Citrus Sinensis ID: 012037

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470--
Protein Sequence
MESVSVTVSSFISPSFALNVCPLKLSPVFSLPSFSSFVSNASVAAASPQPKNSAPTRRRSSKPTKNLTLTTPTTPEATNSAVPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPRS
Secondary Structure (PSIPRED)
cccEEEEEEEcccHHHHHHccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHHHcccEEEEEEEcccccEEEEcccEEEccccccccccccccEEEEccccHHHHHHHccHHHHHHHHHHHHcccEEEEEcccHHHHcccccccccccEEEcccccccccccEEEEccEEEEccEEcccccccHHHHHHHHHHHHccHHHHHHHHHHccccccccHHHHHHHcccccccccccEEEEEccccccHHHHHHHHHHHHHcccEEEEEEEcccccEEcccccEEEEcccccccccccccEEEEcccHHHHHHHHccHHHHHHHHHHHHcccEEEEEccHHHHHHHccccccccEEEcccccccccccEEEcccEEEcccEEccccccHHHHHHHHHHHHHccHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEHHHHcHHHHHcccccccccccccccccccccHccccccccccccccccccccccccccccccccccHHHHcccccccEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEccccccEEcccccEEcccEEHHHHHHccccEEEEccccccHHHHcccHHHHHHHHHHHHccccEEEEEccHHHHHHHcccccccEEEcccccHHHccccccccccEEEEccEEEEccHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccccEEEcccHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEccccccEEcccccEEcccEEHHHHccccccEEEEcccHHHHHHHHHcHHHHHHHHHHHHcccEEEEEccccHHHHHcccccccEEcccHHHHHHHccccEccccEEEcccEEEccccccHHHHHHHHHHHHccHHHHHHHHcccEEccccc
Coil and Loop (DISEMBL)
MESVSVTVSsfispsfalnvcplklspvfslpsfssfvsnasvaaaspqpknsaptrrrsskptknltlttpttpeatnsavppkkvlvpvgfgteeMEAVIIVDVLRRAGAQvtmasvepqleveassgtrlvadtsisncshQVFDlialpggmpgsvrlrDCEILKKITSKQAEEKRLYGAicaapavtllpwgllrrkqitchpaftdklptfwavksnihvsgevttsrgpgtsFEFALCLVEQLFGESVAKEIGELLLMHnadnslkkeefnevewffdrmprvlipiangseeiEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIilpggvagaERLQKSRILKKLLKEQKVAGRIygavcsspivlhkhgllkakkatahpsvigkltnevVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGlvfeyprs
Flexible Loop (DISEMBL)
MESVSVTVSSFISPSFALNVCPLKLSPVFSLPSFSSFVSNASVaaaspqpknsaptrrrsskptknltlttpttpeatnsavppkKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMasvepqleveASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLipiangseeiEIVTIVDILRRAKVDVVVASVerstqivasqgvkiiaDKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKakkatahpsvigkltnevvngtkVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSvaeglvfeyprs
Low Complexity Region (SEG)
MESVSVTVSSFISPSFALNVCplklspvfslpsfssfvsnasvaaaspQPKNSAPTRRRsskptknltlttpttpeatnsaVPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVlhkhgllkakkatahPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPRS
Disordered region (IsUnstruct)
*******VSSFISPSFALNVCPLKLSPVFSLPSFSSF************************************************KVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASV***********TRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFE****
Disordered Region (DISOPRED)
****S*T*SSFISPSFALNVCPLKLSPVFSLPSFSSFV************************************************VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYP**
Disordered Region (DISEMBL)
*********SFISPSFALNVCPLKLSPVFSLPSFSSFVSN************************KNLTLTTPTTPEATNSAVPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPRS
Disordered Region (DISPRO)
**SVSVTVSSFISPSFALNVCPLKLSPVFSLPSFSSF********************************************VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYP**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESVSVTVSSFISPSFALNVCPLKLSPVFSLPSFSSFVSNASVAAASPQPKNSAPTRRRSSKPTKNLTLTTPTTPEATNSAVPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	472	2.2.26 [Sep-21-2011]
Q8VY09	472	Protein DJ-1 homolog C OS	yes	no	0.853	0.853	0.663	1e-157
Q9MAH3	438	Protein DJ-1 homolog B OS	no	no	0.790	0.851	0.489	1e-100
Q9FPF0	392	Protein DJ-1 homolog A OS	no	no	0.790	0.951	0.458	7e-88
Q5XJ36	189	Protein DJ-1 OS=Danio rer	yes	no	0.385	0.962	0.379	2e-26
Q7TQ35	189	Protein DJ-1 OS=Mesocrice	N/A	no	0.385	0.962	0.374	1e-25
Q99LX0	189	Protein DJ-1 OS=Mus muscu	yes	no	0.385	0.962	0.379	5e-25
Q8UW59	189	Protein DJ-1 OS=Gallus ga	yes	no	0.385	0.962	0.368	1e-24
O88767	189	Protein DJ-1 OS=Rattus no	yes	no	0.385	0.962	0.374	2e-24
Q95LI9	189	Protein DJ-1 OS=Chloroceb	N/A	no	0.385	0.962	0.368	5e-24
Q99497	189	Protein DJ-1 OS=Homo sapi	yes	no	0.385	0.962	0.368	6e-24

>sp|Q8VY09|DJ1C_ARATH Protein DJ-1 homolog C OS=Arabidopsis thaliana GN=DJ1C PE=2 SV=1

 Score =  555 bits (1431), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 268/404 (66%), Positives = 322/404 (79%), Gaps = 1/404 (0%)

Query: 69  LTTPTTPEATNSAVPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEAS 128
           +TT  +     S+   KKVLVP+G+GTEE+EAV++VDVLRRAGA VT+ASVE +LEVE S
Sbjct: 68  VTTLDSDVGVGSSATTKKVLVPIGYGTEEIEAVVLVDVLRRAGADVTVASVEQKLEVEGS 127

Query: 129 SGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAA 188
           SGTRL+AD  IS C+ QV+DL+ALPGGMPG+VRLRDCEIL+KI  +QAE+KRLYGAI  A
Sbjct: 128 SGTRLLADVLISKCADQVYDLVALPGGMPGAVRLRDCEILEKIMKRQAEDKRLYGAISMA 187

Query: 189 PAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVE 248
           PA+TLLPWGLL RK+ T HPAF  KLPTFWAVK+NI +SGE+TTSRGPGTSF+FAL L E
Sbjct: 188 PAITLLPWGLLTRKRTTGHPAFFGKLPTFWAVKTNIQISGELTTSRGPGTSFQFALSLAE 247

Query: 249 QLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVD 308
           QLFGE+ AK I E LL+ +   + K +EFN ++W  D  PRVLIP+ANGSE +E+V+I D
Sbjct: 248 QLFGETTAKSIEEFLLLRDGYQNPKNKEFNSIDWSLDHTPRVLIPVANGSEAVELVSIAD 307

Query: 309 ILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKS 368
           +LRRAKVDV V+SVERS +I A QG KII DK I +AAES YDLIILPGG  G+ERLQKS
Sbjct: 308 VLRRAKVDVTVSSVERSLRITAFQGTKIITDKLIGEAAESSYDLIILPGGHTGSERLQKS 367

Query: 369 RILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGK-LTNEVVNGTKVV 427
           +ILKKLL+EQ  +GRIYGA  SS  VLHKHGLLK K+ T +PS   + +  +++ G +VV
Sbjct: 368 KILKKLLREQHESGRIYGATNSSSTVLHKHGLLKEKRTTVYPSESDEPMNQQMIEGAEVV 427

Query: 428 VDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPR 471
           +DG VITS GLA V  F+LAIVSK FGHAR RSV+EGLV EYPR
Sbjct: 428 IDGNVITSLGLATVTKFSLAIVSKLFGHARARSVSEGLVHEYPR 471

Plays an essential role in chloroplast development and is required for chloroplast integrity and viability.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9MAH3|DJ1B_ARATH Protein DJ-1 homolog B OS=Arabidopsis thaliana GN=DJ1B PE=2 SV=1

 Score =  366 bits (939), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/376 (48%), Positives = 262/376 (69%), Gaps = 3/376 (0%)

Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           KKVL+PV  GTE  EAV+++DVLRR GA VT+ASVE Q+ V+A  G ++VADT +S+ + 
Sbjct: 53  KKVLIPVAHGTEPFEAVVMIDVLRRGGADVTVASVENQVGVDACHGIKMVADTLLSDITD 112

Query: 145 QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQI 204
            VFDLI LPGG+PG   L++C+ L+K+  KQ  + RL  AIC APA+    WGLL  K+ 
Sbjct: 113 SVFDLIMLPGGLPGGETLKNCKPLEKMVKKQDTDGRLNAAICCAPALAFGTWGLLEGKKA 172

Query: 205 TCHPAFTDKLPTF-WAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEI-GEL 262
           TC+P F +KL     AV+S + + G++ TSRGPGT+ EF++ LVEQL G+  A E+ G L
Sbjct: 173 TCYPVFMEKLAACATAVESRVEIDGKIVTSRGPGTTMEFSVTLVEQLLGKEKAVEVSGPL 232

Query: 263 LLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASV 322
           ++  N  +     E N+V W F+  P++L+PIA+GSEE+E V I+D+L+RAK +VVVA++
Sbjct: 233 VMRPNPGDEYTITELNQVSWSFEGTPQILVPIADGSEEMEAVAIIDVLKRAKANVVVAAL 292

Query: 323 ERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAG 382
             S ++VAS+ VK++AD  + +A ++ YDLI+LPGG+ GAE    S  L  +LK+Q  + 
Sbjct: 293 GNSLEVVASRKVKLVADVLLDEAEKNSYDLIVLPGGLGGAEAFASSEKLVNMLKKQAESN 352

Query: 383 RIYGAVCSSP-IVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLANV 441
           + YGA+C+SP +V   HGLLK KKATA P++  KLT++     +V+VDG +ITSRG    
Sbjct: 353 KPYGAICASPALVFEPHGLLKGKKATAFPAMCSKLTDQSHIEHRVLVDGNLITSRGPGTS 412

Query: 442 IDFALAIVSKFFGHAR 457
           ++FALAIV KF+G  +
Sbjct: 413 LEFALAIVEKFYGREK 428

May be involved in oxidative stress response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FPF0|DJ1A_ARATH Protein DJ-1 homolog A OS=Arabidopsis thaliana GN=DJ1A PE=1 SV=1

 Score =  324 bits (831), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 173/377 (45%), Positives = 247/377 (65%), Gaps = 4/377 (1%)

Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K VL+P+  GTE +EAV ++ VLRR GA VT+ASVE Q+ V+A  G ++VADT +S+ + 
Sbjct: 6   KTVLIPIAHGTEPLEAVAMITVLRRGGADVTVASVETQVGVDACHGIKMVADTLLSDITD 65

Query: 145 QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQI 204
            VFDLI LPGG+PG   L++C+ L+ +  KQ  + RL  AIC APA+ L  WGLL  K+ 
Sbjct: 66  SVFDLIVLPGGLPGGETLKNCKSLENMVKKQDSDGRLNAAICCAPALALGTWGLLEGKKA 125

Query: 205 TCHPAFTDKLPTFW--AVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGEL 262
           T +P F +KL      AV+S + + G + TSRGPGT+ EF++ L+EQLFG+  A E+  +
Sbjct: 126 TGYPVFMEKLAATCATAVESRVQIDGRIVTSRGPGTTIEFSITLIEQLFGKEKADEVSSI 185

Query: 263 LLMH-NADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVAS 321
           LL+  N        E N+  W F+  P++L+PIA  SEEIE + +VDILRRAK +VV+A+
Sbjct: 186 LLLRPNPGEEFTFTELNQTNWSFEDTPQILVPIAEESEEIEAIALVDILRRAKANVVIAA 245

Query: 322 VERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVA 381
           V  S ++  S+  K++A+  + + AE  +DLI+LPGG+ GA+R      L  +L++Q  A
Sbjct: 246 VGNSLEVEGSRKAKLVAEVLLDEVAEKSFDLIVLPGGLNGAQRFASCEKLVNMLRKQAEA 305

Query: 382 GRIYGAVCSSP-IVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLAN 440
            + YG +C+SP  V   +GLLK KKAT HP V  KL+++     +VVVDG VITSR    
Sbjct: 306 NKPYGGICASPAYVFEPNGLLKGKKATTHPVVSDKLSDKSHIEHRVVVDGNVITSRAPGT 365

Query: 441 VIDFALAIVSKFFGHAR 457
            ++F+LAIV KF+G  +
Sbjct: 366 AMEFSLAIVEKFYGREK 382

Involved in oxidative stress response. Confers protection against diverse stresses by binding both CSD1 and GPX2 and mediating the cytosolic activation of the Cu-Zn-dependent superoxide dismutase activity of CSD1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5XJ36|PARK7_DANRE Protein DJ-1 OS=Danio rerio GN=park7 PE=2 SV=1

 Score =  120 bits (302), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/187 (37%), Positives = 105/187 (56%), Gaps = 5/187 (2%)

Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K+ LV +  G EEME VI VDV+RRAG  VT+A +  +  V+ S    +  D+S+ +   
Sbjct: 4   KRALVILAKGAEEMETVIPVDVMRRAGIAVTVAGLAGKEPVQCSREVMICPDSSLEDAHK 63

Query: 145 QV-FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
           Q  +D++ LPGG+ G+  L +   +K++   Q   K L  AICA P   LL  G+     
Sbjct: 64  QGPYDVVLLPGGLLGAQNLSESPAVKEVLKDQEGRKGLIAAICAGP-TALLAHGIAYGST 122

Query: 204 ITCHPAFTDKL---PTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
           +T HP   DK+     +   ++ +   G V TSRGPGTSFEFAL +VE+L G  VA ++ 
Sbjct: 123 VTTHPGAKDKMMAGDHYKYSEARVQKDGNVITSRGPGTSFEFALTIVEELMGAEVAAQVK 182

Query: 261 ELLLMHN 267
             L++ +
Sbjct: 183 APLILKD 189

Protects cells against oxidative stress and cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone (By similarity). Protects dopaminergic neurons against cell death arising from oxidative stress and proteasome inhibition, probably by a TP53/p53-dependent mechanism.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q7TQ35|PARK7_MESAU Protein DJ-1 OS=Mesocricetus auratus GN=PARK7 PE=1 SV=1

 Score =  118 bits (295), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/187 (37%), Positives = 106/187 (56%), Gaps = 5/187 (2%)

Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K+ LV +  G EEME VI VD++RRAG +VT+A +  +  V+ S    +  DTS+ +   
Sbjct: 4   KRALVILAKGAEEMETVIPVDIMRRAGIKVTVAGLAGKDPVQCSRDVMICPDTSLEDAKK 63

Query: 145 QV-FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
           Q  +D++ LPGG  G+  L +  ++K+I  +Q   K L  AICA P   LL   +    +
Sbjct: 64  QGPYDVVVLPGGNLGAQNLSESPVVKEILKEQESRKGLIAAICAGP-TALLAHEIGFGSK 122

Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
           +T HP   DK+     +   +S +   G + TSRGPGTSFEFAL +VE L G+  A ++ 
Sbjct: 123 VTTHPGAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALSGKEAADQVK 182

Query: 261 ELLLMHN 267
             L++ +
Sbjct: 183 APLVLKD 189

Protects cells against oxidative stress and cell death. Plays a role in regulating expression or stability of the mitochondrial uncoupling proteins SLC25A14 and SLC25A27 in dopaminergic neurons of the substantia nigra pars compacta and attenuates the oxidative stress induced by calcium entry into the neurons via L-type channels during pacemaking. Eliminates hydrogen peroxide and protects cells against hydrogen peroxide-induced cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Stabilizes NFE2L2 by preventing its association with KEAP1 and its subsequent ubiquitination. Binds to OTUD7B and inhibits its deubiquitinating activity. Enhances RELA nuclear translocation. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Mesocricetus auratus (taxid: 10036)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q99LX0|PARK7_MOUSE Protein DJ-1 OS=Mus musculus GN=Park7 PE=1 SV=1

 Score =  116 bits (290), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/187 (37%), Positives = 107/187 (57%), Gaps = 5/187 (2%)

Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K+ LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  DTS+ +   
Sbjct: 4   KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVMICPDTSLEDAKT 63

Query: 145 QV-FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
           Q  +D++ LPGG  G+  L +  ++K+I  +Q   K L  AICA P   LL   +    +
Sbjct: 64  QGPYDVVVLPGGNLGAQNLSESPMVKEILKEQESRKGLIAAICAGP-TALLAHEVGFGCK 122

Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
           +T HP   DK+     +   +S +   G + TSRGPGTSFEFAL +VE L G+ +A ++ 
Sbjct: 123 VTTHPLAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALVGKDMANQVK 182

Query: 261 ELLLMHN 267
             L++ +
Sbjct: 183 APLVLKD 189

Protects cells against oxidative stress and cell death. Plays a role in regulating expression or stability of the mitochondrial uncoupling proteins SLC25A14 and SLC25A27 in dopaminergic neurons of the substantia nigra pars compacta and attenuates the oxidative stress induced by calcium entry into the neurons via L-type channels during pacemaking. Eliminates hydrogen peroxide and protects cells against hydrogen peroxide-induced cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Stabilizes NFE2L2 by preventing its association with KEAP1 and its subsequent ubiquitination. Binds to OTUD7B and inhibits its deubiquitinating activity. Enhances RELA nuclear translocation. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q8UW59|PARK7_CHICK Protein DJ-1 OS=Gallus gallus GN=PARK7 PE=2 SV=1

 Score =  115 bits (287), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 102/187 (54%), Gaps = 5/187 (2%)

Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K+ LV +  G EEME VI  DV+RRAG +VT+A +  +  V+ S    +  D S+ +   
Sbjct: 4   KRALVILAKGAEEMETVIPTDVMRRAGIKVTVAGLTGKEPVQCSRDVLICPDASLEDARK 63

Query: 145 QV-FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
           +  +D+I LPGG  G+  L +   +K I   Q   K L  AICA P   LL  G+    +
Sbjct: 64  EGPYDVIVLPGGNLGAQNLSESAAVKDILKDQESRKGLIAAICAGP-TALLAHGIGFGSK 122

Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
           +  HP   DK+     +   +S +   G + TSRGPGTSFEF L +VE L G+ VA+++ 
Sbjct: 123 VITHPLAKDKMMNGAHYCYSESRVEKDGNILTSRGPGTSFEFGLAIVEALMGKEVAEQVK 182

Query: 261 ELLLMHN 267
             L++ +
Sbjct: 183 APLILKD 189

Protects cells against oxidative stress and cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|O88767|PARK7_RAT Protein DJ-1 OS=Rattus norvegicus GN=Park7 PE=1 SV=1

 Score =  114 bits (285), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/187 (37%), Positives = 106/187 (56%), Gaps = 5/187 (2%)

Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K+ LV +  G EEME VI VD++RRAG +VT+A +  +  V+ S    +  DTS+     
Sbjct: 4   KRALVILAKGAEEMETVIPVDIMRRAGIKVTVAGLAGKDPVQCSRDVVICPDTSLEEAKT 63

Query: 145 QV-FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
           Q  +D++ LPGG  G+  L +  ++K+I  +Q   K L  AICA P   LL   +    +
Sbjct: 64  QGPYDVVVLPGGNLGAQNLSESALVKEILKEQENRKGLIAAICAGP-TALLAHEVGFGCK 122

Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
           +T HP   DK+     +   +S +   G + TSRGPGTSFEFAL +VE L G+ +A ++ 
Sbjct: 123 VTSHPLAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALSGKDMANQVK 182

Query: 261 ELLLMHN 267
             L++ +
Sbjct: 183 APLVLKD 189

Protects cells against oxidative stress and cell death. Plays a role in regulating expression or stability of the mitochondrial uncoupling proteins SLC25A14 and SLC25A27 in dopaminergic neurons of the substantia nigra pars compacta and attenuates the oxidative stress induced by calcium entry into the neurons via L-type channels during pacemaking. Eliminates hydrogen peroxide and protects cells against hydrogen peroxide-induced cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Stabilizes NFE2L2 by preventing its association with KEAP1 and its subsequent ubiquitination. Binds to OTUD7B and inhibits its deubiquitinating activity. Enhances RELA nuclear translocation. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q95LI9|PARK7_CHLAE Protein DJ-1 OS=Chlorocebus aethiops GN=PARK7 PE=2 SV=1

 Score =  112 bits (281), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 105/187 (56%), Gaps = 5/187 (2%)

Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K+ LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   
Sbjct: 4   KRALVILAKGAEEMETVIPVDVMRRAGIKVTIAGLAGKDPVQCSRDVVICPDASLEDAKK 63

Query: 145 QV-FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
           +  +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P   LL   +    +
Sbjct: 64  EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSK 122

Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
           +T HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++ 
Sbjct: 123 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182

Query: 261 ELLLMHN 267
             L++ +
Sbjct: 183 APLVLKD 189

Protects cells against oxidative stress and cell death. Plays a role in regulating expression or stability of the mitochondrial uncoupling proteins SLC25A14 and SLC25A27 in dopaminergic neurons of the substantia nigra pars compacta and attenuates the oxidative stress induced by calcium entry into the neurons via L-type channels during pacemaking. Eliminates hydrogen peroxide and protects cells against hydrogen peroxide-induced cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Stabilizes NFE2L2 by preventing its association with KEAP1 and its subsequent ubiquitination. Binds to OTUD7B and inhibits its deubiquitinating activity. Enhances RELA nuclear translocation. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Chlorocebus aethiops (taxid: 9534)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q99497|PARK7_HUMAN Protein DJ-1 OS=Homo sapiens GN=PARK7 PE=1 SV=2

 Score =  112 bits (280), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 105/187 (56%), Gaps = 5/187 (2%)

Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K+ LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   
Sbjct: 4   KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63

Query: 145 QV-FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
           +  +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P   LL   +    +
Sbjct: 64  EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSK 122

Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
           +T HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++ 
Sbjct: 123 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182

