~~ 423 (473)
.+.|..++ +.+..+... ....+.|||+|+..
T Consensus 195 ~vIDp~tG---~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~ 237 (262)
T 3nol_A 195 VRIDPETG---KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH 237 (262)
T ss_dssp EEECTTTC---BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT
T ss_pred EEEECCCC---cEEEEEECCcCccccccccCcCCceEEEEEcCCCC
Confidence 99999984 444433321 23568999999887
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.9e-05 Score=69.55 Aligned_cols=194 Identities=6% Similarity=-0.012 Sum_probs=120.6
Q ss_pred cEEEEEEeCCCCEEEEEeC--CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE
Q 012007 163 LVKAIIISGDSNKIFTGHQ--DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 163 ~V~~l~~s~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 240 (473)
....++|++++.+.++.+. ++.|++.|+.+++......+.. ......
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~-------------------------------~~fgeG 70 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD-------------------------------SYFGEG 70 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT-------------------------------TCCEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC-------------------------------CcceEE
Confidence 4689999998744444443 5799999999998766554321 111223
Q ss_pred EEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeee
Q 012007 241 LSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQV 319 (473)
Q Consensus 241 l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 319 (473)
+++. ++.|+.+. .++.+.++|..+.+.+.++......-..++.. .+.++++..++.|.++|..+... ....
T Consensus 71 i~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt~D-g~~l~vs~gs~~l~viD~~t~~v-----~~~I 142 (266)
T 2iwa_A 71 LTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATD-GKILYGSDGTSILYEIDPHTFKL-----IKKH 142 (266)
T ss_dssp EEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCEEEEC-SSSEEEECSSSEEEEECTTTCCE-----EEEE
T ss_pred EEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEEEEEC-CCEEEEECCCCeEEEEECCCCcE-----EEEE
Confidence 4554 45666655 56889999999999999886431222344442 23555556788999999874321 1111
Q ss_pred ecc-C---CccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeec-C-------------cceEEEEEecCC-EE
Q 012007 320 LLK-H---ENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRG-H-------------KMAVLCLAAAGN-LV 380 (473)
Q Consensus 320 ~~~-~---~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~-------------~~~v~~~~~~~~-~l 380 (473)
..+ . -..+..+.|. ++...+....++.|.+.|..++.....+..+ - ...-.+++++++ ++
T Consensus 143 ~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lf 221 (266)
T 2iwa_A 143 NVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIF 221 (266)
T ss_dssp ECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEE
T ss_pred EECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEE
Confidence 111 1 1236778888 6766666666889999999886654333221 0 112345556655 56
Q ss_pred EEEeCCCcEEEEecCC
Q 012007 381 FSGSADRNICLWRREE 396 (473)
Q Consensus 381 ~s~~~dg~i~iwd~~~ 396 (473)
+++...+.|.+.++..
T Consensus 222 VTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 222 VTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EEETTCSEEEEEEEEE
T ss_pred EECCCCCeEEEEEEec
Confidence 6666778888888765
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.57 E-value=4.1e-05 Score=69.83 Aligned_cols=190 Identities=9% Similarity=0.004 Sum_probs=108.6
Q ss_pred EEecCCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCC-C-eEEEEeCCCCCeeeEEeeccccc
Q 012007 129 LAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQD-G-KIRIWKVSRKNASVHKRVGSLPT 206 (473)
Q Consensus 129 ~~~~g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d-g-~i~vwd~~~~~~~~~~~~~~~~~ 206 (473)
+.++|+++++-..++.|..||............+.+..|++.++|+++++.... + .|..++..+++........
T Consensus 39 ~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~---- 114 (306)
T 2p4o_A 39 SAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP---- 114 (306)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT----
T ss_pred ECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCC----
Confidence 344577777766788999998664433333334578899999999866655432 2 4666676666543222110
Q ss_pred cceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee-eEEee---------cC
Q 012007 207 FKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC-LESIN---------AH 276 (473)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~-~~~~~---------~~ 276 (473)
.......++..+++..+++-..++.|.++|...++. +.... ..
T Consensus 115 ---------------------------~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~ 167 (306)
T 2p4o_A 115 ---------------------------DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESV 167 (306)
T ss_dssp ---------------------------TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCC
T ss_pred ---------------------------CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCC
Confidence 111123334444444444444578899999876531 21110 11
Q ss_pred CCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC
Q 012007 277 DDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 277 ~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 354 (473)
-...+.+ ++++ ++++-...+.|..+++...+.......... ......|+++++|+++++....+.|.++|..
T Consensus 168 ~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~----~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 168 FPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE----QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp SCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE----SCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred CCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec----cCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 1234455 4554 445556678999999864211111111111 1345668999999887777778899999976
Q ss_pred C
Q 012007 355 K 355 (473)
Q Consensus 355 ~ 355 (473)
.
T Consensus 242 G 242 (306)
T 2p4o_A 242 R 242 (306)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=6.5e-05 Score=74.72 Aligned_cols=286 Identities=10% Similarity=0.053 Sum_probs=144.0
Q ss_pred ecCCEEEEeeCCCcEEEeeCCc--cccccc--cCc--ccEEE-EEEeCCCCEEEEEeC------CCeEEEEeCCCCCeee
Q 012007 131 ASGDLLYTGSDSKNIRVWKNLK--EFSGFK--SNS--GLVKA-IIISGDSNKIFTGHQ------DGKIRIWKVSRKNASV 197 (473)
Q Consensus 131 ~~g~~l~tg~~dg~i~vwd~~~--~~~~~~--~h~--~~V~~-l~~s~~~~~l~s~~~------dg~i~vwd~~~~~~~~ 197 (473)
.++..++.++.|+.|..+|... .+-.+. .+. ..+.+ .... ++ .++.++. +|.|..+|..+++..-
T Consensus 113 ~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 190 (571)
T 2ad6_A 113 YGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKW 190 (571)
T ss_dssp EETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred EECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEE
Confidence 3466777788888888888542 221111 110 01111 1111 34 5666654 7999999999998776
Q ss_pred EEeeccccccceeEeecC-CCcceE-------EEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC-------------
Q 012007 198 HKRVGSLPTFKDYVKSSV-NPKNYV-------EVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD------------- 256 (473)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d------------- 256 (473)
......... ........ ....+. ...... ....+.......+++.++...++.+..+
T Consensus 191 ~~~~~~~~~-~~~~~p~~~~~~~~~G~~~~g~~~w~~~-~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~ 268 (571)
T 2ad6_A 191 RAFATGSDD-SVRLAKDFNSANPHYGQFGLGTKTWEGD-AWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDN 268 (571)
T ss_dssp EEESSSCHH-HHTBCTTTTTTCGGGCCSSHHHHTSSTT-GGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCC
T ss_pred EEccCCCcc-ccccCcccccccccccccccccccCccc-ceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCc
Confidence 555332110 00000000 000000 000000 0000000111235566766677776532
Q ss_pred ---CCEEEEEcCCCeeeEEeecC--CC----ceeE---EEEcCCC----EEEEEeCCCcEEEEeCcccCCCcceeeee--
Q 012007 257 ---KTLKVWRISDCKCLESINAH--DD----AINS---VVAGFDS----LVFTGSADGTVKVWRRELQGKGTKHCLAQ-- 318 (473)
Q Consensus 257 ---g~v~vwd~~~~~~~~~~~~~--~~----~v~~---l~~~~~~----~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-- 318 (473)
+.|..+|..+++.+..++.. .. .+.. +....++ .++.++.+|.+.++|.++++..-......
T Consensus 269 ~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~ 348 (571)
T 2ad6_A 269 KWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAV 348 (571)
T ss_dssp TTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTC
T ss_pred eeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCc
Confidence 35999999999998877632 11 1111 1111244 46678889999999987543211100000
Q ss_pred ----eec-cCCccE--------------------------EEEEEccCCCEEEEeC------------------------
Q 012007 319 ----VLL-KHENAV--------------------------TALAVNQESAVVYCGS------------------------ 343 (473)
Q Consensus 319 ----~~~-~~~~~v--------------------------~~l~~~~~~~~l~~~~------------------------ 343 (473)
... ....++ ..++++|+..+|++..
T Consensus 349 ~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~ 428 (571)
T 2ad6_A 349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGAT 428 (571)
T ss_dssp CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred cccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccc
Confidence 000 000011 2467888777776653
Q ss_pred -------------CCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCC
Q 012007 344 -------------SDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHT 410 (473)
Q Consensus 344 -------------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~ 410 (473)
.+|.|..||..+++..-....+.......+...+.+++.++.|+.|+.||..++ +.+..+....
T Consensus 429 ~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG---~~lw~~~~~~ 505 (571)
T 2ad6_A 429 LAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDG---KELWNFKMPS 505 (571)
T ss_dssp EEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTC---CEEEEEECSS
T ss_pred ceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCC---CEEEEEeCCC
Confidence 357899999887655433222221111223456788888999999999999984 4454444222
Q ss_pred C-ceeEEEEecCCC
Q 012007 411 G-PVKCLAVEEDRD 423 (473)
Q Consensus 411 ~-~V~~l~~~~~~~ 423 (473)
. .-.-+.+..++.
T Consensus 506 ~~~~~p~~~~~~G~ 519 (571)
T 2ad6_A 506 GGIGSPMTYSFKGK 519 (571)
T ss_dssp CCCSCCEEEEETTE
T ss_pred CcEeeeEEEEECCE
Confidence 1 112234556665
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.48 E-value=9.6e-05 Score=64.35 Aligned_cols=174 Identities=10% Similarity=0.052 Sum_probs=109.6
Q ss_pred CeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCC-ceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCccee
Q 012007 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDD-AINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHC 315 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~-~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 315 (473)
....|.|+ ++.+..+.+.+|.|+++|+++++.+..+ .... .-..++...+.+.++.-.++.+.+||..+..
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~------ 127 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQ------ 127 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTE------
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCc------
Confidence 34788887 4566667778889999999999998887 3322 2234666655566666678999999987432
Q ss_pred eeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeec-Ccc---eEEEEEe-cCCEEEEEeCCCcEE
Q 012007 316 LAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRG-HKM---AVLCLAA-AGNLVFSGSADRNIC 390 (473)
Q Consensus 316 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~---~v~~~~~-~~~~l~s~~~dg~i~ 390 (473)
....+... ..-..++ ++++.|+.+..++.|.++|.++......+..+ +.. .+..+.+ +|.+.+..-.++.|.
T Consensus 128 ~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~ 204 (268)
T 3nok_A 128 RERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVL 204 (268)
T ss_dssp EEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEE
T ss_pred EEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEE
Confidence 12222211 1113343 56778888777899999999876544333221 211 2233444 565444444678999
Q ss_pred EEecCCCCceeEEEEecC-------------CCCceeEEEEecCCCC
Q 012007 391 LWRREESGAHSCLAVLTG-------------HTGPVKCLAVEEDRDH 424 (473)
Q Consensus 391 iwd~~~~~~~~~~~~~~~-------------h~~~V~~l~~~~~~~~ 424 (473)
+.|..++ +.+..+.- -....+.||++|++..
T Consensus 205 vIDp~TG---~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~r 248 (268)
T 3nok_A 205 EIDPATG---TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGR 248 (268)
T ss_dssp EECTTTC---BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCC
T ss_pred EEeCCCC---cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCE
Confidence 9999984 33433321 1235689999998774
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=9e-05 Score=73.80 Aligned_cols=180 Identities=13% Similarity=0.082 Sum_probs=102.2
Q ss_pred EEEEcCCCCEEEEEeCC----------------CCEEEEEcCCCeeeEEeecCCC----------ceeEEEEc-CCC---
Q 012007 240 CLSLNAEQGLLYSGSWD----------------KTLKVWRISDCKCLESINAHDD----------AINSVVAG-FDS--- 289 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~d----------------g~v~vwd~~~~~~~~~~~~~~~----------~v~~l~~~-~~~--- 289 (473)
.+++.++..+++.+..+ +.|..+|..+|+.+..++.... ++. +... .++
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~ 323 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR 323 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence 35566777788877665 3799999999999887764321 111 2221 334
Q ss_pred -EEEEEeCCCcEEEEeCcccCCCcceeeee------eec-cCCccE--------------------------EEEEEccC
Q 012007 290 -LVFTGSADGTVKVWRRELQGKGTKHCLAQ------VLL-KHENAV--------------------------TALAVNQE 335 (473)
Q Consensus 290 -~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------~~~-~~~~~v--------------------------~~l~~~~~ 335 (473)
.++.++.+|.+.++|.++++..-...... ... ....++ ..++++|+
T Consensus 324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~ 403 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPK 403 (599)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred EEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCC
Confidence 56678899999999987554211111000 000 000000 23566666
Q ss_pred CCEEEEe---------------------------------C------CCCcEEEEecCCcccccceeecCcceEEEEEec
Q 012007 336 SAVVYCG---------------------------------S------SDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA 376 (473)
Q Consensus 336 ~~~l~~~---------------------------------~------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 376 (473)
..++++. + .+|.|..||+.+++..-....+.....-.+...
T Consensus 404 ~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~ta 483 (599)
T 1w6s_A 404 RELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATA 483 (599)
T ss_dssp TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEET
T ss_pred CCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEec
Confidence 5555442 1 346788888887654432222211111224557
Q ss_pred CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCC-ceeEEEEecCCC
Q 012007 377 GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTG-PVKCLAVEEDRD 423 (473)
Q Consensus 377 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-~V~~l~~~~~~~ 423 (473)
+.+++.++.|+.|+.||.+++ +.+..+.-..+ ...-+.+..+++
T Consensus 484 gg~vf~gt~dg~l~A~D~~tG---~~lW~~~l~~g~~~~P~~y~~~G~ 528 (599)
T 1w6s_A 484 GDLVFYGTLDGYLKARDSDTG---DLLWKFKIPSGAIGYPMTYTHKGT 528 (599)
T ss_dssp TTEEEEECTTSEEEEEETTTC---CEEEEEECSSCCCSCCEEEEETTE
T ss_pred CCEEEEECCCCeEEEEECCCC---CEEEEeeCCCCcEeccEEEEeCCE
Confidence 888889999999999999994 44554432222 122345555654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00015 Score=62.58 Aligned_cols=176 Identities=11% Similarity=0.016 Sum_probs=107.8
Q ss_pred CCeeEEEEcCCCCEEEEEeCC--CCEEEEEcCCCeeeEEeecCCCc-eeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCc
Q 012007 236 DAVSCLSLNAEQGLLYSGSWD--KTLKVWRISDCKCLESINAHDDA-INSVVAGFDSLVFTGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~d--g~v~vwd~~~~~~~~~~~~~~~~-v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 312 (473)
.....+.|+. +.++.+.+.+ ..|+.+|+.+++.+..+...... -..++...+.+....-.++.+.+||..+..
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~--- 96 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLT--- 96 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTE---
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCc---
Confidence 4467899986 4555555554 48999999999999888654332 234555444455556678999999986422
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeec-Cc---ceEEEEEec-CCEEEEEeCCC
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRG-HK---MAVLCLAAA-GNLVFSGSADR 387 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~---~~v~~~~~~-~~~l~s~~~dg 387 (473)
....+.... .-..++ +++..|+.+..++.|.++|..+......+..+ +. ..+..+.+. |...+..-.+.
T Consensus 97 ---~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~ 170 (243)
T 3mbr_X 97 ---PRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTS 170 (243)
T ss_dssp ---EEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTT
T ss_pred ---EEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCC
Confidence 222222211 113344 56666777777889999999875544333221 11 122344454 55444444577
Q ss_pred cEEEEecCCCCceeEEEEecC-------------CCCceeEEEEecCCCC
Q 012007 388 NICLWRREESGAHSCLAVLTG-------------HTGPVKCLAVEEDRDH 424 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~~~~-------------h~~~V~~l~~~~~~~~ 424 (473)
.|.+.|..++ +.+..+.- -....+.||++|+...
T Consensus 171 ~I~vIDp~tG---~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~ 217 (243)
T 3mbr_X 171 RIARIDPASG---KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDR 217 (243)
T ss_dssp EEEEECTTTC---BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTE
T ss_pred eEEEEECCCC---CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCE
Confidence 9999999984 34443321 1235689999998773
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.41 E-value=6e-05 Score=65.62 Aligned_cols=159 Identities=9% Similarity=0.039 Sum_probs=99.9
Q ss_pred ccEEEEEEeCCCCEEEEEeCCC--eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 162 GLVKAIIISGDSNKIFTGHQDG--KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
.-...|.|+ ++.+..+.+.+| .|+++|+.+++......+. ....
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~---------------------------------~~~F 88 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG---------------------------------KRYF 88 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC---------------------------------TTCC
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC---------------------------------Cccc
Confidence 346889998 676677777776 8999999999876655432 1121
Q ss_pred EEEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeee
Q 012007 240 CLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQ 318 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 318 (473)
...+.++++.|+... .++.+.+||..+.+.+.++..... =..++.. .+.|+....++.|.++|..+.... .....
T Consensus 89 geGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e-G~glt~d-g~~L~~SdGs~~i~~iDp~T~~v~--~~I~V 164 (262)
T 3nol_A 89 GEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGE-GWGLTHN-DQYLIMSDGTPVLRFLDPESLTPV--RTITV 164 (262)
T ss_dssp EEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCCEEEC-SSCEEECCSSSEEEEECTTTCSEE--EEEEC
T ss_pred eeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCC-ceEEecC-CCEEEEECCCCeEEEEcCCCCeEE--EEEEe
Confidence 211222355666665 478899999999999999885432 2345543 335555555788999998743321 11111
Q ss_pred eeccCC-ccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccc
Q 012007 319 VLLKHE-NAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSH 359 (473)
Q Consensus 319 ~~~~~~-~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 359 (473)
...+.. ..++.+.|. +|+..+..-.++.|.+.|.+++...
T Consensus 165 ~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~ 205 (262)
T 3nol_A 165 TAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVT 205 (262)
T ss_dssp EETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEE
T ss_pred ccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEE
Confidence 111111 334567776 6766666667889999999876543
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=9.4e-05 Score=73.59 Aligned_cols=153 Identities=9% Similarity=0.003 Sum_probs=87.7
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEE
Q 012007 173 SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYS 252 (473)
Q Consensus 173 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s 252 (473)
+..|+.++.|+.|..+|..+++..-............ -...++ . .+..+++
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~-----------------------~~~~P~----v--~~g~v~v 165 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGST-----------------------LTQAPF----V--AKDTVLM 165 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCB-----------------------CCSCCE----E--ETTEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccce-----------------------eccCCE----E--ECCEEEE
Confidence 4588888899999999999998766554321100000 011111 1 1345666
Q ss_pred EeC------CCCEEEEEcCCCeeeEEeecCCCc-------------------------------------e-eEEEEcCC
Q 012007 253 GSW------DKTLKVWRISDCKCLESINAHDDA-------------------------------------I-NSVVAGFD 288 (473)
Q Consensus 253 ~s~------dg~v~vwd~~~~~~~~~~~~~~~~-------------------------------------v-~~l~~~~~ 288 (473)
++. ++.|..+|.++++.+..+...... + ..+++.++
T Consensus 166 g~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~ 245 (571)
T 2ad6_A 166 GCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPK 245 (571)
T ss_dssp ECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETT
T ss_pred EecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCC
Confidence 654 789999999999998877542211 0 12344443
Q ss_pred -CEEEEEeCC----------------CcEEEEeCcccCCCcceeeeeeeccC--------CccEEEEEEccCCC---EEE
Q 012007 289 -SLVFTGSAD----------------GTVKVWRRELQGKGTKHCLAQVLLKH--------ENAVTALAVNQESA---VVY 340 (473)
Q Consensus 289 -~~l~s~~~d----------------g~i~vwd~~~~~~~~~~~~~~~~~~~--------~~~v~~l~~~~~~~---~l~ 340 (473)
+.++.+..+ +.|..+|.++++. .... ....| ..++. +....+|+ .++
T Consensus 246 ~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~--~W~~--~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~ 320 (571)
T 2ad6_A 246 LNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA--KWGY--QKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLS 320 (571)
T ss_dssp TTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE--EEEE--ESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEE
T ss_pred CCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcE--EEEe--cCCCCcccccccCCCCEE-EecccCCcEEEEEE
Confidence 466665532 2588888875432 1111 11111 12222 22234673 677
Q ss_pred EeCCCCcEEEEecCCcccc
Q 012007 341 CGSSDGLVNFWECEKHLSH 359 (473)
Q Consensus 341 ~~~~dg~i~iwd~~~~~~~ 359 (473)
.++.+|.+.++|.++++..
T Consensus 321 ~~~~~G~l~~lD~~tG~~~ 339 (571)
T 2ad6_A 321 HIDRNGILYTLNRENGNLI 339 (571)
T ss_dssp EECTTSEEEEEETTTCCEE
T ss_pred EeCCCcEEEEEECCCCCEE
Confidence 8899999999998876543
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00012 Score=72.95 Aligned_cols=158 Identities=9% Similarity=0.052 Sum_probs=90.3
Q ss_pred EEEeCCCCE----EEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE-E
Q 012007 167 IIISGDSNK----IFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC-L 241 (473)
Q Consensus 167 l~~s~~~~~----l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l 241 (473)
+++.|.+.. |+.++.|+.|..+|..+++..-........ ....+.+ -
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~----------------------------~~~~~~ssP 162 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIK----------------------------VGSTLTIAP 162 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGG----------------------------GTCBCCSCC
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCC----------------------------ccceeecCC
Confidence 455443334 888889999999999999876554432110 0000110 0
Q ss_pred EEcCCCCEEEEEe------CCCCEEEEEcCCCeeeEEeecCCCc------------------------------------
Q 012007 242 SLNAEQGLLYSGS------WDKTLKVWRISDCKCLESINAHDDA------------------------------------ 279 (473)
Q Consensus 242 ~~~~~~~~l~s~s------~dg~v~vwd~~~~~~~~~~~~~~~~------------------------------------ 279 (473)
.+. + ..+++++ .++.|+.+|.++|+.+..+......
T Consensus 163 ~v~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~ 240 (599)
T 1w6s_A 163 YVV-K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGG 240 (599)
T ss_dssp EEE-T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCC
T ss_pred EEE-C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCC
Confidence 011 3 3455554 3789999999999998777543211
Q ss_pred -e-eEEEEcCC-CEEEEEeCCC----------------cEEEEeCcccCCCcceeeeeeeccCC--------ccEEEEEE
Q 012007 280 -I-NSVVAGFD-SLVFTGSADG----------------TVKVWRRELQGKGTKHCLAQVLLKHE--------NAVTALAV 332 (473)
Q Consensus 280 -v-~~l~~~~~-~~l~s~~~dg----------------~i~vwd~~~~~~~~~~~~~~~~~~~~--------~~v~~l~~ 332 (473)
+ ..+++.++ ++++.+..++ .|..+|.++++. ... .....|. .++. +..
T Consensus 241 ~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~--~W~--~q~~~~d~wd~d~~~~p~l-~d~ 315 (599)
T 1w6s_A 241 TNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEA--KFG--YQKTPHDEWDYAGVNVMML-SEQ 315 (599)
T ss_dssp CCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCE--EEE--EESSTTCSSCCCCCCCCEE-EEE
T ss_pred ccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCce--eeE--eecCCCccccccCCCccEE-Eec
Confidence 0 02233333 4777766553 788888875432 111 1122221 2222 222
Q ss_pred c-cCC---CEEEEeCCCCcEEEEecCCcccc
Q 012007 333 N-QES---AVVYCGSSDGLVNFWECEKHLSH 359 (473)
Q Consensus 333 ~-~~~---~~l~~~~~dg~i~iwd~~~~~~~ 359 (473)
. .+| ..++.++.+|.+.++|.++++.+
T Consensus 316 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 316 KDKDGKARKLLTHPDRNGIVYTLDRTDGALV 346 (599)
T ss_dssp ECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred cccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence 2 466 56778899999999998876543
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.37 E-value=0.00014 Score=69.62 Aligned_cols=152 Identities=6% Similarity=0.005 Sum_probs=92.5
Q ss_pred cEEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE
Q 012007 163 LVKAIIISG-DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL 241 (473)
Q Consensus 163 ~V~~l~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 241 (473)
....|+++| ++..|+.+...+.|+.+|+..+....... .......|
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~---------------------------------~~~~P~~i 184 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS---------------------------------GLSKVRTI 184 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC---------------------------------CCSCEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec---------------------------------CCCCcceE
Confidence 457889998 45567766665788889887654322111 33457789
Q ss_pred EEcCCCCEEEEEeCC-C----CEEEEEcCCCeee--EEeecCCCceeEEEEcC-CCEEE-EEeCCCcEEEEeCcccCCCc
Q 012007 242 SLNAEQGLLYSGSWD-K----TLKVWRISDCKCL--ESINAHDDAINSVVAGF-DSLVF-TGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 242 ~~~~~~~~l~s~s~d-g----~v~vwd~~~~~~~--~~~~~~~~~v~~l~~~~-~~~l~-s~~~dg~i~vwd~~~~~~~~ 312 (473)
+|++++++|+++... + .+.+.+. .+... ..+.. ......+++.+ ++.|+ +-..++.|..++....
T Consensus 185 a~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~---- 258 (430)
T 3tc9_A 185 CWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ---- 258 (430)
T ss_dssp EECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT----
T ss_pred EEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC----
Confidence 999999977777652 1 2333443 33221 22221 23456778888 66544 4456788999987621
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCE-EEEeCCCCcEEEEecC
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAV-VYCGSSDGLVNFWECE 354 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~~~dg~i~iwd~~ 354 (473)
................|+|+|++++ +++-...+.|..++..
T Consensus 259 -~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 259 -ETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp -EEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred -cEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 1101111112245678999999994 4555667889998765
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00064 Score=67.70 Aligned_cols=180 Identities=17% Similarity=0.102 Sum_probs=104.5
Q ss_pred EEEEcCCCCEEEEEeC--------------------C----CCEEEEEcCCCeeeEEeec--CC--------CceeEEEE
Q 012007 240 CLSLNAEQGLLYSGSW--------------------D----KTLKVWRISDCKCLESINA--HD--------DAINSVVA 285 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~--------------------d----g~v~vwd~~~~~~~~~~~~--~~--------~~v~~l~~ 285 (473)
.++++++..+++.+.. | +.|..+|..+|+.+..++. |. .++. +..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~ 328 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY 328 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence 4677787788887763 2 5799999999999888753 32 1111 111
Q ss_pred c-CCC----EEEEEeCCCcEEEEeCcccCCCcceeeee------ee-------------c---------cCCcc------
Q 012007 286 G-FDS----LVFTGSADGTVKVWRRELQGKGTKHCLAQ------VL-------------L---------KHENA------ 326 (473)
Q Consensus 286 ~-~~~----~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------~~-------------~---------~~~~~------ 326 (473)
. .++ .++.++.+|.+.++|.++++..-...... .. . .....
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~ 408 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF 408 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence 1 234 67789999999999987543211100000 00 0 00000
Q ss_pred -----EEEEEEccCCCEEEEeC---------------------------------CCCcEEEEecCCcccccceeecCcc
Q 012007 327 -----VTALAVNQESAVVYCGS---------------------------------SDGLVNFWECEKHLSHGGVLRGHKM 368 (473)
Q Consensus 327 -----v~~l~~~~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~ 368 (473)
-..++++|+..++++.. .+|.|..||+.+++..-....+...
T Consensus 409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~ 488 (582)
T 1flg_A 409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPL 488 (582)
T ss_dssp TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCC
T ss_pred ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCC
Confidence 01356666655554432 3578999999876554332222221
Q ss_pred eEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCce-eEEEEecCCC
Q 012007 369 AVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPV-KCLAVEEDRD 423 (473)
Q Consensus 369 ~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V-~~l~~~~~~~ 423 (473)
.-..+...+.+++.|+.|+.++.||.+++ +.+..+....+.+ .-+.+..+++
T Consensus 489 ~~g~~~tagglvf~g~~dg~l~A~D~~tG---~~lW~~~~~~g~~a~P~~y~~~G~ 541 (582)
T 1flg_A 489 WAGVLATAGNLVFTGTGDGYFKAFDAKSG---KELWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp CSCCEEETTTEEEEECTTSEEEEEETTTC---CEEEEEECSSCCCSCCEEEEETTE
T ss_pred cccceEeCCCEEEEECCCCcEEEEECCCC---CEEEEecCCCCcccCceEEEECCE
Confidence 11234456888999999999999999984 5555554432221 2356666665
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00044 Score=60.50 Aligned_cols=205 Identities=10% Similarity=0.097 Sum_probs=122.5
Q ss_pred cccCcccEEEEEEeCCCCEEEE-EeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeecc
Q 012007 157 FKSNSGLVKAIIISGDSNKIFT-GHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY 235 (473)
Q Consensus 157 ~~~h~~~V~~l~~s~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (473)
+.+-.+.+..|+|+|+++.|++ ...++.|...|.. ++......+. -.
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~-------------------------------g~ 69 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD-------------------------------FV 69 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS-------------------------------SC
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC-------------------------------CC
Confidence 3444467999999998766655 6678889888987 5544443322 12
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee---eEEee------cCCCceeEEEEcCCC-EEEEEeCCCcEEEEeC
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC---LESIN------AHDDAINSVVAGFDS-LVFTGSADGTVKVWRR 305 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~---~~~~~------~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~ 305 (473)
.....|++.+++.++++.-.++.+.++++..... +.... ........+++.+.+ .|+++.......+|.+
T Consensus 70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~ 149 (255)
T 3qqz_A 70 KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKV 149 (255)
T ss_dssp SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEE
Confidence 4466788888887666655677888888765432 22221 123456899999887 6666666656666665
Q ss_pred cccCCCcceeeeee----eccCCccEEEEEEccC-CCEEEEeCCCCcEEEEecCCcccccceee-cC--------cceEE
Q 012007 306 ELQGKGTKHCLAQV----LLKHENAVTALAVNQE-SAVVYCGSSDGLVNFWECEKHLSHGGVLR-GH--------KMAVL 371 (473)
Q Consensus 306 ~~~~~~~~~~~~~~----~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~--------~~~v~ 371 (473)
.............. ...+...+.+++++|. +++++.......|.++|..........+. +. ...-.
T Consensus 150 ~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGi 229 (255)
T 3qqz_A 150 NGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGV 229 (255)
T ss_dssp ESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEE
T ss_pred cccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCee
Confidence 41000000111100 0112345789999995 45666777778899999875422222222 11 22446
Q ss_pred EEEecCCEEEEEeCCCcEEEEec
Q 012007 372 CLAAAGNLVFSGSADRNICLWRR 394 (473)
Q Consensus 372 ~~~~~~~~l~s~~~dg~i~iwd~ 394 (473)
++.++|++.++ ++-+.++.|..
T Consensus 230 a~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 230 AMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EECTTCCEEEE-ETTTEEEEEEC
T ss_pred EECCCCCEEEE-cCCceEEEEEe
Confidence 77778885555 66666666654
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.27 E-value=8.9e-05 Score=76.54 Aligned_cols=190 Identities=15% Similarity=0.076 Sum_probs=104.3
Q ss_pred EEEE-ecCCEEEEeeC-CC----cEEEeeCCcc-ccccccC-cccEEEEEEeCCCCEEEEEeCC-----CeEEEEeCCCC
Q 012007 127 YSLA-ASGDLLYTGSD-SK----NIRVWKNLKE-FSGFKSN-SGLVKAIIISGDSNKIFTGHQD-----GKIRIWKVSRK 193 (473)
Q Consensus 127 ~~~~-~~g~~l~tg~~-dg----~i~vwd~~~~-~~~~~~h-~~~V~~l~~s~~~~~l~s~~~d-----g~i~vwd~~~~ 193 (473)
.+++ +||++||.+.. +| .|+++|+... .. +..+ ......++|+|||+.|+....| ..|.++++.++
T Consensus 179 ~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~ 257 (751)
T 2xe4_A 179 VKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-IADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKL 257 (751)
T ss_dssp EEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-CCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSC
T ss_pred eEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-CCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCC
Confidence 4678 88998775543 33 4999997643 21 1111 1224578999999888877665 25777777665
Q ss_pred CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC---CCCEEEEEcCCC--e
Q 012007 194 NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW---DKTLKVWRISDC--K 268 (473)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~---dg~v~vwd~~~~--~ 268 (473)
......... .........+.|+|||++|+..+. ...|.++|+.++ +
T Consensus 258 ~~~~~lv~~-----------------------------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~ 308 (751)
T 2xe4_A 258 QSEDVCLYE-----------------------------EHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAH 308 (751)
T ss_dssp GGGCEEEEE-----------------------------CCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTC
T ss_pred chhcEEEEe-----------------------------cCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCC
Confidence 321111000 012234567889999998887663 345888898765 2
Q ss_pred e--eEEeecCCCceeEEEEcCCCEE-EEEeCC--C--cEEEEeCcccCCCcceeeeee-eccCCc--cEEEEEEccCCCE
Q 012007 269 C--LESINAHDDAINSVVAGFDSLV-FTGSAD--G--TVKVWRRELQGKGTKHCLAQV-LLKHEN--AVTALAVNQESAV 338 (473)
Q Consensus 269 ~--~~~~~~~~~~v~~l~~~~~~~l-~s~~~d--g--~i~vwd~~~~~~~~~~~~~~~-~~~~~~--~v~~l~~~~~~~~ 338 (473)
. .............+.|+.++.| +....+ + .|..+++.... . ... +..+.. .+..+.+. .+.+
T Consensus 309 ~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~--~----~~~~li~~~~~~~l~~~~~~-~~~l 381 (751)
T 2xe4_A 309 NTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPS--D----WSHVLVDHSEDVFMESIAVR-SNYL 381 (751)
T ss_dssp CCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTT--C----CCCEEECCCSSEEEEEEEEC-SSEE
T ss_pred ceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcc--c----ceeeEECCCCCcEEEEEEEE-CCEE
Confidence 2 2222334455566665555644 444433 3 45555553211 1 111 222222 44555555 3345
Q ss_pred EEEeCCCCc--EEEEec
Q 012007 339 VYCGSSDGL--VNFWEC 353 (473)
Q Consensus 339 l~~~~~dg~--i~iwd~ 353 (473)
+++...++. |.++|+
T Consensus 382 v~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 382 VVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEETTEEEEEEEEC
T ss_pred EEEEEeCCEEEEEEEec
Confidence 566666775 455564
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.24 E-value=5.1e-05 Score=66.08 Aligned_cols=188 Identities=10% Similarity=0.088 Sum_probs=114.0
Q ss_pred cceeeeeeeccc--EEEEEecCC-EEEEeeCCCcEEEeeCC--ccccccccCcccE--EEEEEeCCCCEEEE-EeCCCeE
Q 012007 114 GLIGSIVRKEGH--IYSLAASGD-LLYTGSDSKNIRVWKNL--KEFSGFKSNSGLV--KAIIISGDSNKIFT-GHQDGKI 185 (473)
Q Consensus 114 ~~~~~l~~h~~~--V~~~~~~g~-~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V--~~l~~s~~~~~l~s-~~~dg~i 185 (473)
..+.++ .|... ...+.++++ +..+.+.+|.|+++|.. +.+..+ - .... ..+++. ++.|+. ...++.+
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~--g~~Ly~ltw~~~~v 118 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD--GERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC--SSCEEEEESSSCEE
T ss_pred EEEEEE-cCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe--CCEEEEEEccCCEE
Confidence 334444 45433 467777766 45555667889999965 333333 1 1222 235554 434444 4468899
Q ss_pred EEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcC
Q 012007 186 RIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS 265 (473)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~ 265 (473)
.+||..+.+........ ..-..++ ++++.|+.+..++.|.++|..
T Consensus 119 ~V~D~~Tl~~~~ti~~~---------------------------------~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~ 163 (268)
T 3nok_A 119 FTWSGMPPQRERTTRYS---------------------------------GEGWGLC--YWNGKLVRSDGGTMLTFHEPD 163 (268)
T ss_dssp EEEETTTTEEEEEEECS---------------------------------SCCCCEE--EETTEEEEECSSSEEEEECTT
T ss_pred EEEECCcCcEEEEEeCC---------------------------------CceeEEe--cCCCEEEEECCCCEEEEEcCC
Confidence 99999998876655432 1112333 467888888778999999999
Q ss_pred CCeeeEEeecCC-----CceeEEEEcCCCEEEEEe-CCCcEEEEeCcccCCCcceeeeee-------eccCCccEEEEEE
Q 012007 266 DCKCLESINAHD-----DAINSVVAGFDSLVFTGS-ADGTVKVWRRELQGKGTKHCLAQV-------LLKHENAVTALAV 332 (473)
Q Consensus 266 ~~~~~~~~~~~~-----~~v~~l~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~-------~~~~~~~v~~l~~ 332 (473)
+.+.+..+.... ..++.+.|. ++.|++.. .+..|.+.|.+++.......+... ......-.+.|++
T Consensus 164 T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~ 242 (268)
T 3nok_A 164 GFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAV 242 (268)
T ss_dssp TCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEE
T ss_pred CCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEE
Confidence 999888876422 245667776 55555554 578899999875432111111100 0112346789999
Q ss_pred ccCCCEEEEe
Q 012007 333 NQESAVVYCG 342 (473)
Q Consensus 333 ~~~~~~l~~~ 342 (473)
+|+++.|++.
T Consensus 243 dp~~~rlfVT 252 (268)
T 3nok_A 243 EPGSGRIFMT 252 (268)
T ss_dssp CTTTCCEEEE
T ss_pred cCCCCEEEEe
Confidence 9976544444
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.003 Score=58.52 Aligned_cols=224 Identities=9% Similarity=0.034 Sum_probs=126.3
Q ss_pred EEEEeeCCCcEEEeeCCc-cccccccCcccEEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCeeeEEeeccccccceeEe
Q 012007 135 LLYTGSDSKNIRVWKNLK-EFSGFKSNSGLVKAIIISGDSNKIFTGH-QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVK 212 (473)
Q Consensus 135 ~l~tg~~dg~i~vwd~~~-~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 212 (473)
+|+.+.. ..|+..+... ....+......+..++|++.+..|+... ..+.|..+++..........
T Consensus 46 ~ll~~~~-~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~------------ 112 (349)
T 3v64_C 46 VLLFANR-IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS------------ 112 (349)
T ss_dssp EEEEECB-SCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC------------
T ss_pred eeEeecc-cceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe------------
Confidence 4443333 4577766543 2222222334578999997666666554 56789999987654322111
Q ss_pred ecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE-eCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC-CE
Q 012007 213 SSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SL 290 (473)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~-~~ 290 (473)
........+++.+.+..|+.+ ...+.|.+.++........+.........+++.|. +.
T Consensus 113 --------------------~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ 172 (349)
T 3v64_C 113 --------------------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGT 172 (349)
T ss_dssp --------------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTE
T ss_pred --------------------CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCe
Confidence 012345678888755555444 45678999998654333333334456788999874 55
Q ss_pred EEEE-eCC-CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe-CCCCcEEEEecCCcccccceeecCc
Q 012007 291 VFTG-SAD-GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG-SSDGLVNFWECEKHLSHGGVLRGHK 367 (473)
Q Consensus 291 l~s~-~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~ 367 (473)
|+.. ... +.|..+++.... . .......-.....|++++++..|+.+ ...+.|..+|+...... .......
T Consensus 173 ly~td~~~~~~I~r~~~dG~~---~---~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~-~~~~~~~ 245 (349)
T 3v64_C 173 IYWTDWGNTPRIEASSMDGSG---R---RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK-AVISQGL 245 (349)
T ss_dssp EEEEECSSSCEEEEEETTSCS---C---EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSSC
T ss_pred EEEeccCCCCEEEEEeCCCCC---c---EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceE-EEEeCCC
Confidence 4444 334 678777765211 1 11111223457899999866655554 55678999998753221 1222112
Q ss_pred ceEEEEE-ecCCEEEEEeCCCcEEEEecCCCC
Q 012007 368 MAVLCLA-AAGNLVFSGSADRNICLWRREESG 398 (473)
Q Consensus 368 ~~v~~~~-~~~~~l~s~~~dg~i~iwd~~~~~ 398 (473)
.....++ ..+.++++-...+.|..++..++.
T Consensus 246 ~~P~giav~~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 246 PHPFAITVFEDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp SSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCceEEEEECCEEEEecCCCCeEEEEEccCCC
Confidence 2223333 345555555567788888855543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00048 Score=71.05 Aligned_cols=196 Identities=9% Similarity=0.035 Sum_probs=109.0
Q ss_pred cEEEEEEe-CCCCEEEEEeC-CC----eEEEEeCCCC-CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeecc
Q 012007 163 LVKAIIIS-GDSNKIFTGHQ-DG----KIRIWKVSRK-NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY 235 (473)
Q Consensus 163 ~V~~l~~s-~~~~~l~s~~~-dg----~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (473)
.+...+|| |||++||-+.. +| .|+++|+.++ +.... . -.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~---------------------------------~~ 220 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K---------------------------------VS 220 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C---------------------------------EE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c---------------------------------cc
Confidence 68889999 99998875443 33 4999999887 52110 0 00
Q ss_pred CCeeEEEEcCCCCEEEEEeCC-----CCEEEEEcCCCee--eEEee-cCCCceeEEEEcCCC-EEEEEe-C--CCcEEEE
Q 012007 236 DAVSCLSLNAEQGLLYSGSWD-----KTLKVWRISDCKC--LESIN-AHDDAINSVVAGFDS-LVFTGS-A--DGTVKVW 303 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~d-----g~v~vwd~~~~~~--~~~~~-~~~~~v~~l~~~~~~-~l~s~~-~--dg~i~vw 303 (473)
.....+.|+||++.|+....| ..|+++++.+++. ...+. ........+.|++++ +|+..+ . ...|.++
T Consensus 221 ~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~ 300 (751)
T 2xe4_A 221 GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLL 300 (751)
T ss_dssp EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEE
T ss_pred CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEE
Confidence 113467899999888777655 2588888877542 22222 223456678899998 444333 2 3457777
Q ss_pred eCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC----CcEEEEecCCcccccc-eeec-CcceEEEEEecC
Q 012007 304 RRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD----GLVNFWECEKHLSHGG-VLRG-HKMAVLCLAAAG 377 (473)
Q Consensus 304 d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~-~~~~-~~~~v~~~~~~~ 377 (473)
|+..... .................+.|+.++.+++....+ ..|..+|+.+...... .+.. ....+..+++.+
T Consensus 301 d~~~~~~--~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~ 378 (751)
T 2xe4_A 301 DLRKGNA--HNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRS 378 (751)
T ss_dssp ESSSCTT--CCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECS
T ss_pred ECCCCCC--CceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEEC
Confidence 8764211 110011222234445556655555555555444 3566677654212122 2222 222456677766
Q ss_pred CE-EEEEeCCCcEE--EEec
Q 012007 378 NL-VFSGSADRNIC--LWRR 394 (473)
Q Consensus 378 ~~-l~s~~~dg~i~--iwd~ 394 (473)
+. +++...++..+ ++++
T Consensus 379 ~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 379 NYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp SEEEEEEEETTEEEEEEEEC
T ss_pred CEEEEEEEeCCEEEEEEEec
Confidence 55 45566677544 5554
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.21 E-value=6.4e-05 Score=76.39 Aligned_cols=239 Identities=11% Similarity=0.065 Sum_probs=127.2
Q ss_pred EEEEeC-CCCEEEEEeCCC-----------eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee
Q 012007 166 AIIISG-DSNKIFTGHQDG-----------KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233 (473)
Q Consensus 166 ~l~~s~-~~~~l~s~~~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (473)
++++.+ +++.++.|+.+. .+.+||..+++........ ..
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~-----------------------------~~ 240 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV-----------------------------TK 240 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE-----------------------------CS
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC-----------------------------CC
Confidence 566777 788888887643 5788998877543221110 01
Q ss_pred ccCCeeEEEEcCCCCEEEEEeC-CCCEEEEEcCCCeeeEEeecCCC-ceeEEEEcCCC-EEEEEe-CC-----CcEEEEe
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISDCKCLESINAHDD-AINSVVAGFDS-LVFTGS-AD-----GTVKVWR 304 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~~~-~v~~l~~~~~~-~l~s~~-~d-----g~i~vwd 304 (473)
+.....++++..++.+++.|+. +..+.+||..+.+-...-..+.. .-.+++..+++ +++.|+ .+ ..+.+||
T Consensus 241 ~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd 320 (656)
T 1k3i_A 241 HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS 320 (656)
T ss_dssp CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred CCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeC
Confidence 3333445777889999999984 45799999987654332221211 11234455455 666666 34 5689999
Q ss_pred CcccCCCcceeee-----eeeccCCccEEEEEEccCCCEEEEeCCC---------CcEEEEecCCcccccceeecC----
Q 012007 305 RELQGKGTKHCLA-----QVLLKHENAVTALAVNQESAVVYCGSSD---------GLVNFWECEKHLSHGGVLRGH---- 366 (473)
Q Consensus 305 ~~~~~~~~~~~~~-----~~~~~~~~~v~~l~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~---- 366 (473)
.... ..... ..+..... ...+..++..++.|+.+ ..+..||..+..... ....+
T Consensus 321 ~~t~----~W~~~~~~~~~p~~~~~~---~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~-~~~~~~~~~ 392 (656)
T 1k3i_A 321 PSSK----TWTSLPNAKVNPMLTADK---QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK-SAGKRQSNR 392 (656)
T ss_dssp TTTT----EEEEETTSCSGGGCCCCT---TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE-EEEECEETT
T ss_pred CCCC----cceeCCCccccccccccc---cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee-cCCcccccc
Confidence 8632 11111 00000000 01122344444445444 356778876543111 11111
Q ss_pred -------cceEEEEE-ecCCEEEEEeCCC-----------cEEEEecCCCCceeEEEEecCCCCc-eeEEEEecCCCCCc
Q 012007 367 -------KMAVLCLA-AAGNLVFSGSADR-----------NICLWRREESGAHSCLAVLTGHTGP-VKCLAVEEDRDHDH 426 (473)
Q Consensus 367 -------~~~v~~~~-~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~~~h~~~-V~~l~~~~~~~~~~ 426 (473)
......+. .++++++.|+.++ .|.+||..+. .+..+..-..+... -.+++..++++
T Consensus 393 ~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~-~W~~~~~~~mp~~R~~~~~~~l~~g~--- 468 (656)
T 1k3i_A 393 GVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTS-PNTVFASNGLYFARTFHTSVVLPDGS--- 468 (656)
T ss_dssp EECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSC-CEEEECTTCCSSCCBSCEEEECTTSC---
T ss_pred ccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCC-CeeEEccCCCCCCcccCCeEECCCCC---
Confidence 11112222 3678888888543 5778887762 22222200112222 24456677887
Q ss_pred ccccCCCccEEEEEeeCC-----------CcEEEEEcCCC
Q 012007 427 EYHQKGDQRWTVYSGSLD-----------KSVKVWRVSEH 455 (473)
Q Consensus 427 ~~~~~~~~~~~l~s~s~D-----------g~v~iW~i~~~ 455 (473)
+++.||.+ ..+.+||....
T Consensus 469 ----------i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 469 ----------TFITGGQRRGIPFEDSTPVFTPEIYVPEQD 498 (656)
T ss_dssp ----------EEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred ----------EEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence 88888865 46889998654
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0021 Score=60.49 Aligned_cols=225 Identities=9% Similarity=0.033 Sum_probs=127.2
Q ss_pred CEEEEeeCCCcEEEeeCCc-cccccccCcccEEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCCeeeEEeeccccccceeE
Q 012007 134 DLLYTGSDSKNIRVWKNLK-EFSGFKSNSGLVKAIIISGDSNKIFTG-HQDGKIRIWKVSRKNASVHKRVGSLPTFKDYV 211 (473)
Q Consensus 134 ~~l~tg~~dg~i~vwd~~~-~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 211 (473)
.+|+.+.. ..|+..+... ....+......+..++|.+.+..|+.. ...+.|..+++...........
T Consensus 88 ~~l~~~~~-~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~---------- 156 (386)
T 3v65_B 88 PVLLFANR-IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST---------- 156 (386)
T ss_dssp CEEEEECB-SCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS----------
T ss_pred ceeEeecC-ccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC----------
Confidence 34444433 5677777653 222333334568899999766566554 4567899999876542221110
Q ss_pred eecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE-eCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC-C
Q 012007 212 KSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-S 289 (473)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~-~ 289 (473)
.......+++.+.+..|+.+ ...+.|.+.++........+.........+++.|. +
T Consensus 157 ----------------------~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g 214 (386)
T 3v65_B 157 ----------------------GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG 214 (386)
T ss_dssp ----------------------SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTT
T ss_pred ----------------------CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCC
Confidence 12234568888755555544 45677888887644333333334456788999875 4
Q ss_pred EEEEEe-CC-CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEE-eCCCCcEEEEecCCcccccceeecC
Q 012007 290 LVFTGS-AD-GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC-GSSDGLVNFWECEKHLSHGGVLRGH 366 (473)
Q Consensus 290 ~l~s~~-~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~ 366 (473)
.|+... .. +.|..+++.... ........-.....|+++|++..|+. -...+.|..+|+...... ......
T Consensus 215 ~ly~td~~~~~~I~r~~~dG~~------~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~~~ 287 (386)
T 3v65_B 215 TIYWTDWGNTPRIEASSMDGSG------RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK-AVISQG 287 (386)
T ss_dssp EEEEEECSSSCEEEEEETTSCS------CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCE-EEECSS
T ss_pred eEEEeccCCCCEEEEEeCCCCC------cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeE-EEEECC
Confidence 554443 33 677777765211 11111222345789999986655554 455678999998753221 122212
Q ss_pred cceEEEEEec-CCEEEEEeCCCcEEEEecCCCC
Q 012007 367 KMAVLCLAAA-GNLVFSGSADRNICLWRREESG 398 (473)
Q Consensus 367 ~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~ 398 (473)
......++.+ +.++++-...+.|..++..++.
T Consensus 288 ~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 288 LPHPFAITVFEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp CSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCceEEEEECCEEEEeeCCCCeEEEEECCCCc
Confidence 2223334434 5555566667889888865543
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0014 Score=59.11 Aligned_cols=209 Identities=8% Similarity=0.064 Sum_probs=121.5
Q ss_pred ccEEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE
Q 012007 162 GLVKAIIISGDSNKIFTGH-QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 240 (473)
.--.+++|.+....|+.++ ..|.|..|+...+..... ......... .....+..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g------------------------~~~~~~sG 67 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNG------------------------DGEQQMSG 67 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSS------------------------CCSEEEEE
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccC------------------------CCcceeeE
Confidence 3446788988666666666 689999999976543322 211100000 01113478
Q ss_pred EEE---cCCCCEEEEEe-------------CCCCEEEEEcC---CCeeeEEeec-------------CCCceeEEEEcCC
Q 012007 241 LSL---NAEQGLLYSGS-------------WDKTLKVWRIS---DCKCLESINA-------------HDDAINSVVAGFD 288 (473)
Q Consensus 241 l~~---~~~~~~l~s~s-------------~dg~v~vwd~~---~~~~~~~~~~-------------~~~~v~~l~~~~~ 288 (473)
|.| .+++.++++.. .+..|..+|+. +++.+..... -....+.++..++
T Consensus 68 l~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~ 147 (334)
T 2p9w_A 68 LSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD 147 (334)
T ss_dssp EEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTT
T ss_pred EEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCC
Confidence 999 68876666543 15779999999 7877665541 1124788999988
Q ss_pred C-EEEEEeCC-CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceee--
Q 012007 289 S-LVFTGSAD-GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLR-- 364 (473)
Q Consensus 289 ~-~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-- 364 (473)
| ..++++.. +.|..++.... ..................+.|+++|++..|++....|.|..+|+.+.........
T Consensus 148 GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~ 226 (334)
T 2p9w_A 148 GNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKIN 226 (334)
T ss_dssp SCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEES
T ss_pred CCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeeccccc
Confidence 8 55557766 77666665411 0000000000111223467899999999888887799999999885322001111
Q ss_pred c------CcceEEEEEecCCE-EEEEeCCCcEEEEecCC
Q 012007 365 G------HKMAVLCLAAAGNL-VFSGSADRNICLWRREE 396 (473)
Q Consensus 365 ~------~~~~v~~~~~~~~~-l~s~~~dg~i~iwd~~~ 396 (473)
+ ....+.....+|+. |++....+.+.+.+.+.
T Consensus 227 G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 227 GDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp SCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred CCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence 1 11222333457887 55555566666666554
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.0035 Score=57.47 Aligned_cols=270 Identities=6% Similarity=-0.023 Sum_probs=137.1
Q ss_pred ccEEEEEec--CCEEEEeeCCCcEEEeeC-Cccccc--c--ccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCee
Q 012007 124 GHIYSLAAS--GDLLYTGSDSKNIRVWKN-LKEFSG--F--KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNAS 196 (473)
Q Consensus 124 ~~V~~~~~~--g~~l~tg~~dg~i~vwd~-~~~~~~--~--~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 196 (473)
..+.++.+. +..++ .+.+|.|..... .+.-.. . ......+.+|.|.+ + .++.++.+|.|.. ..+.++.
T Consensus 36 ~~~~~v~~~~~~~~~~-~G~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g~i~~-S~DgG~t- 110 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWL-VGVNATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPPIMLH-TTDGGQS- 110 (327)
T ss_dssp SCEEEEEESSSSCEEE-EETTTEEEEESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETTEEEE-ESSTTSS-
T ss_pred CcEEEEEECCCCcEEE-EcCCCeEEEeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCCeEEE-ECCCCCC-
Confidence 457788774 45555 455676544321 111111 1 12345789999986 3 4444566665443 2222221
Q ss_pred eEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEe-ec
Q 012007 197 VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI-NA 275 (473)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~ 275 (473)
-...... . .+...+..+.+.+++..++++ .++.|.. ....++.-..+ ..
T Consensus 111 W~~~~~~-~---------------------------~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~ 160 (327)
T 2xbg_A 111 WSQIPLD-P---------------------------KLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQE 160 (327)
T ss_dssp CEECCCC-T---------------------------TCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECS
T ss_pred ceECccc-c---------------------------CCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecC
Confidence 1110000 0 012235566666666555544 4565432 11223322222 23
Q ss_pred CCCceeEEEEcCCCEEEEEeCCCcEEEE-eCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC
Q 012007 276 HDDAINSVVAGFDSLVFTGSADGTVKVW-RRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 276 ~~~~v~~l~~~~~~~l~s~~~dg~i~vw-d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 354 (473)
....+..+.+.+++.++..+.+|.+..- |- ++ ...... .......+..+++.+++.+++.+ .+|.+++.+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~--gG--~tW~~~--~~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D 233 (327)
T 2xbg_A 161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP--GQ--TAWEPH--NRTTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPD 233 (327)
T ss_dssp CCCCEEEEEECTTSCEEEEETTSSEEEEECT--TC--SSCEEE--ECCSSSCEEEEEECTTSCEEEEE-TTTEEEEEETT
T ss_pred CCcceEEEEEcCCCcEEEEECCCcEEEEeCC--CC--CceeEC--CCCCCCccceeEECCCCCEEEEe-CCceEEEecCC
Confidence 4457888899888855555566655433 31 01 112211 12345678899999988766554 57888777422
Q ss_pred Ccccccceeec---CcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccc
Q 012007 355 KHLSHGGVLRG---HKMAVLCLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYH 429 (473)
Q Consensus 355 ~~~~~~~~~~~---~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~ 429 (473)
.+..-...... +...+.++.+ ++.+++++ .+|.| ++..+.+..+..+.....+...+.++.|.+++
T Consensus 234 ~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~------- 304 (327)
T 2xbg_A 234 NSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD------- 304 (327)
T ss_dssp EEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-------
T ss_pred CCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-------
Confidence 11111111111 2223555554 45555554 47766 45555544454443222334568899997654
Q ss_pred cCCCccEEEEEeeCCCcEEEEE
Q 012007 430 QKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 430 ~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
.++.++.+|.|.-++
T Consensus 305 -------~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 305 -------QGFILGQKGILLRYV 319 (327)
T ss_dssp -------EEEEECSTTEEEEEC
T ss_pred -------ceEEEcCCceEEEEc
Confidence 466777899776665
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.0036 Score=58.00 Aligned_cols=196 Identities=10% Similarity=0.047 Sum_probs=114.3
Q ss_pred CCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcC-CC-EEEEEeCCCcEEEEeCcccCCCc
Q 012007 236 DAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAHDDAINSVVAGF-DS-LVFTGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~dg~i~vwd~~~~~~~~ 312 (473)
..+..++|++....|+... ..+.|..+++........+.........+++.+ .+ ++++-...+.|.+.++....
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--- 149 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--- 149 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc---
Confidence 4578899998666666554 567899999876554333333334557788875 34 44555667889999876221
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEe-CCC-CcEEEEecCCcccccceeec--CcceEEEEEecCCEEEEE-eCCC
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCG-SSD-GLVNFWECEKHLSHGGVLRG--HKMAVLCLAAAGNLVFSG-SADR 387 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~d-g~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~s~-~~dg 387 (473)
..............++++|.+..|+.. ..+ +.|..+++...... ..... ....-+++++++..|+.+ ...+
T Consensus 150 ---~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~~~~~~~~PnGla~d~~~~~lY~aD~~~~ 225 (349)
T 3v64_C 150 ---RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-IIADTHLFWPNGLTIDYAGRRMYWVDAKHH 225 (349)
T ss_dssp ---CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-ESCCSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred ---eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE-EEEECCCCCcceEEEeCCCCEEEEEECCCC
Confidence 111122333567899999966555544 444 78888887653221 11111 112335566655555544 4567
Q ss_pred cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 388 NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
.|..+++..... ..+ +........+|++. .+. ++++-...+.|...+..++
T Consensus 226 ~I~~~~~dG~~~-~~~--~~~~~~~P~giav~-~~~-------------ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 226 VIERANLDGSHR-KAV--ISQGLPHPFAITVF-EDS-------------LYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp EEEEEETTSCSC-EEE--ECSSCSSEEEEEEE-TTE-------------EEEEETTTTEEEEEETTTC
T ss_pred EEEEEeCCCCce-EEE--EeCCCCCceEEEEE-CCE-------------EEEecCCCCeEEEEEccCC
Confidence 899999876322 222 22223445778884 333 5666656777777774443
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00033 Score=60.44 Aligned_cols=191 Identities=8% Similarity=0.078 Sum_probs=113.8
Q ss_pred cceeeeeeeccc--EEEEEecCCEEEEe-eCC--CcEEEeeCC--ccccccccCcccE--EEEEEeCCCCEEEE-EeCCC
Q 012007 114 GLIGSIVRKEGH--IYSLAASGDLLYTG-SDS--KNIRVWKNL--KEFSGFKSNSGLV--KAIIISGDSNKIFT-GHQDG 183 (473)
Q Consensus 114 ~~~~~l~~h~~~--V~~~~~~g~~l~tg-~~d--g~i~vwd~~--~~~~~~~~h~~~V--~~l~~s~~~~~l~s-~~~dg 183 (473)
..+.++ .|... .-.+.+++..|+.+ +.+ ..|+++|.. +.+....-. ... ..+++. ++.|+. .-.++
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~-~~~fgeGi~~~--~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVP-PPYFGAGIVAW--RDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECC-TTCCEEEEEEE--TTEEEEEESSSS
T ss_pred EEEEEc-CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCC-CCcceeEEEEe--CCEEEEEEeeCC
Confidence 344454 56543 55788886655554 443 389999976 233333221 122 234443 445544 44688
Q ss_pred eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEE
Q 012007 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWR 263 (473)
Q Consensus 184 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd 263 (473)
.+.+||..+.+........ ..-..++ +++..|+.+..++.|.++|
T Consensus 86 ~v~v~D~~tl~~~~ti~~~---------------------------------~~Gwglt--~dg~~L~vSdgs~~l~~iD 130 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYP---------------------------------GEGWALT--SDDSHLYMSDGTAVIRKLD 130 (243)
T ss_dssp EEEEEETTTTEEEEEEECS---------------------------------SCCCEEE--ECSSCEEEECSSSEEEEEC
T ss_pred EEEEEECCcCcEEEEEeCC---------------------------------CCceEEe--eCCCEEEEECCCCeEEEEe
Confidence 9999999988766655432 1113344 4667777777788999999
Q ss_pred cCCCeeeEEeecCC-----CceeEEEEcCCCEEEEEe-CCCcEEEEeCcccCCCcceeeeeee-------ccCCccEEEE
Q 012007 264 ISDCKCLESINAHD-----DAINSVVAGFDSLVFTGS-ADGTVKVWRRELQGKGTKHCLAQVL-------LKHENAVTAL 330 (473)
Q Consensus 264 ~~~~~~~~~~~~~~-----~~v~~l~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~v~~l 330 (473)
..+.+.+..+.... ..++.+.+. ++.+++.. .+..|.+.|.+++.......+.... .....-.+.|
T Consensus 131 p~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGI 209 (243)
T 3mbr_X 131 PDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGI 209 (243)
T ss_dssp TTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEE
T ss_pred CCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEE
Confidence 99999888876432 345667765 55455444 5778999998754321111111000 1123457899
Q ss_pred EEccCCCEEEEeCC
Q 012007 331 AVNQESAVVYCGSS 344 (473)
Q Consensus 331 ~~~~~~~~l~~~~~ 344 (473)
+++|+++.|++.+.
T Consensus 210 A~d~~~~~lfVTGK 223 (243)
T 3mbr_X 210 AFDAEHDRLFVTGK 223 (243)
T ss_dssp EEETTTTEEEEEET
T ss_pred EEcCCCCEEEEECC
Confidence 99998766655543
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.0017 Score=59.55 Aligned_cols=230 Identities=9% Similarity=0.005 Sum_probs=119.0
Q ss_pred ccEEEEEecCCEEEEeeCCCcEEEeeC-Cccccc---cccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEE
Q 012007 124 GHIYSLAASGDLLYTGSDSKNIRVWKN-LKEFSG---FKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHK 199 (473)
Q Consensus 124 ~~V~~~~~~g~~l~tg~~dg~i~vwd~-~~~~~~---~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 199 (473)
..+.++.++++.++.++.+|.|..-+- .+.-.. ...+.+.+..|.+.+++..++.+ .+|.|.. ..+.++. -..
T Consensus 80 ~~~~~i~~~~~~~~~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~t-W~~ 156 (327)
T 2xbg_A 80 YRFNSVSFQGNEGWIVGEPPIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKN-WQA 156 (327)
T ss_dssp CEEEEEEEETTEEEEEEETTEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSS-EEE
T ss_pred ccEEEEEecCCeEEEEECCCeEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCC-CEE
Confidence 356677776555555566675544321 121111 11234557788887777555554 4554422 1112221 111
Q ss_pred eeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEE-EEc--CCCeeeEEeecC
Q 012007 200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKV-WRI--SDCKCLESINAH 276 (473)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~v-wd~--~~~~~~~~~~~~ 276 (473)
... .....+..+.+.+++.+++.+. +|.+.. +|- .+.+.+. ...
T Consensus 157 ~~~------------------------------~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~ 203 (327)
T 2xbg_A 157 LVQ------------------------------EAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHN--RTT 203 (327)
T ss_dssp EEC------------------------------SCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEE--CCS
T ss_pred eec------------------------------CCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECC--CCC
Confidence 100 1344678899999888776665 455444 332 2333332 234
Q ss_pred CCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeee-ccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCC
Q 012007 277 DDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVL-LKHENAVTALAVNQESAVVYCGSSDGLVNFWECEK 355 (473)
Q Consensus 277 ~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~ 355 (473)
...+..+.+.+++.++.++.+|.+.+.+...+ ......... ......+.++++.+++.+++++. +|.|. +....
T Consensus 204 ~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G---~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~-~S~Dg 278 (327)
T 2xbg_A 204 SRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNS---ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALL-CSQDG 278 (327)
T ss_dssp SSCEEEEEECTTSCEEEEETTTEEEEEETTEE---EEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEE-EESST
T ss_pred CCccceeEECCCCCEEEEeCCceEEEecCCCC---CeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEE-EeCCC
Confidence 56788888888887777778888877642211 111111111 11234588999998888777665 56663 33332
Q ss_pred cccccceee--cCcceEEEEEe-cCCEEEEEeCCCcEEEEec
Q 012007 356 HLSHGGVLR--GHKMAVLCLAA-AGNLVFSGSADRNICLWRR 394 (473)
Q Consensus 356 ~~~~~~~~~--~~~~~v~~~~~-~~~~l~s~~~dg~i~iwd~ 394 (473)
+..-..... .....+.++.+ ++..+++++.+|.|.-++-
T Consensus 279 G~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 279 GQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp TSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred CcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 221111110 11222333433 4556777778998776653
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.0021 Score=56.15 Aligned_cols=187 Identities=9% Similarity=0.023 Sum_probs=114.2
Q ss_pred ccCCeeEEEEcCCCCEEE-EEeCCCCEEEEEcCCCeeeEEeecC-CCceeEEEEcCCCEE-EEEeCCCcEEEEeCcccCC
Q 012007 234 HYDAVSCLSLNAEQGLLY-SGSWDKTLKVWRISDCKCLESINAH-DDAINSVVAGFDSLV-FTGSADGTVKVWRRELQGK 310 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~-s~s~dg~v~vwd~~~~~~~~~~~~~-~~~v~~l~~~~~~~l-~s~~~dg~i~vwd~~~~~~ 310 (473)
-.+.+..++|+|+++.|+ +...++.|...|.. ++.++.+... ......|++.+++.+ ++.-.++.+.++++.....
T Consensus 25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC
T ss_pred cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe
Confidence 445799999999776555 46778889999987 8888877532 246778888888855 4444677888888764331
Q ss_pred Ccceeeee-e--eccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCc--ccccceee---------cCcceEEEEEec
Q 012007 311 GTKHCLAQ-V--LLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH--LSHGGVLR---------GHKMAVLCLAAA 376 (473)
Q Consensus 311 ~~~~~~~~-~--~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~---------~~~~~v~~~~~~ 376 (473)
........ . ....+.....|+|+|.++.|+++.......+|.+... ........ -......++.+.
T Consensus 104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~ 183 (255)
T 3qqz_A 104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQ 183 (255)
T ss_dssp EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETT
T ss_pred eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCC
Confidence 00001111 0 1234566799999999877777766555556555410 00011110 112233444444
Q ss_pred -CCEEEEEeCCCcEEEEecCCCCceeEEEEec-CCC------CceeEEEEecCCC
Q 012007 377 -GNLVFSGSADRNICLWRREESGAHSCLAVLT-GHT------GPVKCLAVEEDRD 423 (473)
Q Consensus 377 -~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~h~------~~V~~l~~~~~~~ 423 (473)
+.+++.....+.|.++|... . ......+. +.. ..--.|+|.+++.
T Consensus 184 tg~lliLS~~s~~L~~~d~~g-~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ 236 (255)
T 3qqz_A 184 KNTLLVLSHESRALQEVTLVG-E-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN 236 (255)
T ss_dssp TTEEEEEETTTTEEEEECTTC-C-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred CCeEEEEECCCCeEEEEcCCC-C-EEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence 66777777788899999775 2 22223333 221 2458899999987
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00043 Score=68.90 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=23.6
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCeeeEEee
Q 012007 173 SNKIFTGHQDGKIRIWKVSRKNASVHKRV 201 (473)
Q Consensus 173 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 201 (473)
+..|+.++.|+.|..+|..+++..-....
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 44788889999999999999987765543
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0061 Score=57.57 Aligned_cols=226 Identities=13% Similarity=0.077 Sum_probs=130.1
Q ss_pred EEEEeeCCCcEEEeeCCcc-ccccccCcccEEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCe--eeEEeecccccccee
Q 012007 135 LLYTGSDSKNIRVWKNLKE-FSGFKSNSGLVKAIIISGDSNKIFTGH-QDGKIRIWKVSRKNA--SVHKRVGSLPTFKDY 210 (473)
Q Consensus 135 ~l~tg~~dg~i~vwd~~~~-~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~ 210 (473)
+|+.+.. ..|+..++... ...+......+..|+|++.+..|+-.. ..+.|+.+++..... .....+.
T Consensus 85 ~ll~~~~-~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~-------- 155 (400)
T 3p5b_L 85 YLFFTNR-HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-------- 155 (400)
T ss_dssp EEEEEET-TEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC--------
T ss_pred eeEEecc-ceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe--------
Confidence 4444443 56777775532 233333456788999998766666554 467888888865321 0000000
Q ss_pred EeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEE-EeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC-
Q 012007 211 VKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYS-GSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD- 288 (473)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s-~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~- 288 (473)
........|++.+.+..|+. -...+.|.+.++........+.........|++.|.
T Consensus 156 ----------------------~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~ 213 (400)
T 3p5b_L 156 ----------------------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH 213 (400)
T ss_dssp ----------------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTT
T ss_pred ----------------------CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEeccc
Confidence 12345678899885444544 456678999998755444444444456788999874
Q ss_pred CEEEEEeC--CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe-CCCCcEEEEecCCcccccceeec
Q 012007 289 SLVFTGSA--DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG-SSDGLVNFWECEKHLSHGGVLRG 365 (473)
Q Consensus 289 ~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~ 365 (473)
+.|+.... .+.|...++.... . .......-.....|++++++..|+.+ ...+.|..+|+...... .....
T Consensus 214 g~ly~td~~~~~~I~~~~~dG~~---~---~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~~ 286 (400)
T 3p5b_L 214 GFMYWTDWGTPAKIKKGGLNGVD---I---YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILED 286 (400)
T ss_dssp TEEEEEECSSSCCEEEEETTSCS---C---EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCE-EEEEC
T ss_pred CeEEEEeCCCCCEEEEEeCCCCc---c---EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccE-EEEeC
Confidence 55555442 3678888775211 1 11112233567899999877666655 45678999998753222 22221
Q ss_pred --CcceEEEEEecC-CEEEEEeCCCcEEEEecCCCC
Q 012007 366 --HKMAVLCLAAAG-NLVFSGSADRNICLWRREESG 398 (473)
Q Consensus 366 --~~~~v~~~~~~~-~~l~s~~~dg~i~iwd~~~~~ 398 (473)
.......++.++ .++++-...+.|..++..++.
T Consensus 287 ~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 287 EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp SSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCC
T ss_pred CCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCC
Confidence 122334555554 455555666889999866643
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0037 Score=58.75 Aligned_cols=197 Identities=11% Similarity=0.065 Sum_probs=114.4
Q ss_pred cCCeeEEEEcCCCCEEEEE-eCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC-C-EEEEEeCCCcEEEEeCcccCCC
Q 012007 235 YDAVSCLSLNAEQGLLYSG-SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-S-LVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 235 ~~~v~~l~~~~~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~-~-~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
...+..++|++.+..|+.. ...+.|..+++........+.........+++.+. + ++++-...+.|.+.++....
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-- 192 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-- 192 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS--
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc--
Confidence 3457889999866655555 45678999998766544433333344567777753 4 44555567788888775211
Q ss_pred cceeeeeeeccCCccEEEEEEccCCCEEEEeC-CC-CcEEEEecCCcccccceeecCc--ceEEEEEecCCEEEE-EeCC
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQESAVVYCGS-SD-GLVNFWECEKHLSHGGVLRGHK--MAVLCLAAAGNLVFS-GSAD 386 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~d-g~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~l~s-~~~d 386 (473)
..............|+++|.+..|+... .+ +.|..+++...... ......- ..-+++++++..|+. -...