Query: 261 ELLLMHN 267
             L++ +
Sbjct: 183 APLVLKD 189

Protects cells against oxidative stress and cell death. Plays a role in regulating expression or stability of the mitochondrial uncoupling proteins SLC25A14 and SLC25A27 in dopaminergic neurons of the substantia nigra pars compacta and attenuates the oxidative stress induced by calcium entry into the neurons via L-type channels during pacemaking. Eliminates hydrogen peroxide and protects cells against hydrogen peroxide-induced cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Stabilizes NFE2L2 by preventing its association with KEAP1 and its subsequent ubiquitination. Binds to OTUD7B and inhibits its deubiquitinating activity. Enhances RELA nuclear translocation. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	472
225428824	447	PREDICTED: uncharacterized protein LOC10	0.891	0.941	0.758	0.0
255555439	477	conserved hypothetical protein [Ricinus	0.828	0.819	0.782	1e-180
224105563	374	predicted protein [Populus trichocarpa]	0.792	1.0	0.792	1e-175
449438398	473	PREDICTED: uncharacterized protein LOC10	0.875	0.873	0.721	1e-174
388500380	453	unknown [Lotus japonicus]	0.936	0.975	0.667	1e-169
357475343	451	Protein thiJ [Medicago truncatula] gi|35	0.819	0.858	0.737	1e-165
356521514	446	PREDICTED: uncharacterized protein LOC10	0.877	0.928	0.684	1e-165
297798508	472	DJ-1 family protein [Arabidopsis lyrata	0.853	0.853	0.660	1e-156
22329146	472	class I glutamine amidotransferase domai	0.853	0.853	0.663	1e-155
218197114	412	hypothetical protein OsI_20655 [Oryza sa	0.822	0.941	0.649	1e-148

>gi|225428824|ref|XP_002282255.1| PREDICTED: uncharacterized protein LOC100258951 [Vitis vinifera] gi|297741268|emb|CBI32399.3| unnamed protein product [Vitis vinifera]

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/430 (75%), Positives = 370/430 (86%), Gaps = 9/430 (2%)

Query: 43  VAAASPQPKNSAPTRRRSSKPTKNLTLTTPTTPEATNSAVPPKKVLVPVGFGTEEMEAVI 102
           VA  S   K   P  +RSSK  K L  TT T+       +PPKKVLVP+G+GTEEMEAVI
Sbjct: 27  VALTSTPSKTHTP--KRSSKSAKTLFPTTTTS-------LPPKKVLVPIGYGTEEMEAVI 77

Query: 103 IVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 162
           +VDVLRRAGA V +ASVEPQLE+EASSGTRLVADTSIS CS ++FDLIALPGGMPGS RL
Sbjct: 78  LVDVLRRAGANVVVASVEPQLEIEASSGTRLVADTSISTCSDEIFDLIALPGGMPGSARL 137

Query: 163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKS 222
           RD EIL+KITSK AEEKRLYGAICAAPA+TL PWGLLRRKQ+TCHPAF DKLPTF AVKS
Sbjct: 138 RDSEILRKITSKHAEEKRLYGAICAAPAITLQPWGLLRRKQMTCHPAFMDKLPTFRAVKS 197

Query: 223 NIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEW 282
           N+ VSGE+TTSRGPGT+FEFAL LV+QLFGESVAKE+GELLLM  A+++ KKEEFNEVEW
Sbjct: 198 NLQVSGELTTSRGPGTAFEFALALVDQLFGESVAKEVGELLLMRTAEDNHKKEEFNEVEW 257

Query: 283 FFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSI 342
             D  P VL+P+ANGSEEIE+VT+VDILRRAKVDVVVASVE+S QI+AS+G+K+IADKSI
Sbjct: 258 SVDHSPHVLVPVANGSEEIEVVTVVDILRRAKVDVVVASVEKSLQILASRGIKLIADKSI 317

Query: 343 SDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLK 402
            +AAES+YDLIILPGG+AGAERL KS++LKK+LKEQ  AGRIYGA+CSSP VLH+ GLLK
Sbjct: 318 DNAAESIYDLIILPGGIAGAERLHKSKVLKKMLKEQGSAGRIYGAICSSPTVLHRQGLLK 377

Query: 403 AKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVA 462
            K+ATAHPSV  KLTNEVV G +VV+DGK+ITSRGLA  I+FALAIVSK F HAR RSVA
Sbjct: 378 GKRATAHPSVASKLTNEVVEGARVVIDGKLITSRGLATAIEFALAIVSKLFSHARARSVA 437

Query: 463 EGLVFEYPRS 472
           EGLVFEYP+S
Sbjct: 438 EGLVFEYPKS 447

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555439|ref|XP_002518756.1| conserved hypothetical protein [Ricinus communis] gi|223542137|gb|EEF43681.1| conserved hypothetical protein [Ricinus communis]

 Score =  636 bits (1640), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 306/391 (78%), Positives = 345/391 (88%)

Query: 82  VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISN 141
           V  KKVLVP+GFGTEEMEAVIIV+VLRRAGAQV +ASVEPQLE+EA+ GTRLVADTSIS 
Sbjct: 87  VTSKKVLVPIGFGTEEMEAVIIVNVLRRAGAQVIVASVEPQLEIEAAGGTRLVADTSIST 146

Query: 142 CSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRR 201
           CS++VFDL+ALPGGMPGS RLRDC+IL++ITSKQAEEKRLYGAIC+APAVTLLPWGLL+R
Sbjct: 147 CSNEVFDLVALPGGMPGSARLRDCKILQQITSKQAEEKRLYGAICSAPAVTLLPWGLLKR 206

Query: 202 KQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGE 261
           KQ TCHPAF DKLPTFWAVKSNI VSGE+TTSRGPGT F+FAL L EQLFGES+AKE+GE
Sbjct: 207 KQTTCHPAFMDKLPTFWAVKSNIQVSGELTTSRGPGTCFQFALSLSEQLFGESIAKEVGE 266

Query: 262 LLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVAS 321
            LLMH AD+  +K+EFNEVEW FD  P VLIP+ANG + IE+VTIVDILRRAKVDVVVAS
Sbjct: 267 FLLMHTADDMRRKDEFNEVEWSFDHKPHVLIPVANGCDVIEVVTIVDILRRAKVDVVVAS 326

Query: 322 VERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVA 381
           VE+S +I++S G KIIADK I DAA+S+YDLIILPG  AGA+RLQKSRILKKLLKEQ  A
Sbjct: 327 VEKSVKILSSLGTKIIADKLIGDAAKSIYDLIILPGETAGAKRLQKSRILKKLLKEQDAA 386

Query: 382 GRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLANV 441
           GRIYGAVCSS  VL   GLLK KKATAHPS   +LTNEVV+G KVV+DGK+ITS+GLA V
Sbjct: 387 GRIYGAVCSSISVLQSQGLLKDKKATAHPSFSSQLTNEVVDGAKVVIDGKLITSKGLATV 446

Query: 442 IDFALAIVSKFFGHARTRSVAEGLVFEYPRS 472
            DFA+AIVSK FG AR RSVAEGLVF+YP++
Sbjct: 447 TDFAMAIVSKLFGEARARSVAEGLVFDYPKT 477

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105563|ref|XP_002313856.1| predicted protein [Populus trichocarpa] gi|222850264|gb|EEE87811.1| predicted protein [Populus trichocarpa]

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 297/375 (79%), Positives = 337/375 (89%), Gaps = 1/375 (0%)

Query: 98  MEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMP 157
           MEAVIIVDVLRRAGA+V +ASVEPQLEVEA+ GTRLVADTSIS C+++VFDL+ALPGGMP
Sbjct: 1   MEAVIIVDVLRRAGAEVIVASVEPQLEVEAAGGTRLVADTSISKCANEVFDLVALPGGMP 60

Query: 158 GSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTF 217
           GS RLRDCE+L++ITSKQAE+KRLYGAICAAPA+TLLPWGLLRRKQ+T HPAF DKLPTF
Sbjct: 61  GSARLRDCEVLRQITSKQAEDKRLYGAICAAPAITLLPWGLLRRKQMTGHPAFMDKLPTF 120

Query: 218 WAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEF 277
           WAV S I VSGE+TTSRGPGTSFEFAL LV+QLFGESVAKE+G+LLLM   D++ +KEE+
Sbjct: 121 WAVASKIQVSGELTTSRGPGTSFEFALSLVDQLFGESVAKEVGQLLLMQADDDTQRKEEY 180

Query: 278 NEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKII 337
           N+VEW FD  PRVL+PIANGSEEIEIV IVDILRRAKVDVVVAS+E+S QI+AS+G+KI+
Sbjct: 181 NKVEWSFDHNPRVLLPIANGSEEIEIVAIVDILRRAKVDVVVASIEKSVQILASRGIKIV 240

Query: 338 ADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK 397
           ADK I DAAESVYDLIILPGG AGAERL KS++LKKLL+EQ  AGRIYGAVCSSP VLH+
Sbjct: 241 ADKLIGDAAESVYDLIILPGGNAGAERLHKSKVLKKLLQEQYTAGRIYGAVCSSPAVLHR 300

Query: 398 HGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHAR 457
            GLLK K+ATAHPSV+  L N V NG KVV+DGK+ITS+GL+ V DFALAIVSK FGHAR
Sbjct: 301 QGLLKDKRATAHPSVVTNLNN-VSNGAKVVIDGKLITSKGLSTVTDFALAIVSKLFGHAR 359

Query: 458 TRSVAEGLVFEYPRS 472
           TR VAEGLVF+YPRS
Sbjct: 360 TRCVAEGLVFDYPRS 374

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438398|ref|XP_004136975.1| PREDICTED: uncharacterized protein LOC101204195 [Cucumis sativus] gi|449495608|ref|XP_004159893.1| PREDICTED: uncharacterized protein LOC101229677 [Cucumis sativus]

 Score =  617 bits (1590), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 305/423 (72%), Positives = 354/423 (83%), Gaps = 10/423 (2%)

Query: 57  RRRSSKPTKNLTLTTP----TTPEATNSAVPP----KKVLVPVGFGTEEMEAVIIVDVLR 108
           R+ S+K TK L+ T+P    T+     S +PP    KKVLVP+GFGTEEMEAVII+DVLR
Sbjct: 51  RKLSAKATKALSPTSPPMLSTSVSMATSTIPPSMPRKKVLVPIGFGTEEMEAVIIIDVLR 110

Query: 109 RAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL 168
           RAGA VT+ASVE +LE+EAS+G +LVADT IS+CS++VFDL+ALPGGMPGSVRLRDCEIL
Sbjct: 111 RAGAAVTVASVESELEIEASAGVKLVADTLISSCSNEVFDLVALPGGMPGSVRLRDCEIL 170

Query: 169 KKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSG 228
           +KITS+QAEEKRLYGAICAAPAVTLLPWGLLRRKQ TCHPAFTDKLPTFWAV+S+I VSG
Sbjct: 171 RKITSRQAEEKRLYGAICAAPAVTLLPWGLLRRKQTTCHPAFTDKLPTFWAVQSSIQVSG 230

Query: 229 EVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMP 288
           E+TTSRGPGT+F FAL LVEQL+GESVAK++GELLLM +  +  +KEEFN+V+W  D  P
Sbjct: 231 ELTTSRGPGTTFGFALALVEQLYGESVAKDVGELLLMDSESDCPRKEEFNKVDWSVDHTP 290

Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAES 348
           RVLIPIANGS+ IE+VTI DILRRAKVDVV+ASVE+S QI+ S G K++ADK I +A ES
Sbjct: 291 RVLIPIANGSQGIELVTIADILRRAKVDVVIASVEKSLQILTSTGTKVVADKLIKEAVES 350

Query: 349 VYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATA 408
            YDLIILPGG A  ERL KSRILKK+LKEQ  A RIYGAVCSSP VL K GLLK K+A A
Sbjct: 351 TYDLIILPGGAAADERLNKSRILKKMLKEQDNAQRIYGAVCSSPAVLFKQGLLKDKRAVA 410

Query: 409 HPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFE 468
           HPS+  + T   V+  KV++DGK+ITS+G  NVIDFALA+VSK FGHAR RSVAEGLVFE
Sbjct: 411 HPSLETESTK--VDTAKVIIDGKLITSKGFYNVIDFALAVVSKLFGHARARSVAEGLVFE 468

Query: 469 YPR 471
           YPR
Sbjct: 469 YPR 471

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500380|gb|AFK38256.1| unknown [Lotus japonicus]

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 303/454 (66%), Positives = 361/454 (79%), Gaps = 12/454 (2%)

Query: 25  LSPVFSLPSFSSFVSNASVA----AASPQPKNSAPTRRRSSKPTKNLTLTTPTTPEATNS 80
           +S +F LP  S+ +S A+VA    A   +P  S    R + KP     LT   +P AT+S
Sbjct: 1   MSLLFLLPQPSTRLSPATVASTRSALGLKPSASIAPPRSTPKP-----LTISISPPATDS 55

Query: 81  A--VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTS 138
           A   P KKVL+P+GFGTEEMEA I++ VLR AGA VT+ASVEPQL++EA+ GT+LVADTS
Sbjct: 56  ANAAPQKKVLLPIGFGTEEMEAAILIHVLRHAGAHVTVASVEPQLQIEAAGGTKLVADTS 115

Query: 139 ISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGL 198
           IS CS Q+FDLIALPGGMPGS RLRDC++L+KIT KQAEE+RLYGAICAAPAVTLLPWGL
Sbjct: 116 ISECSDQIFDLIALPGGMPGSARLRDCDVLRKITCKQAEERRLYGAICAAPAVTLLPWGL 175

Query: 199 LRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKE 258
           L+RK+ TCHPAF   LPTFWAVKSNI VSGE+TTSRGP T+++FAL LV+QLFG+SVAKE
Sbjct: 176 LKRKKTTCHPAFFGDLPTFWAVKSNIQVSGELTTSRGPATTYQFALSLVQQLFGDSVAKE 235

Query: 259 IGELLLMHNADNSLKKEEFNEVEWFF-DRMPRVLIPIANGSEEIEIVTIVDILRRAKVDV 317
           + E LLM  AD++  K+EFNEVEW   +  P++LIPIA+GSEEIE VT++DILRRAK +V
Sbjct: 236 LAESLLMRTADDNRVKKEFNEVEWTVGNHPPKILIPIAHGSEEIEAVTLIDILRRAKANV 295

Query: 318 VVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKE 377
            VASVE++ +I ASQG KI+AD  ISDA ES +D+IILPGG+AGA++L KSRILKKLLKE
Sbjct: 296 KVASVEKTLEISASQGTKIVADVLISDAQESAHDMIILPGGIAGAQKLSKSRILKKLLKE 355

Query: 378 QKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRG 437
           Q  AGRIYGAVCSSP +LHK GLLK KKATAHPSV+ KL  E +    VV+DGK+ITS G
Sbjct: 356 QSSAGRIYGAVCSSPAILHKQGLLKDKKATAHPSVLDKLKEEAIKDADVVIDGKLITSEG 415

Query: 438 LANVIDFALAIVSKFFGHARTRSVAEGLVFEYPR 471
           LA V  F+LAIVSK FG  R RSVAEGLVFE+PR
Sbjct: 416 LATVTAFSLAIVSKLFGAGRARSVAEGLVFEFPR 449

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475343|ref|XP_003607957.1| Protein thiJ [Medicago truncatula] gi|355509012|gb|AES90154.1| Protein thiJ [Medicago truncatula]

 Score =  589 bits (1518), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 286/388 (73%), Positives = 328/388 (84%), Gaps = 1/388 (0%)

Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           KKVL+P+GFGTEEMEAVI++ VLRRAGA VT+ASVEPQL+VEA+SGT+LVAD SIS CS 
Sbjct: 63  KKVLLPIGFGTEEMEAVILIHVLRRAGAHVTVASVEPQLQVEAASGTKLVADASISECSD 122

Query: 145 QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQI 204
           Q+FDLIALPGGMPGS RLRDC+ L+ IT KQAEE RL+GAI AAPAVTLLPWGLL+RK+I
Sbjct: 123 QIFDLIALPGGMPGSARLRDCDALRIITCKQAEENRLFGAINAAPAVTLLPWGLLKRKKI 182

Query: 205 TCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLL 264
           TCHPAF  KLPTFWAVKSNI VS  +TTSRGPGT++ FAL LVEQLFGES+A+E+ E LL
Sbjct: 183 TCHPAFFHKLPTFWAVKSNIQVSNGLTTSRGPGTAYMFALTLVEQLFGESIAREVAEFLL 242

Query: 265 MHNADNSLKKEEFNEVEWFFDRM-PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVE 323
           M   D+++ K+EFNE++W      P VLIPIA+GSEEIE+VT++DILRRAK +VVVASVE
Sbjct: 243 MRTDDDNVSKKEFNEIDWSVGHHPPSVLIPIAHGSEEIEVVTLIDILRRAKANVVVASVE 302

Query: 324 RSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGR 383
           ++  ++ASQG KI+ADK ISD  ES +DLIILPGG AGAERL KSRILKKLLKEQ  AGR
Sbjct: 303 KTLGVMASQGTKIVADKLISDIQESAHDLIILPGGTAGAERLSKSRILKKLLKEQNSAGR 362

Query: 384 IYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVID 443
           IYGAVCSSP +LHK GLLK KKATAHPS + KL +  VN   VV+DGKVITS GLA V D
Sbjct: 363 IYGAVCSSPAILHKQGLLKDKKATAHPSALNKLKDGAVNDAVVVIDGKVITSEGLATVTD 422

Query: 444 FALAIVSKFFGHARTRSVAEGLVFEYPR 471
           FALAIVSK FG+ R RSVAEGLVFEYPR
Sbjct: 423 FALAIVSKLFGNGRARSVAEGLVFEYPR 450

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521514|ref|XP_003529400.1| PREDICTED: uncharacterized protein LOC100777134 [Glycine max]

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 286/418 (68%), Positives = 341/418 (81%), Gaps = 4/418 (0%)

Query: 55  PTRRRSSKPTKNLTLTTPTTPEATNSAVPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQV 114
           P R R+  P   L+L+ P T  A N+A+PPKKVLVP+G GTEEMEAVI++ VLRRAGA V
Sbjct: 31  PPRPRTLTPKPALSLSAPITTTAPNNAIPPKKVLVPIGLGTEEMEAVIMIHVLRRAGADV 90

Query: 115 TMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSK 174
           T+ASVEPQL+VEA+ GT+LVADT IS CS QVFDL+ALPGGMPGS RLRDC++L+KIT +
Sbjct: 91  TVASVEPQLQVEAAGGTKLVADTDISACSDQVFDLVALPGGMPGSARLRDCDVLRKITCR 150

Query: 175 QAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSR 234
           QAEE RLYGAICAAPAVTLLPWGLL++K+ITCHPAF D+LP FWAVKSN+ VS  +TTSR
Sbjct: 151 QAEENRLYGAICAAPAVTLLPWGLLKKKKITCHPAFYDRLPRFWAVKSNLQVSRGLTTSR 210

Query: 235 GPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFF-DRMPRVLIP 293
           GPGT+++FAL L EQLFG+SVA E+ E ++  N D+   K EFN+VEW      P VL+P
Sbjct: 211 GPGTTYQFALSLAEQLFGDSVANEVAESMV--NYDDHAAK-EFNKVEWSVGHHTPSVLVP 267

Query: 294 IANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLI 353
           +A+GSEEIE+VT+VDILRRAK  V+VASVE+S +++ASQG KI+AD  I DA ES +DLI
Sbjct: 268 VAHGSEEIEVVTVVDILRRAKAKVIVASVEKSLEVLASQGTKIVADILIGDAQESAHDLI 327

Query: 354 ILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVI 413
           ILPGG AGA+RL KSRILKKLLKEQ  A RIYGAVCSS  +L K GLLK K+ATAH S +
Sbjct: 328 ILPGGTAGAQRLSKSRILKKLLKEQNSAERIYGAVCSSLAILQKQGLLKDKRATAHASTL 387

Query: 414 GKLTNEVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPR 471
            KL ++ +NG KVV+DGK+ITS GLA V DFALAIVSK FG+ R RSVAEGLVFEYP+
Sbjct: 388 DKLKDKEINGAKVVIDGKLITSEGLATVTDFALAIVSKLFGNGRARSVAEGLVFEYPK 445

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798508|ref|XP_002867138.1| DJ-1 family protein [Arabidopsis lyrata subsp. lyrata] gi|297312974|gb|EFH43397.1| DJ-1 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 267/404 (66%), Positives = 325/404 (80%), Gaps = 1/404 (0%)

Query: 69  LTTPTTPEATNSAVPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEAS 128
           +TT  +     S+   +KVLVP+G+GTEE+EAV++VDVLRRAGA+VT+ASVE +L++EAS
Sbjct: 68  VTTSGSDVGVVSSATTRKVLVPIGYGTEEIEAVVLVDVLRRAGAEVTVASVEQKLDIEAS 127

Query: 129 SGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAA 188
           SGTRLVAD  IS C+ QV+DL+ALPGGMPG+VRLRDC+IL+KI  +QAE+KRLYGAI  A
Sbjct: 128 SGTRLVADVLISKCADQVYDLVALPGGMPGAVRLRDCKILEKIMKRQAEDKRLYGAISMA 187

Query: 189 PAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVE 248
           PA+TLLPWGLL RK+ T HPAF  KLPTFWAVK+NI +SGE+TTSRGPGTSF+FAL L E
Sbjct: 188 PAITLLPWGLLTRKRTTGHPAFFGKLPTFWAVKTNIQISGELTTSRGPGTSFQFALSLAE 247

Query: 249 QLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVD 308
           QLFGE+ AK + E LL+ +   + K +EF+ ++W  D  PRVLI +ANGSEE+E+VTI D
Sbjct: 248 QLFGETTAKSVEEFLLLRDGYQNPKNKEFSSIDWSLDHTPRVLISVANGSEEVEVVTIAD 307

Query: 309 ILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKS 368
           +LRRAKVDV VASVERS +I ASQG KII DK I +AAES YDLI+LPGG  G+ERLQKS
Sbjct: 308 VLRRAKVDVTVASVERSLRITASQGTKIITDKLIGEAAESSYDLIVLPGGHTGSERLQKS 367

Query: 369 RILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPS-VIGKLTNEVVNGTKVV 427
           +ILKKLL+EQ  +GRIYGA  SS  VLHKHGLLK K+ T +PS   G +  +++ G +VV
Sbjct: 368 KILKKLLREQHKSGRIYGAANSSSTVLHKHGLLKEKRTTVYPSETDGPMNQQMIEGAEVV 427

Query: 428 VDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPR 471
           +DG VITS GLA V  F+LAIVSK FGHAR RSV+EGLV EYPR
Sbjct: 428 IDGNVITSLGLATVTKFSLAIVSKLFGHARARSVSEGLVHEYPR 471

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329146|ref|NP_195128.2| class I glutamine amidotransferase domain-containing protein [Arabidopsis thaliana] gi|18377684|gb|AAL66992.1| unknown protein [Arabidopsis thaliana] gi|20465753|gb|AAM20345.1| unknown protein [Arabidopsis thaliana] gi|332660910|gb|AEE86310.1| class I glutamine amidotransferase domain-containing protein [Arabidopsis thaliana]

 Score =  555 bits (1431), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 268/404 (66%), Positives = 322/404 (79%), Gaps = 1/404 (0%)

Query: 69  LTTPTTPEATNSAVPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEAS 128
           +TT  +     S+   KKVLVP+G+GTEE+EAV++VDVLRRAGA VT+ASVE +LEVE S
Sbjct: 68  VTTLDSDVGVGSSATTKKVLVPIGYGTEEIEAVVLVDVLRRAGADVTVASVEQKLEVEGS 127

Query: 129 SGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAA 188
           SGTRL+AD  IS C+ QV+DL+ALPGGMPG+VRLRDCEIL+KI  +QAE+KRLYGAI  A
Sbjct: 128 SGTRLLADVLISKCADQVYDLVALPGGMPGAVRLRDCEILEKIMKRQAEDKRLYGAISMA 187

Query: 189 PAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVE 248
           PA+TLLPWGLL RK+ T HPAF  KLPTFWAVK+NI +SGE+TTSRGPGTSF+FAL L E
Sbjct: 188 PAITLLPWGLLTRKRTTGHPAFFGKLPTFWAVKTNIQISGELTTSRGPGTSFQFALSLAE 247

Query: 249 QLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVD 308
           QLFGE+ AK I E LL+ +   + K +EFN ++W  D  PRVLIP+ANGSE +E+V+I D
Sbjct: 248 QLFGETTAKSIEEFLLLRDGYQNPKNKEFNSIDWSLDHTPRVLIPVANGSEAVELVSIAD 307

Query: 309 ILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKS 368
           +LRRAKVDV V+SVERS +I A QG KII DK I +AAES YDLIILPGG  G+ERLQKS
Sbjct: 308 VLRRAKVDVTVSSVERSLRITAFQGTKIITDKLIGEAAESSYDLIILPGGHTGSERLQKS 367

Query: 369 RILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGK-LTNEVVNGTKVV 427
           +ILKKLL+EQ  +GRIYGA  SS  VLHKHGLLK K+ T +PS   + +  +++ G +VV
Sbjct: 368 KILKKLLREQHESGRIYGATNSSSTVLHKHGLLKEKRTTVYPSESDEPMNQQMIEGAEVV 427

Query: 428 VDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPR 471
           +DG VITS GLA V  F+LAIVSK FGHAR RSV+EGLV EYPR
Sbjct: 428 IDGNVITSLGLATVTKFSLAIVSKLFGHARARSVSEGLVHEYPR 471

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218197114|gb|EEC79541.1| hypothetical protein OsI_20655 [Oryza sativa Indica Group]

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 252/388 (64%), Positives = 309/388 (79%)

Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           KKVL+P+  GTEEMEAVI+  VLRRAGA VT+ASVE  LEVEAS G+ +VAD  I+ C+ 
Sbjct: 25  KKVLLPIAMGTEEMEAVILAGVLRRAGADVTLASVEDGLEVEASRGSHIVADKRIAACAD 84

Query: 145 QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQI 204
           QVFDL+ALPGGMPGSVRLRD  IL++IT +QAEEKRLYGAICAAPAV L+PWGL +RK+I
Sbjct: 85  QVFDLVALPGGMPGSVRLRDSAILQRITVRQAEEKRLYGAICAAPAVVLMPWGLHKRKKI 144

Query: 205 TCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLL 264
           TCHP+F + LPTF  V+SN+ VSGE+TTSRGPGT+F+FAL  VEQLFG   A+++   LL
Sbjct: 145 TCHPSFIEDLPTFRTVESNVQVSGELTTSRGPGTAFQFALSFVEQLFGPCKAEDMDNTLL 204

Query: 265 MHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVER 324
               DN  +  E NE+EW  D  P VLIPIANGSEE+EI+ + D+LRRA V+VV+ASVE+
Sbjct: 205 TKVDDNLERSIEVNEIEWTSDHNPHVLIPIANGSEEMEIIMLTDVLRRANVNVVLASVEK 264

Query: 325 STQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI 384
           ST IV SQ ++I+ADK ISDA+   YDLIILPGG AGAERL KS +LKKLLKEQK  GR+
Sbjct: 265 STSIVGSQRMRIVADKCISDASALEYDLIILPGGPAGAERLHKSSVLKKLLKEQKQTGRM 324

Query: 385 YGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDF 444
           YG +CSSP++L K GLL+ K  TAHPS++ +LT EV++ +KVV+DG +IT  GL  VIDF
Sbjct: 325 YGGICSSPVILQKQGLLQDKTVTAHPSIVNQLTCEVIDRSKVVIDGNLITGMGLGTVIDF 384

Query: 445 ALAIVSKFFGHARTRSVAEGLVFEYPRS 472
           +LAI+ KFFGH R + VA G+VFEYP+S
Sbjct: 385 SLAIIKKFFGHGRAKGVANGMVFEYPKS 412

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	472
TAIR|locus:2124246	472	DJ1C "DJ-1 homolog C" [Arabido	0.819	0.819	0.659	1e-130
TAIR|locus:2009650	438	DJ1B "AT1G53280" [Arabidopsis	0.790	0.851	0.462	1.3e-86
TAIR|locus:2086295	392	DJ1A "AT3G14990" [Arabidopsis	0.790	0.951	0.435	4.7e-80
UNIPROTKB|Q9KPQ8	205	VC_2308 "4-methyl-5(B-hydroxye	0.385	0.887	0.385	4.2e-31
TIGR_CMR|VC_2308	205	VC_2308 "4-methyl-5(B-hydroxye	0.385	0.887	0.385	4.2e-31
ZFIN|ZDB-GENE-041010-5	189	park7 "parkinson disease (auto	0.381	0.952	0.383	2.8e-27
GENEDB_PFALCIPARUM|PFF1335c	189	PFF1335c "4-methyl-5(B-hydroxy	0.385	0.962	0.380	4.5e-27
UNIPROTKB|Q7TQ35	189	PARK7 "Protein DJ-1" [Mesocric	0.381	0.952	0.378	1.2e-26
UNIPROTKB|D5M8S2	189	DJ-1 "Protein DJ-1" [Gallus ga	0.381	0.952	0.378	2.5e-26
MGI|MGI:2135637	189	Park7 "Parkinson disease (auto	0.381	0.952	0.383	3.2e-26

TAIR|locus:2124246 DJ1C "DJ-1 homolog C" [Arabidopsis thaliana (taxid:3702)]

 Score = 1282 (456.3 bits), Expect = 1.0e-130, P = 1.0e-130
 Identities = 256/388 (65%), Positives = 304/388 (78%)

Query:    85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
             KKVLVP+G+GTEE+EAV++VDVLRRAGA VT+ASVE +LEVE SSGTRL+AD  IS C+ 
Sbjct:    84 KKVLVPIGYGTEEIEAVVLVDVLRRAGADVTVASVEQKLEVEGSSGTRLLADVLISKCAD 143

Query:   145 QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQI 204
             QV+DL+ALPGGMPG+VRLRDCEIL+KI  +QAE+KRLYGAI  APA+TLLPWGLL RK+ 
Sbjct:   144 QVYDLVALPGGMPGAVRLRDCEILEKIMKRQAEDKRLYGAISMAPAITLLPWGLLTRKRT 203

Query:   205 TCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLL 264
             T HPAF  KLPTFWAVK+NI +SGE+TTSRGPGTSF+FAL L EQLFGE+ AK I E LL
Sbjct:   204 TGHPAFFGKLPTFWAVKTNIQISGELTTSRGPGTSFQFALSLAEQLFGETTAKSIEEFLL 263

Query:   265 MHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVER 324
             + +   + K +EFN ++W  D  PRVLIP+ANGSE +E+V+I D+LRRAKVDV V+SVER
Sbjct:   264 LRDGYQNPKNKEFNSIDWSLDHTPRVLIPVANGSEAVELVSIADVLRRAKVDVTVSSVER 323

Query:   325 STQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI 384
             S +I A QG KII DK I +AAES YDLIILPGG  G+ERLQKS+ILKKLL+EQ  +GRI
Sbjct:   324 SLRITAFQGTKIITDKLIGEAAESSYDLIILPGGHTGSERLQKSKILKKLLREQHESGRI 383

Query:   385 YGAVCSSPIVXXXXXXXXXXXXXXXPSVIGKLTNE-VVNGTKVVVDGKVITSRGLANVID 443
             YGA  SS  V               PS   +  N+ ++ G +VV+DG VITS GLA V  
Sbjct:   384 YGATNSSSTVLHKHGLLKEKRTTVYPSESDEPMNQQMIEGAEVVIDGNVITSLGLATVTK 443

Query:   444 FALAIVSKFFGHARTRSVAEGLVFEYPR 471
             F+LAIVSK FGHAR RSV+EGLV EYPR
Sbjct:   444 FSLAIVSKLFGHARARSVSEGLVHEYPR 471

GO:0009507 "chloroplast" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

TAIR|locus:2009650 DJ1B "AT1G53280" [Arabidopsis thaliana (taxid:3702)]

 Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
 Identities = 174/376 (46%), Positives = 252/376 (67%)

Query:    85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
             KKVL+PV  GTE  EAV+++DVLRR GA VT+ASVE Q+ V+A  G ++VADT +S+ + 
Sbjct:    53 KKVLIPVAHGTEPFEAVVMIDVLRRGGADVTVASVENQVGVDACHGIKMVADTLLSDITD 112

Query:   145 QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQI 204
              VFDLI LPGG+PG   L++C+ L+K+  KQ  + RL  AIC APA+    WGLL  K+ 
Sbjct:   113 SVFDLIMLPGGLPGGETLKNCKPLEKMVKKQDTDGRLNAAICCAPALAFGTWGLLEGKKA 172

Query:   205 TCHPAFTDKLPTF-WAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEI-GEL 262
             TC+P F +KL     AV+S + + G++ TSRGPGT+ EF++ LVEQL G+  A E+ G L
Sbjct:   173 TCYPVFMEKLAACATAVESRVEIDGKIVTSRGPGTTMEFSVTLVEQLLGKEKAVEVSGPL 232

Query:   263 LLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASV 322
             ++  N  +     E N+V W F+  P++L+PIA+GSEE+E V I+D+L+RAK +VVVA++
Sbjct:   233 VMRPNPGDEYTITELNQVSWSFEGTPQILVPIADGSEEMEAVAIIDVLKRAKANVVVAAL 292

Query:   323 ERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAG 382
               S ++VAS+ VK++AD  + +A ++ YDLI+LPGG+ GAE    S  L  +LK+Q  + 
Sbjct:   293 GNSLEVVASRKVKLVADVLLDEAEKNSYDLIVLPGGLGGAEAFASSEKLVNMLKKQAESN 352

Query:   383 RIYGAVCSSP-IVXXXXXXXXXXXXXXXPSVIGKLTNEVVNGTKVVVDGKVITSRGLANV 441
             + YGA+C+SP +V               P++  KLT++     +V+VDG +ITSRG    
Sbjct:   353 KPYGAICASPALVFEPHGLLKGKKATAFPAMCSKLTDQSHIEHRVLVDGNLITSRGPGTS 412

Query:   442 IDFALAIVSKFFGHAR 457
             ++FALAIV KF+G  +
Sbjct:   413 LEFALAIVEKFYGREK 428

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0046685 "response to arsenic-containing substance" evidence=RCA

TAIR|locus:2086295 DJ1A "AT3G14990" [Arabidopsis thaliana (taxid:3702)]

 Score = 804 (288.1 bits), Expect = 4.7e-80, P = 4.7e-80
 Identities = 164/377 (43%), Positives = 237/377 (62%)

Query:    85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
             K VL+P+  GTE +EAV ++ VLRR GA VT+ASVE Q+ V+A  G ++VADT +S+ + 
Sbjct:     6 KTVLIPIAHGTEPLEAVAMITVLRRGGADVTVASVETQVGVDACHGIKMVADTLLSDITD 65

Query:   145 QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQI 204
              VFDLI LPGG+PG   L++C+ L+ +  KQ  + RL  AIC APA+ L  WGLL  K+ 
Sbjct:    66 SVFDLIVLPGGLPGGETLKNCKSLENMVKKQDSDGRLNAAICCAPALALGTWGLLEGKKA 125

Query:   205 TCHPAFTDKLPTFWA--VKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGEL 262
             T +P F +KL    A  V+S + + G + TSRGPGT+ EF++ L+EQLFG+  A E+  +
Sbjct:   126 TGYPVFMEKLAATCATAVESRVQIDGRIVTSRGPGTTIEFSITLIEQLFGKEKADEVSSI 185

Query:   263 LLMH-NADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVAS 321
             LL+  N        E N+  W F+  P++L+PIA  SEEIE + +VDILRRAK +VV+A+
Sbjct:   186 LLLRPNPGEEFTFTELNQTNWSFEDTPQILVPIAEESEEIEAIALVDILRRAKANVVIAA 245

Query:   322 VERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVA 381
             V  S ++  S+  K++A+  + + AE  +DLI+LPGG+ GA+R      L  +L++Q  A
Sbjct:   246 VGNSLEVEGSRKAKLVAEVLLDEVAEKSFDLIVLPGGLNGAQRFASCEKLVNMLRKQAEA 305

Query:   382 GRIYGAVCSSPI-VXXXXXXXXXXXXXXXPSVIGKLTNEVVNGTKVVVDGKVITSRGLAN 440
              + YG +C+SP  V               P V  KL+++     +VVVDG VITSR    
Sbjct:   306 NKPYGGICASPAYVFEPNGLLKGKKATTHPVVSDKLSDKSHIEHRVVVDGNVITSRAPGT 365

Query:   441 VIDFALAIVSKFFGHAR 457
              ++F+LAIV KF+G  +
Sbjct:   366 AMEFSLAIVEKFYGREK 382

GO:0003824 "catalytic activity" evidence=ISS

GO:0009228 "thiamine biosynthetic process" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

UNIPROTKB|Q9KPQ8 VC_2308 "4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 71/184 (38%), Positives = 110/184 (59%)

Query:    85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
             K++LVPV  G+EEME VIIVD L RAG QVTMA+V  +L+V+ S G  L A+ ++  CS 
Sbjct:     7 KRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSA 66

Query:   145 QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQI 204
             + FD +ALPGG+ G+    D   L  +    +++ +L  AICA PA+           ++
Sbjct:    67 EAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARM 126

Query:   205 TCHPAFTDKLPTFWAVKSNI--HVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGEL 262
             TCHP F D +P+    +  +  + +  + TS+GPGT+ EFAL ++  L G  +A+ +   
Sbjct:   127 TCHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTALEFALAMIALLAGVELAQHVAAP 186

Query:   263 LLMH 266
             +++H
Sbjct:   187 MVLH 190

GO:0003824 "catalytic activity" evidence=ISS

GO:0009228 "thiamine biosynthetic process" evidence=ISS

TIGR_CMR|VC_2308 VC_2308 "4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 71/184 (38%), Positives = 110/184 (59%)

Query:    85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
             K++LVPV  G+EEME VIIVD L RAG QVTMA+V  +L+V+ S G  L A+ ++  CS 
Sbjct:     7 KRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSA 66

Query:   145 QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQI 204
             + FD +ALPGG+ G+    D   L  +    +++ +L  AICA PA+           ++
Sbjct:    67 EAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARM 126

Query:   205 TCHPAFTDKLPTFWAVKSNI--HVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGEL 262
             TCHP F D +P+    +  +  + +  + TS+GPGT+ EFAL ++  L G  +A+ +   
Sbjct:   127 TCHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTALEFALAMIALLAGVELAQHVAAP 186

Query:   263 LLMH 266
             +++H
Sbjct:   187 MVLH 190

GO:0003824 "catalytic activity" evidence=ISS

GO:0009228 "thiamine biosynthetic process" evidence=ISS

ZFIN|ZDB-GENE-041010-5 park7 "parkinson disease (autosomal recessive, early onset) 7" [Danio rerio (taxid:7955)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 71/185 (38%), Positives = 104/185 (56%)

Query:    85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
             K+ LV +  G EEME VI VDV+RRAG  VT+A +  +  V+ S    +  D+S+ +   
Sbjct:     4 KRALVILAKGAEEMETVIPVDVMRRAGIAVTVAGLAGKEPVQCSREVMICPDSSLEDAHK 63

Query:   145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
             Q  +D++ LPGG+ G+  L +   +K++   Q   K L  AICA P   LL  G+     
Sbjct:    64 QGPYDVVLLPGGLLGAQNLSESPAVKEVLKDQEGRKGLIAAICAGPTA-LLAHGIAYGST 122

Query:   204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
             +T HP   DK+     +   ++ +   G V TSRGPGTSFEFAL +VE+L G  VA ++ 
Sbjct:   123 VTTHPGAKDKMMAGDHYKYSEARVQKDGNVITSRGPGTSFEFALTIVEELMGAEVAAQVK 182

Query:   261 ELLLM 265
               L++
Sbjct:   183 APLIL 187

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=IEA;ISS

GO:0008233 "peptidase activity" evidence=IEA;ISS

GO:0070301 "cellular response to hydrogen peroxide" evidence=ISS

GO:0003729 "mRNA binding" evidence=ISS

GO:0043523 "regulation of neuron apoptotic process" evidence=ISS

GO:0050821 "protein stabilization" evidence=ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0034599 "cellular response to oxidative stress" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0060548 "negative regulation of cell death" evidence=ISS

GO:2000277 "positive regulation of oxidative phosphorylation uncoupler activity" evidence=ISS

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0007338 "single fertilization" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006954 "inflammatory response" evidence=IEA

GENEDB_PFALCIPARUM|PFF1335c PFF1335c "4-methyl-5(B-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme" [Plasmodium falciparum (taxid:5833)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 70/184 (38%), Positives = 99/184 (53%)

Query:    85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
             K  LV V  G+E++E + +VDVLRRAG  VT ASVE   +V   S   ++ADT+IS   +
Sbjct:     5 KTALVAVASGSEDVEYITVVDVLRRAGVHVTTASVEKSEQVCLQSKNVVLADTTISKVRN 64

Query:   145 QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQI 204
              ++D++ +PGGM GS  + +C     +  +Q    RLY AICAAP   L    L+   + 
Sbjct:    65 NIYDVLVIPGGMKGSNTISECSEFIDMLKEQKANNRLYAAICAAPETVLDRHSLIDDVEA 124

Query:   205 TCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLL 264
               +P+F          K  + VS    TS GPG++ EF L +VE L G  VA  +    L
Sbjct:   125 VAYPSFERNFKHIG--KGRVCVSKNCITSVGPGSAVEFGLKIVEHLLGRQVALSLASGFL 182

Query:   265 MHNA 268
             +H A
Sbjct:   183 LHPA 186

GO:0009228 "thiamine biosynthetic process" evidence=ISS

UNIPROTKB|Q7TQ35 PARK7 "Protein DJ-1" [Mesocricetus auratus (taxid:10036)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 70/185 (37%), Positives = 105/185 (56%)

Query:    85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
             K+ LV +  G EEME VI VD++RRAG +VT+A +  +  V+ S    +  DTS+ +   
Sbjct:     4 KRALVILAKGAEEMETVIPVDIMRRAGIKVTVAGLAGKDPVQCSRDVMICPDTSLEDAKK 63

Query:   145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
             Q  +D++ LPGG  G+  L +  ++K+I  +Q   K L  AICA P   LL   +    +
Sbjct:    64 QGPYDVVVLPGGNLGAQNLSESPVVKEILKEQESRKGLIAAICAGPTA-LLAHEIGFGSK 122

Query:   204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
             +T HP   DK+     +   +S +   G + TSRGPGTSFEFAL +VE L G+  A ++ 
Sbjct:   123 VTTHPGAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALSGKEAADQVK 182

Query:   261 ELLLM 265
               L++
Sbjct:   183 APLVL 187

GO:0003729 "mRNA binding" evidence=ISS

GO:0004601 "peroxidase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0007005 "mitochondrion organization" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

GO:0032091 "negative regulation of protein binding" evidence=ISS

GO:0034599 "cellular response to oxidative stress" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0043523 "regulation of neuron apoptotic process" evidence=ISS

GO:0050727 "regulation of inflammatory response" evidence=ISS

GO:0050821 "protein stabilization" evidence=ISS

GO:0060548 "negative regulation of cell death" evidence=ISS

GO:0070301 "cellular response to hydrogen peroxide" evidence=ISS

GO:2000277 "positive regulation of oxidative phosphorylation uncoupler activity" evidence=ISS

UNIPROTKB|D5M8S2 DJ-1 "Protein DJ-1" [Gallus gallus (taxid:9031)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 70/185 (37%), Positives = 102/185 (55%)

Query:    85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
             K+ LV +  G EEME VI  DV+RRAG +VT+A +  +  V+ S    +  D S+ +   
Sbjct:     4 KRALVILAKGAEEMETVIPTDVMRRAGIKVTVAGLTGKEPVQCSRDVLICPDASLEDARK 63

Query:   145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
             +  +D+I LPGG  G+  L +   +K I   Q   K L  AICA P   LL  G+    +
Sbjct:    64 EGPYDVIVLPGGNLGAQNLSESAAVKDILKDQESRKGLIAAICAGPTA-LLAHGIGFGSK 122

Query:   204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
             +T HP   DK+     +   +S +   G + TSRGPGTSFEF L +VE L G+ VA+++ 
Sbjct:   123 VTTHPLAKDKMMNGAHYCYSESRVEKDGNILTSRGPGTSFEFGLAIVEALMGKEVAEQVK 182

Query:   261 ELLLM 265
               L++
Sbjct:   183 APLIL 187

GO:0003729 "mRNA binding" evidence=IEA

GO:0004601 "peroxidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008344 "adult locomotory behavior" evidence=IEA

GO:0032091 "negative regulation of protein binding" evidence=IEA

GO:0042743 "hydrogen peroxide metabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0050727 "regulation of inflammatory response" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0051583 "dopamine uptake involved in synaptic transmission" evidence=IEA

GO:0051899 "membrane depolarization" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0060081 "membrane hyperpolarization" evidence=IEA

GO:0060765 "regulation of androgen receptor signaling pathway" evidence=IEA

GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA

GO:2000277 "positive regulation of oxidative phosphorylation uncoupler activity" evidence=IEA

GO:2001237 "negative regulation of extrinsic apoptotic signaling pathway" evidence=IEA

MGI|MGI:2135637 Park7 "Parkinson disease (autosomal recessive, early onset) 7" [Mus musculus (taxid:10090)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 71/185 (38%), Positives = 106/185 (57%)