T Consensus 193 ----~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~~~~~~~~PnGlavd~~~~~lY~aD~~~ 267 (386)
T 3v65_B 193 ----RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-IIADTHLFWPNGLTIDYAGRRMYWVDAKH 267 (386)
T ss_dssp ----CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEECSSCSCEEEEEEEGGGTEEEEEETTT
T ss_pred ----eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE-EEEECCCCCeeeEEEeCCCCEEEEEECCC
Confidence 1111222335678999998766555543 34 67888887653221 1111111 233566655555544 4556
Q ss_pred CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 387 RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 387 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
+.|..+++..... ..+ +........+|++.. +. ++++-...+.|..++..++
T Consensus 268 ~~I~~~d~dG~~~-~~~--~~~~~~~P~giav~~-~~-------------ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 268 HVIERANLDGSHR-KAV--ISQGLPHPFAITVFE-DS-------------LYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp TEEEEECTTSCSC-EEE--ECSSCSSEEEEEEET-TE-------------EEEEETTTTEEEEEETTTC
T ss_pred CEEEEEeCCCCee-EEE--EECCCCCceEEEEEC-CE-------------EEEeeCCCCeEEEEECCCC
Confidence 7899999875322 212 222234457788843 33 5666666778888875444
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0021 Score=61.45 Aligned_cols=153 Identities=3% Similarity=-0.012 Sum_probs=86.8
Q ss_pred cEEEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE
Q 012007 163 LVKAIIISGD--SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 163 ~V~~l~~s~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 240 (473)
....|+|+++ +..|+.+...+.|+.+|..++...... ........
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~---------------------------------~~~~~P~g 186 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT---------------------------------TNIGQCAD 186 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC---------------------------------CCCSCEEE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee---------------------------------cCCCCccE
Confidence 4578999984 445666555588999998766532211 12345789
Q ss_pred EEEcCCCCEEEEEeCCC----C-EEEEEcCCCee-eEEeecCCCceeEEEEcC-CCEEEEE-eCCCcEEEEeCcccCCCc
Q 012007 241 LSLNAEQGLLYSGSWDK----T-LKVWRISDCKC-LESINAHDDAINSVVAGF-DSLVFTG-SADGTVKVWRRELQGKGT 312 (473)
Q Consensus 241 l~~~~~~~~l~s~s~dg----~-v~vwd~~~~~~-~~~~~~~~~~v~~l~~~~-~~~l~s~-~~dg~i~vwd~~~~~~~~ 312 (473)
|+++++++ |+.+...+ . +...+...+.. ...+. .......+++.+ ++.|+.+ ..++.|+.+|...+..
T Consensus 187 iavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~-- 262 (433)
T 4hw6_A 187 VNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL-- 262 (433)
T ss_dssp EEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE--
T ss_pred EEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE--
Confidence 99999999 55555422 1 33333221111 01111 223456678888 6655544 4567888888752211
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEE-EEeCCCCcEEEEecC
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVV-YCGSSDGLVNFWECE 354 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~~~dg~i~iwd~~ 354 (473)
...+ .. ......-..|+|+|++++| ++-...+.|+.+++.
T Consensus 263 ~~~~-~~-~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 263 TEEE-VM-MDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp EEEE-EE-CSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred EEEE-ec-cCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 0011 11 1112223479999999854 455567889998765
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0052 Score=55.97 Aligned_cols=219 Identities=9% Similarity=0.021 Sum_probs=124.6
Q ss_pred CcEEEeeCCcc---ccccccCcccEEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCc
Q 012007 143 KNIRVWKNLKE---FSGFKSNSGLVKAIIISGDSNKIFTG-HQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPK 218 (473)
Q Consensus 143 g~i~vwd~~~~---~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (473)
..|+..++... ..........+.+++|.+.+..|+-+ ...+.|..++............
T Consensus 13 ~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~----------------- 75 (318)
T 3sov_A 13 RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV----------------- 75 (318)
T ss_dssp EEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE-----------------
T ss_pred CeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc-----------------
Confidence 46777776532 11122223456789999865555544 4567888888876532111100
Q ss_pred ceEEEeecceeeEeeccCCeeEEEEcCCCCEEE-EEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC-CEEEEEeC
Q 012007 219 NYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLY-SGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSA 296 (473)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~-~~l~s~~~ 296 (473)
........+++.+.+..|+ +-...+.|.++++........+.........+++.|. +.|+....
T Consensus 76 --------------~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~ 141 (318)
T 3sov_A 76 --------------SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW 141 (318)
T ss_dssp --------------ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEEC
T ss_pred --------------CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence 1223456788887555454 4445678999998654332223344456788898875 56655543
Q ss_pred --CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe-CCCCcEEEEecCCcccccceeecCcceEEEE
Q 012007 297 --DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG-SSDGLVNFWECEKHLSHGGVLRGHKMAVLCL 373 (473)
Q Consensus 297 --dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 373 (473)
.+.|...++.... .. ......-.....|++++++..|+.+ ...+.|..+|+..... .....+.......+
T Consensus 142 ~~~~~I~r~~~dG~~---~~---~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~gl 214 (318)
T 3sov_A 142 GEVPKIERAGMDGSS---RF---IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVVKGSLPHPFAL 214 (318)
T ss_dssp SSSCEEEEEETTSCS---CE---EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSCCSCEEEE
T ss_pred CCCCEEEEEEcCCCC---eE---EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-EEEecCCCCCceEE
Confidence 5677777765211 11 1111223456899999966655554 5567899999874222 11222222233444
Q ss_pred EecC-CEEEEEeCCCcEEEEecCCCCc
Q 012007 374 AAAG-NLVFSGSADRNICLWRREESGA 399 (473)
Q Consensus 374 ~~~~-~~l~s~~~dg~i~iwd~~~~~~ 399 (473)
+.++ .++++-...+.|..++..++..
T Consensus 215 av~~~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 215 TLFEDILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EEETTEEEEEETTTTEEEEEETTTCCS
T ss_pred EEeCCEEEEEecCCCeEEEEECCCCCc
Confidence 5454 4455555668899999876443
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0078 Score=54.79 Aligned_cols=218 Identities=12% Similarity=0.067 Sum_probs=123.1
Q ss_pred CcEEEeeCCcc-ccccccCcccEEEEEEeCCCCEEEEEe-CCCeEEEEeCCCC---CeeeEEeeccccccceeEeecCCC
Q 012007 143 KNIRVWKNLKE-FSGFKSNSGLVKAIIISGDSNKIFTGH-QDGKIRIWKVSRK---NASVHKRVGSLPTFKDYVKSSVNP 217 (473)
Q Consensus 143 g~i~vwd~~~~-~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 217 (473)
..|+..|+... ...+......+..++|++++..|+.+. .++.|..+++... ...... ..
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~-~~--------------- 73 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV-IS--------------- 73 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE-EC---------------
T ss_pred CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE-Ee---------------
Confidence 45777775532 222223345678999998766665554 4688999988752 110000 00
Q ss_pred cceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE-eCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcC-CCEEEEEe
Q 012007 218 KNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTLKVWRISDCKCLESINAHDDAINSVVAGF-DSLVFTGS 295 (473)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~ 295 (473)
........+++++.+..|+.+ ...+.|.+.++........+.........+++.| ++.|+...
T Consensus 74 ---------------~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d 138 (316)
T 1ijq_A 74 ---------------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTD 138 (316)
T ss_dssp ---------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEE
T ss_pred ---------------CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEc
Confidence 012345788898755555544 5678899999865433333333445678899987 45555544
Q ss_pred CC--CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe-CCCCcEEEEecCCcccccceeec--CcceE
Q 012007 296 AD--GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG-SSDGLVNFWECEKHLSHGGVLRG--HKMAV 370 (473)
Q Consensus 296 ~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~--~~~~v 370 (473)
.. +.|...++... ... ......-.....|++++++..|+.+ ...+.|..+|+..... ...... .....
T Consensus 139 ~~~~~~I~~~~~dG~----~~~--~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~~~~~~~P 211 (316)
T 1ijq_A 139 WGTPAKIKKGGLNGV----DIY--SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHP 211 (316)
T ss_dssp CSSSCEEEEEETTSC----CEE--EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSE
T ss_pred cCCCCeEEEEcCCCC----CeE--EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEeecCCccCCc
Confidence 43 67877776421 111 1111233567899999876665554 4567899999875322 112221 11222
Q ss_pred EEEEec-CCEEEEEeCCCcEEEEecCCCC
Q 012007 371 LCLAAA-GNLVFSGSADRNICLWRREESG 398 (473)
Q Consensus 371 ~~~~~~-~~~l~s~~~dg~i~iwd~~~~~ 398 (473)
..++.+ +.++++-...+.|..++..++.
T Consensus 212 ~giav~~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 212 FSLAVFEDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEECCEEEEEECCCCeEEEEeCCCCc
Confidence 344444 4455555567789999876643
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0097 Score=54.18 Aligned_cols=200 Identities=11% Similarity=0.049 Sum_probs=114.1
Q ss_pred cCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCC----CeeeEEeecCCCceeEEEEcC-CC-EEEEEeCCCcEEEEeCcc
Q 012007 235 YDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISD----CKCLESINAHDDAINSVVAGF-DS-LVFTGSADGTVKVWRREL 307 (473)
Q Consensus 235 ~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~----~~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~dg~i~vwd~~~ 307 (473)
......++|++.++.|+.+. .++.|..+++.. ......+.........+++.+ ++ ++++-...+.|.++++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 34577899998766665554 568899999875 222222332334567888864 44 445556678999998752
Q ss_pred cCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC-C-CcEEEEecCCcccccceeec--CcceEEEEEecCCEEEEE
Q 012007 308 QGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-D-GLVNFWECEKHLSHGGVLRG--HKMAVLCLAAAGNLVFSG 383 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-d-g~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~s~ 383 (473)
.. . .............++++|.+..|+.+.. . +.|..+++...... ..... ....-+++++++..|+.+
T Consensus 109 ~~---~---~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~-~~~~~~~~~P~gla~d~~~~~lY~~ 181 (316)
T 1ijq_A 109 VK---R---KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVTENIQWPNGITLDLLSGRLYWV 181 (316)
T ss_dssp SS---E---EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-EEECSSCSCEEEEEEETTTTEEEEE
T ss_pred Cc---e---EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE-EEEECCCCCceEEEEeccCCEEEEE
Confidence 11 1 1111223356789999996665555443 2 68888887643221 11111 122235566656655554
Q ss_pred -eCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 384 -SADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 384 -~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
...+.|..+|+.... ...+............|++.. +. ++++-...+.|..++..++.
T Consensus 182 D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~~-~~-------------ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 182 DSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE-DK-------------VFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp ETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEET-TE-------------EEEEETTTTEEEEEETTTCC
T ss_pred ECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEEC-CE-------------EEEEECCCCeEEEEeCCCCc
Confidence 456789999987532 233332222223456788753 33 56666667788888865543
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0039 Score=59.55 Aligned_cols=147 Identities=8% Similarity=0.003 Sum_probs=87.7
Q ss_pred EEEe-cCCEEEEeeCCCcEEEeeCCc-cccccccCcccEEEEEEeCCCCEEEEEeCC-C----eEEEEeCCCCCeeeEEe
Q 012007 128 SLAA-SGDLLYTGSDSKNIRVWKNLK-EFSGFKSNSGLVKAIIISGDSNKIFTGHQD-G----KIRIWKVSRKNASVHKR 200 (473)
Q Consensus 128 ~~~~-~g~~l~tg~~dg~i~vwd~~~-~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d-g----~i~vwd~~~~~~~~~~~ 200 (473)
++.+ ++..|+.+...+.|+.+|... .+..+.........|+|++++++|+.+... + .+.+.+. .+.......
T Consensus 143 avdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~ 221 (430)
T 3tc9_A 143 SFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITE 221 (430)
T ss_dssp EEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEE
T ss_pred EECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeee
Confidence 4444 244555555547888888763 344444455668899999999967666542 1 2222332 221110000
Q ss_pred eccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEeec-CCC
Q 012007 201 VGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINA-HDD 278 (473)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~ 278 (473)
+........++++| ++.++++-..++.|..++...+........ ...
T Consensus 222 -------------------------------l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~ 270 (430)
T 3tc9_A 222 -------------------------------LTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSG 270 (430)
T ss_dssp -------------------------------EEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred -------------------------------eccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence 00223456788999 666555555678899999987664332222 223
Q ss_pred ceeEEEEcCCC--EEEEEeCCCcEEEEeCc
Q 012007 279 AINSVVAGFDS--LVFTGSADGTVKVWRRE 306 (473)
Q Consensus 279 ~v~~l~~~~~~--~l~s~~~dg~i~vwd~~ 306 (473)
....+++++++ ++++-...+.|..++..
T Consensus 271 ~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 271 WEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 56789999988 34444567889888765
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.011 Score=54.66 Aligned_cols=226 Identities=15% Similarity=0.118 Sum_probs=115.4
Q ss_pred cEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEE
Q 012007 163 LVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS 242 (473)
Q Consensus 163 ~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 242 (473)
.-..|+|.|+|++++ +..+|.|++++ .++......+. . ..........|+
T Consensus 32 ~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~---v------------------------~~~g~~~p~gia 81 (352)
T 2ism_A 32 VPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELS---V------------------------YHRGESGLLGLA 81 (352)
T ss_dssp CEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECC---C------------------------CCSTTCSEEEEE
T ss_pred CceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecce---E------------------------eecCCCCceeEE
Confidence 467999999998555 46779999998 33221111110 0 001234678899
Q ss_pred EcCC---CCEEEEEeCC------CCEEEEEcCCCe-----ee-EEee---cCCCceeEEEEcCCCEEEEEeCC-------
Q 012007 243 LNAE---QGLLYSGSWD------KTLKVWRISDCK-----CL-ESIN---AHDDAINSVVAGFDSLVFTGSAD------- 297 (473)
Q Consensus 243 ~~~~---~~~l~s~s~d------g~v~vwd~~~~~-----~~-~~~~---~~~~~v~~l~~~~~~~l~s~~~d------- 297 (473)
|+|+ +..|+++... +.|..++...+. .+ ..+. ........+++.+++.|+.+..+
T Consensus 82 ~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~ 161 (352)
T 2ism_A 82 LHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELA 161 (352)
T ss_dssp ECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGG
T ss_pred ECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccc
Confidence 9998 6666665532 568888876431 11 2233 11123468899999955554322
Q ss_pred -------CcEEEEeCcccCCCcc---------eeeeeeeccCCccEEEEEEcc-CCCEEEEeCCCCc--------EEEEe
Q 012007 298 -------GTVKVWRRELQGKGTK---------HCLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGL--------VNFWE 352 (473)
Q Consensus 298 -------g~i~vwd~~~~~~~~~---------~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~--------i~iwd 352 (473)
|.|.-++.. +.... ........++ .....++|+| ++.++++-..... |.+..
T Consensus 162 ~d~~~~~g~I~ri~~d--G~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~ 238 (352)
T 2ism_A 162 QDLASLGGKILRLTPE--GEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV 238 (352)
T ss_dssp GCTTCSSSEEEEECTT--SSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEEC
T ss_pred cCCCCCceEEEEEcCC--CCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec
Confidence 445555543 11000 0011111222 2356789999 5665554332222 44332
Q ss_pred cCCc---------------ccccceeecCcceEEEEE-ecCCEEEEEeCCCcEEEEecCCCCc----eeEEEEecCCCCc
Q 012007 353 CEKH---------------LSHGGVLRGHKMAVLCLA-AAGNLVFSGSADRNICLWRREESGA----HSCLAVLTGHTGP 412 (473)
Q Consensus 353 ~~~~---------------~~~~~~~~~~~~~v~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~h~~~ 412 (473)
.... ......+..|. ....+. ++|.++++.-..+.|...++..... ......+. -...
T Consensus 239 ~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~-ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~-~~~r 316 (352)
T 2ism_A 239 PGGNYGWPRVVGRGNDPRYRDPLYFWPQGF-PPGNLAFFRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS-GFGR 316 (352)
T ss_dssp TTCBCCTTTCCSCCCCTTSCCCSEECTTCC-CEEEEEEETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE-SSCC
T ss_pred cCCcCCCCcccCCCCCCCCcCCeEecCCCC-CCcceEEECCEEEEEECCCCEEEEEEECCCCcceeecchheecc-cCCC
Confidence 1110 01111111222 222333 5677776666677788887765321 01111222 2357
Q ss_pred eeEEEEecCCC
Q 012007 413 VKCLAVEEDRD 423 (473)
Q Consensus 413 V~~l~~~~~~~ 423 (473)
+..+++.||+.
T Consensus 317 p~~v~~~pdG~ 327 (352)
T 2ism_A 317 LREVQVGPDGA 327 (352)
T ss_dssp EEEEEECTTSC
T ss_pred eeEEEECCCCc
Confidence 89999999987
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.015 Score=55.91 Aligned_cols=251 Identities=8% Similarity=-0.009 Sum_probs=137.3
Q ss_pred cEEEEEEeC-CCCEEEEEeC-CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE
Q 012007 163 LVKAIIISG-DSNKIFTGHQ-DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240 (473)
Q Consensus 163 ~V~~l~~s~-~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 240 (473)
....|+|.| ++..|+.+.. .+.|++.|+..+.......... ........
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~-----------------------------~~~~~p~~ 190 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINT-----------------------------IPTNRIRS 190 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTT-----------------------------SSCSBEEE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCc-----------------------------cccCCCcE
Confidence 356899998 3445555544 4678888888766543322110 02235788
Q ss_pred EEE-------cCCCCEEEEEeCCC-C------EEEEEcCC-Ceee-----EEeecCCCceeEEEEcCC-C-EEEEEeCCC
Q 012007 241 LSL-------NAEQGLLYSGSWDK-T------LKVWRISD-CKCL-----ESINAHDDAINSVVAGFD-S-LVFTGSADG 298 (473)
Q Consensus 241 l~~-------~~~~~~l~s~s~dg-~------v~vwd~~~-~~~~-----~~~~~~~~~v~~l~~~~~-~-~l~s~~~dg 298 (473)
|+| +++++.|+++...+ . |.+++... +... ..+... .....++++|+ + ++++-..++
T Consensus 191 ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g 269 (496)
T 3kya_A 191 IAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKG 269 (496)
T ss_dssp EEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTT
T ss_pred EEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCC
Confidence 999 99999777777654 2 66665333 2221 122211 23456777884 4 455666778
Q ss_pred cEEEEeCc-------ccCCCc----c----eeeeeeeccCCccEEEEEEccCCCEEE-EeCCCCcEEEEecCCcc-cc--
Q 012007 299 TVKVWRRE-------LQGKGT----K----HCLAQVLLKHENAVTALAVNQESAVVY-CGSSDGLVNFWECEKHL-SH-- 359 (473)
Q Consensus 299 ~i~vwd~~-------~~~~~~----~----~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~~~dg~i~iwd~~~~~-~~-- 359 (473)
.|..+|+. .+.... . ..... ..........|+|+|++++|+ +-.....|+.++..... .+
T Consensus 270 ~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~-~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~ 348 (496)
T 3kya_A 270 QVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLF-TIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFIT 348 (496)
T ss_dssp EEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEE-ECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECC
T ss_pred EEEEEecccccccccCceeecccccccccccceeE-ecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecc
Confidence 89999986 221100 0 00111 112234568999999999544 44567788886654211 00
Q ss_pred cceeecC------------------cceEEEEE-------ecCCEEEEEeCCCcEEEEecCCCCceeEEEEe--------
Q 012007 360 GGVLRGH------------------KMAVLCLA-------AAGNLVFSGSADRNICLWRREESGAHSCLAVL-------- 406 (473)
Q Consensus 360 ~~~~~~~------------------~~~v~~~~-------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------- 406 (473)
...+.+. .....++. .++.++++=.....|+.++... . ...+.-.
T Consensus 349 ~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G-~-v~TiaG~g~~~~~~~ 426 (496)
T 3kya_A 349 PYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEG-I-VSTYAGRGASTSLAD 426 (496)
T ss_dssp CEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTC-B-EEEEEESCTTHHHHH
T ss_pred cEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCC-C-EEEEecccccccccC
Confidence 0111111 11123343 3456666666778899988432 1 1111110
Q ss_pred ---cCC----------CCceeEEEEecC-CCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCc
Q 012007 407 ---TGH----------TGPVKCLAVEED-RDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDL 459 (473)
Q Consensus 407 ---~~h----------~~~V~~l~~~~~-~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~ 459 (473)
.+. -.....|++.++ +. ++++=...+.|+.+++.......
T Consensus 427 ~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~-------------lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 427 GNQWGTDDGDLREVARFRDVSGLVYDDVKEM-------------FYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp SCSCCCCCEETTTTCCCSSEEEEEEETTTTE-------------EEEEETTTTEEEEEEECCCC---
T ss_pred ccccccCCCCchhhhhcCCCcEEEEECCCCE-------------EEEEeCCCCEEEEEECCCCcccc
Confidence 011 123568899886 54 55555567889999987665433
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.86 E-value=0.019 Score=54.10 Aligned_cols=201 Identities=11% Similarity=0.049 Sum_probs=116.7
Q ss_pred ccCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCC----eeeEEeecCCCceeEEEEcC-CC-EEEEEeCCCcEEEEeCc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDC----KCLESINAHDDAINSVVAGF-DS-LVFTGSADGTVKVWRRE 306 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~----~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~dg~i~vwd~~ 306 (473)
....+..|+|++.+..|+.+. ..+.|+.+++... .....+.........+++.. .+ ++++-...+.|.+.+++
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 445678999998666666664 5677888888652 22233333445667888875 44 45555667889888875
Q ss_pred ccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC--CCcEEEEecCCcccccceeecC--cceEEEEEecCCEEEE
Q 012007 307 LQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS--DGLVNFWECEKHLSHGGVLRGH--KMAVLCLAAAGNLVFS 382 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~l~s 382 (473)
... ..............|+++|.+.+|+.... .+.|...++...... ...... ...-+++++++..|+.
T Consensus 190 g~~------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~-~~~~~~l~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 190 GVK------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVTENIQWPNGITLDLLSGRLYW 262 (400)
T ss_dssp TCS------EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE-EEECSSCSCEEEEEEETTTTEEEE
T ss_pred CCc------eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE-EEEECCCCceEEEEEEeCCCEEEE
Confidence 211 11112223445789999997666655542 478888888753222 122211 2223556655666655
Q ss_pred E-eCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 383 G-SADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 383 ~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
+ ...+.|..+|++.... ..+....+......+|++..+ . ++++-...+.|..++..++.
T Consensus 263 aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~~~-~-------------lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED-K-------------VFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp EETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEETT-E-------------EEEEESSSCSEEEEESSSCC
T ss_pred EECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEeCC-E-------------EEEecCCCCeEEEEEcCCCC
Confidence 5 4567899999876332 223222222334457777433 2 56666667788888865554
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.03 Score=57.59 Aligned_cols=226 Identities=14% Similarity=0.081 Sum_probs=128.6
Q ss_pred EEEEeeCCCcEEEeeCCc-cccccccCcccEEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCCe--eeEEeecccccccee
Q 012007 135 LLYTGSDSKNIRVWKNLK-EFSGFKSNSGLVKAIIISGDSNKIFTG-HQDGKIRIWKVSRKNA--SVHKRVGSLPTFKDY 210 (473)
Q Consensus 135 ~l~tg~~dg~i~vwd~~~-~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~ 210 (473)
+|+.+. ...|+..++.. ....+......+..|+|.+.+..|+.. ...+.|+.+++..... .....+.
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~-------- 467 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-------- 467 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC--------
T ss_pred cccccc-ccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe--------
Confidence 343333 34677776542 233333345667899999865555544 4467888888865321 0000000
Q ss_pred EeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE-eCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC-
Q 012007 211 VKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD- 288 (473)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~- 288 (473)
........|++.+.+..|+.+ ...+.|.+.++........+.........|++.+.
T Consensus 468 ----------------------~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~ 525 (791)
T 3m0c_C 468 ----------------------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH 525 (791)
T ss_dssp ----------------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTT
T ss_pred ----------------------cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCC
Confidence 123456678998877655555 45678999998754443334444456889999876
Q ss_pred CEEEEEeC--CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe-CCCCcEEEEecCCcccccceeec
Q 012007 289 SLVFTGSA--DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG-SSDGLVNFWECEKHLSHGGVLRG 365 (473)
Q Consensus 289 ~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~ 365 (473)
+.|+.... .+.|...++.... ........-.....|++++.+..|+.+ ...+.|..+++...... .+...
T Consensus 526 g~LYwtD~g~~~~I~~~~~dG~~------~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~-~v~~~ 598 (791)
T 3m0c_C 526 GFMYWTDWGTPAKIKKGGLNGVD------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILED 598 (791)
T ss_dssp TEEEEEECSSSCEEEEEETTSCC------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEEC
T ss_pred CCEEEecCCCCCeEEEEecCCCc------eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE-EEecC
Confidence 56655543 2677777765211 111222233568899999876666555 45568999998753322 22222
Q ss_pred --CcceEEEEEecCCEEEEE-eCCCcEEEEecCCCC
Q 012007 366 --HKMAVLCLAAAGNLVFSG-SADRNICLWRREESG 398 (473)
Q Consensus 366 --~~~~v~~~~~~~~~l~s~-~~dg~i~iwd~~~~~ 398 (473)
.-.....++..+..|+.. ...+.|...+..++.
T Consensus 599 ~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 599 EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp TTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCc
Confidence 122334566565555555 455778888876643
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0083 Score=57.28 Aligned_cols=188 Identities=8% Similarity=0.015 Sum_probs=105.5
Q ss_pred CEEEEeeCCCcEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCCC----e-EEEEeCCCCCeeeEEeecccccc
Q 012007 134 DLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG----K-IRIWKVSRKNASVHKRVGSLPTF 207 (473)
Q Consensus 134 ~~l~tg~~dg~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg----~-i~vwd~~~~~~~~~~~~~~~~~~ 207 (473)
..|+.+...+.|+.+|.. ..+..+.........|+++++|+ |+.+...+ . +...+...... ..
T Consensus 153 g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~-~~--------- 221 (433)
T 4hw6_A 153 DDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFT-ER--------- 221 (433)
T ss_dssp CEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTC-CE---------
T ss_pred CEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCee-cc---------
Confidence 455555444889999873 44555544556689999999999 55444322 1 22222111100 00
Q ss_pred ceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEEe-ec-CCCceeEEE
Q 012007 208 KDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESI-NA-HDDAINSVV 284 (473)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~-~~~~v~~l~ 284 (473)
...........+++++ ++.+.++-..++.|+.+|..++.....+ .. ....-..++
T Consensus 222 ----------------------~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia 279 (433)
T 4hw6_A 222 ----------------------LSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIV 279 (433)
T ss_dssp ----------------------EEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEE
T ss_pred ----------------------ccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEE
Confidence 0001233456688999 5655555556778999998877653332 21 122234699
Q ss_pred EcCCC-EEE-EEeCCCcEEEEeCcccCCCc--ceeeeee-----------eccCCccEEEEEE---------ccCCCEEE
Q 012007 285 AGFDS-LVF-TGSADGTVKVWRRELQGKGT--KHCLAQV-----------LLKHENAVTALAV---------NQESAVVY 340 (473)
Q Consensus 285 ~~~~~-~l~-s~~~dg~i~vwd~~~~~~~~--~~~~~~~-----------~~~~~~~v~~l~~---------~~~~~~l~ 340 (473)
+++++ .|+ +-...+.|..++........ ....... ....-.....+++ .+++.+++
T Consensus 280 ~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyv 359 (433)
T 4hw6_A 280 WHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYF 359 (433)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEE
T ss_pred EeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEE
Confidence 99987 344 44556789888765211100 0000000 0011234677999 67777777
Q ss_pred EeCCCCcEEEEecC
Q 012007 341 CGSSDGLVNFWECE 354 (473)
Q Consensus 341 ~~~~dg~i~iwd~~ 354 (473)
+-...+.|+.++..
T Consensus 360 aD~~n~~I~~~~~~ 373 (433)
T 4hw6_A 360 CDRDSHTVRVLTPE 373 (433)
T ss_dssp EETTTTEEEEECTT
T ss_pred EECCCCEEEEECCC
Confidence 77778889999853
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.83 E-value=0.018 Score=52.43 Aligned_cols=196 Identities=10% Similarity=0.073 Sum_probs=114.7
Q ss_pred CeeEEEEcCCCCEEEEE-eCCCCEEEEEcCCCeee-EEeecCCCceeEEEEcC-CC-EEEEEeCCCcEEEEeCcccCCCc
Q 012007 237 AVSCLSLNAEQGLLYSG-SWDKTLKVWRISDCKCL-ESINAHDDAINSVVAGF-DS-LVFTGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~-s~dg~v~vwd~~~~~~~-~~~~~~~~~v~~l~~~~-~~-~l~s~~~dg~i~vwd~~~~~~~~ 312 (473)
....++|++.+..|+.. ...+.|..+++...... ..+.........+++.+ .+ ++++-...+.|.++++....
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--- 112 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL--- 112 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc---
Confidence 45688999865555554 45678999998765321 22222234566777775 44 44555667889999876211
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeC--CCCcEEEEecCCcccccceeec--CcceEEEEEecCCEEEEE-eCCC
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGS--SDGLVNFWECEKHLSHGGVLRG--HKMAVLCLAAAGNLVFSG-SADR 387 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~s~-~~dg 387 (473)
. .............++++|.+..|+... ..+.|..+++...... ..... ....-+++++++..|+.+ ...+
T Consensus 113 ~---~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~~~~~l~~Pnglavd~~~~~lY~aD~~~~ 188 (318)
T 3sov_A 113 R---KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF-IIINSEIYWPNGLTLDYEEQKLYWADAKLN 188 (318)
T ss_dssp C---EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE-EEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred E---EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE-EEEECCCCCccEEEEeccCCEEEEEECCCC
Confidence 1 111223345678999999766665554 3578888887643221 11111 112335666655555544 4567
Q ss_pred cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 388 NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
.|..+++..... ..+. .+......++++..+ . ++++-...+.|..++..+++
T Consensus 189 ~I~~~d~dG~~~-~~~~--~~~~~~P~glav~~~-~-------------lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 189 FIHKSNLDGTNR-QAVV--KGSLPHPFALTLFED-I-------------LYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EEEEEETTSCSC-EEEE--CSCCSCEEEEEEETT-E-------------EEEEETTTTEEEEEETTTCC
T ss_pred EEEEEcCCCCce-EEEe--cCCCCCceEEEEeCC-E-------------EEEEecCCCeEEEEECCCCC
Confidence 899999875322 2222 223344577777543 2 56666667888888886554
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0075 Score=54.86 Aligned_cols=194 Identities=14% Similarity=0.178 Sum_probs=113.2
Q ss_pred CCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC----C----EEEEEeC---CCcEEEEeCcccCCCcce
Q 012007 246 EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD----S----LVFTGSA---DGTVKVWRRELQGKGTKH 314 (473)
Q Consensus 246 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~----~----~l~s~~~---dg~i~vwd~~~~~~~~~~ 314 (473)
...+++....++-+.+||+ +|+.++.+.. +.++.+..-++ + ++++... +++|.+|++..... ..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~--~l 113 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG--TL 113 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC--CE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC--ce
Confidence 4456676777888999999 8999988864 45666665543 1 2333333 57899997742111 11
Q ss_pred eeeee----eccCCccEEEEEE--ccC-CC-EEEEeCCCCcEEEEecCC---c----ccccceeecCcceEEEEEecCCE
Q 012007 315 CLAQV----LLKHENAVTALAV--NQE-SA-VVYCGSSDGLVNFWECEK---H----LSHGGVLRGHKMAVLCLAAAGNL 379 (473)
Q Consensus 315 ~~~~~----~~~~~~~v~~l~~--~~~-~~-~l~~~~~dg~i~iwd~~~---~----~~~~~~~~~~~~~v~~~~~~~~~ 379 (473)
..... +......+..+++ ++. +. ++++...+|.+..|++.. + +.......+....-+.+......
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGR 193 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTE
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCe
Confidence 11100 0011145666777 664 43 688888999999998832 1 11212222333333344455789
Q ss_pred EEEEeCCCcEEEEecCCCC--ceeEEEEec-CC-CCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 380 VFSGSADRNICLWRREESG--AHSCLAVLT-GH-TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 380 l~s~~~dg~i~iwd~~~~~--~~~~~~~~~-~h-~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
|+.+-++..|..++.+... ....+..+. ++ ...+..|++-+... ...++|+++=.+.++.+|+..
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~---------g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAAD---------GKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGG---------GCEEEEEEEGGGTEEEEEESS
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCC---------CCEEEEEEcCCCCEEEEEECC
Confidence 9999998666556644211 234555542 32 23688888854321 112356666567899999986
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.014 Score=53.17 Aligned_cols=192 Identities=11% Similarity=0.206 Sum_probs=109.6
Q ss_pred CCEEEEeeCCCcEEEeeCCcc-ccccccCcccEEEEEEeCC----CC---EEEEEe-C--CCeEEEEeCCCCCeeeEEee
Q 012007 133 GDLLYTGSDSKNIRVWKNLKE-FSGFKSNSGLVKAIIISGD----SN---KIFTGH-Q--DGKIRIWKVSRKNASVHKRV 201 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~~~-~~~~~~h~~~V~~l~~s~~----~~---~l~s~~-~--dg~i~vwd~~~~~~~~~~~~ 201 (473)
..+++.....+-+.|||+... +..+. .+.++.+..-|+ |+ ++++.. . +++|.+|++...... ...+
T Consensus 40 ~s~ii~t~k~~gL~Vydl~G~~l~~~~--~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i 116 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSLDGKMLHSYN--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSM 116 (355)
T ss_dssp GCEEEEEETTTEEEEEETTSCEEEEEC--CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEEC
T ss_pred ccEEEEEcCCCCEEEEcCCCcEEEEcc--CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeec
Confidence 345555556678999998633 33332 256677666553 22 223333 3 578999977422211 1111
Q ss_pred ccc--cccceeEeecCCCcceEEEeecceeeEeec-cCCeeEEEE--cCC-CC-EEEEEeCCCCEEEEEcC-------CC
Q 012007 202 GSL--PTFKDYVKSSVNPKNYVEVRRNRSVLKIRH-YDAVSCLSL--NAE-QG-LLYSGSWDKTLKVWRIS-------DC 267 (473)
Q Consensus 202 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~--~~~-~~-~l~s~s~dg~v~vwd~~-------~~ 267 (473)
... +. +. ...+..+++ ++. +. ++++...+|.+..|++. +.
T Consensus 117 ~~~~~pv--------------------------~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~ 170 (355)
T 3amr_A 117 TDPDHPI--------------------------ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISG 170 (355)
T ss_dssp SCTTSCE--------------------------ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEE
T ss_pred cccccCc--------------------------CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccc
Confidence 100 00 01 144556666 664 43 68888889999999983 34
Q ss_pred eeeEEeecCCCceeEEEEcCC-CEEEEEeCCCcEEEEeCcccCCCcceeeeeee-ccC-CccEEEEEEc--cCCC-EEEE
Q 012007 268 KCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVWRRELQGKGTKHCLAQVL-LKH-ENAVTALAVN--QESA-VVYC 341 (473)
Q Consensus 268 ~~~~~~~~~~~~v~~l~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~-~~~v~~l~~~--~~~~-~l~~ 341 (473)
+.++++... ..+..+...+. +.|+.+-.+..|..++.+.... .....+... .++ ...+..|++- ++++ +|++
T Consensus 171 ~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~-~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLiv 248 (355)
T 3amr_A 171 KKVRAFKMN-SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGG-SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMA 248 (355)
T ss_dssp EEEEEEECS-SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSC-SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEE
T ss_pred eEEEEecCC-CCcceEEEcCCCCeEEEecccceEEEEeCCcCCC-CCceEEEEecCCccccCcceEEEEecCCCCEEEEE
Confidence 667777754 45666666654 5999999986665555442221 111222222 122 2468888884 4555 5555
Q ss_pred eC-CCCcEEEEecCC
Q 012007 342 GS-SDGLVNFWECEK 355 (473)
Q Consensus 342 ~~-~dg~i~iwd~~~ 355 (473)
++ .+..+.+||.+.
T Consensus 249 SsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 249 SSQGNSSYAIYDRQG 263 (355)
T ss_dssp EEGGGTEEEEEESST
T ss_pred EcCCCCEEEEEECCC
Confidence 54 577999999863
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.054 Score=55.66 Aligned_cols=200 Identities=12% Similarity=0.044 Sum_probs=112.1
Q ss_pred ccCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCC----eeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDC----KCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRE 306 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~----~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~ 306 (473)
....+..|+|++....|+.+. ..+.|+.+++... .....+.........|++...+ ++++-...+.|.+.++.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 345677899998655555554 5577888888642 2233333344556778877554 55566667889999886
Q ss_pred ccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC--CCcEEEEecCCcccccceeecCcceE--EEEEecCCEEEE
Q 012007 307 LQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS--DGLVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFS 382 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s 382 (473)
... ..............|+++|.+.+|+.... .+.|...++...... ......-... +++.+.+..|+.
T Consensus 502 G~~------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~-~lv~~~l~~P~GLavD~~~~~LYw 574 (791)
T 3m0c_C 502 GVK------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVTENIQWPNGITLDLLSGRLYW 574 (791)
T ss_dssp SSS------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-EEECSSCSCEEEEEEETTTTEEEE
T ss_pred CCe------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE-EEEeCCCCCceEEEEecCCCeEEE
Confidence 211 11112233455889999997666655542 367888888753322 2222222233 455555555555
Q ss_pred E-eCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 383 G-SADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 383 ~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
+ ...+.|..+++........+ .-.+.-....+|++..+ . ++++-...+.|...+...+
T Consensus 575 aD~~~~~I~~~d~dG~~~~~v~-~~~~~l~~P~glav~~~-~-------------lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 575 VDSKLHSISSIDVNGGNRKTIL-EDEKRLAHPFSLAVFED-K-------------VFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp EETTTTEEEEEETTSCSCEEEE-ECTTTTSSEEEEEEETT-E-------------EEEEETTTTEEEEEETTTC
T ss_pred EeCCCCcEEEEecCCCceEEEe-cCCCccCCCCEEEEeCC-E-------------EEEEECCCCEEEEEeCCCC
Confidence 5 45568999998764322222 21122223456666443 2 5555555677777765544
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.042 Score=50.76 Aligned_cols=48 Identities=10% Similarity=0.108 Sum_probs=30.6
Q ss_pred cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 376 AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 376 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
+|.++++.-..+.|...++..+........+......+..|++.|++.
T Consensus 288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ 335 (353)
T 2g8s_A 288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY 335 (353)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence 467777777778888888775321111112223235789999999987
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.012 Score=53.06 Aligned_cols=187 Identities=8% Similarity=0.118 Sum_probs=93.6
Q ss_pred CCCEEEEEeCC-----CCEEEEEcCCCe-----eeEEeecCCCceeEEEEcCCCEEEEEeCC-----CcEEEEeCcccCC
Q 012007 246 EQGLLYSGSWD-----KTLKVWRISDCK-----CLESINAHDDAINSVVAGFDSLVFTGSAD-----GTVKVWRRELQGK 310 (473)
Q Consensus 246 ~~~~l~s~s~d-----g~v~vwd~~~~~-----~~~~~~~~~~~v~~l~~~~~~~l~s~~~d-----g~i~vwd~~~~~~ 310 (473)
++.+++.|+.+ ..+.+||+.+.+ .+..+........++.. .+.+++.|+.+ ..+.+||+...
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~-- 138 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNID-- 138 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTT--
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCC--
Confidence 45666777654 468999987754 23222222222222222 33355566543 35778887532
Q ss_pred CcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC-----CcEEEEecCCccccc-ceeecCcceEEEEEecCCEEEEEe
Q 012007 311 GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD-----GLVNFWECEKHLSHG-GVLRGHKMAVLCLAAAGNLVFSGS 384 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~l~s~~ 384 (473)
.......+.........+.+ ++++++.|+.+ ..+.+||+.+..-.. ..+........+...++.+++.|+
T Consensus 139 --~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG 214 (301)
T 2vpj_A 139 --QWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGG 214 (301)
T ss_dssp --EEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECC
T ss_pred --eEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeC
Confidence 22222222211222222222 56777777654 458889986532110 111111112233445778888887
Q ss_pred CC-----CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCC-----CcEEEEEcCC
Q 012007 385 AD-----RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLD-----KSVKVWRVSE 454 (473)
Q Consensus 385 ~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~D-----g~v~iW~i~~ 454 (473)
.+ ..+.+||+.+ ..+..+..+.........+.+ ++. +++.|+.+ ..|.+||+.+
T Consensus 215 ~~~~~~~~~v~~yd~~~-~~W~~~~~~p~~r~~~~~~~~--~~~-------------i~v~GG~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 215 FDGTAHLSSVEAYNIRT-DSWTTVTSMTTPRCYVGATVL--RGR-------------LYAIAGYDGNSLLSSIECYDPII 278 (301)
T ss_dssp BCSSSBCCCEEEEETTT-TEEEEECCCSSCCBSCEEEEE--TTE-------------EEEECCBCSSSBEEEEEEEETTT
T ss_pred CCCCcccceEEEEeCCC-CcEEECCCCCCcccceeEEEE--CCE-------------EEEEcCcCCCcccccEEEEcCCC
Confidence 64 4689999987 334444333221111122222 343 67777765 3567777765
Q ss_pred C
Q 012007 455 H 455 (473)
Q Consensus 455 ~ 455 (473)
.
T Consensus 279 ~ 279 (301)
T 2vpj_A 279 D 279 (301)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.016 Score=52.22 Aligned_cols=160 Identities=6% Similarity=0.026 Sum_probs=99.9
Q ss_pred CCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEE-eec----C--CCceeEEEE---cCCCEEEEEeC--------
Q 012007 236 DAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLES-INA----H--DDAINSVVA---GFDSLVFTGSA-------- 296 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~-~~~----~--~~~v~~l~~---~~~~~l~s~~~-------- 296 (473)
-.-.+++|++....|+.++ ..++|..||...+..... +.. . ...+..|.+ .+++.|+++..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 3446789998777777777 789999999975543333 221 1 113578899 57775544333
Q ss_pred ------CCcEEEEeCc---ccCCCcceeeeeeecc-------CCccEEEEEEccCCCEEEEeCCC-CcEEEEecCCcccc
Q 012007 297 ------DGTVKVWRRE---LQGKGTKHCLAQVLLK-------HENAVTALAVNQESAVVYCGSSD-GLVNFWECEKHLSH 359 (473)
Q Consensus 297 ------dg~i~vwd~~---~~~~~~~~~~~~~~~~-------~~~~v~~l~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~ 359 (473)
+..|..||+. ++.......+.....+ -......++..++|+..++++.. +.|...+..... .
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~-~ 171 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT-V 171 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-E
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-E
Confidence 6779999987 3322111111000111 12358899999999998888877 777777765431 1
Q ss_pred cceeec-------CcceEEEEEecCCEEEEEeCCCcEEEEecCC
Q 012007 360 GGVLRG-------HKMAVLCLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 360 ~~~~~~-------~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
...... ....-+.+.++|+.|++...+|.|..+|+..
T Consensus 172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 111110 1122356778899888887799999999885
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00082 Score=68.50 Aligned_cols=240 Identities=12% Similarity=0.057 Sum_probs=124.7
Q ss_pred CcEEEeeCCc-cccccccCcccEEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcce
Q 012007 143 KNIRVWKNLK-EFSGFKSNSGLVKAIIISGDSNKIFTGH-QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNY 220 (473)
Q Consensus 143 g~i~vwd~~~-~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (473)
+.|++.++.. ....+......+..|+|.+.+..|+.+. ..+.|+.+++.......... .
T Consensus 386 ~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~-~------------------ 446 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD-T------------------ 446 (699)
T ss_dssp TC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCC-C------------------
T ss_pred cceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceE-E------------------
Confidence 4666666542 2222222334567899998776776654 45788888887521000000 0
Q ss_pred EEEeecceeeEeeccCCeeEEEEcCCCCEEE-EEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC-CEEEEEeC--
Q 012007 221 VEVRRNRSVLKIRHYDAVSCLSLNAEQGLLY-SGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSA-- 296 (473)
Q Consensus 221 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~-~~l~s~~~-- 296 (473)
...........|++.+.+..|+ +-...+.|.++++........+.........|++.|. +.|+....
T Consensus 447 ---------~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~ 517 (699)
T 1n7d_A 447 ---------VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGT 517 (699)
T ss_dssp ---------BCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSS
T ss_pred ---------EEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCC
Confidence 0000112244577775444444 4445678999998654433333333345677888875 45544432
Q ss_pred CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC-CEEEEeCCCCcEEEEecCCcccccceee--cCcceEEEE
Q 012007 297 DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES-AVVYCGSSDGLVNFWECEKHLSHGGVLR--GHKMAVLCL 373 (473)
Q Consensus 297 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~ 373 (473)
.+.|.++++.... .. ......-.....|+|+|++ .++++-...+.|..+++...... .+.. ........+
T Consensus 518 ~~~I~~~~~dG~~---~~---~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~-~~~~~~~~~~~P~gl 590 (699)
T 1n7d_A 518 PAKIKKGGLNGVD---IY---SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFSL 590 (699)
T ss_dssp SCCEEBCCSSSCC---CC---EESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE-EECCCSSSCSSCCCC
T ss_pred CCeEEEEeCCCCC---ee---EEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE-EEEecCCcCCCceEe
Confidence 2677777664211 11 1111122345789999875 45555566778999998642221 1111 111112333
Q ss_pred EecCC-EEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEec
Q 012007 374 AAAGN-LVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEE 420 (473)
Q Consensus 374 ~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~ 420 (473)
+.++. ++++....+.|..++..+ ...+..+.......+.|++..
T Consensus 591 avd~~~lywtd~~~~~V~~~d~~~---G~~~~~i~~~~~~P~~i~v~~ 635 (699)
T 1n7d_A 591 AVFEDKVFWTDIINEAIFSANRLT---GSDVNLLAENLLSPEDMVLFH 635 (699)
T ss_dssp EEETTEEEEECSTTTCEEEEETTT---EEEEECCCTTCSSCCCCCBCS
T ss_pred EEECCEEEEEeCCCCeEEEEEccC---CCceEEeecCCCCCcEEEEeC
Confidence 44444 444555668899999876 344555543333345555443
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.11 Score=53.59 Aligned_cols=254 Identities=11% Similarity=0.175 Sum_probs=140.3
Q ss_pred cccEEEEEec-CCEEEEeeCCCcEEEeeCCcc--cccc-ccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeE
Q 012007 123 EGHIYSLAAS-GDLLYTGSDSKNIRVWKNLKE--FSGF-KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVH 198 (473)
Q Consensus 123 ~~~V~~~~~~-g~~l~tg~~dg~i~vwd~~~~--~~~~-~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 198 (473)
...|.++..| ..+|..|..+| +..||-.+. .... ......|.++....+| .|..|+.+| +..||..+.....
T Consensus 21 ~n~V~~I~qD~~G~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~- 96 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ- 96 (758)
T ss_dssp CCCEEEEEECTTSCEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC-
T ss_pred cceEEEEEECCCCCEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC-
Confidence 4568899887 34677777777 556664321 1111 1124568998888776 666677665 7789987653211
Q ss_pred EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee----
Q 012007 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN---- 274 (473)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~---- 274 (473)
. .. .....|.++.. .+ ..|..++.+ -|..+|..+++......
T Consensus 97 -~-~~-----------------------------~~~~~i~~i~~-~~-g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~ 142 (758)
T 3ott_A 97 -P-ET-----------------------------DFPTDVRTMAL-QG-DTLWLGALN-GLYTYQLQSRKLTSFDTRRNG 142 (758)
T ss_dssp -C-SC-----------------------------CCCSCEEEEEE-ET-TEEEEEETT-EEEEEETTTCCEEEECHHHHC
T ss_pred -c-cc-----------------------------CCCceEEEEEe-cC-CcEEEEcCC-cceeEeCCCCeEEEeccCCCC
Confidence 0 00 01224666654 34 457777766 58889987655432201
Q ss_pred cCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeec---cCCccEEEEEEccCCCEEEEeCCCCcEEEE
Q 012007 275 AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLL---KHENAVTALAVNQESAVVYCGSSDGLVNFW 351 (473)
Q Consensus 275 ~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~~~~~dg~i~iw 351 (473)
.....|.++....++.|..|+.+ -|..++..... ........ .....|.++....++..|..|+. +-+..+
T Consensus 143 l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~----~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~ 216 (758)
T 3ott_A 143 LPNNTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGK----FEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQY 216 (758)
T ss_dssp CSCSCEEEEEECTTCCEEEEETT-EEEEEETTTTE----EEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEE
T ss_pred cCCCeEEEEEEcCCCCEEEEeCC-CHhhCccCCCc----eEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEE
Confidence 12356888888777866667765 46677764211 00000000 01234888888877776666664 457888
Q ss_pred ecCCcccccceeecCcceEEEEEec-CCEEEEEeCCCcEEEEecCCCCceeEEEEec-----CCCCceeEEEEecCCC
Q 012007 352 ECEKHLSHGGVLRGHKMAVLCLAAA-GNLVFSGSADRNICLWRREESGAHSCLAVLT-----GHTGPVKCLAVEEDRD 423 (473)
Q Consensus 352 d~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~h~~~V~~l~~~~~~~ 423 (473)
|..+.... .........|.++..+ ...|..|+. +-+.+++..+.. ...+.... -....|.++....++.
T Consensus 217 ~~~~~~~~-~~~~l~~~~i~~i~~d~~g~lWigT~-~Gl~~~~~~~~~-~~~~~~~~~~~~~l~~~~i~~i~~D~~g~ 291 (758)
T 3ott_A 217 FPSTGQIK-QTEAFHNNSIKSLALDGNGDLLAGTD-NGLYVYHNDTTP-LQHIIHDSRNIQSLTNNIIWNIFADQEHN 291 (758)
T ss_dssp ETTTTEEE-EEEEEEEEEEEEEEECTTCCEEEEET-TEEEEECCTTSC-CEEECCCTTCTTSCSCSCEEEEEECTTCC
T ss_pred cCCCCeEE-eccCCCCCeEEEEEEcCCCCEEEEeC-CceeEEecCCCc-EEEEEcCCCCcCcCCcCeEEEEEEcCCCC
Confidence 87653221 1111123346677665 345556664 458888876532 11111100 1123588888777665
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.036 Score=49.81 Aligned_cols=150 Identities=10% Similarity=0.094 Sum_probs=75.8
Q ss_pred CCCEEEEEeCC-----CCEEEEEcCCCeeeE--EeecCCCceeEEEEcCCCEEEEEeCC-----CcEEEEeCcccCCCcc
Q 012007 246 EQGLLYSGSWD-----KTLKVWRISDCKCLE--SINAHDDAINSVVAGFDSLVFTGSAD-----GTVKVWRRELQGKGTK 313 (473)
Q Consensus 246 ~~~~l~s~s~d-----g~v~vwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~ 313 (473)
++.+++.|+.+ ..+.+||+.+.+-.. .+......- +++...+.+++.|+.+ ..+.+||+... .
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~----~ 186 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGA-GLVVASGVIYCLGGYDGLNILNSVEKYDPHTG----H 186 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSC-EEEEETTEEEEECCBCSSCBCCCEEEEETTTT----E
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccc-eEEEECCEEEEECCCCCCcccceEEEEeCCCC----c
Confidence 55666666643 358899987765332 222211112 2222233355666654 45888887632 2
Q ss_pred eeeeeeeccCCccEEEEEEccCCCEEEEeCCC-----CcEEEEecCCcccc-cceeecCcceEEEEEecCCEEEEEeCC-
Q 012007 314 HCLAQVLLKHENAVTALAVNQESAVVYCGSSD-----GLVNFWECEKHLSH-GGVLRGHKMAVLCLAAAGNLVFSGSAD- 386 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~~~d- 386 (473)
......+.........+.+ ++.+++.|+.+ ..+.+||+.+..-. ...+........+...++++++.|+.+
T Consensus 187 W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 264 (301)
T 2vpj_A 187 WTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDG 264 (301)
T ss_dssp EEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred EEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCC
Confidence 2222222211222222333 56777777764 46889998753211 111111111223344578888888765
Q ss_pred ----CcEEEEecCCCCceeEE
Q 012007 387 ----RNICLWRREESGAHSCL 403 (473)
Q Consensus 387 ----g~i~iwd~~~~~~~~~~ 403 (473)
..|.+||..+ ..+..+
T Consensus 265 ~~~~~~v~~yd~~~-~~W~~~ 284 (301)
T 2vpj_A 265 NSLLSSIECYDPII-DSWEVV 284 (301)
T ss_dssp SSBEEEEEEEETTT-TEEEEE
T ss_pred CcccccEEEEcCCC-CeEEEc
Confidence 3578888876 334444
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.031 Score=50.25 Aligned_cols=187 Identities=11% Similarity=0.097 Sum_probs=92.7
Q ss_pred CCCEEEEEeCC-----CCEEEEEcCCCeeeE--EeecCCCceeEEEEcCCCEEEEEeCCC-----cEEEEeCcccCCCcc
Q 012007 246 EQGLLYSGSWD-----KTLKVWRISDCKCLE--SINAHDDAINSVVAGFDSLVFTGSADG-----TVKVWRRELQGKGTK 313 (473)
Q Consensus 246 ~~~~l~s~s~d-----g~v~vwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~ 313 (473)
++.+++.|+.+ ..+.+||..+.+-.. .+....... +++...+.+++.|+.++ .+.+||+... .
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~----~ 135 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTL-GAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSN----E 135 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEETTEEEEEEEECSSCEEEEEEEEETTTT----E
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccce-EEEEECCEEEEEcCCCCCccCceEEEEeCCCC----e
Confidence 55666666644 358899988765322 222111122 22222334556666553 4667777532 2
Q ss_pred eeeeeeeccCCccEEEEEEccCCCEEEEeCCC-------CcEEEEecCCcccc-cceeecCcceEEEEEecCCEEEEEeC
Q 012007 314 HCLAQVLLKHENAVTALAVNQESAVVYCGSSD-------GLVNFWECEKHLSH-GGVLRGHKMAVLCLAAAGNLVFSGSA 385 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~~~ 385 (473)
......+.........+.+ ++++++.|+.+ ..+.+||+.+..-. ...+........+...++.+++.|+.
T Consensus 136 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 213 (302)
T 2xn4_A 136 WFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGH 213 (302)
T ss_dssp EEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCB
T ss_pred EeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCC
Confidence 2222222211222222222 56677776643 35888998753211 01111111122334457888888876
Q ss_pred C-----CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCC-----cEEEEEcCCC
Q 012007 386 D-----RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDK-----SVKVWRVSEH 455 (473)
Q Consensus 386 d-----g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg-----~v~iW~i~~~ 455 (473)
+ ..+.+||..+ ..+..+..+...... .+++.. ++. +++.|+.++ .|.+||+.+.
T Consensus 214 ~~~~~~~~~~~yd~~~-~~W~~~~~~~~~r~~-~~~~~~-~~~-------------i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 214 DGPLVRKSVEVYDPTT-NAWRQVADMNMCRRN-AGVCAV-NGL-------------LYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp SSSSBCCCEEEEETTT-TEEEEECCCSSCCBS-CEEEEE-TTE-------------EEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCCcccceEEEEeCCC-CCEeeCCCCCCcccc-CeEEEE-CCE-------------EEEECCcCCCcccccEEEEcCCCC
Confidence 5 3688999887 334444333211111 122222 333 677777654 4888888754
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.49 E-value=0.17 Score=54.48 Aligned_cols=177 Identities=12% Similarity=0.114 Sum_probs=109.0
Q ss_pred CCEEEEEcCCCeeeEEeec-CCCceeEEE---EcCC--CEEEEEe----------CCCcEEEEeCcccCCCcceeeeeee
Q 012007 257 KTLKVWRISDCKCLESINA-HDDAINSVV---AGFD--SLVFTGS----------ADGTVKVWRRELQGKGTKHCLAQVL 320 (473)
Q Consensus 257 g~v~vwd~~~~~~~~~~~~-~~~~v~~l~---~~~~--~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~ 320 (473)
+.|++.|..+.+.+..+.- ....+.+++ +..+ .++++|+ ..|.|.+|++.. .+..+. ..
T Consensus 807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~----~kL~lv-~~ 881 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD----GKLQTV-AE 881 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEET----TEEEEE-EE
T ss_pred EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEEC----CEEEEE-EE
Confidence 3578888888877766543 233455554 2222 3777776 357899999861 122222 22
Q ss_pred ccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCc-ceEEEEEecCCEEEEEeCCCcEEEEecCCCCc
Q 012007 321 LKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHK-MAVLCLAAAGNLVFSGSADRNICLWRREESGA 399 (473)
Q Consensus 321 ~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 399 (473)
...+++|++++-- +|++|++. ..+|++|++.....+........ ..+..+...++++++|..-..|.++..+....
T Consensus 882 ~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~ 958 (1158)
T 3ei3_A 882 KEVKGAVYSMVEF-NGKLLASI--NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEG 958 (1158)
T ss_dssp EEESSCEEEEEEE-TTEEEEEE--TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTT
T ss_pred EEcCCcCEEEeee-CCEEEEEc--CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCC
Confidence 3346788888755 34444433 46899999976433221111111 12446667799999999888888876554221
Q ss_pred eeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 400 HSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 400 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
.-....-..+...++++.+-.++ .++.+..+|.|.+.+....
T Consensus 959 ~L~~~a~D~~~~~vta~~~ld~~--------------t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 959 NFEEIARDFNPNWMSAVEILDDD--------------NFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp EEEEEEECCSCBCEEEEEEEETT--------------EEEEEETTSEEEEEEECTT
T ss_pred eEEEEEeecccccEEEEEEEccC--------------cEEEEcCCCcEEEEecCCC
Confidence 11111223456688999998765 5788999999999998764
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.066 Score=48.19 Aligned_cols=154 Identities=9% Similarity=0.095 Sum_probs=78.8
Q ss_pred CCCEEEEEeCC------CCEEEEEcCCCeeeEE--eecCCCceeEEEEcCCCEEEEEeC---------CCcEEEEeCccc
Q 012007 246 EQGLLYSGSWD------KTLKVWRISDCKCLES--INAHDDAINSVVAGFDSLVFTGSA---------DGTVKVWRRELQ 308 (473)
Q Consensus 246 ~~~~l~s~s~d------g~v~vwd~~~~~~~~~--~~~~~~~v~~l~~~~~~~l~s~~~---------dg~i~vwd~~~~ 308 (473)
++.+++.|+.+ ..+.+||+.+.+-... +......- +++...+.+++.|+. -..+.+||+...
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~ 179 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSH-GMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE 179 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEETTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCccee-EEEEECCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence 56677777655 4589999987653322 22111111 222223335555543 345788888642
Q ss_pred CCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC-----CcEEEEecCCccc-ccceeecCcceEEEEEecCCEEEE
Q 012007 309 GKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD-----GLVNFWECEKHLS-HGGVLRGHKMAVLCLAAAGNLVFS 382 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~l~s 382 (473)
.......+......-..+.+ ++++++.|+.+ ..+.+||+.+..- ....+........+...++.+++.
T Consensus 180 ----~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~ 253 (306)
T 3ii7_A 180 ----TWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVL 253 (306)
T ss_dssp ----EEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEEE
T ss_pred ----eEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEECCEEEEE
Confidence 22222222211122222222 56677777654 3588899875321 111111112222334457888888
Q ss_pred EeCC-----CcEEEEecCCCCceeEEEEec
Q 012007 383 GSAD-----RNICLWRREESGAHSCLAVLT 407 (473)
Q Consensus 383 ~~~d-----g~i~iwd~~~~~~~~~~~~~~ 407 (473)
|+.+ ..+.+||..+ ..+..+..+.
T Consensus 254 GG~~~~~~~~~~~~yd~~~-~~W~~~~~~~ 282 (306)
T 3ii7_A 254 AGFQGVGRLGHILEYNTET-DKWVANSKVR 282 (306)
T ss_dssp ECBCSSSBCCEEEEEETTT-TEEEEEEEEE
T ss_pred eCcCCCeeeeeEEEEcCCC-CeEEeCCCcc
Confidence 8854 4688899887 3455555444
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.035 Score=50.01 Aligned_cols=187 Identities=9% Similarity=0.106 Sum_probs=93.4
Q ss_pred CCCEEEEEeCC----CCEEEEEcCCCeeeE--EeecCCCceeEEEEcCCCEEEEEeCC------CcEEEEeCcccCCCcc
Q 012007 246 EQGLLYSGSWD----KTLKVWRISDCKCLE--SINAHDDAINSVVAGFDSLVFTGSAD------GTVKVWRRELQGKGTK 313 (473)
Q Consensus 246 ~~~~l~s~s~d----g~v~vwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~ 313 (473)
++.+++.|+.+ ..+.+||+.+.+-.. .+........ ++...+.+++.|+.+ ..+.+||+... .
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~----~ 129 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLA-ACAAEGKIYTSGGSEVGNSALYLFECYDTRTE----S 129 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCE-EEEETTEEEEECCBBTTBSCCCCEEEEETTTT----E
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcccccee-EEEECCEEEEECCCCCCCcEeeeEEEEeCCCC----c
Confidence 55666777654 568889988765332 2222111222 222233356666654 45888887632 2
Q ss_pred eeeeeeeccCCccEEEEEEccCCCEEEEeCC---------CCcEEEEecCCcccc-cceeecCcceEEEEEecCCEEEEE
Q 012007 314 HCLAQVLLKHENAVTALAVNQESAVVYCGSS---------DGLVNFWECEKHLSH-GGVLRGHKMAVLCLAAAGNLVFSG 383 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~ 383 (473)
......+.........+.+ ++++++.|+. -..+.+||+.+..-. ...+........+...++++++.|
T Consensus 130 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G 207 (306)
T 3ii7_A 130 WHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVG 207 (306)
T ss_dssp EEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred eEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEe
Confidence 2222112111112222222 5666666654 345888998754211 011111111223334477777877
Q ss_pred eCC-----CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCC-----CcEEEEEcC
Q 012007 384 SAD-----RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLD-----KSVKVWRVS 453 (473)
Q Consensus 384 ~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~D-----g~v~iW~i~ 453 (473)
+.+ ..+.+||+.+ ..+..+..+........++.+ ++. +++.|+.+ ..|.+||+.
T Consensus 208 G~~~~~~~~~~~~yd~~~-~~W~~~~~~p~~r~~~~~~~~--~~~-------------i~v~GG~~~~~~~~~~~~yd~~ 271 (306)
T 3ii7_A 208 GQNGLGGLDNVEYYDIKL-NEWKMVSPMPWKGVTVKCAAV--GSI-------------VYVLAGFQGVGRLGHILEYNTE 271 (306)
T ss_dssp CEETTEEBCCEEEEETTT-TEEEECCCCSCCBSCCEEEEE--TTE-------------EEEEECBCSSSBCCEEEEEETT
T ss_pred CCCCCCCCceEEEeeCCC-CcEEECCCCCCCccceeEEEE--CCE-------------EEEEeCcCCCeeeeeEEEEcCC
Confidence 754 3588999887 334444333222222222322 333 77777754 457788876
Q ss_pred CC
Q 012007 454 EH 455 (473)
Q Consensus 454 ~~ 455 (473)
..
T Consensus 272 ~~ 273 (306)
T 3ii7_A 272 TD 273 (306)
T ss_dssp TT
T ss_pred CC
Confidence 54
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.07 Score=48.13 Aligned_cols=152 Identities=9% Similarity=0.097 Sum_probs=76.2
Q ss_pred CCCEEEEEeCC-----CCEEEEEcCCCeeeE--EeecCCCceeEEEEcCCCEEEEEeCC-----CcEEEEeCcccCCCcc
Q 012007 246 EQGLLYSGSWD-----KTLKVWRISDCKCLE--SINAHDDAINSVVAGFDSLVFTGSAD-----GTVKVWRRELQGKGTK 313 (473)
Q Consensus 246 ~~~~l~s~s~d-----g~v~vwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~ 313 (473)
++.+++.|+.+ ..+.+||+.+.+-.. .+......-.+ +...+.+++.|+.+ ..+.+||+... .
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~----~ 195 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGV-AVLNRLLYAVGGFDGTNRLNSAECYYPERN----E 195 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEE-EEETTEEEEECCBCSSCBCCCEEEEETTTT----E
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEE-EEECCEEEEEeCCCCCCcCceEEEEeCCCC----e
Confidence 55666666533 468899987765332 22211112222 22233455666554 45888887632 2
Q ss_pred eeeeeeeccCCccEEEEEEccCCCEEEEeCCC-----CcEEEEecCCcccc-cceeecCcceEEEEEecCCEEEEEeCC-
Q 012007 314 HCLAQVLLKHENAVTALAVNQESAVVYCGSSD-----GLVNFWECEKHLSH-GGVLRGHKMAVLCLAAAGNLVFSGSAD- 386 (473)
Q Consensus 314 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~~~d- 386 (473)
......+.........+.+ ++.+++.|+.+ ..+.+||+.+..-. ...+........+...++++++.|+.+
T Consensus 196 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 196 WRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDG 273 (308)
T ss_dssp EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred EeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcCC
Confidence 2222222222222222333 56777777664 46889998753211 111111111223334577888888754
Q ss_pred ----CcEEEEecCCCCceeEEEE
Q 012007 387 ----RNICLWRREESGAHSCLAV 405 (473)
Q Consensus 387 ----g~i~iwd~~~~~~~~~~~~ 405 (473)
..+.+||+.+ ..+..+..
T Consensus 274 ~~~~~~v~~yd~~~-~~W~~~~~ 295 (308)
T 1zgk_A 274 HTFLDSVECYDPDT-DTWSEVTR 295 (308)
T ss_dssp SCBCCEEEEEETTT-TEEEEEEE
T ss_pred CcccceEEEEcCCC-CEEeecCC
Confidence 3577888876 33444433
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.052 Score=48.76 Aligned_cols=144 Identities=13% Similarity=0.143 Sum_probs=72.8
Q ss_pred CCCEEEEEeCCC-----CEEEEEcCCCeeeEE--eecCCCceeEEEEcCCCEEEEEeCC-------CcEEEEeCcccCCC
Q 012007 246 EQGLLYSGSWDK-----TLKVWRISDCKCLES--INAHDDAINSVVAGFDSLVFTGSAD-------GTVKVWRRELQGKG 311 (473)
Q Consensus 246 ~~~~l~s~s~dg-----~v~vwd~~~~~~~~~--~~~~~~~v~~l~~~~~~~l~s~~~d-------g~i~vwd~~~~~~~ 311 (473)
++.+++.|+.++ .+.+||+.+.+-... +...... .+++...+.+++.|+.+ ..+.+||+...
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--- 183 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS-VGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTN--- 183 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS-CEEEEETTEEEEECCEETTTTEECCCEEEEETTTT---
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC-ceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCC---
Confidence 566777776553 477888877653322 2211111 12222333355555542 35788887632
Q ss_pred cceeeeeeeccCCccEEEEEEccCCCEEEEeCCC-----CcEEEEecCCcccc-cceeecCcceEEEEEecCCEEEEEeC
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD-----GLVNFWECEKHLSH-GGVLRGHKMAVLCLAAAGNLVFSGSA 385 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~~~ 385 (473)
.......+.........+.+ ++.+++.|+.+ ..+.+||+.+..-. ...+........+...++.+++.|+.
T Consensus 184 -~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~ 260 (302)
T 2xn4_A 184 -EWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGD 260 (302)
T ss_dssp -EEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCB
T ss_pred -cEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCc
Confidence 22222222211222222222 56777777664 36889998753211 01111111112234457888888876
Q ss_pred CC-----cEEEEecCC
Q 012007 386 DR-----NICLWRREE 396 (473)
Q Consensus 386 dg-----~i~iwd~~~ 396 (473)
++ .+.+||..+
T Consensus 261 ~~~~~~~~v~~yd~~~ 276 (302)
T 2xn4_A 261 DGSCNLASVEYYNPTT 276 (302)
T ss_dssp CSSSBCCCEEEEETTT
T ss_pred CCCcccccEEEEcCCC
Confidence 54 488899887
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0019 Score=65.85 Aligned_cols=197 Identities=13% Similarity=0.072 Sum_probs=107.9
Q ss_pred CCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCC----CeeeEEeecCCCceeEEEEcC-CC-EEEEEeCCCcEEEEeCccc
Q 012007 236 DAVSCLSLNAEQGLLYSGS-WDKTLKVWRISD----CKCLESINAHDDAINSVVAGF-DS-LVFTGSADGTVKVWRRELQ 308 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~----~~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~dg~i~vwd~~~~ 308 (473)
..+..|+|++.+..|+.+. ..+.|+.+++.. ......+.........|++.+ .+ ++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 4566789998777776664 457899999875 222222222222345677663 33 4445456788999987521
Q ss_pred CCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC--CCcEEEEecCCcccccceeec--CcceEEEEEec-CCEEEEE
Q 012007 309 GKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS--DGLVNFWECEKHLSHGGVLRG--HKMAVLCLAAA-GNLVFSG 383 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~-~~~l~s~ 383 (473)
. ..............|+++|.+.+|+.... .+.|..+++...... .+... ....-++++++ +.++++-
T Consensus 486 ~------~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~-~l~~~~l~~PnGlavd~~~~~LY~aD 558 (699)
T 1n7d_A 486 K------RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVTENIQWPNGITLDLLSGRLYWVD 558 (699)
T ss_dssp C------EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC-EESCSSCSSCCCEEECTTTCCEEEEE
T ss_pred c------eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee-EEEeCCCCCccEEEEeccCCEEEEEe
Confidence 1 11111122234577899997655555443 268888887643221 11111 11223556665 4455555
Q ss_pred eCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 384 SADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 384 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
...+.|.++++.... ...+............|++..+ . ++++....+.|..++..+
T Consensus 559 ~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~-------------lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 559 SKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-K-------------VFWTDIINEAIFSANRLT 614 (699)
T ss_dssp TTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-E-------------EEEECSTTTCEEEEETTT
T ss_pred cCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-E-------------EEEEeCCCCeEEEEEccC
Confidence 567789999987522 2222211111223345666544 2 666766778898888654
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.056 Score=50.32 Aligned_cols=113 Identities=15% Similarity=0.123 Sum_probs=78.7
Q ss_pred CeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe------------eeEEeec------CCCceeEEEEcCCC----EEEEE
Q 012007 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK------------CLESINA------HDDAINSVVAGFDS----LVFTG 294 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~------------~~~~~~~------~~~~v~~l~~~~~~----~l~s~ 294 (473)
.|..+..+|+|++|+..+ +..|.|..+..+. ..+.+.. ....|..+.|+|-+ .|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 567799999999999987 4689999887322 1122322 24679999999975 89999
Q ss_pred eCCCcEEEEeCcccCCCcceeeee-----eeccCCccEEEEEEccCCCEEEEe--CCCCcEEEE
Q 012007 295 SADGTVKVWRRELQGKGTKHCLAQ-----VLLKHENAVTALAVNQESAVVYCG--SSDGLVNFW 351 (473)
Q Consensus 295 ~~dg~i~vwd~~~~~~~~~~~~~~-----~~~~~~~~v~~l~~~~~~~~l~~~--~~dg~i~iw 351 (473)
..|+.|++||+........ .+.. ........|.+++|..++-.|++. +.+|.|+-.
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 9999999999985221111 1111 112233678999999988777774 488888654
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.24 Score=49.54 Aligned_cols=222 Identities=9% Similarity=0.024 Sum_probs=129.2
Q ss_pred EEEEeeCCCcEEEeeCCccc-c-cc-ccCcccEEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCeeeEEeecccccccee
Q 012007 135 LLYTGSDSKNIRVWKNLKEF-S-GF-KSNSGLVKAIIISGDSNKIFTGH-QDGKIRIWKVSRKNASVHKRVGSLPTFKDY 210 (473)
Q Consensus 135 ~l~tg~~dg~i~vwd~~~~~-~-~~-~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 210 (473)
+|+.+. ...|+..++.... . .+ ...-..+..|+|++.+..|+.+. .++.|..+++...........
T Consensus 8 ~Ll~s~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~--------- 77 (628)
T 4a0p_A 8 FLLFSR-RADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF--------- 77 (628)
T ss_dssp EEEEEE-TTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---------
T ss_pred EEEEEe-CCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC---------
Confidence 344333 3567777664221 1 11 11234678999998766666554 568898888876432211110
Q ss_pred EeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE-eCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcC-C
Q 012007 211 VKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTLKVWRISDCKCLESINAHDDAINSVVAGF-D 288 (473)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~-~ 288 (473)
.......|++.+.+..|+.+ ...+.|.+.++........+.........|++.| .
T Consensus 78 -----------------------g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~ 134 (628)
T 4a0p_A 78 -----------------------GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAE 134 (628)
T ss_dssp -----------------------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTT
T ss_pred -----------------------CCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCC
Confidence 11345678888766655555 4567899999864432222223445678999987 4
Q ss_pred CEEEEEeC--CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe-CCCCcEEEEecCCcccccceeec
Q 012007 289 SLVFTGSA--DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG-SSDGLVNFWECEKHLSHGGVLRG 365 (473)
Q Consensus 289 ~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~ 365 (473)
+.|+.... .+.|...++.... . ..+...-.....|++++++..|+.+ ...+.|..+|+..... ..+..
T Consensus 135 G~lY~tD~g~~~~I~r~~~dG~~---~----~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v~~~ 205 (628)
T 4a0p_A 135 GFMYWTEWGGKPKIDRAAMDGSE---R----TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EVIAD 205 (628)
T ss_dssp TEEEEEECSSSCEEEEEETTSCS---C----EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEE
T ss_pred CeEEEeCCCCCCEEEEEeCCCCc---e----EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EEeec
Confidence 56665553 4566666664211 1 1112234567899999976666555 5567899999875333 23333
Q ss_pred CcceEEEEEecCCEEEEEe-CCCcEEEEecCCCC
Q 012007 366 HKMAVLCLAAAGNLVFSGS-ADRNICLWRREESG 398 (473)
Q Consensus 366 ~~~~v~~~~~~~~~l~s~~-~dg~i~iwd~~~~~ 398 (473)
.......++.++..|+... ..+.|...|..++.
T Consensus 206 ~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 206 DLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp CCSCEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred cCCCceEEEEECCEEEEecCCCCEEEEEECCCCC
Confidence 3333445665555555544 57788888876644
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.18 Score=48.42 Aligned_cols=200 Identities=9% Similarity=0.009 Sum_probs=104.5
Q ss_pred EEEEe-c-CCEEEEeeCCCcEEEeeCCc-ccccccc----CcccEEEEEE-------eCCCCEEEEEeCCC-------eE
Q 012007 127 YSLAA-S-GDLLYTGSDSKNIRVWKNLK-EFSGFKS----NSGLVKAIII-------SGDSNKIFTGHQDG-------KI 185 (473)
Q Consensus 127 ~~~~~-~-g~~l~tg~~dg~i~vwd~~~-~~~~~~~----h~~~V~~l~~-------s~~~~~l~s~~~dg-------~i 185 (473)
+++.+ + ++++++-...+.|++.|... .+..+.. .......|+| ++++++|+.+...+ .|
T Consensus 144 la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V 223 (496)
T 3kya_A 144 LAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSV 223 (496)
T ss_dssp EEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEE
T ss_pred EEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceE
Confidence 34554 2 33444444456788888664 3433322 2235899999 99999777766554 24
Q ss_pred EEEeCCC-CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCC-CEEEEEeCCCCEEEEE
Q 012007 186 RIWKVSR-KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDKTLKVWR 263 (473)
Q Consensus 186 ~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~s~dg~v~vwd 263 (473)
.+.+... +...... . . ... .-......++++|++ .++++-..++.|..+|
T Consensus 224 ~~i~r~~~G~~~~~~------------------~-~------~~v---~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d 275 (496)
T 3kya_A 224 YIIKRNADGTFDDRS------------------D-I------QLI---AAYKQCNGATIHPINGELYFNSYEKGQVFRLD 275 (496)
T ss_dssp EEEECCTTSCCSTTS------------------C-E------EEE---EEESCCCCEEECTTTCCEEEEETTTTEEEEEC
T ss_pred EEEecCCCCceeecc------------------c-c------eee---ccCCCceEEEEcCCCCeEEEEECCCCEEEEEe
Confidence 4554332 1110000 0 0 000 011234567889954 4455555777899999
Q ss_pred cC-------CCee-----------eEE-ee-cCCCceeEEEEcCCC-E-EEEEeCCCcEEEEeCcccCCCc--ceeeeee
Q 012007 264 IS-------DCKC-----------LES-IN-AHDDAINSVVAGFDS-L-VFTGSADGTVKVWRRELQGKGT--KHCLAQV 319 (473)
Q Consensus 264 ~~-------~~~~-----------~~~-~~-~~~~~v~~l~~~~~~-~-l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~ 319 (473)
+. ++.. ... +. ........|+++|++ . +++-.....|+.++........ .....-.
T Consensus 276 ~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~ 355 (496)
T 3kya_A 276 LVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGG 355 (496)
T ss_dssp HHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEB
T ss_pred cccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCC
Confidence 87 5543 112 21 123345789999998 3 4444567788886654211000 0000000
Q ss_pred --ecc---------CCccEE-EEEEc-------cCCCEEEEeCCCCcEEEEecC
Q 012007 320 --LLK---------HENAVT-ALAVN-------QESAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 320 --~~~---------~~~~v~-~l~~~-------~~~~~l~~~~~dg~i~iwd~~ 354 (473)
..+ .-.... .++.. .++.++++-..+..|+.++..
T Consensus 356 ~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~ 409 (496)
T 3kya_A 356 YKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPE 409 (496)
T ss_dssp TTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTT
T ss_pred CCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCC
Confidence 000 112234 45554 456666666777889999843
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.17 Score=46.72 Aligned_cols=228 Identities=11% Similarity=0.077 Sum_probs=116.7
Q ss_pred ccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE
Q 012007 162 GLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL 241 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 241 (473)
.....|+|.|+|+ |+.+..+|.|++++. ++. .....+. . ..........|
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~-~~~~~~~---v------------------------~~~g~~g~~gi 78 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLISP-SGK-KLVASFD---V------------------------ANVGEAGLLGL 78 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEECS-SCE-EEEEECC---C------------------------CCSTTCSEEEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCc-eEeeccc---e------------------------eecCCCceeeE
Confidence 3467899999997 555567799998873 332 1111100 0 00123457889
Q ss_pred EEcCC---CCEEEEEeC----C----CCEEEEEcCCC-------eee-EEeec-CCCceeEEEEcCCCEEEEEeCC----
Q 012007 242 SLNAE---QGLLYSGSW----D----KTLKVWRISDC-------KCL-ESINA-HDDAINSVVAGFDSLVFTGSAD---- 297 (473)
Q Consensus 242 ~~~~~---~~~l~s~s~----d----g~v~vwd~~~~-------~~~-~~~~~-~~~~v~~l~~~~~~~l~s~~~d---- 297 (473)
+++|+ +..|+++.. + ..|..|+.... +.+ ..+.. .......|.|.|++.|+.+..+
T Consensus 79 a~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~ 158 (354)
T 3a9g_A 79 ALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADP 158 (354)
T ss_dssp EECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCG
T ss_pred EeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCC
Confidence 99997 566666543 2 56777877543 111 12321 1123467899999955544322
Q ss_pred ----------CcEEEEeCcccCCCcce----eeeeeeccCCccEEEEEEcc-CCCEEEEeCCCC---cEEEEecCCc---
Q 012007 298 ----------GTVKVWRRELQGKGTKH----CLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDG---LVNFWECEKH--- 356 (473)
Q Consensus 298 ----------g~i~vwd~~~~~~~~~~----~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg---~i~iwd~~~~--- 356 (473)
|.|.-++.. +..... .......++. ....++|+| ++.++++-.... .|.+......
T Consensus 159 ~~~~d~~~~~G~I~ri~~d--G~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGw 235 (354)
T 3a9g_A 159 RLAQDLSSLAGKILRVDEE--GRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGW 235 (354)
T ss_dssp GGGTCTTCCSSEEEEECTT--SCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCT
T ss_pred ccccCCCCCCeEEEEEcCC--CCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCC
Confidence 344444443 110000 0011122332 246799999 666555433222 2443321110
Q ss_pred ------------cccccee-ecCcceEEEEE---------ecCCEEEEEeCCCcEEEEecCCCCceeEEEE-ecCCCCce
Q 012007 357 ------------LSHGGVL-RGHKMAVLCLA---------AAGNLVFSGSADRNICLWRREESGAHSCLAV-LTGHTGPV 413 (473)
Q Consensus 357 ------------~~~~~~~-~~~~~~v~~~~---------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~h~~~V 413 (473)
......+ ..| .....+. ++|.++++.-..+.|...++...+....... +.+-...+
T Consensus 236 p~~~g~~~~~~~~~p~~~~~~~~-~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp 314 (354)
T 3a9g_A 236 PLATGKAGRGEFVDPVIDTGSET-WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRL 314 (354)
T ss_dssp TTCCSCCCCTTSCCCSEECTTCC-CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCE
T ss_pred CcccCCCCCCCCcCCEeecCCCC-cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCe
Confidence 0111111 112 2233343 3577777777777888888875321111222 33334578
Q ss_pred eEEEEecCCC
Q 012007 414 KCLAVEEDRD 423 (473)
Q Consensus 414 ~~l~~~~~~~ 423 (473)
..+++.||+.
T Consensus 315 ~~v~~~pDG~ 324 (354)
T 3a9g_A 315 RDVVIDDDGG 324 (354)
T ss_dssp EEEEECTTSC
T ss_pred eEEEECCCCc
Confidence 9999999987
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.27 Score=49.16 Aligned_cols=196 Identities=11% Similarity=0.055 Sum_probs=115.0
Q ss_pred CCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC-C-EEEEEeCCCcEEEEeCcccCCCc
Q 012007 236 DAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-S-LVFTGSADGTVKVWRRELQGKGT 312 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~-~-~l~s~~~dg~i~vwd~~~~~~~~ 312 (473)
..+..|+|++.+..|+.+. .++.|..+++........+.........+++... + ++++-...+.|.+.++....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~--- 113 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH--- 113 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT---
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc---
Confidence 4577899999766666554 5688999988654433333333345677777644 3 45555667889998876221
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeC--CCCcEEEEecCCcccccceeec-CcceEEEEEecCCEEEEE-eCCCc
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGS--SDGLVNFWECEKHLSHGGVLRG-HKMAVLCLAAAGNLVFSG-SADRN 388 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~s~-~~dg~ 388 (473)
...+ ....-.....|+++|....|+... ..+.|...++...... ..... ....-+++++++..|+.+ ...+.
T Consensus 114 ~~~l---~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~-~l~~~~~~P~GlalD~~~~~LY~aD~~~~~ 189 (628)
T 4a0p_A 114 RQVL---VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-TLVPNVGRANGLTIDYAKRRLYWTDLDTNL 189 (628)
T ss_dssp CEEE---ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEECSCSSEEEEEEETTTTEEEEEETTTTE
T ss_pred EEEE---EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE-EEECCCCCcceEEEccccCEEEEEECCCCE
Confidence 1111 113335578999999655565554 2567888877653222 11211 112234555555655555 45678
Q ss_pred EEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 389 ICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 389 i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
|..+++..... +.+.. ......+|++..+ . ++++-...+.|...+..++.
T Consensus 190 I~~~d~dG~~~-~v~~~---~l~~P~glav~~~-~-------------ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 190 IESSNMLGLNR-EVIAD---DLPHPFGLTQYQD-Y-------------IYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EEEEETTSCSC-EEEEE---CCSCEEEEEEETT-E-------------EEEEETTTTEEEEEETTTCC
T ss_pred EEEEcCCCCce-EEeec---cCCCceEEEEECC-E-------------EEEecCCCCEEEEEECCCCC
Confidence 99999876433 33322 2233467887653 2 55555567788888865554
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.29 Score=48.90 Aligned_cols=217 Identities=8% Similarity=0.028 Sum_probs=118.3
Q ss_pred CcEEEeeCCcc---ccccccCcccEEEEEEeCCCCEEEEEeC-CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCc
Q 012007 143 KNIRVWKNLKE---FSGFKSNSGLVKAIIISGDSNKIFTGHQ-DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPK 218 (473)
Q Consensus 143 g~i~vwd~~~~---~~~~~~h~~~V~~l~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (473)
..|++.++... .......-..+..|+|++.+..|+.+.. .+.|..++++......... .
T Consensus 18 ~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~-~---------------- 80 (619)
T 3s94_A 18 RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV-V---------------- 80 (619)
T ss_dssp SBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEE-C----------------
T ss_pred ccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEE-e----------------
Confidence 46677665532 2223333456789999987777766554 5788888886542111100 0
Q ss_pred ceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE-eCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC-CEEEEEeC
Q 012007 219 NYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSA 296 (473)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~-~~l~s~~~ 296 (473)
........|++++.+..|+.+ ...+.|.+.++........+.........|++.|. +.|+....
T Consensus 81 --------------~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~ 146 (619)
T 3s94_A 81 --------------SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW 146 (619)
T ss_dssp --------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEEC
T ss_pred --------------CCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEecc
Confidence 012457789999866655555 45688999998654332223234456778888875 56655543
Q ss_pred --CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe-CCCCcEEEEecCCcccccceeecCcceEEEE
Q 012007 297 --DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG-SSDGLVNFWECEKHLSHGGVLRGHKMAVLCL 373 (473)
Q Consensus 297 --dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 373 (473)
.+.|...++. +. ... ......-.....|++++++..|+.+ ...+.|..+|+....... ...+.......+
T Consensus 147 g~~~~I~r~~~d--G~-~~~---~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~-~~~~~~~~P~gi 219 (619)
T 3s94_A 147 GEVPKIERAGMD--GS-SRF---IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA-VVKGSLPHPFAL 219 (619)
T ss_dssp SSSCEEEEEETT--SC-SCE---EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC----------CCCE
T ss_pred CCCCEEEEEECC--CC-ceE---EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEE-EEeCCCCCceEE
Confidence 3556555554 21 111 1111234567899999876555544 556789999987533221 211111112344
Q ss_pred EecCCEEEEE-eCCCcEEEEecCCC
Q 012007 374 AAAGNLVFSG-SADRNICLWRREES 397 (473)
Q Consensus 374 ~~~~~~l~s~-~~dg~i~iwd~~~~ 397 (473)
+.++..|+.+ ...+.|...|..++
T Consensus 220 ~~~~~~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 220 TLFEDILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp EESSSEEEEECTTTCSEEEEESSSC
T ss_pred EEeCCEEEEecCCCCEEEEEECCCC
Confidence 5555555544 45678888888664
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.18 Score=45.35 Aligned_cols=187 Identities=12% Similarity=0.111 Sum_probs=91.4
Q ss_pred CCCEEEEEeC----C-----CCEEEEEcCCCeeeE--EeecCCCceeEEEEcCCCEEEEEeCC-----CcEEEEeCcccC
Q 012007 246 EQGLLYSGSW----D-----KTLKVWRISDCKCLE--SINAHDDAINSVVAGFDSLVFTGSAD-----GTVKVWRRELQG 309 (473)
Q Consensus 246 ~~~~l~s~s~----d-----g~v~vwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~l~s~~~d-----g~i~vwd~~~~~ 309 (473)
++.+++.|+. + ..+.+||+.+.+-.. .+......... +...+.+++.|+.+ ..+.+||+...
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~- 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV-GVIDGHIYAVGGSHGCIHHNSVERYEPERD- 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE-EEETTEEEEECCEETTEECCCEEEEETTTT-
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEE-EEECCEEEEEcCCCCCcccccEEEECCCCC-
Confidence 4556666654 2 468899987765322 22211112222 22233355555543 35778887632
Q ss_pred CCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC-----CcEEEEecCCcccc-cceeecCcceEEEEEecCCEEEEE
Q 012007 310 KGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD-----GLVNFWECEKHLSH-GGVLRGHKMAVLCLAAAGNLVFSG 383 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~ 383 (473)
.......+......-..+.+ ++.+++.|+.+ ..+.+||+.+..-. ...+........+...++.+++.|
T Consensus 148 ---~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G 222 (308)
T 1zgk_A 148 ---EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAG 222 (308)
T ss_dssp ---EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEC
T ss_pred ---eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEe
Confidence 22222222211222222333 56777777654 45888988653211 111111111223334577888888
Q ss_pred eCC-----CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCC-----CcEEEEEcC
Q 012007 384 SAD-----RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLD-----KSVKVWRVS 453 (473)
Q Consensus 384 ~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~D-----g~v~iW~i~ 453 (473)
+.+ ..+.+||+.+ ..+..+..+...... .+++.. ++. +++.|+.+ ..|.+||+.
T Consensus 223 G~~~~~~~~~v~~yd~~~-~~W~~~~~~p~~r~~-~~~~~~-~~~-------------i~v~GG~~~~~~~~~v~~yd~~ 286 (308)
T 1zgk_A 223 GYDGQDQLNSVERYDVET-ETWTFVAPMKHRRSA-LGITVH-QGR-------------IYVLGGYDGHTFLDSVECYDPD 286 (308)
T ss_dssp CBCSSSBCCCEEEEETTT-TEEEECCCCSSCCBS-CEEEEE-TTE-------------EEEECCBCSSCBCCEEEEEETT
T ss_pred CCCCCCccceEEEEeCCC-CcEEECCCCCCCccc-eEEEEE-CCE-------------EEEEcCcCCCcccceEEEEcCC
Confidence 765 4689999887 334443332221111 122222 333 67777754 347778876
Q ss_pred CC
Q 012007 454 EH 455 (473)
Q Consensus 454 ~~ 455 (473)
+.
T Consensus 287 ~~ 288 (308)
T 1zgk_A 287 TD 288 (308)
T ss_dssp TT
T ss_pred CC
Confidence 54
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=96.93 E-value=0.61 Score=50.18 Aligned_cols=184 Identities=12% Similarity=0.118 Sum_probs=94.3
Q ss_pred ccCCeeEEEEcCC------CCEEEEEeC-CCCEEEEEcCCCeeeEEeecC-CCceeEEEEc--CC-CEEEEEeCCCcEEE
Q 012007 234 HYDAVSCLSLNAE------QGLLYSGSW-DKTLKVWRISDCKCLESINAH-DDAINSVVAG--FD-SLVFTGSADGTVKV 302 (473)
Q Consensus 234 ~~~~v~~l~~~~~------~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~-~~~v~~l~~~--~~-~~l~s~~~dg~i~v 302 (473)
-...|.|+++.+. +.++++|.+ |++|+|+++.+.+.+...... .....++.+. .. -+|+.|-.||.+..
T Consensus 552 l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~ 631 (1158)
T 3ei3_A 552 MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFY 631 (1158)
T ss_dssp CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEE
Confidence 3557999998763 479999997 999999999887665443321 1233334322 12 27889999999877
Q ss_pred EeCcccCCCcceeeeeeeccCCccEEEEEEccCCC-EEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEec--CCE
Q 012007 303 WRRELQGKGTKHCLAQVLLKHENAVTALAVNQESA-VVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA--GNL 379 (473)
Q Consensus 303 wd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 379 (473)
+.+..... .-........+ ..++.-..+...+. .+++.+ +.-..+|.-+............-..+..|+.. .+-
T Consensus 632 ~~~d~~tg-~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g 708 (1158)
T 3ei3_A 632 FGLNIETG-LLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDS 708 (1158)
T ss_dssp EEECTTTC-CEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTE
T ss_pred EEEcCCCC-ccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcCCceEEeccChHHhceEeccCcccCCCc
Confidence 76542110 11111112222 23443333433332 333333 33333443332111100000001122333221 344
Q ss_pred EEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCC
Q 012007 380 VFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 380 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
++..+ ++.++|..+..... -.+..+. -...+..++++|+.+
T Consensus 709 ~v~~~-~~~LrI~~i~~~~~-~~~~~ip-L~~Tprri~y~~~~~ 749 (1158)
T 3ei3_A 709 LALAN-NSTLTIGTIDEIQK-LHIRTVP-LYESPRKICYQEVSQ 749 (1158)
T ss_dssp EEEEC-SSCEEEEEECCSSS-EEEEEEE-CSSEEEEEEEEGGGT
T ss_pred EEEEc-CCceEEEEecccCC-eeEEEEe-CCCCceEEEEcCCCC
Confidence 54444 45699998865332 2333332 245789999999877
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.25 Score=45.29 Aligned_cols=181 Identities=12% Similarity=0.110 Sum_probs=102.0
Q ss_pred CeeEEEEcCCCCEEEEE------------eCCCCEEEEEcCC--Ceee-EEeec-----CCCceeEEEEcC--CC--EEE
Q 012007 237 AVSCLSLNAEQGLLYSG------------SWDKTLKVWRISD--CKCL-ESINA-----HDDAINSVVAGF--DS--LVF 292 (473)
Q Consensus 237 ~v~~l~~~~~~~~l~s~------------s~dg~v~vwd~~~--~~~~-~~~~~-----~~~~v~~l~~~~--~~--~l~ 292 (473)
....+...++|..++++ ..+|.|.++|+.+ ++.. ..+.+ .......+.+.+ ++ +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 45667778876544443 1689999999873 2221 11222 123455666544 33 455
Q ss_pred EEeC---CCcEEEEeCcccCCCcceeeeeeecc-CCccEEEEEEccCCCEEEEeCC-----------------CCcEEEE
Q 012007 293 TGSA---DGTVKVWRRELQGKGTKHCLAQVLLK-HENAVTALAVNQESAVVYCGSS-----------------DGLVNFW 351 (473)
Q Consensus 293 s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~-----------------dg~i~iw 351 (473)
++.. +..|.+|++..... .........+ .-...+.+.+.++|.+.++... .|.|..+
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~--~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~ 208 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEK--SLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 208 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTT--EEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEECCCCCCeEEEEEEECCCC--EEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence 5432 46788888764332 2223333332 2346789999999988777541 2456556
Q ss_pred ecCCcccccceeec-CcceEEEEEecCCEEEEEe-CCCcEEEEecCCCCceeEEEEecCCCCceeEEEEec-CCC
Q 012007 352 ECEKHLSHGGVLRG-HKMAVLCLAAAGNLVFSGS-ADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEE-DRD 423 (473)
Q Consensus 352 d~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~ 423 (473)
|..+ ......+ ....-.++++|++.|+.+. ..+.|..|++...+.......+. ..+..-.+++.+ ++.
T Consensus 209 d~~~---~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 209 SPND---VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGD 279 (355)
T ss_dssp CTTC---CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCC
T ss_pred ECCe---EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCc
Confidence 5431 1112221 2233467888998777665 56889999987533222233332 245667888888 476
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.54 Score=48.32 Aligned_cols=272 Identities=13% Similarity=0.170 Sum_probs=146.3
Q ss_pred ccEEEEEec-CCEEEEeeCCCcEEEeeCCc-ccccccc------CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCe
Q 012007 124 GHIYSLAAS-GDLLYTGSDSKNIRVWKNLK-EFSGFKS------NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNA 195 (473)
Q Consensus 124 ~~V~~~~~~-g~~l~tg~~dg~i~vwd~~~-~~~~~~~------h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 195 (473)
..|.++..+ ...|..|+.+| |..++... .+..+.. ....|.++....++..|..|.. +-+..+|..++..
T Consensus 146 ~~i~~i~~d~~g~lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~ 223 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYVGTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQI 223 (758)
T ss_dssp SCEEEEEECTTCCEEEEETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEE
T ss_pred CeEEEEEEcCCCCEEEEeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeE
Confidence 357787776 33445566554 66676542 2221111 1234888988877766666654 3577788766543
Q ss_pred eeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee-
Q 012007 196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN- 274 (473)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~- 274 (473)
...... ....|.++....++.+ ..|+.+ -+.+++..+++......
T Consensus 224 ~~~~~l--------------------------------~~~~i~~i~~d~~g~l-WigT~~-Gl~~~~~~~~~~~~~~~~ 269 (758)
T 3ott_A 224 KQTEAF--------------------------------HNNSIKSLALDGNGDL-LAGTDN-GLYVYHNDTTPLQHIIHD 269 (758)
T ss_dssp EEEEEE--------------------------------EEEEEEEEEECTTCCE-EEEETT-EEEEECCTTSCCEEECCC
T ss_pred EeccCC--------------------------------CCCeEEEEEEcCCCCE-EEEeCC-ceeEEecCCCcEEEEEcC
Confidence 211100 1234778887777764 445544 58888876654322211
Q ss_pred ------cCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeee--eccCCccEEEEEEccCCCEEEEeCCCC
Q 012007 275 ------AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQV--LLKHENAVTALAVNQESAVVYCGSSDG 346 (473)
Q Consensus 275 ------~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~~~~~dg 346 (473)
.....|.++....++.|..|+..| +.++... .. ........ .......|.++....+|.+.+ |+.+|
T Consensus 270 ~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~~~~--~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G 344 (758)
T 3ott_A 270 SRNIQSLTNNIIWNIFADQEHNIWLGTDYG-ISLSRYN--SA-LQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG 344 (758)
T ss_dssp TTCTTSCSCSCEEEEEECTTCCEEEEESSS-EEEECCC--C--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE
T ss_pred CCCcCcCCcCeEEEEEEcCCCCEEEEeCCc-ccccccC--Cc-eeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc
Confidence 123468888888888777777777 5544321 10 00000000 011234688888888887654 44555
Q ss_pred cEEEEecCCccccc-ceee-------cCcceEEEEEec-CCEEEEEeCCCcEEEEecCCCCceeEEEEecC----CCCce
Q 012007 347 LVNFWECEKHLSHG-GVLR-------GHKMAVLCLAAA-GNLVFSGSADRNICLWRREESGAHSCLAVLTG----HTGPV 413 (473)
Q Consensus 347 ~i~iwd~~~~~~~~-~~~~-------~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----h~~~V 413 (473)
+..++..++.... ..+. -....|.++..+ ...|..|+ ++-|..|+..+.. ......... ....|
T Consensus 345 -l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~-~~~~~~~~~~~~~~~~~v 421 (758)
T 3ott_A 345 -LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQ-FIHYNIVDNTGTYNTNWT 421 (758)
T ss_dssp -EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTE-EEEEEEECCC--CBSSSE
T ss_pred -ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCc-EEEeecCCCcCCCCCceE
Confidence 5566654321110 0110 112357777766 33455666 4579999987632 222211111 12457
Q ss_pred eEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 414 KCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
.++....++. |..|+..+-|.+++..
T Consensus 422 ~~i~~d~~g~--------------lWigT~~~Gl~~~~~~ 447 (758)
T 3ott_A 422 YYIFEDTAGQ--------------LWISTCLGGIFVVDKH 447 (758)
T ss_dssp EEEEECTTSE--------------EEEEESSSCEEEEEHH
T ss_pred EEEEEcCCCC--------------EEEEECCCceEEEccc
Confidence 7777766654 5556666668888754
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.32 Score=43.84 Aligned_cols=152 Identities=11% Similarity=0.111 Sum_probs=75.2
Q ss_pred CCCCEEEEEeC----C-------CCEEEEEcCCCeeeE--EeecCCCceeEEEEcCCCEEEEEeCC--------CcEEEE
Q 012007 245 AEQGLLYSGSW----D-------KTLKVWRISDCKCLE--SINAHDDAINSVVAGFDSLVFTGSAD--------GTVKVW 303 (473)
Q Consensus 245 ~~~~~l~s~s~----d-------g~v~vwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~l~s~~~d--------g~i~vw 303 (473)
.++.+++.|+. + ..+.+||..+.+-.. .+...... .+++...+.+++.|+.+ ..+.+|
T Consensus 44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ 122 (315)
T 4asc_A 44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL-FGLGEALNSIYVVGGREIKDGERCLDSVMCY 122 (315)
T ss_dssp TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES-CEEEEETTEEEEECCEESSTTCCBCCCEEEE
T ss_pred ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc-eeEEEECCEEEEEeCCcCCCCCcccceEEEE
Confidence 46777777773 1 127788887765322 12111111 12222233355556532 458888
Q ss_pred eCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC-C-----CcEEEEecCCccc-ccceeecCcceEEEEEec
Q 012007 304 RRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-D-----GLVNFWECEKHLS-HGGVLRGHKMAVLCLAAA 376 (473)
Q Consensus 304 d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~ 376 (473)
|+... .......+.........+. -++++++.|+. + ..+.+||..+..- ....+........+...+
T Consensus 123 d~~~~----~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 196 (315)
T 4asc_A 123 DRLSF----KWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHD 196 (315)
T ss_dssp ETTTT----EEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEET
T ss_pred CCCCC----cEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEEC
Confidence 87632 2222222221122222222 35567777765 2 4688899875321 111111111222334457
Q ss_pred CCEEEEEeCCC-----cEEEEecCCCCceeEEE
Q 012007 377 GNLVFSGSADR-----NICLWRREESGAHSCLA 404 (473)
Q Consensus 377 ~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~ 404 (473)
+++++.|+.++ .+.+||..+ ..+..+.
T Consensus 197 ~~iyv~GG~~~~~~~~~~~~yd~~~-~~W~~~~ 228 (315)
T 4asc_A 197 GRIIVAAGVTDTGLTSSAEVYSITD-NKWAPFE 228 (315)
T ss_dssp TEEEEEEEECSSSEEEEEEEEETTT-TEEEEEC
T ss_pred CEEEEEeccCCCCccceEEEEECCC-CeEEECC
Confidence 88888887654 488889877 3344443
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.35 Score=43.58 Aligned_cols=144 Identities=10% Similarity=0.100 Sum_probs=71.5
Q ss_pred CCCEEEEEeCC--------CCEEEEEcCCCeeeE--EeecCCCceeEEEEcCCCEEEEEeC-C-----CcEEEEeCcccC
Q 012007 246 EQGLLYSGSWD--------KTLKVWRISDCKCLE--SINAHDDAINSVVAGFDSLVFTGSA-D-----GTVKVWRRELQG 309 (473)
Q Consensus 246 ~~~~l~s~s~d--------g~v~vwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~l~s~~~-d-----g~i~vwd~~~~~ 309 (473)
++.+++.|+.+ ..+.+||+.+.+-.. .+...... .+++...+.+++.|+. + ..+.+||+...
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~- 175 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKF- 175 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEETTEEEEECCBCTTSCBCCCEEEEETTTT-
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEEECCEEEEEeCCCCCCcccceEEEEeCCCC-
Confidence 45666666632 458899998764322 22211111 2223333445666665 2 46888887632
Q ss_pred CCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC-----cEEEEecCCcccc-cceeecCcceEEEEEecCCEEEEE
Q 012007 310 KGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG-----LVNFWECEKHLSH-GGVLRGHKMAVLCLAAAGNLVFSG 383 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~ 383 (473)
.......+........++.+ ++++++.|+.++ .+.+||+.+..-. ...+........+...++++++.|
T Consensus 176 ---~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~G 250 (315)
T 4asc_A 176 ---EWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIG 250 (315)
T ss_dssp ---EEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEE
T ss_pred ---eEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEECCEEEEEC
Confidence 22222222211222222222 567777776554 4788888753211 111111111223344577888888
Q ss_pred eCCC--------------cEEEEecCC
Q 012007 384 SADR--------------NICLWRREE 396 (473)
Q Consensus 384 ~~dg--------------~i~iwd~~~ 396 (473)
+.++ .|.+||+.+
T Consensus 251 G~~~~~~~~~~~~~~~~~~v~~yd~~~ 277 (315)
T 4asc_A 251 GFATLETESGELVPTELNDIWRYNEEE 277 (315)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEETTT
T ss_pred CccccCcCCccccccccCcEEEecCCC
Confidence 7642 366788776
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.22 Score=45.76 Aligned_cols=139 Identities=12% Similarity=0.024 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCeeeE--EeecCCCceeEEEEcCCCEEEEEeC------CCcEEEEeCcccCCCcceeeeeeeccCCccEE
Q 012007 257 KTLKVWRISDCKCLE--SINAHDDAINSVVAGFDSLVFTGSA------DGTVKVWRRELQGKGTKHCLAQVLLKHENAVT 328 (473)
Q Consensus 257 g~v~vwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~ 328 (473)
..+.+||+.+.+-.. .+......-.+++...+.+++.|+. ...+.+||+.... ........+........
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~--~~W~~~~~~~~~~~~~~ 245 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNN--LKWNKLAPVSSPDGVAG 245 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC-----CEEEECCCSSTTTCCBS
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCC--CcEEecCCCCCCccccc
Confidence 478999988765332 2221111112333334445555553 3456677762111 12222222211111111
Q ss_pred EEEEccCCCEEEEeCCC----------------------CcEEEEecCCcccc-cceeecCcceEEEEEecCCEEEEEeC
Q 012007 329 ALAVNQESAVVYCGSSD----------------------GLVNFWECEKHLSH-GGVLRGHKMAVLCLAAAGNLVFSGSA 385 (473)
Q Consensus 329 ~l~~~~~~~~l~~~~~d----------------------g~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~~~ 385 (473)
..+...++.+++.|+.+ ..+.+||+.+..-. ...+........++..++++++.|+.
T Consensus 246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~ 325 (357)
T 2uvk_A 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGE 325 (357)
T ss_dssp CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEE
T ss_pred ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeee
Confidence 11222356677777632 24778888753211 11111112222345568888888886
Q ss_pred CC------cEEEEecCCC
Q 012007 386 DR------NICLWRREES 397 (473)
Q Consensus 386 dg------~i~iwd~~~~ 397 (473)
++ .|.++++++.
T Consensus 326 ~~~~~~~~~v~~l~~~~~ 343 (357)
T 2uvk_A 326 TAGGKAVTDSVLITVKDN 343 (357)
T ss_dssp CGGGCEEEEEEEEEC-CC
T ss_pred CCCCCEeeeEEEEEEcCc
Confidence 53 3555677763
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.39 Score=43.32 Aligned_cols=153 Identities=8% Similarity=0.054 Sum_probs=72.5
Q ss_pred cCCCCEEEEEeC----CC-------CEEEEEcCCCeeeE--EeecCCCceeEEEEcCCCEEEEEeCC-------CcEEEE
Q 012007 244 NAEQGLLYSGSW----DK-------TLKVWRISDCKCLE--SINAHDDAINSVVAGFDSLVFTGSAD-------GTVKVW 303 (473)
Q Consensus 244 ~~~~~~l~s~s~----dg-------~v~vwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~l~s~~~d-------g~i~vw 303 (473)
..++.+++.|+. ++ .+.+||..+.+-.. .+...... .+++...+.+++.|+.+ ..+.+|
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~y 132 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-FGLGEVDDKIYVVAGKDLQTEASLDSVLCY 132 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-CEEEEETTEEEEEEEEBTTTCCEEEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-cceEEECCEEEEEcCccCCCCcccceEEEE
Confidence 346677777773 11 17788887765332 12211111 22222333455566543 246777
Q ss_pred eCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC------CCcEEEEecCCcccc-cceeecCcceEEEEEec
Q 012007 304 RRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS------DGLVNFWECEKHLSH-GGVLRGHKMAVLCLAAA 376 (473)
Q Consensus 304 d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~ 376 (473)
|+... .......+......-. ++. .++.+++.|+. -..+.+||+.+..-. ............+...+
T Consensus 133 d~~~~----~W~~~~~~p~~r~~~~-~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 206 (318)
T 2woz_A 133 DPVAA----KWSEVKNLPIKVYGHN-VIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHK 206 (318)
T ss_dssp ETTTT----EEEEECCCSSCEESCE-EEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEET
T ss_pred eCCCC----CEeECCCCCCcccccE-EEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEEC
Confidence 77532 2222111111111111 222 35667777764 235889998753211 11111111112334457
Q ss_pred CCEEEEEeCC-----CcEEEEecCCCCceeEEE
Q 012007 377 GNLVFSGSAD-----RNICLWRREESGAHSCLA 404 (473)
Q Consensus 377 ~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~ 404 (473)
+.+++.|+.+ ..+.+||+.+. .+..+.
T Consensus 207 ~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~ 238 (318)
T 2woz_A 207 GKIVIAGGVTEDGLSASVEAFDLKTN-KWEVMT 238 (318)
T ss_dssp TEEEEEEEEETTEEEEEEEEEETTTC-CEEECC
T ss_pred CEEEEEcCcCCCCccceEEEEECCCC-eEEECC
Confidence 7888887754 34778888773 344443
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.054 Score=45.53 Aligned_cols=106 Identities=6% Similarity=-0.085 Sum_probs=60.4
Q ss_pred eeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee------EEe-ecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCC
Q 012007 238 VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL------ESI-NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGK 310 (473)
Q Consensus 238 v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~------~~~-~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~ 310 (473)
-.++.|.++|.+.++ .||.|+-++-.+...- ..+ ..--..+..|.+.|++.|.+.. |+.+.-+.......
T Consensus 90 F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~ 166 (236)
T 1tl2_A 90 FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQ 166 (236)
T ss_dssp CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTT
T ss_pred ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCCC
Confidence 478999999987777 4698887775331110 111 1122467899999999888888 88854332221110
Q ss_pred Ccceeeeeeec-cCCccEEEEEEccCCCEEEEeCCCCcE
Q 012007 311 GTKHCLAQVLL-KHENAVTALAVNQESAVVYCGSSDGLV 348 (473)
Q Consensus 311 ~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~dg~i 348 (473)
..-......+. ..-...+-+.|.+++.+.++. +|.+
T Consensus 167 ~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 167 DNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp CCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred cccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 00000111111 222344557799999877776 6644
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.59 Score=43.69 Aligned_cols=197 Identities=11% Similarity=0.123 Sum_probs=128.3
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeee
Q 012007 241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVL 320 (473)
Q Consensus 241 l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 320 (473)
.-.+|..+.++.-. ..++.|+|+++.+.+..+.-.+ .|.-=.|-.+..|+..+ +..|.-|++.... .+.+.+
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~lVT-~taVyHWsi~~~s-----~P~kvF 142 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT-DNAVYHWSMEGES-----QPVKMF 142 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEEEC-SSEEEEEESSSSC-----CCEEEE
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEEEc-CCeeEEecccCCC-----Cchhhe
Confidence 34677777666655 6789999999999988887555 45555565555554443 5689999986421 222222
Q ss_pred ccC----CccEEEEEEccCCCEEEEeCC-------CCcEEEEecCCcccccceeecCcceEEEEEecCC-----EEEEEe
Q 012007 321 LKH----ENAVTALAVNQESAVVYCGSS-------DGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGN-----LVFSGS 384 (473)
Q Consensus 321 ~~~----~~~v~~l~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~l~s~~ 384 (473)
..| ...|..-..+++.++++..+- .|.+.+|..+.. ..+.+.||...-..+..+|+ +++-+.
T Consensus 143 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~--~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~ 220 (494)
T 1bpo_A 143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKMEGNAEESTLFCFAV 220 (494)
T ss_dssp ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC--CEEEECCSEEEEEEEECTTCSSEEEEEEEEE
T ss_pred ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc--ccchheeeeeeeEEEecCCCCCCceEEEEEE
Confidence 222 466888888899988765432 467899998764 44578888887777766643 444444
Q ss_pred CC---CcEEEEecCCCCc------eeEEEEecC---CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 385 AD---RNICLWRREESGA------HSCLAVLTG---HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 385 ~d---g~i~iwd~~~~~~------~~~~~~~~~---h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
.. +.++|-++..... .+.+..+-. -.+--.++..++... +++.-..-|.|.++|+
T Consensus 221 r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg-------------viyviTK~G~i~lyDl 287 (494)
T 1bpo_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-------------VVFLITKYGYIHLYDL 287 (494)
T ss_dssp CSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT-------------EEEEEETTSEEEEEET
T ss_pred ecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC-------------EEEEEecCceEEEEec
Confidence 32 7899999865310 111111111 133345677777666 7888889999999999
Q ss_pred CCCCCCcc
Q 012007 453 SEHAPDLK 460 (473)
Q Consensus 453 ~~~~~~~~ 460 (473)
.++.....
T Consensus 288 eTgt~i~~ 295 (494)
T 1bpo_A 288 ETGTCIYM 295 (494)
T ss_dssp TTCCEEEE
T ss_pred ccceeeee
Confidence 98875443
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.54 Score=43.21 Aligned_cols=104 Identities=7% Similarity=0.082 Sum_probs=60.1
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee--eEEee---cCCCceeEEEEcCC----CEEEEEeC-C-----CcE
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC--LESIN---AHDDAINSVVAGFD----SLVFTGSA-D-----GTV 300 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~--~~~~~---~~~~~v~~l~~~~~----~~l~s~~~-d-----g~i 300 (473)
.....|+|.|+|++ +++..+|.|.+++ +++. +..+. ........|+++|+ +.|+.+.. . +.|
T Consensus 31 ~~P~~ia~~pdG~l-~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGM-LIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCE-EEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeE-EEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 45678999999984 5556679999998 4442 22221 12356789999998 55554433 2 567
Q ss_pred EEEeCcccCCCcceeeeeeec---cCCccEEEEEEccCCCEEEEe
Q 012007 301 KVWRRELQGKGTKHCLAQVLL---KHENAVTALAVNQESAVVYCG 342 (473)
Q Consensus 301 ~vwd~~~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~~~ 342 (473)
..|+...........+...+. ........|+|.|+|.++++.
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 777765211001111122122 111223689999999766654
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.31 Score=45.45 Aligned_cols=111 Identities=7% Similarity=0.066 Sum_probs=74.5
Q ss_pred cCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecC----CCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcc------
Q 012007 244 NAEQGLLYSGSWDKTLKVWRISDCKCLESINAH----DDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTK------ 313 (473)
Q Consensus 244 ~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~----~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~------ 313 (473)
..++..++.+- ++.||.-++......+.+... -..|..+..+|+|.+++...+..|.|..+..+.....
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccc
Confidence 34666666665 478888888754444555433 2357889999999666666778999998863221111
Q ss_pred --eeeeeeecc----CCccEEEEEEccC---CCEEEEeCCCCcEEEEecCC
Q 012007 314 --HCLAQVLLK----HENAVTALAVNQE---SAVVYCGSSDGLVNFWECEK 355 (473)
Q Consensus 314 --~~~~~~~~~----~~~~v~~l~~~~~---~~~l~~~~~dg~i~iwd~~~ 355 (473)
......+.. ...+|..+.|||- +..|++-..|+.|++||+..
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 000111111 3577999999994 56899999999999999985
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.17 Score=46.53 Aligned_cols=157 Identities=8% Similarity=0.073 Sum_probs=84.4
Q ss_pred ceeEEEEcCCCEEEEEe-------------CCCcEEEEeCcccCCCcceeeeee---eccCCccEEEEEEcc--CCC--E
Q 012007 279 AINSVVAGFDSLVFTGS-------------ADGTVKVWRRELQGKGTKHCLAQV---LLKHENAVTALAVNQ--ESA--V 338 (473)
Q Consensus 279 ~v~~l~~~~~~~l~s~~-------------~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~~~v~~l~~~~--~~~--~ 338 (473)
....+...+++.+++++ .+|.|.++|...... ....+... .....-....|.+.+ ++. +
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~-~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEP-AVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSC-CEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCC-ceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 44566677788777665 689999999863221 11111111 111234567777765 343 4
Q ss_pred EEEeCC--CCcEEEEecCCccc---ccceeecCc---ceEEEEEecCCEEEEEeC-----------------CCcEEEEe
Q 012007 339 VYCGSS--DGLVNFWECEKHLS---HGGVLRGHK---MAVLCLAAAGNLVFSGSA-----------------DRNICLWR 393 (473)
Q Consensus 339 l~~~~~--dg~i~iwd~~~~~~---~~~~~~~~~---~~v~~~~~~~~~l~s~~~-----------------dg~i~iwd 393 (473)
+++-.. +..|.+|++..... +.....+.. ..-..+.++|.+.++... .|.|..++
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 444333 56788887754221 111222211 122445567877776541 23344444
Q ss_pred cCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 394 REESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 394 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
. +. ...+ ...-..-+.|+|+||++. +.++-+..+.|..|++..
T Consensus 210 ~--~~-~~~~---~~~l~~pNGia~spDg~~------------lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 210 P--ND-VRVV---AEGFDFANGINISPDGKY------------VYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp T--TC-CEEE---EEEESSEEEEEECTTSSE------------EEEEEGGGTEEEEEEECT
T ss_pred C--Ce-EEEe---ecCCcccCcceECCCCCE------------EEEEeCCCCeEEEEEECC
Confidence 3 21 1211 111234689999999973 455555678899999874
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.15 Score=42.84 Aligned_cols=110 Identities=5% Similarity=-0.100 Sum_probs=65.3
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee------eEEeec-CCCceeEEEEcCCCEEEEEeCCCcEEEEeCccc
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC------LESINA-HDDAINSVVAGFDSLVFTGSADGTVKVWRRELQ 308 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~------~~~~~~-~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~ 308 (473)
..+.+++|+|++.+.++ .+|.++-.+..+... -..+-. --....++.+.+++.|.++ .||.|.-++....
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQS 117 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCS
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcC
Confidence 47789999998885555 567766666544211 111110 1112478899999977777 6798887775332
Q ss_pred CCCcceee-eeeeccCCccEEEEEEccCCCEEEEeCCCCcEEE
Q 012007 309 GKGTKHCL-AQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350 (473)
Q Consensus 309 ~~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~i 350 (473)
+...-... ...-..-=..+..|.+.|+|.+.++. |+.++-
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr 158 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK 158 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence 22111000 01111112467999999999988777 777543
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=1.4 Score=43.90 Aligned_cols=191 Identities=11% Similarity=0.096 Sum_probs=104.1
Q ss_pred EEEEEec--CCEEEEe-eCCCcEEEeeCCcc---ccccccCcccEEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCCeeeE
Q 012007 126 IYSLAAS--GDLLYTG-SDSKNIRVWKNLKE---FSGFKSNSGLVKAIIISGDSNKIFTG-HQDGKIRIWKVSRKNASVH 198 (473)
Q Consensus 126 V~~~~~~--g~~l~tg-~~dg~i~vwd~~~~---~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~ 198 (473)
..+++++ +..|+.+ ...+.|..++.... ...+...-.....|++...+..|+.+ ...+.|.+.+++.......
T Consensus 42 ~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l 121 (619)
T 3s94_A 42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL 121 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred eEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEE
Confidence 4455544 5555544 44667877775432 11222223568899999866555554 4568899999876542211
Q ss_pred EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC--CCEEEEEcCCCeeeEEeecC
Q 012007 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD--KTLKVWRISDCKCLESINAH 276 (473)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d--g~v~vwd~~~~~~~~~~~~~ 276 (473)
.. ........|+++|.+.+|+...+. +.|...++............
T Consensus 122 ~~--------------------------------~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~ 169 (619)
T 3s94_A 122 FW--------------------------------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE 169 (619)
T ss_dssp EC--------------------------------SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred Ee--------------------------------CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCC
Confidence 10 122345679999977777776643 55666666433222222233
Q ss_pred CCceeEEEEcCC-CEEE-EEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC
Q 012007 277 DDAINSVVAGFD-SLVF-TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 277 ~~~v~~l~~~~~-~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 354 (473)
-...+.|++.++ +.|+ +-...+.|...|+.... ...+......| ...|++..+ .++++-...+.|...|..
T Consensus 170 ~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~---~~~~~~~~~~~---P~gi~~~~~-~ly~td~~~~~V~~~d~~ 242 (619)
T 3s94_A 170 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN---RQAVVKGSLPH---PFALTLFED-ILYWTDWSTHSILACNKY 242 (619)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCE---EC------------CCCEEESSS-EEEEECTTTCSEEEEESS
T ss_pred CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCc---cEEEEeCCCCC---ceEEEEeCC-EEEEecCCCCEEEEEECC
Confidence 456788999875 4444 44556778888875321 11111111122 245666655 444444556778777765
Q ss_pred C
Q 012007 355 K 355 (473)
Q Consensus 355 ~ 355 (473)
+
T Consensus 243 t 243 (619)
T 3s94_A 243 T 243 (619)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.89 Score=40.87 Aligned_cols=144 Identities=10% Similarity=0.101 Sum_probs=70.2
Q ss_pred CCCEEEEEeCC-------CCEEEEEcCCCeeeEE--eecCCCceeEEEEcCCCEEEEEeC------CCcEEEEeCcccCC
Q 012007 246 EQGLLYSGSWD-------KTLKVWRISDCKCLES--INAHDDAINSVVAGFDSLVFTGSA------DGTVKVWRRELQGK 310 (473)
Q Consensus 246 ~~~~l~s~s~d-------g~v~vwd~~~~~~~~~--~~~~~~~v~~l~~~~~~~l~s~~~------dg~i~vwd~~~~~~ 310 (473)
++.+++.|+.+ ..+.+||+.+.+-... +...... .+++...+.+++.|+. -..+.+||+...
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~-- 185 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG-HNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKG-- 185 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES-CEEEEETTEEEEECCEESSSCBCCCEEEEETTTT--
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc-cEEEEECCEEEEEcCCCCCCCccceEEEEcCCCC--
Confidence 56677777754 2478888877653322 2111111 1222223335555553 235888888642
Q ss_pred CcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC-----CcEEEEecCCccc-ccceeecCcceEEEEEecCCEEEEEe
Q 012007 311 GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD-----GLVNFWECEKHLS-HGGVLRGHKMAVLCLAAAGNLVFSGS 384 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~l~s~~ 384 (473)
.......+........++.+ ++++++.|+.+ ..+.+||+.+..- ....+........+...++.+++.|+
T Consensus 186 --~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG 261 (318)
T 2woz_A 186 --DWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGG 261 (318)
T ss_dssp --EEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred --EEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEECCEEEEECC
Confidence 22222222111121222222 56677777643 3467888875321 11111111222234456778888877
Q ss_pred CC--------------CcEEEEecCC
Q 012007 385 AD--------------RNICLWRREE 396 (473)
Q Consensus 385 ~d--------------g~i~iwd~~~ 396 (473)
.+ ..+.+||+.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~v~~yd~~~ 287 (318)
T 2woz_A 262 FAMIQLESKEFAPTEVNDIWKYEDDK 287 (318)
T ss_dssp BCCBC----CCBCCBCCCEEEEETTT
T ss_pred eeccCCCCceeccceeeeEEEEeCCC
Confidence 54 3477888876
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=95.90 E-value=0.85 Score=40.35 Aligned_cols=219 Identities=14% Similarity=0.165 Sum_probs=113.8
Q ss_pred EEEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecc
Q 012007 126 IYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGS 203 (473)
Q Consensus 126 V~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 203 (473)
|..++......+.-. ||.|..|-.. ..+..-......|..|+...+. .++. . ||.|..|-.......-
T Consensus 26 i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg------ 95 (282)
T 3qhy_B 26 VDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTT------ 95 (282)
T ss_dssp CCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTC------
T ss_pred CcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCC------
Confidence 345554444333334 7888888422 1111111123467777775443 3333 4 9999999765432211
Q ss_pred ccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEE
Q 012007 204 LPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV 283 (473)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l 283 (473)
.|. .-...|..++.... ..+.-. ||.|+.|-....-.+-.-......|..+
T Consensus 96 ~P~--------------------------~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i 146 (282)
T 3qhy_B 96 VPA--------------------------EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTAL 146 (282)
T ss_dssp CCG--------------------------GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEE
T ss_pred CCc--------------------------ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEE
Confidence 000 01235666665543 333334 8899999765422221111123457777
Q ss_pred EEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccccee
Q 012007 284 VAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVL 363 (473)
Q Consensus 284 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 363 (473)
+......++. . ||.|..|-........ ........|..++......++ . .||.|..|-....-++...
T Consensus 147 ~~G~~~~~~l-~-~G~v~~wG~n~~gqlg------~p~~~~~~v~~i~~G~~hs~a-l--~~G~v~~wG~n~~gqlg~p- 214 (282)
T 3qhy_B 147 DGGVYTALAV-K-NGGVIAWGDNYFGQTT------VPAEAQSGVDDVAGGIFHSLA-L--KDGKVIAWGDNRYKQTTVP- 214 (282)
T ss_dssp EECSSEEEEE-E-TTEEEEEECCTTSTTS------CCGGGGSSEEEEEECSSEEEE-E--ETTEEEEEECCTTSTTCCC-
T ss_pred EcccCEEEEE-E-CCEEEEecCCCCCCCC------CceecCCCeEEEEecCCEEEE-E--ECCeEEEEECCCCCCCCCC-
Confidence 7655544443 3 7999999765432211 011113467777765543333 3 5999999976543222111
Q ss_pred ecCcceEEEEEecCCEEEEEeCCCcEEEEecCC
Q 012007 364 RGHKMAVLCLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 364 ~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
......+..++....+.++-. ||.|..|=...
T Consensus 215 ~~~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 215 TEALSGVSAIASGEWYSLALK-NGKVIAWGSSR 246 (282)
T ss_dssp GGGGSSCCEEEECSSCEEEEE-TTEEEEESTTC
T ss_pred cccCCCceEEEcCCCEEEEEE-CCEEEEecCCC
Confidence 111234566665555544455 99999997665
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=1.1 Score=45.39 Aligned_cols=147 Identities=8% Similarity=0.056 Sum_probs=77.3
Q ss_pred CCCEEEEEeCC------CCEEEEEcCCCeee--EEeecCCCceeEEEEcCCCEEEEEeCCC--cEEEEeCcccCCCccee
Q 012007 246 EQGLLYSGSWD------KTLKVWRISDCKCL--ESINAHDDAINSVVAGFDSLVFTGSADG--TVKVWRRELQGKGTKHC 315 (473)
Q Consensus 246 ~~~~l~s~s~d------g~v~vwd~~~~~~~--~~~~~~~~~v~~l~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~ 315 (473)
++.+++.|+.+ ..+.+||+.+.+-. ..+......-.++.+..+.+++.|+.++ .+.+||+... .+.
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~----~W~ 526 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEE----IFK 526 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTT----EEE
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCC----ceE
Confidence 66677777643 35888998875432 2222222222222323444666776654 6888988642 222
Q ss_pred eeee---eccCCccEEEEEEccC-CCEEEEeCC--C-----CcEEEEecCCccc-----ccceee---cCcceEEEEEec
Q 012007 316 LAQV---LLKHENAVTALAVNQE-SAVVYCGSS--D-----GLVNFWECEKHLS-----HGGVLR---GHKMAVLCLAAA 376 (473)
Q Consensus 316 ~~~~---~~~~~~~v~~l~~~~~-~~~l~~~~~--d-----g~i~iwd~~~~~~-----~~~~~~---~~~~~v~~~~~~ 376 (473)
.... .........++.+..+ +.+++.|+. + ..+.+||+.+..- -..... .......+...+
T Consensus 527 ~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~ 606 (695)
T 2zwa_A 527 DVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYIT 606 (695)
T ss_dssp ECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEE
T ss_pred EccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeC
Confidence 2221 1112222234555555 667777765 2 3588899876541 001100 111122333445
Q ss_pred -CCEEEEEeCC--------CcEEEEecCC
Q 012007 377 -GNLVFSGSAD--------RNICLWRREE 396 (473)
Q Consensus 377 -~~~l~s~~~d--------g~i~iwd~~~ 396 (473)
+.+++.|+.+ ..|.+||..+
T Consensus 607 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 607 PRKLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp TTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred CCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence 7888888743 4589999987
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=95.61 E-value=1.1 Score=39.59 Aligned_cols=224 Identities=18% Similarity=0.146 Sum_probs=121.1
Q ss_pred ccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE
Q 012007 162 GLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL 241 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 241 (473)
..|..|+.... ..+.-. ||.|..|-.......-. |. .....|..+
T Consensus 24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~------p~--------------------------~~~~~i~~i 68 (282)
T 3qhy_B 24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTM------PA--------------------------ATQSGVDAI 68 (282)
T ss_dssp SSCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSC------CG--------------------------GGGSCCCEE
T ss_pred CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCC------Cc--------------------------cCCCCEEEE
Confidence 35777776544 333335 99999997654322110 00 022346666
Q ss_pred EEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeec
Q 012007 242 SLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLL 321 (473)
Q Consensus 242 ~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 321 (473)
+...... ++. . ||.|+.|-....-.+..-..-...|..++......++. . ||.|..|-........ ...
T Consensus 69 a~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~hs~al-~-~G~v~~wG~n~~gqlg------~~~ 137 (282)
T 3qhy_B 69 AAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYAL-K-DGKVIAWGDDSDGQTT------VPA 137 (282)
T ss_dssp EECSSEE-EEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTEEEEE-E-TTEEEEEECCTTSTTS------CCG
T ss_pred EeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCEEEEE-e-CCeEEEecCCCCCcCC------CCc
Confidence 6544332 222 4 88898887654222111111124677777765554444 4 9999999765332211 111
Q ss_pred cCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCc-e
Q 012007 322 KHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGA-H 400 (473)
Q Consensus 322 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~ 400 (473)
.....|..++......+++ . ||.|..|-.....++. ....-...+..++.-..+.++- .||.|..|=....+. .
T Consensus 138 ~~~~~i~~i~~G~~~~~~l--~-~G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg 212 (282)
T 3qhy_B 138 EAQSGVTALDGGVYTALAV--K-NGGVIAWGDNYFGQTT-VPAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTT 212 (282)
T ss_dssp GGGSSEEEEEECSSEEEEE--E-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTC
T ss_pred cCCCCeEEEEcccCEEEEE--E-CCEEEEecCCCCCCCC-CceecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCC
Confidence 1234577777654433332 3 7999999765432221 1111234577777766655555 699999997654221 1
Q ss_pred eEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 401 SCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 401 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
.+. .....|..|+...... ++.. ||.|..|--....
T Consensus 213 ~p~----~~~~~v~~i~~G~~h~--------------~al~--~g~v~~wG~n~~g 248 (282)
T 3qhy_B 213 VPT----EALSGVSAIASGEWYS--------------LALK--NGKVIAWGSSRTA 248 (282)
T ss_dssp CCG----GGGSSCCEEEECSSCE--------------EEEE--TTEEEEESTTCCC
T ss_pred CCc----ccCCCceEEEcCCCEE--------------EEEE--CCEEEEecCCCCc
Confidence 111 1123577777655432 3333 9999999876654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=95.57 E-value=0.99 Score=48.81 Aligned_cols=196 Identities=11% Similarity=0.112 Sum_probs=117.6
Q ss_pred EEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeec
Q 012007 242 SLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLL 321 (473)
Q Consensus 242 ~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 321 (473)
-.+|..+.++.-. ..++.|+|+++.+.+..+.-.. .|.-=.|-....|+..+ +..|.-|++... ..+...+.
T Consensus 72 IMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~l~lVT-~~aVyHW~~~~~-----s~P~k~fd 143 (1630)
T 1xi4_A 72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT-DNAVYHWSMEGE-----SQPVKMFD 143 (1630)
T ss_pred ccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCCeeEEEc-CCeEEEeccCCC-----CccHHHHh
Confidence 3567666666554 6789999999888777766444 45555666665444443 567999998631 12223333
Q ss_pred cC----CccEEEEEEccCCCEEEEeC-------CCCcEEEEecCCcccccceeecCcceEEEEEecC-----CEEEEEeC
Q 012007 322 KH----ENAVTALAVNQESAVVYCGS-------SDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAG-----NLVFSGSA 385 (473)
Q Consensus 322 ~~----~~~v~~l~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~s~~~ 385 (473)
.| ...|..-..+++.++++..+ -.|.+.+|..+.. ..+.+.||...-..+..+| .+++-+..
T Consensus 144 R~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~--~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~ 221 (1630)
T 1xi4_A 144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKMEGNAEESTLFCFAVR 221 (1630)
T ss_pred cchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc--cchhhhHhHhhhheeccCCCCCCceEEEEEEe
Confidence 33 46677788888888876533 3578999998764 3346667766554444332 22222221
Q ss_pred ---CCcEEEEecCCCCcee-E-----EEEecC---CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 386 ---DRNICLWRREESGAHS-C-----LAVLTG---HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 386 ---dg~i~iwd~~~~~~~~-~-----~~~~~~---h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
.+.++|-++....... . +..+-. -.+--.++..++... +++..+.-|.|.++|+.
T Consensus 222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-------------~iy~itk~G~~~~~d~~ 288 (1630)
T 1xi4_A 222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-------------VVFLITKYGYIHLYDLE 288 (1630)
T ss_pred cCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC-------------EEEEEecCceEEEEecc
Confidence 2688898886530111 0 001111 122233455555544 78888889999999999
Q ss_pred CCCCCcc
Q 012007 454 EHAPDLK 460 (473)
Q Consensus 454 ~~~~~~~ 460 (473)
++.....
T Consensus 289 t~~~i~~ 295 (1630)
T 1xi4_A 289 TGTCIYM 295 (1630)
T ss_pred cchhhhh
Confidence 8876544
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.24 E-value=1.7 Score=39.55 Aligned_cols=232 Identities=11% Similarity=0.100 Sum_probs=118.0
Q ss_pred cEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEE
Q 012007 163 LVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS 242 (473)
Q Consensus 163 ~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 242 (473)
....|+|.|||+++++--..|.|++++...+.......+... ..........|+
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v--------------------------~~~g~~GllGia 86 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGV--------------------------SPSGEGGLLGIA 86 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTC--------------------------CCBTTBSEEEEE
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCce--------------------------eecCCCCceeeE
Confidence 467999999998777655489999998655543221111100 001345678899
Q ss_pred EcCC---CCEEEEE---eCCCCEEEEEcCCC----------eee-EEee-cCCCceeEEEEcCCCEEEEE-eC-------
Q 012007 243 LNAE---QGLLYSG---SWDKTLKVWRISDC----------KCL-ESIN-AHDDAINSVVAGFDSLVFTG-SA------- 296 (473)
Q Consensus 243 ~~~~---~~~l~s~---s~dg~v~vwd~~~~----------~~~-~~~~-~~~~~v~~l~~~~~~~l~s~-~~------- 296 (473)
++|+ +..|+.. ..++.|.-|.+..+ +.+ ..+. ........|.|.+++.|+.+ +.
T Consensus 87 ~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~ 166 (347)
T 3das_A 87 LSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLS 166 (347)
T ss_dssp ECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGT
T ss_pred eccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccc
Confidence 9985 4555553 23455666665441 111 1222 11224567899999844433 21
Q ss_pred ------CCcEEEEeCcccCCCcce----eeeeeeccCCccEEEEEEccCCCEEEEeC-CCCcEEEEecCCcc--------
Q 012007 297 ------DGTVKVWRRELQGKGTKH----CLAQVLLKHENAVTALAVNQESAVVYCGS-SDGLVNFWECEKHL-------- 357 (473)
Q Consensus 297 ------dg~i~vwd~~~~~~~~~~----~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~-------- 357 (473)
.|.|.-.+.. +..... .......+|.. ...++|+|++.+.++-. .|+.=.|.-+..+.
T Consensus 167 qd~~~~~G~IlRi~~d--G~ip~~nPf~~~~i~a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~ 243 (347)
T 3das_A 167 QDRKSLGGKILRMTPD--GEPAPGNPFPGSPVYSYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAE 243 (347)
T ss_dssp TCTTCSTTCEEEECTT--SSBCTTCSSTTCCEEEBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCC
T ss_pred cCCCCCCCEEEEEeCC--CCccCCCCCCCCeEEeeCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCccc
Confidence 2444444433 210000 01122234433 46799999887665432 23222222111111
Q ss_pred ---------cccceeecCcceEEEEEe-cCCEEEEEeCCCcEEEEecCCCCc-eeEEEEecCCCCceeEEEEecCCC
Q 012007 358 ---------SHGGVLRGHKMAVLCLAA-AGNLVFSGSADRNICLWRREESGA-HSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 358 ---------~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
.+...+..+......+.+ .|.+++..-..+.|....+...+. .+....+.+..+.+.+|+..||+.
T Consensus 244 g~~~~~~~~~P~~~~~~~~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~ 320 (347)
T 3das_A 244 GKGGGSGFHDPVAQWSTDEASPSGIAYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDK 320 (347)
T ss_dssp SSCCCTTCCCCSEEECTTTCCEEEEEEETTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTE
T ss_pred CCCCCccccCCcEecCCCCCCCcceEEEcCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCc
Confidence 011111112123344444 466666666666777667665321 122334455557899999999987
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.18 E-value=1.9 Score=39.55 Aligned_cols=31 Identities=16% Similarity=0.110 Sum_probs=22.8
Q ss_pred ccEEEEEEcc-------CCCEEEEeCCCCcEEEEecCC
Q 012007 325 NAVTALAVNQ-------ESAVVYCGSSDGLVNFWECEK 355 (473)
Q Consensus 325 ~~v~~l~~~~-------~~~~l~~~~~dg~i~iwd~~~ 355 (473)
..+..++|.. ++.++++....+.|...+++.
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~ 308 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNG 308 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEET
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCC
Confidence 4677888864 467777777788888887764
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.07 E-value=1.1 Score=40.89 Aligned_cols=148 Identities=14% Similarity=0.099 Sum_probs=81.3
Q ss_pred eecCCCceeEEEEcCCCEEEEEeC-CCcEEEEeCcccCCCccee-eeeeeccCCccEEEEEEccC---CCEEEEe---CC
Q 012007 273 INAHDDAINSVVAGFDSLVFTGSA-DGTVKVWRRELQGKGTKHC-LAQVLLKHENAVTALAVNQE---SAVVYCG---SS 344 (473)
Q Consensus 273 ~~~~~~~v~~l~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~v~~l~~~~~---~~~l~~~---~~ 344 (473)
+-..-...+.|++.|++.++++.. .|.|++++...+.. .... ..............|+++|+ +..|++. ..
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~-~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK-TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE-eeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 333445678999999996666666 89999987542211 0000 00112234567899999995 3445443 23
Q ss_pred CCcEEEEecCCcc-------ccccee------ecCcceEEEEEecCCEEEEEeC-------------CCcEEEEecCCCC
Q 012007 345 DGLVNFWECEKHL-------SHGGVL------RGHKMAVLCLAAAGNLVFSGSA-------------DRNICLWRREESG 398 (473)
Q Consensus 345 dg~i~iwd~~~~~-------~~~~~~------~~~~~~v~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~~ 398 (473)
++.|.-|.+.... ....++ ..|...-+.+.++|.+.++.+. .|.|.-.+....-
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i 185 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP 185 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence 4556666554310 011111 2466666788888987777542 2444444443210
Q ss_pred ----c--eeEEEEecCCCCceeEEEEecCCC
Q 012007 399 ----A--HSCLAVLTGHTGPVKCLAVEEDRD 423 (473)
Q Consensus 399 ----~--~~~~~~~~~h~~~V~~l~~~~~~~ 423 (473)
. ...+. -.+|.. ...++|+|++.
T Consensus 186 p~~nPf~~~~i~-a~G~RN-p~Gla~dp~G~ 214 (347)
T 3das_A 186 APGNPFPGSPVY-SYGHRN-VQGLAWDDKQR 214 (347)
T ss_dssp CTTCSSTTCCEE-EBCCSB-CCEEEECTTCC
T ss_pred cCCCCCCCCeEE-eeCCCC-cceEEECCCCC
Confidence 0 11122 235543 57899999765
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=2.3 Score=38.92 Aligned_cols=200 Identities=4% Similarity=-0.054 Sum_probs=98.8
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCCcc--cccc---ccCcccEEEEEEeCC---CCEEEEEeC----C----CeEEEEeCC
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNLKE--FSGF---KSNSGLVKAIIISGD---SNKIFTGHQ----D----GKIRIWKVS 191 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~~~--~~~~---~~h~~~V~~l~~s~~---~~~l~s~~~----d----g~i~vwd~~ 191 (473)
++.++|++++ +..+|.|++++.... +..+ .........|+++|+ +..|+.+.. + ..|..|+..
T Consensus 35 a~~pdG~l~V-~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~ 113 (354)
T 3a9g_A 35 APLGGGRYLV-TERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLD 113 (354)
T ss_dssp EEEETTEEEE-EETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEEC
T ss_pred EEcCCCeEEE-EeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEEC
Confidence 4456677444 455699999874322 1111 112356889999997 555555443 2 567677765
Q ss_pred CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC-------------CC
Q 012007 192 RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD-------------KT 258 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d-------------g~ 258 (473)
......... . . ++. . .-.........|+|.|+|.+.++.+.. |.
T Consensus 114 ~~~~~~~~~-~------~----------l~~--~----~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~ 170 (354)
T 3a9g_A 114 GSTFKLKEV-K------T----------LID--G----IPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGK 170 (354)
T ss_dssp SSSCCEEEE-E------E----------EEE--E----EECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSE
T ss_pred CCCcCcCcc-E------E----------EEE--c----CCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeE
Confidence 431100000 0 0 000 0 000011124679999999866664321 34
Q ss_pred EEEEEcCCCee--------eEEe-ecCCCceeEEEEcC-CCEEEEEeCCC----cEEEEeCcccCCC------------c
Q 012007 259 LKVWRISDCKC--------LESI-NAHDDAINSVVAGF-DSLVFTGSADG----TVKVWRRELQGKG------------T 312 (473)
Q Consensus 259 v~vwd~~~~~~--------~~~~-~~~~~~v~~l~~~~-~~~l~s~~~dg----~i~vwd~~~~~~~------------~ 312 (473)
|.-++.. ++. ...+ .++ .....+++.+ ++.|+++.... .|.+.. .+... .
T Consensus 171 I~ri~~d-G~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~ 246 (354)
T 3a9g_A 171 ILRVDEE-GRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGE 246 (354)
T ss_dssp EEEECTT-SCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTT
T ss_pred EEEEcCC-CCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCC
Confidence 4444432 220 1111 123 2346788988 56555554332 233332 11100 0
Q ss_pred ceeeeeeeccCCccEEEEEEc-------cCCCEEEEeCCCCcEEEEecCC
Q 012007 313 KHCLAQVLLKHENAVTALAVN-------QESAVVYCGSSDGLVNFWECEK 355 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~-------~~~~~l~~~~~dg~i~iwd~~~ 355 (473)
.................++|. .++.++++....+.|...++..
T Consensus 247 ~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~ 296 (354)
T 3a9g_A 247 FVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD 296 (354)
T ss_dssp SCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred CcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence 001111221223467888883 4677777777778888888874
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.64 Score=42.22 Aligned_cols=107 Identities=9% Similarity=0.012 Sum_probs=63.3
Q ss_pred CEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE
Q 012007 174 NKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG 253 (473)
Q Consensus 174 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~ 253 (473)
..++.++.||.|.-.|..+++..-........ ..+ ...... .+.+..++.+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~---p~~-------------------~~~~~~-------~~~~~~~~vv 61 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQ---PLI-------------------EIQEPS-------RLETYETLII 61 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSC---CSE-------------------ECCCSC-------TTTSSEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccC---CcE-------------------EecCCc-------cccCCcEEEE
Confidence 37888999999999999988776655432000 000 000000 0122234433
Q ss_pred --eCCCCEEEEEcCCCeeeEEeecC----CCceeE---EEE------cCCCEEEEEeCCCcEEEEeCcccC
Q 012007 254 --SWDKTLKVWRISDCKCLESINAH----DDAINS---VVA------GFDSLVFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 254 --s~dg~v~vwd~~~~~~~~~~~~~----~~~v~~---l~~------~~~~~l~s~~~dg~i~vwd~~~~~ 309 (473)
+.||.|..++..+|.....+... ..++.. ..+ +.++.+++|+.+|.+...|++++.
T Consensus 62 ~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~ 132 (339)
T 2be1_A 62 EPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE 132 (339)
T ss_dssp CCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCC
T ss_pred EECCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCc
Confidence 57999999999888655444321 112221 001 246789999999999999988654
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.15 Score=46.46 Aligned_cols=144 Identities=15% Similarity=0.100 Sum_probs=78.4
Q ss_pred CEEEEEeCCCCEEEEEcCCCeeeEEeecC-CCceeEEEE---cCCCEEEEE--eCCCcEEEEeCcccCCCcceeeeeeec
Q 012007 248 GLLYSGSWDKTLKVWRISDCKCLESINAH-DDAINSVVA---GFDSLVFTG--SADGTVKVWRRELQGKGTKHCLAQVLL 321 (473)
Q Consensus 248 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~v~~l~~---~~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~~ 321 (473)
.+++.++.||.|.-+|..+|+.+..++.. ..++....- ..++.++.+ +.||.|..++...+.. .........