Query:    85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
             K+ LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  DTS+ +   
Sbjct:     4 KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVMICPDTSLEDAKT 63

Query:   145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
             Q  +D++ LPGG  G+  L +  ++K+I  +Q   K L  AICA P   LL   +    +
Sbjct:    64 QGPYDVVVLPGGNLGAQNLSESPMVKEILKEQESRKGLIAAICAGPTA-LLAHEVGFGCK 122

Query:   204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
             +T HP   DK+     +   +S +   G + TSRGPGTSFEFAL +VE L G+ +A ++ 
Sbjct:   123 VTTHPLAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALVGKDMANQVK 182

Query:   261 ELLLM 265
               L++
Sbjct:   183 APLVL 187

GO:0001963 "synaptic transmission, dopaminergic" evidence=IMP

GO:0003723 "RNA binding" evidence=TAS

GO:0003729 "mRNA binding" evidence=ISO

GO:0004601 "peroxidase activity" evidence=IMP

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0006950 "response to stress" evidence=IMP

GO:0006954 "inflammatory response" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=ISO

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0007338 "single fertilization" evidence=IEA

GO:0008233 "peptidase activity" evidence=ISO

GO:0008283 "cell proliferation" evidence=TAS

GO:0008344 "adult locomotory behavior" evidence=IMP

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030424 "axon" evidence=ISO

GO:0032091 "negative regulation of protein binding" evidence=ISO

GO:0034599 "cellular response to oxidative stress" evidence=IMP

GO:0042542 "response to hydrogen peroxide" evidence=IMP;IDA

GO:0042743 "hydrogen peroxide metabolic process" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043523 "regulation of neuron apoptotic process" evidence=ISO

GO:0043524 "negative regulation of neuron apoptotic process" evidence=ISO

GO:0050727 "regulation of inflammatory response" evidence=IMP

GO:0050821 "protein stabilization" evidence=ISO;IMP

GO:0051583 "dopamine uptake involved in synaptic transmission" evidence=IMP

GO:0051899 "membrane depolarization" evidence=IMP

GO:0051920 "peroxiredoxin activity" evidence=IMP

GO:0055114 "oxidation-reduction process" evidence=IMP

GO:0060081 "membrane hyperpolarization" evidence=IMP

GO:0060548 "negative regulation of cell death" evidence=ISO;IMP

GO:0060765 "regulation of androgen receptor signaling pathway" evidence=ISO

GO:0070301 "cellular response to hydrogen peroxide" evidence=ISO;IMP

GO:2000277 "positive regulation of oxidative phosphorylation uncoupler activity" evidence=IMP

GO:2001237 "negative regulation of extrinsic apoptotic signaling pathway" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VY09	DJ1C_ARATH	No assigned EC number	0.6633	0.8538	0.8538	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	472
cd03135	163	cd03135, GATase1_DJ-1, Type 1 glutamine amidotrans	4e-64
TIGR01383	179	TIGR01383, not_thiJ, DJ-1 family protein	7e-64
cd03135	163	cd03135, GATase1_DJ-1, Type 1 glutamine amidotrans	2e-55
TIGR01383	179	TIGR01383, not_thiJ, DJ-1 family protein	1e-53
PRK11574	196	PRK11574, PRK11574, oxidative-stress-resistance ch	2e-31
PRK11574	196	PRK11574, PRK11574, oxidative-stress-resistance ch	1e-30
pfam01965	142	pfam01965, DJ-1_PfpI, DJ-1/PfpI family	1e-28
COG0693	188	COG0693, ThiJ, Putative intracellular protease/ami	3e-27
pfam01965	142	pfam01965, DJ-1_PfpI, DJ-1/PfpI family	3e-26
COG0693	188	COG0693, ThiJ, Putative intracellular protease/ami	4e-24
cd03134	165	cd03134, GATase1_PfpI_like, A type 1 glutamine ami	1e-23
cd03139	183	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotra	3e-22
TIGR01382	166	TIGR01382, PfpI, intracellular protease, PfpI fami	5e-21
pfam13278	164	pfam13278, DUF4066, Putative amidotransferase	1e-15
COG4977	328	COG4977, COG4977, Transcriptional regulator contai	2e-15
cd03134	165	cd03134, GATase1_PfpI_like, A type 1 glutamine ami	1e-13
cd03136	185	cd03136, GATase1_AraC_ArgR_like, AraC transcriptio	2e-13
cd03139	183	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotra	6e-12
cd03137	187	cd03137, GATase1_AraC_1, AraC transcriptional regu	8e-12
cd03140	170	cd03140, GATase1_PfpI_3, Type 1 glutamine amidotra	2e-10
cd01653	115	cd01653, GATase1, Type 1 glutamine amidotransferas	1e-09
TIGR01382	166	TIGR01382, PfpI, intracellular protease, PfpI fami	2e-09
cd03128	92	cd03128, GAT_1, Type 1 glutamine amidotransferase	2e-09
cd03138	195	cd03138, GATase1_AraC_2, AraC transcriptional regu	1e-08
cd03169	180	cd03169, GATase1_PfpI_1, Type 1 glutamine amidotra	5e-08
pfam13278	164	pfam13278, DUF4066, Putative amidotransferase	7e-08
cd01653	115	cd01653, GATase1, Type 1 glutamine amidotransferas	3e-07
cd03136	185	cd03136, GATase1_AraC_ArgR_like, AraC transcriptio	4e-07
cd03128	92	cd03128, GAT_1, Type 1 glutamine amidotransferase	5e-07
PRK09393	322	PRK09393, ftrA, transcriptional activator FtrA; Pr	5e-07
COG4977	328	COG4977, COG4977, Transcriptional regulator contai	1e-04
cd03132	142	cd03132, GATase1_catalase, Type 1 glutamine amidot	4e-04
cd03137	187	cd03137, GATase1_AraC_1, AraC transcriptional regu	0.004
cd03141	221	cd03141, GATase1_Hsp31_like, Type 1 glutamine amid	0.004

>gnl|CDD|153229 cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

 Score =  204 bits (521), Expect = 4e-64
 Identities = 76/163 (46%), Positives = 103/163 (63%)

Query: 290 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESV 349
           VL+ +A+G EEIE VT VD+LRRA ++V  AS+E+   + +S G+K+ ADK++SD     
Sbjct: 1   VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDD 60

Query: 350 YDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAH 409
           YD I++PGG+ GA+ L  +  L KLLKE    G++  A+C++P VL K GLLK KKAT +
Sbjct: 61  YDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAKAGLLKGKKATCY 120

Query: 410 PSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDFALAIVSKF 452
           P    KL         VVVDG +ITSRG     +FAL IV   
Sbjct: 121 PGFEDKLGGANYVDEPVVVDGNIITSRGPGTAFEFALKIVEAL 163

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly conserved cysteine located at the nucelophile elbow region typical of these domains. This cysteine been proposed to be a site of regulation of DJ-1 activity by oxidation. DJ-1 is a dimeric enzyme. Length = 163

>gnl|CDD|213612 TIGR01383, not_thiJ, DJ-1 family protein

 Score =  204 bits (520), Expect = 7e-64
 Identities = 86/177 (48%), Positives = 114/177 (64%), Gaps = 4/177 (2%)

Query: 86  KVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQ--LEVEASSGTRLVADTSISNCS 143
           KVLVP+  G EEMEAVI VDVLRRAG +VT+A       L V+ S G +++AD S+ +  
Sbjct: 1   KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIAGLNGKLAVKGSRGVKILADASLEDVD 60

Query: 144 HQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
            + FD+I LPGGMPG+  LR+ ++L  I   Q  + +L  AICAAPAV L    LL +K 
Sbjct: 61  LEKFDVIVLPGGMPGAENLRNSKLLLNILKSQESKGKLVAAICAAPAVLLAHGVLLGKK- 119

Query: 204 ITCHPAFTDKLP-TFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEI 259
            TC+P F +KL    ++V   + V G + TSRGPGT+ EFAL LVE L G+  A+E+
Sbjct: 120 ATCYPGFKEKLLNGNYSVNKTVVVDGNLITSRGPGTAIEFALELVELLAGKEKAQEV 176

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PMID:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus [Unknown function, General]. Length = 179

>gnl|CDD|153229 cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

 Score =  181 bits (463), Expect = 2e-55
 Identities = 80/164 (48%), Positives = 107/164 (65%), Gaps = 1/164 (0%)

Query: 87  VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQV 146
           VLV +  G EE+EAV  VDVLRRAG +VT AS+E +L V +S G ++ AD ++S+ +   
Sbjct: 1   VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDD 60

Query: 147 FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 206
           +D I +PGG+PG+  L D E L K+  +   + +L  AICAAPAV L   GLL+ K+ TC
Sbjct: 61  YDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAV-LAKAGLLKGKKATC 119

Query: 207 HPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQL 250
           +P F DKL     V   + V G + TSRGPGT+FEFAL +VE L
Sbjct: 120 YPGFEDKLGGANYVDEPVVVDGNIITSRGPGTAFEFALKIVEAL 163

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly conserved cysteine located at the nucelophile elbow region typical of these domains. This cysteine been proposed to be a site of regulation of DJ-1 activity by oxidation. DJ-1 is a dimeric enzyme. Length = 163

>gnl|CDD|213612 TIGR01383, not_thiJ, DJ-1 family protein

 Score =  177 bits (451), Expect = 1e-53
 Identities = 81/180 (45%), Positives = 112/180 (62%), Gaps = 5/180 (2%)

Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASV--ERSTQIVASQGVKIIADKSISDAA 346
           +VL+P+A G EE+E V  VD+LRRA + V VA         +  S+GVKI+AD S+ D  
Sbjct: 1   KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIAGLNGKLAVKGSRGVKILADASLEDVD 60

Query: 347 ESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKA 406
              +D+I+LPGG+ GAE L+ S++L  +LK Q+  G++  A+C++P VL  HG+L  KKA
Sbjct: 61  LEKFDVIVLPGGMPGAENLRNSKLLLNILKSQESKGKLVAAICAAPAVLLAHGVLLGKKA 120

Query: 407 TAHPSVIGKLTNE--VVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
           T +P    KL N    VN T VVVDG +ITSRG    I+FAL +V    G  + + VA G
Sbjct: 121 TCYPGFKEKLLNGNYSVNKT-VVVDGNLITSRGPGTAIEFALELVELLAGKEKAQEVAAG 179

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PMID:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus [Unknown function, General]. Length = 179

>gnl|CDD|183210 PRK11574, PRK11574, oxidative-stress-resistance chaperone; Provisional

 Score =  119 bits (299), Expect = 2e-31
 Identities = 67/184 (36%), Positives = 104/184 (56%), Gaps = 5/184 (2%)

Query: 288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASV--ERSTQIVASQGVKIIADKSISDA 345
              L+ +A GSEE E VT +D+L R  + V  ASV  + + +I  S+GVK++AD  + + 
Sbjct: 3   ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEV 62

Query: 346 AESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSP-IVLHKHGLLKAK 404
           A+  +D+I+LPGG+ GAE  + S +L + +++   +GRI  A+C++P  VL  H L    
Sbjct: 63  ADGDFDVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIG 122

Query: 405 KATAHPSVIGKLTNEVVNGTKVVVDGKV--ITSRGLANVIDFALAIVSKFFGHARTRSVA 462
             T  P++  K+  E     +VV D +V  +TS+G    IDFAL I+    G  +   VA
Sbjct: 123 NMTGFPTLKDKIPAEQWQDKRVVWDARVNLLTSQGPGTAIDFALKIIDLLVGREKAHEVA 182

Query: 463 EGLV 466
             LV
Sbjct: 183 SQLV 186

Length = 196

>gnl|CDD|183210 PRK11574, PRK11574, oxidative-stress-resistance chaperone; Provisional

 Score =  116 bits (293), Expect = 1e-30
 Identities = 68/189 (35%), Positives = 99/189 (52%), Gaps = 16/189 (8%)

Query: 87  VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASV--EPQLEVEASSGTRLVADTSISNCSH 144
            LV +  G+EE EAV  +D+L R G +VT ASV  +  LE+  S G +L+AD  +   + 
Sbjct: 5   ALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVAD 64

Query: 145 QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQI 204
             FD+I LPGG+ G+   RD  +L +   +     R+  AICAAPA  L+P  L     +
Sbjct: 65  GDFDVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIGNM 124

Query: 205 TCHPAFTDKLP--------TFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVA 256
           T  P   DK+P          W  + N+       TS+GPGT+ +FAL +++ L G   A
Sbjct: 125 TGFPTLKDKIPAEQWQDKRVVWDARVNL------LTSQGPGTAIDFALKIIDLLVGREKA 178

Query: 257 KEIGELLLM 265
            E+   L+M
Sbjct: 179 HEVASQLVM 187

Length = 196

>gnl|CDD|216814 pfam01965, DJ-1_PfpI, DJ-1/PfpI family

 Score =  109 bits (275), Expect = 1e-28
 Identities = 53/138 (38%), Positives = 77/138 (55%), Gaps = 4/138 (2%)

Query: 316 DVVVASVERSTQIVASQG-VKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKL 374
           +V V S E   ++    G VK+ ADK++ D     YD +++PGG AGAE L+    L K 
Sbjct: 1   EVDVVSPEDGKEVKGKNGKVKVRADKTLDDVNADDYDALVIPGGHAGAEDLRDDEKLVKF 60

Query: 375 LKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTK--VVVDG-K 431
           +KE   +G+   A+C  P+VL   GLLK ++ T+ PSV   L N         VVVDG K
Sbjct: 61  VKEFYESGKPIAAICHGPVVLAAAGLLKGRRVTSFPSVKELLKNAGAEYVDQPVVVDGNK 120

Query: 432 VITSRGLANVIDFALAIV 449
           ++TS G  +  +FAL ++
Sbjct: 121 LVTSAGPGSAEEFALELL 138

The family includes the protease PfpI. This domain is also found in transcriptional regulators. This N-terminal region of the full-length AdpA proteins is necessary for dimerisation of the molecule. Length = 142

>gnl|CDD|223765 COG0693, ThiJ, Putative intracellular protease/amidase [General function prediction only]

 Score =  107 bits (269), Expect = 3e-27
 Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 15/183 (8%)

Query: 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQ-IVASQGVKIIA-DKSISD 344
           M ++ I +A+G E++E++   D+LRRA  +V VAS E   + + + +G  ++A DK+  D
Sbjct: 2   MKKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDD 61

Query: 345 AAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG-LLKA 403
           A  + YD +++PGG  G E L+    L   +++    G+   A+C  P VL   G LLK 
Sbjct: 62  ADAADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAGLLLKG 121

Query: 404 KKATAHPSVIGKLTNEVVNG-----------TKVVVDGK-VITSRGLANVIDFALAIVSK 451
           +KATA P +   + N                 +VVVDG  ++T R  A+   FAL ++  
Sbjct: 122 RKATAFPDIEEDVKNGDGKAGANYVDAPLWTDEVVVDGNALVTGRNPASAPAFALELLKA 181

Query: 452 FFG 454
             G
Sbjct: 182 LGG 184

Length = 188

>gnl|CDD|216814 pfam01965, DJ-1_PfpI, DJ-1/PfpI family

 Score =  103 bits (258), Expect = 3e-26
 Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 5/142 (3%)

Query: 113 QVTMASVEPQLEVEASSGT-RLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKI 171
           +V + S E   EV+  +G  ++ AD ++ + +   +D + +PGG  G+  LRD E L K 
Sbjct: 1   EVDVVSPEDGKEVKGKNGKVKVRADKTLDDVNADDYDALVIPGGHAGAEDLRDDEKLVKF 60

Query: 172 TSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTD--KLPTFWAVKSNIHVSG- 228
             +  E  +   AIC  P V L   GLL+ +++T  P+  +  K      V   + V G 
Sbjct: 61  VKEFYESGKPIAAICHGPVV-LAAAGLLKGRRVTSFPSVKELLKNAGAEYVDQPVVVDGN 119

Query: 229 EVTTSRGPGTSFEFALCLVEQL 250
           ++ TS GPG++ EFAL L+E L
Sbjct: 120 KLVTSAGPGSAEEFALELLEAL 141

The family includes the protease PfpI. This domain is also found in transcriptional regulators. This N-terminal region of the full-length AdpA proteins is necessary for dimerisation of the molecule. Length = 142

>gnl|CDD|223765 COG0693, ThiJ, Putative intracellular protease/amidase [General function prediction only]

 Score = 98.8 bits (246), Expect = 4e-24
 Identities = 48/188 (25%), Positives = 76/188 (40%), Gaps = 14/188 (7%)

Query: 83  PPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLE--VEASSGTRLVADTSIS 140
             KK+ + +  G E++E ++  DVLRRAG +V +AS E + +       G  +  D +  
Sbjct: 1   MMKKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFD 60

Query: 141 NCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLR 200
           +     +D + +PGG  G   LR    L           +   AIC  PAV      LL+
Sbjct: 61  DADAADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAGLLLK 120

Query: 201 RKQITCHPAFTDKLPTF-----------WAVKSNIHVSGEVT-TSRGPGTSFEFALCLVE 248
            ++ T  P   + +                    + V G    T R P ++  FAL L++
Sbjct: 121 GRKATAFPDIEEDVKNGDGKAGANYVDAPLWTDEVVVDGNALVTGRNPASAPAFALELLK 180

Query: 249 QLFGESVA 256
            L G   A
Sbjct: 181 ALGGAEKA 188

Length = 188

>gnl|CDD|153228 cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

 Score = 96.5 bits (241), Expect = 1e-23
 Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 6/165 (3%)

Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKII-ADKSISDAAE 347
           +V I  A+G E++E+   +  LR A  +VVVA  E   +I    G   +  D +I+D   
Sbjct: 1   KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDA 60

Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKAT 407
             YD +++PGG    ++L++       ++    AG+   A+C  P VL   G+++ +K T
Sbjct: 61  DDYDALVIPGGTN-PDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLISAGVVRGRKLT 119

Query: 408 AHPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIV 449
           ++PS+   L N     V+  +VVVDG +ITSR   ++  F  AI+
Sbjct: 120 SYPSIKDDLINAGANWVD-EEVVVDGNLITSRNPDDLPAFNRAIL 163

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704. Length = 165

>gnl|CDD|153233 cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 93.4 bits (233), Expect = 3e-22
 Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 9/160 (5%)

Query: 313 AKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILK 372
           A  +V + S E    + +  G+ ++ D S +D  +   D++++PGG  G   L     L 
Sbjct: 29  APFEVFLVS-ETGGPVSSRSGLTVLPDTSFADPPD--LDVLLVPGG-GGTRALVNDPALL 84

Query: 373 KLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLT---NEVVNGTKVVVD 429
             ++ Q    +   +VC+  ++L   GLL  ++AT H + I  L      VV   + VVD
Sbjct: 85  DFIRRQAARAKYVTSVCTGALLLAAAGLLDGRRATTHWAAIDWLKEFGAIVVVDARWVVD 144

Query: 430 GKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEY 469
           G + TS G++  ID ALA+V++ FG    ++VA  L+ EY
Sbjct: 145 GNIWTSGGVSAGIDMALALVARLFGEELAQAVA--LLIEY 182

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 183

>gnl|CDD|233389 TIGR01382, PfpI, intracellular protease, PfpI family

 Score = 89.4 bits (222), Expect = 5e-21
 Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 5/163 (3%)

Query: 290 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESV 349
           +L+   +  E+ E++  +D LR A  +V   S E  T  V   G  +  D +I +     
Sbjct: 2   LLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAGT-TVGKHGYSVTVDATIDEVNPEE 60

Query: 350 YDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAH 409
           YD +++PGG A  E L+ +    +L++E    G+   A+C  P +L   G+L+ KK T++
Sbjct: 61  YDALVIPGGRA-PEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLISAGVLRGKKLTSY 119

Query: 410 PSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIV 449
           P++I  + N   E V+   VVVDG ++TSR   ++  F    +
Sbjct: 120 PAIIDDVKNAGAEYVDIEVVVVDGNLVTSRVPDDLPAFNREFL 162

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 166

>gnl|CDD|222020 pfam13278, DUF4066, Putative amidotransferase

 Score = 74.2 bits (183), Expect = 1e-15
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 14/166 (8%)

Query: 294 IANGSEEIEIVTIVDILRRAKV------DVVVASVERSTQIVASQGVKIIADKSISDAAE 347
             +G  E+++   +D+L RA         V + S   +  + +  GV I  D  ++DA E
Sbjct: 2   TFDGFNELDLAIALDVLNRANRLGGDVFRVRIVSP-DAQPVTSMNGVTITVDAPLADAPE 60

Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKAT 407
           +  D +++PGG           +L   L+    AG++ GAVCS  ++L + GLL  + AT
Sbjct: 61  A--DAVLVPGGPGTRAAAADPALLA-QLQLADPAGQLLGAVCSGALLLAEAGLLDGRPAT 117

Query: 408 AHPSVIGKLT----NEVVNGTKVVVDGKVITSRGLANVIDFALAIV 449
            H ++   L       ++     V DG + T+ G    ID AL ++
Sbjct: 118 THWTLKPWLREAGPKVLLIDRPFVADGNLATAGGCLAAIDLALWLI 163

This domain contains similarities to other amidotransferase families such as pfam00117. Some members of the family lack the likely catalytic residues. Length = 164

>gnl|CDD|227311 COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

 Score = 76.5 bits (189), Expect = 2e-15
 Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 21/156 (13%)

Query: 328 IVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGA 387
           + +S G+ I  D  +  A     D++ + GG+ G ER   +  L   L+     G   G 
Sbjct: 57  VRSSSGLSIAPDGGLEAAPP--IDILPVCGGL-GPERPVNAPALLAWLRRAARRGARLGG 113

Query: 388 VCSSPIVLHKHGLLKAKKATAH-----------PSVIGKLTNEVVNGTKVVVDGKVITSR 436
           +C+   VL + GLL  ++AT H           P V  ++T+        V+DG  IT  
Sbjct: 114 LCTGAFVLAEAGLLDGRRATTHWEHAEDFQERFPDV--RVTDR-----LFVIDGDRITCA 166

Query: 437 GLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPRS 472
           G    ID  LA++ + FG A    VA  LV +  RS
Sbjct: 167 GGTAAIDLMLALIRRDFGAALANRVARQLVVDPIRS 202

Length = 328

>gnl|CDD|153228 cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

 Score = 68.3 bits (168), Expect = 1e-13
 Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 7/156 (4%)

Query: 86  KVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLV-ADTSISNCSH 144
           KV +    G E++E    +  LR AGA+V +A  E   E++   G   V  D +I++   
Sbjct: 1   KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDA 60