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~--~~~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQ--KLPLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEE--EEEEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcE--Eeeeccccc
Confidence 57899999999999999999999988754 122222110 013344444 5899999998764311 111100000
Q ss_pred cCCccEEE---EEE-c----cCCCEEEEeCCCCcEEEEecCCcccccceeecCcc------eEEEEE-------ecCCEE
Q 012007 322 KHENAVTA---LAV-N----QESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKM------AVLCLA-------AAGNLV 380 (473)
Q Consensus 322 ~~~~~v~~---l~~-~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~v~~~~-------~~~~~l 380 (473)
-...++.. ..+ . ..+..+++|+.+|.+...|++++...-..-.+... ...|.. -.+..|
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v 168 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI 168 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence 11122221 000 0 14567889999999999999887655332222111 011111 124567
Q ss_pred EEEeCCCcEEEEe
Q 012007 381 FSGSADRNICLWR 393 (473)
Q Consensus 381 ~s~~~dg~i~iwd 393 (473)
+.+..+..+.+.+
T Consensus 169 ~ig~~~y~v~~~~ 181 (339)
T 2be1_A 169 VIGKTIFELGIHS 181 (339)
T ss_dssp EEEEEEEECEECC
T ss_pred EEecceEEEEEEC
Confidence 7777676666665
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.50 E-value=3.4 Score=39.32 Aligned_cols=107 Identities=12% Similarity=0.168 Sum_probs=58.2
Q ss_pred cEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEE
Q 012007 163 LVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS 242 (473)
Q Consensus 163 ~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 242 (473)
....|+|.|+|+++++-...+.|++++..++.......+..... ..........|+
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~------------------------~~~g~~Gllgia 83 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVN------------------------DADGQNGLLGFA 83 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCC------------------------CTTSSCSEEEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCcccc------------------------ccCCCCceeEEE
Confidence 45699999999877764433578888765444322211111000 000245677899
Q ss_pred EcCC---CCEEEEEeC-------------CCCEEEEEcCCC-------eeeE-Eeec-CCCceeEEEEcCCCEEEE
Q 012007 243 LNAE---QGLLYSGSW-------------DKTLKVWRISDC-------KCLE-SINA-HDDAINSVVAGFDSLVFT 293 (473)
Q Consensus 243 ~~~~---~~~l~s~s~-------------dg~v~vwd~~~~-------~~~~-~~~~-~~~~v~~l~~~~~~~l~s 293 (473)
|+|+ +..|+.+.. ...|.-+++... +.+. .+.. .......|+|.+++.|+.
T Consensus 84 ~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv 159 (454)
T 1cru_A 84 FHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYY 159 (454)
T ss_dssp ECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEE
T ss_pred ECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEE
Confidence 9996 666666542 134555555321 1111 1221 223578899999994443
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=2.6 Score=42.70 Aligned_cols=149 Identities=9% Similarity=0.101 Sum_probs=75.0
Q ss_pred CCCCEEEEEeCC----CCEEEEEcCCCeeeEEe--------ecCCCceeEEEEc-CCCEEEEEeCC------CcEEEEeC
Q 012007 245 AEQGLLYSGSWD----KTLKVWRISDCKCLESI--------NAHDDAINSVVAG-FDSLVFTGSAD------GTVKVWRR 305 (473)
Q Consensus 245 ~~~~~l~s~s~d----g~v~vwd~~~~~~~~~~--------~~~~~~v~~l~~~-~~~~l~s~~~d------g~i~vwd~ 305 (473)
.++.+++.|+.+ ..+.+||..+.+-...- ......-..+.+. .+.+++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456677777753 45889998776533222 1111122223332 33356666643 34778887
Q ss_pred cccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC--cEEEEecCCcccccce----eecCc--ceEEEEEec-
Q 012007 306 ELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG--LVNFWECEKHLSHGGV----LRGHK--MAVLCLAAA- 376 (473)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~----~~~~~--~~v~~~~~~- 376 (473)
... .+.....+...... .+++...++.+++.|+.++ .+.+||..+..-.... ..... .....+..+
T Consensus 476 ~t~----~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 476 KTR----EWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp TTT----EEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred CCC----cEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence 632 22222222211122 2233323778888887655 6899998753211100 11011 111222333
Q ss_pred CCEEEEEeC--C-----CcEEEEecCCCC
Q 012007 377 GNLVFSGSA--D-----RNICLWRREESG 398 (473)
Q Consensus 377 ~~~l~s~~~--d-----g~i~iwd~~~~~ 398 (473)
+.+++.|+. + +.+.+||+.+..
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 667777775 2 358899998744
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=94.36 E-value=3.4 Score=38.69 Aligned_cols=254 Identities=13% Similarity=0.149 Sum_probs=146.5
Q ss_pred CCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceE
Q 012007 142 SKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYV 221 (473)
Q Consensus 142 dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (473)
+..|.|-|+...-...+. .-.-.+.-.+|..+.||-=. ...+.|+|+++........
T Consensus 47 ~~~vvIiDl~~~~~~~rr-pi~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~--------------------- 103 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRR-PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--------------------- 103 (494)
T ss_dssp CCEEEEEETTSTTSCEEE-ECCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEE---------------------
T ss_pred CCeEEEEECCCCCcceec-ccccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhccee---------------------
Confidence 346778787643222111 11112344677777666654 6789999999887655444
Q ss_pred EEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC-CeeeEEeecCC----CceeEEEEcCCC--EEEEE
Q 012007 222 EVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD-CKCLESINAHD----DAINSVVAGFDS--LVFTG 294 (473)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~----~~v~~l~~~~~~--~l~s~ 294 (473)
....|..-.|-.+. .|+-.+ +..|+-|++.. ..++..+..|. ..|..-..+++. .+++|
T Consensus 104 ------------~~e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~G 169 (494)
T 1bpo_A 104 ------------MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTG 169 (494)
T ss_dssp ------------CSSCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEE
T ss_pred ------------cCCCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEe
Confidence 34556667776544 444444 46899999964 34555665443 344445556665 33333
Q ss_pred e------CCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC---CEEEEeCC---CCcEEEEecCCcc----c
Q 012007 295 S------ADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES---AVVYCGSS---DGLVNFWECEKHL----S 358 (473)
Q Consensus 295 ~------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---~~l~~~~~---dg~i~iwd~~~~~----~ 358 (473)
- -.|.+.+|..+.. ..+.+.+|...-..+.+..+. .+++.+.. .+.++|.++.... .
T Consensus 170 I~~~~~~v~G~mQLYS~er~-------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~ 242 (494)
T 1bpo_A 170 ISAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQP 242 (494)
T ss_dssp EEEETTEEEEEEEEEESTTC-------CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCC
T ss_pred ecccCCcccceEEEeecccc-------ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCC
Confidence 2 2477889987521 235566665544444333211 23333322 3789999985431 0
Q ss_pred cc----ceeec----CcceE-EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccc
Q 012007 359 HG----GVLRG----HKMAV-LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYH 429 (473)
Q Consensus 359 ~~----~~~~~----~~~~v-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~ 429 (473)
.. ..... ..-+| +.++..-..++.-+.-|.|++||+.+ ..++..-+--..+|..-+-.....
T Consensus 243 f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleT---gt~i~~nrIs~~~iF~t~~~~~~~------ 313 (494)
T 1bpo_A 243 FPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET---GTCIYMNRISGETIFVTAPHEATA------ 313 (494)
T ss_dssp CCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT---CCEEEEEECCSSCEEEEEEETTTT------
T ss_pred ccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEeccc---ceeeeeecccCCceEEecccCCCC------
Confidence 00 00000 11122 34445566788888999999999999 566766666667776666655544
Q ss_pred cCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 430 QKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 430 ~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
=++.....|.|.--.+.+.
T Consensus 314 -------Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 314 -------GIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp -------EEEEEETTCEEEEEEECTT
T ss_pred -------cEEEEccCceEEEEEEccc
Confidence 3666668888777666654
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.29 E-value=3.1 Score=37.94 Aligned_cols=138 Identities=10% Similarity=-0.006 Sum_probs=63.2
Q ss_pred CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC------CCcEEEEec--CCcc-cccceeecC--
Q 012007 298 GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS------DGLVNFWEC--EKHL-SHGGVLRGH-- 366 (473)
Q Consensus 298 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~------dg~i~iwd~--~~~~-~~~~~~~~~-- 366 (473)
..+.+||+... .......+......-.+++.. ++++++.|+. ...+.+||+ .+.. .....+...
T Consensus 168 ~~v~~yd~~~~----~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~ 242 (357)
T 2uvk_A 168 KFLLSFDPSTQ----QWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG 242 (357)
T ss_dssp CEEEEEETTTT----EEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC
T ss_pred ccEEEEeCCCC----cEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc
Confidence 46888887632 222222222111110222222 5566667664 235777876 3211 111111111
Q ss_pred cceEEEEEecCCEEEEEeCC----------------------CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCC
Q 012007 367 KMAVLCLAAAGNLVFSGSAD----------------------RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDH 424 (473)
Q Consensus 367 ~~~v~~~~~~~~~l~s~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 424 (473)
.....+...++.+++.|+.+ ..+.+||+.+ ..+..+..+......-.++ .-++.
T Consensus 243 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~-~~W~~~~~~p~~r~~~~~~--~~~~~- 318 (357)
T 2uvk_A 243 VAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHN-GKWDKSGELSQGRAYGVSL--PWNNS- 318 (357)
T ss_dssp CBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----CEEEEECSSCCBSSEEE--EETTE-
T ss_pred cccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCC-CceeeCCCCCCCcccceeE--EeCCE-
Confidence 11223455677888887742 2577899886 3455555544322222222 23444
Q ss_pred CcccccCCCccEEEEEeeCCC------cEEEEEcCCCC
Q 012007 425 DHEYHQKGDQRWTVYSGSLDK------SVKVWRVSEHA 456 (473)
Q Consensus 425 ~~~~~~~~~~~~~l~s~s~Dg------~v~iW~i~~~~ 456 (473)
+++.||.++ .|.++++..++
T Consensus 319 ------------i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 319 ------------LLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp ------------EEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred ------------EEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 777788653 34555776554
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.20 E-value=4 Score=38.86 Aligned_cols=109 Identities=5% Similarity=0.042 Sum_probs=60.6
Q ss_pred cCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee--EEeec------CCCceeEEEEcC----CCEEEEEeC------
Q 012007 235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL--ESINA------HDDAINSVVAGF----DSLVFTGSA------ 296 (473)
Q Consensus 235 ~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~--~~~~~------~~~~v~~l~~~~----~~~l~s~~~------ 296 (473)
-.....|+|.|+|+++++-...+.|++++..+++.. ..+.. ....+..|+++| ++.|+....
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345679999999986666544346888876555432 22221 235667899998 455554432
Q ss_pred -------CCcEEEEeCcccCC--Ccceeeeeeec-cCCccEEEEEEccCCCEEEEeC
Q 012007 297 -------DGTVKVWRRELQGK--GTKHCLAQVLL-KHENAVTALAVNQESAVVYCGS 343 (473)
Q Consensus 297 -------dg~i~vwd~~~~~~--~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~ 343 (473)
...|.-|+...... .....+...+. ........|+|.|+|.+.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 12444444432110 01111111111 1223478999999998777644
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=93.83 E-value=6.4 Score=42.85 Aligned_cols=253 Identities=13% Similarity=0.151 Sum_probs=130.9
Q ss_pred CcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEE
Q 012007 143 KNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVE 222 (473)
Q Consensus 143 g~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (473)
..|.|-|+...-...+- .-.--+.-.+|..+.||-=. ..++.|+|+++........
T Consensus 48 ~~vvIidl~~~~~~~rr-pi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~---------------------- 103 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRR-PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT---------------------- 103 (1630)
T ss_pred ceEEEEECCCCCCcccc-cccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccc----------------------
Confidence 36777776643222111 11112233566666665543 6789999998876544333
Q ss_pred EeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC-CeeeEEeecC----CCceeEEEEcCCC--EEEEEe
Q 012007 223 VRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD-CKCLESINAH----DDAINSVVAGFDS--LVFTGS 295 (473)
Q Consensus 223 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~----~~~v~~l~~~~~~--~l~s~~ 295 (473)
....|.--.|-.+.. |+-.+ +..|+-|++.. ..++..+..| ...|..-..+++. .+++|-
T Consensus 104 -----------~~e~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi 170 (1630)
T 1xi4_A 104 -----------MTDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI 170 (1630)
T ss_pred -----------cCCCceEEEecCCCe-eEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEee
Confidence 345666777765544 33333 35799999964 3444444433 2345444555555 333332
Q ss_pred ------CCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEc--cCC-CEEEEeC---CCCcEEEEecCCc---c-cc
Q 012007 296 ------ADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVN--QES-AVVYCGS---SDGLVNFWECEKH---L-SH 359 (473)
Q Consensus 296 ------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~-~~l~~~~---~dg~i~iwd~~~~---~-~~ 359 (473)
-.|.+.+|..+.. ..+.+.+|...-..+... +.. .+++.+. ..+.++|.++... . ..
T Consensus 171 ~~~~~~v~G~mQLyS~er~-------~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f 243 (1630)
T 1xi4_A 171 SAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 243 (1630)
T ss_pred ccCCCcccceeeeeecccc-------cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCC
Confidence 3578889987522 223444554443333332 111 1222221 1368999888543 0 00
Q ss_pred ----cceeec----CcceE-EEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCccccc
Q 012007 360 ----GGVLRG----HKMAV-LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQ 430 (473)
Q Consensus 360 ----~~~~~~----~~~~v-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~ 430 (473)
...... ..-+| +.++..-..+..-+.-|.|.+||+.+ ..++..-+-...+|...+-.....
T Consensus 244 ~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t---~~~i~~~ris~~~iF~~~~~~~~~------- 313 (1630)
T 1xi4_A 244 PKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET---GTCIYMNRISGETIFVTAPHEATA------- 313 (1630)
T ss_pred ccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEeccc---chhhhhccccCCceEEeccCCCCC-------
Confidence 001111 11111 33344456777888899999999999 455544443444554444433322
Q ss_pred CCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 431 KGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 431 ~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
-++.....|.|.--.+.+.
T Consensus 314 ------g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 314 ------GIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred ------ceEEEcCCceEEEEEEccc
Confidence 1444446666655555443
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.42 E-value=15 Score=33.84 Aligned_cols=246 Identities=11% Similarity=0.088 Sum_probs=126.6
Q ss_pred cEEEEEecCCEEEEeeCCCcEEEeeCCc----------c---ccccc-cCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 125 HIYSLAASGDLLYTGSDSKNIRVWKNLK----------E---FSGFK-SNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 125 ~V~~~~~~g~~l~tg~~dg~i~vwd~~~----------~---~~~~~-~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
.|..++......+.-..||.|..|-... . ...+. .....+..++++......+.-..||.|..|-.
T Consensus 54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~ 133 (389)
T 3kci_A 54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGE 133 (389)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEEC
T ss_pred ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeC
Confidence 3556666666666667788888883210 0 00011 11234556677666667777788999999965
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEee--ccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC-
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR--HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC- 267 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~- 267 (473)
......-... .. .... ...+. ....|..++. .....+.-..||.|+.|-....
T Consensus 134 n~~GqLG~g~-----~~-----------~~~~------p~~v~~l~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~G 189 (389)
T 3kci_A 134 AEDGKLGHGN-----RS-----------PCDR------PRVIESLRGIEVVDVAA--GGAHSACVTAAGDLYTWGKGRYG 189 (389)
T ss_dssp CGGGTTCSSS-----CC-----------CEEE------EEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCGGG
T ss_pred CCCCcCCCCC-----Cc-----------cCcC------CeEecccCCCeEEEEEe--CcCeEEEEeCCCeEEEeCCCCCC
Confidence 4321100000 00 0000 00000 1123444444 3345556667888999965321
Q ss_pred e----------eeEEee-cCCCceeEEEEcC-CCEEEEEeCCCcEEEEeCcccCCC------cceeeeeeeccCCccEEE
Q 012007 268 K----------CLESIN-AHDDAINSVVAGF-DSLVFTGSADGTVKVWRRELQGKG------TKHCLAQVLLKHENAVTA 329 (473)
Q Consensus 268 ~----------~~~~~~-~~~~~v~~l~~~~-~~~l~s~~~dg~i~vwd~~~~~~~------~~~~~~~~~~~~~~~v~~ 329 (473)
+ ....+. .....|..++... +...+....||.|..|-....+.. ....+..........|..
T Consensus 190 qLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~ 269 (389)
T 3kci_A 190 RLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVK 269 (389)
T ss_dssp TTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEE
T ss_pred CcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEE
Confidence 0 111111 1233566776654 346666778999999965432210 111111111112234666
Q ss_pred EEEccCCCEEEEeCCCCcEEEEecCCcccc-----------cceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCC
Q 012007 330 LAVNQESAVVYCGSSDGLVNFWECEKHLSH-----------GGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 330 l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
++.... ..++-..||.|..|-....-++ ..+.......+..++....+.++-..||.|+.|=...
T Consensus 270 v~~G~~--hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 270 VECGSQ--FSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp EEEETT--EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred EeCCCC--EEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCC
Confidence 665433 3444567899999965432111 0011111234677777777777778899999997664
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=87.85 E-value=14 Score=32.75 Aligned_cols=126 Identities=9% Similarity=0.068 Sum_probs=62.2
Q ss_pred EEcCCCCEEEEEeC-CCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeee
Q 012007 242 SLNAEQGLLYSGSW-DKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQV 319 (473)
Q Consensus 242 ~~~~~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 319 (473)
.++++++.|+-.+. ...|.+.++..+.....+.. ... ..+.|++ .|+-...++.-+|+.....+.. . ..
T Consensus 151 ~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~----~~ 221 (302)
T 3s25_A 151 TCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-P----VV 221 (302)
T ss_dssp CSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-C----EE
T ss_pred EeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-e----EE
Confidence 45667777776654 57788888876654433332 222 2234554 5554443322344443322221 1 11
Q ss_pred eccCCccEEEEEEccCCCEEEEeC--CCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEe
Q 012007 320 LLKHENAVTALAVNQESAVVYCGS--SDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGS 384 (473)
Q Consensus 320 ~~~~~~~v~~l~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~ 384 (473)
+. ...+ ..|+|++.+|+-+. ..+.|..-++..... ..+..+ .+..+++.+.+|+-..
T Consensus 222 Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r-~~l~~~---~~~~i~i~~d~Iy~td 280 (302)
T 3s25_A 222 LT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTGF-KELAKG---EFCNINVTSQYVYFTD 280 (302)
T ss_dssp CS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCCC-EEEEES---CEEEEEECSSEEEEEE
T ss_pred Ee--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCcc-EEeeCC---ccceEEEeCCEEEEEE
Confidence 11 1223 33777888877652 245666666664322 122222 2345666666555443
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=86.76 E-value=15 Score=32.01 Aligned_cols=213 Identities=11% Similarity=0.102 Sum_probs=115.6
Q ss_pred ccccceeeeeeec---ccEEEEEe--cCCEEEEeeCCCcEEEeeCC-----ccccccccCcccEEEEEEeC--CCCEEEE
Q 012007 111 SCNGLIGSIVRKE---GHIYSLAA--SGDLLYTGSDSKNIRVWKNL-----KEFSGFKSNSGLVKAIIISG--DSNKIFT 178 (473)
Q Consensus 111 ~~~~~~~~l~~h~---~~V~~~~~--~g~~l~tg~~dg~i~vwd~~-----~~~~~~~~h~~~V~~l~~s~--~~~~l~s 178 (473)
+..+.++...+|. +.+..+.. ..+.|+..+.+|.++--... .... +......|..+.. . +..+++.
T Consensus 8 s~~Gwir~~~g~~~~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~-~~~~~~~~v~ 85 (276)
T 3no0_A 8 LQDGSIIPVEELPLEKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFI-REKFGNRLLL 85 (276)
T ss_dssp ETTSEEEEGGGCCSSCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEE-GGGSCSEEEE
T ss_pred cCCceeeeccCCCCCCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEEC-CcCCCCEEEE
Confidence 4556666777763 33544432 34556666777876653321 1111 2223456666644 4 4678999
Q ss_pred EeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCC
Q 012007 179 GHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKT 258 (473)
Q Consensus 179 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~ 258 (473)
.+.+|.|+-..+..-. .... ......+...+.+..+........++..+..|.
T Consensus 86 ~T~~G~iKr~~l~~~~-~~~~--------------------------G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~ 138 (276)
T 3no0_A 86 ATKKGYVKKIPLAEFE-YKAQ--------------------------GMPIIKLTEGDEVVSIASSVDETHILLFTKKGR 138 (276)
T ss_dssp EETTSEEEEEEGGGTT-TCST--------------------------TEECSCCCTTCCEEEEEECCSSCEEEEEETTSE
T ss_pred EeCCCEEEEEEHHHhh-hhcC--------------------------CeEEEecCCCCEEEEEEEeCCCCEEEEEECCCE
Confidence 9999999998875432 1000 000111123345555555556667888888999
Q ss_pred EEEEEcCC---------CeeeEEeecCCCceeEEE-EcCCCEEEEEeCCCcEEEEeCcccCCCcc-eeeeeeeccCCccE
Q 012007 259 LKVWRISD---------CKCLESINAHDDAINSVV-AGFDSLVFTGSADGTVKVWRRELQGKGTK-HCLAQVLLKHENAV 327 (473)
Q Consensus 259 v~vwd~~~---------~~~~~~~~~~~~~v~~l~-~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~v 327 (473)
+..+.... |.....+.. .+.|..+. ..++..++..+..|.++...+..-..... ..-...+ ...+.+
T Consensus 139 ~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~l 216 (276)
T 3no0_A 139 VARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTL 216 (276)
T ss_dssp EEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCE
T ss_pred EEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcE
Confidence 88887632 222223333 34455544 44455888999999999988753221110 0001111 223445
Q ss_pred EEEEEccCCCEEEEeCCCCcEEE--EecC
Q 012007 328 TALAVNQESAVVYCGSSDGLVNF--WECE 354 (473)
Q Consensus 328 ~~l~~~~~~~~l~~~~~dg~i~i--wd~~ 354 (473)
..+....+...++..+.+|.+.. ++..
T Consensus 217 v~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 217 VDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 44443333445666677777777 7654
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=85.90 E-value=27 Score=33.96 Aligned_cols=125 Identities=12% Similarity=-0.022 Sum_probs=73.1
Q ss_pred eeEEEEcCCC--EEEEEeCCCcEEEEeCcccCC-------CcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEE
Q 012007 280 INSVVAGFDS--LVFTGSADGTVKVWRRELQGK-------GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350 (473)
Q Consensus 280 v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~i 350 (473)
...+..+|+| .+++|-.+.++.++|++.-.. ........... -.......+|.++|....+...|..|.-
T Consensus 325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvk 403 (638)
T 3sbq_A 325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVK 403 (638)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEE
Confidence 4456788898 455666789999999873111 01111111222 3445678999999966667778999999
Q ss_pred EecCCcc---------cccceeecCcceEEEE-------EecCCEEEEEe---CCCc----------EEEEecCCCCcee
Q 012007 351 WECEKHL---------SHGGVLRGHKMAVLCL-------AAAGNLVFSGS---ADRN----------ICLWRREESGAHS 401 (473)
Q Consensus 351 wd~~~~~---------~~~~~~~~~~~~v~~~-------~~~~~~l~s~~---~dg~----------i~iwd~~~~~~~~ 401 (473)
|++.... .....+.-|-..-.-. .++|++|++.. .|.. -+++|+.. ...+
T Consensus 404 Wni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG-dkM~ 482 (638)
T 3sbq_A 404 WNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG-DEMK 482 (638)
T ss_dssp EEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS-SSCE
T ss_pred EeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC-CceE
Confidence 9986421 1222222232222211 35788998875 3543 36788765 3345
Q ss_pred EEEEe
Q 012007 402 CLAVL 406 (473)
Q Consensus 402 ~~~~~ 406 (473)
++...
T Consensus 483 lv~D~ 487 (638)
T 3sbq_A 483 LVHDG 487 (638)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 55443
|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=85.89 E-value=23 Score=33.10 Aligned_cols=243 Identities=8% Similarity=-0.002 Sum_probs=125.0
Q ss_pred cEEEEEecCCEEEEeeCCCcEEEeeCCc--c------------ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 125 HIYSLAASGDLLYTGSDSKNIRVWKNLK--E------------FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 125 ~V~~~~~~g~~l~tg~~dg~i~vwd~~~--~------------~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
.|..++..+...+.-..||.|..|-... . .-........|..|+.... ..+.-..||.|..|-.
T Consensus 76 ~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~--hs~al~~~G~v~~wG~ 153 (423)
T 3mvd_K 76 DAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDS--HSACLLEDGRVFAWGS 153 (423)
T ss_dssp SEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSS--EEEEEETTSCEEEEEC
T ss_pred CceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcC--eEEEEeCCCeEEEEeC
Confidence 4777887777777778899999993210 0 0000011245666665433 5556678999999975
Q ss_pred --CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCe
Q 012007 191 --SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK 268 (473)
Q Consensus 191 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~ 268 (473)
......-. .. .... .....+.....|..|+.. ....+.-..||.|+.|-....-
T Consensus 154 ~~n~~GqlG~---~~--~~~~-----------------~~p~~~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~G 209 (423)
T 3mvd_K 154 FRDSHGNMGL---TI--DGNK-----------------RTPIDLMEGTVCCSIASG--ADHLVILTTAGKVFTVGCAEQG 209 (423)
T ss_dssp EECSSSEEES---BT--TBCE-----------------EEEEESSTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTS
T ss_pred CCCCCCCcCc---CC--CCCC-----------------ceeeEecCCCcEEEEecC--CCeEEEEecCCeEEEeeCCcCC
Confidence 32211100 00 0000 000000122345555543 3455566778999999643211
Q ss_pred -----------------------eeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCC------cceeeeee
Q 012007 269 -----------------------CLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKG------TKHCLAQV 319 (473)
Q Consensus 269 -----------------------~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~------~~~~~~~~ 319 (473)
+..........|..++......++.-..+|.|..|-....... ........
T Consensus 210 qLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~ 289 (423)
T 3mvd_K 210 QLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPI 289 (423)
T ss_dssp TTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEE
T ss_pred ccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeE
Confidence 1111111223456666554444444478999999975432210 00001111
Q ss_pred eccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccc-----------cceeecCcceEEEEEecCCEEEEEeCCCc
Q 012007 320 LLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSH-----------GGVLRGHKMAVLCLAAAGNLVFSGSADRN 388 (473)
Q Consensus 320 ~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~l~s~~~dg~ 388 (473)
......|..|+... ...++-..||.|..|-....-++ ......-...+..++.-..+.++-..||.
T Consensus 290 -~~~~~~v~~ia~G~--~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~hs~alt~~G~ 366 (423)
T 3mvd_K 290 -KTELKDIRHIAGGQ--HHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGK 366 (423)
T ss_dssp -EECCCSEEEEEECS--SEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETTEEEEEETTSC
T ss_pred -EcCCCCeEEEEccc--CeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCCeEEEEcCCCC
Confidence 11134566666543 34445567899999965321111 00111111257777777777777788999
Q ss_pred EEEEecCC
Q 012007 389 ICLWRREE 396 (473)
Q Consensus 389 i~iwd~~~ 396 (473)
|+.|=...
T Consensus 367 v~~wG~n~ 374 (423)
T 3mvd_K 367 LYSWGSGV 374 (423)
T ss_dssp EEEEECCT
T ss_pred EEEECCCC
Confidence 99997654
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=84.45 E-value=21 Score=31.58 Aligned_cols=136 Identities=13% Similarity=0.145 Sum_probs=70.3
Q ss_pred EEcCCCCEEEEEe--CCC--CEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCccee
Q 012007 242 SLNAEQGLLYSGS--WDK--TLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHC 315 (473)
Q Consensus 242 ~~~~~~~~l~s~s--~dg--~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~ 315 (473)
.|++++++|+-.. .++ .|...++. +.....+..+.. ..+.+++ +.++......|.+-++.... ..
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d-Gs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~----~~ 180 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRID-GEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQS----EA 180 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETT-SCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTE----EE
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECC-CCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCC----EE
Confidence 5677888888765 334 45555554 333344443322 2233343 44444445677777764211 11
Q ss_pred eeeeeccCCccEEEEEEccCCCEEEEeCCC--CcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeC--CCcEEE
Q 012007 316 LAQVLLKHENAVTALAVNQESAVVYCGSSD--GLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSA--DRNICL 391 (473)
Q Consensus 316 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~--dg~i~i 391 (473)
. ... .... ..+.|++.+|+-...+ ..|..-++..... ..+.. ..+..+++++.+|+-+.. .+.|..
T Consensus 181 ~--l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~--~~Lt~--~~~~~~~~~g~~Iy~~~~~~~~~i~~ 250 (302)
T 3s25_A 181 L--FYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP--VVLTE--ANIEHYNVYGSLIFYQRGGDNPALCV 250 (302)
T ss_dssp E--EEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC--EECSC--SCEEEEEEETTEEEEEECSSSCEEEE
T ss_pred E--EeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe--EEEeC--CCcceEEECCCEEEEEECCCCcEEEE
Confidence 1 111 1222 3456888887765443 3566666654332 22222 234568999998876532 355666
Q ss_pred EecCC
Q 012007 392 WRREE 396 (473)
Q Consensus 392 wd~~~ 396 (473)
-+++.
T Consensus 251 ~~~DG 255 (302)
T 3s25_A 251 VKNDG 255 (302)
T ss_dssp EETTS
T ss_pred EECCC
Confidence 66655
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=82.86 E-value=15 Score=38.69 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=33.8
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN 274 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 274 (473)
..+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 356777888888999999999999999999999988753
|
| >3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=80.57 E-value=34 Score=31.27 Aligned_cols=159 Identities=16% Similarity=0.099 Sum_probs=87.9
Q ss_pred eCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCE
Q 012007 170 SGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGL 249 (473)
Q Consensus 170 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 249 (473)
-++..++++.+.+|.|+--.+..-...... .+......+...+.+..+........
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~------------------------g~g~~~~~lke~D~l~~~~~~~t~d~ 59 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRG------------------------GRGRSAASTKEEDFIDQLWLVNTHDT 59 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCC------------------------CCCSEEEECSCCCCEEEEEEECTTCE
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccC------------------------CCCceecccCCCCEEEEEEEecCCCE
Confidence 467778999999999986544221100000 00001111124556666666666677
Q ss_pred EEEEeCCCCEEEEEcC---------CCeeeEE---eecCCCceeEEEEc----CCCEEEEEeCCCcEEEEeCcccCCCc-
Q 012007 250 LYSGSWDKTLKVWRIS---------DCKCLES---INAHDDAINSVVAG----FDSLVFTGSADGTVKVWRRELQGKGT- 312 (473)
Q Consensus 250 l~s~s~dg~v~vwd~~---------~~~~~~~---~~~~~~~v~~l~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~- 312 (473)
|+..+..|.++-+... .|..+.. +. ....|.++... ++.+|+.++..|.++...+.......
T Consensus 60 ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~ 138 (370)
T 3l6v_A 60 LLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLA 138 (370)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCT
T ss_pred EEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccC
Confidence 7777778887766542 2333221 22 23455555432 33489999999999998875432211
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 354 (473)
.......+.. ...+..+....+...|+..+.+|.+..++..
T Consensus 139 ~G~~ai~L~~-~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 139 RGKIAINLDE-GDALVGVALTDGDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp TCEESSCCCT-TCCEEEEEEECSCCEEEEEETTSEEEEEEGG
T ss_pred CceEEEEeCC-CCEEEEEEEeCCCceEEEEeCCCeEEEEEcc
Confidence 1111222333 4455555555555667777888888877654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 473 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-21 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-19 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-18 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-14 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-18 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-14 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-08 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-17 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-10 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-17 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-14 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-16 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 9e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-15 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 8e-12 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 7e-08 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 5e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 6e-11 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.002 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.004 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-10 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 7e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.003 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 9e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 7e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 9e-08 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-04 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 93.3 bits (230), Expect = 1e-21
Identities = 57/326 (17%), Positives = 112/326 (34%), Gaps = 54/326 (16%)
Query: 157 FKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVN 216
+ V +I + + + +D I++W +L D V+
Sbjct: 13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-----DFERTLKGHTDSVQDISF 67
Query: 217 PKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQG---------------LLYSGSWDKTLKV 261
+ + + + I+ +D + G + S S DKT+K+
Sbjct: 68 DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 127
Query: 262 WRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVW-------RRELQG-KGT 312
W + C+++ H + + V D +L+ + S D TV+VW + EL+ +
Sbjct: 128 WEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV 187
Query: 313 KHCLA------QVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGH 366
C++ + + + GS D + W+ L GH
Sbjct: 188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGH 246
Query: 367 KMAVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDH 424
V + + G + S + D+ + +W + C+ L H V L + +
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK---RCMKTLNAHEHFVTSLDFHKTAPY 303
Query: 425 DHEYHQKGDQRWTVYSGSLDKSVKVW 450
V +GS+D++VKVW
Sbjct: 304 -------------VVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 85.6 bits (210), Expect = 4e-19
Identities = 54/310 (17%), Positives = 107/310 (34%), Gaps = 47/310 (15%)
Query: 123 EGH---IYSLAAS--GDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSNK 175
GH + + ++ + S+ I+VW + K ++ V+ I
Sbjct: 14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73
Query: 176 IFTGHQDGKIRIWKVSRKNAS--------VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNR 227
+ + D I++W V +P V +S + + +
Sbjct: 74 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 133
Query: 228 SVLKI--RHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVA 285
+K H + V + N + L+ S S D+T++VW ++ +C + H + +
Sbjct: 134 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISW 193
Query: 286 GFDS---------------------LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHE 324
+S + +GS D T+K+W T CL L+ H+
Sbjct: 194 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS-----TGMCL-MTLVGHD 247
Query: 325 NAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFS 382
N V + + + + D + W+ + L H+ V L V +
Sbjct: 248 NWVRGVLFHSGGKFILSCADDKTLRVWDYKN-KRCMKTLNAHEHFVTSLDFHKTAPYVVT 306
Query: 383 GSADRNICLW 392
GS D+ + +W
Sbjct: 307 GSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 84.0 bits (206), Expect = 1e-18
Identities = 49/292 (16%), Positives = 95/292 (32%), Gaps = 19/292 (6%)
Query: 62 YNNNSGTRTPTSGEASPYLMSPWNNQPVSPYTKSPWIMPPYSPNENLLSSCNGLIGSIVR 121
++ +G T + + + M + + G
Sbjct: 44 WDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN 103
Query: 122 KEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQ 181
+ + + + + F + V+ + + D I +
Sbjct: 104 VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN 163
Query: 182 DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL 241
D +R+W V+ K ++ + + S I
Sbjct: 164 DQTVRVWVVAT------------KECKAELREHRHVVECISWAPESSYSSISEATGSETK 211
Query: 242 SLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTV 300
L SGS DKT+K+W +S CL ++ HD+ + V+ + + + D T+
Sbjct: 212 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL 271
Query: 301 KVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWE 352
+VW + K C+ + L HE+ VT+L ++ + V GS D V WE
Sbjct: 272 RVWDYK-----NKRCM-KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 72.5 bits (176), Expect = 1e-14
Identities = 44/249 (17%), Positives = 88/249 (35%), Gaps = 19/249 (7%)
Query: 218 KNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHD 277
K ++ + L H V+ + + ++ S S D T+KVW ++ H
Sbjct: 1 KEWIPRPPEKYALS-GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT 59
Query: 278 DAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESA 337
D++ + + + + + H++ V+++++
Sbjct: 60 DSVQDISFDHSGKLLA-----SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD 114
Query: 338 VVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRRE 395
+ S D + WE + GH+ V + G L+ S S D+ + +W
Sbjct: 115 HIVSASRDKTIKMWEVQTG-YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 173
Query: 396 ESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRW-------TVYSGSLDKSVK 448
C A L H V+C++ + + G + + SGS DK++K
Sbjct: 174 T---KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 230
Query: 449 VWRVSEHAP 457
+W VS
Sbjct: 231 MWDVSTGMC 239
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 84.8 bits (208), Expect = 1e-18
Identities = 55/316 (17%), Positives = 100/316 (31%), Gaps = 49/316 (15%)
Query: 157 FKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVN 216
+ + + A+ DS + + QDGK+ IW +V ++P +V +
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT-----TNKVHAIPLRSSWVMTCAY 105
Query: 217 PKNYVEVRRNRSVLKIRHYDAVSCLSLNAE------------------QGLLYSGSWDKT 258
+ V Y+ + + + S D T
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165
Query: 259 LKVWRISDCKCLESINAHDDAINSVVAGF-DSLVFTGSADGTVKVWRRELQGKGTKHCLA 317
+W I + + H + S+ L +G+ D + K+W C
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR-----EGMCR- 219
Query: 318 QVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMA---VLCLA 374
Q HE+ + A+ GS D ++ + + + +
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS 279
Query: 375 AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQ 434
+G L+ +G D N +W ++ VL GH V CL V +D
Sbjct: 280 KSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGVTDDGMA---------- 326
Query: 435 RWTVYSGSLDKSVKVW 450
V +GS D +K+W
Sbjct: 327 ---VATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 72.5 bits (176), Expect = 1e-14
Identities = 28/174 (16%), Positives = 53/174 (30%), Gaps = 33/174 (18%)
Query: 133 GDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190
L +G+ + ++W + F + + AI + N TG D R++ +
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLL 250
+ ++ +S + LL
Sbjct: 256 RADQELMTYS------------------------------HDNIICGITSVSFSKSGRLL 285
Query: 251 YSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVW 303
+G D VW + HD+ ++ + D V TGS D +K+W
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 56.3 bits (134), Expect = 3e-09
Identities = 34/245 (13%), Positives = 77/245 (31%), Gaps = 19/245 (7%)
Query: 211 VKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL 270
+ ++++P +++R R L+ H + + + LL S S D L +W +
Sbjct: 33 ITNNIDPVGRIQMR-TRRTLR-GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV 90
Query: 271 ESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTAL 330
+I + + + L+ + +++ L H ++
Sbjct: 91 HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN-LKTREGNVRVSRELAGHTGYLSCC 149
Query: 331 AVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNIC 390
++ +V + + + L LA L SG+ D +
Sbjct: 150 RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 391 LWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVW 450
LW E C TGH + + + + +GS D + +++
Sbjct: 210 LWDVREG---MCRQTFTGHESDINAICFFPNGNA-------------FATGSDDATCRLF 253
Query: 451 RVSEH 455
+
Sbjct: 254 DLRAD 258
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 54.4 bits (129), Expect = 1e-08
Identities = 27/146 (18%), Positives = 47/146 (32%), Gaps = 38/146 (26%)
Query: 123 EGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKEFSGFKSNSGL----VKAIIISGDSNKI 176
E I ++ G+ TGSD R++ + + + ++ S +
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 177 FTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYD 236
G+ D +W + R G L H +
Sbjct: 286 LAGYDDFNCNVWDALKA-----DRAGVLA---------------------------GHDN 313
Query: 237 AVSCLSLNAEQGLLYSGSWDKTLKVW 262
VSCL + + + +GSWD LK+W
Sbjct: 314 RVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.6 bits (197), Expect = 3e-17
Identities = 58/316 (18%), Positives = 113/316 (35%), Gaps = 23/316 (7%)
Query: 123 EGH----IYSLAASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSNKI 176
+GH I L G+ + +GSD ++VW K ++G V + + +
Sbjct: 13 KGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIIS 72
Query: 177 FTGHQDGKIRIWKVSRKNASVHKRVGSL----PTFKDYVKSSVNPKNYVEVRRNRSVLKI 232
+ + K+ + +++ ++ K V S + V L +
Sbjct: 73 GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHV 132
Query: 233 RHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVF 292
+ + + + SG++D +KVW CL ++ H + + + V
Sbjct: 133 LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY-SLQFDGIHVV 191
Query: 293 TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWE 352
+GS D +++VW E L H++ + + + ++ G++D V W+
Sbjct: 192 SGSLDTSIRVWDVE------TGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWD 243
Query: 353 --CEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLT--G 408
+ L H+ AV CL N V + S D + LW + L L G
Sbjct: 244 IKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGG 303
Query: 409 HTGPVKCLAVEEDRDH 424
G V + +
Sbjct: 304 SGGVVWRIRASNTKLV 319
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.2 bits (144), Expect = 1e-10
Identities = 58/223 (26%), Positives = 80/223 (35%), Gaps = 31/223 (13%)
Query: 234 HYDAV-SCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVF 292
H D V +CL + SGS D TLKVW KCL ++ H + S
Sbjct: 15 HDDHVITCLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM------- 65
Query: 293 TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWE 352
+ + + + + T ++ V GS D + W+
Sbjct: 66 --RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWD 123
Query: 353 CEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGP 412
E VL GH AV C+ G V SG+ D + +W E +CL L GHT
Sbjct: 124 IE-TGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET---ETCLHTLQGHTNR 179
Query: 413 VKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455
V L + V SGSLD S++VW V
Sbjct: 180 VYSLQFDGIH---------------VVSGSLDTSIRVWDVETG 207
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 80.6 bits (197), Expect = 5e-17
Identities = 67/408 (16%), Positives = 122/408 (29%), Gaps = 56/408 (13%)
Query: 78 PYLMSPWNNQPVSPYTKSPWIMPPYSPNENLLSSCNGLI------------GSIVRKEGH 125
PY +++P+ P+ + S + L N + + H
Sbjct: 5 PYNQRANHSKPIPPFLLD---LDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDH 61
Query: 126 ---IYSLAAS--GDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGH 180
+ + S G+ L TG + K +V+ + + S S A + N +
Sbjct: 62 TSVVCCVKFSNDGEYLATGCN-KTTQVY-RVSDGSLVARLSDDSAANKDPENLNTSSSPS 119
Query: 181 QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC 240
D IR S G+ + + + + ++ +
Sbjct: 120 SDLYIRSVCFSPDGK--FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK 177
Query: 241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTV 300
L + L +V G + GS D V
Sbjct: 178 LV--------SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 229
Query: 301 KVWR-RELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEK---- 355
+VW + H+++V ++ ++ V GS D V W +
Sbjct: 230 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 289
Query: 356 -------HLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVL 406
+ GHK VL +A + SGS DR + W ++ + L +L
Sbjct: 290 SDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLML 346
Query: 407 TGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454
GH V +AV EY+ +GS D ++W+ +
Sbjct: 347 QGHRNSVISVAVANGSSLGPEYN-------VFATGSGDCKARIWKYKK 387
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.5 bits (176), Expect = 2e-14
Identities = 51/320 (15%), Positives = 88/320 (27%), Gaps = 48/320 (15%)
Query: 1 MTNEGGGAIVVKPNNNLHRPKFGSFLYPESVIFSPRNNNNQDDGDYYSGHRKSSASSTSP 60
A P N S LY SV FSP G ++ +
Sbjct: 97 ARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP------------DGKFLATGAEDRL 144
Query: 61 RYNNNSGTRTPTSGEASPYLMSPWNNQPVSPYTKSPWIMPPYSPNENLLSSCNGLIGSIV 120
+ R + S +L + L SI
Sbjct: 145 IRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE 204
Query: 121 RKEGHIYSLAASGDLLYTGSDSKNIRVW---------KNLKEFSGFKSNSGLVKAIIISG 171
+ G + GS + +RVW + E + V +++ +
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR 264
Query: 172 DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231
D + +G D +++W + N + V
Sbjct: 265 DGQSVVSGSLDRSVKLWNLQNANNKSD--------------------SKTPNSGTCEVTY 304
Query: 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-- 289
I H D V ++ + SGS D+ + W L + H +++ SV S
Sbjct: 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 364
Query: 290 -----LVFTGSADGTVKVWR 304
+ TGS D ++W+
Sbjct: 365 GPEYNVFATGSGDCKARIWK 384
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 77.6 bits (189), Expect = 5e-16
Identities = 46/390 (11%), Positives = 111/390 (28%), Gaps = 67/390 (17%)
Query: 123 EGH---IYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISG-------- 171
+ H I+S++A + S ++VW N + + + SG
Sbjct: 11 KAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70
Query: 172 -------DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKS------SVNPK 218
+ + T G + ++++R++ + L +K
Sbjct: 71 AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS 130
Query: 219 NYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDD 278
N + ++ + A++ + +W TL++ +ES
Sbjct: 131 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQG-----TVESPMTPSQ 185
Query: 279 AINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAV 338
SV L+ TG +GTV++ ++ + N++ ++ + + ++
Sbjct: 186 FATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL 245
Query: 339 VYCGSSDGLVNFWEC---------------EKHLSHGGVLRGHKMAVLCLA--AAGNLVF 381
+ H V+ L+ +G +
Sbjct: 246 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC 305
Query: 382 SGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEY------------- 428
S D + W + + L H ++ D +
Sbjct: 306 SAGWDGKLRFWDVKTK---ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK 362
Query: 429 -----HQKGDQRWTVYSGSLDKSVKVWRVS 453
D ++ LD+S++ +R +
Sbjct: 363 KGWRSGMGADLNESLCCVCLDRSIRWFREA 392
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.8 bits (122), Expect = 1e-07
Identities = 12/95 (12%), Positives = 31/95 (32%), Gaps = 9/95 (9%)
Query: 362 VLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAV---LTGHTGPVKCLAV 418
+ H + ++A + S S D + +W + + H + + V
Sbjct: 9 AGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68
Query: 419 EEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453
+ + D + V + S + +R++
Sbjct: 69 LQAIERDA------FELCLVATTSFSGDLLFYRIT 97
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.1 bits (97), Expect = 9e-05
Identities = 32/202 (15%), Positives = 59/202 (29%), Gaps = 27/202 (13%)
Query: 113 NGLIGSIVRKEGHIYSLAASGD-LLYTGSDSKNIRVWKNLKEFS--------GFKSNSGL 163
G + S + S+ S L+ TG ++ +++ + +NS
Sbjct: 174 QGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 233
Query: 164 VKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEV 223
++++ S + + H + S+PT
Sbjct: 234 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA------ 287
Query: 224 RRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV 283
H V LS N L S WD L+ W + + + ++N H D I
Sbjct: 288 ----------HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIE 337
Query: 284 VAG--FDSLVFTGSADGTVKVW 303
D + + G V
Sbjct: 338 EDILAVDEHGDSLAEPGVFDVK 359
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.9 bits (182), Expect = 1e-15
Identities = 45/284 (15%), Positives = 97/284 (34%), Gaps = 26/284 (9%)
Query: 126 IYSLAASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183
+Y L + +G I++W L+ ++G V + +
Sbjct: 18 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTV 77
Query: 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVR-------RNRSVLKIRHYD 236
++ ++ ++ + V + + ++ ++
Sbjct: 78 RVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH 137
Query: 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSA 296
+ ++ + + S S D+T+KVW S C+ + ++N H I + D LV +GS+
Sbjct: 138 RAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-DRLVVSGSS 196
Query: 297 DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE-- 354
D T+++W E C A + + + + ++ + G+ DG + W+
Sbjct: 197 DNTIRLWDIE--------CGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAA 248
Query: 355 ------KHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLW 392
L H V L + S S D I +W
Sbjct: 249 LDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.7 bits (153), Expect = 8e-12
Identities = 62/316 (19%), Positives = 109/316 (34%), Gaps = 40/316 (12%)
Query: 149 KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNA----SVHKR--VG 202
+L+ S V + D KI +G +D I+IW + + H +
Sbjct: 3 HSLQRIHCRSETSKGVYCL--QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC 60
Query: 203 SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVW 262
+ + S + V +L + + L L G++ + S D+++ VW
Sbjct: 61 LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW 120
Query: 263 RISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVL 320
++ + +V + + S D T+KVW + L
Sbjct: 121 DMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS------TCEFVRTL 174
Query: 321 LKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLV 380
H+ + L +V GSSD + W+ E + VL GH+ V C+ +
Sbjct: 175 NGHKRGIACLQYRDR--LVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIRFDNKRI 231
Query: 381 FSGSADRNICLW------RREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQ 434
SG+ D I +W CL L H+G V L +E +
Sbjct: 232 VSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ------------ 279
Query: 435 RWTVYSGSLDKSVKVW 450
+ S S D ++ +W
Sbjct: 280 ---IVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.4 bits (121), Expect = 7e-08
Identities = 41/224 (18%), Positives = 71/224 (31%), Gaps = 27/224 (12%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFT 293
V CL + + + SG D T+K+W + +C + H ++ + ++
Sbjct: 14 TSKGVYCLQYDDQ--KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITG 71
Query: 294 GSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWEC 353
S + T + +L N V V
Sbjct: 72 SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF-------NNGMMVTCSKDRSIAVWDMAS 124
Query: 354 EKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPV 413
++ VL GH+ AV + + S S DR I +W + L GH +
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTST---CEFVRTLNGHKRGI 181
Query: 414 KCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457
CL + V SGS D ++++W + A
Sbjct: 182 ACLQYRD---------------RLVVSGSSDNTIRLWDIECGAC 210
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (114), Expect = 5e-07
Identities = 20/86 (23%), Positives = 25/86 (29%), Gaps = 3/86 (3%)
Query: 354 EKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPV 413
L V CL + SG D I +W + C +LTGHTG V
Sbjct: 2 RHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNT---LECKRILTGHTGSV 58
Query: 414 KCLAVEEDRDHDHEYHQKGDQRWTVY 439
CL +E
Sbjct: 59 LCLQYDERVIITGSSDSTVRVWDVNT 84
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 66.0 bits (159), Expect = 2e-12
Identities = 56/380 (14%), Positives = 111/380 (29%), Gaps = 64/380 (16%)
Query: 126 IYSLAAS--GDLLYTGSDSKNIRVW----KNLKEFSGFKSNSGLVKAIIISGDSNKIFTG 179
I A + + ++ + ++ + K ++G V + + DSN+I T
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 180 HQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVL--------- 230
D +W + + + + V+ + N K + +R +
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129
Query: 231 -------KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD----------------- 266
K V L + LL +GS D +++
Sbjct: 130 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 189
Query: 267 -CKCLESINAHDDAINSVV-AGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHE 324
+ + ++ ++ V + S V S D TV + + +
Sbjct: 190 FGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA------SET 243
Query: 325 NAVTALAVNQESAVVYCGSSDGLVNFWECEKH--LSHGGVLRGHKMAVLCLAAAGNLVFS 382
+ A+ ES++V G V F LS GG L K +
Sbjct: 244 LPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQ--RGLTARERF 301
Query: 383 GSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS 442
+ D+ +GA + + H V ++V + +
Sbjct: 302 QNLDKKASSEGSAAAGA----GLDSLHKNSVSQISVLSGGK---------AKCSQFCTTG 348
Query: 443 LDKSVKVWRVSEHAPDLKGL 462
+D + +W V LK L
Sbjct: 349 MDGGMSIWDVRSLESALKDL 368
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 54.1 bits (128), Expect = 1e-08
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD--CKCLESINAHDDAINSVVAGFDS-L 290
+ +SC + N ++ + + + ++ S + + H+ + V DS
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65
Query: 291 VFTGSADGTVKVW 303
+ T D VW
Sbjct: 66 IVTCGTDRNAYVW 78
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.7 bits (145), Expect = 6e-11
Identities = 38/281 (13%), Positives = 76/281 (27%), Gaps = 15/281 (5%)
Query: 123 EGH---IYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTG 179
GH I +L + L +GS I W + S + +S L+ ++ S
Sbjct: 10 SGHNKGITALTVNP--LISGSYDGRIMEWSSS---SMHQDHSNLIVSLDNSKAQEYSSIS 64
Query: 180 HQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239
D + S K + V ++ + ++ + +R S
Sbjct: 65 WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS 124
Query: 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSL------VFT 293
+SL+ + + + + + V
Sbjct: 125 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMG 184
Query: 294 GSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWEC 353
++ + + + A E +V GS D + +
Sbjct: 185 KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV 244
Query: 354 EKHLSHGGVLRGHKMAVLCLA-AAGNLVFSGSADRNICLWR 393
++ + L HK V L + + S AD I W
Sbjct: 245 KRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.0 bits (99), Expect = 4e-05
Identities = 18/175 (10%), Positives = 44/175 (25%), Gaps = 14/175 (8%)
Query: 268 KCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAV 327
+ L++I+ H+ I ++ + L+ +GS DG + W + H N +
Sbjct: 4 EVLKTISGHNKGITALT--VNPLI-SGSYDGRIMEWSSSSMHQD-----------HSNLI 49
Query: 328 TALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADR 387
+L ++ D L + + +
Sbjct: 50 VSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSF 109
Query: 388 NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS 442
+ + + L+ + V + + T
Sbjct: 110 TGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAK 164
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.7 bits (93), Expect = 2e-04
Identities = 40/253 (15%), Positives = 70/253 (27%), Gaps = 32/253 (12%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFT 293
H ++ L++N L SGS+D + W S H + I S+ +
Sbjct: 12 HNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDNSKAQEYSS 62
Query: 294 GSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTA----------------LAVNQESA 337
S D T+KV G++ +A AV +V S
Sbjct: 63 ISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSP 122
Query: 338 VVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREES 397
S V E + L +++ S + +
Sbjct: 123 GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV 182
Query: 398 GAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQR-------WTVYSGSLDKSVKVW 450
L L A + + + V +GSLD ++ ++
Sbjct: 183 MGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIY 242
Query: 451 RVSEHAPDLKGLH 463
V +K L+
Sbjct: 243 SVKRPMKIIKALN 255
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.6 bits (85), Expect = 0.002
Identities = 18/124 (14%), Positives = 35/124 (28%), Gaps = 4/124 (3%)
Query: 70 TPTSGEASPYLMSPWNNQPVSPYTKSPWIMPPYSPNENLLSSCNGLIGSIVRKEGHIYSL 129
P+ SP + + + S E
Sbjct: 164 KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE 223
Query: 130 AASGDLLYTGSDSKNIRVW---KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIR 186
DL+ TGS NI ++ + +K ++ V ++ + + + D I+
Sbjct: 224 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGADACIK 282
Query: 187 IWKV 190
W V
Sbjct: 283 RWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.9 bits (83), Expect = 0.004
Identities = 17/99 (17%), Positives = 25/99 (25%), Gaps = 32/99 (32%)
Query: 166 AIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRR 225
A + + + TG D I I+ V R +
Sbjct: 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA----------------------- 256
Query: 226 NRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264
H D V+ L L S D +K W +
Sbjct: 257 --------HKDGVNNLLWETP-STLVSSGADACIKRWNV 286
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.2 bits (144), Expect = 2e-10
Identities = 48/351 (13%), Positives = 94/351 (26%), Gaps = 50/351 (14%)
Query: 120 VRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTG 179
V +G + + D L ++ R L ++ +V A+ IS + ++TG
Sbjct: 17 VTADGQMQPVPFPPDALIGPGIPRHARQINTL-------NHGEVVCAVTISNPTRHVYTG 69
Query: 180 HQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKS------------------SVNPKNYV 221
G +++W +S +Y++S
Sbjct: 70 G-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA 128
Query: 222 EVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAIN 281
R ++ L + + S + + D A
Sbjct: 129 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 188
Query: 282 SVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC 341
++ + ++TG D TV+ W + + + +L +
Sbjct: 189 IDISNDGTKLWTGGLDNTVRSWDL-------REGRQLQQHDFTSQIFSLGYCPTGEWLAV 241
Query: 342 GSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHS 401
G V K + L + L A G S D + WR
Sbjct: 242 GMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY----G 297
Query: 402 CLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452
+ + V + D + + +GS DK V+ V
Sbjct: 298 ASIFQSKESSSVLSCDISVDDKY-------------IVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (98), Expect = 6e-05
Identities = 35/275 (12%), Positives = 67/275 (24%), Gaps = 42/275 (15%)
Query: 224 RRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI-----NAHDD 278
R R + + H + V ++++ +Y+G +KVW IS + D+
Sbjct: 40 RHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDN 98
Query: 279 AINSVVAGFD-SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESA 337
I S D + G T+ +W K L
Sbjct: 99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI---SPDSKV 155
Query: 338 VVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREES 397
C S + + + L + + ++ G +++G D + W
Sbjct: 156 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR-- 213
Query: 398 GAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRW--------------------- 436
T + L + + +
Sbjct: 214 --EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSL 271
Query: 437 -------TVYSGSLDKSVKVWRVSEHAPDLKGLHS 464
S D + WR A + S
Sbjct: 272 KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES 306
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.9 bits (130), Expect = 7e-09
Identities = 38/230 (16%), Positives = 82/230 (35%), Gaps = 12/230 (5%)
Query: 227 RSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAG 286
R+ L+ ++CL + +G+ DK ++V+ + K L ++ HD + ++
Sbjct: 5 RTTLRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA 62
Query: 287 FDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG 346
++ +GS D TV+VW + + + + GS D
Sbjct: 63 HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHN----STVRCLDIVEYKNIKYIVTGSRDN 118
Query: 347 LVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLA-- 404
++ W+ K S H ++ N F G ++ R + ++
Sbjct: 119 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS 178
Query: 405 ----VLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVW 450
++ +KCL + +R S S+D ++++W
Sbjct: 179 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 228
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.3 bits (118), Expect = 3e-07
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES-INAHDDAINSVVAGFDSLVF 292
H+ +S ++ + + ++ + K + + I D I SV +LV
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVA 339
Query: 293 TGSADGTVKVW 303
DG +
Sbjct: 340 AVEKDGQSFLE 350
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.7 bits (114), Expect = 8e-07
Identities = 58/378 (15%), Positives = 115/378 (30%), Gaps = 86/378 (22%)
Query: 123 EGH----IYSLAASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDS--- 173
GH I L + + TG+D K IRV+ N K + G V A+ +
Sbjct: 9 RGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILV 68
Query: 174 ----------------------------------------NKIFTGHQDGKIRIWKVSRK 193
I TG +D + +WK+ ++
Sbjct: 69 SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 128
Query: 194 NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG 253
+ + D+ + P + N + + S +++ ++ SG
Sbjct: 129 S-----------SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSG 177
Query: 254 SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSL-VFTGSADGTVKVWRRELQGKGT 312
S+D TL VW ++ KCL ++ H D I S + + + S D T+++W E
Sbjct: 178 SYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY 237
Query: 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLC 372
L+ + ++DG + W+ + + A+
Sbjct: 238 TLQGHTALVGLLR--------LSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITT 289
Query: 373 LAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKG 432
+ N++ SGS + ++ A + + + +
Sbjct: 290 FYVSDNILVSGS-ENQFNIYNLRS--GKLVHANILKDADQIWSVNFKGKT---------- 336
Query: 433 DQRWTVYSGSLDKSVKVW 450
V + D +
Sbjct: 337 ----LVAAVEKDGQSFLE 350
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.9 bits (125), Expect = 4e-08
Identities = 28/314 (8%), Positives = 74/314 (23%), Gaps = 42/314 (13%)
Query: 123 EGH---IYSLAAS--GDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIISGD 172
+ I + LL S ++ V+ + + +
Sbjct: 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67
Query: 173 SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKI 232
++ + + S + + + + I
Sbjct: 68 TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVI 127
Query: 233 RHYDAVSCLSLNAEQGLLYSGSW------------------DKTLKVWRISDCKCLESIN 274
+ + + + ++ +R+ C+
Sbjct: 128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTI 187
Query: 275 AHDDAINSVVAGFDS-----LVFTGSADGTVKVWRRELQG---------KGTKHCLAQVL 320
+ S DG V V + QG H L
Sbjct: 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247
Query: 321 LKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLV 380
V ++ + +Y SDG+++ W + + ++ +V+ +A + N++
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNIL 307
Query: 381 FSGSADRNICLWRR 394
++D
Sbjct: 308 CLATSDDTFKTNAA 321
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.5 bits (111), Expect = 2e-06
Identities = 13/91 (14%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 268 KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENA 326
+ ++ A D I+ + L+ S DG++ V++ + K+ L++++
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFD---IQAKNVDLLQSLRYKHP 58
Query: 327 VTALAVNQES-AVVYCGSSDGLVNFWECEKH 356
+ + +Y G+ G + +
Sbjct: 59 LLCCNFIDNTDLQIYVGTVQGEILKVDLIGS 89
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 3e-06
Identities = 15/139 (10%), Positives = 38/139 (27%), Gaps = 17/139 (12%)
Query: 170 SGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSV 229
+ DG++ + + + N
Sbjct: 203 PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTN------------- 249
Query: 230 LKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS 289
V+ + + LY+ D + W + K +++ ++ +A D+
Sbjct: 250 ----LAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDN 305
Query: 290 LVFTGSADGTVKVWRRELQ 308
++ ++D T K Q
Sbjct: 306 ILCLATSDDTFKTNAAIDQ 324
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.4 bits (108), Expect = 4e-06
Identities = 23/245 (9%), Positives = 57/245 (23%), Gaps = 19/245 (7%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC---LESINAHDDAINSVVAGFDS- 289
D +S + + + LL SWD +L V++ L + + ++
Sbjct: 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD 69
Query: 290 -LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLV 348
++ G+ G + + L +A
Sbjct: 70 LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDP 129
Query: 349 NFWECEKHL--SHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVL 406
+ + K + + + + G + + +R L
Sbjct: 130 RNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFR------------L 177
Query: 407 TGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGLHSPT 466
+ + + ++ S+D V V + D
Sbjct: 178 PLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237
Query: 467 QMRRQ 471
+
Sbjct: 238 FRCHR 242
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.8 bits (91), Expect = 4e-04
Identities = 11/92 (11%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Query: 316 LAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLR--GHKMAVLCL 373
+ Q+ ++ ++ + + +++ S DG + ++ + + +L+ +K +LC
Sbjct: 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62
Query: 374 A---AAGNLVFSGSADRNICLWRREESGAHSC 402
++ G+ I S +
Sbjct: 63 NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQA 94
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.1 bits (84), Expect = 0.003
Identities = 26/295 (8%), Positives = 78/295 (26%), Gaps = 38/295 (12%)
Query: 164 VKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEV 223
+ I I + + DG + ++K + +V
Sbjct: 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQ---------------------- 51
Query: 224 RRNRSVLKIRHYDAVSCLSLNAEQG-LLYSGSWDKTLKVWRISDCKCLESINAHDDAINS 282
+R+ + C + +Y G+ + + +++ ++ +
Sbjct: 52 -------SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGI 104
Query: 283 VVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENA--VTALAVNQESAVVY 340
+A + + + G + L + ++ S+ +
Sbjct: 105 CRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLI 164
Query: 341 CGSSDGLVNFW-----ECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRRE 395
G ++ V ++ E + L+ V L S D + + +
Sbjct: 165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD 224
Query: 396 ESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVW 450
+ G + + + + + + + +Y+ D + W
Sbjct: 225 DQGDDYNSSKRF-AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 52.2 bits (123), Expect = 4e-08
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV--VAGFDSLV 291
H +V L+ + + + S S DKT+K+W ++ K ++I + + +
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 296
Query: 292 FTGSADGTVKVWRRE 306
+ SA+G + E
Sbjct: 297 VSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 50.3 bits (118), Expect = 2e-07
Identities = 35/299 (11%), Positives = 71/299 (23%), Gaps = 28/299 (9%)
Query: 122 KEGHIYSLAASGD---LLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFT 178
G L + + Y S +L + + +S S +
Sbjct: 16 ARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCAS 75
Query: 179 GHQDGKIRIWKVSRKNASVHKRVGS-----------------LPTFKDYVKSSVNPKNYV 221
G G +RIW ++ + + + +
Sbjct: 76 GDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT 135
Query: 222 EVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAIN 281
+ R ++V + + S + K +
Sbjct: 136 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSV 195
Query: 282 SVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC 341
TG V + G + + H +V L + + +
Sbjct: 196 RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS 255
Query: 342 GSSDGLVNFW-----ECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRRE 395
S+D + W + EK + G + L + + S SA+ I E
Sbjct: 256 ASADKTIKIWNVATLKVEKTIPVGT---RIEDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.5 bits (121), Expect = 9e-08
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 249 LLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGF----DSLVFTGSADGTVKVW 303
+ D T++VW ++ KC++ + + G + + + S DGT+ +
Sbjct: 265 KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.8 bits (114), Expect = 7e-07
Identities = 39/346 (11%), Positives = 80/346 (23%), Gaps = 55/346 (15%)
Query: 124 GHIYSLAASGD---LLYTGSDSKNIRVWKN-------LKEFSGFKSNSGLVKAIIISGDS 173
L+ + Y S +R + + +F+G S+ S
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 174 NKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233
+ +G + GK+ +W + S V F+
Sbjct: 78 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQV------------------------ 113
Query: 234 HYDAVSCLSLNAE--QGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLV 291
+S +S + E + + D L ++ H IN+ +
Sbjct: 114 LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPM 173
Query: 292 FTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE-----SAVVYCGSSDG 346
+ + V + K + V + + + V
Sbjct: 174 RSMTVGDDGSVVFYQGPPFKFSASDRTHH-KQGSFVRDVEFSPDSGEFVITVGSDRKISC 232
Query: 347 LVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVL 406
+ AD I +W S C+
Sbjct: 233 FDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS---KCVQKW 289
Query: 407 TGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452
T + V + + S SLD ++ + +
Sbjct: 290 TLDKQQLGNQQVGVVATGNG----------RIISLSLDGTLNFYEL 325
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 51.4 bits (121), Expect = 9e-08
Identities = 30/350 (8%), Positives = 66/350 (18%), Gaps = 51/350 (14%)
Query: 133 GDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSR 192
GDL+ S + + + ++ + GD+ F +
Sbjct: 15 GDLIAFVSRGQ-AFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDY 73
Query: 193 KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC------------ 240
+ K +L V R + +
Sbjct: 74 RTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF 133
Query: 241 ---------LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLV 291
+ G + + V+ + K + + +
Sbjct: 134 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNL 193
Query: 292 FTGSADGTVKVW-RRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350
+ S R L V+ + + S G D +
Sbjct: 194 YYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMY 253
Query: 351 WECEKHLSHGG------VLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHSC 402
G L + + + +
Sbjct: 254 KRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT------ 307
Query: 403 LAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452
+T + L + DR TV D + + +
Sbjct: 308 -RKVTEVKNNLTDLRLSADRK-------------TVMVRKDDGKIYTFPL 343
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 51.0 bits (120), Expect = 1e-07
Identities = 29/359 (8%), Positives = 81/359 (22%), Gaps = 17/359 (4%)
Query: 56 SSTSPRYNNNSGTRTPTSGEASPYLMSPWNNQPVSPYTKSPWIMPPYSPNENLLSSCNGL 115
S + ++ G ++ + + +
Sbjct: 4 SKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTR 63
Query: 116 IGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNK 175
G + IY +G + N+ + + + + + ++ K
Sbjct: 64 EGDFLG----IYDYR-TGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK 118
Query: 176 IFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY 235
+ + I + + S G + + + ++ +
Sbjct: 119 PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTEN 178
Query: 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRIS-------DCKCLESINAHDDAINSVVAGFD 288
+ +A+ LY S+ I + N
Sbjct: 179 SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPR 238
Query: 289 -SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLK-HENAVTALAVNQESAVVYCGSSDG 346
G D R + L+ + + +A G
Sbjct: 239 SMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKG 298
Query: 347 LVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAV 405
++ ++ + ++ + + L+A V D I + E+ +
Sbjct: 299 VLLKYDVKTRKVTE--VKNNLTDL-RLSADRKTVMVRKDDGKIYTFPLEKPEDERTVET 354
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 50.4 bits (118), Expect = 2e-07
Identities = 36/252 (14%), Positives = 67/252 (26%), Gaps = 26/252 (10%)
Query: 228 SVLKIR--HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI-NAHDDAINSVV 284
S+ ++R H A++ LS +A+ L+S + + W IS + H I +
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62
Query: 285 AGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS 344
+FT S D +KV G + +A L + A +
Sbjct: 63 TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122
Query: 345 DGLVNFWECEKHLSHGG-----------------------VLRGHKMAVLCLAAAGNLVF 381
+ E +S+
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182
Query: 382 SGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG 441
+ A N + + + + + + +G
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 242
Query: 442 SLDKSVKVWRVS 453
SLD SV VW ++
Sbjct: 243 SLDNSVIVWNMN 254
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.6 bits (116), Expect = 4e-07
Identities = 32/306 (10%), Positives = 75/306 (24%), Gaps = 32/306 (10%)
Query: 161 SGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNY 220
+ + A+ S D +F+ +G I W +S P + + + +
Sbjct: 12 NKAITALSSSADGKTLFSADAEGHINSWDISTG-----ISNRVFPDVHATMITGIKTTSK 66
Query: 221 VEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES-------- 272
++ ++ A +++ S L V D
Sbjct: 67 GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 126
Query: 273 -----INAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAV 327
+ V D + + ++ + +
Sbjct: 127 HGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVA 186
Query: 328 TALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADR 387
+ A E ++ K+A + + + +GS D
Sbjct: 187 FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN 246
Query: 388 NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSV 447
++ +W + H + V + + T+ S D ++
Sbjct: 247 SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET--------------TIVSAGQDSNI 292
Query: 448 KVWRVS 453
K W V
Sbjct: 293 KFWNVP 298
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 48.3 bits (113), Expect = 1e-06
Identities = 24/330 (7%), Positives = 72/330 (21%), Gaps = 38/330 (11%)
Query: 134 DLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIISGDSNKIF-TGHQDGKIRI 187
D + + + V K + + +++ + T ++ +
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPT-PMVPMVAPGGRIAYATVNKSESLVK 60
Query: 188 WKVSRKNASVHKRVGSLPTFKDYVKS-SVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE 246
+ + + + +++P V + +
Sbjct: 61 IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF-------EVQ 113
Query: 247 QGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRE 306
+ + + + + + D G D V A V+ +
Sbjct: 114 PTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQ 173
Query: 307 LQGKG------TKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHG 360
Q A ++ + + + E
Sbjct: 174 SWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM 233
Query: 361 GVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEE 420
+R + A + A + + E+ ++ + + + V
Sbjct: 234 REVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEK---NASIKRV-PLPHSYYSVNVST 289
Query: 421 DRDHDHEYHQKGDQRWTVYSGSLDKSVKVW 450
D TV+ G + +
Sbjct: 290 DGS-------------TVWLGGALGDLAAY 306
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.9 bits (94), Expect = 2e-04
Identities = 10/140 (7%), Positives = 38/140 (27%), Gaps = 8/140 (5%)
Query: 155 SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIW-----KVSRKNASVHKRVGSLPTFKD 209
S D + + +++ + +
Sbjct: 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP 250
Query: 210 YVKSSVNPKNYVEV---RRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD 266
+ N +E +N S+ ++ + ++++ + ++ G L +
Sbjct: 251 AKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310
Query: 267 CKCLESINAHDDAINSVVAG 286
+ ++ +A S+ +
Sbjct: 311 LEKKGQVDLPGNASMSLASV 330
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.7 bits (104), Expect = 1e-05
Identities = 23/252 (9%), Positives = 60/252 (23%), Gaps = 24/252 (9%)
Query: 241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN-AHDDAINSVVAGFDS--LVFTGSAD 297
+L A + ++ L V ++ +S + + D+ +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 298 GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHL 357
G + + L+ V + ++ + A++ + VY +
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121
Query: 358 SHGGVLRGHKM---------------AVLCLAAAGNLVFSGSADRNICLWRREESGAHSC 402
V ++ A G+L +G + + + + A
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181
Query: 403 LAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWT------VYSGSLDKSVKVWRVSEHA 456
L + HE+ + L +
Sbjct: 182 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK 241
Query: 457 PDLKGLHSPTQM 468
+ T++
Sbjct: 242 THTQEFADLTEL 253
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 41.6 bits (96), Expect = 1e-04
Identities = 26/350 (7%), Positives = 77/350 (22%), Gaps = 55/350 (15%)
Query: 128 SLAASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGL-VKAIIISGDSNKIF-TGHQDG 183
+L A + + + N+ V + + +++ D+ + + G
Sbjct: 3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG 62
Query: 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL 243
I + K + + ++ + V
Sbjct: 63 DIYGI-----DLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY---------ATVN 108
Query: 244 NAEQGLLYSGSWDKTLKVWRISDCKCLESINAHD--DAINSVVAGFDSLVF--------- 292
++ + L+V+ +D + + + + A D ++
Sbjct: 109 PTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKM 168
Query: 293 ---TGSADGTVKVWRRELQGKGTKHCLAQVLL-----KHENAVTALAVNQESAVVYCGSS 344
TG + + +G L + T +
Sbjct: 169 DVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 228
Query: 345 DGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGS-ADRNICLWRREESGAHSCL 403
+ + +H + + + ++ +
Sbjct: 229 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQ---RKLI 285
Query: 404 AVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453
C+A ++ D +Y G + V+
Sbjct: 286 KAA-NLDHTYYCVAFDKKGD-------------KLYLGGTFNDLAVFNPD 321
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.3 bits (95), Expect = 1e-04
Identities = 24/249 (9%), Positives = 58/249 (23%), Gaps = 19/249 (7%)
Query: 61 RYNNNSGTRTPTSGEASPYLMSPWNNQPVSP-YTKSPWIMPPYSPNENLLSSCNGLIGSI 119
R ++P + ++ +P + + +
Sbjct: 93 DIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH 152
Query: 120 VRKEGHIYSLAASGD--LLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIF 177
+ D L ++ + + + L+ S + ++
Sbjct: 153 IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE--VFHPEDEFLINHPAYSQKAGRLV 210
Query: 178 TGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA 237
GKI +S +A V +L + V R + +
Sbjct: 211 WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQR 270
Query: 238 VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS---LVFTG 294
+ + + V + L I+S+ D L
Sbjct: 271 ----------DEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALS 319
Query: 295 SADGTVKVW 303
+ D T+ +
Sbjct: 320 TGDKTLYIH 328
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 473 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.98 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.97 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.96 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.93 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.91 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.91 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.91 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.89 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.87 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.87 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.85 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.81 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.8 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.78 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.76 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.72 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.71 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.67 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.65 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.63 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.6 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.43 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.42 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.41 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.25 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.17 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.16 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.14 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.12 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.09 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.07 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.04 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.96 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.95 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.87 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.85 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.84 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.72 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.72 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.53 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.52 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.51 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.47 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.45 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.3 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.04 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.04 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.35 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.15 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.0 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.8 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.44 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 96.37 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 96.13 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.12 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.11 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 95.91 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 95.82 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 95.69 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.59 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 95.21 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 95.07 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.84 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 94.8 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 94.44 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.43 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 93.19 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 92.52 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 92.5 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 91.77 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 91.5 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 91.39 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 90.15 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 88.63 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 88.12 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 85.76 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 85.74 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 83.09 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 81.21 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 80.67 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.4e-41 Score=315.11 Aligned_cols=281 Identities=17% Similarity=0.280 Sum_probs=235.5
Q ss_pred cceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCCcc-------ccccccCcccEEEEEEeCCCCEEEEEeCCCe
Q 012007 114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE-------FSGFKSNSGLVKAIIISGDSNKIFTGHQDGK 184 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~~-------~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~ 184 (473)
..+.++ +|...|.+++++ |++||+|+ ||.|+|||+... .....+|.+.|.+++|+|++++|++|+.||.