Query: 145 QVFDLIALPGGM-PGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
             +D + +PGG  P   +LR            AE  +   AIC  P V L+  G++R ++
Sbjct: 61  DDYDALVIPGGTNPD--KLRRDPDAVAFVRAFAEAGKPVAAICHGPWV-LISAGVVRGRK 117

Query: 204 ITCHPAFTDKLPTFWA--VKSNIHVSGEVTTSRGPG 237
           +T +P+  D L    A  V   + V G + TSR P 
Sbjct: 118 LTSYPSIKDDLINAGANWVDEEVVVDGNLITSRNPD 153

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704. Length = 165

>gnl|CDD|153230 cd03136, GATase1_AraC_ArgR_like, AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 68.0 bits (167), Expect = 2e-13
 Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 8/145 (5%)

Query: 328 IVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGA 387
           + +S G+++  D ++ DA     D + + GG+ GA R     +L  L +  +  G   G 
Sbjct: 45  VTSSNGLRVAPDAALEDAPP--LDYLFVVGGL-GARRAVTPALLAWLRRAAR-RGVALGG 100

Query: 388 VCSSPIVLHKHGLLKAKKATAHPSVIGKLTNE----VVNGTKVVVDGKVITSRGLANVID 443
           + +   +L + GLL  ++AT H   +           V      +DG  +T  G    +D
Sbjct: 101 IDTGAFLLARAGLLDGRRATVHWEHLEAFAEAFPRVQVTRDLFEIDGDRLTCAGGTAALD 160

Query: 444 FALAIVSKFFGHARTRSVAEGLVFE 468
             L ++++  G A    VAE  + +
Sbjct: 161 LMLELIARDHGAALAARVAEQFLHD 185

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 185

>gnl|CDD|153233 cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 64.1 bits (157), Expect = 6e-12
 Identities = 48/170 (28%), Positives = 74/170 (43%), Gaps = 27/170 (15%)

Query: 105 DVLRRA-----GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS 159
           +V  RA       +V + S      V + SG  ++ DTS ++      D++ +PGG    
Sbjct: 19  EVFGRAPRLAAPFEVFLVSETGG-PVSSRSGLTVLPDTSFADPPD--LDVLLVPGGGGTR 75

Query: 160 VRLRDCEILKKITSKQAEEKRLYGAIC-------AAPAVTLLPWGLLRRKQITCHPAFTD 212
             + D  +L  I  +QA   +   ++C       AA        GLL  ++ T H A  D
Sbjct: 76  ALVNDPALLDFIR-RQAARAKYVTSVCTGALLLAAA--------GLLDGRRATTHWAAID 126

Query: 213 KLPTFWA---VKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEI 259
            L  F A   V +   V G + TS G     + AL LV +LFGE +A+ +
Sbjct: 127 WLKEFGAIVVVDARWVVDGNIWTSGGVSAGIDMALALVARLFGEELAQAV 176

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 183

>gnl|CDD|153231 cd03137, GATase1_AraC_1, AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 63.7 bits (156), Expect = 8e-12
 Identities = 46/157 (29%), Positives = 68/157 (43%), Gaps = 11/157 (7%)

Query: 316 DVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLL 375
           ++ V S E    + +S G+ ++AD  +   A    D +I+PGG     R     +L  L 
Sbjct: 34  ELRVCSPEGGP-VRSSSGLSLVADAGLDALAA--ADTVIVPGGPDVDGRPPPPALLAAL- 89

Query: 376 KEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKV------VVD 429
           +     G    +VC+   VL + GLL  ++AT H +    L        +V      V D
Sbjct: 90  RRAAARGARVASVCTGAFVLAEAGLLDGRRATTHWAYAEDLARRFPA-VRVDPDVLYVDD 148

Query: 430 GKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLV 466
           G V TS G+   ID  L +V +  G A    VA  LV
Sbjct: 149 GNVWTSAGVTAGIDLCLHLVREDLGAAVANRVARRLV 185

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 187

>gnl|CDD|153234 cd03140, GATase1_PfpI_3, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 24/151 (15%)

Query: 311 RRAKVDVVVASVERSTQIVASQ-GVKIIADKSISDAAESVYDLIILPGGVA----GAERL 365
                +V   S     + V S  G++++ D S+ D     YDL+ILPGG +     A  L
Sbjct: 23  SYEGFEVRTVSPTG--EPVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGDSWDNPEAPDL 80

Query: 366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKAT--------AHPSVIGKLT 417
               ++++ LK+ K       A+C + + L + GLL  +K T        AH    G   
Sbjct: 81  AG--LVRQALKQGKPV----AAICGATLALARAGLLNNRKHTSNSLDFLKAHAPYYGGAE 134

Query: 418 NEVVNGTKVVVDGKVITSRGLANVIDFALAI 448
                  + V DG +IT+ G A V +FA  I
Sbjct: 135 YYDEP--QAVSDGNLITANGTAPV-EFAAEI 162

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 170

>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 55.3 bits (133), Expect = 1e-09
 Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 14/106 (13%)

Query: 290 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESV 349
           V + +  G EE+E+ + +D LR A  +V V S +                   SD     
Sbjct: 1   VAVLLFPGFEELELASPLDALREAGAEVDVVSPD--------------GGPVESDVDLDD 46

Query: 350 YDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVL 395
           YD +ILPGG    + L +   L  LL+E   AG+    +C    +L
Sbjct: 47  YDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLL 92

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 115

>gnl|CDD|233389 TIGR01382, PfpI, intracellular protease, PfpI family

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 6/168 (3%)

Query: 86  KVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ 145
           K+LV      E+ E +  +D LR AG +V   S E    V    G  +  D +I   + +
Sbjct: 1   KLLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAGTTV-GKHGYSVTVDATIDEVNPE 59

Query: 146 VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQIT 205
            +D + +PGG      LR      ++  +  E+ +   AIC  P + L+  G+LR K++T
Sbjct: 60  EYDALVIPGGR-APEYLRLNNKAVRLVREFVEKGKPVAAICHGPQL-LISAGVLRGKKLT 117

Query: 206 CHPAFTDKLPTF---WAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQL 250
            +PA  D +      +     + V G + TSR P     F    ++ L
Sbjct: 118 SYPAIIDDVKNAGAEYVDIEVVVVDGNLVTSRVPDDLPAFNREFLKLL 165

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 166

>gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 14/106 (13%)

Query: 290 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESV 349
           V + +  GSEE+E+ + +D LR A  +V V S +                   SD     
Sbjct: 1   VAVLLFGGSEELELASPLDALREAGAEVDVVSPD--------------GGPVESDVDLDD 46

Query: 350 YDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVL 395
           YD +ILPGG    + L     L  LL+E   AG+    +C    +L
Sbjct: 47  YDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL 92

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain. Length = 92

>gnl|CDD|153232 cd03138, GATase1_AraC_2, AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 22/172 (12%)

Query: 310 LRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSR 369
                 +V + S      ++ + G+ I+ D +++D      DL+I+PG     + L  + 
Sbjct: 33  GGAPPFEVRLVS-LDGGPVLLAGGILILPDATLADVPA--PDLVIVPGLGGDPDELLLAD 89

Query: 370 I--LKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAH-----------PSVIGKL 416
              L   L+ Q   G    A C+   +L + GLL  ++AT H           P V    
Sbjct: 90  NPALIAWLRRQHANGATVAAACTGVFLLAEAGLLDGRRATTHWWLAPQFRRRFPKV---- 145

Query: 417 TNEVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFE 468
              +     VV DG +IT+ G     D AL ++ +  G    + VA  L+ +
Sbjct: 146 --RLDPDRVVVTDGNLITAGGAMAWADLALHLIERLAGPELAQLVARFLLID 195

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 195

>gnl|CDD|153243 cd03169, GATase1_PfpI_1, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 52.3 bits (126), Expect = 5e-08
 Identities = 38/168 (22%), Positives = 71/168 (42%), Gaps = 22/168 (13%)

Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERST-QIVA--------------SQG 333
           ++LI   +  E+ E++     L+    +V V +  +     V                 G
Sbjct: 1   KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPG 60

Query: 334 VKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPI 393
            +        +     YD +++PGG A  E L+    +  +++    A +   A+C  P 
Sbjct: 61  HRFAVTADFDEVDPDDYDALVIPGGRA-PEYLRLDEKVLAIVRHFAEANKPVAAICHGPQ 119

Query: 394 VLHKHGLLKAKKATAHPSVIGKLTNEVVNGT----KVVVDGKVITSRG 437
           +L   G+LK ++ TA+P+   K   E+  GT     VVVDG ++T++ 
Sbjct: 120 ILAAAGVLKGRRCTAYPAC--KPEVELAGGTVVDDGVVVDGNLVTAQA 165

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 180

>gnl|CDD|222020 pfam13278, DUF4066, Putative amidotransferase

 Score = 51.5 bits (124), Expect = 7e-08
 Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 17/171 (9%)

Query: 88  LVPVGFGTEEMEAVIIVDVLRRAGA------QVTMASVEPQLEVEASSGTRLVADTSISN 141
           L   GF   E++  I +DVL RA        +V + S + Q  V + +G  +  D  ++ 
Sbjct: 1   LTFDGF--NELDLAIALDVLNRANRLGGDVFRVRIVSPDAQP-VTSMNGVTITVDAPLA- 56

Query: 142 CSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRR 201
                 D + +PGG        D  +L ++        +L GA+C+   + L   GLL  
Sbjct: 57  -DAPEADAVLVPGGPGTRAAAADPALLAQL-QLADPAGQLLGAVCSGALL-LAEAGLLDG 113

Query: 202 KQITCH----PAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVE 248
           +  T H    P   +  P    +       G + T+ G   + + AL L+ 
Sbjct: 114 RPATTHWTLKPWLREAGPKVLLIDRPFVADGNLATAGGCLAAIDLALWLIA 164

This domain contains similarities to other amidotransferase families such as pfam00117. Some members of the family lack the likely catalytic residues. Length = 164

>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 29/131 (22%), Positives = 42/131 (32%), Gaps = 22/131 (16%)

Query: 87  VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQV 146
           V V +  G EE+E    +D LR AGA+V + S +                          
Sbjct: 1   VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDD-------------- 46

Query: 147 FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 206
           +D + LPGG      L   E L  +  + A   +    IC    + +L            
Sbjct: 47  YDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLLVLGVQ--------F 98

Query: 207 HPAFTDKLPTF 217
           HP   D     
Sbjct: 99  HPEAIDGAEAG 109

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 115

>gnl|CDD|153230 cd03136, GATase1_AraC_ArgR_like, AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 49.9 bits (120), Expect = 4e-07
 Identities = 31/152 (20%), Positives = 54/152 (35%), Gaps = 25/152 (16%)

Query: 125 VEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR--------LRDCEILKKITSKQA 176
           V +S+G R+  D ++ +      D + + GG+             LR            A
Sbjct: 45  VTSSNGLRVAPDAALED--APPLDYLFVVGGLGARRAVTPALLAWLRRA----------A 92

Query: 177 EEKRLYGAICAAPAVTLLPWGLLRRKQITCH----PAFTDKLPTFWAVKSNIHVSGEVTT 232
                 G I     + L   GLL  ++ T H     AF +  P     +    + G+  T
Sbjct: 93  RRGVALGGIDTGAFL-LARAGLLDGRRATVHWEHLEAFAEAFPRVQVTRDLFEIDGDRLT 151

Query: 233 SRGPGTSFEFALCLVEQLFGESVAKEIGELLL 264
             G   + +  L L+ +  G ++A  + E  L
Sbjct: 152 CAGGTAALDLMLELIARDHGAALAARVAEQFL 183

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 185

>gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 47.6 bits (113), Expect = 5e-07
 Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 14/105 (13%)

Query: 87  VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQV 146
           V V +  G+EE+E    +D LR AGA+V + S +                          
Sbjct: 1   VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDD-------------- 46

Query: 147 FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAV 191
           +D + LPGG      L   E L  +  + A   +    IC    +
Sbjct: 47  YDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQL 91

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain. Length = 92

>gnl|CDD|181818 PRK09393, ftrA, transcriptional activator FtrA; Provisional

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 10/153 (6%)

Query: 319 VASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQ 378
           VA+VE    + A+ G+ ++AD  +     +  D I++PG   G +      +L+ L    
Sbjct: 48  VAAVEPGP-LRAAGGITVVADGGLELLDRA--DTIVIPGW-RGPDAPVPEPLLEALRAAH 103

Query: 379 KVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN-----EVVNGTKVVVDGKVI 433
               R+  ++CS   VL   GLL  ++AT H     +L        V      V +G+++
Sbjct: 104 ARGARLC-SICSGVFVLAAAGLLDGRRATTHWRYAERLQARYPAIRVDPDVLYVDEGQIL 162

Query: 434 TSRGLANVIDFALAIVSKFFGHARTRSVAEGLV 466
           TS G A  ID  L +V + FG      VA  LV
Sbjct: 163 TSAGSAAGIDLCLHLVRRDFGSEAANRVARRLV 195

Length = 322

>gnl|CDD|227311 COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 31/147 (21%), Positives = 57/147 (38%), Gaps = 8/147 (5%)

Query: 124 EVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYG 183
            V +SSG  +  D  +        D++ + GG+     +    +L  +        RL G
Sbjct: 56  PVRSSSGLSIAPDGGLEAAPP--IDILPVCGGLGPERPVNAPALLAWLRRAARRGARL-G 112

Query: 184 AICAAPAVTLLPWGLLRRKQITCH----PAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTS 239
            +C   A  L   GLL  ++ T H      F ++ P          + G+  T  G   +
Sbjct: 113 GLCTG-AFVLAEAGLLDGRRATTHWEHAEDFQERFPDVRVTDRLFVIDGDRITCAGGTAA 171

Query: 240 FEFALCLVEQLFGESVAKEIGELLLMH 266
            +  L L+ + FG ++A  +   L++ 
Sbjct: 172 IDLMLALIRRDFGAALANRVARQLVVD 198

Length = 328

>gnl|CDD|153226 cd03132, GATase1_catalase, Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)

Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAES 348
           +V I +A+G +  E+  +   L+ A  +V V +      +V S G  +  D++ + A   
Sbjct: 3   KVGILVADGVDAAELSALKAALKAAGANVKVVA-PTLGGVVDSDGKTLEVDQTYAGAPSV 61

Query: 349 VYDLIILPGGVAGAERLQKS 368
           ++D +++PGG   A  L  S
Sbjct: 62  LFDAVVVPGGAEAAFALAPS 81

Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; Catalase-3 is associated with growing conditions. HP-II is produced in stationary phase. Catalase-1 is induced by ethanol and heat shock. Catalase-3 is induced under stress conditions such a hydrogen peroxide, paraquat, cadmium, heat shock, uric acid and nitrate treatment. Length = 142

>gnl|CDD|153231 cd03137, GATase1_AraC_1, AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 48/193 (24%), Positives = 76/193 (39%), Gaps = 21/193 (10%)

Query: 87  VLVPVGFGTEEMEAVIIVDVLRRAGAQ-------VTMASVEPQLEVEASSGTRLVADTSI 139
           VLV  G     ++     +V   A          + + S E    V +SSG  LVAD  +
Sbjct: 3   VLVFPGVSL--LDLSGPAEVFGEANRALGPPAYELRVCSPEGG-PVRSSSGLSLVADAGL 59

Query: 140 SNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLL 199
              +    D + +PGG     R     +L  +  + A       ++C   A  L   GLL
Sbjct: 60  D--ALAAADTVIVPGGPDVDGRPPPPALLAALR-RAAARGARVASVCTG-AFVLAEAGLL 115

Query: 200 RRKQITCHPAFTDKL----PTFWAVKSN-IHVS-GEVTTSRGPGTSFEFALCLVEQLFGE 253
             ++ T H A+ + L    P    V  + ++V  G V TS G     +  L LV +  G 
Sbjct: 116 DGRRATTHWAYAEDLARRFPAV-RVDPDVLYVDDGNVWTSAGVTAGIDLCLHLVREDLGA 174

Query: 254 SVAKEIGELLLMH 266
           +VA  +   L++ 
Sbjct: 175 AVANRVARRLVVP 187

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 187

>gnl|CDD|153235 cd03141, GATase1_Hsp31_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 35/147 (23%), Positives = 52/147 (35%), Gaps = 46/147 (31%)

Query: 340 KSISDAAESVYDLIILPGG------VAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPI 393
           K +SD   S YD I +PGG      +     LQ   +L++  +     G++  AVC  P 
Sbjct: 81  KKLSDVDPSDYDAIFIPGGHGPMFDLPDNPDLQ--DLLREFYE----NGKVVAAVCHGPA 134

Query: 394 VLH--KHG----LLKAKKATAHP------------------SVIGKLTNEVVNGT----K 425
            L   K      L+  K  T                       + +L    V        
Sbjct: 135 ALLNVKLSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLLEDELKELGANYVKAEPWAEF 194

Query: 426 VVVDGKVIT------SRGLANVIDFAL 446
           VVVDG++IT      +  +A  +  AL
Sbjct: 195 VVVDGRLITGQNPASAAAVAEALVKAL 221

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. For Ydr533c a catalytic triad forms from the conserved Cys together with a different His and Glu from that of the typical GATase1domain. Ydr533c protein and EcHsp31 are homodimers. Length = 221