T Consensus 43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~ 120 (337)
T d1gxra_ 43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120 (337)
T ss_dssp EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred eEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccc
Confidence 334455 799999888765 88999998 799999996522 1134578999999999999999999999999
Q ss_pred EEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEc
Q 012007 185 IRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264 (473)
Q Consensus 185 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~ 264 (473)
|++||+........... ..|...+.+++|+|++.++++++.|+.|++|++
T Consensus 121 i~iwd~~~~~~~~~~~~------------------------------~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~ 170 (337)
T d1gxra_ 121 LSIWDLAAPTPRIKAEL------------------------------TSSAPACYALAISPDSKVCFSCCSDGNIAVWDL 170 (337)
T ss_dssp EEEEECCCC--EEEEEE------------------------------ECSSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ccccccccccccccccc------------------------------ccccccccccccccccccccccccccccccccc
Confidence 99999876543322221 138889999999999999999999999999999
Q ss_pred CCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC
Q 012007 265 SDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS 343 (473)
Q Consensus 265 ~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 343 (473)
.++++......|...|.++++++++ .+++++.|+.|++||++... . .....|...|.+++|+|++++|++++
T Consensus 171 ~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~-----~--~~~~~~~~~i~~l~~~~~~~~l~~~~ 243 (337)
T d1gxra_ 171 HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR-----Q--LQQHDFTSQIFSLGYCPTGEWLAVGM 243 (337)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----E--EEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccce-----e--ecccccccceEEEEEcccccccceec
Confidence 9999999999999999999999887 89999999999999997432 1 22345788999999999999999999
Q ss_pred CCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecC
Q 012007 344 SDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEED 421 (473)
Q Consensus 344 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 421 (473)
.|+.|++||++..... ....|...+.++. +++++|++|+.||.|++||+.+ .+.+..+ .|...|++++|+|+
T Consensus 244 ~d~~i~i~d~~~~~~~--~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~---~~~~~~~-~~~~~v~~~~~s~d 317 (337)
T d1gxra_ 244 ESSNVEVLHVNKPDKY--QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY---GASIFQS-KESSSVLSCDISVD 317 (337)
T ss_dssp TTSCEEEEETTSSCEE--EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT---CCEEEEE-ECSSCEEEEEECTT
T ss_pred cccccccccccccccc--cccccccccceEEECCCCCEEEEEeCCCeEEEEECCC---CCEEEEc-cCCCCEEEEEEeCC
Confidence 9999999999876543 4567787887665 5689999999999999999988 3455554 47889999999999
Q ss_pred CCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 422 RDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
++ +|++|+.||+|+|||+
T Consensus 318 ~~-------------~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 318 DK-------------YIVTGSGDKKATVYEV 335 (337)
T ss_dssp SC-------------EEEEEETTSCEEEEEE
T ss_pred CC-------------EEEEEeCCCeEEEEEE
Confidence 98 8999999999999997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.9e-39 Score=298.44 Aligned_cols=281 Identities=22% Similarity=0.382 Sum_probs=246.2
Q ss_pred eeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q 012007 116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVS 191 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~ 191 (473)
..+|.||.+.|++++++ +++||||+.||+|+|||+. +.+..+.+|.+.|.+++|++++.+++++..++.+.+|+..
T Consensus 10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (317)
T d1vyhc1 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 89 (317)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccc
Confidence 45789999999998864 8899999999999999965 5677889999999999999999999999999999999987
Q ss_pred CCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeE
Q 012007 192 RKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE 271 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~ 271 (473)
......... +|...+.++.|+++++.+++++.|+.+++||+++++.+.
T Consensus 90 ~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 137 (317)
T d1vyhc1 90 GFECIRTMH--------------------------------GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK 137 (317)
T ss_dssp SSCEEECCC--------------------------------CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred ccccccccc--------------------------------cccccceeeeccCCCceEEeeccCcceeEeecccceeee
Confidence 765432221 388899999999999999999999999999999999999
Q ss_pred EeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCC--------------
Q 012007 272 SINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES-------------- 336 (473)
Q Consensus 272 ~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-------------- 336 (473)
.+..|...+.++++++++ +|++++.|+.|++|+.... .....+..|...+.+++++|++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 211 (317)
T d1vyhc1 138 TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK------ECKAELREHRHVVECISWAPESSYSSISEATGSETK 211 (317)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC--
T ss_pred EEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccc------eeeEEEecCCCCceEEEEeeccccceeeccccceee
Confidence 999999999999999987 8999999999999998632 2345667788889999887653
Q ss_pred ------CEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecC
Q 012007 337 ------AVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVLTG 408 (473)
Q Consensus 337 ------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 408 (473)
.++++++.|+.|++||++++.. ...+.+|...+.++. +++++|++|+.||.|++||+.+ .+++..+.+
T Consensus 212 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~ 287 (317)
T d1vyhc1 212 KSGKPGPFLLSGSRDKTIKMWDVSTGMC-LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN---KRCMKTLNA 287 (317)
T ss_dssp -----CCEEEEEETTSEEEEEETTTTEE-EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT---SCCCEEEEC
T ss_pred eeccCCceeEeccCCCEEEEEECCCCcE-EEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCC---CcEEEEEcC
Confidence 4789999999999999988654 356778888887665 5689999999999999999988 567888899
Q ss_pred CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 409 HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 409 h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
|.+.|++++|+|+++ +|++|+.||+|+|||
T Consensus 288 h~~~V~~~~~s~~~~-------------~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 288 HEHFVTSLDFHKTAP-------------YVVTGSVDQTVKVWE 317 (317)
T ss_dssp CSSCEEEEEECSSSS-------------CEEEEETTSEEEEEC
T ss_pred CCCCEEEEEEcCCCC-------------EEEEEeCCCeEEEeC
Confidence 999999999999998 899999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.1e-39 Score=304.36 Aligned_cols=294 Identities=23% Similarity=0.391 Sum_probs=226.7
Q ss_pred eeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCCcc--cc------------------ccccCcccEEEEEEeCCCCE
Q 012007 118 SIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE--FS------------------GFKSNSGLVKAIIISGDSNK 175 (473)
Q Consensus 118 ~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~~~--~~------------------~~~~h~~~V~~l~~s~~~~~ 175 (473)
...+|.+.|+|++++ |++||+|+ |++|+|||+... +. ....|...|.+++|+|++++
T Consensus 57 ~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~ 135 (388)
T d1erja_ 57 KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 135 (388)
T ss_dssp EEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred eeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCc
Confidence 334799999998874 88999987 899999986421 11 12357788999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC
Q 012007 176 IFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW 255 (473)
Q Consensus 176 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~ 255 (473)
|++|+.||.|++||...++...... +|...|.++.+++++..+++++.
T Consensus 136 l~s~~~dg~v~i~~~~~~~~~~~~~--------------------------------~h~~~v~~~~~~~~~~~~~~~~~ 183 (388)
T d1erja_ 136 LATGAEDRLIRIWDIENRKIVMILQ--------------------------------GHEQDIYSLDYFPSGDKLVSGSG 183 (388)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEEC--------------------------------CCSSCEEEEEECTTSSEEEEEET
T ss_pred ceecccccccccccccccccccccc--------------------------------ccccccccccccccccccccccc
Confidence 9999999999999998776443322 48999999999999999999999
Q ss_pred CCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcc-eeeeeeeccCCccEEEEEEc
Q 012007 256 DKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTK-HCLAQVLLKHENAVTALAVN 333 (473)
Q Consensus 256 dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~ 333 (473)
++.|++||+.+.........+...+....+.+++ +|++++.||.|++||.+....... ........+|...|++++|+
T Consensus 184 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 263 (388)
T d1erja_ 184 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT 263 (388)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC
T ss_pred ceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEEC
Confidence 9999999999998888877666655554445455 899999999999999875432111 11122345688999999999
Q ss_pred cCCCEEEEeCCCCcEEEEecCCcccc-----------cceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCCce
Q 012007 334 QESAVVYCGSSDGLVNFWECEKHLSH-----------GGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESGAH 400 (473)
Q Consensus 334 ~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~ 400 (473)
|++++|++++.||.|++||+++.... ......|...+.+++ +++++|++|+.||.|++||+.+ .
T Consensus 264 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~---~ 340 (388)
T d1erja_ 264 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS---G 340 (388)
T ss_dssp TTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT---C
T ss_pred CCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCC---C
Confidence 99999999999999999998753321 123446777776665 4699999999999999999998 5
Q ss_pred eEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 401 SCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 401 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
+++..+.+|.+.|+++++.+... ......+|+||+.||+|+||++++
T Consensus 341 ~~~~~l~~H~~~V~~~~~~~~~~-------~spd~~~l~s~s~Dg~I~iW~~~k 387 (388)
T d1erja_ 341 NPLLMLQGHRNSVISVAVANGSS-------LGPEYNVFATGSGDCKARIWKYKK 387 (388)
T ss_dssp CEEEEEECCSSCEEEEEECSSCT-------TCTTCEEEEEEETTSEEEEEEEEE
T ss_pred cEEEEEeCCCCCEEEEEEecCcc-------cCCCCCEEEEEeCCCEEEEEeeee
Confidence 78889999999999998754322 111111899999999999999853
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.5e-38 Score=293.33 Aligned_cols=275 Identities=15% Similarity=0.168 Sum_probs=226.4
Q ss_pred EEEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecc
Q 012007 126 IYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGS 203 (473)
Q Consensus 126 V~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 203 (473)
+.+++++|+.||.+. ++.|.+||+. .....+.+|.+.|++++|+|+|++|++|+.||.|++||+............
T Consensus 22 ~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~- 99 (311)
T d1nr0a1 22 VLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP- 99 (311)
T ss_dssp CCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE-
T ss_pred EEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccc-
Confidence 346778899998886 5679999875 456678899999999999999999999999999999999887654332221
Q ss_pred ccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC--CCCEEEEEcCCCeeeEEeecCCCcee
Q 012007 204 LPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW--DKTLKVWRISDCKCLESINAHDDAIN 281 (473)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~--dg~v~vwd~~~~~~~~~~~~~~~~v~ 281 (473)
.|...|.+++|+|++++|++++. +..+++|++.+++.+..+.+|...|.
T Consensus 100 -----------------------------~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~ 150 (311)
T d1nr0a1 100 -----------------------------VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMN 150 (311)
T ss_dssp -----------------------------CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEE
T ss_pred -----------------------------cccCccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 38899999999999999999986 45699999999999999999999999
Q ss_pred EEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccc
Q 012007 282 SVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSH 359 (473)
Q Consensus 282 ~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 359 (473)
+++|+|++ .+++|+.||.|++||++. .........|...|++++|+|++++|++++.|+.|++||+......
T Consensus 151 ~v~~~~~~~~~l~sgs~d~~i~i~d~~~------~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~ 224 (311)
T d1nr0a1 151 SVDFKPSRPFRIISGSDDNTVAIFEGPP------FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT 224 (311)
T ss_dssp EEEECSSSSCEEEEEETTSCEEEEETTT------BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred cccccccceeeecccccccccccccccc------cccccccccccccccccccCcccccccccccccccccccccccccc
Confidence 99999987 688999999999999963 3345667789999999999999999999999999999998764332
Q ss_pred c------ceeecCcceEEEEEe--cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCC-ceeEEEEecCCCCCccccc
Q 012007 360 G------GVLRGHKMAVLCLAA--AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTG-PVKCLAVEEDRDHDHEYHQ 430 (473)
Q Consensus 360 ~------~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-~V~~l~~~~~~~~~~~~~~ 430 (473)
. ....+|...|.++++ ++++|++|+.||.|+|||+++ .+++..+..|.. ....+.+.+++.
T Consensus 225 ~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t---~~~~~~l~~~~~~~~~~~~~~~~~~------- 294 (311)
T d1nr0a1 225 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT---LKVEKTIPVGTRIEDQQLGIIWTKQ------- 294 (311)
T ss_dssp EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT---TEEEEEEECCSSGGGCEEEEEECSS-------
T ss_pred ccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCC---CcEEEEEECCCCccceEEEEEecCC-------
Confidence 1 233468888877765 689999999999999999988 567777776644 233344444444
Q ss_pred CCCccEEEEEeeCCCcEEEEEcC
Q 012007 431 KGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 431 ~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
.|++++.||.|++||++
T Consensus 295 ------~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 295 ------ALVSISANGFINFVNPE 311 (311)
T ss_dssp ------CEEEEETTCCEEEEETT
T ss_pred ------EEEEEECCCEEEEEeCC
Confidence 68999999999999974
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.3e-37 Score=287.03 Aligned_cols=286 Identities=20% Similarity=0.336 Sum_probs=236.4
Q ss_pred ceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
..++|.||.+.|++++++ +++||+|+.||+|+|||.. +.+..+..|...|.+++|+|++++|++|+.|+.+++|+.
T Consensus 47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~ 126 (340)
T d1tbga_ 47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEES
T ss_pred eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccc
Confidence 467899999999999875 8899999999999999965 556778889999999999999999999999999999998
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeee
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL 270 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~ 270 (473)
........... ...+|.......... .+..++....|.....++.......
T Consensus 127 ~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (340)
T d1tbga_ 127 KTREGNVRVSR----------------------------ELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQT 177 (340)
T ss_dssp SSSCSCCCEEE----------------------------EECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEE
T ss_pred cccccccccce----------------------------ecccccccccccccc-ccccccccccccccccccccccccc
Confidence 76543221110 111255555554444 4567888888999999999988888
Q ss_pred EEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEE
Q 012007 271 ESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVN 349 (473)
Q Consensus 271 ~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~ 349 (473)
.....+...+....+.+.+ ++++++.|+.|++||++. ......+.+|...|++++|+|++++|++++.||.|+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~------~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~ 251 (340)
T d1tbga_ 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE------GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251 (340)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT------TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ccccccceeEeeeccccccceeEEeecCceEEEEECCC------CcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEE
Confidence 8888888889999888776 889999999999999863 234566778999999999999999999999999999
Q ss_pred EEecCCcccccce-eecCcceEEEE--EecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCc
Q 012007 350 FWECEKHLSHGGV-LRGHKMAVLCL--AAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDH 426 (473)
Q Consensus 350 iwd~~~~~~~~~~-~~~~~~~v~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~ 426 (473)
+||++........ ...+...+.++ ++++++|++|+.||.|++||+.+ .+++..+.+|.++|++++|+|++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~---~~~~~~~~~H~~~V~~l~~s~d~~--- 325 (340)
T d1tbga_ 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK---ADRAGVLAGHDNRVSCLGVTDDGM--- 325 (340)
T ss_dssp EEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTT---CCEEEEECCCSSCEEEEEECTTSS---
T ss_pred EEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCC---CcEEEEEcCCCCCEEEEEEeCCCC---
Confidence 9999875443222 23444555554 56799999999999999999988 678899999999999999999998
Q ss_pred ccccCCCccEEEEEeeCCCcEEEEE
Q 012007 427 EYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 427 ~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
+|+||+.||.|+|||
T Consensus 326 ----------~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 326 ----------AVATGSWDSFLKIWN 340 (340)
T ss_dssp ----------CEEEEETTSCEEEEC
T ss_pred ----------EEEEEccCCEEEEeC
Confidence 899999999999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.2e-36 Score=278.90 Aligned_cols=287 Identities=16% Similarity=0.235 Sum_probs=221.1
Q ss_pred ccceeeeeeecccEEEEEec--CCEEEEeeCCCcEEEeeCC--cccccc-ccCcccEEEEEEeCCCCEEEEEeCCCeEEE
Q 012007 113 NGLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGF-KSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187 (473)
Q Consensus 113 ~~~~~~l~~h~~~V~~~~~~--g~~l~tg~~dg~i~vwd~~--~~~~~~-~~h~~~V~~l~~s~~~~~l~s~~~dg~i~v 187 (473)
+.+...+.||.+.|.+++++ |++|++|+.||+|++||+. +.+..+ ..|...|.+++|+|+++ +++++.|+.+++
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~ 80 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKV 80 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEE
T ss_pred CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEE
Confidence 34678899999999998864 8899999999999999975 344444 46899999999999996 556678999999
Q ss_pred EeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC
Q 012007 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (473)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~ 267 (473)
|+.......... .....+...+.+++|++++.++++++ ++.+.+|+..
T Consensus 81 ~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~-- 128 (299)
T d1nr0a2 81 VPAGGSGVDSSK-----------------------------AVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHG-- 128 (299)
T ss_dssp ECSSSSSSCTTS-----------------------------CCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETT--
T ss_pred eccCCccccccc-----------------------------cccccccccccccccccccccccccc-cccccccccc--
Confidence 998754321110 11123777899999999999877766 5689999854
Q ss_pred eeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC
Q 012007 268 KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG 346 (473)
Q Consensus 268 ~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg 346 (473)
+..... ....+.+++++|++ ++++|+.||.|++||++. ..........|...|++++|+|++.+|++++.|+
T Consensus 129 ~~~~~~--~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 201 (299)
T d1nr0a2 129 KLTEVP--ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG-----ASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR 201 (299)
T ss_dssp EEEEEE--CSSCEEEEEECTTSCEEEEEETTSEEEEEEEET-----TEEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred cccccc--ccccccccccccccccccccccccccccccccc-----cccccccccccccccccccccccccccccccccc
Confidence 333322 34467889999987 888999999999999863 2223334567889999999999999999999999
Q ss_pred cEEEEecCCcccc--cceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCC
Q 012007 347 LVNFWECEKHLSH--GGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDR 422 (473)
Q Consensus 347 ~i~iwd~~~~~~~--~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 422 (473)
.|++||+.+.... ...+.+|...+.+++ +++++|++|+.||.|++||+.+......+.....+...|.++.|.+ +
T Consensus 202 ~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 280 (299)
T d1nr0a2 202 KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN-E 280 (299)
T ss_dssp CEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEE-T
T ss_pred ccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECC-C
Confidence 9999998764433 345567888887765 5699999999999999999987544333333334455677776654 4
Q ss_pred CCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 423 DHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 423 ~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
. +|++|+.||+|++||++
T Consensus 281 ~-------------~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 281 T-------------TIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp T-------------EEEEEETTSCEEEEECC
T ss_pred C-------------EEEEEeCCCEEEEEecc
Confidence 4 79999999999999984
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.3e-36 Score=284.17 Aligned_cols=308 Identities=18% Similarity=0.273 Sum_probs=229.5
Q ss_pred eeeeeeecccE-EEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q 012007 116 IGSIVRKEGHI-YSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSR 192 (473)
Q Consensus 116 ~~~l~~h~~~V-~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~ 192 (473)
..+|.||.+.| .|++++|++||||+.||+|+|||.. +.+..+.+|.+.|.+|+|++++ +|++|+.||.|++|++..
T Consensus 5 ~~tL~GH~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~~ 83 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK 83 (355)
T ss_dssp EEEEECCSSSCEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT-EEEEEETTCCEEEEETTT
T ss_pred cEEECCcCCCcEEEEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC-EEEEEecccccccccccc
Confidence 56799998875 7899999999999999999999965 5678899999999999999864 899999999999999988
Q ss_pred CCeeeEEeecccccc---------ce-eEeecCCCcc-eEEEeecce------------------------eeEeeccCC
Q 012007 193 KNASVHKRVGSLPTF---------KD-YVKSSVNPKN-YVEVRRNRS------------------------VLKIRHYDA 237 (473)
Q Consensus 193 ~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~-~~~~~~~~~------------------------~~~~~~~~~ 237 (473)
............... .. ++....+... +........ .....|...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (355)
T d1nexb2 84 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 163 (355)
T ss_dssp TEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSC
T ss_pred cccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccc
Confidence 765443332221111 11 1111111111 111111000 011112233
Q ss_pred eeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceee
Q 012007 238 VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCL 316 (473)
Q Consensus 238 v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~ 316 (473)
+ ..+.+++++++++..|+.|++||+.+++.+.....+...+.++.+++++ .+++++.|+.|++||++.. ..
T Consensus 164 v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~------~~ 235 (355)
T d1nexb2 164 V--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG------EL 235 (355)
T ss_dssp E--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTC------CE
T ss_pred c--cccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccc------cc
Confidence 3 3345678999999999999999999999999999999999999999887 8999999999999998632 34
Q ss_pred eeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCC
Q 012007 317 AQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 317 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
...+.+|...|.++++++ ++|++++.||.|++||+++..........+...+.++.+++.+|++|+ |+.|+|||+++
T Consensus 236 ~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~t 312 (355)
T d1nexb2 236 MYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRS 312 (355)
T ss_dssp EEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEE-TTEEEEEETTT
T ss_pred cccccccccccccccccc--ceeeeeecccccccccccccceecccccCCceEEEEEcCCCCEEEEEe-CCEEEEEECCC
Confidence 566788999999999974 689999999999999998754432222222334456677888877765 89999999998
Q ss_pred CCceeEEE-EecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 397 SGAHSCLA-VLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 397 ~~~~~~~~-~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
+ +++. .+.+|.+.|++++|+|+. ++++++.||.++||.+
T Consensus 313 g---~~~~~~~~~~~~~V~~v~~~~~~--------------~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 313 G---KLVHANILKDADQIWSVNFKGKT--------------LVAAVEKDGQSFLEIL 352 (355)
T ss_dssp C---CBCCSCTTTTCSEEEEEEEETTE--------------EEEEEESSSCEEEEEE
T ss_pred C---CEEEEEecCCCCCEEEEEEcCCe--------------EEEEEECCCcEEEEEE
Confidence 4 4443 467899999999999863 7889999999776654
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.2e-37 Score=292.97 Aligned_cols=295 Identities=15% Similarity=0.178 Sum_probs=225.7
Q ss_pred ccEEEEE--ecCCEEEEeeCCCcEEEeeCC----ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeee
Q 012007 124 GHIYSLA--ASGDLLYTGSDSKNIRVWKNL----KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASV 197 (473)
Q Consensus 124 ~~V~~~~--~~g~~l~tg~~dg~i~vwd~~----~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~ 197 (473)
.+|.|++ ++|++||+|+.||.|+|||.. ..+..+++|.++|.+|+|+|++++|++|+.|+.|+|||+.++....
T Consensus 8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~ 87 (371)
T d1k8kc_ 8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP 87 (371)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccc
Confidence 4455555 568999999999999999864 2456788999999999999999999999999999999998765433
Q ss_pred EEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee----eEEe
Q 012007 198 HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC----LESI 273 (473)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~----~~~~ 273 (473)
..... +|...|.+++|+|++++|++|+.|++|++|++..... ....
T Consensus 88 ~~~~~------------------------------~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~ 137 (371)
T d1k8kc_ 88 TLVIL------------------------------RINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK 137 (371)
T ss_dssp EEECC------------------------------CCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC
T ss_pred ccccc------------------------------cccccccccccccccccceeecccCcceeeeeecccccccccccc
Confidence 32221 3888999999999999999999999999999876543 2334
Q ss_pred ecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCC------------cceeeeeeeccCCccEEEEEEccCCCEEE
Q 012007 274 NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG------------TKHCLAQVLLKHENAVTALAVNQESAVVY 340 (473)
Q Consensus 274 ~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~------------~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 340 (473)
..|...|.+++|+|++ +|++|+.|+.|++|+....... ...........|...|.+++|+|++++|+
T Consensus 138 ~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 217 (371)
T d1k8kc_ 138 KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA 217 (371)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred cccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccc
Confidence 5788999999999988 8999999999999998643211 11223445677889999999999999999
Q ss_pred EeCCCCcEEEEecCCcccccceeecCcceEEEE--EecCCEEEEEeCCCcEEEEecCCCCcee-E---------------
Q 012007 341 CGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCL--AAAGNLVFSGSADRNICLWRREESGAHS-C--------------- 402 (473)
Q Consensus 341 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~--------------- 402 (473)
+++.|+.|++||+.+.... ..+..|..++.++ ++++++|++|. |+.+++|......... .
T Consensus 218 s~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (371)
T d1k8kc_ 218 WVSHDSTVCLADADKKMAV-ATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL 295 (371)
T ss_dssp EEETTTEEEEEEGGGTTEE-EEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------
T ss_pred ccccCCcceEEeeecccce-eeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccc
Confidence 9999999999999876443 4667788877655 46787777655 7777776654311000 0
Q ss_pred ----------------------EEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCc
Q 012007 403 ----------------------LAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDL 459 (473)
Q Consensus 403 ----------------------~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~ 459 (473)
......|.+.|+++++.+.... ....|+|+|.||.|+||+++..+..+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~---------~~~~~~T~g~Dg~v~iW~~~~~~~~~ 365 (371)
T d1k8kc_ 296 TARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKA---------KCSQFCTTGMDGGMSIWDVRSLESAL 365 (371)
T ss_dssp CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTT---------SCSEEEEEETTSEEEEEEHHHHHHHC
T ss_pred cceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCc---------ceEEEEEEcCCCeEEEEeCCcChhhh
Confidence 0001248889999999886541 11168999999999999997654433
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.7e-36 Score=277.03 Aligned_cols=313 Identities=19% Similarity=0.324 Sum_probs=235.2
Q ss_pred cceeeeeeecccE-EEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 012007 114 GLIGSIVRKEGHI-YSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190 (473)
Q Consensus 114 ~~~~~l~~h~~~V-~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~ 190 (473)
.....|.||++.| .|++++|++||||+.||+|+|||.. +.+..+.+|.+.|.+++|+++ +|++|+.|+.+++|+.
T Consensus 7 ~~~~~l~GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~ 84 (342)
T d2ovrb2 7 KSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNA 84 (342)
T ss_dssp CCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEET
T ss_pred CcCEEECCcCCceEEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccccccccc
Confidence 3467899999987 5789999999999999999999965 567789999999999999976 9999999999999999
Q ss_pred CCCCeeeEEeeccccccc------eeEeecCCCcce-EEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEE
Q 012007 191 SRKNASVHKRVGSLPTFK------DYVKSSVNPKNY-VEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWR 263 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd 263 (473)
.................. .......+.... ............... ......+......+++++.|+.|++||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~i~~~d 163 (342)
T d2ovrb2 85 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGH-VAAVRCVQYDGRRVVSGAYDFMVKVWD 163 (342)
T ss_dssp TTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECC-SSCEEEEEECSSCEEEEETTSCEEEEE
T ss_pred ccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecc-cccceeeccccceeeeecCCCeEEEee
Confidence 877654433322111100 011111111111 111111112222222 222334445667899999999999999
Q ss_pred cCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC
Q 012007 264 ISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS 343 (473)
Q Consensus 264 ~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 343 (473)
+...+.+..+.+|...+..+.+. ...+++++.||.|++||++.. ........|...+.++++++ ++|++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~dg~i~~~d~~~~------~~~~~~~~~~~~v~~~~~~~--~~l~s~s 234 (342)
T d2ovrb2 164 PETETCLHTLQGHTNRVYSLQFD-GIHVVSGSLDTSIRVWDVETG------NCIHTLTGHQSLTSGMELKD--NILVSGN 234 (342)
T ss_dssp GGGTEEEEEECCCSSCEEEEEEC-SSEEEEEETTSCEEEEETTTC------CEEEEECCCCSCEEEEEEET--TEEEEEE
T ss_pred cccceeeEEEcCcccccccccCC-CCEEEEEeCCCeEEEeecccc------eeeeEecccccceeEEecCC--CEEEEEc
Confidence 99999999999998887777663 348999999999999999732 24566778899999888765 6999999
Q ss_pred CCCcEEEEecCCcccccce--eecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEe-----cCCCCceeEE
Q 012007 344 SDGLVNFWECEKHLSHGGV--LRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVL-----TGHTGPVKCL 416 (473)
Q Consensus 344 ~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~h~~~V~~l 416 (473)
.||.|++||+......... ...|...+.+++++++++++|+.||.|++||++++ +++..+ .+|.+.|+++
T Consensus 235 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg---~~i~~~~~~~~~~~~~~v~~v 311 (342)
T d2ovrb2 235 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTG---EFIRNLVTLESGGSGGVVWRI 311 (342)
T ss_dssp TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTC---CEEEEEEECTTGGGTCEEEEE
T ss_pred CCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCC---CEEEEEecccCCCCCCCEEEE
Confidence 9999999999865433222 23567888999999999999999999999999984 444443 3578899999
Q ss_pred EEecCCCCCcccccCCCccEEEEEeeCCCc----EEEEEcCC
Q 012007 417 AVEEDRDHDHEYHQKGDQRWTVYSGSLDKS----VKVWRVSE 454 (473)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~----v~iW~i~~ 454 (473)
+|+|++. +|++|+.||+ |++||+..
T Consensus 312 ~~s~~~~-------------~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 312 RASNTKL-------------VCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp EECSSEE-------------EEEEECSSSSSCCEEEEEECCC
T ss_pred EECCCCC-------------EEEEEeCCCCCeeEEEEEeCCC
Confidence 9999987 8999999986 99999874
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.3e-35 Score=271.78 Aligned_cols=249 Identities=16% Similarity=0.162 Sum_probs=205.9
Q ss_pred cceeeeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCCcc----ccccccCcccEEEEEEeCCCCEEEEEeC--CCeE
Q 012007 114 GLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKE----FSGFKSNSGLVKAIIISGDSNKIFTGHQ--DGKI 185 (473)
Q Consensus 114 ~~~~~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~~----~~~~~~h~~~V~~l~~s~~~~~l~s~~~--dg~i 185 (473)
.....+.+|.+.|.++.+ +|++||+|+.||+|+|||.... ...+..|.+.|.+++|+|++++|++++. +..+
T Consensus 49 ~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~ 128 (311)
T d1nr0a1 49 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG 128 (311)
T ss_dssp SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccc
Confidence 455677899999999876 5899999999999999997633 2346789999999999999999999986 4569
Q ss_pred EEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCE-EEEEeCCCCEEEEEc
Q 012007 186 RIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGL-LYSGSWDKTLKVWRI 264 (473)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~s~s~dg~v~vwd~ 264 (473)
+||++++++..... .+|.+.|.+++|+|++++ |++|+.|+.|++||+
T Consensus 129 ~v~~~~~~~~~~~l--------------------------------~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~ 176 (311)
T d1nr0a1 129 HVFLFDTGTSNGNL--------------------------------TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG 176 (311)
T ss_dssp EEEETTTCCBCBCC--------------------------------CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEET
T ss_pred cccccccccccccc--------------------------------cccccccccccccccceeeecccccccccccccc
Confidence 99999877643321 148899999999998875 888999999999999
Q ss_pred CCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcc-eeeeeeeccCCccEEEEEEccCCCEEEEe
Q 012007 265 SDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTK-HCLAQVLLKHENAVTALAVNQESAVVYCG 342 (473)
Q Consensus 265 ~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~ 342 (473)
++++....+..|...|.++.++|++ ++++++.|+.|++||.+....... ........+|...|++++|+|++++|++|
T Consensus 177 ~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tg 256 (311)
T d1nr0a1 177 PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 256 (311)
T ss_dssp TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE
T ss_pred cccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEE
Confidence 9999999999999999999999997 889999999999999875432111 11112345688999999999999999999
Q ss_pred CCCCcEEEEecCCcccccceeecC---cceEEEEEecCCEEEEEeCCCcEEEEecC
Q 012007 343 SSDGLVNFWECEKHLSHGGVLRGH---KMAVLCLAAAGNLVFSGSADRNICLWRRE 395 (473)
Q Consensus 343 ~~dg~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~l~s~~~dg~i~iwd~~ 395 (473)
+.||.|+|||++++.... .+..| ...+.++.+++++|++++.||.|++||.+
T Consensus 257 s~Dg~v~iwd~~t~~~~~-~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 257 SADKTIKIWNVATLKVEK-TIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp ETTSEEEEEETTTTEEEE-EEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred eCCCeEEEEECCCCcEEE-EEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 999999999998865443 33333 34667888999999999999999999974
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.2e-35 Score=270.45 Aligned_cols=271 Identities=15% Similarity=0.195 Sum_probs=219.2
Q ss_pred ccceeeeeeecccEEEEEecCCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q 012007 113 NGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSR 192 (473)
Q Consensus 113 ~~~~~~l~~h~~~V~~~~~~g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~ 192 (473)
.+++++|.+|.+.|.+++++. |+||+.||+|++||.... ..+|...|.++++++++ .+++++.|++|++|++..
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~--l~sgs~Dg~v~~Wd~~~~---~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~ 76 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP--LISGSYDGRIMEWSSSSM---HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITK 76 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT--TEEEETTSCEEETTTTEE---ECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEE
T ss_pred cceeEEECCCCCceEEEEECc--EEEEeCCCeEEEEECCCC---CCCCCCCEEEEEecCCC-eEEEEeeccccccccccc
Confidence 467899999999999999986 999999999999997653 46799999999998765 689999999999999753
Q ss_pred CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEE
Q 012007 193 KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES 272 (473)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~ 272 (473)
.+ ....+.++.+.+++..++++. ++.+.+|+..+++.+..
T Consensus 77 ~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 116 (287)
T d1pgua2 77 HE---------------------------------------FGSQPKVASANNDGFTAVLTN-DDDLLILQSFTGDIIKS 116 (287)
T ss_dssp EE---------------------------------------CSSCEEEEEECSSSEEEEEET-TSEEEEEETTTCCEEEE
T ss_pred cc---------------------------------------cccceeeeeeccCCceEEEee-cccceeeeccceeeeee
Confidence 21 344577888888877666654 66799999999998888
Q ss_pred eecCCCceeEEEEcCCCEEEEEeCC-CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEE
Q 012007 273 INAHDDAINSVVAGFDSLVFTGSAD-GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFW 351 (473)
Q Consensus 273 ~~~~~~~v~~l~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iw 351 (473)
+..+ ..+.++.... ..+++++.+ +.+++|++.. ..........|...+++++|+|++.+|++|+.||.|++|
T Consensus 117 ~~~~-~~~~~~~~~~-~~~~v~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~ 189 (287)
T d1pgua2 117 VRLN-SPGSAVSLSQ-NYVAVGLEEGNTIQVFKLSD-----LEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLY 189 (287)
T ss_dssp EECS-SCEEEEEECS-SEEEEEETTTSCEEEEETTE-----EEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cccc-ceeeeeeccC-cceeeeccccceeeeeeccc-----cceeeeeeeccCCceeEEEeccCccccccccccccccce
Confidence 8744 3444544432 355555555 5799999862 222333445678899999999999999999999999999
Q ss_pred ecCCcccccceeecCcceEEEEEe------------cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEe
Q 012007 352 ECEKHLSHGGVLRGHKMAVLCLAA------------AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVE 419 (473)
Q Consensus 352 d~~~~~~~~~~~~~~~~~v~~~~~------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~ 419 (473)
|+.+.......+.+|...+.++++ ++.+|++|+.|++|+|||+... ...+..+.+|.+.|++++|+
T Consensus 190 d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~--~~~~~~~~~h~~~V~~v~~~ 267 (287)
T d1pgua2 190 DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP--MKIIKALNAHKDGVNNLLWE 267 (287)
T ss_dssp ETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT--TCCEEETTSSTTCEEEEEEE
T ss_pred eecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCC--CeEEEEeCCCCCCeEEEEEC
Confidence 998876665667789988988875 3679999999999999999764 45677888999999999999
Q ss_pred cCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 420 EDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
|++ .|+|++.||.|++|++
T Consensus 268 ~~~--------------~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 268 TPS--------------TLVSSGADACIKRWNV 286 (287)
T ss_dssp ETT--------------EEEEEETTSCEEEEEE
T ss_pred CCC--------------EEEEEECCCeEEEEEE
Confidence 986 5899999999999996
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.6e-34 Score=257.10 Aligned_cols=275 Identities=24% Similarity=0.411 Sum_probs=223.8
Q ss_pred eeeeeeecccEEEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Q 012007 116 IGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRK 193 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~ 193 (473)
+....+|...|+|++++|++||||+.||+|+|||.. +.+..+.+|.+.|.+|+| ++++|++|+.||.|++|++..+
T Consensus 8 i~~~~~~~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~ 85 (293)
T d1p22a2 8 IHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG 85 (293)
T ss_dssp EECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred EeccCCCCCCEEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccc
Confidence 555667888999999999999999999999999965 567789999999999987 5679999999999999999887
Q ss_pred CeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee---e
Q 012007 194 NASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC---L 270 (473)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~---~ 270 (473)
....... ........+......++++..++.+.+||...... .
T Consensus 86 ~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (293)
T d1p22a2 86 EMLNTLI----------------------------------HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLR 131 (293)
T ss_dssp CEEEEEC----------------------------------CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEE
T ss_pred ccccccc----------------------------------ccccccccccccccceeecccccceeEeecccccccccc
Confidence 6543332 11222334556677899999999999999986543 4
Q ss_pred EEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEE
Q 012007 271 ESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350 (473)
Q Consensus 271 ~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~i 350 (473)
..+..|...+.++.+.+ ..+++++.|+.|++||++.. .....+.++...+..+.++ +.++++++.||.|++
T Consensus 132 ~~~~~~~~~v~~~~~~~-~~~~~~s~d~~i~~~d~~~~------~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i 202 (293)
T d1p22a2 132 RVLVGHRAAVNVVDFDD-KYIVSASGDRTIKVWNTSTC------EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRL 202 (293)
T ss_dssp EEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred ccccccccccccceecc-cccccccCCCceeeecCCCC------cEEEEEcccccccccccCC--CCeEEEecCCCEEEE
Confidence 45567888888877754 46788899999999999733 2345667788888888776 568999999999999
Q ss_pred EecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCC------CceeEEEEecCCCCceeEEEEecCCCC
Q 012007 351 WECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREES------GAHSCLAVLTGHTGPVKCLAVEEDRDH 424 (473)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~h~~~V~~l~~~~~~~~ 424 (473)
||+++... .....+|...+.++++++.+|++|+.||.|++||+... ....++..+.+|.+.|++++|++ .
T Consensus 203 ~d~~~~~~-~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~--~- 278 (293)
T d1p22a2 203 WDIECGAC-LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--F- 278 (293)
T ss_dssp EETTTCCE-EEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS--S-
T ss_pred Eeccccee-eeeecccceeeeeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcC--C-
Confidence 99987544 35667888899999999999999999999999997531 22457888999999999999964 3
Q ss_pred CcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 425 DHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 425 ~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
+|+|||.||+|+|||
T Consensus 279 ------------~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 279 ------------QIVSSSHDDTILIWD 293 (293)
T ss_dssp ------------CEEECCSSSEEEEEC
T ss_pred ------------EEEEEecCCEEEEeC
Confidence 699999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-34 Score=268.40 Aligned_cols=248 Identities=17% Similarity=0.298 Sum_probs=207.3
Q ss_pred cCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCe
Q 012007 159 SNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAV 238 (473)
Q Consensus 159 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 238 (473)
.|...|.+++|+|+|++|++|+ ||.|+|||+........... ....+|.+.|
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~---------------------------~~~~~h~~~I 100 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQ---------------------------LDCLNRDNYI 100 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEE---------------------------EECSCTTSBE
T ss_pred CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEE---------------------------eeecCCCCcE
Confidence 6999999999999999999987 89999999987643221110 1112488999
Q ss_pred eEEEEcCCCCEEEEEeCCCCEEEEEcCC--CeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCccee
Q 012007 239 SCLSLNAEQGLLYSGSWDKTLKVWRISD--CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHC 315 (473)
Q Consensus 239 ~~l~~~~~~~~l~s~s~dg~v~vwd~~~--~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~ 315 (473)
.+++|+|++++|++|+.||.|++||+.. .+....+..|...+.++.+++++ .+++++.|+.|++|+++.. .
T Consensus 101 ~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~------~ 174 (337)
T d1gxra_ 101 RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ------T 174 (337)
T ss_dssp EEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------E
T ss_pred EEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccc------c
Confidence 9999999999999999999999999874 45667788899999999999987 8899999999999998632 2
Q ss_pred eeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEe
Q 012007 316 LAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWR 393 (473)
Q Consensus 316 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd 393 (473)
.......|...|.+++|++++..+++++.|+.|++||+++..... ...|...+.++. +++++|++|+.|+.|++||
T Consensus 175 ~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~--~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d 252 (337)
T d1gxra_ 175 LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ--QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLH 252 (337)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE--EEECSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccceeec--ccccccceEEEEEcccccccceecccccccccc
Confidence 445667889999999999999999999999999999998765442 334677777665 4689999999999999999
Q ss_pred cCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCc
Q 012007 394 REESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDL 459 (473)
Q Consensus 394 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~ 459 (473)
+... .. .....|...|++++|+|+++ +|++|+.||.|++||+..++...
T Consensus 253 ~~~~---~~-~~~~~~~~~i~~v~~s~~g~-------------~l~s~s~Dg~i~iwd~~~~~~~~ 301 (337)
T d1gxra_ 253 VNKP---DK-YQLHLHESCVLSLKFAYCGK-------------WFVSTGKDNLLNAWRTPYGASIF 301 (337)
T ss_dssp TTSS---CE-EEECCCSSCEEEEEECTTSS-------------EEEEEETTSEEEEEETTTCCEEE
T ss_pred cccc---cc-ccccccccccceEEECCCCC-------------EEEEEeCCCeEEEEECCCCCEEE
Confidence 9873 22 34568999999999999998 89999999999999998876543
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.3e-34 Score=265.84 Aligned_cols=282 Identities=16% Similarity=0.154 Sum_probs=214.5
Q ss_pred EEEecCCEEEEeeCCC-cEEEeeCC----ccccccccC-cccEEEEEEeC--CCCEEEEEeCCCeEEEEeCCCCCeeeEE
Q 012007 128 SLAASGDLLYTGSDSK-NIRVWKNL----KEFSGFKSN-SGLVKAIIISG--DSNKIFTGHQDGKIRIWKVSRKNASVHK 199 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg-~i~vwd~~----~~~~~~~~h-~~~V~~l~~s~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 199 (473)
++.++|+.|+.++.+. .|+.|+.. .....+.+| ...|++++|+| ++.+|++|+.||+|+|||+.........
T Consensus 24 ~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~ 103 (325)
T d1pgua1 24 SYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSV 103 (325)
T ss_dssp EEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEE
T ss_pred EECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeee
Confidence 5666788888887554 46778743 334566777 46899999997 5689999999999999998765433222
Q ss_pred eeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC--CCCEEEEEcCCCeeeEEeecCC
Q 012007 200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW--DKTLKVWRISDCKCLESINAHD 277 (473)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~--dg~v~vwd~~~~~~~~~~~~~~ 277 (473)
... .......|..+|.+++|++++++|++++. ++.+++|+..+++++..+.+|.
T Consensus 104 ~~~------------------------~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 159 (325)
T d1pgua1 104 EVN------------------------VKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS 159 (325)
T ss_dssp EEE------------------------EEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCS
T ss_pred ecc------------------------cccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecc
Confidence 211 00112248889999999999999988764 6789999999999999999999
Q ss_pred CceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccC-CCEEEEeCCCCcEEEEecC
Q 012007 278 DAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE-SAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 278 ~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i~iwd~~ 354 (473)
..|.+++|++++ .+++++.|+.|++||..... ..........|...|++++|+|+ +.+|++++.|+.|++||++
T Consensus 160 ~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~---~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~ 236 (325)
T d1pgua1 160 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK---FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK 236 (325)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE---EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT
T ss_pred cccccccccccccceEEEeecccccccccccccc---cceecccccCCCCccEEeeeccccceeccccccccceeeeeec
Confidence 999999999987 67889999999999986321 22223345578889999999996 6899999999999999998
Q ss_pred CcccccceeecCcceE----EEEE-ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCc--eeEEEEecCCCCCcc
Q 012007 355 KHLSHGGVLRGHKMAV----LCLA-AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGP--VKCLAVEEDRDHDHE 427 (473)
Q Consensus 355 ~~~~~~~~~~~~~~~v----~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~--V~~l~~~~~~~~~~~ 427 (473)
+.... ..+.+|...+ .++. +++++|++++.|+.|+|||+.+ .+++..+..|... +..+++.+.+..
T Consensus 237 ~~~~~-~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 309 (325)
T d1pgua1 237 SGEFL-KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT---SKCVQKWTLDKQQLGNQQVGVVATGNG--- 309 (325)
T ss_dssp TCCEE-EECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTT---TEEEEEEECCTTCGGGCEEEEEEEETT---
T ss_pred ccccc-ccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCC---CCEEEEEEecCCcccCeEEEEEECCCC---
Confidence 76543 4555666544 4444 4689999999999999999998 4667766655543 445555443322
Q ss_pred cccCCCccEEEEEeeCCCcEEEEEc
Q 012007 428 YHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 428 ~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
+|++++.||.|+|||+
T Consensus 310 ---------~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 310 ---------RIISLSLDGTLNFYEL 325 (325)
T ss_dssp ---------EEEEEETTSCEEEEET
T ss_pred ---------EEEEEECCCEEEEEEC
Confidence 7999999999999996
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5.7e-34 Score=269.36 Aligned_cols=248 Identities=15% Similarity=0.095 Sum_probs=202.5
Q ss_pred CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCee
Q 012007 160 NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVS 239 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (473)
..++|+|++|+|+|++||+|+.||.|+|||+.+++......+ .+|.+.|.
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l------------------------------~gH~~~V~ 55 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL------------------------------KEHNGQVT 55 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE------------------------------ECCSSCEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEe------------------------------cCCCCCEE
Confidence 357899999999999999999999999999987654332222 25999999
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEcCCCeee--EEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceee
Q 012007 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCL--ESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCL 316 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~--~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~ 316 (473)
+|+|+|++++|++|+.|++|++||+.++... ..+..|...|.++.|+|++ .|++++.|+.|++|++.... .....
T Consensus 56 ~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~--~~~~~ 133 (371)
T d1k8kc_ 56 GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN--DWWVC 133 (371)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTT--TEEEE
T ss_pred EEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccc--ccccc
Confidence 9999999999999999999999999877644 4456788999999999998 89999999999999987433 23334
Q ss_pred eeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccc-----------------ccceeecCcceEEEE--EecC
Q 012007 317 AQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLS-----------------HGGVLRGHKMAVLCL--AAAG 377 (473)
Q Consensus 317 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----------------~~~~~~~~~~~v~~~--~~~~ 377 (473)
......|...|.+++|+|++.+|++|+.|+.|++||...... ......+|...+.++ ++++
T Consensus 134 ~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 213 (371)
T d1k8kc_ 134 KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG 213 (371)
T ss_dssp EEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS
T ss_pred cccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccc
Confidence 455678899999999999999999999999999999754211 112334677777655 4679
Q ss_pred CEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 378 NLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 378 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
++|++++.|+.|++||+.. ...+..+..|..+|.+++|+|++. +|++ +.|+.+++|......
T Consensus 214 ~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~v~s~~fs~d~~-------------~la~-g~d~~~~~~~~~~~~ 275 (371)
T d1k8kc_ 214 SRVAWVSHDSTVCLADADK---KMAVATLASETLPLLAVTFITESS-------------LVAA-GHDCFPVLFTYDSAA 275 (371)
T ss_dssp SEEEEEETTTEEEEEEGGG---TTEEEEEECSSCCEEEEEEEETTE-------------EEEE-ETTSSCEEEEEETTT
T ss_pred ccccccccCCcceEEeeec---ccceeeeecccccceeeeecCCCC-------------EEEE-EcCCceEEEEeeCCC
Confidence 9999999999999999988 567888889999999999999987 5665 557888887766543
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.8e-33 Score=258.08 Aligned_cols=258 Identities=23% Similarity=0.406 Sum_probs=223.1
Q ss_pred EeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEee
Q 012007 147 VWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRR 225 (473)
Q Consensus 147 vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (473)
.|... .....+++|.+.|++|+|+|++++|+||+.||+|+|||+.+++......
T Consensus 2 ~w~p~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~------------------------- 56 (317)
T d1vyhc1 2 EWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK------------------------- 56 (317)
T ss_dssp CCCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC-------------------------
T ss_pred ccCCCCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEe-------------------------
Confidence 45433 3345789999999999999999999999999999999999887544332
Q ss_pred cceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEe
Q 012007 226 NRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWR 304 (473)
Q Consensus 226 ~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd 304 (473)
+|...|.+++|++++.+++++..++.+.+|+....+....+..|...+.++.+++++ .+++++.|+.+++||
T Consensus 57 -------~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 129 (317)
T d1vyhc1 57 -------GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 129 (317)
T ss_dssp -------CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred -------CCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEee
Confidence 389999999999999999999999999999999999999999999999999999987 899999999999999
Q ss_pred CcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe---------
Q 012007 305 RELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--------- 375 (473)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--------- 375 (473)
++.. .....+..|...+.+++|++++.+|++++.|+.|++|++.+... ...+.+|...+.++.+
T Consensus 130 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~ 202 (317)
T d1vyhc1 130 VQTG------YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC-KAELREHRHVVECISWAPESSYSSI 202 (317)
T ss_dssp TTTC------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECCSCGGGGG
T ss_pred cccc------eeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeecccee-eEEEecCCCCceEEEEeecccccee
Confidence 9743 23566778999999999999999999999999999999987543 3455667776766554
Q ss_pred -------------cCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEee
Q 012007 376 -------------AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS 442 (473)
Q Consensus 376 -------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s 442 (473)
.+.++++++.|+.|++|++.+ ..++..+.+|...|++++|+|++. +|++|+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~-------------~l~s~~ 266 (317)
T d1vyhc1 203 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST---GMCLMTLVGHDNWVRGVLFHSGGK-------------FILSCA 266 (317)
T ss_dssp GGCCSCC-------CCEEEEEETTSEEEEEETTT---TEEEEEEECCSSCEEEEEECSSSS-------------CEEEEE
T ss_pred eccccceeeeeccCCceeEeccCCCEEEEEECCC---CcEEEEEeCCCCCEEEEEECCCCC-------------EEEEEE
Confidence 256899999999999999998 578889999999999999999998 899999
Q ss_pred CCCcEEEEEcCCCCCCc
Q 012007 443 LDKSVKVWRVSEHAPDL 459 (473)
Q Consensus 443 ~Dg~v~iW~i~~~~~~~ 459 (473)
.||.|+|||+.++++..
T Consensus 267 ~dg~i~iwd~~~~~~~~ 283 (317)
T d1vyhc1 267 DDKTLRVWDYKNKRCMK 283 (317)
T ss_dssp TTTEEEEECCTTSCCCE
T ss_pred CCCeEEEEECCCCcEEE
Confidence 99999999998876543
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.7e-33 Score=265.94 Aligned_cols=287 Identities=21% Similarity=0.336 Sum_probs=213.7
Q ss_pred EeeCCCcEEEeeCC--c----cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeE
Q 012007 138 TGSDSKNIRVWKNL--K----EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYV 211 (473)
Q Consensus 138 tg~~dg~i~vwd~~--~----~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 211 (473)
.+..++.+.+|+.. + .+....+|.+.|+||+|+|||++|++|+ |+.|+|||+.+++.............
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~---- 107 (388)
T d1erja_ 33 KKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANK---- 107 (388)
T ss_dssp EEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC----------
T ss_pred ccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccc----
Confidence 34456777788743 1 1223346999999999999999999986 89999999998876554432211000
Q ss_pred eecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-E
Q 012007 212 KSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-L 290 (473)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~ 290 (473)
............|...|.+++|+|++++|++|+.||.|++||...++.+..+.+|...|.++.+++++ .
T Consensus 108 ----------~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 177 (388)
T d1erja_ 108 ----------DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK 177 (388)
T ss_dssp ---------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred ----------cccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccccccccccccccccc
Confidence 00011112223588899999999999999999999999999999999999999999999999999887 8
Q ss_pred EEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEc-cCCCEEEEeCCCCcEEEEecCCccccc------cee
Q 012007 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVN-QESAVVYCGSSDGLVNFWECEKHLSHG------GVL 363 (473)
Q Consensus 291 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~------~~~ 363 (473)
+++++.++.+++||.+.. ........+. ...++.+. +++.+|++++.||.|++||.++..... ...
T Consensus 178 ~~~~~~~~~i~~~d~~~~------~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~ 250 (388)
T d1erja_ 178 LVSGSGDRTVRIWDLRTG------QCSLTLSIED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESG 250 (388)
T ss_dssp EEEEETTSEEEEEETTTT------EEEEEEECSS-CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------
T ss_pred ccccccceeeeeeecccc------cccccccccc-ccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccc
Confidence 899999999999998632 1223333344 44455555 488999999999999999998654332 223
Q ss_pred ecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCC---------ceeEEEEecCCCCceeEEEEecCCCCCcccccCC
Q 012007 364 RGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESG---------AHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKG 432 (473)
Q Consensus 364 ~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~ 432 (473)
.+|...|.++. +++++|++|+.||.|++||+.... ...+......|...|++++|+|++.
T Consensus 251 ~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--------- 321 (388)
T d1erja_ 251 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE--------- 321 (388)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC---------
T ss_pred cCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCC---------
Confidence 46777887766 468999999999999999987532 1234556678999999999999998
Q ss_pred CccEEEEEeeCCCcEEEEEcCCCCCCc
Q 012007 433 DQRWTVYSGSLDKSVKVWRVSEHAPDL 459 (473)
Q Consensus 433 ~~~~~l~s~s~Dg~v~iW~i~~~~~~~ 459 (473)
+|++|+.||.|++||+.++++..
T Consensus 322 ----~l~sg~~dg~i~vwd~~~~~~~~ 344 (388)
T d1erja_ 322 ----YILSGSKDRGVLFWDKKSGNPLL 344 (388)
T ss_dssp ----EEEEEETTSEEEEEETTTCCEEE
T ss_pred ----EEEEEeCCCEEEEEECCCCcEEE
Confidence 89999999999999999876543
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1e-33 Score=259.04 Aligned_cols=250 Identities=16% Similarity=0.217 Sum_probs=202.6
Q ss_pred cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEe
Q 012007 153 EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKI 232 (473)
Q Consensus 153 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (473)
..+.+.||.+.|++|+|+|++++|++|+.||.|++||+.+++.......
T Consensus 4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~------------------------------- 52 (299)
T d1nr0a2 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD------------------------------- 52 (299)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSC-------------------------------
T ss_pred cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcC-------------------------------
Confidence 4567899999999999999999999999999999999988765432211
Q ss_pred eccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCee---eEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccC
Q 012007 233 RHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC---LESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 233 ~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~---~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~ 309 (473)
+|...|.+++|+|++. +++++.|+.+++|+...... ......+...+.++++++++.+++++.++.+++|+...
T Consensus 53 ~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~-- 129 (299)
T d1nr0a2 53 VHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK-- 129 (299)
T ss_dssp SCSSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE--
T ss_pred CCCCcEEEEEeeccce-eecccceeeEEEeccCCcccccccccccccccccccccccccccccccccccccccccccc--
Confidence 3889999999999987 45667799999999865432 12234567788999999999777777788999998641
Q ss_pred CCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEe--cCCEEEEEeCCC
Q 012007 310 KGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA--AGNLVFSGSADR 387 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg 387 (473)
.........+.+++|+|++++|++++.||.|++||+++..........|...+.++.+ ++++|++++.|+
T Consensus 130 --------~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 201 (299)
T d1nr0a2 130 --------LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR 201 (299)
T ss_dssp --------EEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred --------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1111234567899999999999999999999999998765444455678888877765 589999999999
Q ss_pred cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 388 NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
.|++||+.+.........+.+|...|++++|+|++. +|++|+.||.|++||+..+..
T Consensus 202 ~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-------------~l~sgs~dg~i~iwd~~~~~~ 258 (299)
T d1nr0a2 202 KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV-------------RLATGSLDNSVIVWNMNKPSD 258 (299)
T ss_dssp CEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS-------------EEEEEETTSCEEEEETTCTTS
T ss_pred cccccccccccccccccccccccccccccccccccc-------------ceEEEcCCCEEEEEECCCCCc
Confidence 999999987554555667788999999999999998 899999999999999987653
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.7e-32 Score=259.88 Aligned_cols=312 Identities=16% Similarity=0.188 Sum_probs=214.4
Q ss_pred eeeeeeecccEEEEEecCCEEEEeeCCCcEEEeeCCcc--------ccccccCcccEEEEEEe----C---CCCEEEEEe
Q 012007 116 IGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKE--------FSGFKSNSGLVKAIIIS----G---DSNKIFTGH 180 (473)
Q Consensus 116 ~~~l~~h~~~V~~~~~~g~~l~tg~~dg~i~vwd~~~~--------~~~~~~h~~~V~~l~~s----~---~~~~l~s~~ 180 (473)
....++|.+.|+++++++++|+||+.|++|+|||.... ......|...+..+... . ++.++++++
T Consensus 7 ~~~~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 86 (393)
T d1sq9a_ 7 ANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 86 (393)
T ss_dssp EEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred eecCCcccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence 34567999999999999999999999999999985321 11122344443333221 1 234788999
Q ss_pred CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC-----CCEEEEEeC
Q 012007 181 QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE-----QGLLYSGSW 255 (473)
Q Consensus 181 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-----~~~l~s~s~ 255 (473)
.||.|++|++................ .....+...+..++|.++ +.++++++.
T Consensus 87 ~dg~v~~w~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (393)
T d1sq9a_ 87 FSGDLLFYRITREDETKKVIFEKLDL----------------------LDSDMKKHSFWALKWGASNDRLLSHRLVATDV 144 (393)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEECC----------------------SCTTGGGSCEEEEEEECCC----CEEEEEEET
T ss_pred CCCcEEEEEccCCCceeeeeccccce----------------------eeeccCCCceEEEEEecCCCcccccEEEEEcC
Confidence 99999999976544322111100000 000115556777788764 468999999
Q ss_pred CCCEEEEEcCCCe------------------eeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeee
Q 012007 256 DKTLKVWRISDCK------------------CLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLA 317 (473)
Q Consensus 256 dg~v~vwd~~~~~------------------~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 317 (473)
||++++|++.... .......+...+.+++++|+++|++|+.||.|++||++...........
T Consensus 145 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~ 224 (393)
T d1sq9a_ 145 KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQ 224 (393)
T ss_dssp TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred CCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccc
Confidence 9999999984221 1111234556789999999999999999999999999754432233334
Q ss_pred eeeccCCccEEEEEEccCCCEEEEeCCCCc---EEEEecCCccccc------------ceeecCcceEEEEEe--cCCEE
Q 012007 318 QVLLKHENAVTALAVNQESAVVYCGSSDGL---VNFWECEKHLSHG------------GVLRGHKMAVLCLAA--AGNLV 380 (473)
Q Consensus 318 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~------------~~~~~~~~~v~~~~~--~~~~l 380 (473)
..+.+|...|++++|+|++++|++|+.|+. |++||++++.... ..+.+|...|+++++ ++++|
T Consensus 225 ~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l 304 (393)
T d1sq9a_ 225 HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 304 (393)
T ss_dssp C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE
T ss_pred cccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCee
Confidence 566789999999999999999999998874 8999998654322 223579988877765 68999
Q ss_pred EEEeCCCcEEEEecCCCCceeEEEEecCCCCcee----EEEEecCCCCCcc--------------cccCCCccEEEEEee
Q 012007 381 FSGSADRNICLWRREESGAHSCLAVLTGHTGPVK----CLAVEEDRDHDHE--------------YHQKGDQRWTVYSGS 442 (473)
Q Consensus 381 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~----~l~~~~~~~~~~~--------------~~~~~~~~~~l~s~s 442 (473)
++|+.|++|+|||+.+ .+++.++.+|.+.|. .++|++++..... .....+....|++++
T Consensus 305 ~S~s~D~~v~vWd~~~---g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (393)
T d1sq9a_ 305 CSAGWDGKLRFWDVKT---KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVC 381 (393)
T ss_dssp EEEETTSEEEEEETTT---TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEE
T ss_pred EEECCCCEEEEEECCC---CCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEE
Confidence 9999999999999998 588999999987664 3556655542110 000111122578888
Q ss_pred CCCcEEEEEc
Q 012007 443 LDKSVKVWRV 452 (473)
Q Consensus 443 ~Dg~v~iW~i 452 (473)
.|+.|++|+-
T Consensus 382 ~d~~ir~~~~ 391 (393)
T d1sq9a_ 382 LDRSIRWFRE 391 (393)
T ss_dssp TTTEEEEEEE
T ss_pred cCCeEEEEeC
Confidence 8888888863
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.98 E-value=8.2e-30 Score=236.54 Aligned_cols=252 Identities=16% Similarity=0.250 Sum_probs=211.1
Q ss_pred cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEe
Q 012007 153 EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKI 232 (473)
Q Consensus 153 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (473)
..+++++|.+.|++|+|+|++++|++|+.||.|+|||+.+++......
T Consensus 47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~-------------------------------- 94 (340)
T d1tbga_ 47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP-------------------------------- 94 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEE--------------------------------
T ss_pred eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEe--------------------------------
Confidence 445689999999999999999999999999999999999886544332
Q ss_pred eccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCC----eeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCccc
Q 012007 233 RHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC----KCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQ 308 (473)
Q Consensus 233 ~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~----~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~ 308 (473)
.|...|.+++|+|++.++++|+.|+.+.+|+.... +....+..|...........+..+.....+.....+....
T Consensus 95 ~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 173 (340)
T d1tbga_ 95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET- 173 (340)
T ss_dssp CSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTT-
T ss_pred cccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccccccccccccccccccccccccccc-
Confidence 38899999999999999999999999999998653 3456677888888888777778889999999999998752
Q ss_pred CCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCC
Q 012007 309 GKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSAD 386 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~d 386 (473)
.........+...+....+.+.+.++++++.|+.|++||+++... ...+.+|...|.+++ +++++|++|+.|
T Consensus 174 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~-~~~~~~h~~~i~~v~~~p~~~~l~s~s~d 247 (340)
T d1tbga_ 174 -----GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC-RQTFTGHESDINAICFFPNGNAFATGSDD 247 (340)
T ss_dssp -----TEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred -----ccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcE-EEEEeCCCCCeEEEEECCCCCEEEEEeCC
Confidence 223445566778899999999999999999999999999987644 356678988887766 468999999999
Q ss_pred CcEEEEecCCCCceeEEEE--ecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCc
Q 012007 387 RNICLWRREESGAHSCLAV--LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDL 459 (473)
Q Consensus 387 g~i~iwd~~~~~~~~~~~~--~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~ 459 (473)
|.|++|++... ..+.. ...|...|++++|+|++. +|++|+.||.|++||+.+++...
T Consensus 248 ~~i~~~~~~~~---~~~~~~~~~~~~~~i~~~~~s~~~~-------------~l~~g~~dg~i~iwd~~~~~~~~ 306 (340)
T d1tbga_ 248 ATCRLFDLRAD---QELMTYSHDNIICGITSVSFSKSGR-------------LLLAGYDDFNCNVWDALKADRAG 306 (340)
T ss_dssp SCEEEEETTTT---EEEEEECCTTCCSCEEEEEECSSSC-------------EEEEEETTSCEEEEETTTCCEEE
T ss_pred CeEEEEeeccc---ccccccccccccCceEEEEECCCCC-------------EEEEEECCCEEEEEECCCCcEEE
Confidence 99999999873 33333 456677899999999998 89999999999999998876443
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.4e-29 Score=234.66 Aligned_cols=247 Identities=25% Similarity=0.390 Sum_probs=187.6
Q ss_pred ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeE
Q 012007 152 KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231 (473)
Q Consensus 152 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (473)
+....+++|.+.|.+ +++++|++||||+.||+|+|||+.+++......
T Consensus 7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~------------------------------- 54 (342)
T d2ovrb2 7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV------------------------------- 54 (342)
T ss_dssp CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECC-------------------------------
T ss_pred CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEe-------------------------------
Confidence 556678999999865 355678899999999999999999887543322
Q ss_pred eeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEE----------------------------
Q 012007 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV---------------------------- 283 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l---------------------------- 283 (473)
+|...|.+++|++ ++|++|+.|+.+++|+............+...+...
T Consensus 55 -~h~~~V~~v~~~~--~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 131 (342)
T d2ovrb2 55 -GHTGGVWSSQMRD--NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLH 131 (342)
T ss_dssp -CCSSCEEEEEEET--TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEE
T ss_pred -CCCCCEEEEEeCC--CccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeeccccccee
Confidence 4899999999987 489999999999999987765544433332222211
Q ss_pred -----------EEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEe
Q 012007 284 -----------VAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWE 352 (473)
Q Consensus 284 -----------~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd 352 (473)
.......+++++.|+.|++||.+. ......+.+|...+..+.+ ++.+|++++.||.|++||
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~------~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d 203 (342)
T d2ovrb2 132 VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET------ETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWD 203 (342)
T ss_dssp EEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGG------TEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEE
T ss_pred eeecccccceeeccccceeeeecCCCeEEEeeccc------ceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEee
Confidence 111223577788888888888752 2234556677766665554 678999999999999999
Q ss_pred cCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCC
Q 012007 353 CEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKG 432 (473)
Q Consensus 353 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~ 432 (473)
++.... .....+|...+.++++++++|++|+.|+.|++||+........+.....|...+.++.++++
T Consensus 204 ~~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 271 (342)
T d2ovrb2 204 VETGNC-IHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN----------- 271 (342)
T ss_dssp TTTCCE-EEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSS-----------
T ss_pred ccccee-eeEecccccceeEEecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCC-----------
Confidence 987544 45677899999999999999999999999999999885444444444556777888877664
Q ss_pred CccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 433 DQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 433 ~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
++++|+.||+|+|||+.+++.
T Consensus 272 ----~~~s~s~Dg~i~iwd~~tg~~ 292 (342)
T d2ovrb2 272 ----FVITSSDDGTVKLWDLKTGEF 292 (342)
T ss_dssp ----EEEEEETTSEEEEEETTTCCE
T ss_pred ----eeEEEcCCCEEEEEECCCCCE
Confidence 899999999999999998764
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.4e-29 Score=236.06 Aligned_cols=251 Identities=21% Similarity=0.316 Sum_probs=191.1
Q ss_pred ccccccCcccE-EEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEe
Q 012007 154 FSGFKSNSGLV-KAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKI 232 (473)
Q Consensus 154 ~~~~~~h~~~V-~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (473)
..++++|...| +|++| ++++|+||+.||+|+|||+.+++......
T Consensus 5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~-------------------------------- 50 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLS-------------------------------- 50 (355)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEE--------------------------------
T ss_pred cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEE--------------------------------
Confidence 45688998875 66666 56799999999999999998876544332
Q ss_pred eccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCc--eeEEEEcCCC-EEEEEeCCCcEEEEeCcccC
Q 012007 233 RHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDA--INSVVAGFDS-LVFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 233 ~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~--v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~ 309 (473)
+|.+.|.+++|+++ .+|++|+.|++|++|++...+........... .....+.+++ .+++++.|+.|++||++...
T Consensus 51 ~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~ 129 (355)
T d1nexb2 51 GHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129 (355)
T ss_dssp CCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC--
T ss_pred CCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCc
Confidence 49999999999985 58999999999999999998887766544433 3344455665 78889999999999876321
Q ss_pred CCc---------------------------------------------------------ceeeeeeeccCCccEEEEEE
Q 012007 310 KGT---------------------------------------------------------KHCLAQVLLKHENAVTALAV 332 (473)
Q Consensus 310 ~~~---------------------------------------------------------~~~~~~~~~~~~~~v~~l~~ 332 (473)
... ..........+...+.++.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 209 (355)
T d1nexb2 130 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY 209 (355)
T ss_dssp ---------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred eeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccc
Confidence 100 00011223456677888999
Q ss_pred ccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCc
Q 012007 333 NQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGP 412 (473)
Q Consensus 333 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 412 (473)
++++.++++++.|+.|++||++++.. ...+.+|...+.++++++++|++|+.||.|++||+.+. . ..+..|...
T Consensus 210 ~~~~~~~~~~~~d~~i~i~d~~~~~~-~~~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~---~--~~~~~~~~~ 283 (355)
T d1nexb2 210 DHERKRCISASMDTTIRIWDLENGEL-MYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDY---S--RKFSYHHTN 283 (355)
T ss_dssp ETTTTEEEEEETTSCEEEEETTTCCE-EEEECCCSSCCCEEEECSSEEEEECTTSEEEEEETTTC---C--EEEEEECTT
T ss_pred cccceeeecccccceEEeeecccccc-ccccccccccccccccccceeeeeeccccccccccccc---c--eecccccCC
Confidence 99999999999999999999987644 45678899999999999999999999999999999873 2 223445566
Q ss_pred eeEEE-EecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCc
Q 012007 413 VKCLA-VEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDL 459 (473)
Q Consensus 413 V~~l~-~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~ 459 (473)
+.++. +++++. +|++| .||.|+|||+.+++...
T Consensus 284 ~~~~~~~~~~~~-------------~l~~g-~d~~i~vwd~~tg~~~~ 317 (355)
T d1nexb2 284 LSAITTFYVSDN-------------ILVSG-SENQFNIYNLRSGKLVH 317 (355)
T ss_dssp CCCCCEEEECSS-------------EEEEE-ETTEEEEEETTTCCBCC
T ss_pred ceEEEEEcCCCC-------------EEEEE-eCCEEEEEECCCCCEEE
Confidence 66654 455554 55555 58999999999887653
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.5e-29 Score=234.11 Aligned_cols=290 Identities=12% Similarity=0.091 Sum_probs=207.3
Q ss_pred ceeeeeeecccEEEEEe--cCCEEEEeeCCCcEEEeeCCc-----cccccccCcccEEEEEEeCCC-CEEEEEeCCCeEE
Q 012007 115 LIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK-----EFSGFKSNSGLVKAIIISGDS-NKIFTGHQDGKIR 186 (473)
Q Consensus 115 ~~~~l~~h~~~V~~~~~--~g~~l~tg~~dg~i~vwd~~~-----~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~ 186 (473)
++..+.+|++.|.+++| ++++||+|+.||+|+|||+.. .+....+|.++|.+++|++++ .+|++|+.||.|+
T Consensus 3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~ 82 (342)
T d1yfqa_ 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence 56778899999998886 589999999999999998642 223344699999999999864 5899999999999
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD 266 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~ 266 (473)
+|++........... .+........+.++...+++++.|+++++||++.
T Consensus 83 ~w~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~ 131 (342)
T d1yfqa_ 83 KVDLIGSPSFQALTN-------------------------------NEANLGICRICKYGDDKLIAASWDGLIEVIDPRN 131 (342)
T ss_dssp EECSSSSSSEEECBS-------------------------------CCCCSCEEEEEEETTTEEEEEETTSEEEEECHHH
T ss_pred eeecccccccccccc-------------------------------cccccccccccccccccccccccccccceeeccc
Confidence 999987764433221 1334445556667889999999999999999865
Q ss_pred Ceee----EEeecC--CCceeEEEEcCC-CEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc-CCCE
Q 012007 267 CKCL----ESINAH--DDAINSVVAGFD-SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ-ESAV 338 (473)
Q Consensus 267 ~~~~----~~~~~~--~~~v~~l~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~ 338 (473)
+... .....+ ........+.+. ..+++++.|+.|++||++...... .......+...+.+..+.+ ++..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 208 (342)
T d1yfqa_ 132 YGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN---GTIEESGLKYQIRDVALLPKEQEG 208 (342)
T ss_dssp HTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCC---CEEEECSCSSCEEEEEECSGGGCE
T ss_pred cccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccc---eeeeecccccceeeeEeecCCCCE
Confidence 4322 222222 222334444444 489999999999999997543211 1222334445566666554 6789
Q ss_pred EEEeCCCCcEEEEecCCccccc--------------ceeecCcceEEEE--EecCCEEEEEeCCCcEEEEecCCCCceeE
Q 012007 339 VYCGSSDGLVNFWECEKHLSHG--------------GVLRGHKMAVLCL--AAAGNLVFSGSADRNICLWRREESGAHSC 402 (473)
Q Consensus 339 l~~~~~dg~i~iwd~~~~~~~~--------------~~~~~~~~~v~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 402 (473)
+++++.||.+.+|+........ ....+|...+.++ +|++++|++|+.||.|++||+.+ .+.
T Consensus 209 ~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~---~~~ 285 (342)
T d1yfqa_ 209 YACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT---RKK 285 (342)
T ss_dssp EEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT---TEE
T ss_pred EEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCC---CcE
Confidence 9999999999999876422111 1123455556555 56799999999999999999998 566
Q ss_pred EEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 403 LAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 403 ~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
+..+..+ ..+..++|++++. +|++++.|+++++|.....
T Consensus 286 l~~~~~~-~~~~~~~~s~~~~-------------~l~~a~sdd~~~~~~~~~~ 324 (342)
T d1yfqa_ 286 IKNFAKF-NEDSVVKIACSDN-------------ILCLATSDDTFKTNAAIDQ 324 (342)
T ss_dssp EEECCCC-SSSEEEEEEECSS-------------EEEEEEECTHHHHCSSSCT
T ss_pred EEEecCC-CCCEEEEEEeCCC-------------EEEEEEcCCcEEEeeeeCC
Confidence 7776543 3456678888887 8888888999999876543
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=5e-29 Score=230.65 Aligned_cols=240 Identities=13% Similarity=0.124 Sum_probs=185.8
Q ss_pred eeeeeeec-ccEEEEEe----cCCEEEEeeCCCcEEEeeCCcc--c--------cccccCcccEEEEEEeCCCCEEEEEe
Q 012007 116 IGSIVRKE-GHIYSLAA----SGDLLYTGSDSKNIRVWKNLKE--F--------SGFKSNSGLVKAIIISGDSNKIFTGH 180 (473)
Q Consensus 116 ~~~l~~h~-~~V~~~~~----~g~~l~tg~~dg~i~vwd~~~~--~--------~~~~~h~~~V~~l~~s~~~~~l~s~~ 180 (473)
+..+.+|. ..|++++| +|.+||+|+.||+|+|||.... . ..+..|.++|.+++|++++++|++++
T Consensus 55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 134 (325)
T d1pgua1 55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 134 (325)
T ss_dssp EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceee
Confidence 45566775 56888887 3679999999999999986421 1 22456889999999999999998876
Q ss_pred C--CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCE-EEEEeCCC
Q 012007 181 Q--DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGL-LYSGSWDK 257 (473)
Q Consensus 181 ~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~s~s~dg 257 (473)
. ++.+++|+.++++...... +|...|.+++|+|++++ +++++.|+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~--------------------------------~h~~~v~~~~~~~~~~~~~~~~~~d~ 182 (325)
T d1pgua1 135 EGRDNFGVFISWDSGNSLGEVS--------------------------------GHSQRINACHLKQSRPMRSMTVGDDG 182 (325)
T ss_dssp CCSSCSEEEEETTTCCEEEECC--------------------------------SCSSCEEEEEECSSSSCEEEEEETTT
T ss_pred ccccceEEEEeecccccceeee--------------------------------ecccccccccccccccceEEEeeccc
Confidence 5 6789999998776433322 48999999999998764 77899999
Q ss_pred CEEEEEcCCCeeeEEee---cCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEE
Q 012007 258 TLKVWRISDCKCLESIN---AHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAV 332 (473)
Q Consensus 258 ~v~vwd~~~~~~~~~~~---~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 332 (473)
.|++||+...+....+. .|...|.+++|+|++ ++++++.||.|++||++... ....+..|...+..+.|
T Consensus 183 ~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~------~~~~l~~~~~~v~~~~~ 256 (325)
T d1pgua1 183 SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE------FLKYIEDDQEPVQGGIF 256 (325)
T ss_dssp EEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC------EEEECCBTTBCCCSCEE
T ss_pred ccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccc------cccccccccccccccee
Confidence 99999999887766553 567789999999974 88999999999999987432 34556677777665555
Q ss_pred c---cCCCEEEEeCCCCcEEEEecCCcccccceeecCc----ceEEEEEec-CCEEEEEeCCCcEEEEec
Q 012007 333 N---QESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHK----MAVLCLAAA-GNLVFSGSADRNICLWRR 394 (473)
Q Consensus 333 ~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~v~~~~~~-~~~l~s~~~dg~i~iwd~ 394 (473)
+ +++++|++++.|+.|+|||++++.... .+..|. ....++.+. +.+|++|+.||.|++||+
T Consensus 257 s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 257 ALSWLDSQKFATVGADATIRVWDVTTSKCVQ-KWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEESSSSEEEEEETTSEEEEEETTTTEEEE-EEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred eeeccCCCEEEEEeCCCeEEEEECCCCCEEE-EEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 5 688999999999999999998765443 333332 223455554 568999999999999996
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4.6e-29 Score=230.83 Aligned_cols=264 Identities=13% Similarity=0.168 Sum_probs=191.2
Q ss_pred cccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEe
Q 012007 153 EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKI 232 (473)
Q Consensus 153 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (473)
.+...++|+..|++|+|+|++++||+|+.||+|+|||+.......... ...
T Consensus 3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~-----------------------------~~~ 53 (342)
T d1yfqa_ 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLL-----------------------------QSL 53 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEE-----------------------------EEE
T ss_pred eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEE-----------------------------Eec
Confidence 455678899999999999999999999999999999997664322211 122
Q ss_pred eccCCeeEEEEcCC-CCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEE-EEc-CCCEEEEEeCCCcEEEEeCcccC
Q 012007 233 RHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV-VAG-FDSLVFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 233 ~~~~~v~~l~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l-~~~-~~~~l~s~~~dg~i~vwd~~~~~ 309 (473)
+|..+|.+++|+++ +.+|++|+.|+.|++|++...........+....... .+. ....+++++.++.+++||++...
T Consensus 54 ~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~ 133 (342)
T d1yfqa_ 54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG 133 (342)
T ss_dssp ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHT
T ss_pred CCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccc
Confidence 49999999999986 4589999999999999999887777666554444333 333 34599999999999999987544
Q ss_pred CCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccce--eecCcceEEEEE---ecCCEEEEEe
Q 012007 310 KGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV--LRGHKMAVLCLA---AAGNLVFSGS 384 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~~~---~~~~~l~s~~ 384 (473)
....................+.+.+.+..+++++.|+.|++||+......... ...+.....+.. .++..+++++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 213 (342)
T d1yfqa_ 134 DGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS 213 (342)
T ss_dssp TBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE
T ss_pred cceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeec
Confidence 32211111111222334456677888899999999999999999765443222 222233333333 3588999999
Q ss_pred CCCcEEEEecCCCCc------eeEEE------EecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 385 ADRNICLWRREESGA------HSCLA------VLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 385 ~dg~i~iwd~~~~~~------~~~~~------~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
.||.+.+|+...... ..... ...+|...|++|+|+|++. +|+||+.||.|+|||+
T Consensus 214 ~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-------------~lasg~~Dg~v~vWD~ 280 (342)
T d1yfqa_ 214 IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-------------FLYTAGSDGIISCWNL 280 (342)
T ss_dssp TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-------------CEEEEETTSCEEEEET
T ss_pred CCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCcc-------------EEEEECCCCEEEEEEC
Confidence 999999999864211 11111 1235677899999999998 8999999999999999
Q ss_pred CCCCCC
Q 012007 453 SEHAPD 458 (473)
Q Consensus 453 ~~~~~~ 458 (473)
.+++..
T Consensus 281 ~~~~~l 286 (342)
T d1yfqa_ 281 QTRKKI 286 (342)
T ss_dssp TTTEEE
T ss_pred CCCcEE
Confidence 887643
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.97 E-value=6.3e-29 Score=232.65 Aligned_cols=274 Identities=11% Similarity=0.020 Sum_probs=207.9
Q ss_pred EEEEEe-cCCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCC--eEEEEeCCCCCeeeEEeec
Q 012007 126 IYSLAA-SGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG--KIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 126 V~~~~~-~g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~ 202 (473)
...++| ||+++|+++. |.|++||.........+|...|.+++|+|||++|++++.+. .|++||+.+++.....
T Consensus 7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~--- 82 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE--- 82 (360)
T ss_dssp EEEEEECGGGCEEEEET-TEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC---
T ss_pred cccccCCCCCEEEEEEC-CeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEee---
Confidence 457999 8999999875 79999998754434447999999999999999998877653 7999999887643221
Q ss_pred cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeE
Q 012007 203 SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINS 282 (473)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~ 282 (473)
.|...|.+++|+|++++|++++.++.+++|++.+++....+..|...+.+
T Consensus 83 ------------------------------~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (360)
T d1k32a3 83 ------------------------------ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITD 132 (360)
T ss_dssp ------------------------------CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCC
T ss_pred ------------------------------CCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccc
Confidence 38899999999999999999999999999999999999999999999999
Q ss_pred EEEcCCC-EEEEE----------eCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEE
Q 012007 283 VVAGFDS-LVFTG----------SADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFW 351 (473)
Q Consensus 283 l~~~~~~-~l~s~----------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iw 351 (473)
++|+|++ +|+.+ ..++.+++||+..+. ......+...+..++|+|+|++|++++.++.+.+|
T Consensus 133 ~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~-------~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~ 205 (360)
T d1k32a3 133 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-------IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSP 205 (360)
T ss_dssp EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-------EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEE
T ss_pred hhhccceeeeeeeccccccceeeccccceeeeccccCc-------eeeecccccccccccccCCCCEEEEEeCCCceEcc
Confidence 9999998 55533 335568999986321 23445567788999999999999999999999999
Q ss_pred ecCCccccc------cee------------------------------------ecCcceEEEEEec-------------
Q 012007 352 ECEKHLSHG------GVL------------------------------------RGHKMAVLCLAAA------------- 376 (473)
Q Consensus 352 d~~~~~~~~------~~~------------------------------------~~~~~~v~~~~~~------------- 376 (473)
|........ ... .........+...
T Consensus 206 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (360)
T d1k32a3 206 DRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHG 285 (360)
T ss_dssp CSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCC
T ss_pred cccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecC
Confidence 854211000 000 0000111111111
Q ss_pred --CCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 377 --GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 377 --~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
+.++++++.++.|++||+.+.. . . .|.+.|.+++|+||++ .|++++.||.|++|++..
T Consensus 286 ~~~~~~~~~~~~~~i~~~d~~~~~---~-~---~~~~~v~~~~~SpDG~-------------~l~~~~~Dg~i~v~d~~~ 345 (360)
T d1k32a3 286 EFAAYYQGAPEKGVLLKYDVKTRK---V-T---EVKNNLTDLRLSADRK-------------TVMVRKDDGKIYTFPLEK 345 (360)
T ss_dssp SHHHHHHCCCCCEEEEEEETTTCC---E-E---EEEEEEEEEEECTTSC-------------EEEEEETTSCEEEEESSC
T ss_pred CCeeEEEecCCCCEEEEEECCCCe---E-E---EecCCcCEEEECCCCC-------------EEEEEECCCeEEEEECCC
Confidence 1245566778899999998732 2 2 2345699999999999 899999999999999998
Q ss_pred CCCCcc
Q 012007 455 HAPDLK 460 (473)
Q Consensus 455 ~~~~~~ 460 (473)
++....
T Consensus 346 ~~~~~~ 351 (360)
T d1k32a3 346 PEDERT 351 (360)
T ss_dssp TTSCEE
T ss_pred CCcceE
Confidence 865443
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=4.9e-28 Score=230.13 Aligned_cols=262 Identities=14% Similarity=0.200 Sum_probs=179.5
Q ss_pred cccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeec
Q 012007 155 SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRH 234 (473)
Q Consensus 155 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
...++|.+.|.+|++++ ++|+||+.|+.|+|||....+...... .......|
T Consensus 8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~--------------------------~~~~~~~~ 59 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKD--------------------------KSYSHFVH 59 (393)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGG--------------------------GEEEEECC
T ss_pred ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccc--------------------------eeEeeeec
Confidence 45678999999999865 599999999999999976654211000 00000012
Q ss_pred cCCe------eEEEEcC-CCCEEEEEeCCCCEEEEEcCCCeeeEE-----e-----ecCCCceeEEEEcCC------CEE
Q 012007 235 YDAV------SCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLES-----I-----NAHDDAINSVVAGFD------SLV 291 (473)
Q Consensus 235 ~~~v------~~l~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~-----~-----~~~~~~v~~l~~~~~------~~l 291 (473)
...+ ..+.... ++.++++++.||.|++|++........ . ..+...+..+.+.++ .++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (393)
T d1sq9a_ 60 KSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRL 139 (393)
T ss_dssp TTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEE
T ss_pred cCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEE
Confidence 2222 2222222 345788999999999999864322111 1 123455667777654 278
Q ss_pred EEEeCCCcEEEEeCcccCCC---------c---ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccc
Q 012007 292 FTGSADGTVKVWRRELQGKG---------T---KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSH 359 (473)
Q Consensus 292 ~s~~~dg~i~vwd~~~~~~~---------~---~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 359 (473)
++++.||.+++|++...... . ..........+...+++++|+|++ +|++|+.||.|++||+++....
T Consensus 140 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~ 218 (393)
T d1sq9a_ 140 VATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPL 218 (393)
T ss_dssp EEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEE
T ss_pred EEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccc
Confidence 89999999999998532210 0 011122233455668999999997 8899999999999999875432
Q ss_pred -----cceeecCcceEEEEE--ecCCEEEEEeCCCc---EEEEecCCCCceeE----------EEEecCCCCceeEEEEe
Q 012007 360 -----GGVLRGHKMAVLCLA--AAGNLVFSGSADRN---ICLWRREESGAHSC----------LAVLTGHTGPVKCLAVE 419 (473)
Q Consensus 360 -----~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~---i~iwd~~~~~~~~~----------~~~~~~h~~~V~~l~~~ 419 (473)
...+.+|...|.+++ |+|++|++|+.|++ |++||+.++..... ...+.+|.+.|++|+|+
T Consensus 219 ~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fs 298 (393)
T d1sq9a_ 219 YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 298 (393)
T ss_dssp EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEEC
T ss_pred cccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccC
Confidence 234567888887765 57999999999874 99999988432111 22335899999999999
Q ss_pred cCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 420 EDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
|+++ +|+|||.|++|+|||+.+++..
T Consensus 299 pd~~-------------~l~S~s~D~~v~vWd~~~g~~~ 324 (393)
T d1sq9a_ 299 DSGE-------------TLCSAGWDGKLRFWDVKTKERI 324 (393)
T ss_dssp SSSS-------------EEEEEETTSEEEEEETTTTEEE
T ss_pred CCCC-------------eeEEECCCCEEEEEECCCCCEE
Confidence 9998 8999999999999999987644
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.2e-26 Score=209.84 Aligned_cols=244 Identities=28% Similarity=0.480 Sum_probs=196.4
Q ss_pred ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeE
Q 012007 152 KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231 (473)
Q Consensus 152 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (473)
+.+..+..|...|+|+.| |+++||||+.||+|+|||+.+++......
T Consensus 6 ~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~------------------------------- 52 (293)
T d1p22a2 6 QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILT------------------------------- 52 (293)
T ss_dssp CCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEEC-------------------------------
T ss_pred EEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEe-------------------------------
Confidence 344556678889998765 78899999999999999998877554332
Q ss_pred eeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCC
Q 012007 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
+|...|.+++| ++++|++|+.|+.|++|++..+........+..... ......+.++++..++.+.+|+.....
T Consensus 53 -~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 126 (293)
T d1p22a2 53 -GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL-HLRFNNGMMVTCSKDRSIAVWDMASPT-- 126 (293)
T ss_dssp -CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE-EEECCTTEEEEEETTSCEEEEECSSSS--
T ss_pred -cCCCCEeeeec--ccceeecccccccccccccccccccccccccccccc-cccccccceeecccccceeEeeccccc--
Confidence 49999999987 568999999999999999999888777765544433 334455689999999999999987432
Q ss_pred cceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEE
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICL 391 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~i 391 (473)
..........|...+..+.+.+ ..+++++.|+.|++||.++... ...+.++...+..+.+++.++++++.||.|++
T Consensus 127 -~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i 202 (293)
T d1p22a2 127 -DITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEF-VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRL 202 (293)
T ss_dssp -CCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEEETTEEEEEETTSCEEE
T ss_pred -cccccccccccccccccceecc--cccccccCCCceeeecCCCCcE-EEEEcccccccccccCCCCeEEEecCCCEEEE
Confidence 2333455677888888887764 4678889999999999987544 35677888999999999999999999999999
Q ss_pred EecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 392 WRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 392 wd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
||+.+ ...+..+.+|...|..+. ++.. +|++|+.||.|++||+....
T Consensus 203 ~d~~~---~~~~~~~~~~~~~v~~~~--~~~~-------------~l~sg~~dg~i~iwd~~~~~ 249 (293)
T d1p22a2 203 WDIEC---GACLRVLEGHEELVRCIR--FDNK-------------RIVSGAYDGKIKVWDLVAAL 249 (293)
T ss_dssp EETTT---CCEEEEECCCSSCEEEEE--CCSS-------------EEEEEETTSCEEEEEHHHHT
T ss_pred Eeccc---ceeeeeecccceeeeecc--ccce-------------EEEEEcCCCEEEEEECCCCc
Confidence 99998 577888889988887654 4444 89999999999999987543
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=7.8e-27 Score=211.61 Aligned_cols=247 Identities=15% Similarity=0.181 Sum_probs=180.7
Q ss_pred ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeE
Q 012007 152 KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231 (473)
Q Consensus 152 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (473)
+.++.+++|.++|++|+|+| |+||+.||+|++||+.+...
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~------------------------------------ 43 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ------------------------------------ 43 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEEC------------------------------------
T ss_pred ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCCC------------------------------------
Confidence 45678899999999999986 99999999999999864321
Q ss_pred eeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCC
Q 012007 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKG 311 (473)
Q Consensus 232 ~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 311 (473)
+|...|.+++++++ ..+++++.|++|++|++...+ ....+.++.+.+++.++..+.++.+.+|+.....
T Consensus 44 -~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 112 (287)
T d1pgua2 44 -DHSNLIVSLDNSKA-QEYSSISWDDTLKVNGITKHE-------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGD-- 112 (287)
T ss_dssp -CCCSCEEEEECCST-TCCEEEETTTEEEETTEEEEE-------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCC--
T ss_pred -CCCCCEEEEEecCC-CeEEEEeeccccccccccccc-------cccceeeeeeccCCceEEEeecccceeeecccee--
Confidence 38999999999875 468999999999999975432 3345778888999977777888889999876332
Q ss_pred cceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC-cEEEEecCCcccccceeecCcceEEEE--EecCCEEEEEeCCCc
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG-LVNFWECEKHLSHGGVLRGHKMAVLCL--AAAGNLVFSGSADRN 388 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~~~dg~ 388 (473)
....+. +...+ .++++++..+++++.++ .|++|++............|...+.++ ++++.+|++|+.||.
T Consensus 113 ----~~~~~~-~~~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 185 (287)
T d1pgua2 113 ----IIKSVR-LNSPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK 185 (287)
T ss_dssp ----EEEEEE-CSSCE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ----eeeecc-cccee--eeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccccccc
Confidence 122222 22333 45667777887777765 799999876544433444566666555 567999999999999
Q ss_pred EEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCCccC
Q 012007 389 ICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKG 461 (473)
Q Consensus 389 i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~~~~ 461 (473)
|++||+.+. ......+.+|...|++++|+|.+...... .....+|++|+.|++|+||++..+......
T Consensus 186 i~i~d~~~~--~~~~~~~~~h~~~v~~~~~~p~~~~~~~~---~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~ 253 (287)
T d1pgua2 186 ILLYDLQSR--EVKTSRWAFRTSKINAISWKPAEKGANEE---EIEEDLVATGSLDTNIFIYSVKRPMKIIKA 253 (287)
T ss_dssp EEEEETTTT--EEEECCSCCCSSCEEEEEECCCC---------CCSCCEEEEEETTSCEEEEESSCTTCCEEE
T ss_pred ccceeeccc--ccccccccccccccceeeecccccccccc---cCCCCeeEeecCCCeEEEEECCCCCeEEEE
Confidence 999999873 22334577899999999999976421111 111227999999999999999876555443
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.93 E-value=1.4e-24 Score=208.27 Aligned_cols=282 Identities=10% Similarity=0.038 Sum_probs=191.1
Q ss_pred EEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEe
Q 012007 135 LLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVK 212 (473)
Q Consensus 135 ~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 212 (473)
++++++.||+|+|||.. +.+..+..|. .+..++|+|||++|++++.||.|++||+.+++......+...
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~-------- 104 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG-------- 104 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC--------
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC--------
Confidence 56888899999999976 5566777664 589999999999999999999999999998875544332211
Q ss_pred ecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE-eCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--
Q 012007 213 SSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-- 289 (473)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-- 289 (473)
.+|...+.+++|+|||++|+++ ..++.+.+||..+++++..+..|...+..+.+.+++
T Consensus 105 -------------------~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (426)
T d1hzua2 105 -------------------IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRV 165 (426)
T ss_dssp -------------------SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCE
T ss_pred -------------------CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCce
Confidence 1266667778889999987555 578999999999999988887776555544444443
Q ss_pred EEEEEeCCCcEEEEeCcccCCC------cceeeeeeeccCCccEEEEEEccCCCEEEEeC-CCCcEEEEecCCcc-----
Q 012007 290 LVFTGSADGTVKVWRRELQGKG------TKHCLAQVLLKHENAVTALAVNQESAVVYCGS-SDGLVNFWECEKHL----- 357 (473)
Q Consensus 290 ~l~s~~~dg~i~vwd~~~~~~~------~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~----- 357 (473)
..++.+.|+...++........ ...........+...+..+.|+|++++++++. .+..+.+++..+..
T Consensus 166 ~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~ 245 (426)
T d1hzua2 166 AAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALV 245 (426)
T ss_dssp EEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred eEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEe
Confidence 3344444444444332211100 11112233446677788999999998777664 34456666543211
Q ss_pred ------------------------------------------------cccceeecCcceE--EEEEecCCEEEE-----
Q 012007 358 ------------------------------------------------SHGGVLRGHKMAV--LCLAAAGNLVFS----- 382 (473)
Q Consensus 358 ------------------------------------------------~~~~~~~~~~~~v--~~~~~~~~~l~s----- 382 (473)
.....+.+|...+ .+++|++++|++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~ 325 (426)
T d1hzua2 246 DVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFN 325 (426)
T ss_dssp ECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTC
T ss_pred ccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCC
Confidence 1112234555444 556778999994
Q ss_pred --EeCCCcEEEEecCCCCceeEEE------EecCCCCceeEEEEecCCCCCcccccCCCccEEEEEe----eCCCcEEEE
Q 012007 383 --GSADRNICLWRREESGAHSCLA------VLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG----SLDKSVKVW 450 (473)
Q Consensus 383 --~~~dg~i~iwd~~~~~~~~~~~------~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~----s~Dg~v~iW 450 (473)
++.|++|+|||+.++.....+. .+..|...|.+++|+||++. +++++ +.||.|+||
T Consensus 326 ~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~------------i~vs~~~~~~~~~~i~v~ 393 (426)
T d1hzua2 326 PDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDE------------VWFSVWNGKNDSSALVVV 393 (426)
T ss_dssp SSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSE------------EEEEECCCTTSCCEEEEE
T ss_pred CCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCE------------EEEEEecCCCCCCeEEEE
Confidence 5568899999998854333322 23356677999999999983 44553 468899999
Q ss_pred EcCCCC
Q 012007 451 RVSEHA 456 (473)
Q Consensus 451 ~i~~~~ 456 (473)
|..+.+
T Consensus 394 D~~T~k 399 (426)
T d1hzua2 394 DDKTLK 399 (426)
T ss_dssp ETTTTE
T ss_pred ECCCCe
Confidence 998875
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.91 E-value=8.9e-22 Score=178.69 Aligned_cols=262 Identities=14% Similarity=0.137 Sum_probs=188.8
Q ss_pred EEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEE-EEeCCCeEEEEeCCCCCeeeEEeeccccccceeEee
Q 012007 137 YTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIF-TGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKS 213 (473)
Q Consensus 137 ~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 213 (473)
++++.|++|.|||.. +.+..+.. ...+..++|+|||++|+ +++.++.|++||+.+++......
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~------------- 71 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP------------- 71 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-------------
T ss_pred EEECCCCEEEEEECCCCeEEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee-------------
Confidence 456789999999975 33444443 35578999999999885 56678999999999887544332
Q ss_pred cCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEE-eCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC--E
Q 012007 214 SVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--L 290 (473)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~ 290 (473)
....+..+.|++++..++++ ..++.+.+|+..+++....+..+ ....++.+++++ .
T Consensus 72 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~ 130 (301)
T d1l0qa2 72 --------------------AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKL 130 (301)
T ss_dssp --------------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEE
T ss_pred --------------------ccccccccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCee
Confidence 23456789999999866654 56678999999999998888755 456788999988 4
Q ss_pred EEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC-CcEEEEecCCcccccceeecCcc-
Q 012007 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD-GLVNFWECEKHLSHGGVLRGHKM- 368 (473)
Q Consensus 291 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~- 368 (473)
++++..++.+.+|+..... .... ..+...+..++++|++..++++..+ +.+.+|+....... .....+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 202 (301)
T d1l0qa2 131 YVTNNGDKTVSVINTVTKA------VINT-VSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI-DTVKVEAAP 202 (301)
T ss_dssp EEEETTTTEEEEEETTTTE------EEEE-EECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-EEEECSSEE
T ss_pred eeeeccccceeeeeccccc------eeee-cccCCCceEEEeeccccceeeecccccccccccccceeee-ecccccCCc
Confidence 5677778899999986322 1222 2344567899999999888777665 56667776654332 23333322
Q ss_pred eEEEEEecCCEEEEEeC---CCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCC
Q 012007 369 AVLCLAAAGNLVFSGSA---DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDK 445 (473)
Q Consensus 369 ~v~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg 445 (473)
.-..+.++++.++.+.. ++.|++||+.+ .+.+..+..+ ..+.+++|+|+++. ++++++.|+
T Consensus 203 ~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t---~~~~~~~~~~-~~~~~va~spdg~~------------l~va~~~~~ 266 (301)
T d1l0qa2 203 SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT---NKITARIPVG-PDPAGIAVTPDGKK------------VYVALSFCN 266 (301)
T ss_dssp EEEEECTTSSEEEEEEECSSCCEEEEEETTT---TEEEEEEECC-SSEEEEEECTTSSE------------EEEEETTTT
T ss_pred ceeeccccccccccccccceeeeeeeeecCC---CeEEEEEcCC-CCEEEEEEeCCCCE------------EEEEECCCC
Confidence 23456677887776543 46899999988 4566666544 45799999999983 457888899
Q ss_pred cEEEEEcCCCCC
Q 012007 446 SVKVWRVSEHAP 457 (473)
Q Consensus 446 ~v~iW~i~~~~~ 457 (473)
+|++||+.+++.
T Consensus 267 ~i~v~D~~t~~~ 278 (301)
T d1l0qa2 267 TVSVIDTATNTI 278 (301)
T ss_dssp EEEEEETTTTEE
T ss_pred eEEEEECCCCeE
Confidence 999999988753
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.91 E-value=5e-23 Score=197.16 Aligned_cols=188 Identities=9% Similarity=0.045 Sum_probs=141.1
Q ss_pred EEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEe
Q 012007 135 LLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVK 212 (473)
Q Consensus 135 ~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 212 (473)
++++.+.||+|.|||.. +.+..+..+ ..+..++|+|||++|++++.||.|++||+.+++......+...
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~-------- 104 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-------- 104 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC--------
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecC--------
Confidence 46899999999999965 566777766 4699999999999999999999999999988765433332211
Q ss_pred ecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEE-EEEeCCCCEEEEEcCCCeeeEEeecC-----------CCce
Q 012007 213 SSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLL-YSGSWDKTLKVWRISDCKCLESINAH-----------DDAI 280 (473)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~s~s~dg~v~vwd~~~~~~~~~~~~~-----------~~~v 280 (473)
.+|...+.+..|+|||++| ++++.+++|++||..+++++..+..+ ....
T Consensus 105 -------------------~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (432)
T d1qksa2 105 -------------------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRV 165 (432)
T ss_dssp -------------------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCE
T ss_pred -------------------CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCce
Confidence 0255566667788999986 67788999999999999998877644 3345
Q ss_pred eEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC-CCcEEEEecCC
Q 012007 281 NSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-DGLVNFWECEK 355 (473)
Q Consensus 281 ~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~iwd~~~ 355 (473)
..+.+++++ ++++...++.|.+||..... ........+...+..++|+|+|+++++++. ++.+.++|..+
T Consensus 166 ~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~-----~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~ 238 (432)
T d1qksa2 166 AAILASHYRPEFIVNVKETGKILLVDYTDLN-----NLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 238 (432)
T ss_dssp EEEEECSSSSEEEEEETTTTEEEEEETTCSS-----EEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred eEEEECCCCCEEEEEEccCCeEEEEEccCCC-----cceEEEEcccCccccceECCCCCEEEEeccccceEEEeeccc
Confidence 667888887 56777888999999986322 122223345667899999999998777655 45677887654
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.91 E-value=1.8e-23 Score=195.04 Aligned_cols=243 Identities=10% Similarity=0.087 Sum_probs=175.0
Q ss_pred eecccEEEEEe--cCCEEEEeeCCC--cEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCe
Q 012007 121 RKEGHIYSLAA--SGDLLYTGSDSK--NIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNA 195 (473)
Q Consensus 121 ~h~~~V~~~~~--~g~~l~tg~~dg--~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 195 (473)
+|.+.|.+++| ||++|++++.+. .|++||.. .....+..|...|.+++|+|++++|++++.++.+++|++.+++.
T Consensus 40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 119 (360)
T d1k32a3 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP 119 (360)
T ss_dssp SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecccccccceeccccccccccccccce
Confidence 68899988876 588888776543 79999976 45667888999999999999999999999999999999988775
Q ss_pred eeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe----------CCCCEEEEEcC
Q 012007 196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS----------WDKTLKVWRIS 265 (473)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s----------~dg~v~vwd~~ 265 (473)
..... .|...+.+++|+|+|++|+.+. .++.+++||+.
T Consensus 120 ~~~~~--------------------------------~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~ 167 (360)
T d1k32a3 120 TVIER--------------------------------SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME 167 (360)
T ss_dssp EEEEE--------------------------------CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred eeeee--------------------------------cccccccchhhccceeeeeeeccccccceeeccccceeeeccc
Confidence 44332 2777889999999999998654 34569999999
Q ss_pred CCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCC---cceee-------------------------
Q 012007 266 DCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG---TKHCL------------------------- 316 (473)
Q Consensus 266 ~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~---~~~~~------------------------- 316 (473)
+++..... .+...+..+.|+|++ .|++++.++.+++||....... .....
T Consensus 168 ~~~~~~~~-~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 246 (360)
T d1k32a3 168 GRKIFAAT-TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGE 246 (360)
T ss_dssp TTEEEECS-CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCC
T ss_pred cCceeeec-ccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccc
Confidence 88765544 466778889999998 8899999999999986422100 00000
Q ss_pred ---------eeeeccCCccEEEEEEccCCC-------------EEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE
Q 012007 317 ---------AQVLLKHENAVTALAVNQESA-------------VVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA 374 (473)
Q Consensus 317 ---------~~~~~~~~~~v~~l~~~~~~~-------------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 374 (473)
...+.........+...+++. ++++++.++.|++||+.+.+.. .+.++ ..-.+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--~~~~~-v~~~~~S 323 (360)
T d1k32a3 247 YDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT--EVKNN-LTDLRLS 323 (360)
T ss_dssp CCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE--EEEEE-EEEEEEC
T ss_pred eeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE--EecCC-cCEEEEC
Confidence 000011112233344333322 3455667889999999875332 22222 2335677
Q ss_pred ecCCEEEEEeCCCcEEEEecCCCCc
Q 012007 375 AAGNLVFSGSADRNICLWRREESGA 399 (473)
Q Consensus 375 ~~~~~l~s~~~dg~i~iwd~~~~~~ 399 (473)
+||++|++++.||.|++||+..++.
T Consensus 324 pDG~~l~~~~~Dg~i~v~d~~~~~~ 348 (360)
T d1k32a3 324 ADRKTVMVRKDDGKIYTFPLEKPED 348 (360)
T ss_dssp TTSCEEEEEETTSCEEEEESSCTTS
T ss_pred CCCCEEEEEECCCeEEEEECCCCCc
Confidence 8999999999999999999998543
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.89 E-value=9.2e-22 Score=181.45 Aligned_cols=275 Identities=8% Similarity=-0.002 Sum_probs=186.5
Q ss_pred CEEEEeeCCCcEEEeeCC--cccccccc--CcccEEEEEEeCCCCEEE-EEeCCCeEEEEeCCCCCeeeEEeeccccccc
Q 012007 134 DLLYTGSDSKNIRVWKNL--KEFSGFKS--NSGLVKAIIISGDSNKIF-TGHQDGKIRIWKVSRKNASVHKRVGSLPTFK 208 (473)
Q Consensus 134 ~~l~tg~~dg~i~vwd~~--~~~~~~~~--h~~~V~~l~~s~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 208 (473)
+|+++++.|++|+|||.. +.+..+.. +...+.+++|+|||++|+ +++.++.|.+||+.+++...........
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~--- 78 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE--- 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT---
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCc---
Confidence 589999999999999976 33444443 445688999999999875 5677999999999998876554432111
Q ss_pred eeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe------------CCCCEEEEEcCCCeeeEEeecC
Q 012007 209 DYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS------------WDKTLKVWRISDCKCLESINAH 276 (473)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s------------~dg~v~vwd~~~~~~~~~~~~~ 276 (473)
.+...+..++|+|++++++++. .+..+.+||..+++.+..+..+
T Consensus 79 ------------------------~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 134 (337)
T d1pbyb_ 79 ------------------------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP 134 (337)
T ss_dssp ------------------------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC
T ss_pred ------------------------ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc
Confidence 1334456799999999998886 4678999999999998888754
Q ss_pred CCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeee---------------eeccCCc--cEEEEEEccCCCE
Q 012007 277 DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQ---------------VLLKHEN--AVTALAVNQESAV 338 (473)
Q Consensus 277 ~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------------~~~~~~~--~v~~l~~~~~~~~ 338 (473)
..+..+++++++ ++++++ +.+.+||.............. ....+.. .+.......+...
T Consensus 135 -~~~~~~~~s~dg~~l~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (337)
T d1pbyb_ 135 -RQITMLAWARDGSKLYGLG--RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDP 211 (337)
T ss_dssp -SSCCCEEECTTSSCEEEES--SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCT
T ss_pred -CCceEEEEcCCCCEEEEEc--CCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccce
Confidence 567889999998 666665 457789876432100000000 0000000 0111111222222
Q ss_pred EEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEE
Q 012007 339 VYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCL 416 (473)
Q Consensus 339 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l 416 (473)
+..+..++.+.+||..++.........+.....++. +++.+++.+ ++.|++||+.+ .+.+..+. +...+.++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~---~~~~~~~~-~~~~~~~~ 285 (337)
T d1pbyb_ 212 ADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK---NASIKRVP-LPHSYYSV 285 (337)
T ss_dssp TSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT---TEEEEEEE-CSSCCCEE
T ss_pred eeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCC---CcEEEEEc-CCCCEEEE
Confidence 233444566888888876555444555555555444 456777655 58899999998 45555553 45678999
Q ss_pred EEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 417 AVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
+|+|+++ +|++++.|+.|+|||+.+.+.
T Consensus 286 ~~s~dG~-------------~l~v~~~~~~i~v~D~~t~~~ 313 (337)
T d1pbyb_ 286 NVSTDGS-------------TVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp EECTTSC-------------EEEEESBSSEEEEEETTTCCE
T ss_pred EECCCCC-------------EEEEEeCCCcEEEEECCCCcE
Confidence 9999999 899999999999999988654
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.87 E-value=1.1e-21 Score=181.72 Aligned_cols=278 Identities=9% Similarity=0.054 Sum_probs=186.1
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCC--ccccccc-cCcccEEEEEEeCCCCEEE-EEeCCCeEEEEeCCCCCeeeEEeecc
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNL--KEFSGFK-SNSGLVKAIIISGDSNKIF-TGHQDGKIRIWKVSRKNASVHKRVGS 203 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~-~h~~~V~~l~~s~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~ 203 (473)
+++.++++|++++.|++|.|||+. +.+..+. .|...+.+++|+|||++|+ ++..++.|++||+.+++.........
T Consensus 3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~ 82 (346)
T d1jmxb_ 3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS 82 (346)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccc
Confidence 456679999999999999999976 4445554 4566788999999999875 55578999999999987665444321
Q ss_pred ccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe------------CCCCEEEEEcCCCeeeE
Q 012007 204 LPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS------------WDKTLKVWRISDCKCLE 271 (473)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s------------~dg~v~vwd~~~~~~~~ 271 (473)
... .+...+..++|+|||+++++++ .++.+.+||..+++...
T Consensus 83 ~~~--------------------------~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 136 (346)
T d1jmxb_ 83 VPG--------------------------EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK 136 (346)
T ss_dssp STT--------------------------EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC
T ss_pred ccc--------------------------ccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeee
Confidence 110 1233466799999999998875 46779999998876654
Q ss_pred Eeec--CCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc---------------
Q 012007 272 SINA--HDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ--------------- 334 (473)
Q Consensus 272 ~~~~--~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--------------- 334 (473)
.+.. ....+..+.+.+++.+++.+ +.+.+|++..... ...+..+ .....+.++|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (346)
T d1jmxb_ 137 PVRTFPMPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKY------TVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEF 207 (346)
T ss_dssp CSEEEECCSSCCCEEECTTSCEEEES--SSEEEECTTTCCE------EEEECST-TCCCTTBCCCBCCCCCCCCCTTCEE
T ss_pred EEEeeeccCceEEEEecCCCEEEEeC--CcceEEEccCCCE------EEEEecC-CCccceEEeccccEEEEEecCCCce
Confidence 4432 23456667777787666543 5688898763321 1111111 1111122222
Q ss_pred -----------CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEE--ecCCEEEEEeCCCcEEEEecCCCCcee
Q 012007 335 -----------ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESGAHS 401 (473)
Q Consensus 335 -----------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~ 401 (473)
....++++..++.+.+||+.+..........+...+.... +++.+++.+. ++.|.+||..+ .+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~---~~ 283 (346)
T d1jmxb_ 208 SMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQ---RK 283 (346)
T ss_dssp EEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTT---TE
T ss_pred EeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCC---Cc
Confidence 2333444445567888888776655555556666555444 4566666665 45799999988 45
Q ss_pred EEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 402 CLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 402 ~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
.+..+. +...+.+++|+||++ +|++++.|+.|+|||+.+.+..
T Consensus 284 ~~~~~~-~~~~~~~va~s~DG~-------------~l~v~~~d~~v~v~D~~t~~~i 326 (346)
T d1jmxb_ 284 LIKAAN-LDHTYYCVAFDKKGD-------------KLYLGGTFNDLAVFNPDTLEKV 326 (346)
T ss_dssp EEEEEE-CSSCCCEEEECSSSS-------------CEEEESBSSEEEEEETTTTEEE
T ss_pred EEEEEc-CCCCEEEEEEcCCCC-------------EEEEEeCCCcEEEEECccCCEE
Confidence 555554 345799999999998 7899999999999999887643
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=1.1e-19 Score=167.30 Aligned_cols=280 Identities=13% Similarity=0.216 Sum_probs=186.8
Q ss_pred EEEEeeCCCcEEEeeCC--cccc--ccccCcccEEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCeeeEEeeccccccce
Q 012007 135 LLYTGSDSKNIRVWKNL--KEFS--GFKSNSGLVKAIIISGDSNKIFTGH-QDGKIRIWKVSRKNASVHKRVGSLPTFKD 209 (473)
Q Consensus 135 ~l~tg~~dg~i~vwd~~--~~~~--~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 209 (473)
.+++++.|++|+||++. ..+. ....|.+.|..|+|+|||++|++++ .|+.|++|++............
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~------- 78 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE------- 78 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE-------
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeee-------
Confidence 45777889999999864 2233 2336889999999999999996655 4899999999866533222110
Q ss_pred eEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC-CCCEEEEEcCCCeeeEE--eecCCCceeEEEEc
Q 012007 210 YVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISDCKCLES--INAHDDAINSVVAG 286 (473)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg~v~vwd~~~~~~~~~--~~~~~~~v~~l~~~ 286 (473)
..+...+..++|+|||++|++++. ++.|.+|+......... ...+...+.++.++
T Consensus 79 ----------------------~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s 136 (333)
T d1ri6a_ 79 ----------------------SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANIS 136 (333)
T ss_dssp ----------------------EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEEC
T ss_pred ----------------------cccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEee
Confidence 114456778999999999999985 66899999877655433 34566778889999
Q ss_pred CCC-EEEEE-eCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe-CCCCcEEEEecCCcccccce-
Q 012007 287 FDS-LVFTG-SADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG-SSDGLVNFWECEKHLSHGGV- 362 (473)
Q Consensus 287 ~~~-~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~- 362 (473)
+++ .++.+ ..+..|.+|+.........................++|++++.+++.. ...+...+|+..........
T Consensus 137 ~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 216 (333)
T d1ri6a_ 137 PDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV 216 (333)
T ss_dssp TTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEE
T ss_pred ecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeee
Confidence 998 44444 456679999976443222222222333445667889999999887654 45667788876532211111
Q ss_pred --e--------ecCcceEEEEEecCCEEEEE-eCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccC
Q 012007 363 --L--------RGHKMAVLCLAAAGNLVFSG-SADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQK 431 (473)
Q Consensus 363 --~--------~~~~~~v~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~ 431 (473)
. .........+++++++++.. ..++.+.+|++........+.....+...+.+++|+||++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~------- 289 (333)
T d1ri6a_ 217 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKY------- 289 (333)
T ss_dssp EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSE-------
T ss_pred eeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCE-------
Confidence 0 01112235567788866654 56788999998765444444444445566889999999982
Q ss_pred CCccEEEEEeeCCCcEEEEEcCCC
Q 012007 432 GDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 432 ~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
+++++..++.|++|++...
T Consensus 290 -----l~va~~~~~~v~v~~id~~ 308 (333)
T d1ri6a_ 290 -----LIAAGQKSHHISVYEIVGE 308 (333)
T ss_dssp -----EEEECTTTCEEEEEEEETT
T ss_pred -----EEEEECCCCeEEEEEEECC
Confidence 4455566799999977543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.85 E-value=7.2e-19 Score=168.03 Aligned_cols=294 Identities=9% Similarity=0.023 Sum_probs=192.5
Q ss_pred ccceeeeeeecccEE--EEEecCCEEEEeeCCCcEEEeeCCcc-------ccccccCcccEEEEEEeCCCCEEEE-EeCC
Q 012007 113 NGLIGSIVRKEGHIY--SLAASGDLLYTGSDSKNIRVWKNLKE-------FSGFKSNSGLVKAIIISGDSNKIFT-GHQD 182 (473)
Q Consensus 113 ~~~~~~l~~h~~~V~--~~~~~g~~l~tg~~dg~i~vwd~~~~-------~~~~~~h~~~V~~l~~s~~~~~l~s-~~~d 182 (473)
...+.++..|.. +. ++++||++|++++.||+|++||+... +....+|.+.+.+++|+|||++|++ +..+
T Consensus 52 ~~~~~~l~~g~~-~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~ 130 (426)
T d1hzua2 52 KKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWP 130 (426)
T ss_dssp CSEEEEEECCSS-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEES
T ss_pred CcEEEEEeCCCC-eeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCC
Confidence 355677766643 54 45567999999999999999997522 2233467777888899999998755 4578
Q ss_pred CeEEEEeCCCCCeeeEEeeccccc---------cceeEeecCCCcceE----------EEee----cceeeEeeccCCee
Q 012007 183 GKIRIWKVSRKNASVHKRVGSLPT---------FKDYVKSSVNPKNYV----------EVRR----NRSVLKIRHYDAVS 239 (473)
Q Consensus 183 g~i~vwd~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~----------~~~~----~~~~~~~~~~~~v~ 239 (473)
+.+++||..+.............. ....+....+....+ .... ......+.+...+.
T Consensus 131 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 210 (426)
T d1hzua2 131 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLA 210 (426)
T ss_dssp SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEE
T ss_pred CeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccE
Confidence 999999999987665443221110 001111111111111 1111 01223456778889
Q ss_pred EEEEcCCCCEEEEEeC-CCCEEEEEcCCCeeeEEeecCC--CceeEEEEc--CCC--EEEEEeCCCcEEEEeCcccCCC-
Q 012007 240 CLSLNAEQGLLYSGSW-DKTLKVWRISDCKCLESINAHD--DAINSVVAG--FDS--LVFTGSADGTVKVWRRELQGKG- 311 (473)
Q Consensus 240 ~l~~~~~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~~--~~v~~l~~~--~~~--~l~s~~~dg~i~vwd~~~~~~~- 311 (473)
.+.|+|++++++++.. +..+.+++..+++.+..+.... .....+.+. ..+ ..+....|+.+.+|+.......
T Consensus 211 ~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~ 290 (426)
T d1hzua2 211 DGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ 290 (426)
T ss_dssp EEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTT
T ss_pred eeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccccccc
Confidence 9999999998888864 4568999999999887775332 222233322 222 2334556889999987643211
Q ss_pred cceeeeeeeccCCccEEEEEEccCCCEEEE-------eCCCCcEEEEecCCccccccee--------ecCcceEE--EEE
Q 012007 312 TKHCLAQVLLKHENAVTALAVNQESAVVYC-------GSSDGLVNFWECEKHLSHGGVL--------RGHKMAVL--CLA 374 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~v~--~~~ 374 (473)
........+.+|...+..++|+|++++|++ +..|++|++||+++........ ..|...+. .|+
T Consensus 291 ~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fS 370 (426)
T d1hzua2 291 YAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYN 370 (426)
T ss_dssp TBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEEC
T ss_pred ccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEEC
Confidence 122445677889999999999999999995 4457899999998765443322 23444454 567
Q ss_pred ecCCEEEEE-----eCCCcEEEEecCCCCceeEEEEecCCC
Q 012007 375 AAGNLVFSG-----SADRNICLWRREESGAHSCLAVLTGHT 410 (473)
Q Consensus 375 ~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~h~ 410 (473)
+||++++.+ +.++.|+|||..+ .+....+.++.
T Consensus 371 pDGk~i~vs~~~~~~~~~~i~v~D~~T---~k~~~~i~~~~ 408 (426)
T d1hzua2 371 KRGDEVWFSVWNGKNDSSALVVVDDKT---LKLKAVVKDPR 408 (426)
T ss_dssp SSSSEEEEEECCCTTSCCEEEEEETTT---TEEEEEECCTT
T ss_pred CCCCEEEEEEecCCCCCCeEEEEECCC---CeEEEEECCCC
Confidence 889877543 3578899999999 56677777664
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.81 E-value=2e-17 Score=149.42 Aligned_cols=236 Identities=13% Similarity=0.175 Sum_probs=167.6
Q ss_pred EEEEecCCEE-EEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEE-EeCCCeEEEEeCCCCCeeeEEeec
Q 012007 127 YSLAASGDLL-YTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFT-GHQDGKIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 127 ~~~~~~g~~l-~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~ 202 (473)
.+++++|++| ++++.++.|++||.. +.+..+..+. .+..++|++++.+++. +..++.+.+|+..+++......
T Consensus 37 va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 113 (301)
T d1l0qa2 37 AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-- 113 (301)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--
T ss_pred EEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccccccccccccceeeecccccceeeeecc--
Confidence 3556678877 466778999999976 4445555554 4689999999986655 5567889999998876543332
Q ss_pred cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEE-EeCCCCEEEEEcCCCeeeEEeecCCCcee
Q 012007 203 SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYS-GSWDKTLKVWRISDCKCLESINAHDDAIN 281 (473)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s-~s~dg~v~vwd~~~~~~~~~~~~~~~~v~ 281 (473)
+.....++.|+|++..++. +..++.+.+|+..+.+.+..+..+ ..+.
T Consensus 114 -------------------------------~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 161 (301)
T d1l0qa2 114 -------------------------------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPK 161 (301)
T ss_dssp -------------------------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEE
T ss_pred -------------------------------ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCce
Confidence 5567789999999987765 456788999999999998888754 4577
Q ss_pred EEEEcCCC-EEEEEeC-CCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC---CCCcEEEEecCCc
Q 012007 282 SVVAGFDS-LVFTGSA-DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS---SDGLVNFWECEKH 356 (473)
Q Consensus 282 ~l~~~~~~-~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~---~dg~i~iwd~~~~ 356 (473)
.+.+++++ .+++++. ++.+.+|+.... .. .........+..+++++++..++++. .++.|.+||+.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~ 234 (301)
T d1l0qa2 162 GIAVTPDGTKVYVANFDSMSISVIDTVTN------SV-IDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (301)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTT------EE-EEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred EEEeeccccceeeecccccccccccccce------ee-eecccccCCcceeeccccccccccccccceeeeeeeeecCCC
Confidence 88898887 5555554 566777776421 12 22233445678899999998877653 4468999999886
Q ss_pred ccccceeecCcceEEEEEecCCEE-EEEeCCCcEEEEecCCCCceeEEEEec
Q 012007 357 LSHGGVLRGHKMAVLCLAAAGNLV-FSGSADRNICLWRREESGAHSCLAVLT 407 (473)
Q Consensus 357 ~~~~~~~~~~~~~v~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~ 407 (473)
........+....-.+++++|++| ++++.|+.|++||+.+ .+.+.++.
T Consensus 235 ~~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t---~~~~~~~~ 283 (301)
T d1l0qa2 235 KITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT---NTITATMA 283 (301)
T ss_dssp EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT---TEEEEEEE
T ss_pred eEEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCC---CeEEEEEe
Confidence 554333333333446677889976 5777899999999998 45555543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.80 E-value=5.6e-18 Score=157.29 Aligned_cols=286 Identities=10% Similarity=0.043 Sum_probs=183.5
Q ss_pred EEEecCCEEEEee-----CCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEe----------CCCeEEEEeC
Q 012007 128 SLAASGDLLYTGS-----DSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGH----------QDGKIRIWKV 190 (473)
Q Consensus 128 ~~~~~g~~l~tg~-----~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~dg~i~vwd~ 190 (473)
+.++||+.+++.. .+..|.+||.. +.+..+..+ .+..++|+|||++|++.+ .|+.|++||.
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~ 85 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 85 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC--SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC--CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEEC
Confidence 4567888776653 35579999965 334444443 444799999999887643 4789999999
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe--CCCCEEEEEcCCCe
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS--WDKTLKVWRISDCK 268 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s--~dg~v~vwd~~~~~ 268 (473)
.+++............. ........++|++++++++++. .+..+.+|+..+++
T Consensus 86 ~t~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~ 140 (355)
T d2bbkh_ 86 VTLLPTADIELPDAPRF-------------------------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA 140 (355)
T ss_dssp TTCCEEEEEEETTCCCC-------------------------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred CCCCEEEEEecCCccee-------------------------ecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCc
Confidence 99886655443221110 1223345688999999988875 45679999999999
Q ss_pred eeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcE
Q 012007 269 CLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLV 348 (473)
Q Consensus 269 ~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i 348 (473)
.+..+..+.... +........++.+.|+...++...................+...+....+.+++..++.++.++.+
T Consensus 141 ~~~~~~~~~~~~--~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (355)
T d2bbkh_ 141 FKRMLDVPDCYH--IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKI 218 (355)
T ss_dssp EEEEEECCSEEE--EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEE
T ss_pred EeeEEecCCcce--EeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeE
Confidence 988887554322 111122234444555555555443222111111111122334445566788888888899999999
Q ss_pred EEEecCCccccc-ceee------------cCcceEEEEEecCCEEEEEeCC----------CcEEEEecCCCCceeEEEE
Q 012007 349 NFWECEKHLSHG-GVLR------------GHKMAVLCLAAAGNLVFSGSAD----------RNICLWRREESGAHSCLAV 405 (473)
Q Consensus 349 ~iwd~~~~~~~~-~~~~------------~~~~~v~~~~~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~ 405 (473)
++|++....... .... .+......+++++..++....+ ..|.+||..+. +.+..
T Consensus 219 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~---~~~~~ 295 (355)
T d2bbkh_ 219 HQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG---ERLAK 295 (355)
T ss_dssp EEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC---CEEEE
T ss_pred EEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCC---cEEEE
Confidence 999987643211 1111 1222346777888887766543 36999999983 45555
Q ss_pred ecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 406 LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 406 ~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
+. +...+.+++|+||++. .++++++.|+.|+|||+.+++.
T Consensus 296 ~~-~~~~~~~~a~spDG~~-----------~l~v~~~~d~~i~v~D~~tg~~ 335 (355)
T d2bbkh_ 296 FE-MGHEIDSINVSQDEKP-----------LLYALSTGDKTLYIHDAESGEE 335 (355)
T ss_dssp EE-EEEEECEEEECCSSSC-----------EEEEEETTTTEEEEEETTTCCE
T ss_pred ec-CCCCEEEEEEcCCCCe-----------EEEEEECCCCEEEEEECCCCCE
Confidence 44 3456899999999863 1467788899999999998864
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.78 E-value=8.1e-18 Score=154.54 Aligned_cols=235 Identities=12% Similarity=0.059 Sum_probs=165.0
Q ss_pred EEEEecCCEE-EEeeCCCcEEEeeCC--ccccccccC-----cccEEEEEEeCCCCEEEEEeC------------CCeEE
Q 012007 127 YSLAASGDLL-YTGSDSKNIRVWKNL--KEFSGFKSN-----SGLVKAIIISGDSNKIFTGHQ------------DGKIR 186 (473)
Q Consensus 127 ~~~~~~g~~l-~tg~~dg~i~vwd~~--~~~~~~~~h-----~~~V~~l~~s~~~~~l~s~~~------------dg~i~ 186 (473)
.++++||++| ++++.++.|.+||.. +.+..+..+ ...+..++|+|++++++++.. ++.+.
T Consensus 39 i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~ 118 (337)
T d1pbyb_ 39 PMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVA 118 (337)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEE
T ss_pred EEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecccccccee
Confidence 4677789987 566789999999975 333333333 334568999999999988864 46677
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCC
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD 266 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~ 266 (473)
+||..+........ +...+.+++|+++++++++++. .+.+||..+
T Consensus 119 ~~d~~~~~~~~~~~---------------------------------~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~ 163 (337)
T d1pbyb_ 119 LYDAETLSRRKAFE---------------------------------APRQITMLAWARDGSKLYGLGR--DLHVMDPEA 163 (337)
T ss_dssp EEETTTTEEEEEEE---------------------------------CCSSCCCEEECTTSSCEEEESS--SEEEEETTT
T ss_pred eccccCCeEEEecc---------------------------------ccCCceEEEEcCCCCEEEEEcC--Ccceeeeec
Confidence 88887765433332 5566788999999999999874 578999999
Q ss_pred CeeeEEeecCCCceeEEEEcCCC-------------------------EEEEEeCCCcEEEEeCcccCCCcceeeeeeec
Q 012007 267 CKCLESINAHDDAINSVVAGFDS-------------------------LVFTGSADGTVKVWRRELQGKGTKHCLAQVLL 321 (473)
Q Consensus 267 ~~~~~~~~~~~~~v~~l~~~~~~-------------------------~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 321 (473)
++....+..+.... ...+.+++ .+..+..++.+.+|+... .........
T Consensus 164 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 237 (337)
T d1pbyb_ 164 GTLVEDKPIQSWEA-ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET-----GEMAMREVR 237 (337)
T ss_dssp TEEEEEECSTTTTT-TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT-----CCEEEEEEE
T ss_pred CcEEEEeecCCccc-cceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCC-----CcEEEEEec
Confidence 99888776433211 11111111 111123345678888763 222334455
Q ss_pred cCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCcee
Q 012007 322 KHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHS 401 (473)
Q Consensus 322 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 401 (473)
.+...+..+.+++++.+++.+ ++.|++||+.+.........++.....+++++|++|++++.|+.|++||..+. +
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~---~ 312 (337)
T d1pbyb_ 238 IMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL---E 312 (337)
T ss_dssp ECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC---C
T ss_pred CCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC---c
Confidence 677888999999999998776 58999999998776655555555556777889999999999999999999984 4
Q ss_pred EEEEec
Q 012007 402 CLAVLT 407 (473)
Q Consensus 402 ~~~~~~ 407 (473)
.+..+.
T Consensus 313 ~v~~i~ 318 (337)
T d1pbyb_ 313 KKGQVD 318 (337)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 455443
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.76 E-value=1.4e-15 Score=141.96 Aligned_cols=289 Identities=9% Similarity=-0.016 Sum_probs=181.6
Q ss_pred EEEecCCEEEEe-----eCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeC----------CCeEEEEeC
Q 012007 128 SLAASGDLLYTG-----SDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQ----------DGKIRIWKV 190 (473)
Q Consensus 128 ~~~~~g~~l~tg-----~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~----------dg~i~vwd~ 190 (473)
+++++|+.++.. +.++.|.+||.. +.+..+..+.. ..++|+|||++|++++. ++.|.+||.
T Consensus 27 a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~ 104 (373)
T d2madh_ 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL--PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred ccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCC--ccEEEcCCCCEEEEEeecCCcccccccceEEEEEEC
Confidence 456678877654 234568888854 44555554443 37999999999998753 578999999
Q ss_pred CCCCeeeEEeecccccc------ceeEeecC---------CCcceEEEeecceeeEeeccCCeeEEEEcCCCCEE-EEEe
Q 012007 191 SRKNASVHKRVGSLPTF------KDYVKSSV---------NPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLL-YSGS 254 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~------~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~s~s 254 (473)
.+++............. ..+..+.. .+...+............+.....++.++++++.+ ++.+
T Consensus 105 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~ 184 (373)
T d2madh_ 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLC 184 (373)
T ss_pred CCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEc
Confidence 99887654433221110 11111111 11111112122222234456667889999988755 6788
Q ss_pred CCCCEEEEEcCCCeeeEEeecCC------CceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceee------eeeecc
Q 012007 255 WDKTLKVWRISDCKCLESINAHD------DAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCL------AQVLLK 322 (473)
Q Consensus 255 ~dg~v~vwd~~~~~~~~~~~~~~------~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~------~~~~~~ 322 (473)
.|+.+.+|+...++.......+. .....+.+.+++.++..+.++.+.+|+............ ......
T Consensus 185 ~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (373)
T d2madh_ 185 AQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTW 264 (373)
T ss_pred CCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeee
Confidence 99999999999888776554322 223345566677778888899999998764321000000 000001
Q ss_pred CCccEEEEEEccCCCEE----------EEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCC--EEEEEeCCCcEE
Q 012007 323 HENAVTALAVNQESAVV----------YCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGN--LVFSGSADRNIC 390 (473)
Q Consensus 323 ~~~~v~~l~~~~~~~~l----------~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~ 390 (473)
.......+++++++..+ +....++.+.+||..++........++...-+.|++||+ ++++++.|+.|+
T Consensus 265 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~ 344 (373)
T d2madh_ 265 RPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLH 344 (373)
T ss_pred ccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEE
Confidence 11223445566655544 445566789999998876665554455555577788988 456889999999
Q ss_pred EEecCCCCceeEEEEecCCCCceeEEEEecC
Q 012007 391 LWRREESGAHSCLAVLTGHTGPVKCLAVEED 421 (473)
Q Consensus 391 iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 421 (473)
+||+.+ .+.+..+.++....+.|++.++
T Consensus 345 v~D~~t---g~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 345 IYDAGA---GDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred EEECCC---CCEEEEECCCCCCCcEEEEecC
Confidence 999999 5778888888888888887664
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.72 E-value=1.9e-15 Score=140.93 Aligned_cols=242 Identities=8% Similarity=-0.026 Sum_probs=157.5
Q ss_pred ccCcccEEEEEEeCCCCEEEEEe-----CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEe
Q 012007 158 KSNSGLVKAIIISGDSNKIFTGH-----QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKI 232 (473)
Q Consensus 158 ~~h~~~V~~l~~s~~~~~l~s~~-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (473)
..+.+++..++++|||+.++... .++.|.+||..+++.......
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~------------------------------- 65 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG------------------------------- 65 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeC-------------------------------
Confidence 45788999999999999987642 346799999998876554321
Q ss_pred eccCCeeEEEEcCCCCEEEEEe----------CCCCEEEEEcCCCeeeEEeecCCCceeE-------EEEcCCC-E--EE
Q 012007 233 RHYDAVSCLSLNAEQGLLYSGS----------WDKTLKVWRISDCKCLESINAHDDAINS-------VVAGFDS-L--VF 292 (473)
Q Consensus 233 ~~~~~v~~l~~~~~~~~l~s~s----------~dg~v~vwd~~~~~~~~~~~~~~~~v~~-------l~~~~~~-~--l~ 292 (473)
+. ...++|+|||++|++++ .++.|.+||+.+++.+..+..+...... +.+++++ . ++
T Consensus 66 -~~--~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~ 142 (373)
T d2madh_ 66 -GF--LPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFF 142 (373)
T ss_pred -CC--CccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEE
Confidence 22 23689999999999875 3578999999999999888777655543 4555555 2 22
Q ss_pred EEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCE-EEEeCCCCcEEEEecCCcccccce---------
Q 012007 293 TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAV-VYCGSSDGLVNFWECEKHLSHGGV--------- 362 (473)
Q Consensus 293 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~--------- 362 (473)
....++.+.+|+.... ....+.....++.++|+++. +++.+.|+.+.+|+..........
T Consensus 143 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (373)
T d2madh_ 143 QFAAGPAVGLVVQGGS----------SDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQ 212 (373)
T ss_pred EEcCCCceEEeeccCC----------eEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCc
Confidence 3344566777776421 11223334567778887754 456777888888876432111000
Q ss_pred ----------------eecC-----------------------------------cceEEEEEecCC----------EEE
Q 012007 363 ----------------LRGH-----------------------------------KMAVLCLAAAGN----------LVF 381 (473)
Q Consensus 363 ----------------~~~~-----------------------------------~~~v~~~~~~~~----------~l~ 381 (473)
.... ......+++++. .++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 292 (373)
T d2madh_ 213 NLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWK 292 (373)
T ss_pred cceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEE
Confidence 0000 000112222333 334
Q ss_pred EEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 382 SGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 382 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
....++.|.+||..+ .+.+..+. +...+.+++|+||++. .++++++.|+.|+|||+.+++..
T Consensus 293 ~~~~~~~v~~~d~~t---~~~~~~~~-~~~~~~~~a~spDG~~-----------~l~vt~~~d~~v~v~D~~tg~~~ 354 (373)
T d2madh_ 293 LHAAAKEVTSVTGLV---GQTSSQIS-LGHDVDAISVAQDGGP-----------DLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred eecCCCeEEEEECCC---CcEEEEec-CCCCeeEEEECCCCCE-----------EEEEEeCCCCeEEEEECCCCCEE
Confidence 455667889999888 34555543 5567899999999873 14578999999999999998753
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.71 E-value=1.6e-15 Score=144.33 Aligned_cols=192 Identities=10% Similarity=0.018 Sum_probs=135.5
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEE
Q 012007 172 DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLY 251 (473)
Q Consensus 172 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 251 (473)
+.-++++.+.||+|.|||..+++....... + ..+..++|+|||++|+
T Consensus 31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~--------------------------------g-~~~~~v~fSpDG~~l~ 77 (432)
T d1qksa2 31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDT--------------------------------G-YAVHISRLSASGRYLF 77 (432)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEEC--------------------------------S-SCEEEEEECTTSCEEE
T ss_pred CcEEEEEEcCCCEEEEEECCCCcEEEEEeC--------------------------------C-CCeeEEEECCCCCEEE
Confidence 333468899999999999999987666542 2 4689999999999999
Q ss_pred EEeCCCCEEEEEcCCCee--eEEee---cCCCceeEEEEcCCC-E-EEEEeCCCcEEEEeCcccCCCcceee-----eee
Q 012007 252 SGSWDKTLKVWRISDCKC--LESIN---AHDDAINSVVAGFDS-L-VFTGSADGTVKVWRRELQGKGTKHCL-----AQV 319 (473)
Q Consensus 252 s~s~dg~v~vwd~~~~~~--~~~~~---~~~~~v~~l~~~~~~-~-l~s~~~dg~i~vwd~~~~~~~~~~~~-----~~~ 319 (473)
+++.|++|++||+.+++. +..++ .|.+.+.+..|+||+ + ++++..++.|++||............ ...
T Consensus 78 ~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~ 157 (432)
T d1qksa2 78 VIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQ 157 (432)
T ss_dssp EEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTC
T ss_pred EEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccce
Confidence 999999999999988763 33333 455556666778888 4 57888899999999875432110000 011
Q ss_pred eccCCccEEEEEEccCCCEE-EEeCCCCcEEEEecCCcccccce--eecCcceEEEEEecCCEEEEEeC-CCcEEEEecC
Q 012007 320 LLKHENAVTALAVNQESAVV-YCGSSDGLVNFWECEKHLSHGGV--LRGHKMAVLCLAAAGNLVFSGSA-DRNICLWRRE 395 (473)
Q Consensus 320 ~~~~~~~v~~l~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~-dg~i~iwd~~ 395 (473)
...+......+.++|++..+ ++...++.|.+||..+....... ..+....-..++++|+++++++. ++.+.++|..
T Consensus 158 ~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~ 237 (432)
T d1qksa2 158 EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK 237 (432)
T ss_dssp CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred eccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecc
Confidence 22345667889999998765 55677899999998765433212 22222334667788998777765 4578888887
Q ss_pred C
Q 012007 396 E 396 (473)
Q Consensus 396 ~ 396 (473)
+
T Consensus 238 ~ 238 (432)
T d1qksa2 238 E 238 (432)
T ss_dssp T
T ss_pred c
Confidence 6
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.67 E-value=1.4e-15 Score=139.91 Aligned_cols=237 Identities=6% Similarity=-0.034 Sum_probs=155.5
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCC
Q 012007 167 IIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAE 246 (473)
Q Consensus 167 l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 246 (473)
++|++++++|++++.|+.|.+||+.+++......+. +...+.+++|+||
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~-------------------------------~~~~p~~l~~spD 50 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP-------------------------------DKFGPGTAMMAPD 50 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECS-------------------------------SCCSSCEEEECTT
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcC-------------------------------CCCCcceEEECCC
Confidence 468899999999999999999999998765544432 5567789999999
Q ss_pred CCEEEE-EeCCCCEEEEEcCCCeeeEEeecCC------CceeEEEEcCCC-EEEEEe------------CCCcEEEEeCc
Q 012007 247 QGLLYS-GSWDKTLKVWRISDCKCLESINAHD------DAINSVVAGFDS-LVFTGS------------ADGTVKVWRRE 306 (473)
Q Consensus 247 ~~~l~s-~s~dg~v~vwd~~~~~~~~~~~~~~------~~v~~l~~~~~~-~l~s~~------------~dg~i~vwd~~ 306 (473)
|+++++ +..++.|++||+.+++.+..+.... ..+..+++++++ ++++++ .++.+.+|+..
T Consensus 51 G~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~ 130 (346)
T d1jmxb_ 51 NRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA 130 (346)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGG
T ss_pred CCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecc
Confidence 998755 4578999999999999988776432 245678899998 555443 47788889876
Q ss_pred ccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeec--------------------C
Q 012007 307 LQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRG--------------------H 366 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------------------~ 366 (473)
...... ..........+..+.+++++.+++.+ +.+.+|+..+.........+ .
T Consensus 131 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (346)
T d1jmxb_ 131 DGLEAK----PVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSP 203 (346)
T ss_dssp GGGGBC----CSEEEECCSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCT
T ss_pred cceeee----EEEeeeccCceEEEEecCCCEEEEeC---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecC
Confidence 432111 11112223445667777787766553 45888887654322111100 0
Q ss_pred cceEEEE------EecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEE
Q 012007 367 KMAVLCL------AAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYS 440 (473)
Q Consensus 367 ~~~v~~~------~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s 440 (473)
...+... ......++++..++.+.+|+..++. ........|...+..+.+++++. .++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~ 268 (346)
T d1jmxb_ 204 RHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK--THTQEFADLTELYFTGLRSPKDP-------------NQIY 268 (346)
T ss_dssp TCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC--EEEEEEEECSSCEEEEEECSSCT-------------TEEE
T ss_pred CCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCc--eEEEEeecccceeEEEEEeCCCC-------------EEEE
Confidence 0111111 1123445566667789999988742 33444556788899999999887 4555
Q ss_pred eeCCCcEEEEEcCCCCC
Q 012007 441 GSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 441 ~s~Dg~v~iW~i~~~~~ 457 (473)
+. ++.|.+||+.+++.