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	472
KOG2764	247	consensus Putative transcriptional regulator DJ-1	100.0
TIGR01383	179	not_thiJ DJ-1 family protein. This model represent	100.0
cd03137	187	GATase1_AraC_1 AraC transcriptional regulators hav	100.0
cd03136	185	GATase1_AraC_ArgR_like AraC transcriptional regula	100.0
cd03138	195	GATase1_AraC_2 AraC transcriptional regulators hav	100.0
cd03139	183	GATase1_PfpI_2 Type 1 glutamine amidotransferase (	100.0
COG4977	328	Transcriptional regulator containing an amidase do	100.0
TIGR01383	179	not_thiJ DJ-1 family protein. This model represent	100.0
cd03135	163	GATase1_DJ-1 Type 1 glutamine amidotransferase (GA	100.0
PRK11574	196	oxidative-stress-resistance chaperone; Provisional	99.98
PRK09393	322	ftrA transcriptional activator FtrA; Provisional	99.97
cd03139	183	GATase1_PfpI_2 Type 1 glutamine amidotransferase (	99.97
cd03136	185	GATase1_AraC_ArgR_like AraC transcriptional regula	99.97
TIGR01382	166	PfpI intracellular protease, PfpI family. The memb	99.97
cd03137	187	GATase1_AraC_1 AraC transcriptional regulators hav	99.97
cd03138	195	GATase1_AraC_2 AraC transcriptional regulators hav	99.97
COG4977	328	Transcriptional regulator containing an amidase do	99.97
PRK11574	196	oxidative-stress-resistance chaperone; Provisional	99.97
cd03134	165	GATase1_PfpI_like A type 1 glutamine amidotransfer	99.97
PF13278	166	DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M	99.97
cd03135	163	GATase1_DJ-1 Type 1 glutamine amidotransferase (GA	99.97
TIGR01382	166	PfpI intracellular protease, PfpI family. The memb	99.97
cd03140	170	GATase1_PfpI_3 Type 1 glutamine amidotransferase (	99.96
cd03134	165	GATase1_PfpI_like A type 1 glutamine amidotransfer	99.96
KOG2764	247	consensus Putative transcriptional regulator DJ-1	99.96
cd03169	180	GATase1_PfpI_1 Type 1 glutamine amidotransferase (	99.96
PRK09393	322	ftrA transcriptional activator FtrA; Provisional	99.96
cd03169	180	GATase1_PfpI_1 Type 1 glutamine amidotransferase (	99.96
PF13278	166	DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M	99.96
cd03140	170	GATase1_PfpI_3 Type 1 glutamine amidotransferase (	99.95
cd03147	231	GATase1_Ydr533c_like Type 1 glutamine amidotransfe	99.93
cd03141	221	GATase1_Hsp31_like Type 1 glutamine amidotransfera	99.93
cd03147	231	GATase1_Ydr533c_like Type 1 glutamine amidotransfe	99.92
COG0693	188	ThiJ Putative intracellular protease/amidase [Gene	99.92
PRK04155	287	chaperone protein HchA; Provisional	99.92
cd03141	221	GATase1_Hsp31_like Type 1 glutamine amidotransfera	99.91
PF01965	147	DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T	99.91
COG0693	188	ThiJ Putative intracellular protease/amidase [Gene	99.91
cd03148	232	GATase1_EcHsp31_like Type 1 glutamine amidotransfe	99.91
PRK04155	287	chaperone protein HchA; Provisional	99.91
PF01965	147	DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T	99.9
cd03148	232	GATase1_EcHsp31_like Type 1 glutamine amidotransfe	99.89
PRK11780	217	isoprenoid biosynthesis protein with amidotransfer	99.88
PRK11780	217	isoprenoid biosynthesis protein with amidotransfer	99.87
cd03132	142	GATase1_catalase Type 1 glutamine amidotransferase	99.86
cd03133	213	GATase1_ES1 Type 1 glutamine amidotransferase (GAT	99.86
cd03133	213	GATase1_ES1 Type 1 glutamine amidotransferase (GAT	99.85
cd03132	142	GATase1_catalase Type 1 glutamine amidotransferase	99.84
PRK11249	752	katE hydroperoxidase II; Provisional	99.79
PRK11249	752	katE hydroperoxidase II; Provisional	99.62
PRK03619	219	phosphoribosylformylglycinamidine synthase I; Prov	99.13
cd01740	238	GATase1_FGAR_AT Type 1 glutamine amidotransferase	99.12
cd01740	238	GATase1_FGAR_AT Type 1 glutamine amidotransferase	99.07
PRK01175	261	phosphoribosylformylglycinamidine synthase I; Prov	99.03
PRK03619	219	phosphoribosylformylglycinamidine synthase I; Prov	98.95
PRK01175	261	phosphoribosylformylglycinamidine synthase I; Prov	98.91
TIGR01737	227	FGAM_synth_I phosphoribosylformylglycinamidine syn	98.87
cd01653	115	GATase1 Type 1 glutamine amidotransferase (GATase1	98.79
COG3155	217	ElbB Uncharacterized protein involved in an early	98.75
TIGR01737	227	FGAM_synth_I phosphoribosylformylglycinamidine syn	98.66
cd01653	115	GATase1 Type 1 glutamine amidotransferase (GATase1	98.62
COG0047	231	PurL Phosphoribosylformylglycinamidine (FGAM) synt	98.51
COG0047	231	PurL Phosphoribosylformylglycinamidine (FGAM) synt	98.49
PRK13527	200	glutamine amidotransferase subunit PdxT; Provision	98.46
cd03128	92	GAT_1 Type 1 glutamine amidotransferase (GATase1)-	98.42
cd03128	92	GAT_1 Type 1 glutamine amidotransferase (GATase1)-	98.36
PRK13527	200	glutamine amidotransferase subunit PdxT; Provision	98.35
PRK13526	179	glutamine amidotransferase subunit PdxT; Provision	98.35
COG3155	217	ElbB Uncharacterized protein involved in an early	98.3
TIGR03800	184	PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl	98.28
PRK13526	179	glutamine amidotransferase subunit PdxT; Provision	98.22
TIGR03800	184	PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl	98.17
PF13507	259	GATase_5: CobB/CobQ-like glutamine amidotransferas	98.11
cd03130	198	GATase1_CobB Type 1 glutamine amidotransferase (GA	98.08
PRK07053	234	glutamine amidotransferase; Provisional	98.03
PRK13143	200	hisH imidazole glycerol phosphate synthase subunit	98.01
PRK08250	235	glutamine amidotransferase; Provisional	98.0
PRK13525	189	glutamine amidotransferase subunit PdxT; Provision	97.99
PF13507	259	GATase_5: CobB/CobQ-like glutamine amidotransferas	97.97
cd03130	198	GATase1_CobB Type 1 glutamine amidotransferase (GA	97.85
PRK08250	235	glutamine amidotransferase; Provisional	97.83
PRK13525	189	glutamine amidotransferase subunit PdxT; Provision	97.82
PLN02832	248	glutamine amidotransferase subunit of pyridoxal 5'	97.78
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	97.72
cd01741	188	GATase1_1 Subgroup of proteins having the Type 1 g	97.72
cd01750	194	GATase1_CobQ Type 1 glutamine amidotransferase (GA	97.71
PRK13143	200	hisH imidazole glycerol phosphate synthase subunit	97.67
PLN02832	248	glutamine amidotransferase subunit of pyridoxal 5'	97.59
PRK07053	234	glutamine amidotransferase; Provisional	97.58
PRK06490	239	glutamine amidotransferase; Provisional	97.55
cd01749	183	GATase1_PB Glutamine Amidotransferase (GATase_I) i	97.53
PRK13141	205	hisH imidazole glycerol phosphate synthase subunit	97.53
CHL00188	210	hisH imidazole glycerol phosphate synthase subunit	97.51
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	97.49
COG0311	194	PDX2 Predicted glutamine amidotransferase involved	97.46
cd01750	194	GATase1_CobQ Type 1 glutamine amidotransferase (GA	97.46
cd01741	188	GATase1_1 Subgroup of proteins having the Type 1 g	97.45
TIGR01857	1239	FGAM-synthase phosphoribosylformylglycinamidine sy	97.44
cd01749	183	GATase1_PB Glutamine Amidotransferase (GATase_I) i	97.35
PRK13146	209	hisH imidazole glycerol phosphate synthase subunit	97.32
cd01744	178	GATase1_CPSase Small chain of the glutamine-depend	97.29
PRK06895	190	putative anthranilate synthase component II; Provi	97.29
TIGR01857	1239	FGAM-synthase phosphoribosylformylglycinamidine sy	97.27
PLN03206	1307	phosphoribosylformylglycinamidine synthase; Provis	97.23
TIGR01735	1310	FGAM_synt phosphoribosylformylglycinamidine syntha	97.2
PRK06490	239	glutamine amidotransferase; Provisional	97.14
PRK05665	240	amidotransferase; Provisional	97.14
PRK05297	1290	phosphoribosylformylglycinamidine synthase; Provis	97.12
PRK13141	205	hisH imidazole glycerol phosphate synthase subunit	97.11
CHL00188	210	hisH imidazole glycerol phosphate synthase subunit	97.1
PRK05665	240	amidotransferase; Provisional	97.06
PF07685	158	GATase_3: CobB/CobQ-like glutamine amidotransferas	97.04
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	97.02
PRK09065	237	glutamine amidotransferase; Provisional	97.02
PLN03206	1307	phosphoribosylformylglycinamidine synthase; Provis	96.94
PRK09065	237	glutamine amidotransferase; Provisional	96.9
PRK06895	190	putative anthranilate synthase component II; Provi	96.9
PRK07567	242	glutamine amidotransferase; Provisional	96.85
COG0311	194	PDX2 Predicted glutamine amidotransferase involved	96.83
PHA03366	1304	FGAM-synthase; Provisional	96.83
PRK13146	209	hisH imidazole glycerol phosphate synthase subunit	96.82
PRK13181	199	hisH imidazole glycerol phosphate synthase subunit	96.78
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	96.78
cd01748	198	GATase1_IGP_Synthase Type 1 glutamine amidotransfe	96.76
TIGR01739	1202	tegu_FGAM_synt herpesvirus tegument protein/v-FGAM	96.75
PF01174	188	SNO: SNO glutamine amidotransferase family; InterP	96.75
TIGR01735	1310	FGAM_synt phosphoribosylformylglycinamidine syntha	96.72
cd01748	198	GATase1_IGP_Synthase Type 1 glutamine amidotransfe	96.68
PRK07765	214	para-aminobenzoate synthase component II; Provisio	96.67
cd01744	178	GATase1_CPSase Small chain of the glutamine-depend	96.66
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	96.61
TIGR00888	188	guaA_Nterm GMP synthase (glutamine-hydrolyzing), N	96.57
PRK00784	488	cobyric acid synthase; Provisional	96.52
PF00117	192	GATase: Glutamine amidotransferase class-I; InterP	96.48
COG0518	198	GuaA GMP synthase - Glutamine amidotransferase dom	96.47
PRK06774	191	para-aminobenzoate synthase component II; Provisio	96.44
PRK13170	196	hisH imidazole glycerol phosphate synthase subunit	96.44
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	96.43
PF09825	367	BPL_N: Biotin-protein ligase, N terminal; InterPro	96.41
cd03144	114	GATase1_ScBLP_like Type 1 glutamine amidotransfera	96.4
PF07685	158	GATase_3: CobB/CobQ-like glutamine amidotransferas	96.38
PHA03366	1304	FGAM-synthase; Provisional	96.36
TIGR00566	188	trpG_papA glutamine amidotransferase of anthranila	96.36
PRK08007	187	para-aminobenzoate synthase component II; Provisio	96.33
TIGR01855	196	IMP_synth_hisH imidazole glycerol phosphate syntha	96.33
PRK05297	1290	phosphoribosylformylglycinamidine synthase; Provis	96.29
COG0118	204	HisH Glutamine amidotransferase [Amino acid transp	96.27
cd03146	212	GAT1_Peptidase_E Type 1 glutamine amidotransferase	96.25
cd01743	184	GATase1_Anthranilate_Synthase Type 1 glutamine ami	96.23
PRK07567	242	glutamine amidotransferase; Provisional	96.22
cd01745	189	GATase1_2 Subgroup of proteins having the Type 1 g	96.18
COG0118	204	HisH Glutamine amidotransferase [Amino acid transp	96.17
TIGR01739	1202	tegu_FGAM_synt herpesvirus tegument protein/v-FGAM	96.16
PRK12564	360	carbamoyl phosphate synthase small subunit; Review	96.15
PLN02617	538	imidazole glycerol phosphate synthase hisHF	96.14
PRK13170	196	hisH imidazole glycerol phosphate synthase subunit	96.12
PLN02335	222	anthranilate synthase	96.11
PRK05637	208	anthranilate synthase component II; Provisional	96.08
cd03144	114	GATase1_ScBLP_like Type 1 glutamine amidotransfera	96.03
PRK05670	189	anthranilate synthase component II; Provisional	95.98
cd01742	181	GATase1_GMP_Synthase Type 1 glutamine amidotransfe	95.94
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	95.94
PRK13181	199	hisH imidazole glycerol phosphate synthase subunit	95.88
PLN02617	538	imidazole glycerol phosphate synthase hisHF	95.86
PRK00784	488	cobyric acid synthase; Provisional	95.85
PRK13566	720	anthranilate synthase; Provisional	95.84
COG0518	198	GuaA GMP synthase - Glutamine amidotransferase dom	95.81
PRK08857	193	para-aminobenzoate synthase component II; Provisio	95.8
PRK07765	214	para-aminobenzoate synthase component II; Provisio	95.79
PRK05380	533	pyrG CTP synthetase; Validated	95.75
TIGR01855	196	IMP_synth_hisH imidazole glycerol phosphate syntha	95.74
PRK00758	184	GMP synthase subunit A; Validated	95.73
PRK05282	233	(alpha)-aspartyl dipeptidase; Validated	95.72
PRK07649	195	para-aminobenzoate/anthranilate synthase glutamine	95.71
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	95.71
PF09825	367	BPL_N: Biotin-protein ligase, N terminal; InterPro	95.6
PRK08007	187	para-aminobenzoate synthase component II; Provisio	95.55
PF01174	188	SNO: SNO glutamine amidotransferase family; InterP	95.53
PRK13142	192	hisH imidazole glycerol phosphate synthase subunit	95.49
TIGR00888	188	guaA_Nterm GMP synthase (glutamine-hydrolyzing), N	95.48
KOG3210	226	consensus Imidazoleglycerol-phosphate synthase sub	95.47
CHL00101	190	trpG anthranilate synthase component 2	95.46
CHL00197	382	carA carbamoyl-phosphate synthase arginine-specifi	95.35
TIGR01815	717	TrpE-clade3 anthranilate synthase, alpha proteobac	95.29
cd03146	212	GAT1_Peptidase_E Type 1 glutamine amidotransferase	95.28
PRK06774	191	para-aminobenzoate synthase component II; Provisio	95.26
PRK14004	210	hisH imidazole glycerol phosphate synthase subunit	95.25
cd01742	181	GATase1_GMP_Synthase Type 1 glutamine amidotransfe	95.2
TIGR01368	358	CPSaseIIsmall carbamoyl-phosphate synthase, small	95.2
PRK08857	193	para-aminobenzoate synthase component II; Provisio	95.05
PRK12838	354	carbamoyl phosphate synthase small subunit; Review	95.03
PRK12564	360	carbamoyl phosphate synthase small subunit; Review	94.92
TIGR00313	475	cobQ cobyric acid synthase CobQ.	94.88
PRK05670	189	anthranilate synthase component II; Provisional	94.87
TIGR00566	188	trpG_papA glutamine amidotransferase of anthranila	94.81
cd01743	184	GATase1_Anthranilate_Synthase Type 1 glutamine ami	94.73
PRK13152	201	hisH imidazole glycerol phosphate synthase subunit	94.71
KOG3210	226	consensus Imidazoleglycerol-phosphate synthase sub	94.53
PLN02327	557	CTP synthase	94.52
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	94.4
PRK07649	195	para-aminobenzoate/anthranilate synthase glutamine	94.4
TIGR01815	717	TrpE-clade3 anthranilate synthase, alpha proteobac	94.32
TIGR00337	525	PyrG CTP synthase. CTP synthase is involved in pyr	94.31
PRK05282	233	(alpha)-aspartyl dipeptidase; Validated	94.25
PRK13566	720	anthranilate synthase; Provisional	94.22
PRK13142	192	hisH imidazole glycerol phosphate synthase subunit	94.18
PRK00758	184	GMP synthase subunit A; Validated	94.16
cd01745	189	GATase1_2 Subgroup of proteins having the Type 1 g	94.07
PRK13152	201	hisH imidazole glycerol phosphate synthase subunit	94.07
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	94.03
PRK06186	229	hypothetical protein; Validated	94.02
PLN02335	222	anthranilate synthase	93.94
PRK09522	531	bifunctional glutamine amidotransferase/anthranila	93.92
cd01746	235	GATase1_CTP_Synthase Type 1 glutamine amidotransfe	93.91
CHL00101	190	trpG anthranilate synthase component 2	93.89
PF00117	192	GATase: Glutamine amidotransferase class-I; InterP	93.82
PRK05637	208	anthranilate synthase component II; Provisional	93.73
COG0512	191	PabA Anthranilate/para-aminobenzoate synthases com	93.63
PLN02347	536	GMP synthetase	93.46
PRK14004	210	hisH imidazole glycerol phosphate synthase subunit	93.38
CHL00197	382	carA carbamoyl-phosphate synthase arginine-specifi	93.2
COG0504	533	PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide	92.94
PLN02771	415	carbamoyl-phosphate synthase (glutamine-hydrolyzin	92.51
PRK11366	254	puuD gamma-glutamyl-gamma-aminobutyrate hydrolase;	92.45
TIGR01368	358	CPSaseIIsmall carbamoyl-phosphate synthase, small	92.38
cd01747	273	GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot	91.87
cd03145	217	GAT1_cyanophycinase Type 1 glutamine amidotransfer	91.87
PRK06186	229	hypothetical protein; Validated	91.82
PRK05380	533	pyrG CTP synthetase; Validated	91.79
PRK14607	534	bifunctional glutamine amidotransferase/anthranila	91.64
PRK12838	354	carbamoyl phosphate synthase small subunit; Review	91.59
PRK00074	511	guaA GMP synthase; Reviewed	90.6
cd01746	235	GATase1_CTP_Synthase Type 1 glutamine amidotransfe	90.34
PF03575	154	Peptidase_S51: Peptidase family S51; InterPro: IPR	90.29
TIGR01823	742	PabB-fungal aminodeoxychorismate synthase, fungal	89.8
TIGR00313	475	cobQ cobyric acid synthase CobQ.	89.74
PRK11366	254	puuD gamma-glutamyl-gamma-aminobutyrate hydrolase;	89.67
cd03129	210	GAT1_Peptidase_E_like Type 1 glutamine amidotransf	89.22
COG0512	191	PabA Anthranilate/para-aminobenzoate synthases com	89.09
PRK05368	302	homoserine O-succinyltransferase; Provisional	88.8
KOG3179	245	consensus Predicted glutamine synthetase [Nucleoti	88.72
PLN02347	536	GMP synthetase	88.59
PRK09522	531	bifunctional glutamine amidotransferase/anthranila	88.14
PF13587	38	DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family	88.03
TIGR02069	250	cyanophycinase cyanophycinase. This model describe	87.93
COG3340	224	PepE Peptidase E [Amino acid transport and metabol	87.58
COG3442	250	Predicted glutamine amidotransferase [General func	87.46
COG3442	250	Predicted glutamine amidotransferase [General func	87.45
PRK14607	534	bifunctional glutamine amidotransferase/anthranila	86.87
COG0505	368	CarA Carbamoylphosphate synthase small subunit [Am	86.68
COG2071	243	Predicted glutamine amidotransferases [General fun	86.61
TIGR00337	525	PyrG CTP synthase. CTP synthase is involved in pyr	86.25
PRK05368	302	homoserine O-succinyltransferase; Provisional	86.14
PRK00074	511	guaA GMP synthase; Reviewed	85.7
PLN02327	557	CTP synthase	85.6
COG4285	253	Uncharacterized conserved protein [Function unknow	85.33
COG4285	253	Uncharacterized conserved protein [Function unknow	85.31
PLN02771	415	carbamoyl-phosphate synthase (glutamine-hydrolyzin	85.0
cd03129	210	GAT1_Peptidase_E_like Type 1 glutamine amidotransf	84.86
PF13587	38	DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family	84.59
cd01747	273	GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot	82.62
PF03575	154	Peptidase_S51: Peptidase family S51; InterPro: IPR	82.62
KOG2387	585	consensus CTP synthase (UTP-ammonia lyase) [Nucleo	82.26
TIGR02069	250	cyanophycinase cyanophycinase. This model describe	82.02
PRK02645	305	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	80.76

>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]

Probab=100.00  E-value=5.3e-36  Score=270.34  Aligned_cols=241  Identities=38%  Similarity=0.560  Sum_probs=214.5

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR  163 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~  163 (472)
                      ++++.+|..+|.+++|+..+.++|++.|.+|++++++++.++.++.|..+.+|..+.+.-...||+++||||..+...|.
T Consensus         5 ~~~vlil~~~g~Ee~E~ivp~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~   84 (247)
T KOG2764|consen    5 KKAVLILCADGMEEYEFIVPIDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLS   84 (247)
T ss_pred             cccEEEEccCCcceeEEEEeHHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhhhhh
Confidence            67899999999999999999999999999999999998889999999999999988888778999999999988889999


Q ss_pred             CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC--CccccCcEEEeCCEEeCCCCCChHH
Q 012037          164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRGPGTSFE  241 (472)
Q Consensus       164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~~v~Dg~iiTa~g~~~~~d  241 (472)
                      .++.+.+.+++|++.++.|++||+|+.++|+..|++.|+++|+|+...+.+.+  ++|++.++|+|||++||+|+..+++
T Consensus        85 ~~~~v~~lvK~q~~~gkLIaaICaap~~al~a~gl~~gkk~T~~ps~k~~L~~~gy~yve~~vv~dG~liTSrGpgT~~e  164 (247)
T KOG2764|consen   85 ECEKVVDLVKEQAESGKLIAAICAAPLTALAAHGLLGGKKCTAHPSVKPKLEEGGYKYVEPRVVKDGNLITSRGPGTAFE  164 (247)
T ss_pred             hcHHHHHHHHHHHhcCCeEEEeecchHHHHhhccccccceeeeccchhhhHhhcCcEEecCCeEEeCcEEeccCCCchHH
Confidence            99999999999999999999999998778999999999999999999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHHhCchhHHhhhhccccccCCcchhhhcccccccccCCCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEE
Q 012037          242 FALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVAS  321 (472)
Q Consensus       242 lal~li~~~~g~~~a~~va~~l~~~~~~~~~~~~~~n~~~~~~~~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs  321 (472)
                      |++.|+|++.|++.++++.+.|++....                        +.|+-...|....++.+++ +-++.+-.
T Consensus       165 Fal~lvEqL~GKeka~~v~~~l~l~~~~------------------------v~~~~~~~e~~a~~~~~~~-~~~v~~~~  219 (247)
T KOG2764|consen  165 FALKLVEQLGGKEKANEVKKPLSLLFLP------------------------VAPEKKAGEACATADHDLE-GRQVPVEK  219 (247)
T ss_pred             HHHHHHHHhcCchhhhhhhccceeeccc------------------------cCCCchhcceecceehhhh-cCcceeec
Confidence            9999999999999999999887776432                        6677888888888888888 65554433


Q ss_pred             ecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCC
Q 012037          322 VERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGV  359 (472)
Q Consensus       322 ~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~  359 (472)
                      ..          .+..-...++|+..++||+|++|||.
T Consensus       220 ~g----------~~~~~~~~~dd~~~~syD~ivlPgg~  247 (247)
T KOG2764|consen  220 VG----------HNFAKTVAWDDAAVSSYDLIVLPGGR  247 (247)
T ss_pred             cc----------cceEEEEEehhhhcccccEEEecCCC
Confidence            32          22222234888888999999999983

>TIGR01383 not_thiJ DJ-1 family protein

Probab=100.00  E-value=4.1e-34  Score=262.16  Aligned_cols=175  Identities=43%  Similarity=0.695  Sum_probs=160.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHHHHhCCCeEEE--EEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc
Q 012037          289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVV--ASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ  366 (472)
Q Consensus       289 ~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~--vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~  366 (472)
                      ||+|+++|||+++|+..++++|+.+|+++++  +|++++.++++++|+++.++..+++...++||+||||||......+.
T Consensus         1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~~~~~   80 (179)
T TIGR01383         1 KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGAENLR   80 (179)
T ss_pred             CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHHHHHh
Confidence            6899999999999999999999999977765  99987548999999999999999986667899999999963345556


Q ss_pred             ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhccee-cCCcEEECCCEEEcCChhhHHHHH
Q 012037          367 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVV-NGTKVVVDGKVITSRGLANVIDFA  445 (472)
Q Consensus       367 ~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~~~~-~~~~vv~dg~iiTa~g~~~~~d~a  445 (472)
                      .++.+++||+++++++++|+++|+|+++||++|+|+||++|+||...+++++..+ .++.+++|||+|||+|+.+++||+
T Consensus        81 ~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~v~dg~i~T~~g~~a~~d~~  160 (179)
T TIGR01383        81 NSKLLLNILKKQESKGKLVAAICAAPAVLLAAGVLLGKKATCYPGFKEKLLNGNYSVNEAVVVDGNIITSRGPGTAIEFA  160 (179)
T ss_pred             hCHHHHHHHHHHHHCCCEEEEEChhHHHHHhcCCCCCCcEEECccHHHhccCCceeCCCCEEEeCCEEECCChhhHHHHH
Confidence            7899999999999999999999999999999999999999999999999988665 689999999999999999999999


Q ss_pred             HHHHHHhcCHHHHHHHHh
Q 012037          446 LAIVSKFFGHARTRSVAE  463 (472)
Q Consensus       446 l~li~~~~g~~~A~~va~  463 (472)
                      +++|++++|++.|+++++
T Consensus       161 l~li~~~~g~~~a~~va~  178 (179)
T TIGR01383       161 LALVELLCGKEKAQEVAA  178 (179)
T ss_pred             HHHHHHhcCHHHHHHhhc
Confidence            999999999999999986

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.