T Consensus 269 ~~-~~~v~v~d~~~~~~ 284 (346)
T d1jmxb_ 269 GV-LNRLAKYDLKQRKL 284 (346)
T ss_dssp EE-ESEEEEEETTTTEE
T ss_pred ec-CCeEEEEECCCCcE
Confidence 54 45799999987653
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.65 E-value=7.6e-15 Score=136.79 Aligned_cols=274 Identities=6% Similarity=-0.059 Sum_probs=174.5
Q ss_pred eeCCCcEE--EeeCC--ccccccccCcccEEEEEEeCCCCEEEEEe----------CCCeEEEEeCCCCCeeeEEeeccc
Q 012007 139 GSDSKNIR--VWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGH----------QDGKIRIWKVSRKNASVHKRVGSL 204 (473)
Q Consensus 139 g~~dg~i~--vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~ 204 (473)
...+|... +||.. +.+.....+... .++|+|||++|++.+ .|+.|++||..+.+..........
T Consensus 40 ~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~ 117 (368)
T d1mdah_ 40 AYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA 117 (368)
T ss_dssp TTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS
T ss_pred ccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCcc
Confidence 34455544 44644 334444444433 589999999988765 367899999999876655443211
Q ss_pred cccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEEeecCCCceeEE
Q 012007 205 PTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAHDDAINSV 283 (473)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~v~~l 283 (473)
... ........++|+|||++|+++. .++.+.+||+.+++.+..+..+.....
T Consensus 118 ~~~-------------------------~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-- 170 (368)
T d1mdah_ 118 PRF-------------------------SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI-- 170 (368)
T ss_dssp CSC-------------------------CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC--
T ss_pred cee-------------------------cccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE--
Confidence 100 0122334689999999998886 569999999999999998876654432
Q ss_pred EEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccc---
Q 012007 284 VAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHG--- 360 (473)
Q Consensus 284 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--- 360 (473)
.......+++.+.||.+.+|++.................+...+....+.+++..+... ++.+.+++........
T Consensus 171 ~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~ 248 (368)
T d1mdah_ 171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAA 248 (368)
T ss_dssp EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECC
T ss_pred ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEee
Confidence 22233477788899999999887554332222223334455555667777777666544 3445555543321110
Q ss_pred ----------ceeecCcceEEEEEecCCEEEEEeCC---------CcEEEEecCCCCceeEEEEecCCCCceeEEEEecC
Q 012007 361 ----------GVLRGHKMAVLCLAAAGNLVFSGSAD---------RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEED 421 (473)
Q Consensus 361 ----------~~~~~~~~~v~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 421 (473)
............+++++..++....+ ..|.+||..+ .+.+..+. +...+.+++|+||
T Consensus 249 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t---~~~~~~~~-~~~~~~~~a~spD 324 (368)
T d1mdah_ 249 IDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV---GQTSGPIS-NGHDSDAIIAAQD 324 (368)
T ss_dssp CCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS---CCEEECCE-EEEEECEEEECCS
T ss_pred cccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCC---CcEeEEec-CCCceeEEEECCC
Confidence 01112223456778888776655322 3588999988 35555554 3457899999999
Q ss_pred CCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCCC
Q 012007 422 RDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPD 458 (473)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~~ 458 (473)
++. .+++++..|+.|+|||..+++..
T Consensus 325 G~~-----------~ly~s~~~~~~v~v~D~~tgk~~ 350 (368)
T d1mdah_ 325 GAS-----------DNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp SSC-----------EEEEEETTTTEEEEEESSSCEEE
T ss_pred CCE-----------EEEEEeCCCCeEEEEECCCCCEE
Confidence 863 14577788999999999887643
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=2.8e-13 Score=123.63 Aligned_cols=247 Identities=10% Similarity=0.147 Sum_probs=159.6
Q ss_pred eeecccEEE--EEecCCEEEEee-CCCcEEEeeCCc--cccc---cccCcccEEEEEEeCCCCEEEEEeC-CCeEEEEeC
Q 012007 120 VRKEGHIYS--LAASGDLLYTGS-DSKNIRVWKNLK--EFSG---FKSNSGLVKAIIISGDSNKIFTGHQ-DGKIRIWKV 190 (473)
Q Consensus 120 ~~h~~~V~~--~~~~g~~l~tg~-~dg~i~vwd~~~--~~~~---~~~h~~~V~~l~~s~~~~~l~s~~~-dg~i~vwd~ 190 (473)
..|.+.|.. +++||++|++++ .|+.|++|++.. .... ...+...+..++|+|||++|++++. ++.|.+|+.
T Consensus 33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~ 112 (333)
T d1ri6a_ 33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL 112 (333)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecc
Confidence 356677765 566799886555 589999998542 2222 2234456788999999999999885 678999988
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC-CCEEEEEcCCCee
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD-KTLKVWRISDCKC 269 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d-g~v~vwd~~~~~~ 269 (473)
............ .+...+.++.++++++++++++.+ ..|.+|+......
T Consensus 113 ~~~~~~~~~~~~------------------------------~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~ 162 (333)
T d1ri6a_ 113 EDGLPVGVVDVV------------------------------EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH 162 (333)
T ss_dssp ETTEEEEEEEEE------------------------------CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred ccccceeccccc------------------------------CCCccceEEEeeecceeeeccccccceeeEEEeccCCc
Confidence 766543322211 266678889999999998888744 5699999876432
Q ss_pred eEE------eecCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeee-e---eeccCCccEEEEEEccCCC
Q 012007 270 LES------INAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLA-Q---VLLKHENAVTALAVNQESA 337 (473)
Q Consensus 270 ~~~------~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~---~~~~~~~~v~~l~~~~~~~ 337 (473)
... ..........+++++++ .+.+....+...+|+............. . ...........++++++++
T Consensus 163 ~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 242 (333)
T d1ri6a_ 163 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR 242 (333)
T ss_dssp EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred ceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccC
Confidence 221 12234556788998887 3445556778888887543221111000 0 1112345567889999998
Q ss_pred EEEE-eCCCCcEEEEecCCcccccceee--cC--cceEEEEEecCCEEEEEe-CCCcEEEEecCC
Q 012007 338 VVYC-GSSDGLVNFWECEKHLSHGGVLR--GH--KMAVLCLAAAGNLVFSGS-ADRNICLWRREE 396 (473)
Q Consensus 338 ~l~~-~~~dg~i~iwd~~~~~~~~~~~~--~~--~~~v~~~~~~~~~l~s~~-~dg~i~iwd~~~ 396 (473)
+++. +..++.+.+|++........... .. ...-.+++++|++|++++ .++.|.+|+++.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~ 307 (333)
T d1ri6a_ 243 HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG 307 (333)
T ss_dssp EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred ceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence 6655 56678999998865433222211 11 122367889999877765 468899997654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.60 E-value=1.8e-14 Score=133.13 Aligned_cols=272 Identities=9% Similarity=0.023 Sum_probs=169.3
Q ss_pred ccceeeeeeecccEEEEEecCCEEEEe----------eCCCcEEEeeCCc--cccccccC-------cccEEEEEEeCCC
Q 012007 113 NGLIGSIVRKEGHIYSLAASGDLLYTG----------SDSKNIRVWKNLK--EFSGFKSN-------SGLVKAIIISGDS 173 (473)
Q Consensus 113 ~~~~~~l~~h~~~V~~~~~~g~~l~tg----------~~dg~i~vwd~~~--~~~~~~~h-------~~~V~~l~~s~~~ 173 (473)
..++.++..+...-.++++||++|++. ..|+.|++||... .+..+..+ ......++|++++
T Consensus 38 g~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 117 (355)
T d2bbkh_ 38 GRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG 117 (355)
T ss_dssp TEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS
T ss_pred CcEEEEEECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCC
Confidence 345667776766667889999988764 3478999999652 22222211 2234568999999
Q ss_pred CEEEEEe--CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEE
Q 012007 174 NKIFTGH--QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLY 251 (473)
Q Consensus 174 ~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 251 (473)
++++.+. .+..+.+|+..+++........... ..........+.+++++..++
T Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~dg~~~~ 172 (355)
T d2bbkh_ 118 KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY-------------------------HIFPTAPDTFFMHCRDGSLAK 172 (355)
T ss_dssp SEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE-------------------------EEEEEETTEEEEEETTSCEEE
T ss_pred CeeEEecCCCCceeeeeecCCCcEeeEEecCCcc-------------------------eEeecCCcceEEEcCCCCEEE
Confidence 9888775 4578999999988765443321100 000112334456677776665
Q ss_pred EEe-CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcC-CCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccC------
Q 012007 252 SGS-WDKTLKVWRISDCKCLESINAHDDAINSVVAGF-DSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKH------ 323 (473)
Q Consensus 252 s~s-~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~------ 323 (473)
... .++.+.+++...... .+...+....+.+ ++.++.++.++.+.+|++...... .......+
T Consensus 173 v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~~ 243 (355)
T d2bbkh_ 173 VAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAK----FLPAVEALTEAERA 243 (355)
T ss_dssp EECCSSSCCEEEECCCCSC-----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCE----ECCCEESSCHHHHH
T ss_pred EEecCCCeEEEEecccccc-----eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEE----EEeccCCcccceEe
Confidence 543 344455555544322 2233344444444 448888899999999998743210 11111111
Q ss_pred ----CccEEEEEEccCCCEEEEeCCC----------CcEEEEecCCcccccceeecCcceEEEEEecCC--EEEEEeCCC
Q 012007 324 ----ENAVTALAVNQESAVVYCGSSD----------GLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGN--LVFSGSADR 387 (473)
Q Consensus 324 ----~~~v~~l~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg 387 (473)
......+++++++..++....+ ..|.+||..+.........++....+.+++||+ ++++++.|+
T Consensus 244 ~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~ 323 (355)
T d2bbkh_ 244 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDK 323 (355)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTT
T ss_pred eeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCC
Confidence 1223458899999888765443 369999998876554444444444567778887 456777899
Q ss_pred cEEEEecCCCCceeEEEEecCCCCceeEEEEecC
Q 012007 388 NICLWRREESGAHSCLAVLTGHTGPVKCLAVEED 421 (473)
Q Consensus 388 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 421 (473)
.|++||+.+ .+.+..+.++...-..+.+.++
T Consensus 324 ~i~v~D~~t---g~~~~~i~~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 324 TLYIHDAES---GEELRSVNQLGHGPQVITTADM 354 (355)
T ss_dssp EEEEEETTT---CCEEEEECCCCSSCCEEECCCC
T ss_pred EEEEEECCC---CCEEEEEeCcCCCccEEEeCCC
Confidence 999999998 5778888777665566665543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.43 E-value=2.5e-12 Score=123.65 Aligned_cols=132 Identities=12% Similarity=0.065 Sum_probs=95.0
Q ss_pred EEecCCEEEEeeCCCcEEEeeCCccc-------cccccCcccEEEEEEeCCCCEEEEEeC---------CCeEEEEeCCC
Q 012007 129 LAASGDLLYTGSDSKNIRVWKNLKEF-------SGFKSNSGLVKAIIISGDSNKIFTGHQ---------DGKIRIWKVSR 192 (473)
Q Consensus 129 ~~~~g~~l~tg~~dg~i~vwd~~~~~-------~~~~~h~~~V~~l~~s~~~~~l~s~~~---------dg~i~vwd~~~ 192 (473)
+..++++++. .|+.|.+||..... ..+..|...|.++.|+|||++|+.++. ++.+.+||+.+
T Consensus 24 W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~ 101 (470)
T d2bgra1 24 WISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK 101 (470)
T ss_dssp ECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred eCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCC
Confidence 3345666654 46789999965321 245667788999999999999998753 46788999998
Q ss_pred CCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEE
Q 012007 193 KNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES 272 (473)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~ 272 (473)
++..... .+...+....|+|||+++|... ++.+++|+..+++..+.
T Consensus 102 ~~~~~l~---------------------------------~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~ 147 (470)
T d2bgra1 102 RQLITEE---------------------------------RIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRI 147 (470)
T ss_dssp TEECCSS---------------------------------CCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC
T ss_pred Ccccccc---------------------------------cCCccccccccccCcceeeEee-cccceEEECCCCceeee
Confidence 7642211 2778899999999999999865 67899999988876654
Q ss_pred eecC------------------CCceeEEEEcCCC-EEEEEeC
Q 012007 273 INAH------------------DDAINSVVAGFDS-LVFTGSA 296 (473)
Q Consensus 273 ~~~~------------------~~~v~~l~~~~~~-~l~s~~~ 296 (473)
...+ .+....+.|+|++ .|+....
T Consensus 148 t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~ 190 (470)
T d2bgra1 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQF 190 (470)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEE
T ss_pred eeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEe
Confidence 3221 2234567899998 5555543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.42 E-value=2.5e-12 Score=119.37 Aligned_cols=236 Identities=9% Similarity=0.074 Sum_probs=147.1
Q ss_pred CcccEEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCe
Q 012007 160 NSGLVKAIIISGDSNKIFTGH-QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAV 238 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 238 (473)
|........++|||++|++.. .++.|.++|+.+.+......+. +...+
T Consensus 70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP-------------------------------~g~gp 118 (441)
T d1qnia2 70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIP-------------------------------NVQAI 118 (441)
T ss_dssp CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECT-------------------------------TCCCE
T ss_pred cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecC-------------------------------CCCCc
Confidence 334456666789999997665 5789999999998765544432 56678
Q ss_pred eEEEEcCCCC--EEEEEeCCC-----------------CEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCC
Q 012007 239 SCLSLNAEQG--LLYSGSWDK-----------------TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADG 298 (473)
Q Consensus 239 ~~l~~~~~~~--~l~s~s~dg-----------------~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg 298 (473)
..++|+|+++ +++..+.+. .+..+|..+.+....+... .....+.++|++ ++++.+.+.
T Consensus 119 hgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~ns 197 (441)
T d1qnia2 119 HGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNS 197 (441)
T ss_dssp EEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCT
T ss_pred cceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCC
Confidence 8999999888 444444332 2355888888877777644 356778889988 555554432
Q ss_pred -c--------------EEEEeCcc-------------cCCC-------cceeeeeeeccCCccEEEEEEccCCCEEE-Ee
Q 012007 299 -T--------------VKVWRREL-------------QGKG-------TKHCLAQVLLKHENAVTALAVNQESAVVY-CG 342 (473)
Q Consensus 299 -~--------------i~vwd~~~-------------~~~~-------~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~ 342 (473)
. |.+.+... .+.. ........+... .....+.++|||++++ ++
T Consensus 198 e~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvg-ksPhGv~vSPDGkyl~~~~ 276 (441)
T d1qnia2 198 ERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVP-KNPHGLNTSPDGKYFIANG 276 (441)
T ss_dssp TCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCB-SSCCCEEECTTSCEEEEEC
T ss_pred CceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCC-CCccCceECCCCCEEEEeC
Confidence 1 11221100 0000 011111222222 2346799999999875 56
Q ss_pred CCCCcEEEEecCCcccc-------cceeecCc-----ceEEEEEecCCEEEEEeCCCcEEEEecCC-------CCceeEE
Q 012007 343 SSDGLVNFWECEKHLSH-------GGVLRGHK-----MAVLCLAAAGNLVFSGSADRNICLWRREE-------SGAHSCL 403 (473)
Q Consensus 343 ~~dg~i~iwd~~~~~~~-------~~~~~~~~-----~~v~~~~~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~ 403 (473)
..+++|.+||+++.... ...+.++. ..-+.|..+|+.+.+...|..|..|++.. ......+
T Consensus 277 ~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~ 356 (441)
T d1qnia2 277 KLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIR 356 (441)
T ss_dssp TTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEE
T ss_pred CcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeE
Confidence 78999999998753221 11111111 11134555677888888999999999752 1112334
Q ss_pred EEe-----cCCCCceeEEEEecCCCCCcccccCCCccEEEEEe
Q 012007 404 AVL-----TGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSG 441 (473)
Q Consensus 404 ~~~-----~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~ 441 (473)
..+ .||...+.+.+++||++ +|+++
T Consensus 357 ~~~~v~y~~GH~~~~~~~t~~pdGk-------------~l~s~ 386 (441)
T d1qnia2 357 QKLDVQYQPGHNHASLTESRDADGK-------------WLVVL 386 (441)
T ss_dssp EEEECSSCEEEEEETTTTSTTCCCC-------------EEEEE
T ss_pred eccccccCCCCCccccccccCCCCc-------------EEEec
Confidence 443 47777888888999999 88888
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.41 E-value=7.2e-12 Score=116.19 Aligned_cols=268 Identities=10% Similarity=0.068 Sum_probs=157.5
Q ss_pred cccceeeeeeecccEEEEEecCCEEEEee----------CCCcEEEeeCC--ccccccccCc-------ccEEEEEEeCC
Q 012007 112 CNGLIGSIVRKEGHIYSLAASGDLLYTGS----------DSKNIRVWKNL--KEFSGFKSNS-------GLVKAIIISGD 172 (473)
Q Consensus 112 ~~~~~~~l~~h~~~V~~~~~~g~~l~tg~----------~dg~i~vwd~~--~~~~~~~~h~-------~~V~~l~~s~~ 172 (473)
...+++.+..+......+++||++|++.+ .|+.|++||.. +.+..+..+. .....++|+||
T Consensus 55 ~~~~~~~~~~~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpD 134 (368)
T d1mdah_ 55 CGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS 134 (368)
T ss_dssp TTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT
T ss_pred CCcEEEEEeCCCCCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCC
Confidence 34556677777777788999999888754 47789999965 3333332221 22346899999
Q ss_pred CCEEEEEe-CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEE
Q 012007 173 SNKIFTGH-QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLY 251 (473)
Q Consensus 173 ~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 251 (473)
|++|+++. .++.|.+||+.+++.......... ..+ +......++
T Consensus 135 Gk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~-------------------------------~~~----~~~~~~~~v 179 (368)
T d1mdah_ 135 SACLLFFLFGSSAAAGLSVPGASDDQLTKSASC-------------------------------FHI----HPGAAATHY 179 (368)
T ss_dssp SSCEEEEECSSSCEEEEEETTTEEEEEEECSSC-------------------------------CCC----EEEETTEEE
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEeEEeeccCc-------------------------------ceE----ccCCCceEE
Confidence 99998876 579999999999876554432211 000 111234555
Q ss_pred EEeCCCCEEEEEcCCCeeeEE------eecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeee------ee
Q 012007 252 SGSWDKTLKVWRISDCKCLES------INAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLA------QV 319 (473)
Q Consensus 252 s~s~dg~v~vwd~~~~~~~~~------~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~~ 319 (473)
..+.||.+.+|++........ +..+...+....+.+++.++. ..++.+.+++............. ..
T Consensus 180 ~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (368)
T d1mdah_ 180 LGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW-AVASSILQGDIPAAGATMKAAIDGNESGRKA 258 (368)
T ss_dssp CCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEE-CBSSCCEEEECCSSCCEEECCCCSSCTHHHH
T ss_pred EEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEE-ecCCCEEEEeecCCceEEEeecccccceeee
Confidence 556677777777654433221 123344455566666664433 23455666665432110000000 00
Q ss_pred eccCCccEEEEEEccCCCEEEEeCCC---------CcEEEEecCCcccccceeecCcceEEEEEecCC--EEEEEeCCCc
Q 012007 320 LLKHENAVTALAVNQESAVVYCGSSD---------GLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGN--LVFSGSADRN 388 (473)
Q Consensus 320 ~~~~~~~v~~l~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~ 388 (473)
..........+++++++..++....+ ..|.+||..++........++...-..+++||+ +++++..|+.
T Consensus 259 ~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~ 338 (368)
T d1mdah_ 259 DNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEV 338 (368)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTE
T ss_pred eeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCe
Confidence 00001122347889988877665322 358899998876554444444444467888886 3466778899
Q ss_pred EEEEecCCCCceeEEEEecCCCCceeEEEEe
Q 012007 389 ICLWRREESGAHSCLAVLTGHTGPVKCLAVE 419 (473)
Q Consensus 389 i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~ 419 (473)
|++||..+ .+.+..+..... -+.|++.
T Consensus 339 v~v~D~~t---gk~~~~i~~g~~-P~~l~~~ 365 (368)
T d1mdah_ 339 LDIYDAAS---DQDQSSVELDKG-PESLSVQ 365 (368)
T ss_dssp EEEEESSS---CEEEEECCCCSC-CCEEECC
T ss_pred EEEEECCC---CCEEEEEECCCC-CCEEEEe
Confidence 99999998 567777764433 3555553
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.25 E-value=1.7e-09 Score=96.88 Aligned_cols=226 Identities=9% Similarity=0.034 Sum_probs=152.1
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeecccccc
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTF 207 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 207 (473)
++.+||+++++...+++|..|+.......+....+.+.+++|.++|+++++...++.+.+|+.............
T Consensus 34 Av~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~----- 108 (302)
T d2p4oa1 34 ASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLT----- 108 (302)
T ss_dssp EECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEE-----
T ss_pred EECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccc-----
Confidence 567789999999999999999877666666677788999999999999998888888888886554322211110
Q ss_pred ceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee----------cCC
Q 012007 208 KDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN----------AHD 277 (473)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~----------~~~ 277 (473)
.........+++.++++++++-+.++.+..+|...+....... ...
T Consensus 109 ------------------------~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (302)
T d2p4oa1 109 ------------------------LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF 164 (302)
T ss_dssp ------------------------CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS
T ss_pred ------------------------cCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcc
Confidence 0134567889999999988888888889999988765433221 112
Q ss_pred CceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcc
Q 012007 278 DAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHL 357 (473)
Q Consensus 278 ~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~ 357 (473)
.....+.+..+.++++.+..+.|..++.......... ...........+++.++|+++++...++.|..++.....
T Consensus 165 ~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~ 240 (302)
T d2p4oa1 165 PAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEP----EIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRST 240 (302)
T ss_dssp CSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCC----EEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCE
T ss_pred cccccccccCCceeeecCCCCeEEecccccccccccc----ccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCE
Confidence 2456677766667778888899988887643321111 111123345679999999988888889999999876533
Q ss_pred cccceeecCcceEEEEEe-----cCCEEEEEeCC
Q 012007 358 SHGGVLRGHKMAVLCLAA-----AGNLVFSGSAD 386 (473)
Q Consensus 358 ~~~~~~~~~~~~v~~~~~-----~~~~l~s~~~d 386 (473)
.........-....++++ |++.|++++..
T Consensus 241 ~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 241 TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp EEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred EEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 221111112223344444 55666665543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=2.7e-08 Score=86.97 Aligned_cols=233 Identities=14% Similarity=0.056 Sum_probs=136.2
Q ss_pred EEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeCCC---eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcce
Q 012007 145 IRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG---KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNY 220 (473)
Q Consensus 145 i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (473)
|.|-|.. .....+..+...+..-+|||||++||-..... .+.+.+...+......
T Consensus 21 l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 79 (269)
T d2hqsa1 21 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA--------------------- 79 (269)
T ss_dssp EEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE---------------------
T ss_pred EEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEe---------------------
Confidence 4444533 33444445567788999999999998765432 3556666555432221
Q ss_pred EEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC-CCCEEEE--EcCCCeeeEEeecCCCceeEEEEcCCC--EEEEEe
Q 012007 221 VEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVW--RISDCKCLESINAHDDAINSVVAGFDS--LVFTGS 295 (473)
Q Consensus 221 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg~v~vw--d~~~~~~~~~~~~~~~~v~~l~~~~~~--~l~s~~ 295 (473)
.+........|+|+|..++.... ++...++ ........... ..........+.+++ .+++..
T Consensus 80 ------------~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 146 (269)
T d2hqsa1 80 ------------SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAFTSD 146 (269)
T ss_dssp ------------CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECC-CCSSCEEEEEECTTSSEEEEEEC
T ss_pred ------------eeecccccceecCCCCeeeEeeecCCccceeecccccccceeee-eccccccccccccccccceeccc
Confidence 26677888999999998887653 3333333 32222222222 233333444455554 566666
Q ss_pred CCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC-cEE--EEecCCcccccceeecCcceEEE
Q 012007 296 ADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG-LVN--FWECEKHLSHGGVLRGHKMAVLC 372 (473)
Q Consensus 296 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-~i~--iwd~~~~~~~~~~~~~~~~~v~~ 372 (473)
.+|...+|....... ................|+|+++.++..+.++ ... +.|....... ............
T Consensus 147 ~~g~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~p~ 220 (269)
T d2hqsa1 147 QAGRPQVYKVNINGG-----APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDETPS 220 (269)
T ss_dssp TTSSCEEEEEETTSS-----CCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCEEEE
T ss_pred ccCCceEeeeecccc-----cceeeecccccccccccccccceeEEEeecCCceeeeEeecccccce-EeecCccccceE
Confidence 677655555432221 1223334556777889999999887765543 444 4454433221 122233344567
Q ss_pred EEecCCEEEEEeC---CCcEEEEecCCCCceeEEEEecCCCCceeEEEEecC
Q 012007 373 LAAAGNLVFSGSA---DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEED 421 (473)
Q Consensus 373 ~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 421 (473)
++|||+.|+-.+. ...|.++++..+ . ...+....+.+...+|+|-
T Consensus 221 ~SPDG~~i~f~s~~~~~~~l~~~~~dg~---~-~~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 221 LAPNGTMVIYSSSQGMGSVLNLVSTDGR---F-KARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp ECTTSSEEEEEEEETTEEEEEEEETTSC---C-EEECCCSSSEEEEEEECCC
T ss_pred ECCCCCEEEEEEcCCCCcEEEEEECCCC---C-EEEEeCCCCcEEeEEeCCC
Confidence 9999998875443 346888998873 2 3445556777888999983
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.16 E-value=9.7e-08 Score=87.49 Aligned_cols=165 Identities=10% Similarity=0.143 Sum_probs=99.7
Q ss_pred CceeEEEEcCCC-EEEEEe-CCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe-CCCCcEEEEecC
Q 012007 278 DAINSVVAGFDS-LVFTGS-ADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG-SSDGLVNFWECE 354 (473)
Q Consensus 278 ~~v~~l~~~~~~-~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~ 354 (473)
..+.++.++|++ +++++. ....|.+|+.......... ..............++|+|+++++++. -.++.|.+|++.
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~-~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~ 223 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELV-GSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEE-EEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeec-cceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence 346789999999 555554 3457888876532221111 111122335678999999999987554 457899999986
Q ss_pred Cccccccee-e-----------------cC--cceEEEEEecCCEEEEEeC------CCcEEEEecCCCCcee---EEEE
Q 012007 355 KHLSHGGVL-R-----------------GH--KMAVLCLAAAGNLVFSGSA------DRNICLWRREESGAHS---CLAV 405 (473)
Q Consensus 355 ~~~~~~~~~-~-----------------~~--~~~v~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~---~~~~ 405 (473)
......... . .+ ......++++|++|+++.. .+.|..|++...+... .+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~ 303 (365)
T d1jofa_ 224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP 303 (365)
T ss_dssp TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence 532211000 0 01 1224567899999888742 2237778876533222 1122
Q ss_pred ecCCCCceeEEEEec-CCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCC
Q 012007 406 LTGHTGPVKCLAVEE-DRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455 (473)
Q Consensus 406 ~~~h~~~V~~l~~~~-~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~ 455 (473)
.........+++++| +++ +++++...++.|.+|++...
T Consensus 304 ~~~~G~~p~~i~~~p~~G~------------~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 304 TPTSGGHSNAVSPCPWSDE------------WMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CSSCCTTCCCEEECTTCTT------------EEEEECSSSCEEEEEEEETT
T ss_pred EEcCCCCccEEEecCCCCC------------EEEEEeCCCCeEEEEEEeCC
Confidence 222334567899998 566 25666678899999998754
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.14 E-value=2.8e-08 Score=89.10 Aligned_cols=244 Identities=7% Similarity=0.039 Sum_probs=146.6
Q ss_pred cEEEEEEeCCCCEEEEEeC-------CCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeecc
Q 012007 163 LVKAIIISGDSNKIFTGHQ-------DGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHY 235 (473)
Q Consensus 163 ~V~~l~~s~~~~~l~s~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (473)
....++|.++|+++++... +|+|..||..++........... ...
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~----------------------------~~~ 70 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVN----------------------------GYG 70 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEET----------------------------TEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccc----------------------------cCC
Confidence 3566789999987776432 46788898887754332211000 011
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCC----CceeEEEEcCCCEEEEEeCCCc------------
Q 012007 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHD----DAINSVVAGFDSLVFTGSADGT------------ 299 (473)
Q Consensus 236 ~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~----~~v~~l~~~~~~~l~s~~~dg~------------ 299 (473)
..-..+.|.++++.|+++...+.|..++.............. ...+.+++.+++.|+.+...+.
T Consensus 71 g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~ 150 (314)
T d1pjxa_ 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQE 150 (314)
T ss_dssp CCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSS
T ss_pred CcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceecc
Confidence 235679999999999888877789999976554322211111 1357789999885554432211
Q ss_pred --EEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCC-----EEEEeCCCCcEEEEecCCcccccc-----eeec-C
Q 012007 300 --VKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESA-----VVYCGSSDGLVNFWECEKHLSHGG-----VLRG-H 366 (473)
Q Consensus 300 --i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-----~l~~~~~dg~i~iwd~~~~~~~~~-----~~~~-~ 366 (473)
-++|.+...+. . ..........+.++|++++. ++++-+..+.|..||+........ .+.+ +
T Consensus 151 ~~G~v~~~~~dg~--~----~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~ 224 (314)
T d1pjxa_ 151 KFGSIYCFTTDGQ--M----IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH 224 (314)
T ss_dssp SCEEEEEECTTSC--E----EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred CCceEEEEeecCc--e----eEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccc
Confidence 13333321111 1 11111223346789998764 455567788999998754322110 1111 1
Q ss_pred cce--EEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCC
Q 012007 367 KMA--VLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLD 444 (473)
Q Consensus 367 ~~~--v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~D 444 (473)
... -+++..+|++.++....+.|.+||.+.+ ..+..+.......++++|.++++. +++|.+.+
T Consensus 225 ~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g---~~~~~i~~p~~~~t~~afg~d~~~------------lyVt~~~~ 289 (314)
T d1pjxa_ 225 EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG---QPKMRIRCPFEKPSNLHFKPQTKT------------IFVTEHEN 289 (314)
T ss_dssp SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB---SCSEEEECSSSCEEEEEECTTSSE------------EEEEETTT
T ss_pred cccceeeEEecCCcEEEEEcCCCEEEEEeCCCC---EEEEEEECCCCCEEEEEEeCCCCE------------EEEEECCC
Confidence 111 2455567998888878899999998763 334444444567899999998763 67777788
Q ss_pred CcEEEEEcCCC
Q 012007 445 KSVKVWRVSEH 455 (473)
Q Consensus 445 g~v~iW~i~~~ 455 (473)
|.|...++...
T Consensus 290 g~i~~~~~~~~ 300 (314)
T d1pjxa_ 290 NAVWKFEWQRN 300 (314)
T ss_dssp TEEEEEECSSC
T ss_pred CcEEEEECCCC
Confidence 88877776543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.12 E-value=3e-09 Score=98.33 Aligned_cols=255 Identities=9% Similarity=0.047 Sum_probs=140.3
Q ss_pred EEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-
Q 012007 176 IFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS- 254 (473)
Q Consensus 176 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s- 254 (473)
+++++.+|.|+||++.+.+......+........+... .....++. .......-..|.....+....|||++|++..
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~-~es~~vl~-~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~ 91 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGIT-NESKEILG-GDQQYLNGDCHHPHISMTDGRYDGKYLFINDK 91 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTS-HHHHHHHC-SSSCCSCCCBCCCEEEEETTEEEEEEEEEEET
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEEC-CccceEEe-cccccccCcccCCCcceecccCCCCEEEEEcC
Confidence 55677788888888877766554433111000000000 00000000 0000000112555666666788999997765
Q ss_pred CCCCEEEEEcCCCeeeEEeec-CCCceeEEEEcCCC---EEEEEeCCCcE------------------EEEeCcccCCCc
Q 012007 255 WDKTLKVWRISDCKCLESINA-HDDAINSVVAGFDS---LVFTGSADGTV------------------KVWRRELQGKGT 312 (473)
Q Consensus 255 ~dg~v~vwd~~~~~~~~~~~~-~~~~v~~l~~~~~~---~l~s~~~dg~i------------------~vwd~~~~~~~~ 312 (473)
.+.+|.++|+.++++...+.. +...+..+++++++ +++..+. ..+ ..+|.....
T Consensus 92 ~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~-~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~--- 167 (441)
T d1qnia2 92 ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAE-FVIPQPNDGTDFSLDNSYTMFTAIDAETMD--- 167 (441)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEEC-SCEESSCSSSCCCGGGEEEEEEEEETTTCS---
T ss_pred CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccC-CcccccCcccccccccccceEEeecCccce---
Confidence 677899999999998887753 56788999999887 3444333 333 334443211
Q ss_pred ceeeeeeeccCCccEEEEEEccCCCEEEEeCCCC-----------------------------------------cEEEE
Q 012007 313 KHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG-----------------------------------------LVNFW 351 (473)
Q Consensus 313 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-----------------------------------------~i~iw 351 (473)
...+. . -......+.++|+|+++++.+.+. .+.++
T Consensus 168 --v~~qI-~-v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd 243 (441)
T d1qnia2 168 --VAWQV-I-VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVD 243 (441)
T ss_dssp --EEEEE-E-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEE
T ss_pred --eeEEE-e-cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEE
Confidence 11111 1 123467789999999888776442 22222
Q ss_pred ecCCcccccceeecCcceEEEEEecCCEEE-EEeCCCcEEEEecCCCCc--------eeEEEEecCCCCceeEEEEecCC
Q 012007 352 ECEKHLSHGGVLRGHKMAVLCLAAAGNLVF-SGSADRNICLWRREESGA--------HSCLAVLTGHTGPVKCLAVEEDR 422 (473)
Q Consensus 352 d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~--------~~~~~~~~~h~~~V~~l~~~~~~ 422 (473)
+.........+..+..-.-..+++||++++ ++..+++|.|||+.+... ..++.......-.....+|.+++
T Consensus 244 ~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g 323 (441)
T d1qnia2 244 GRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRG 323 (441)
T ss_dssp CSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSS
T ss_pred cccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCc
Confidence 222211111111122222367889999875 567889999999865110 01111111111123445777777
Q ss_pred CCCcccccCCCccEEEEEeeCCCcEEEEEcC
Q 012007 423 DHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453 (473)
Q Consensus 423 ~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~ 453 (473)
. .+.+...|..|..|++.
T Consensus 324 ~-------------~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 324 N-------------AYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp E-------------EEEEETTTTEEEEEEHH
T ss_pred e-------------EEEcccccceEEEeccc
Confidence 5 78888899999999985
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.09 E-value=5.9e-08 Score=86.52 Aligned_cols=224 Identities=13% Similarity=0.076 Sum_probs=141.0
Q ss_pred cEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEE
Q 012007 163 LVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS 242 (473)
Q Consensus 163 ~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 242 (473)
.+..+++.|||+++++...+++|..|+..... .... .....+.+++
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~-~~~~---------------------------------~~~~~~~gla 74 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QIHA---------------------------------TVEGKVSGLA 74 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEEE---------------------------------ECSSEEEEEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE-EEEE---------------------------------cCCCCcceEE
Confidence 47789999999999999989999888865432 1111 1456788999
Q ss_pred EcCCCCEEEEEeCCCCEEEEEcCCCee-eEEe--ecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCc----ce
Q 012007 243 LNAEQGLLYSGSWDKTLKVWRISDCKC-LESI--NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGT----KH 314 (473)
Q Consensus 243 ~~~~~~~l~s~s~dg~v~vwd~~~~~~-~~~~--~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~----~~ 314 (473)
|+++|+++++...++.+..|+...... ...+ .......+.+.+.+++ ++++-+.++.+..++........ ..
T Consensus 75 ~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~ 154 (302)
T d2p4oa1 75 FTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPM 154 (302)
T ss_dssp ECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGG
T ss_pred EcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCc
Confidence 999999999988888888888754321 1111 1244567889999998 45555667777777765321000 00
Q ss_pred eeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccce---eecCcceEEEEEecCCEEEEEeCCCcEEE
Q 012007 315 CLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV---LRGHKMAVLCLAAAGNLVFSGSADRNICL 391 (473)
Q Consensus 315 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~l~s~~~dg~i~i 391 (473)
...............+.+.. +.++++.+..+.|..++.......... .......-+++..+|+++++...++.|..
T Consensus 155 ~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~ 233 (302)
T d2p4oa1 155 LARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVR 233 (302)
T ss_dssp GSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEE
T ss_pred cceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEE
Confidence 00011112223456677654 345666778888988887653222111 11222233677778998888888999999
Q ss_pred EecCCCCceeEEEEecCCCCceeEEEEe---cCCC
Q 012007 392 WRREESGAHSCLAVLTGHTGPVKCLAVE---EDRD 423 (473)
Q Consensus 392 wd~~~~~~~~~~~~~~~h~~~V~~l~~~---~~~~ 423 (473)
++.... ...+......-...++++|. +|++
T Consensus 234 i~p~G~--~~~~~~~~~~~~~pt~vafg~~~~D~~ 266 (302)
T d2p4oa1 234 IAPDRS--TTIIAQAEQGVIGSTAVAFGQTEGDCT 266 (302)
T ss_dssp ECTTCC--EEEEECGGGTCTTEEEEEECCSTTTTT
T ss_pred ECCCCC--EEEEEecCCCCCCceEEEEcCCCCCCC
Confidence 977642 23344444344557999994 5555
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.07 E-value=9.7e-09 Score=97.95 Aligned_cols=148 Identities=8% Similarity=0.020 Sum_probs=104.6
Q ss_pred EEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEc
Q 012007 165 KAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLN 244 (473)
Q Consensus 165 ~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 244 (473)
..+.|.+++.++.. .|+.|.+||+.+++.........+ ..|...|.++.|+
T Consensus 20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~---------------------------~~~~~~i~~~~~S 70 (470)
T d2bgra1 20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTF---------------------------DEFGHSINDYSIS 70 (470)
T ss_dssp CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTT---------------------------TTSSSCCCEEEEC
T ss_pred cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhh---------------------------hhccCccceeEEC
Confidence 35789999987764 578899999999876543321111 1266789999999
Q ss_pred CCCCEEEEEeC---------CCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcce
Q 012007 245 AEQGLLYSGSW---------DKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKH 314 (473)
Q Consensus 245 ~~~~~l~s~s~---------dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~ 314 (473)
||+++|+.++. ++.+.+||+.+++. ..+..+...+..+.|+|+| .++. ..++.+.+|+...+...
T Consensus 71 pDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~-~~~~~l~~~~~~~g~~~--- 145 (470)
T d2bgra1 71 PDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAY-VWNNDIYVKIEPNLPSY--- 145 (470)
T ss_dssp TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEE-EETTEEEEESSTTSCCE---
T ss_pred CCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeE-eecccceEEECCCCcee---
Confidence 99999998853 46789999998874 5577788899999999999 4444 56788999998643211
Q ss_pred eeee------ee---------ccCCccEEEEEEccCCCEEEEeCCCC
Q 012007 315 CLAQ------VL---------LKHENAVTALAVNQESAVVYCGSSDG 346 (473)
Q Consensus 315 ~~~~------~~---------~~~~~~v~~l~~~~~~~~l~~~~~dg 346 (473)
.... .. ....+....+.|+|||+.|+....|.
T Consensus 146 ~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~ 192 (470)
T d2bgra1 146 RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND 192 (470)
T ss_dssp ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred eeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecC
Confidence 0000 00 01223346688999999999876543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.04 E-value=6.2e-07 Score=78.67 Aligned_cols=244 Identities=10% Similarity=0.114 Sum_probs=148.1
Q ss_pred cEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEE
Q 012007 163 LVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS 242 (473)
Q Consensus 163 ~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 242 (473)
....|+++++|+.+++-..+..|++||.+. +............ +....-..++
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G-~~~~~~~~~~~~~--------------------------~~~~~p~~~~ 76 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGKRD--------------------------SQLLYPNRVA 76 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSSST--------------------------TCBSSEEEEE
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCCC-CEEEEecccCCCc--------------------------cccccccccc
Confidence 468999999998887777788999999763 3322221110000 0111233455
Q ss_pred EcCCC-CEEEEE-eCCCCEEEEEcCCCeeeEEee-cCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeee
Q 012007 243 LNAEQ-GLLYSG-SWDKTLKVWRISDCKCLESIN-AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQ 318 (473)
Q Consensus 243 ~~~~~-~~l~s~-s~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 318 (473)
+..+. ..+++. +.++.|.+++. .++....+. ........+++.+++ ++++....+.+.+++... ......
T Consensus 77 ~~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-----~~~~~~ 150 (279)
T d1q7fa_ 77 VVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-----NVLHKF 150 (279)
T ss_dssp EETTTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-----CEEEEE
T ss_pred ccccccccceeccCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-----ceeecc
Confidence 54543 334333 33456666664 566666553 234566788888887 455555566788877541 111111
Q ss_pred eeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceE--EEEEecCCEEEEEeC-CCcEEEEecC
Q 012007 319 VLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSA-DRNICLWRRE 395 (473)
Q Consensus 319 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~~-dg~i~iwd~~ 395 (473)
....+......+++.++++++++....+.|++||.........-..+..... .++.++|+++++-.. ++.|.+|+..
T Consensus 151 g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~ 230 (279)
T d1q7fa_ 151 GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD 230 (279)
T ss_dssp ECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred cccccccccceeeeccceeEEeeeccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC
Confidence 1234566788999999999988888899999999765322110011122222 455667887777543 4579999865
Q ss_pred CCCceeEEEEec--CCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCCC
Q 012007 396 ESGAHSCLAVLT--GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAP 457 (473)
Q Consensus 396 ~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~~ 457 (473)
. +.+..+. ........|++.+++. +++ ++.++.|++|+.....|
T Consensus 231 G----~~~~~~~~~~~~~~p~~vav~~dG~-------------l~V-~~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 231 G----QLISALESKVKHAQCFDVALMDDGS-------------VVL-ASKDYRLYIYRYVQLAP 276 (279)
T ss_dssp S----CEEEEEEESSCCSCEEEEEEETTTE-------------EEE-EETTTEEEEEECSCCCC
T ss_pred C----CEEEEEeCCCCCCCEeEEEEeCCCc-------------EEE-EeCCCeEEEEEeeeecC
Confidence 3 3444432 2234578999999986 444 55789999999987754
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.96 E-value=8.6e-08 Score=83.37 Aligned_cols=229 Identities=7% Similarity=0.012 Sum_probs=135.9
Q ss_pred EEEecCCEEEE-eeCCCcEEEeeCCcccccccc--CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccc
Q 012007 128 SLAASGDLLYT-GSDSKNIRVWKNLKEFSGFKS--NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSL 204 (473)
Q Consensus 128 ~~~~~g~~l~t-g~~dg~i~vwd~~~~~~~~~~--h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 204 (473)
++..+|++.++ .+..+.|..++.......... -......|+++++++++++....+.+++++-.+..... ..
T Consensus 20 avd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~--~~--- 94 (260)
T d1rwia_ 20 AVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVL--PF--- 94 (260)
T ss_dssp EECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEEC--CC---
T ss_pred EEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeee--ee---
Confidence 44455775554 455677777765533222211 12345788999999887776666666666544332211 00
Q ss_pred cccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEE
Q 012007 205 PTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284 (473)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~ 284 (473)
.......++++.++++++++-..+..+..++...................++
T Consensus 95 ----------------------------~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~ 146 (260)
T d1rwia_ 95 ----------------------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVA 146 (260)
T ss_dssp ----------------------------CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEE
T ss_pred ----------------------------eeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceee
Confidence 1234567899999998877766666677777654332222222234557888
Q ss_pred EcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCccccccee
Q 012007 285 AGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVL 363 (473)
Q Consensus 285 ~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 363 (473)
+.+++ ++++...++.|..++..... ..............|++.++++++++....+.|..++...........
T Consensus 147 ~~~~g~~~v~~~~~~~i~~~d~~~~~------~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~ 220 (260)
T d1rwia_ 147 VDNSGNVYVTDTDNNRVVKLEAESNN------QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPF 220 (260)
T ss_dssp ECTTCCEEEEEGGGTEEEEECTTTCC------EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCC
T ss_pred ecCCCCEeeeccccccccccccccce------eeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEcc
Confidence 88887 55666777889999876321 111222344567899999999998888888999988876432211111
Q ss_pred ec-CcceEEEEEecCCEEEEEeCCCcEEEEecC
Q 012007 364 RG-HKMAVLCLAAAGNLVFSGSADRNICLWRRE 395 (473)
Q Consensus 364 ~~-~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~ 395 (473)
.+ ....-+++..+|+++++-..++.|+.++..
T Consensus 221 ~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~ 253 (260)
T d1rwia_ 221 TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 253 (260)
T ss_dssp CSCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred CCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence 11 112234455567777776666766666543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.95 E-value=1e-07 Score=82.91 Aligned_cols=233 Identities=10% Similarity=0.041 Sum_probs=139.2
Q ss_pred cEEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE
Q 012007 163 LVKAIIISGDSNKIFTG-HQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL 241 (473)
Q Consensus 163 ~V~~l~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 241 (473)
.-..|++.++|+..++. +..+.|..++........... .-......+
T Consensus 15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~--------------------------------~~~~~p~gv 62 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPF--------------------------------NGLYQPQGL 62 (260)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCC--------------------------------CSCCSCCCE
T ss_pred CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEecc--------------------------------CCccCceEE
Confidence 45799999999866654 455777777665443211110 112335678
Q ss_pred EEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeee
Q 012007 242 SLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVL 320 (473)
Q Consensus 242 ~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 320 (473)
+++++++++++....+.+++++-.+...+.... ......++++.+++ ++++-..+..+..++..... .....
T Consensus 63 av~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~------~~~~~ 135 (260)
T d1rwia_ 63 AVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT------QTVLP 135 (260)
T ss_dssp EECTTCCEEEEETTTEEEEECTTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSS------CEECC
T ss_pred EEcCCCCEEEeeeeeceeeeeeeccceeeeeee-eeeecccccccccceeEeeccccccccccccccce------eeeee
Confidence 899999887776666666666555554443332 23456889998887 44444455666666654211 01111
Q ss_pred ccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceeecCcceE--EEEEecCCEEEEEeCCCcEEEEecCCCC
Q 012007 321 LKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSADRNICLWRREESG 398 (473)
Q Consensus 321 ~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 398 (473)
.........+++.++++++++...++.|..+|.......... ....... +++.++|+++++....+.|..++.....
T Consensus 136 ~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~-~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~ 214 (260)
T d1rwia_ 136 FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP-FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT 214 (260)
T ss_dssp CCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC-CSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC
T ss_pred ecccCCcceeeecCCCCEeeeccccccccccccccceeeeee-ccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe
Confidence 112234578999999998888888899999998754322111 1222222 4455668888888888889888876521
Q ss_pred ceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEE
Q 012007 399 AHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451 (473)
Q Consensus 399 ~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~ 451 (473)
..+ .....-.....|++++++. ++++-..+++|+..+
T Consensus 215 --~~~-~~~~~~~~P~~i~~d~~g~-------------l~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 215 --STV-LPFTGLNTPLAVAVDSDRT-------------VYVADRGNDRVVKLT 251 (260)
T ss_dssp --CEE-CCCCSCCCEEEEEECTTCC-------------EEEEEGGGTEEEEEC
T ss_pred --EEE-EccCCCCCeEEEEEeCCCC-------------EEEEECCCCEEEEEe
Confidence 111 1112234568999999987 777766666665444
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.87 E-value=3.5e-06 Score=75.24 Aligned_cols=218 Identities=10% Similarity=0.083 Sum_probs=131.8
Q ss_pred cEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEE
Q 012007 163 LVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS 242 (473)
Q Consensus 163 ~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 242 (473)
.+..++|.++|++.++-...+.|..|+.++........ ........|+
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~--------------------------------~~~~~p~gla 88 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV--------------------------------SHKANPAAIK 88 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE--------------------------------CSSSSEEEEE
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEe--------------------------------CCCCCeeEEE
Confidence 34678999999877777778899989887765332221 1334567899
Q ss_pred EcCCCCEEEEEeCC----CCEEEEEcCCCeeeEEeec--CCCceeEEEEcCCCEEEEEeCCC-------cEEEEeCcccC
Q 012007 243 LNAEQGLLYSGSWD----KTLKVWRISDCKCLESINA--HDDAINSVVAGFDSLVFTGSADG-------TVKVWRRELQG 309 (473)
Q Consensus 243 ~~~~~~~l~s~s~d----g~v~vwd~~~~~~~~~~~~--~~~~v~~l~~~~~~~l~s~~~dg-------~i~vwd~~~~~ 309 (473)
++++|+++++...+ +.|...+............ .....+.+.+.+++.++.+...+ .+..++.. .
T Consensus 89 ~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d--g 166 (319)
T d2dg1a1 89 IHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD--F 166 (319)
T ss_dssp ECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT--S
T ss_pred ECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecc--c
Confidence 99999877765432 2344445444443333321 23356788899998666554332 24444332 1
Q ss_pred CCcceeeeeeeccCCccEEEEEEccCCCEEE-EeCCCCcEEEEecCCccccccee--------ecCcc-eEEEEEecCCE
Q 012007 310 KGTKHCLAQVLLKHENAVTALAVNQESAVVY-CGSSDGLVNFWECEKHLSHGGVL--------RGHKM-AVLCLAAAGNL 379 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~-~v~~~~~~~~~ 379 (473)
. ....+...-...+.|+|+|+++.|+ +-+..+.|..||+.......... .+... .-+++..+|++
T Consensus 167 ~-----~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l 241 (319)
T d2dg1a1 167 R-----TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNL 241 (319)
T ss_dssp C-----CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCE
T ss_pred c-----eeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCE
Confidence 1 1111112223457899999998664 44667899999886432211111 11111 12555667998
Q ss_pred EEEEeCCCcEEEEecCCCCceeEEEEec------CCCCceeEEEEecCCC
Q 012007 380 VFSGSADRNICLWRREESGAHSCLAVLT------GHTGPVKCLAVEEDRD 423 (473)
Q Consensus 380 l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~h~~~V~~l~~~~~~~ 423 (473)
.++....+.|.+|+... +.+..+. ++...+++++|.++..
T Consensus 242 ~Va~~~~g~V~~~~p~G----~~l~~i~~P~~~~~~~~~~~~~~~~~~~~ 287 (319)
T d2dg1a1 242 YVAMYGQGRVLVFNKRG----YPIGQILIPGRDEGHMLRSTHPQFIPGTN 287 (319)
T ss_dssp EEEEETTTEEEEECTTS----CEEEEEECTTGGGTCSCBCCEEEECTTSC
T ss_pred EEEEcCCCEEEEECCCC----cEEEEEeCCCcCCCcCceeeeEEEeCCCC
Confidence 88888899999999653 3444332 3455688999998776
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.85 E-value=2.5e-06 Score=74.65 Aligned_cols=229 Identities=12% Similarity=0.138 Sum_probs=141.0
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCCcc-ccccc------cCcccEEEEEEeCCC-CEEEEE-eCCCeEEEEeCCCCCeeeE
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNLKE-FSGFK------SNSGLVKAIIISGDS-NKIFTG-HQDGKIRIWKVSRKNASVH 198 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~~~-~~~~~------~h~~~V~~l~~s~~~-~~l~s~-~~dg~i~vwd~~~~~~~~~ 198 (473)
++.++|+++++-..+..|++||.... +..+. +....-..+++..+. .++++. +.++.|.+++.... ....
T Consensus 29 avd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~-~~~~ 107 (279)
T d1q7fa_ 29 AVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQ-FVRK 107 (279)
T ss_dssp EECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSC-EEEE
T ss_pred EEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccccc-ceee
Confidence 45567888887777889999986532 22221 112234556665554 344433 34457777765432 2111
Q ss_pred EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee--cC
Q 012007 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN--AH 276 (473)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~ 276 (473)
... ........+++.+++.++++....+.+.+++. +++.+..+. .+
T Consensus 108 ~~~-------------------------------~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~ 155 (279)
T d1q7fa_ 108 FGA-------------------------------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKH 155 (279)
T ss_dssp ECT-------------------------------TTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTT
T ss_pred cCC-------------------------------CcccccceeccccCCcEEEEeeccceeeEecc-CCceeeccccccc
Confidence 110 13455678999999998888777778888885 566666653 35
Q ss_pred CCceeEEEEcCCC-EEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCC-CCcEEEEecC
Q 012007 277 DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS-DGLVNFWECE 354 (473)
Q Consensus 277 ~~~v~~l~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~iwd~~ 354 (473)
......+++.+++ .+++....+.|++||... ......-..+.......|++.++|+++++-.. ++.|.+|+..
T Consensus 156 ~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G-----~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~ 230 (279)
T d1q7fa_ 156 LEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD 230 (279)
T ss_dssp CSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred ccccceeeeccceeEEeeeccccceeeeecCC-----ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC
Confidence 5677888888887 566667788999998752 11111111234556789999999997777543 4579999865
Q ss_pred Cccccccee---ecCcceEEEEEecCCEEEEEeCCCcEEEEecCC
Q 012007 355 KHLSHGGVL---RGHKMAVLCLAAAGNLVFSGSADRNICLWRREE 396 (473)
Q Consensus 355 ~~~~~~~~~---~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 396 (473)
.. ...... ......-.++.++|.+++ +..++.|++|+...
T Consensus 231 G~-~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~ 273 (279)
T d1q7fa_ 231 GQ-LISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQ 273 (279)
T ss_dssp SC-EEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSC
T ss_pred CC-EEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeee
Confidence 32 111111 112233456777886555 55789999999876
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.84 E-value=1.3e-06 Score=79.75 Aligned_cols=254 Identities=11% Similarity=0.041 Sum_probs=138.9
Q ss_pred EEEEEecCCEEEEeeCCCcEEEeeCCc--cccccc--cCcccEEEEEEeCCCCEEE--EEe-CCCeEEEEeCCCCCe-ee
Q 012007 126 IYSLAASGDLLYTGSDSKNIRVWKNLK--EFSGFK--SNSGLVKAIIISGDSNKIF--TGH-QDGKIRIWKVSRKNA-SV 197 (473)
Q Consensus 126 V~~~~~~g~~l~tg~~dg~i~vwd~~~--~~~~~~--~h~~~V~~l~~s~~~~~l~--s~~-~dg~i~vwd~~~~~~-~~ 197 (473)
-.++++++++|++... +.+..|.... .+.... ........++++++++.++ ++. ..+.|..+.+..... ..
T Consensus 44 ~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~ 122 (365)
T d1jofa_ 44 WMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGN 122 (365)
T ss_dssp EEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEE
T ss_pred EEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcce
Confidence 3567778988888765 4677775331 121111 1123455677888887543 332 245666665433221 11
Q ss_pred EEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC-CCCEEEEEcCC-Ceee--EEe
Q 012007 198 HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISD-CKCL--ESI 273 (473)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg~v~vwd~~~-~~~~--~~~ 273 (473)
............ ............+.++.|+|+|+++++++. ...|.+|+... +... ...
T Consensus 123 ~~~~~~~~~~~~----------------~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~ 186 (365)
T d1jofa_ 123 VFSVSETGKLEK----------------NVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSV 186 (365)
T ss_dssp EEEECTTCCEEE----------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEE
T ss_pred eEeeeecceecC----------------cccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccce
Confidence 111111000000 000001113345789999999999988874 34688887653 3221 222
Q ss_pred e--cCCCceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeeee-------------eeccCCccEEEEEEccCC
Q 012007 274 N--AHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQ-------------VLLKHENAVTALAVNQES 336 (473)
Q Consensus 274 ~--~~~~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-------------~~~~~~~~v~~l~~~~~~ 336 (473)
. ........++++|++ ..++...+++|.+|++............. ....+......+.++|+|
T Consensus 187 ~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG 266 (365)
T d1jofa_ 187 DAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG 266 (365)
T ss_dssp ECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS
T ss_pred eecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCC
Confidence 1 234577889999998 44566678999999986433211111000 011223346789999999
Q ss_pred CEEEEeCC------CCcEEEEecCCccccccee-------ecCcceEEEEEe-cCCEEEEE-eCCCcEEEEecCC
Q 012007 337 AVVYCGSS------DGLVNFWECEKHLSHGGVL-------RGHKMAVLCLAA-AGNLVFSG-SADRNICLWRREE 396 (473)
Q Consensus 337 ~~l~~~~~------dg~i~iwd~~~~~~~~~~~-------~~~~~~v~~~~~-~~~~l~s~-~~dg~i~iwd~~~ 396 (473)
++|+++.. .+.|..|++.......... .+....-..+++ +|++|+++ ..++.|.+|+++.
T Consensus 267 ~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~ 341 (365)
T d1jofa_ 267 KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred CEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence 99988742 2347777765422211111 111122355666 68877666 5678999999876
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.72 E-value=1.8e-05 Score=68.35 Aligned_cols=200 Identities=8% Similarity=0.052 Sum_probs=112.4
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCCC---CEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-E-EEEEeCCCcEEEEeCccc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWDK---TLKVWRISDCKCLESINAHDDAINSVVAGFDS-L-VFTGSADGTVKVWRRELQ 308 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~dg---~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~-l~s~~~dg~i~vwd~~~~ 308 (473)
+...+..-+|+|||+.||-..... .+.+.+...+.. ..+..+........|+|++ . ++....++...++.....
T Consensus 37 ~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~ 115 (269)
T d2hqsa1 37 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 115 (269)
T ss_dssp ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCccceeecccc
Confidence 566778899999999998775443 366667665554 3444567788889999998 3 334444444444433211
Q ss_pred CCCcceeeeeeeccCCccEEEEEEccCCCE-EEEeCCCCcE--EEEecCCcccccceeecCcce--EEEEEecCCEEEEE
Q 012007 309 GKGTKHCLAQVLLKHENAVTALAVNQESAV-VYCGSSDGLV--NFWECEKHLSHGGVLRGHKMA--VLCLAAAGNLVFSG 383 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~~~dg~i--~iwd~~~~~~~~~~~~~~~~~--v~~~~~~~~~l~s~ 383 (473)
. .................+++++.. +++...+|.. .+.++...... ........ ...++++++.++..
T Consensus 116 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~spdg~~~~~~ 188 (269)
T d2hqsa1 116 S-----GQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ--RITWEGSQNQDADVSSDGKFMVMV 188 (269)
T ss_dssp T-----CCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE--ECCCSSSEEEEEEECTTSSEEEEE
T ss_pred c-----ccceeeeeccccccccccccccccceecccccCCceEeeeecccccce--eeecccccccccccccccceeEEE
Confidence 1 111222233444455667776654 4444555654 44455443222 22222222 34567788887776
Q ss_pred eCC-CcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeC--CCcEEEEEcCCCC
Q 012007 384 SAD-RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSL--DKSVKVWRVSEHA 456 (473)
Q Consensus 384 ~~d-g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~--Dg~v~iW~i~~~~ 456 (473)
+.+ +...+|...... .. . ....+........|+||++. ++++... ...|.+|++....
T Consensus 189 ~~~~~~~~i~~~~~~~-~~-~-~~~~~~~~~~~p~~SPDG~~------------i~f~s~~~~~~~l~~~~~dg~~ 249 (269)
T d2hqsa1 189 SSNGGQQHIAKQDLAT-GG-V-QVLSSTFLDETPSLAPNGTM------------VIYSSSQGMGSVLNLVSTDGRF 249 (269)
T ss_dssp EECSSCEEEEEEETTT-CC-E-EECCCSSSCEEEEECTTSSE------------EEEEEEETTEEEEEEEETTSCC
T ss_pred eecCCceeeeEeeccc-cc-c-eEeecCccccceEECCCCCE------------EEEEEcCCCCcEEEEEECCCCC
Confidence 544 444444443321 11 2 22334566788899999983 3343332 3457888887654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.72 E-value=6.1e-06 Score=73.36 Aligned_cols=239 Identities=8% Similarity=0.082 Sum_probs=137.9
Q ss_pred EEEecCCEEEEeeC-------CCcEEEeeCCcccccc-cc-----CcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC
Q 012007 128 SLAASGDLLYTGSD-------SKNIRVWKNLKEFSGF-KS-----NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKN 194 (473)
Q Consensus 128 ~~~~~g~~l~tg~~-------dg~i~vwd~~~~~~~~-~~-----h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~ 194 (473)
++.++|++.++... +|.|..||........ .. ..+.-..++|.++++.|+++...+.|...+.+...
T Consensus 24 a~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~ 103 (314)
T d1pjxa_ 24 VFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTF 103 (314)
T ss_dssp EECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTSCE
T ss_pred EEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCcE
Confidence 44566876665432 4678888865332221 11 12335789999999988888877778888876553
Q ss_pred eeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC---------------CCCE
Q 012007 195 ASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW---------------DKTL 259 (473)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~---------------dg~v 259 (473)
.........- ..-...+.+++.++|++.++-.. +|.|
T Consensus 104 ~~~~~~~~~g----------------------------~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v 155 (314)
T d1pjxa_ 104 EEIAKKDSEG----------------------------RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSI 155 (314)
T ss_dssp EECCSBCTTS----------------------------CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred EEEEeccccc----------------------------cccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceE
Confidence 2211110000 01123577889999987766421 2234
Q ss_pred EEEEcCCCeeeEEeecCCCceeEEEEcCCC------EEEEEeCCCcEEEEeCcccCCCcceeeeeeec-cCCccEEEEEE
Q 012007 260 KVWRISDCKCLESINAHDDAINSVVAGFDS------LVFTGSADGTVKVWRRELQGKGTKHCLAQVLL-KHENAVTALAV 332 (473)
Q Consensus 260 ~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~------~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~ 332 (473)
..++. .++..... ..-..-+.+++++++ ++++-+..+.|..||+..............+. ......-.|++
T Consensus 156 ~~~~~-dg~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiav 233 (314)
T d1pjxa_ 156 YCFTT-DGQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF 233 (314)
T ss_dssp EEECT-TSCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE
T ss_pred EEEee-cCceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEE
Confidence 44433 33333222 223344678887653 44455678889988876433211111111221 22334678999
Q ss_pred ccCCCEEEEeCCCCcEEEEecCCcccccceeecCcce--EEEEEecCC-EEEEEeCCCcEEEEecCCC
Q 012007 333 NQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMA--VLCLAAAGN-LVFSGSADRNICLWRREES 397 (473)
Q Consensus 333 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--v~~~~~~~~-~l~s~~~dg~i~iwd~~~~ 397 (473)
..+|++.++....+.|.+||.+.+... ..+...... .++|.++++ ++++.+.+|.|..+++...
T Consensus 234 D~~GnlyVa~~~~g~I~~~dp~~g~~~-~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~ 300 (314)
T d1pjxa_ 234 DEDNNLLVANWGSSHIEVFGPDGGQPK-MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp BTTCCEEEEEETTTEEEEECTTCBSCS-EEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred ecCCcEEEEEcCCCEEEEEeCCCCEEE-EEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence 999998888778899999998765433 233322223 345555665 5566677788888887653
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.53 E-value=0.00012 Score=64.92 Aligned_cols=195 Identities=13% Similarity=0.074 Sum_probs=117.3
Q ss_pred EecCCEEEEeeCCCcEEEeeCCcc--ccccccCcccEEEEEEeCCCCEEEEEeCC----CeEEEEeCCCCCeeeEEeecc
Q 012007 130 AASGDLLYTGSDSKNIRVWKNLKE--FSGFKSNSGLVKAIIISGDSNKIFTGHQD----GKIRIWKVSRKNASVHKRVGS 203 (473)
Q Consensus 130 ~~~g~~l~tg~~dg~i~vwd~~~~--~~~~~~h~~~V~~l~~s~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~ 203 (473)
..+|++.++-..++.|..|+.... ...+.........|++.+||+++++...+ +.|...+........... .
T Consensus 48 D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~--~ 125 (319)
T d2dg1a1 48 DRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE--D 125 (319)
T ss_dssp CTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC--S
T ss_pred CCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeecc--C
Confidence 345887777778899988886532 23333455678899999999877765432 334444444433221111 0
Q ss_pred ccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC------CCEEEEEcCCCeeeEEeecCC
Q 012007 204 LPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD------KTLKVWRISDCKCLESINAHD 277 (473)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d------g~v~vwd~~~~~~~~~~~~~~ 277 (473)
. .-......+++.++|++.++.... +.+..++.. ++.+..+...-
T Consensus 126 ~----------------------------~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~~~~ 176 (319)
T d2dg1a1 126 L----------------------------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPIIQNI 176 (319)
T ss_dssp S----------------------------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEEEEEE
T ss_pred C----------------------------CcccCCcceeEEeccceeecccccccccCcceeEEEecc-cceeEEEeecc
Confidence 0 012346788999999866554321 224444433 33333333333
Q ss_pred CceeEEEEcCCC--EEEEEeCCCcEEEEeCcccCCCcceeee--eeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEec
Q 012007 278 DAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLA--QVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWEC 353 (473)
Q Consensus 278 ~~v~~l~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~ 353 (473)
...+.++|++++ ++++-+..+.|..|++............ ............|++..+|++.++....+.|.+||.
T Consensus 177 ~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p 256 (319)
T d2dg1a1 177 SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK 256 (319)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred ceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC
Confidence 456789999987 4456677889999988643321111111 111122234678999999998888888999999996
Q ss_pred CC
Q 012007 354 EK 355 (473)
Q Consensus 354 ~~ 355 (473)
..
T Consensus 257 ~G 258 (319)
T d2dg1a1 257 RG 258 (319)
T ss_dssp TS
T ss_pred CC
Confidence 53
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.52 E-value=6.2e-05 Score=65.96 Aligned_cols=211 Identities=9% Similarity=0.007 Sum_probs=131.7
Q ss_pred CCEEEEeeCCCcEEEeeCCccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEe
Q 012007 133 GDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVK 212 (473)
Q Consensus 133 g~~l~tg~~dg~i~vwd~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 212 (473)
+.+..+--..+.|..||..............+.++++.++|+++++ +.+ .|.++|..+++..........
T Consensus 30 ~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~-------- 99 (295)
T d2ghsa1 30 GTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESD-------- 99 (295)
T ss_dssp TEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTT--------
T ss_pred CEEEEEECCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecC--------
Confidence 4455554456778888866443333334567889999999876665 455 588999988865433221110
Q ss_pred ecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeC----CCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC
Q 012007 213 SSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSW----DKTLKVWRISDCKCLESINAHDDAINSVVAGFD 288 (473)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~----dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~ 288 (473)
.....++.+.+.++|++.++... .+.-.+|.+..++...... .-..-+.++++++
T Consensus 100 --------------------~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d 158 (295)
T d2ghsa1 100 --------------------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPD 158 (295)
T ss_dssp --------------------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTT
T ss_pred --------------------CCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCC
Confidence 02235778889999986665432 2345677777776554443 2335678899988
Q ss_pred C--EEEEEeCCCcEEEEeCcccCCC--cceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccceee
Q 012007 289 S--LVFTGSADGTVKVWRRELQGKG--TKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLR 364 (473)
Q Consensus 289 ~--~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 364 (473)
+ ++++-+..+.|..|++...... ..................+++..+|++.++.-..+.|..||... .... .+.
T Consensus 159 ~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G-~~~~-~i~ 236 (295)
T d2ghsa1 159 GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG-NHIA-RYE 236 (295)
T ss_dssp SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC-CEEE-EEE
T ss_pred CceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCC-cEee-Eec
Confidence 7 5667777889999987532211 11112223334456688999999999888777788999999754 3332 222
Q ss_pred cCcceEEEEEec
Q 012007 365 GHKMAVLCLAAA 376 (473)
Q Consensus 365 ~~~~~v~~~~~~ 376 (473)
--...++++++.
T Consensus 237 lP~~~~T~~~FG 248 (295)
T d2ghsa1 237 VPGKQTTCPAFI 248 (295)
T ss_dssp CSCSBEEEEEEE
T ss_pred CCCCceEEEEEe
Confidence 222345666653
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=1.6e-05 Score=74.69 Aligned_cols=70 Identities=7% Similarity=-0.036 Sum_probs=48.1
Q ss_pred EEEEEecCCEEEEee---------CCCcEEEeeCCcc----ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q 012007 126 IYSLAASGDLLYTGS---------DSKNIRVWKNLKE----FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSR 192 (473)
Q Consensus 126 V~~~~~~g~~l~tg~---------~dg~i~vwd~~~~----~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~ 192 (473)
-+.+++||++|+.+. ..+.+.++|+... +.......+.+....|||||+.||-.. ++.|.+.+..+
T Consensus 65 ~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~ 143 (465)
T d1xfda1 65 RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVG 143 (465)
T ss_dssp EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSS
T ss_pred eeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCC
Confidence 456888999877764 3467778886532 222223345667789999999998765 56788888877
Q ss_pred CCee
Q 012007 193 KNAS 196 (473)
Q Consensus 193 ~~~~ 196 (473)
+...
T Consensus 144 ~~~~ 147 (465)
T d1xfda1 144 KQAI 147 (465)
T ss_dssp SCCE
T ss_pred CceE
Confidence 6543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.47 E-value=0.00029 Score=61.55 Aligned_cols=211 Identities=10% Similarity=0.051 Sum_probs=126.7
Q ss_pred EEEEeCCCCEE-EEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEc
Q 012007 166 AIIISGDSNKI-FTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLN 244 (473)
Q Consensus 166 ~l~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 244 (473)
...|.+....| .+=-..+.|..||..+++.... . ....+.++++.
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~-~---------------------------------~~~~~~~i~~~ 67 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKTVH-A---------------------------------LPFMGSALAKI 67 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-E---------------------------------CSSCEEEEEEE
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEEEE-E---------------------------------CCCCcEEEEEe
Confidence 45677654444 4434567899999887753221 1 34467889998
Q ss_pred CCCCEEEEEeCCCCEEEEEcCCCeeeEEeec----CCCceeEEEEcCCCEEEEEeC-----CCcEEEEeCcccCCCccee
Q 012007 245 AEQGLLYSGSWDKTLKVWRISDCKCLESINA----HDDAINSVVAGFDSLVFTGSA-----DGTVKVWRRELQGKGTKHC 315 (473)
Q Consensus 245 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~----~~~~v~~l~~~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~ 315 (473)
+++.++++ +.+ .|.++|..+++....... ....++.+.+.++|.+..++. .+.-.+|.+..+.
T Consensus 68 ~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~------ 139 (295)
T d2ghsa1 68 SDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK------ 139 (295)
T ss_dssp ETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE------
T ss_pred cCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCc------
Confidence 88876654 544 589999988875433321 123578888999985555543 2344556553211
Q ss_pred eeeeeccCCccEEEEEEccCCCEE-EEeCCCCcEEEEecCCcccc----cce---eecCcceE--EEEEecCCEEEEEeC
Q 012007 316 LAQVLLKHENAVTALAVNQESAVV-YCGSSDGLVNFWECEKHLSH----GGV---LRGHKMAV--LCLAAAGNLVFSGSA 385 (473)
Q Consensus 316 ~~~~~~~~~~~v~~l~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~----~~~---~~~~~~~v--~~~~~~~~~l~s~~~ 385 (473)
. ..+...-.....++|+++++.+ ++-+..+.|..|++...... ... ..+..... +++..+|++.++.-.