>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=100.00  E-value=2.5e-33  Score=258.84  Aligned_cols=174  Identities=26%  Similarity=0.389  Sum_probs=160.3

Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHhCC-------CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch
Q 012037          290 VLIPIANGSEEIEIVTIVDILRRAK-------VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA  362 (472)
Q Consensus       290 V~il~~~g~~~~e~~~~~d~l~~a~-------~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~  362 (472)
                      |+|+++|||++.|++.++|+|+.+|       |+++++|.+++ ++++++|++|.+|..+++.  .+||+|+||||.. .
T Consensus         1 i~ill~~gf~~~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~-~v~~~~g~~v~~d~~~~~~--~~~D~liipGg~~-~   76 (187)
T cd03137           1 VAVLVFPGVSLLDLSGPAEVFGEANRALGPPAYELRVCSPEGG-PVRSSSGLSLVADAGLDAL--AAADTVIVPGGPD-V   76 (187)
T ss_pred             CEEEEeCCCChhHHhHHHHHHHHHHhhcCCCCeEEEEEeCCCC-ceeecCCcEEEcCcCcccc--CCCCEEEECCCcc-c
Confidence            5899999999999999999999998       99999999997 9999999999999988855  7899999999963 4


Q ss_pred             hcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc----ce-ecCCcEEECCCEEEcCC
Q 012037          363 ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN----EV-VNGTKVVVDGKVITSRG  437 (472)
Q Consensus       363 ~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~----~~-~~~~~vv~dg~iiTa~g  437 (472)
                      .....++.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.+++    .. ..+..+++|||+|||+|
T Consensus        77 ~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~t~~~~~~~~l~~~~~~~~~~~~~~~v~dg~i~Ta~g  156 (187)
T cd03137          77 DGRPPPPALLAALRRAAARGARVASVCTGAFVLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDPDVLYVDDGNVWTSAG  156 (187)
T ss_pred             ccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHccCcCCCceeehHhhHHHHHHHCCCCEEecCCEEEecCCEEEccc
Confidence            44678999999999999999999999999999999999999999999999998876    23 34567899999999999


Q ss_pred             hhhHHHHHHHHHHHhcCHHHHHHHHhhccc
Q 012037          438 LANVIDFALAIVSKFFGHARTRSVAEGLVF  467 (472)
Q Consensus       438 ~~~~~d~al~li~~~~g~~~A~~va~~l~~  467 (472)
                      +.+++|+++++|++++|++.|+++++.|++
T Consensus       157 ~~~~~d~~l~li~~~~g~~~a~~~a~~l~~  186 (187)
T cd03137         157 VTAGIDLCLHLVREDLGAAVANRVARRLVV  186 (187)
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHHhcc
Confidence            999999999999999999999999998875

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=100.00  E-value=2.2e-33  Score=258.77  Aligned_cols=174  Identities=22%  Similarity=0.361  Sum_probs=161.8

Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHhCC-------CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch
Q 012037          290 VLIPIANGSEEIEIVTIVDILRRAK-------VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA  362 (472)
Q Consensus       290 V~il~~~g~~~~e~~~~~d~l~~a~-------~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~  362 (472)
                      |+|++||||.+.|+.+++|+|+.+|       |+|+++|.+++ ++++++|+++.+|..+++.  .+||+||||||.. .
T Consensus         1 i~il~~~g~~~~~~~~~~dv~~~a~~~~~~~~~~v~~vs~~~~-~v~~~~g~~i~~d~~~~~~--~~~D~liipgg~~-~   76 (185)
T cd03136           1 FGFLLLPGFSLLALASAIEPLRAANRLAGRELYRWRVLSLDGA-PVTSSNGLRVAPDAALEDA--PPLDYLFVVGGLG-A   76 (185)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHHHHHhcCCcceEEEEEcCCCC-eeecCCCcEEeCCcccccc--CCCCEEEEeCCCC-c
Confidence            6899999999999999999999886       89999999997 9999999999999988766  7899999999963 3


Q ss_pred             hcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc----ceecCCcEEECCCEEEcCCh
Q 012037          363 ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN----EVVNGTKVVVDGKVITSRGL  438 (472)
Q Consensus       363 ~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~----~~~~~~~vv~dg~iiTa~g~  438 (472)
                      . +..++.+++||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+++    ..+.++.+|.|||+|||+|+
T Consensus        77 ~-~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~aGll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~v~dg~i~Ta~g~  155 (185)
T cd03136          77 R-RAVTPALLAWLRRAARRGVALGGIDTGAFLLARAGLLDGRRATVHWEHLEAFAEAFPRVQVTRDLFEIDGDRLTCAGG  155 (185)
T ss_pred             c-ccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHccccCCCeeEECcccHHHHHHHCCCCccccCeEEEcCCEEEeccH
Confidence            3 678999999999999999999999999999999999999999999999998875    35578899999999999999


Q ss_pred             hhHHHHHHHHHHHhcCHHHHHHHHhhcccc
Q 012037          439 ANVIDFALAIVSKFFGHARTRSVAEGLVFE  468 (472)
Q Consensus       439 ~~~~d~al~li~~~~g~~~A~~va~~l~~~  468 (472)
                      .+++||++++|++++|++.|+++++.|+++
T Consensus       156 ~~~~d~~l~ii~~~~g~~~a~~va~~~~~~  185 (185)
T cd03136         156 TAALDLMLELIARDHGAALAARVAEQFLHD  185 (185)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHccC
Confidence            999999999999999999999999999875

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee

>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=100.00  E-value=3.1e-33  Score=259.92  Aligned_cols=176  Identities=26%  Similarity=0.414  Sum_probs=160.9

Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHhC------------CCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcC
Q 012037          290 VLIPIANGSEEIEIVTIVDILRRA------------KVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPG  357 (472)
Q Consensus       290 V~il~~~g~~~~e~~~~~d~l~~a------------~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpG  357 (472)
                      |+|++||||..++++.++|+|+.+            +|+|+++|.+++ ++++++|++|.+|..+++.  ++||+|+|||
T Consensus         1 i~ill~~gf~~~~~~~~~e~f~~an~~~~~~~~~~~~~~v~~vs~~~~-~v~s~~g~~i~~d~~~~~~--~~~D~liIpg   77 (195)
T cd03138           1 VTLLAYPGALASSLAGLLDLLRAANRLARRQQGGAPPFEVRLVSLDGG-PVLLAGGILILPDATLADV--PAPDLVIVPG   77 (195)
T ss_pred             CEEEEcCCchHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEcCCCC-eeecCCCceeccccccccc--CCCCEEEECC
Confidence            689999999999999999999975            389999999998 9999999999999988876  7899999999


Q ss_pred             CCcchh--cccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc----c-eecCCcEEECC
Q 012037          358 GVAGAE--RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN----E-VVNGTKVVVDG  430 (472)
Q Consensus       358 G~~~~~--~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~----~-~~~~~~vv~dg  430 (472)
                      |.....  .+..++.+++||+++++++++|++||+|+++|+++|+|+||++|+||...+.+++    . ...++.+++||
T Consensus        78 g~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~~v~dg  157 (195)
T cd03138          78 LGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEAGLLDGRRATTHWWLAPQFRRRFPKVRLDPDRVVVTDG  157 (195)
T ss_pred             CcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHccCcCCCeeeehHhhHHHHHHHCCCceeccCcEEEeCC
Confidence            864333  4678999999999999999999999999999999999999999999999988876    2 33458899999


Q ss_pred             CEEEcCChhhHHHHHHHHHHHhcCHHHHHHHHhhcccc
Q 012037          431 KVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFE  468 (472)
Q Consensus       431 ~iiTa~g~~~~~d~al~li~~~~g~~~A~~va~~l~~~  468 (472)
                      |+|||+|+.+++||++++|++++|.+.|+++++.|+++
T Consensus       158 ~~~T~~g~~~~~d~al~li~~~~G~~~a~~va~~l~~~  195 (195)
T cd03138         158 NLITAGGAMAWADLALHLIERLAGPELAQLVARFLLID  195 (195)
T ss_pred             CEEEcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence            99999999999999999999999999999999998764

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=100.00  E-value=3.1e-33  Score=257.20  Aligned_cols=175  Identities=28%  Similarity=0.499  Sum_probs=163.5

Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHhCC-----CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037          290 VLIPIANGSEEIEIVTIVDILRRAK-----VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER  364 (472)
Q Consensus       290 V~il~~~g~~~~e~~~~~d~l~~a~-----~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~  364 (472)
                      |+|+++|||++.|+..++|+|+.+|     |+++++|.+++ ++++++|+++.+|..+++.  .+||+|+||||. ....
T Consensus         1 i~ill~~gf~~~~~~~~~d~~~~a~~~~~~~~v~~vs~~~~-~v~~~~g~~i~~d~~~~~~--~~~D~lvipgg~-~~~~   76 (183)
T cd03139           1 VGILLFPGVEVLDVIGPYEVFGRAPRLAAPFEVFLVSETGG-PVSSRSGLTVLPDTSFADP--PDLDVLLVPGGG-GTRA   76 (183)
T ss_pred             CEEEEeCCCCEehheeHHHHHHHhhccCCCEEEEEEECCCC-ceEeCCCCEEcCCcccccC--CCCCEEEECCCc-chhh
Confidence            6899999999999999999999999     99999999998 9999999999999999876  689999999996 4555


Q ss_pred             ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhcc--ee-cCCcEEECCCEEEcCChhhH
Q 012037          365 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNE--VV-NGTKVVVDGKVITSRGLANV  441 (472)
Q Consensus       365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~~--~~-~~~~vv~dg~iiTa~g~~~~  441 (472)
                      +..++.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.+++.  .+ .++.+++|||+|||+|+.++
T Consensus        77 ~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~agll~g~~~t~~~~~~~~~~~~~~~~~~~~~~v~dg~i~T~~g~~a~  156 (183)
T cd03139          77 LVNDPALLDFIRRQAARAKYVTSVCTGALLLAAAGLLDGRRATTHWAAIDWLKEFGAIVVVDARWVVDGNIWTSGGVSAG  156 (183)
T ss_pred             hccCHHHHHHHHHhcccCCEEEEEchHHHHHHhcCCcCCCeeeecHhHHHHHHHhCCCCCCCCEEEecCCEEEcCcHHHH
Confidence            7789999999999999999999999999999999999999999999999998862  33 88999999999999999999


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHhhcccc
Q 012037          442 IDFALAIVSKFFGHARTRSVAEGLVFE  468 (472)
Q Consensus       442 ~d~al~li~~~~g~~~A~~va~~l~~~  468 (472)
                      +||++++|++++|++.|+++++.|+++
T Consensus       157 ~~~~l~ii~~~~g~~~a~~~a~~~~~~  183 (183)
T cd03139         157 IDMALALVARLFGEELAQAVALLIEYD  183 (183)
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence            999999999999999999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

Probab=100.00  E-value=7.2e-33  Score=270.38  Aligned_cols=183  Identities=27%  Similarity=0.379  Sum_probs=169.2

Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhCC-------CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCC
Q 012037          286 RMPRVLIPIANGSEEIEIVTIVDILRRAK-------VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGG  358 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~-------~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG  358 (472)
                      ...+|+++++|+|.++.+..++|.|+.||       |.|.+++.+++ +|.+++|+.|.+|..+++.  ..+|+++++||
T Consensus         9 ~~~~~~~ll~p~f~l~~fa~~ve~lr~An~~~~~~~~~w~~~s~~g~-~V~ss~G~~i~~d~~~~~~--~~~~~v~v~~g   85 (328)
T COG4977           9 SPQRFGFLLLPNFSLMAFASAVEPLRAANRLAGRSLYVWSIVSADGG-PVRSSSGLSIAPDGGLEAA--PPIDILPVCGG   85 (328)
T ss_pred             CceEEEEEEeCCCchhhhhhhHHHHHHhhhhccccccceEEeecCCC-CcccCCCceEecCCccccc--CcceEEEEecC
Confidence            45689999999999999999999999998       67999999998 9999999999999999998  56999999888


Q ss_pred             CcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc----ceecCCcEEECCCEEE
Q 012037          359 VAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN----EVVNGTKVVVDGKVIT  434 (472)
Q Consensus       359 ~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~----~~~~~~~vv~dg~iiT  434 (472)
                      . ..+...+.+++.+||++.+++|..|++||+|+|+||++||||||+||+||.+.+.|++    ....++.+++||++||
T Consensus        86 ~-~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~aGLLdGrrattHW~~~~~f~e~FP~v~~~~~lfviDg~~~T  164 (328)
T COG4977          86 L-GPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEAGLLDGRRATTHWEHAEDFQERFPDVRVTDRLFVIDGDRIT  164 (328)
T ss_pred             C-CcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHhcccCCCCeeeccccHHHHHHhCCCCCCCCceEEecCCEEE
Confidence            6 3454445589999999999999999999999999999999999999999999998887    3578899999999999


Q ss_pred             cCChhhHHHHHHHHHHHhcCHHHHHHHHhhcccccCCC
Q 012037          435 SRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPRS  472 (472)
Q Consensus       435 a~g~~~~~d~al~li~~~~g~~~A~~va~~l~~~~~r~  472 (472)
                      |+|.++++||||+||++++|.++|.+|++.++++..|+
T Consensus       165 ~aG~~a~iDl~L~lI~~~~G~~~a~~va~~lv~~~~R~  202 (328)
T COG4977         165 CAGGTAAIDLMLALIRRDFGAALANRVARQLVVDPIRS  202 (328)
T ss_pred             cCCchHHHHHHHHHHHHHhCHHHHHHHHHHhhhccccC
Confidence            99999999999999999999999999999999998774

>TIGR01383 not_thiJ DJ-1 family protein

Probab=100.00  E-value=1.6e-32  Score=251.67  Aligned_cols=175  Identities=48%  Similarity=0.740  Sum_probs=159.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHHHhCCCEEEE--EeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037           86 KVLVPVGFGTEEMEAVIIVDVLRRAGAQVTM--ASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR  163 (472)
Q Consensus        86 kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~--vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~  163 (472)
                      ||+|+++|||+..|+..++++|+.+|+++++  +|+++|.+++++.|.++.+|..+++.+..+||+|+||||......+.
T Consensus         1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~~~~~   80 (179)
T TIGR01383         1 KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGAENLR   80 (179)
T ss_pred             CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHHHHHh
Confidence            6999999999999999999999999987776  99986558999999999999999886666899999999953345556


Q ss_pred             CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCCCcc-ccCcEEEeCCEEeCCCCCChHHH
Q 012037          164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWA-VKSNIHVSGEVTTSRGPGTSFEF  242 (472)
Q Consensus       164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~~~~-~~~~~v~Dg~iiTa~g~~~~~dl  242 (472)
                      .++.+.+||+++++++++|+++|+| .++|+++|+|+||++|+||.+.+.+++..+ .++.++.|||++||+|+.+++||
T Consensus        81 ~~~~l~~~l~~~~~~~~~i~~ic~G-~~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~v~dg~i~T~~g~~a~~d~  159 (179)
T TIGR01383        81 NSKLLLNILKKQESKGKLVAAICAA-PAVLLAAGVLLGKKATCYPGFKEKLLNGNYSVNEAVVVDGNIITSRGPGTAIEF  159 (179)
T ss_pred             hCHHHHHHHHHHHHCCCEEEEEChh-HHHHHhcCCCCCCcEEECccHHHhccCCceeCCCCEEEeCCEEECCChhhHHHH
Confidence            7899999999999999999999995 779999999999999999999999988666 57889999999999999999999


Q ss_pred             HHHHHHHHhCchhHHhhhh
Q 012037          243 ALCLVEQLFGESVAKEIGE  261 (472)
Q Consensus       243 al~li~~~~g~~~a~~va~  261 (472)
                      ++++|+++.|++.|+++++
T Consensus       160 ~l~li~~~~g~~~a~~va~  178 (179)
T TIGR01383       160 ALALVELLCGKEKAQEVAA  178 (179)
T ss_pred             HHHHHHHhcCHHHHHHhhc
Confidence            9999999999999999975

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.

>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

Probab=100.00  E-value=5.3e-32  Score=244.16  Aligned_cols=162  Identities=48%  Similarity=0.714  Sum_probs=150.3

Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCccee-cCCCcEEeecCCccccCCCcccEEEEcCCCcchhccccc
Q 012037          290 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIV-ASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKS  368 (472)
Q Consensus       290 V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~-s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~  368 (472)
                      |+|+++|||++.|+..++++|+.+||+++++|++++ ++. ++.|+.+.++..+++.+..+||+||||||......+..+
T Consensus         1 v~il~~~gf~~~e~~~~~~~~~~a~~~v~~vs~~~~-~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~   79 (163)
T cd03135           1 VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKK-LAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADN   79 (163)
T ss_pred             CEEEecCCcchHHHHHHHHHHHHCCCEEEEEEcCCC-ceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhC
Confidence            689999999999999999999999999999999998 765 689999999999998877799999999997335556679


Q ss_pred             HHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhcceecCCcEEECCCEEEcCChhhHHHHHHHH
Q 012037          369 RILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDFALAI  448 (472)
Q Consensus       369 ~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~~~~~~~~vv~dg~iiTa~g~~~~~d~al~l  448 (472)
                      +++++||+++++++++|+++|+|+++||++|+|+||++|+||...+++.+..+.++.+|+|||+|||+|+.+++||++++
T Consensus        80 ~~l~~~l~~~~~~~~~i~~ic~g~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~l~T~~g~~s~~d~al~l  159 (163)
T cd03135          80 EKLIKLLKEFNAKGKLIAAICAAPAVLAKAGLLKGKKATCYPGFEDKLGGANYVDEPVVVDGNIITSRGPGTAFEFALKI  159 (163)
T ss_pred             HHHHHHHHHHHHcCCEEEEEchhHHHHHHcCCcCCCeEEECchHHHhcCCCeEecCCEEEECCEEEcCCcccHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999987777788999999999999999999999999


Q ss_pred             HHHh
Q 012037          449 VSKF  452 (472)
Q Consensus       449 i~~~  452 (472)
                      |+++
T Consensus       160 i~~l  163 (163)
T cd03135         160 VEAL  163 (163)
T ss_pred             HHhC
Confidence            9975

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly

>PRK11574 oxidative-stress-resistance chaperone; Provisional

Probab=99.98  E-value=2.1e-31  Score=247.88  Aligned_cols=184  Identities=35%  Similarity=0.588  Sum_probs=165.8

Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecC--CcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh
Q 012037          286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVER--STQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE  363 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~--~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~  363 (472)
                      ++|||+|+++|||+++|+..++++|++++++++++|.++  +.++++++|+++.+|..+++.+.++||+|+||||.....
T Consensus         1 ~~~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~   80 (196)
T PRK11574          1 MSASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAE   80 (196)
T ss_pred             CCceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhh
Confidence            358999999999999999999999999999999999864  236999999999999999987666899999999964445


Q ss_pred             cccccHHHHHHHHHHHHcCCeEEEEchhHHH-HHHcCCCCCceeccChhhHhhhhcceecCCcEEECC--CEEEcCChhh
Q 012037          364 RLQKSRILKKLLKEQKVAGRIYGAVCSSPIV-LHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDG--KVITSRGLAN  440 (472)
Q Consensus       364 ~~~~~~~l~~~L~~~~~~g~~v~aic~G~~l-LA~aGlL~g~~~T~~~~~~~~l~~~~~~~~~vv~dg--~iiTa~g~~~  440 (472)
                      .+..++.+++||++++++|++|++||+|+++ |+.+|+|+|+++|.+..+.+.+.+..+.++.+++|+  |+|||+|+++
T Consensus        81 ~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~~gll~~~~~t~~~~~~~~~p~~~~~~~~~v~d~~~~iiT~~G~~a  160 (196)
T PRK11574         81 CFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDKIPAEQWQDKRVVWDARVNLLTSQGPGT  160 (196)
T ss_pred             hhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHhCCccCCCeEeeCcChHHhcccCcccCCCEEEeCCccEEeCCCcch
Confidence            5677889999999999999999999999985 777999999999999888888888777777888886  9999999999


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHhhccccc
Q 012037          441 VIDFALAIVSKFFGHARTRSVAEGLVFEY  469 (472)
Q Consensus       441 ~~d~al~li~~~~g~~~A~~va~~l~~~~  469 (472)
                      ++||++++|++++|++.|+++++.|+++.
T Consensus       161 ~~dlal~li~~~~G~~~a~~va~~~~~~~  189 (196)
T PRK11574        161 AIDFALKIIDLLVGREKAHEVASQLVMAA  189 (196)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHhhhccCc
Confidence            99999999999999999999999998865

>PRK09393 ftrA transcriptional activator FtrA; Provisional

Probab=99.97  E-value=4.4e-31  Score=264.40  Aligned_cols=181  Identities=28%  Similarity=0.363  Sum_probs=163.7

Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhCC-------CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCC
Q 012037          286 RMPRVLIPIANGSEEIEIVTIVDILRRAK-------VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGG  358 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~-------~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG  358 (472)
                      ++++|+|++||||+++|+++++|+|+.++       |+|+++|.+++ +|++++|+.|.+|..+++.  ++||+||||||
T Consensus         8 ~~~~v~ill~~gf~~~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~~-~v~ss~g~~i~~d~~~~~~--~~~D~livpGg   84 (322)
T PRK09393          8 HNHLVVALAYDGLCTFEFGCAVEIFGLPRPELGVDWYRFAVAAVEPG-PLRAAGGITVVADGGLELL--DRADTIVIPGW   84 (322)
T ss_pred             cccEEEEEEcCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEECCCC-ceEeCCCcEEeCCCCcccc--CCCCEEEECCC
Confidence            45799999999999999999999997765       79999999997 9999999999999999876  78999999998


Q ss_pred             CcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc----c-eecCCcEEECCCEE
Q 012037          359 VAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN----E-VVNGTKVVVDGKVI  433 (472)
Q Consensus       359 ~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~----~-~~~~~~vv~dg~ii  433 (472)
                      . +... ..++.+++||+++++++++|++||+|+++||++|||+|+++|+||...+.|++    . +..+..+|+|||+|
T Consensus        85 ~-~~~~-~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~Tth~~~~~~~~~~~p~~~~~~~~~~v~~g~ii  162 (322)
T PRK09393         85 R-GPDA-PVPEPLLEALRAAHARGARLCSICSGVFVLAAAGLLDGRRATTHWRYAERLQARYPAIRVDPDVLYVDEGQIL  162 (322)
T ss_pred             C-cccc-cCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhccCCCCCeeeecHhhHHHHHHHCCCCEEeCCceEEecCCEE
Confidence            6 3333 46899999999999999999999999999999999999999999999999875    2 33445789999999


Q ss_pred             EcCChhhHHHHHHHHHHHhcCHHHHHHHHhhcccccCC
Q 012037          434 TSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPR  471 (472)
Q Consensus       434 Ta~g~~~~~d~al~li~~~~g~~~A~~va~~l~~~~~r  471 (472)
                      ||+|+.+++|+++++|++++|.+.++++++.|+++..|
T Consensus       163 T~~G~~a~~d~~l~li~~~~g~~~a~~va~~ll~~~~~  200 (322)
T PRK09393        163 TSAGSAAGIDLCLHLVRRDFGSEAANRVARRLVVPPHR  200 (322)
T ss_pred             ecccHHHHHHHHHHHHHHHhCHHHHHHHHHHhCcCcCC
Confidence            99999999999999999999999999999999987554

>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.97  E-value=6.4e-32  Score=248.42  Aligned_cols=175  Identities=29%  Similarity=0.373  Sum_probs=161.4