T Consensus 140 ~-~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~ 218 (295)
T d2ghsa1 140 V-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG 218 (295)
T ss_dssp E-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET
T ss_pred E-EEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeC
Confidence 1 1111223345789999999865 45566788998887532111 111 11122223 344456887777777
Q ss_pred CCcEEEEecCCCCceeEEEEecCCCCceeEEEEe-cCCC
Q 012007 386 DRNICLWRREESGAHSCLAVLTGHTGPVKCLAVE-EDRD 423 (473)
Q Consensus 386 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~~ 423 (473)
.+.|..||... +.+..+.--...+++++|- ++.+
T Consensus 219 ~g~V~~~dp~G----~~~~~i~lP~~~~T~~~FGG~d~~ 253 (295)
T d2ghsa1 219 EGAVDRYDTDG----NHIARYEVPGKQTTCPAFIGPDAS 253 (295)
T ss_dssp TTEEEEECTTC----CEEEEEECSCSBEEEEEEESTTSC
T ss_pred CCceEEecCCC----cEeeEecCCCCceEEEEEeCCCCC
Confidence 88899999654 4555555444568999997 4544
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=8.6e-06 Score=76.62 Aligned_cols=132 Identities=11% Similarity=0.035 Sum_probs=79.7
Q ss_pred CCCcEEEeeCCcccc-c-c---ccCcccEEEEEEeCCCCEEEEEeC---------CCeEEEEeCCCCCeeeEEeeccccc
Q 012007 141 DSKNIRVWKNLKEFS-G-F---KSNSGLVKAIIISGDSNKIFTGHQ---------DGKIRIWKVSRKNASVHKRVGSLPT 206 (473)
Q Consensus 141 ~dg~i~vwd~~~~~~-~-~---~~h~~~V~~l~~s~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~ 206 (473)
.+|.|.+||...... . + ....-.+....|+||+++|+.... .+.+.++|+.++.........
T Consensus 35 ~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~---- 110 (465)
T d1xfda1 35 QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPE---- 110 (465)
T ss_dssp SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTT----
T ss_pred CCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCcc----
Confidence 456788887542111 1 1 112335778889999999887643 467888898877643221111
Q ss_pred cceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeec-CCC-------
Q 012007 207 FKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA-HDD------- 278 (473)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~------- 278 (473)
.....+....|+|+|+.||-.. ++.|.+.+...+..++.... ...
T Consensus 111 --------------------------~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~ 163 (465)
T d1xfda1 111 --------------------------VSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLS 163 (465)
T ss_dssp --------------------------CCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEEC
T ss_pred --------------------------CCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeecccc
Confidence 0233455678999999988876 57788888877665544421 111
Q ss_pred ----------ceeEEEEcCCC-EEEEEe-CCCcEEEE
Q 012007 279 ----------AINSVVAGFDS-LVFTGS-ADGTVKVW 303 (473)
Q Consensus 279 ----------~v~~l~~~~~~-~l~s~~-~dg~i~vw 303 (473)
.-.++.|+|++ .|+... .+..+..+
T Consensus 164 d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~ 200 (465)
T d1xfda1 164 DWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIM 200 (465)
T ss_dssp CHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEE
T ss_pred chhhhhhhccccceEEECCCCCeEEEEEeccccccee
Confidence 12467799998 554433 34444444
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.30 E-value=0.00022 Score=61.42 Aligned_cols=230 Identities=8% Similarity=-0.004 Sum_probs=121.7
Q ss_pred EEEec--CCEEEEeeCCCcEEEeeCC-ccccccccCcccEEEEEEeCCCCEEEEEeC-C-----CeEEEEeCCCCCeeeE
Q 012007 128 SLAAS--GDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIISGDSNKIFTGHQ-D-----GKIRIWKVSRKNASVH 198 (473)
Q Consensus 128 ~~~~~--g~~l~tg~~dg~i~vwd~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-d-----g~i~vwd~~~~~~~~~ 198 (473)
.++|| |+.+|-.+. |.|.+.|+. .....+..+.+.+...+|||||++||-... + ..|.+++..+++....
T Consensus 5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l 83 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI 83 (281)
T ss_dssp CEEEEEETTEEEEEET-TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred ccCCCCCCCEEEEEeC-CcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence 36788 998776654 567777866 344556667788999999999999886542 2 2367777766654322
Q ss_pred EeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC------CCEEEEEcCCCeeeEE
Q 012007 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD------KTLKVWRISDCKCLES 272 (473)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d------g~v~vwd~~~~~~~~~ 272 (473)
.... ..............|+|+++.|+..... ..+...+...+.....
T Consensus 84 t~~~--------------------------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (281)
T d1k32a2 84 TYFS--------------------------GKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL 137 (281)
T ss_dssp CCCC--------------------------EEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC
T ss_pred eecC--------------------------CCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe
Confidence 1100 0000122345678899999988876432 2245555554443222
Q ss_pred eecCCCceeEEEEcCCCEE-EEEeCCCc-----------EEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEE
Q 012007 273 INAHDDAINSVVAGFDSLV-FTGSADGT-----------VKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVY 340 (473)
Q Consensus 273 ~~~~~~~v~~l~~~~~~~l-~s~~~dg~-----------i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 340 (473)
+........+.+++.+ +....+.. ..+.... ... ...............+.++. .+.
T Consensus 138 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~-~~~ 206 (281)
T d1k32a2 138 ---NLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVN------SGA-FKKIVDMSTHVSSPVIVGHR-IYF 206 (281)
T ss_dssp ---CSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEE------TTE-EEEEECCSSCCEEEEEETTE-EEE
T ss_pred ---cCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeecc------ccc-eeeccCCccccceeeeeccc-cce
Confidence 2222333333333322 22221110 1111110 000 11111222333444555543 333
Q ss_pred EeCCC--CcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCC
Q 012007 341 CGSSD--GLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREES 397 (473)
Q Consensus 341 ~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~ 397 (473)
....+ ..|.++|+.+.... .........+..+++||+.|+-.. ++.|+++|+.++
T Consensus 207 ~~~~~~~~~l~~~d~~g~~~~-~lt~~~~~~~~~~SpDG~~I~f~~-~~~l~~~d~~~g 263 (281)
T d1k32a2 207 ITDIDGFGQIYSTDLDGKDLR-KHTSFTDYYPRHLNTDGRRILFSK-GGSIYIFNPDTE 263 (281)
T ss_dssp EECTTSSCEEEEEETTSCSCE-ECCCCCSSCEEEEEESSSCEEEEE-TTEEEEECTTTC
T ss_pred ecccccccceEEEeCCCCceE-EeecCCCcccccCcCCCCEEEEEe-CCEEEEEECCCC
Confidence 33333 35777787754322 222333445678999998877644 678999999874
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.04 E-value=0.00065 Score=58.28 Aligned_cols=92 Identities=5% Similarity=0.000 Sum_probs=60.3
Q ss_pred EEeCC--CCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcC
Q 012007 168 IISGD--SNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNA 245 (473)
Q Consensus 168 ~~s~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 245 (473)
.++|| |+.++-.+ +|.|.+.|+.+++..... .+...+...+|+|
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt---------------------------------~~~~~~~~p~~SP 50 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIV---------------------------------SNLGVINNARFFP 50 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEE---------------------------------CSSSEEEEEEECT
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEe---------------------------------cCCCcccCEEECC
Confidence 45788 88887654 557888899887643321 1556678899999
Q ss_pred CCCEEEEEeC-CC-----CEEEEEcCCCeeeEEee------cCCCceeEEEEcCCC-EEEE
Q 012007 246 EQGLLYSGSW-DK-----TLKVWRISDCKCLESIN------AHDDAINSVVAGFDS-LVFT 293 (473)
Q Consensus 246 ~~~~l~s~s~-dg-----~v~vwd~~~~~~~~~~~------~~~~~v~~l~~~~~~-~l~s 293 (473)
||+.|+-... ++ .|.+++...++...... ..........|+|++ .|+.
T Consensus 51 DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~ 111 (281)
T d1k32a2 51 DGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIS 111 (281)
T ss_dssp TSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred CCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEE
Confidence 9998886542 22 37778887776654321 122345667889988 4443
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=98.04 E-value=0.00081 Score=60.91 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=69.3
Q ss_pred EEEecCCEEEEeeCCC-----------cEEEeeCCccc----cc-cccCcccEEEEEEeCCCCEEEEEeCC-CeEEEEeC
Q 012007 128 SLAASGDLLYTGSDSK-----------NIRVWKNLKEF----SG-FKSNSGLVKAIIISGDSNKIFTGHQD-GKIRIWKV 190 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg-----------~i~vwd~~~~~----~~-~~~h~~~V~~l~~s~~~~~l~s~~~d-g~i~vwd~ 190 (473)
.+..+|++++.|+.+. .+.+||..... .. ...|.......++.++|++++.|+.+ ..+.+||.
T Consensus 26 ~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~ 105 (387)
T d1k3ia3 26 IEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDS 105 (387)
T ss_dssp EETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEG
T ss_pred EEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecC
Confidence 3445788888887531 36789865321 11 12233334566788999999988765 57999998
Q ss_pred CCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCC------CCEEEEEc
Q 012007 191 SRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWD------KTLKVWRI 264 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d------g~v~vwd~ 264 (473)
.+....... ..+ ....-...+..+|+++++.|+.+ ..+.+||.
T Consensus 106 ~~~~w~~~~---~~~----------------------------~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~ 154 (387)
T d1k3ia3 106 SSDSWIPGP---DMQ----------------------------VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP 154 (387)
T ss_dssp GGTEEEECC---CCS----------------------------SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred ccCcccccc---ccc----------------------------ccccccceeeecCCceeeeccccccccccceeeeecC
Confidence 776542211 111 11222356667899999988753 35899999
Q ss_pred CCCee
Q 012007 265 SDCKC 269 (473)
Q Consensus 265 ~~~~~ 269 (473)
.+.+-
T Consensus 155 ~~~~W 159 (387)
T d1k3ia3 155 SSKTW 159 (387)
T ss_dssp TTTEE
T ss_pred CCCce
Confidence 87653
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.35 E-value=0.032 Score=46.96 Aligned_cols=222 Identities=6% Similarity=0.034 Sum_probs=130.5
Q ss_pred cCcccEEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCC
Q 012007 159 SNSGLVKAIIISGDSNKIFTGH-QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA 237 (473)
Q Consensus 159 ~h~~~V~~l~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (473)
.+...+.+|+|....+.|+-.. .++.|+..++.......... .....
T Consensus 33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~--------------------------------~~~~~ 80 (263)
T d1npea_ 33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR--------------------------------QDLGS 80 (263)
T ss_dssp EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC--------------------------------TTCCC
T ss_pred cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEE--------------------------------ecccc
Confidence 3455688899998877777654 45778888887554322111 12245
Q ss_pred eeEEEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEe-CCCcEEEEeCcccCCCcce
Q 012007 238 VSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGS-ADGTVKVWRRELQGKGTKH 314 (473)
Q Consensus 238 v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~-~dg~i~vwd~~~~~~~~~~ 314 (473)
+..|++..-+..|+.+. ..+.|.+.++........+.........+++.|.. +++... ..+..+|+.....+.. ..
T Consensus 81 p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~-~~ 159 (263)
T d1npea_ 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RR 159 (263)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CE
T ss_pred ccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC-ce
Confidence 78899987666666554 56789999987554433333334677889887765 555333 2234445544332221 11
Q ss_pred eeeeeeccCCccEEEEEEccCCCEEEEe-CCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEe-CCCcEEEE
Q 012007 315 CLAQVLLKHENAVTALAVNQESAVVYCG-SSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGS-ADRNICLW 392 (473)
Q Consensus 315 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~-~dg~i~iw 392 (473)
......-....+|++.+.++.|+.. ...+.|...|+...... ....+-. .-..++.++.+|+... ..+.|...
T Consensus 160 ---~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~-~v~~~~~-~P~~lav~~~~lYwtd~~~~~I~~~ 234 (263)
T d1npea_ 160 ---ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR-KVLEGLQ-YPFAVTSYGKNLYYTDWKTNSVIAM 234 (263)
T ss_dssp ---EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE-EEEECCC-SEEEEEEETTEEEEEETTTTEEEEE
T ss_pred ---eeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeE-EEECCCC-CcEEEEEECCEEEEEECCCCEEEEE
Confidence 1122233566899999877766555 56788999998754322 2333322 2346666666665554 56788888
Q ss_pred ecCCCCceeEEEEec-CCCCceeEEEEecC
Q 012007 393 RREESGAHSCLAVLT-GHTGPVKCLAVEED 421 (473)
Q Consensus 393 d~~~~~~~~~~~~~~-~h~~~V~~l~~~~~ 421 (473)
|..++ +.+..+. .......+|++.++
T Consensus 235 ~~~~g---~~~~~~~~~~~~~~~gi~v~~~ 261 (263)
T d1npea_ 235 DLAIS---KEMDTFHPHKQTRLYGITIALS 261 (263)
T ss_dssp ETTTT---EEEEEECCSSCCCCCCEEEECS
T ss_pred ECCCC---ccceEECCCCCCCcceEEEeCC
Confidence 88773 3344332 33344556666554
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=0.055 Score=45.56 Aligned_cols=220 Identities=14% Similarity=0.079 Sum_probs=125.3
Q ss_pred cEEEeeCCc-cccccccCcccEEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceE
Q 012007 144 NIRVWKNLK-EFSGFKSNSGLVKAIIISGDSNKIFTGH-QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYV 221 (473)
Q Consensus 144 ~i~vwd~~~-~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (473)
.|+-.++.. ....+......+.+|+|.+.+++|+-.. .++.|...++..........
T Consensus 11 ~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~--------------------- 69 (266)
T d1ijqa1 11 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD--------------------- 69 (266)
T ss_dssp SEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE---------------------
T ss_pred eEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceE---------------------
Confidence 466666542 2223333455678999998887777654 35566666654322110000
Q ss_pred EEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCC-CEEEEEeC--C
Q 012007 222 EVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSA--D 297 (473)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~-~~l~s~~~--d 297 (473)
.........+..|++.+.+..|+.+. ..+.|.+.++........+.........+++.|. ++++.... .
T Consensus 70 -------~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~ 142 (266)
T d1ijqa1 70 -------TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP 142 (266)
T ss_dssp -------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSS
T ss_pred -------EEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCC
Confidence 00001234567889987666666654 5577999998766655555555667888988775 55554433 3
Q ss_pred CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe-CCCCcEEEEecCCcccccceeec--CcceEEEEE
Q 012007 298 GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG-SSDGLVNFWECEKHLSHGGVLRG--HKMAVLCLA 374 (473)
Q Consensus 298 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~ 374 (473)
+.|.-.++. +. . ........-.....+++.+.++.|+.+ ...+.|...++...... ..... .......++
T Consensus 143 ~~I~r~~~d--Gs--~--~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~-~~~~~~~~~~~p~~la 215 (266)
T d1ijqa1 143 AKIKKGGLN--GV--D--IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFSLA 215 (266)
T ss_dssp CEEEEEETT--SC--C--EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEECTTTTSSEEEEE
T ss_pred cceeEeccC--CC--c--eecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEE-EEEeCCCcccccEEEE
Confidence 445555543 21 1 111122333567899999877766555 66788999888653322 22222 123356677
Q ss_pred ecCCEEEEEe-CCCcEEEEecCCCC
Q 012007 375 AAGNLVFSGS-ADRNICLWRREESG 398 (473)
Q Consensus 375 ~~~~~l~s~~-~dg~i~iwd~~~~~ 398 (473)
.++.+|+... .++.|...+..++.
T Consensus 216 v~~~~ly~td~~~~~I~~~~~~~g~ 240 (266)
T d1ijqa1 216 VFEDKVFWTDIINEAIFSANRLTGS 240 (266)
T ss_dssp EETTEEEEEETTTTEEEEEETTTCC
T ss_pred EECCEEEEEECCCCeEEEEECCCCc
Confidence 7766666554 56778777776643
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.00 E-value=0.08 Score=47.01 Aligned_cols=118 Identities=12% Similarity=0.112 Sum_probs=65.9
Q ss_pred ccCCeeEEEEcCCCCEEEEEeCC-CCEEEEEcCCCeeeEE--eecCCCceeEEEEcCCC-EEEEEeCC------CcEEEE
Q 012007 234 HYDAVSCLSLNAEQGLLYSGSWD-KTLKVWRISDCKCLES--INAHDDAINSVVAGFDS-LVFTGSAD------GTVKVW 303 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s~d-g~v~vwd~~~~~~~~~--~~~~~~~v~~l~~~~~~-~l~s~~~d------g~i~vw 303 (473)
+.......++.+++.+++.|+.+ ..+.+||..+..-... +.... .-...+...++ +++.|+.+ ..+.+|
T Consensus 74 ~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r-~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~y 152 (387)
T d1k3ia3 74 HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVY 152 (387)
T ss_dssp CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEE
T ss_pred cccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccc-cccceeeecCCceeeeccccccccccceeeee
Confidence 33334566788999999988755 5799999987654332 12111 22344555666 55555532 358899
Q ss_pred eCcccCCCcceeeeee-------eccCC-----ccEEEEEEccCCCEEEEeCCCCcEEEEecCCc
Q 012007 304 RRELQGKGTKHCLAQV-------LLKHE-----NAVTALAVNQESAVVYCGSSDGLVNFWECEKH 356 (473)
Q Consensus 304 d~~~~~~~~~~~~~~~-------~~~~~-----~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~ 356 (473)
|..... ...... ...+. ..-..+...++++.++.+..++.+.++|..+.
T Consensus 153 d~~~~~----W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~ 213 (387)
T d1k3ia3 153 SPSSKT----WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG 213 (387)
T ss_dssp ETTTTE----EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred cCCCCc----eeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccC
Confidence 986421 111100 00000 01112334457777877877777888777653
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.80 E-value=0.15 Score=45.16 Aligned_cols=198 Identities=10% Similarity=0.122 Sum_probs=108.8
Q ss_pred EEEEeC---CCCEEEEEe-CCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEE
Q 012007 166 AIIISG---DSNKIFTGH-QDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCL 241 (473)
Q Consensus 166 ~l~~s~---~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 241 (473)
.+.+.. ||+||+... .+.+|-+-|+.+.+......+. ....+..+
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iP-------------------------------n~~~~HG~ 137 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIP-------------------------------NAKGIHGL 137 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECS-------------------------------SCCSEEEE
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecC-------------------------------CCCCCcee
Confidence 455543 789988876 4788999999988765544432 22233334
Q ss_pred EEc--CCCCEEEEEeCC------------------CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCCC--
Q 012007 242 SLN--AEQGLLYSGSWD------------------KTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADG-- 298 (473)
Q Consensus 242 ~~~--~~~~~l~s~s~d------------------g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~dg-- 298 (473)
... |+-.+++.++.+ +.+.++|..+.+....+... .....+.+++++ ++++.+.+.
T Consensus 138 r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~ 216 (459)
T d1fwxa2 138 RPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEK 216 (459)
T ss_dssp EECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTC
T ss_pred ecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccC
Confidence 443 344455555542 23667888888877766543 345667788887 555544321
Q ss_pred -------------cEEEEeCccc------CCC------------c-ceeeeeeeccCCccEEEEEEccCCCEEEEeC-CC
Q 012007 299 -------------TVKVWRRELQ------GKG------------T-KHCLAQVLLKHENAVTALAVNQESAVVYCGS-SD 345 (473)
Q Consensus 299 -------------~i~vwd~~~~------~~~------------~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~d 345 (473)
.+.++++... ++. . ..........-......+.++|||+++++++ .+
T Consensus 217 g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs 296 (459)
T d1fwxa2 217 GMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLS 296 (459)
T ss_dssp CSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTS
T ss_pred CcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcC
Confidence 1333332100 000 0 0000000111122345689999999877654 58
Q ss_pred CcEEEEecCCcccc-------cceee-----cCcceEEEEEecCCEEEEEeCCCcEEEEecC
Q 012007 346 GLVNFWECEKHLSH-------GGVLR-----GHKMAVLCLAAAGNLVFSGSADRNICLWRRE 395 (473)
Q Consensus 346 g~i~iwd~~~~~~~-------~~~~~-----~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~ 395 (473)
.++.++|+++-... ..... +-.---+.+.-.|+-..+---|..|.-|++.
T Consensus 297 ~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 297 PTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp SBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred CcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEEEecc
Confidence 89999998742111 11111 1111123333345555556689999999985
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.44 E-value=0.2 Score=41.85 Aligned_cols=198 Identities=8% Similarity=0.011 Sum_probs=114.1
Q ss_pred ccCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcC-CC-EEEEEeCCCcEEEEeCcccCC
Q 012007 234 HYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAHDDAINSVVAGF-DS-LVFTGSADGTVKVWRRELQGK 310 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~dg~i~vwd~~~~~~ 310 (473)
+...+..|+|+...+.|+-.. .++.|+..++........+......+.++++.. .+ +.++-...+.|.+.++.....
T Consensus 34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~ 113 (263)
T d1npea_ 34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR 113 (263)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE
Confidence 344577899998777777664 557788888876555444444445677888754 33 444556678999999863211
Q ss_pred CcceeeeeeeccCCccEEEEEEccCCCEEEEeCCC-C--cEEEEecCCcccccceeecCcceE--EEEEecCCEEEEE-e
Q 012007 311 GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD-G--LVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSG-S 384 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~-~ 384 (473)
. .........+..++++|...+|+..... + .|.--++...... ......-... +++.+.++.|+.+ .
T Consensus 114 ---~---~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~-~i~~~~~~~P~glaiD~~~~~lYw~d~ 186 (263)
T d1npea_ 114 ---R---VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR-ILAQDNLGLPNGLTFDAFSSQLCWVDA 186 (263)
T ss_dssp ---E---EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE-EEECTTCSCEEEEEEETTTTEEEEEET
T ss_pred ---E---EEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce-eeeeecccccceEEEeecCcEEEEEeC
Confidence 1 1122233568899999977776654322 2 3444455432221 1222222223 4444456666544 5
Q ss_pred CCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 385 ADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 385 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
..+.|...+++.. .....+.+-.. ..+|++.. +. +..+-...+.|..-+...++
T Consensus 187 ~~~~I~~~~~~g~---~~~~v~~~~~~-P~~lav~~-~~-------------lYwtd~~~~~I~~~~~~~g~ 240 (263)
T d1npea_ 187 GTHRAECLNPAQP---GRRKVLEGLQY-PFAVTSYG-KN-------------LYYTDWKTNSVIAMDLAISK 240 (263)
T ss_dssp TTTEEEEEETTEE---EEEEEEECCCS-EEEEEEET-TE-------------EEEEETTTTEEEEEETTTTE
T ss_pred CCCEEEEEECCCC---CeEEEECCCCC-cEEEEEEC-CE-------------EEEEECCCCEEEEEECCCCc
Confidence 6778999998762 22222333333 35788763 22 45555566777777776554
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.37 E-value=0.42 Score=44.88 Aligned_cols=49 Identities=14% Similarity=0.089 Sum_probs=31.6
Q ss_pred EEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCC-CCceeEEEEecCCCC
Q 012007 373 LAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGH-TGPVKCLAVEEDRDH 424 (473)
Q Consensus 373 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~ 424 (473)
++..+.++++|+.||.++.+|.+++ +.+-.+.-- ...-.-+.|..++++
T Consensus 471 l~TagglVf~G~~dg~l~A~Da~tG---e~lW~~~l~~~~~a~P~ty~~dGkq 520 (571)
T d2ad6a1 471 LYTKGGLVWYATLDGYLKALDNKDG---KELWNFKMPSGGIGSPMTYSFKGKQ 520 (571)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTC---CEEEEEECSSCCCSCCEEEEETTEE
T ss_pred eEecCCEEEEECCCCeEEEEECCCC---cEEEEEECCCCceecceEEEECCEE
Confidence 3446788999999999999999994 445444321 111222556667763
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.13 E-value=0.56 Score=43.99 Aligned_cols=25 Identities=16% Similarity=0.073 Sum_probs=21.4
Q ss_pred EEEEeeCCCcEEEEEcCCCCCCccC
Q 012007 437 TVYSGSLDKSVKVWRVSEHAPDLKG 461 (473)
Q Consensus 437 ~l~s~s~Dg~v~iW~i~~~~~~~~~ 461 (473)
+++.|+.||.++.+|..+++..++.
T Consensus 477 lVf~G~~dg~l~A~Da~tGe~lW~~ 501 (571)
T d2ad6a1 477 LVWYATLDGYLKALDNKDGKELWNF 501 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCCcEEEEE
Confidence 6778999999999999999877653
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.12 E-value=0.31 Score=40.88 Aligned_cols=107 Identities=12% Similarity=0.131 Sum_probs=72.5
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeee
Q 012007 241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVL 320 (473)
Q Consensus 241 l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 320 (473)
.-.+|..+.|+.-+ ..++.++|+++.+.+..+.-.+ .|.-=.|-.+..|+..+ +..|.-|+++... .+.+.+
T Consensus 68 AIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~~L~lVT-~taVYHW~~~g~s-----~P~k~f 139 (327)
T d1utca2 68 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT-DNAVYHWSMEGES-----QPVKMF 139 (327)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSSSEEEEEC-SSEEEEEESSSSC-----CCEEEE
T ss_pred hhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecCCCEEEEEc-CCceEEEcccCCC-----Cchhhh
Confidence 44678777777766 5689999999999998887554 56566777777665554 4679999986322 123333
Q ss_pred ccC----CccEEEEEEccCCCEEEEeC-------CCCcEEEEecCC
Q 012007 321 LKH----ENAVTALAVNQESAVVYCGS-------SDGLVNFWECEK 355 (473)
Q Consensus 321 ~~~----~~~v~~l~~~~~~~~l~~~~-------~dg~i~iwd~~~ 355 (473)
..| ...|..-..++++++++..+ -.|.+.+|..+.
T Consensus 140 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er 185 (327)
T d1utca2 140 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 185 (327)
T ss_dssp ECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT
T ss_pred hhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc
Confidence 333 45677778888888876543 136678888765
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.11 E-value=0.37 Score=41.80 Aligned_cols=139 Identities=15% Similarity=0.254 Sum_probs=77.7
Q ss_pred CEEEEEcC-CCeeeEEeecC-------CCceeEEEE--cCC-C--EEEEEeCCCcEEEEeCcccCCCc-ceeeeeeeccC
Q 012007 258 TLKVWRIS-DCKCLESINAH-------DDAINSVVA--GFD-S--LVFTGSADGTVKVWRRELQGKGT-KHCLAQVLLKH 323 (473)
Q Consensus 258 ~v~vwd~~-~~~~~~~~~~~-------~~~v~~l~~--~~~-~--~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~ 323 (473)
+|.+|.+. ....+..+... ...+..+|+ ++. + ++++...+|.+..|.+...+... ...++.. ..-
T Consensus 100 ~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~-f~~ 178 (353)
T d1h6la_ 100 TIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRA-FKM 178 (353)
T ss_dssp EEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEE-EEC
T ss_pred eEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeec-cCC
Confidence 57777764 22233333211 123556665 544 3 67778889999999876443322 2222222 334
Q ss_pred CccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccce----eec--CcceE--EEEEe--c--CCEEEEEeCCCcEEE
Q 012007 324 ENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV----LRG--HKMAV--LCLAA--A--GNLVFSGSADRNICL 391 (473)
Q Consensus 324 ~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~--~~~~v--~~~~~--~--~~~l~s~~~dg~i~i 391 (473)
...+..|.+.+....|+.+-.+.-|..++.+........ ..+ ...-+ +++-. + |-+|++.-.+++..|
T Consensus 179 ~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~v 258 (353)
T d1h6la_ 179 NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAI 258 (353)
T ss_dssp SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEE
T ss_pred CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEE
Confidence 567899999999999999988776666665421111011 111 11222 22222 2 334555556789999
Q ss_pred EecCCC
Q 012007 392 WRREES 397 (473)
Q Consensus 392 wd~~~~ 397 (473)
||....
T Consensus 259 ydr~~~ 264 (353)
T d1h6la_ 259 YERQGQ 264 (353)
T ss_dssp EESSTT
T ss_pred EecCCC
Confidence 999764
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=95.91 E-value=0.48 Score=44.71 Aligned_cols=71 Identities=8% Similarity=0.063 Sum_probs=44.8
Q ss_pred CEEEEEeCCCeEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeE-EEEcCCCCEEEE
Q 012007 174 NKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSC-LSLNAEQGLLYS 252 (473)
Q Consensus 174 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~~~~~~~l~s 252 (473)
.+++.+..|+.|.-.|..+++............ ...++. -.+ -+..+++
T Consensus 122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~----------------------------~~~~t~~P~v--~~~~viv 171 (596)
T d1w6sa_ 122 ALILKTQLDGNVAALNAETGETVWKVENSDIKV----------------------------GSTLTIAPYV--VKDKVII 171 (596)
T ss_dssp CEEEEECTTSEEEEEETTTCCEEEEEECCCGGG----------------------------TCBCCSCCEE--ETTEEEE
T ss_pred eEEEEEeCCCCeEeeccccCceecccccccccc----------------------------ccccccCCcE--ECCeEEE
Confidence 478889999999999999998776554321100 000000 000 1334555
Q ss_pred Ee------CCCCEEEEEcCCCeeeEEee
Q 012007 253 GS------WDKTLKVWRISDCKCLESIN 274 (473)
Q Consensus 253 ~s------~dg~v~vwd~~~~~~~~~~~ 274 (473)
+. ..|.|+-+|+++|+.+..+.
T Consensus 172 g~~~~e~~~~G~v~A~Da~TG~~~W~~~ 199 (596)
T d1w6sa_ 172 GSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (596)
T ss_dssp CCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred eeccccccccCceEEEECCCCcEEEEee
Confidence 53 24889999999999988764
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.82 E-value=0.61 Score=41.90 Aligned_cols=250 Identities=11% Similarity=0.129 Sum_probs=126.2
Q ss_pred CcccEEEEEEeCCCCEEEEE-eCCC----eEEEEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeec
Q 012007 160 NSGLVKAIIISGDSNKIFTG-HQDG----KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRH 234 (473)
Q Consensus 160 h~~~V~~l~~s~~~~~l~s~-~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
+.-.+..++++||+++++-+ +.+| .|++.|+.+++...... .
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i---------------------------------~ 169 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL---------------------------------E 169 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE---------------------------------E
T ss_pred ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc---------------------------------c
Confidence 44445677889999988843 3333 69999999987543221 1
Q ss_pred cCCeeEEEEcCCCCEEEEEeCC----------------CCEEEEEcCCCee--eEEeecCC--CceeEEEEcCCC-EEE-
Q 012007 235 YDAVSCLSLNAEQGLLYSGSWD----------------KTLKVWRISDCKC--LESINAHD--DAINSVVAGFDS-LVF- 292 (473)
Q Consensus 235 ~~~v~~l~~~~~~~~l~s~s~d----------------g~v~vwd~~~~~~--~~~~~~~~--~~v~~l~~~~~~-~l~- 292 (473)
......++|.+++..|+-...+ ..|..|.+.+... ...+.... ..+..+..+.++ +++
T Consensus 170 ~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i 249 (430)
T d1qfma1 170 RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL 249 (430)
T ss_dssp EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred cccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeE
Confidence 1112468899998877654332 2477888766432 22333332 345566677777 333
Q ss_pred EEe--CCCcEEEE--eCcccCCCc--ceeeeeeeccCCccEEEEEEccCCCEEEEeC---CCCcEEEEecCCcccc--cc
Q 012007 293 TGS--ADGTVKVW--RRELQGKGT--KHCLAQVLLKHENAVTALAVNQESAVVYCGS---SDGLVNFWECEKHLSH--GG 361 (473)
Q Consensus 293 s~~--~dg~i~vw--d~~~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~--~~ 361 (473)
... .+....+| |+....... ................-+ .+.++.+++... .++.|...++...... ..
T Consensus 250 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~ 328 (430)
T d1qfma1 250 SIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYV-TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV 328 (430)
T ss_dssp EEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEE
T ss_pred EeeccCCccEEEEEeeCCCcccccccccceeEeecccccceEEE-ecCCceeecccCcccccceeEEecCCCCccccceE
Confidence 222 23344444 443211100 001111122222233322 233333444333 2466777777653221 12
Q ss_pred eeecCcceE--EEEEecCCEEEEEe-CCC--cEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccE
Q 012007 362 VLRGHKMAV--LCLAAAGNLVFSGS-ADR--NICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRW 436 (473)
Q Consensus 362 ~~~~~~~~v--~~~~~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~ 436 (473)
.+..+...+ ..+...+.+|+... .++ .|++++..++. .......-.+.|..+...++.. .
T Consensus 329 vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~---~~~~~~~~~~sv~~~~~~~~~~-----------~- 393 (430)
T d1qfma1 329 LVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA---LLKIFPLEVGSVVGYSGQKKDT-----------E- 393 (430)
T ss_dssp EECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC---EEEEECCCSSEEEEEECCTTCS-----------E-
T ss_pred EecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCc---EEEecCCCCceEeeccCCCCCC-----------E-
Confidence 333344333 34555667666554 454 58889988742 2222333345555554444332 1
Q ss_pred EEEE-ee--CCCcEEEEEcCCCCCC
Q 012007 437 TVYS-GS--LDKSVKVWRVSEHAPD 458 (473)
Q Consensus 437 ~l~s-~s--~Dg~v~iW~i~~~~~~ 458 (473)
++++ .| .=.++.-+|+.+++..
T Consensus 394 ~~~~~ss~~tP~~~y~~Dl~t~~~~ 418 (430)
T d1qfma1 394 IFYQFTSFLSPGIIYHCDLTKEELE 418 (430)
T ss_dssp EEEEEECSSCCCEEEEEETTSSSCC
T ss_pred EEEEEcCCCCCCeEEEEECCCCCcc
Confidence 3333 22 2367888888877643
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.69 E-value=0.64 Score=41.11 Aligned_cols=190 Identities=14% Similarity=0.049 Sum_probs=109.0
Q ss_pred ecCCEEEEee-CCCcEEEeeCC--cccccc-ccCcccEEEEEEe--CCCCEEEEEeCCC------------------eEE
Q 012007 131 ASGDLLYTGS-DSKNIRVWKNL--KEFSGF-KSNSGLVKAIIIS--GDSNKIFTGHQDG------------------KIR 186 (473)
Q Consensus 131 ~~g~~l~tg~-~dg~i~vwd~~--~~~~~~-~~h~~~V~~l~~s--~~~~~l~s~~~dg------------------~i~ 186 (473)
+||++|++.. .+..|-+-|+. +..+.. ......+..++.. |+..|++.++.+. .+.
T Consensus 97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t 176 (459)
T d1fwxa2 97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 176 (459)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence 4688888776 47788888865 221211 1234556666664 4556787776642 245
Q ss_pred EEeCCCCCeeeEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCC---------
Q 012007 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDK--------- 257 (473)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg--------- 257 (473)
++|.++.+...+..+ ......+.++++|+++++.+.+.
T Consensus 177 ~ID~~tm~V~~QV~V---------------------------------~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ 223 (459)
T d1fwxa2 177 AVDADKWEVAWQVLV---------------------------------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEM 223 (459)
T ss_dssp EEETTTTEEEEEEEE---------------------------------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHH
T ss_pred EEecCCceEEEEeee---------------------------------CCChhccccCCCCCEEEEEeccccCCcchhhc
Confidence 566665554443332 22344577788888877776432
Q ss_pred -----------------------------CEEEEEcCCC---eeeEEeecCCCceeEEEEcCCC--EEEEEeCCCcEEEE
Q 012007 258 -----------------------------TLKVWRISDC---KCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVW 303 (473)
Q Consensus 258 -----------------------------~v~vwd~~~~---~~~~~~~~~~~~v~~l~~~~~~--~l~s~~~dg~i~vw 303 (473)
.+.+.|.+.. ..+..+... .....+..+||+ .++++..+.++.|+
T Consensus 224 ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSVi 302 (459)
T d1fwxa2 224 TAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVL 302 (459)
T ss_dssp TCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEE
T ss_pred ccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEE
Confidence 1233343321 112222221 224567889998 55667779999999
Q ss_pred eCcccCC-----CcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecC
Q 012007 304 RRELQGK-----GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECE 354 (473)
Q Consensus 304 d~~~~~~-----~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 354 (473)
|++.-.. ......+.......-.-..-+|+..|.-..+..-|..|.-|++.
T Consensus 303 D~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 303 DVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp EGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred EehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEEEecc
Confidence 9862110 00011111111223345667898888767777889999999985
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=95.59 E-value=0.92 Score=42.30 Aligned_cols=74 Identities=20% Similarity=0.239 Sum_probs=40.2
Q ss_pred cEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCC-ceeEEEEecCCC
Q 012007 347 LVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTG-PVKCLAVEEDRD 423 (473)
Q Consensus 347 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-~V~~l~~~~~~~ 423 (473)
.|.-||+.+++..-....+....--.++-.+.++++|+.||.++.+|.+++ +.+-.+.-... .-.-+.+.-+++
T Consensus 439 ~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tG---e~LW~~~l~~~~~~~P~ty~~dGk 513 (560)
T d1kv9a2 439 ALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKG---EALWQFEAQSGIVAAPMTFELAGR 513 (560)
T ss_dssp EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC---CEEEEEECSSCCCSCCEEEEETTE
T ss_pred ceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCC---cEeEEEECCCCccccCEEEEECCE
Confidence 455555555433322222211111234556789999999999999999995 44544432211 111245556665
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.21 E-value=0.68 Score=38.45 Aligned_cols=201 Identities=11% Similarity=0.057 Sum_probs=111.8
Q ss_pred ccCCeeEEEEcCCCCEEEEEe-CCCCEEEEEcCCCe----eeEEeecCCCceeEEEEcC--CCEEEEEeCCCcEEEEeCc
Q 012007 234 HYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCK----CLESINAHDDAINSVVAGF--DSLVFTGSADGTVKVWRRE 306 (473)
Q Consensus 234 ~~~~v~~l~~~~~~~~l~s~s-~dg~v~vwd~~~~~----~~~~~~~~~~~v~~l~~~~--~~~l~s~~~dg~i~vwd~~ 306 (473)
....+..|+|++..+.|+-.. .++.|.-.++.... ....+......+..+++.. +.+.++-...+.|.+.++.
T Consensus 28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~ 107 (266)
T d1ijqa1 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 107 (266)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence 344567899998888777765 45556666654321 1122222334566677653 3355565677889999986
Q ss_pred ccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC--CCCcEEEEecCCcccccceeecCcceE--EEEEecCCEEEE
Q 012007 307 LQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS--SDGLVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFS 382 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s 382 (473)
... ..............++++|...+|+... ..+.|.-.++...... ......-... +++.+.++.|+.
T Consensus 108 g~~------~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~-~l~~~~~~~p~gl~iD~~~~~lYw 180 (266)
T d1ijqa1 108 GVK------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVTENIQWPNGITLDLLSGRLYW 180 (266)
T ss_dssp SSS------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-EEECSSCSCEEEEEEETTTTEEEE
T ss_pred Cce------EEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee-cccccccceeeEEEeeccccEEEE
Confidence 221 1122333445678999999666655443 3456666666543221 1222222223 444555665555
Q ss_pred E-eCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCCCC
Q 012007 383 G-SADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456 (473)
Q Consensus 383 ~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~~~ 456 (473)
+ ...+.|...++..... ..+...........+|++..+ . ++.+-..++.|...+...+.
T Consensus 181 ~d~~~~~I~~~~~dG~~~-~~~~~~~~~~~~p~~lav~~~-~-------------ly~td~~~~~I~~~~~~~g~ 240 (266)
T d1ijqa1 181 VDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED-K-------------VFWTDIINEAIFSANRLTGS 240 (266)
T ss_dssp EETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEETT-E-------------EEEEETTTTEEEEEETTTCC
T ss_pred ecCCcCEEEEEECCCCCE-EEEEeCCCcccccEEEEEECC-E-------------EEEEECCCCeEEEEECCCCc
Confidence 4 5667899889876332 333333333334567887743 2 55555567778777766654
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=95.07 E-value=0.9 Score=39.25 Aligned_cols=179 Identities=10% Similarity=0.075 Sum_probs=94.0
Q ss_pred eeEEEEcCCCCEEEEEeC------------CCCEEEEEcCCCeee-EEeecCC-------CceeEEEE--cCCC--EEEE
Q 012007 238 VSCLSLNAEQGLLYSGSW------------DKTLKVWRISDCKCL-ESINAHD-------DAINSVVA--GFDS--LVFT 293 (473)
Q Consensus 238 v~~l~~~~~~~~l~s~s~------------dg~v~vwd~~~~~~~-~~~~~~~-------~~v~~l~~--~~~~--~l~s 293 (473)
...|...|+|..+++++. .|.|.++|+.+.+.. ..+.... -....+.. ..++ +|++
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v 116 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 116 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence 446788888877766542 488999998765321 1221111 11233332 3344 5555
Q ss_pred Ee---CCCcEEEEeCcccCCCcceeeeeee-ccCCccEEEEEEccCCCEEEEeCC-----------------CCcEEEEe
Q 012007 294 GS---ADGTVKVWRRELQGKGTKHCLAQVL-LKHENAVTALAVNQESAVVYCGSS-----------------DGLVNFWE 352 (473)
Q Consensus 294 ~~---~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~~~~-----------------dg~i~iwd 352 (473)
.. ...+|.+|++..... ........ .......+.+++..++.++++-.. -+.+..||
T Consensus 117 vnH~~~~~~ieif~~~~~~~--~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~ 194 (340)
T d1v04a_ 117 VNHPGSSSTVEVFKFQEEEK--SLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 194 (340)
T ss_dssp EECSTTCCEEEEEEEETTTT--EEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EeccCCCceeEEEEEeCCCC--eEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc
Confidence 53 356788888764332 12222222 223355788999999988887321 12344444
Q ss_pred cCCcccccceeecCcceEEEEEecCCEEEEE-eCCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecC
Q 012007 353 CEKHLSHGGVLRGHKMAVLCLAAAGNLVFSG-SADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEED 421 (473)
Q Consensus 353 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 421 (473)
....... ........-.++++++++|+.+ +..+.|++|++...+......... -.+..-.+.+.+.
T Consensus 195 ~~~~~~~--~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~~ 261 (340)
T d1v04a_ 195 PNDVRVV--AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPV 261 (340)
T ss_dssp SSCEEEE--EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTT
T ss_pred CCceEEE--cCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEec-CCCCCCccEEecC
Confidence 3322111 1111223335667788776655 467789999997644333333322 2334556666653
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.84 E-value=1.6 Score=40.82 Aligned_cols=75 Identities=20% Similarity=0.156 Sum_probs=42.6
Q ss_pred CcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEecCCCC-ceeEEEEecCCC
Q 012007 346 GLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTG-PVKCLAVEEDRD 423 (473)
Q Consensus 346 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-~V~~l~~~~~~~ 423 (473)
|.|.-+|+.+++..-....++...--.++..+.++++|+.||.++.+|.+++ +.+-.+.-... .-.-+.+..+++
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TG---e~LW~~~~~~~~~~~P~ty~~~G~ 541 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSG---KELWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTC---CEEEEEECSSCCCSCCEEEEETTE
T ss_pred CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCC---cEeEEEECCCCccccCEEEEECCE
Confidence 4455566665543322222222111134567889999999999999999994 55555442211 112256667775
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.80 E-value=0.93 Score=37.89 Aligned_cols=199 Identities=10% Similarity=0.152 Sum_probs=113.2
Q ss_pred EEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeeccccc
Q 012007 129 LAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPT 206 (473)
Q Consensus 129 ~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 206 (473)
+.|..+.||.-+ ..++.|+|+. +.++.+.- ...|.--.|-.+. .|+-.. +..|+-|+++.... ........+.
T Consensus 70 MhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~-P~k~fdR~~~ 144 (327)
T d1utca2 70 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQ-PVKMFDRHSS 144 (327)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSSS-EEEEEC-SSEEEEEESSSSCC-CEEEEECCGG
T ss_pred cCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCCC-EEEEEc-CCceEEEcccCCCC-chhhhhhccc
Confidence 345566666555 4589999975 33444433 3567777776554 555443 44799999965432 1111111110
Q ss_pred cceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEe-------CCCCEEEEEcCCCeeeEEeecCCCc
Q 012007 207 FKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGS-------WDKTLKVWRISDCKCLESINAHDDA 279 (473)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-------~dg~v~vwd~~~~~~~~~~~~~~~~ 279 (473)
+ ....|-.-..+++.++++..+ -.|.+.+|..+.. .-+.+++|...
T Consensus 145 L--------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~ 197 (327)
T d1utca2 145 L--------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAAS 197 (327)
T ss_dssp G--------------------------TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEE
T ss_pred c--------------------------cCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeee
Confidence 0 122344444555666554432 1367889998654 34567777665
Q ss_pred eeEEEEcCCC----EEEEE---eCCCcEEEEeCcccCCCcc---eeeeeeec---cCCccEEEEEEccCCCEEEEeCCCC
Q 012007 280 INSVVAGFDS----LVFTG---SADGTVKVWRRELQGKGTK---HCLAQVLL---KHENAVTALAVNQESAVVYCGSSDG 346 (473)
Q Consensus 280 v~~l~~~~~~----~l~s~---~~dg~i~vwd~~~~~~~~~---~~~~~~~~---~~~~~v~~l~~~~~~~~l~~~~~dg 346 (473)
...+....+. ++..+ ...+.+++-++.....+.. ........ ...+-..++..++.-..++.-+.-|
T Consensus 198 F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G 277 (327)
T d1utca2 198 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYG 277 (327)
T ss_dssp EEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTS
T ss_pred eEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCc
Confidence 5555443221 22222 2346888888865322111 11111221 2245567888999888999999999
Q ss_pred cEEEEecCCcccc
Q 012007 347 LVNFWECEKHLSH 359 (473)
Q Consensus 347 ~i~iwd~~~~~~~ 359 (473)
.|++||++++...
T Consensus 278 ~i~lyDleTgt~i 290 (327)
T d1utca2 278 YIHLYDLETGTCI 290 (327)
T ss_dssp EEEEEETTTCCEE
T ss_pred EEEEEEcccccEE
Confidence 9999999987554
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=94.44 E-value=2 Score=40.07 Aligned_cols=58 Identities=21% Similarity=0.202 Sum_probs=34.8
Q ss_pred cEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCceeEEEEec
Q 012007 347 LVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLT 407 (473)
Q Consensus 347 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 407 (473)
.|.-||+.+++..-....+....--.++..+.+|++|+.||.++.||.+++ +.+..+.
T Consensus 458 ~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TG---e~LW~~~ 515 (573)
T d1kb0a2 458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATG---EKLWEAP 515 (573)
T ss_dssp EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC---CEEEEEE
T ss_pred cEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCC---cEeEEEE
Confidence 455555555443322222111111235567889999999999999999995 4454443
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.43 E-value=1.3 Score=38.14 Aligned_cols=196 Identities=11% Similarity=0.183 Sum_probs=106.2
Q ss_pred cCCEEEEeeCCCcEEEeeCCc-cccccccCcccEEEEEEeC------CCCEEEEEeC--C--CeEEEEeCCCCCeeeEEe
Q 012007 132 SGDLLYTGSDSKNIRVWKNLK-EFSGFKSNSGLVKAIIISG------DSNKIFTGHQ--D--GKIRIWKVSRKNASVHKR 200 (473)
Q Consensus 132 ~g~~l~tg~~dg~i~vwd~~~-~~~~~~~h~~~V~~l~~s~------~~~~l~s~~~--d--g~i~vwd~~~~~~~~~~~ 200 (473)
+..+++....++-|.+||+.. .+..+ ..+.++.|..-. ...-|+.++. + ..|.+|.+..........
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~G~~l~~~--~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~ 116 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLEGKMLHSY--HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI 116 (353)
T ss_dssp GGCEEEEEETTSCCEEEETTCCEEEEC--CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred CccEEEEEcCcCCEEEEcCCCcEEEec--ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence 345666666676799999863 33333 235666655432 2223444442 2 368888876433211110
Q ss_pred -eccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEE--cCC-CC-EEEEEeCCCCEEEEEcC---CC----e
Q 012007 201 -VGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL--NAE-QG-LLYSGSWDKTLKVWRIS---DC----K 268 (473)
Q Consensus 201 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~-~~-~l~s~s~dg~v~vwd~~---~~----~ 268 (473)
....+. ..-...+..+|+ ++. +. ++++...+|.+..|.+. .+ +
T Consensus 117 ~~~~~p~-------------------------~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~ 171 (353)
T d1h6la_ 117 TDPNRPI-------------------------ASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGK 171 (353)
T ss_dssp SCSSSCE-------------------------ECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEE
T ss_pred ccccccc-------------------------ccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeE
Confidence 000000 001223556665 554 44 56667788999888763 22 3
Q ss_pred eeEEeecCCCceeEEEEcCC-CEEEEEeCCCcEEEEeCcccCCCcceeeeeeec--cCCccEEEEEEcc----CCCEEEE
Q 012007 269 CLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLL--KHENAVTALAVNQ----ESAVVYC 341 (473)
Q Consensus 269 ~~~~~~~~~~~v~~l~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~----~~~~l~~ 341 (473)
.++.+.. ...+..|.+..+ +.|+.+-.+.-|..++.+.... ....+..... .....+..|++-. +|-+|++
T Consensus 172 lvr~f~~-~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~-~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivS 249 (353)
T d1h6la_ 172 KVRAFKM-NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGG-SNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLAS 249 (353)
T ss_dssp EEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSC-SCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEE
T ss_pred eeeccCC-CCccceEEEeCCCCcEEEecCccceEEEEeccCCC-ccceeeecccCccccCCccccEEEEcCCCCeEEEEE
Confidence 4555653 346777777666 4888888877666666543222 1122221211 2356777777643 2345555
Q ss_pred eCCCCcEEEEecCCc
Q 012007 342 GSSDGLVNFWECEKH 356 (473)
Q Consensus 342 ~~~dg~i~iwd~~~~ 356 (473)
.-.+++..+||....
T Consensus 250 sQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 250 SQGNSSYAIYERQGQ 264 (353)
T ss_dssp EGGGTEEEEEESSTT
T ss_pred cCCCCeEEEEecCCC
Confidence 556789999998764
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=93.19 E-value=1.4 Score=40.97 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=38.5
Q ss_pred CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccC
Q 012007 257 KTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 257 g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~ 309 (473)
|.|.-||+.+++.+..................+++++|+.||.++.+|.++++
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe 490 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE 490 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCc
Confidence 56888999999998877643222222223346789999999999999998654
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.52 E-value=3.3 Score=36.74 Aligned_cols=204 Identities=8% Similarity=0.059 Sum_probs=100.0
Q ss_pred eeEEEEcCCCCEEEEE-eCCC----CEEEEEcCCCeeeEEeecCCCceeEEEEcCCC-EEEEEeCC--------------
Q 012007 238 VSCLSLNAEQGLLYSG-SWDK----TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSAD-------------- 297 (473)
Q Consensus 238 v~~l~~~~~~~~l~s~-s~dg----~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~l~s~~~d-------------- 297 (473)
+..++++|++++++.+ +.+| .|+++|+.+++.+...- .......++|.+++ .|+-...+
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~ 205 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN 205 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence 3456789999988754 3333 59999999998765321 11223567898887 33332211
Q ss_pred --CcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeC---CCCc--EEEEecCCcccc-------ccee
Q 012007 298 --GTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGS---SDGL--VNFWECEKHLSH-------GGVL 363 (473)
Q Consensus 298 --g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~---~dg~--i~iwd~~~~~~~-------~~~~ 363 (473)
..|..+.+.... .....+.........+..+..+.++++++... .++. +.+.|+...... ....
T Consensus 206 ~~~~v~~h~lgt~~--~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 283 (430)
T d1qfma1 206 LHQKLYYHVLGTDQ--SEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI 283 (430)
T ss_dssp CCCEEEEEETTSCG--GGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE
T ss_pred CcceEEEEECCCCc--cccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEee
Confidence 246666654321 11122222222334567788899999876432 2333 344454332111 1112
Q ss_pred ecCcceEEEEEecCCEEEEEe----CCCcEEEEecCCCCceeEEEEecCCCCceeEEEEecCCCCCcccccCCCccEEEE
Q 012007 364 RGHKMAVLCLAAAGNLVFSGS----ADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVY 439 (473)
Q Consensus 364 ~~~~~~v~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~ 439 (473)
........-+...+..++.-+ .++.|...++...........+..+...+..-.+...+.. +++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~------------lvl 351 (430)
T d1qfma1 284 DNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF------------LVL 351 (430)
T ss_dssp CSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTE------------EEE
T ss_pred cccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCE------------EEE
Confidence 222223333444444443322 2456666676653322222223334444443333333321 444
Q ss_pred EeeCCC--cEEEEEcCCCC
Q 012007 440 SGSLDK--SVKVWRVSEHA 456 (473)
Q Consensus 440 s~s~Dg--~v~iW~i~~~~ 456 (473)
..-.|+ .|+++++..+.
T Consensus 352 ~~~~~~~~~l~v~~~~~~~ 370 (430)
T d1qfma1 352 CYLHDVKNTLQLHDLATGA 370 (430)
T ss_dssp EEEETTEEEEEEEETTTCC
T ss_pred EEEcCCEeEEEEEECCCCc
Confidence 444554 36777776554
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.50 E-value=1.5 Score=38.29 Aligned_cols=138 Identities=9% Similarity=-0.039 Sum_probs=80.0
Q ss_pred cEEEEEecCCEEEEeeCCCcEEEeeCCcccccc--ccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeec
Q 012007 125 HIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGF--KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 125 ~V~~~~~~g~~l~tg~~dg~i~vwd~~~~~~~~--~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 202 (473)
.|..++++++.|+.... +.+..++........ ..-..++..+.++|. .++....+|.+.++++...+...... .
T Consensus 88 ~v~~vafs~d~l~v~~~-~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~-~ 163 (381)
T d1xipa_ 88 DVIFVCFHGDQVLVSTR-NALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQ-N 163 (381)
T ss_dssp TEEEEEEETTEEEEEES-SEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEE-S
T ss_pred CeEEEEeeCCEEEEEeC-CCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccC-C
Confidence 47788899888777654 567777765433222 223456888888776 67777889999999998875322111 0
Q ss_pred cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEE-EcCCCeeeEEeecCCCcee
Q 012007 203 SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVW-RISDCKCLESINAHDDAIN 281 (473)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vw-d~~~~~~~~~~~~~~~~v~ 281 (473)
.....-...+.|++|++.+..++++..++ ..+- ++.....+.........|.
T Consensus 164 --------------------------v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~ 216 (381)
T d1xipa_ 164 --------------------------VTSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPL 216 (381)
T ss_dssp --------------------------EEEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEE
T ss_pred --------------------------cceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCccee
Confidence 00001235678888888888887774321 1111 1111111111112344678
Q ss_pred EEEEcCCCEEEE
Q 012007 282 SVVAGFDSLVFT 293 (473)
Q Consensus 282 ~l~~~~~~~l~s 293 (473)
+|.|..+..+++
T Consensus 217 sI~WL~~~~F~v 228 (381)
T d1xipa_ 217 SVTILSPQDFLA 228 (381)
T ss_dssp EEEESSSSEEEE
T ss_pred EEEEecCceEEE
Confidence 899987764443
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=91.77 E-value=2.9 Score=34.41 Aligned_cols=167 Identities=17% Similarity=0.144 Sum_probs=82.1
Q ss_pred CCCCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEcc
Q 012007 255 WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ 334 (473)
Q Consensus 255 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 334 (473)
.|+.+..|.....-.+.........+..+.......++ -.|+.+..|........ .........|..++-.
T Consensus 81 ~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~~~~~~--~~dg~v~~~g~~~~~~~------~~~~~~~~~v~~~~~~- 151 (273)
T d1jtdb_ 81 KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYA--LKDGKVIAWGDDSDGQT------TVPAEAQSGVTALDGG- 151 (273)
T ss_dssp ETTEEEEEECCTTSTTCCCGGGGSSCCEEEEETTEEEE--EETTEEEEEECCTTSTT------SCCGGGGSSEEEEEEC-
T ss_pred eeeeeeccCCCcceeeccccccccceeEEeeecccccc--cccccceecccCCCCce------eeeccCCceEEEEecc-
Confidence 37888888764322111111122334455544333322 24899999975422210 1111122344444432
Q ss_pred CCCEEEEeCCCCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeCCCcEEEEecCCCCc-eeEEEEecCCCCce
Q 012007 335 ESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGA-HSCLAVLTGHTGPV 413 (473)
Q Consensus 335 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~V 413 (473)
...++ ...++.+..|-....... .........+..++....+.+.-. ||.|+.|=....+. ..+ ......|
T Consensus 152 -~~~~~-~~~~g~~~~~G~~~~g~~-~~~~~~~~~v~~Is~G~~h~~~l~-dG~v~~WG~n~~Gql~~~----~~~~~~v 223 (273)
T d1jtdb_ 152 -VYTAL-AVKNGGVIAWGDNYFGQT-TVPAEAQSGVDDVAGGIFHSLALK-DGKVIAWGDNRYKQTTVP----TEALSGV 223 (273)
T ss_dssp -SSEEE-EEETTEEEEEECCTTSTT-SCCGGGSSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTCCC----GGGGSSC
T ss_pred -ceeee-eecccceeEeecccCCcc-cccccccCCccceeccceeeEEEe-cCcEEEcCCCCCCccCCC----ccCCCCc
Confidence 22222 334788888865432222 122223456777777656555444 89999996543211 111 1112346
Q ss_pred eEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEcCC
Q 012007 414 KCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454 (473)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i~~ 454 (473)
..|+-.... .++. .||.|..|--..
T Consensus 224 ~~I~~G~~~--------------~~~l--~~g~v~~WG~~~ 248 (273)
T d1jtdb_ 224 SAIASGEWY--------------SLAL--KNGKVIAWGSSR 248 (273)
T ss_dssp CEEEECSSC--------------EEEE--ETTEEEEESTTC
T ss_pred EEEEeCcce--------------EEEE--ECCEEEEECCCC
Confidence 777654332 3333 389999996544
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=91.50 E-value=5.5 Score=37.07 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=24.8
Q ss_pred EEecCCEEEEEeCCCcEEEEecCCCCceeEEEEec
Q 012007 373 LAAAGNLVFSGSADRNICLWRREESGAHSCLAVLT 407 (473)
Q Consensus 373 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 407 (473)
++..+.+++.|+.||.++.+|.+++ +.+-.+.
T Consensus 480 lsTagglVF~G~~Dg~l~A~Da~TG---e~LW~~~ 511 (596)
T d1w6sa_ 480 MATAGDLVFYGTLDGYLKARDSDTG---DLLWKFK 511 (596)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTC---CEEEEEE
T ss_pred eEecCCEEEEECCCCeEEEEECCCC---cEeeEEE
Confidence 3446889999999999999999994 4554443
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=91.39 E-value=1.7 Score=40.53 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=37.8
Q ss_pred CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccC
Q 012007 257 KTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 257 g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~ 309 (473)
|.|.-||+.+++.+...+..............+++++|+.||.++.+|.++++
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe 509 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE 509 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCc
Confidence 45888999999988877643322222222345689999999999999998665
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.15 E-value=4.1 Score=33.34 Aligned_cols=71 Identities=14% Similarity=0.181 Sum_probs=37.2
Q ss_pred CCCEEEEeCCCC-----cEEEEecCCcccccc-eeecCcceEEEEEecCCEEEEEeCCC-----cEEEEecCCCCceeEE
Q 012007 335 ESAVVYCGSSDG-----LVNFWECEKHLSHGG-VLRGHKMAVLCLAAAGNLVFSGSADR-----NICLWRREESGAHSCL 403 (473)
Q Consensus 335 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~ 403 (473)
++.+++.|+.++ .+..+|..+...... ....-.....+...++++++.|+.++ .|.+||+.+ ..+..+
T Consensus 195 ~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~-~~W~~~ 273 (288)
T d1zgka1 195 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDT-DTWSEV 273 (288)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTT-TEEEEE
T ss_pred eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCC-CEEEEC
Confidence 345556655442 456667654321110 11111111233445788888887654 378899887 446666
Q ss_pred EEe
Q 012007 404 AVL 406 (473)
Q Consensus 404 ~~~ 406 (473)
..+
T Consensus 274 ~~~ 276 (288)
T d1zgka1 274 TRM 276 (288)
T ss_dssp EEC
T ss_pred CCC
Confidence 554
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=88.63 E-value=5.4 Score=32.63 Aligned_cols=219 Identities=13% Similarity=0.135 Sum_probs=101.8
Q ss_pred cEEEEEecCCEEEEeeCCCcEEEeeCC--ccccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEEeec
Q 012007 125 HIYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVG 202 (473)
Q Consensus 125 ~V~~~~~~g~~l~tg~~dg~i~vwd~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 202 (473)
.|..++......+.-. ||.|..|-.. ..+-.-......|..|+.-. ...++ -.||.+..|............
T Consensus 27 ~i~~va~G~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~-~~~~a--l~dg~v~~wG~~~~gq~~~~~-- 100 (273)
T d1jtdb_ 27 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN-YHSLA--LKDGEVIAWGGNEDGQTTVPA-- 100 (273)
T ss_dssp SEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECS-SEEEE--EETTEEEEEECCTTSTTCCCG--
T ss_pred CcEEEEccCCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCC-Cceee--eeeeeeeccCCCcceeecccc--
Confidence 4667766544444334 7998888422 22221122234566665422 22233 248999999764432110000
Q ss_pred cccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEeecCCCceeE
Q 012007 203 SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINS 282 (473)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~v~~ 282 (473)
.....+..++.... ..+. -.|+.+..|.-...............|..
T Consensus 101 ------------------------------~~~~~~~~i~~~~~--~~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~ 147 (273)
T d1jtdb_ 101 ------------------------------EARSGVDAIAAGAW--ASYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTA 147 (273)
T ss_dssp ------------------------------GGGSSCCEEEEETT--EEEE-EETTEEEEEECCTTSTTSCCGGGGSSEEE
T ss_pred ------------------------------ccccceeEEeeecc--cccc-cccccceecccCCCCceeeeccCCceEEE
Confidence 01222334433322 2222 24788888875432221111112233444
Q ss_pred EEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEeCCCCcEEEEecCCcccccce
Q 012007 283 VVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV 362 (473)
Q Consensus 283 l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 362 (473)
+.-.. ..+....++.+..|....... ..........|..|+...... ++. .||.|+.|=....-++..
T Consensus 148 ~~~~~--~~~~~~~~g~~~~~G~~~~g~------~~~~~~~~~~v~~Is~G~~h~-~~l--~dG~v~~WG~n~~Gql~~- 215 (273)
T d1jtdb_ 148 LDGGV--YTALAVKNGGVIAWGDNYFGQ------TTVPAEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTV- 215 (273)
T ss_dssp EEECS--SEEEEEETTEEEEEECCTTST------TSCCGGGSSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCC-
T ss_pred Eeccc--eeeeeecccceeEeecccCCc------ccccccccCCccceeccceee-EEE--ecCcEEEcCCCCCCccCC-
Confidence 44322 222333578888897643221 111222345677777654332 222 379999996543222211
Q ss_pred eecCcceEEEEEecCCEEEEEeCCCcEEEEecC
Q 012007 363 LRGHKMAVLCLAAAGNLVFSGSADRNICLWRRE 395 (473)
Q Consensus 363 ~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~ 395 (473)
.......+..++....+.+.- .||.|..|=..
T Consensus 216 ~~~~~~~v~~I~~G~~~~~~l-~~g~v~~WG~~ 247 (273)
T d1jtdb_ 216 PTEALSGVSAIASGEWYSLAL-KNGKVIAWGSS 247 (273)
T ss_dssp CGGGGSSCCEEEECSSCEEEE-ETTEEEEESTT
T ss_pred CccCCCCcEEEEeCcceEEEE-ECCEEEEECCC
Confidence 111122344555444333333 48999999544
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=88.12 E-value=8.4 Score=34.25 Aligned_cols=38 Identities=16% Similarity=0.080 Sum_probs=29.2
Q ss_pred ccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCeeeEE
Q 012007 162 GLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHK 199 (473)
Q Consensus 162 ~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 199 (473)
..-.+|+|.|||++|++--..|.|++++..++......
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~ 64 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVF 64 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecc
Confidence 35679999999988887655799999998777654433
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.76 E-value=13 Score=34.15 Aligned_cols=53 Identities=25% Similarity=0.265 Sum_probs=39.1
Q ss_pred CCEEEEEcCCCeeeEEeecCCCceeEEEEcCCCEEEEEeCCCcEEEEeCcccC
Q 012007 257 KTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQG 309 (473)
Q Consensus 257 g~v~vwd~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~ 309 (473)
|.|.-+|+.+++.+.....+............+++++|+.||.++.+|.++++
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe 518 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGK 518 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCc
Confidence 67888999999988887654333222223345688899999999999998654
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=85.74 E-value=6.7 Score=30.65 Aligned_cols=164 Identities=14% Similarity=0.106 Sum_probs=81.9
Q ss_pred EEEEEcCCCeeeEEeecCC-CceeEEEEcCCCEEEEEeCCCcEEEEeCcccCCCcceeeeeeec-------cCCccEEEE
Q 012007 259 LKVWRISDCKCLESINAHD-DAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLL-------KHENAVTAL 330 (473)
Q Consensus 259 v~vwd~~~~~~~~~~~~~~-~~v~~l~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-------~~~~~v~~l 330 (473)
|++-++...-....+.... -.|.+++.......++|+......+|-++.++. .....+. -...-|..+
T Consensus 84 i~~~Nlk~~GEE~~i~spk~vRI~S~~yddk~vvF~Gased~~~LYviegGkl----rkL~~vPpFsFVtDI~~d~I~G~ 159 (313)
T d2hu7a1 84 LFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL----RELARLPGFGFVSDIRGDLIAGL 159 (313)
T ss_dssp EEEEETTSTTCEEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE----EEEEEESSCEEEEEEETTEEEEE
T ss_pred EEEEccCCCCeeeEecCCceEEEEEeeecCceEEEecccCCceEEEEEeCCce----eeeccCCCcceEEeccCCeEEEE
Confidence 4555554222223333333 567777877777999999999999988764321 1111111 112334444
Q ss_pred EEcc-CCCEEEEeCC-CCcEEEEecCCcccccceeecCcceEEEEEecCCEEEEEeC---CCcEEEEecCCCCceeEEEE
Q 012007 331 AVNQ-ESAVVYCGSS-DGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSA---DRNICLWRREESGAHSCLAV 405 (473)
Q Consensus 331 ~~~~-~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~ 405 (473)
.+-. +..-++++.. .|.++|++...+....... . -|+.++++-+ .....-+|++++. ...+ .
T Consensus 160 g~~~g~~~sfF~adl~SG~lri~tpkeGS~~~ay~----------~-~gnKV~sdyEt~gEsywit~D~~s~~-yerv-e 226 (313)
T d2hu7a1 160 GFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASI----------S-PGMKVTAGLETAREARLVTVDPRDGS-VEDL-E 226 (313)
T ss_dssp EEEETTEEEEEEEETTTEEEEEECCSSEEEEEEEE----------C-TTSCEEEEEEESSCEEEEEECTTTCC-EEEC-C
T ss_pred eeecCCcceEEEEecccCCEEEecCCCCcccceeE----------c-cCceeeeccCCCCceEEEEEecccCc-eeee-e
Confidence 4432 2222444444 7788888765532211111 1 1222222211 1111234665421 1111 1
Q ss_pred ecC------CCCceeEEEEecCCCCCcccccCCCccEEEEEeeCCCcEEEEEc
Q 012007 406 LTG------HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452 (473)
Q Consensus 406 ~~~------h~~~V~~l~~~~~~~~~~~~~~~~~~~~~l~s~s~Dg~v~iW~i 452 (473)
+.. ..-.|+.+-+.|+++ +++.+-.||.=+++.=
T Consensus 227 ~P~kd~~sy~p~~I~~~~Y~Pdd~-------------L~iiakrdG~s~lF~n 266 (313)
T d2hu7a1 227 LPSKDFSSYRPTAITWLGYLPDGR-------------LAVVARREGRSAVFID 266 (313)
T ss_dssp CSSCHHHHHCCSEEEEEEECTTSC-------------EEEEEEETTEEEEEET
T ss_pred cCcccceeecceEEEeeeeCCCCc-------------EEEEEecCCchheeec
Confidence 111 123566777899988 7788888998888863
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.09 E-value=13 Score=31.96 Aligned_cols=170 Identities=11% Similarity=-0.017 Sum_probs=91.1
Q ss_pred EEEecCCEEEEeeCCCcEEEeeCCcc-----------ccccccCcccEEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCee
Q 012007 128 SLAASGDLLYTGSDSKNIRVWKNLKE-----------FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNAS 196 (473)
Q Consensus 128 ~~~~~g~~l~tg~~dg~i~vwd~~~~-----------~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 196 (473)
+++....+++.|+.++ ++|-.+... ....+..-..|..++|+.+ .|+.. .++.+..++...-...
T Consensus 43 AVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~~~l~~~ 118 (381)
T d1xipa_ 43 DISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDLEELSEF 118 (381)
T ss_dssp EEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEESSSTTCE
T ss_pred EEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEeeccccc
Confidence 6676677888888875 556642110 0011111235889999766 55554 4556777877654322
Q ss_pred eEEeeccccccceeEeecCCCcceEEEeecceeeEeeccCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeEEee--
Q 012007 197 VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN-- 274 (473)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-- 274 (473)
.... .-...+..+.++| ..++....++.+.++++.+++......
T Consensus 119 ~~~~--------------------------------~~~~~~~~~~~~p--~~~~l~~~~~~~~~~~l~~~~~~~~~~~v 164 (381)
T d1xipa_ 119 RTVT--------------------------------SFEKPVFQLKNVN--NTLVILNSVNDLSALDLRTKSTKQLAQNV 164 (381)
T ss_dssp EEEE--------------------------------ECSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEEESE
T ss_pred cccc--------------------------------cccccccceecCC--ceeEEEecCCCEEEEEeccCccccccCCc
Confidence 1111 0234566677766 456677778999999998875433221
Q ss_pred ---cCCCceeEEEEcCCC-EEEEEeCCCcEEEE-eCcccCCCcceeeeeeeccCCccEEEEEEccCCCEEEEe
Q 012007 275 ---AHDDAINSVVAGFDS-LVFTGSADGTVKVW-RRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCG 342 (473)
Q Consensus 275 ---~~~~~v~~l~~~~~~-~l~s~~~dg~i~vw-d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~ 342 (473)
.-...+.++.|++.+ .++++.. +...+- ++. ..............|.+|.|-.+..++++-
T Consensus 165 ~~~~~~~~~~~v~ws~kgkq~v~~~g-~~~q~k~~i~------~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 165 TSFDVTNSQLAVLLKDRSFQSFAWRN-GEMEKQFEFS------LPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp EEEEECSSEEEEEETTSCEEEEEEET-TEEEEEEEEC------CCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred ceEEecCCceEEEEeCCcEEEEEeCC-CceeeccCCC------CccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 112456777777777 4555422 222211 110 000001111234567888888766655543
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=81.21 E-value=17 Score=32.04 Aligned_cols=54 Identities=4% Similarity=-0.029 Sum_probs=38.6
Q ss_pred cCCeeEEEEcCCCCEEEEEeCCCCEEEEEcCCCeeeE--Eee------cCCCceeEEEEcCC
Q 012007 235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE--SIN------AHDDAINSVVAGFD 288 (473)
Q Consensus 235 ~~~v~~l~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~--~~~------~~~~~v~~l~~~~~ 288 (473)
-+.-++|+|.|++++|++--..|.|++++..+++... .+. .-......|+++|+
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 4567899999999988776557999999887765432 221 12346678999886
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.67 E-value=13 Score=30.08 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=13.3
Q ss_pred EEEEeeCCCc-----EEEEEcCCC
Q 012007 437 TVYSGSLDKS-----VKVWRVSEH 455 (473)
Q Consensus 437 ~l~s~s~Dg~-----v~iW~i~~~ 455 (473)
+++.||.++. |.+||+...
T Consensus 245 l~v~GG~~~~~~~~~v~~yd~~~~ 268 (288)
T d1zgka1 245 IYVLGGYDGHTFLDSVECYDPDTD 268 (288)
T ss_dssp EEEECCBCSSCBCCEEEEEETTTT
T ss_pred EEEEecCCCCeecceEEEEECCCC
Confidence 7777776543 778888764
|