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHhCC-----CEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037           87 VLVPVGFGTEEMEAVIIVDVLRRAG-----AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR  161 (472)
Q Consensus        87 V~ill~~g~~~~e~~~~~~~l~~ag-----~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~  161 (472)
                      |+||++|||+..|+..++|+|+.++     |++++++++++ +|++++|.++.+|.++++.+  +||+|+||||. ....
T Consensus         1 i~ill~~gf~~~~~~~~~d~~~~a~~~~~~~~v~~vs~~~~-~v~~~~g~~i~~d~~~~~~~--~~D~lvipgg~-~~~~   76 (183)
T cd03139           1 VGILLFPGVEVLDVIGPYEVFGRAPRLAAPFEVFLVSETGG-PVSSRSGLTVLPDTSFADPP--DLDVLLVPGGG-GTRA   76 (183)
T ss_pred             CEEEEeCCCCEehheeHHHHHHHhhccCCCEEEEEEECCCC-ceEeCCCCEEcCCcccccCC--CCCEEEECCCc-chhh
Confidence            6899999999999999999999998     99999999987 99999999999999998755  79999999994 4555


Q ss_pred             ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC-C-cc-ccCcEEEeCCEEeCCCCCC
Q 012037          162 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-F-WA-VKSNIHVSGEVTTSRGPGT  238 (472)
Q Consensus       162 l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~-~-~~-~~~~~v~Dg~iiTa~g~~~  238 (472)
                      +..++.+++||+++++++|+|+++|+| .++|+++|+|+||++|+||...+.+++ + .+ .++.++.|||++||+|+.+
T Consensus        77 ~~~~~~~~~~l~~~~~~~k~i~aic~g-~~~La~agll~g~~~t~~~~~~~~~~~~~~~~~~~~~~v~dg~i~T~~g~~a  155 (183)
T cd03139          77 LVNDPALLDFIRRQAARAKYVTSVCTG-ALLLAAAGLLDGRRATTHWAAIDWLKEFGAIVVVDARWVVDGNIWTSGGVSA  155 (183)
T ss_pred             hccCHHHHHHHHHhcccCCEEEEEchH-HHHHHhcCCcCCCeeeecHhHHHHHHHhCCCCCCCCEEEecCCEEEcCcHHH
Confidence            778999999999999999999999996 678999999999999999999999987 3 33 7888999999999999999


Q ss_pred             hHHHHHHHHHHHhCchhHHhhhhccccc
Q 012037          239 SFEFALCLVEQLFGESVAKEIGELLLMH  266 (472)
Q Consensus       239 ~~dlal~li~~~~g~~~a~~va~~l~~~  266 (472)
                      ++||++++|++++|++.|+++++.|+++
T Consensus       156 ~~~~~l~ii~~~~g~~~a~~~a~~~~~~  183 (183)
T cd03139         156 GIDMALALVARLFGEELAQAVALLIEYD  183 (183)
T ss_pred             HHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence            9999999999999999999999988753

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=99.97  E-value=2e-31  Score=245.73  Aligned_cols=174  Identities=20%  Similarity=0.266  Sum_probs=159.0

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHhCC-------CEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc
Q 012037           87 VLVPVGFGTEEMEAVIIVDVLRRAG-------AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS  159 (472)
Q Consensus        87 V~ill~~g~~~~e~~~~~~~l~~ag-------~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~  159 (472)
                      |+|+++|||+..++..++|+|+.++       |+|++++.+++ +++++.|.++.+|..+.+.+  +||+|+||||. ..
T Consensus         1 i~il~~~g~~~~~~~~~~dv~~~a~~~~~~~~~~v~~vs~~~~-~v~~~~g~~i~~d~~~~~~~--~~D~liipgg~-~~   76 (185)
T cd03136           1 FGFLLLPGFSLLALASAIEPLRAANRLAGRELYRWRVLSLDGA-PVTSSNGLRVAPDAALEDAP--PLDYLFVVGGL-GA   76 (185)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHHHHHhcCCcceEEEEEcCCCC-eeecCCCcEEeCCccccccC--CCCEEEEeCCC-Cc
Confidence            6899999999999999999999874       89999999976 99999999999999987654  89999999995 33


Q ss_pred             ccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC----CccccCcEEEeCCEEeCCC
Q 012037          160 VRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT----FWAVKSNIHVSGEVTTSRG  235 (472)
Q Consensus       160 ~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~----~~~~~~~~v~Dg~iiTa~g  235 (472)
                      . +..++.+++||++++++++.|+++|+| .++|+++|+|+||++|+||...+.+++    .++.++.++.|||++|++|
T Consensus        77 ~-~~~~~~~~~~l~~~~~~~~~i~aic~g-~~~La~aGll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~v~dg~i~Ta~g  154 (185)
T cd03136          77 R-RAVTPALLAWLRRAARRGVALGGIDTG-AFLLARAGLLDGRRATVHWEHLEAFAEAFPRVQVTRDLFEIDGDRLTCAG  154 (185)
T ss_pred             c-ccCCHHHHHHHHHHHhcCCEEEEEcHH-HHHHHHccccCCCeeEECcccHHHHHHHCCCCccccCeEEEcCCEEEecc
Confidence            3 678999999999999999999999996 679999999999999999999998876    4567788999999999999


Q ss_pred             CCChHHHHHHHHHHHhCchhHHhhhhccccc
Q 012037          236 PGTSFEFALCLVEQLFGESVAKEIGELLLMH  266 (472)
Q Consensus       236 ~~~~~dlal~li~~~~g~~~a~~va~~l~~~  266 (472)
                      +.+++||++++|++++|+++|+++++.|+++
T Consensus       155 ~~~~~d~~l~ii~~~~g~~~a~~va~~~~~~  185 (185)
T cd03136         155 GTAALDLMLELIARDHGAALAARVAEQFLHD  185 (185)
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHHHccC
Confidence            9999999999999999999999999988764

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee

>TIGR01382 PfpI intracellular protease, PfpI family

Probab=99.97  E-value=1.1e-30  Score=236.55  Aligned_cols=162  Identities=28%  Similarity=0.451  Sum_probs=149.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccccc
Q 012037          289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKS  368 (472)
Q Consensus       289 ~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~  368 (472)
                      ||+|+++|||++.|+..++++|+++||+++++|.+++ +++++.|+++.++..+++.+..+||+|+||||.. ...+..+
T Consensus         1 ~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~-~~~~~~~   78 (166)
T TIGR01382         1 KLLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAG-TTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRA-PEYLRLN   78 (166)
T ss_pred             CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEecCCC-ceeccCCceeeccCChhhCCHHHCcEEEECCCCC-HHHhccC
Confidence            6899999999999999999999999999999999987 9999999999999999988666899999999963 5556678


Q ss_pred             HHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc--ceecC-CcEEECCCEEEcCChhhHHHHH
Q 012037          369 RILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNG-TKVVVDGKVITSRGLANVIDFA  445 (472)
Q Consensus       369 ~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~-~~vv~dg~iiTa~g~~~~~d~a  445 (472)
                      +.+.+||+++++++++|+++|+|+++||++|||+||++|+||...+.+++  ..+.+ +.+|+|||+|||+|+.++.+|+
T Consensus        79 ~~l~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~fa  158 (166)
T TIGR01382        79 NKAVRLVREFVEKGKPVAAICHGPQLLISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIEVVVVDGNLVTSRVPDDLPAFN  158 (166)
T ss_pred             HHHHHHHHHHHHcCCEEEEEChHHHHHHhcCccCCCEEEcCccHHHHHHHCCCeEEcCCCEEEECCEEEeCCcccHHHHH
Confidence            89999999999999999999999999999999999999999999999886  35555 7999999999999999999999


Q ss_pred             HHHHHHh
Q 012037          446 LAIVSKF  452 (472)
Q Consensus       446 l~li~~~  452 (472)
                      .++++++
T Consensus       159 ~~~~~~l  165 (166)
T TIGR01382       159 REFLKLL  165 (166)
T ss_pred             HHHHHHh
Confidence            9999985

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.

>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=99.97  E-value=4.3e-31  Score=243.84  Aligned_cols=174  Identities=25%  Similarity=0.291  Sum_probs=157.9

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHhCC-------CEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc
Q 012037           87 VLVPVGFGTEEMEAVIIVDVLRRAG-------AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS  159 (472)
Q Consensus        87 V~ill~~g~~~~e~~~~~~~l~~ag-------~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~  159 (472)
                      |+|+++|||+..|+..++|+|+.++       |++++++++++ ++++++|+++.+|..+++.+  +||+|+||||. ..
T Consensus         1 i~ill~~gf~~~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~-~v~~~~g~~v~~d~~~~~~~--~~D~liipGg~-~~   76 (187)
T cd03137           1 VAVLVFPGVSLLDLSGPAEVFGEANRALGPPAYELRVCSPEGG-PVRSSSGLSLVADAGLDALA--AADTVIVPGGP-DV   76 (187)
T ss_pred             CEEEEeCCCChhHHhHHHHHHHHHHhhcCCCCeEEEEEeCCCC-ceeecCCcEEEcCcCccccC--CCCEEEECCCc-cc
Confidence            6899999999999999999999987       99999999976 99999999999999988554  89999999994 44


Q ss_pred             ccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC----Ccccc-CcEEEeCCEEeCC
Q 012037          160 VRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT----FWAVK-SNIHVSGEVTTSR  234 (472)
Q Consensus       160 ~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~----~~~~~-~~~v~Dg~iiTa~  234 (472)
                      .....++.+++||+++++++++|+++|+| .++|+++|+|+||++|+||...+.+++    ..+.+ ..++.|||++||+
T Consensus        77 ~~~~~~~~l~~~l~~~~~~~~~i~aic~g-~~~La~aGlL~~~~~t~~~~~~~~l~~~~~~~~~~~~~~~v~dg~i~Ta~  155 (187)
T cd03137          77 DGRPPPPALLAALRRAAARGARVASVCTG-AFVLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDPDVLYVDDGNVWTSA  155 (187)
T ss_pred             ccccCCHHHHHHHHHHHhcCCEEEEECHH-HHHHHHccCcCCCceeehHhhHHHHHHHCCCCEEecCCEEEecCCEEEcc
Confidence            44678999999999999999999999996 679999999999999999999998877    34444 4588999999999


Q ss_pred             CCCChHHHHHHHHHHHhCchhHHhhhhcccc
Q 012037          235 GPGTSFEFALCLVEQLFGESVAKEIGELLLM  265 (472)
Q Consensus       235 g~~~~~dlal~li~~~~g~~~a~~va~~l~~  265 (472)
                      |+.+++|+++++|++++|++.|+++++.|++
T Consensus       156 g~~~~~d~~l~li~~~~g~~~a~~~a~~l~~  186 (187)
T cd03137         156 GVTAGIDLCLHLVREDLGAAVANRVARRLVV  186 (187)
T ss_pred             cHHHHHHHHHHHHHHHhCHHHHHHHHHHhcc
Confidence            9999999999999999999999999998875

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=99.97  E-value=6.8e-31  Score=244.20  Aligned_cols=176  Identities=23%  Similarity=0.285  Sum_probs=158.3

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHhC------------CCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcC
Q 012037           87 VLVPVGFGTEEMEAVIIVDVLRRA------------GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPG  154 (472)
Q Consensus        87 V~ill~~g~~~~e~~~~~~~l~~a------------g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpG  154 (472)
                      |+|+++|||...++..++|+|+.+            +|+|++++.+++ ++++++|.++.+|.++++.+  +||+|+|||
T Consensus         1 i~ill~~gf~~~~~~~~~e~f~~an~~~~~~~~~~~~~~v~~vs~~~~-~v~s~~g~~i~~d~~~~~~~--~~D~liIpg   77 (195)
T cd03138           1 VTLLAYPGALASSLAGLLDLLRAANRLARRQQGGAPPFEVRLVSLDGG-PVLLAGGILILPDATLADVP--APDLVIVPG   77 (195)
T ss_pred             CEEEEcCCchHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEcCCCC-eeecCCCceecccccccccC--CCCEEEECC
Confidence            689999999999999999999963            599999999986 99999999999999888765  899999999


Q ss_pred             Cccccc--cccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC-C---cccc-CcEEEe
Q 012037          155 GMPGSV--RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-F---WAVK-SNIHVS  227 (472)
Q Consensus       155 G~~~~~--~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~-~---~~~~-~~~v~D  227 (472)
                      |.....  .+..++.+++||+++++++++|+++|+| .++|+++|+|+||++|+||...+.|++ +   .+.+ +.++.|
T Consensus        78 g~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G-~~~La~agll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~~v~d  156 (195)
T cd03138          78 LGGDPDELLLADNPALIAWLRRQHANGATVAAACTG-VFLLAEAGLLDGRRATTHWWLAPQFRRRFPKVRLDPDRVVVTD  156 (195)
T ss_pred             CcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHH-HHHHHHccCcCCCeeeehHhhHHHHHHHCCCceeccCcEEEeC
Confidence            854433  4678999999999999999999999996 679999999999999999999988877 3   3444 679999


Q ss_pred             CCEEeCCCCCChHHHHHHHHHHHhCchhHHhhhhccccc
Q 012037          228 GEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMH  266 (472)
Q Consensus       228 g~iiTa~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~  266 (472)
                      ||++|++|+.+++|+++++|++++|.++|+++++.|.++
T Consensus       157 g~~~T~~g~~~~~d~al~li~~~~G~~~a~~va~~l~~~  195 (195)
T cd03138         157 GNLITAGGAMAWADLALHLIERLAGPELAQLVARFLLID  195 (195)
T ss_pred             CCEEEcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence            999999999999999999999999999999999988764

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

Probab=99.97  E-value=1.5e-30  Score=254.10  Aligned_cols=213  Identities=19%  Similarity=0.297  Sum_probs=179.7

Q ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHhCC-------CEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcC
Q 012037           82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAG-------AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPG  154 (472)
Q Consensus        82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag-------~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpG  154 (472)
                      ....+|+|+++++|..+.+..++|.|+.++       |.|.+++.+++ +|.+++|+.+.+|..+++..  .+|.+++.+
T Consensus         8 ~~~~~~~~ll~p~f~l~~fa~~ve~lr~An~~~~~~~~~w~~~s~~g~-~V~ss~G~~i~~d~~~~~~~--~~~~v~v~~   84 (328)
T COG4977           8 PSPQRFGFLLLPNFSLMAFASAVEPLRAANRLAGRSLYVWSIVSADGG-PVRSSSGLSIAPDGGLEAAP--PIDILPVCG   84 (328)
T ss_pred             CCceEEEEEEeCCCchhhhhhhHHHHHHhhhhccccccceEEeecCCC-CcccCCCceEecCCcccccC--cceEEEEec
Confidence            446789999999999999999999999873       67999999987 99999999999999999887  599999988


Q ss_pred             CccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC-Cc---cccCcEEEeCCE
Q 012037          155 GMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-FW---AVKSNIHVSGEV  230 (472)
Q Consensus       155 G~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~-~~---~~~~~~v~Dg~i  230 (472)
                      |. ........+++.+||++.+++|..|+++|+ |+|+||++||||||+||+||.+.+.|++ |+   ..++.+++||++
T Consensus        85 g~-~~~~~~~~~~l~~~Lr~~~~~G~~l~gict-Gaf~LA~aGLLdGrrattHW~~~~~f~e~FP~v~~~~~lfviDg~~  162 (328)
T COG4977          85 GL-GPERPVNAPALLAWLRRAARRGARLGGLCT-GAFVLAEAGLLDGRRATTHWEHAEDFQERFPDVRVTDRLFVIDGDR  162 (328)
T ss_pred             CC-CcccccchHHHHHHHHHHHhcCCeEEEehH-hHHHHHHhcccCCCCeeeccccHHHHHHhCCCCCCCCceEEecCCE
Confidence            83 444444448899999999999999999999 5899999999999999999999999988 54   345679999999


Q ss_pred             EeCCCCCChHHHHHHHHHHHhCchhHHhhhhccccccCCcchhhhcccccccccCCCCEEEEEeCCCCCHHHHHHHHHHH
Q 012037          231 TTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDIL  310 (472)
Q Consensus       231 iTa~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~~~~~~~~~~~~n~~~~~~~~~~~V~il~~~g~~~~e~~~~~d~l  310 (472)
                      +||+|+.+++|++++||++.+|.++|.+|+++|++++.++....             .++......+...-.+..+++.+
T Consensus       163 ~T~aG~~a~iDl~L~lI~~~~G~~~a~~va~~lv~~~~R~~~~~-------------Q~~~~~~~~~~~~~~l~~~i~~m  229 (328)
T COG4977         163 ITCAGGTAAIDLMLALIRRDFGAALANRVARQLVVDPIRSGGDR-------------QRLPLLGRLGHRDPRLLRAIELM  229 (328)
T ss_pred             EEcCCchHHHHHHHHHHHHHhCHHHHHHHHHHhhhccccCCCcc-------------ccccccccCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999887653321             12333333444555666666666


Q ss_pred             Hh
Q 012037          311 RR  312 (472)
Q Consensus       311 ~~  312 (472)
                      +.
T Consensus       230 e~  231 (328)
T COG4977         230 EA  231 (328)
T ss_pred             HH
Confidence            54

>PRK11574 oxidative-stress-resistance chaperone; Provisional

Probab=99.97  E-value=3.5e-30  Score=239.58  Aligned_cols=185  Identities=36%  Similarity=0.576  Sum_probs=166.5

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCC--CcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEP--QLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR  161 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~--g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~  161 (472)
                      +|||+|++++||++.|+..++++|+++|+++++++.+.  +.+++++.|..+.+|.++++.+..+||+|+||||......
T Consensus         2 ~~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~~   81 (196)
T PRK11574          2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAEC   81 (196)
T ss_pred             CceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhhh
Confidence            57999999999999999999999999999999999863  2379999999999999998876668999999999544555


Q ss_pred             ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCCCccccCcEEEeC--CEEeCCCCCCh
Q 012037          162 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSG--EVTTSRGPGTS  239 (472)
Q Consensus       162 l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~v~Dg--~iiTa~g~~~~  239 (472)
                      +.+++.+.+||+++++++++|++||+|+.++|+.+|+|+|+++|.++.+.+.+.+..+.+++++.|+  |++||+|+.++
T Consensus        82 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~~gll~~~~~t~~~~~~~~~p~~~~~~~~~v~d~~~~iiT~~G~~a~  161 (196)
T PRK11574         82 FRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDKIPAEQWQDKRVVWDARVNLLTSQGPGTA  161 (196)
T ss_pred             hhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHhCCccCCCeEeeCcChHHhcccCcccCCCEEEeCCccEEeCCCcchH
Confidence            6778899999999999999999999976556778999999999999999888888788888888886  99999999999


Q ss_pred             HHHHHHHHHHHhCchhHHhhhhccccccC
Q 012037          240 FEFALCLVEQLFGESVAKEIGELLLMHNA  268 (472)
Q Consensus       240 ~dlal~li~~~~g~~~a~~va~~l~~~~~  268 (472)
                      +||++++|++++|.+.|+++++.|+++..
T Consensus       162 ~dlal~li~~~~G~~~a~~va~~~~~~~~  190 (196)
T PRK11574        162 IDFALKIIDLLVGREKAHEVASQLVMAAG  190 (196)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHhhhccCcc
Confidence            99999999999999999999999987753

>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

Probab=99.97  E-value=1.7e-30  Score=235.00  Aligned_cols=160  Identities=32%  Similarity=0.504  Sum_probs=148.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEec-CCcceecCCCc-EEeecCCccccCCCcccEEEEcCCCcchhccc
Q 012037          289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVE-RSTQIVASQGV-KIIADKSISDAAESVYDLIILPGGVAGAERLQ  366 (472)
Q Consensus       289 ~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~-~~~~v~s~~G~-~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~  366 (472)
                      ||+|+++|||++.|+..+++.|++++|+++++|++ ++ +++++.|. .+.+|..+++....+||+|+||||. ....+.
T Consensus         1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~v~~vs~~~~~-~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~-~~~~~~   78 (165)
T cd03134           1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGG-EIQGKHGYDTVTVDLTIADVDADDYDALVIPGGT-NPDKLR   78 (165)
T ss_pred             CEEEEcCCCchHHHHHHHHHHHHHCCCEEEEEccCCCc-ccccCcCceeecCCCChHHCCHHHCCEEEECCCC-Chhhhc
Confidence            68999999999999999999999999999999999 76 99999999 9999999998765689999999997 455566


Q ss_pred             ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc--ceecCCcEEECCCEEEcCChhhHHHH
Q 012037          367 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLANVIDF  444 (472)
Q Consensus       367 ~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~vv~dg~iiTa~g~~~~~d~  444 (472)
                      .++.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.+++  ..+.++.+++|||+|||+|+.++++|
T Consensus        79 ~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g~~~T~h~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~f  158 (165)
T cd03134          79 RDPDAVAFVRAFAEAGKPVAAICHGPWVLISAGVVRGRKLTSYPSIKDDLINAGANWVDEEVVVDGNLITSRNPDDLPAF  158 (165)
T ss_pred             cCHHHHHHHHHHHHcCCeEEEEchHHHHHHhcCccCCCEeeCCHhHHHHHHHcCCeEecCCEEEECCEEEecCcchHHHH
Confidence            7899999999999999999999999999999999999999999999999886  56678889999999999999999999


Q ss_pred             HHHHHH
Q 012037          445 ALAIVS  450 (472)
Q Consensus       445 al~li~  450 (472)
                      ++.+|+
T Consensus       159 ~~~~~~  164 (165)
T cd03134         159 NRAILK  164 (165)
T ss_pred             HHHHHh
Confidence            999986

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.

>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C

Probab=99.97  E-value=1.8e-30  Score=235.08  Aligned_cols=154  Identities=31%  Similarity=0.519  Sum_probs=136.9

Q ss_pred             EeCCCCCHHHHHHHHHHHHhCC-------CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037          293 PIANGSEEIEIVTIVDILRRAK-------VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  365 (472)
Q Consensus       293 l~~~g~~~~e~~~~~d~l~~a~-------~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~  365 (472)
                      ++||||.++|+++++|+|+.+|       |++++++.+++ ++++++|+++.++..+++.  .++|+||||||.. ....
T Consensus         1 Ll~~gf~~~~~~~~~d~l~~a~~~~~~~~~~~~~vs~~~~-~v~~s~g~~i~~~~~~~~~--~~~D~lvvpg~~~-~~~~   76 (166)
T PF13278_consen    1 LLFPGFSLLELAGPLDVLRAANRLSGEPLFEVRLVSPTGG-PVTSSSGLRIQPDGSLDDA--PDFDILVVPGGPG-FDAA   76 (166)
T ss_dssp             EE-TTB-HHHHHHHHHHHTTCTHHCTTTTEEEEEEESSSC-EEEBTTSEEEEESEETCCC--SCCSEEEEE-STT-HHHH
T ss_pred             CCCCCCcHHHHHHHHHHHHhchhhcCCCCeEEEEEecCCC-eeeecCCeEEEeccChhhc--ccCCEEEeCCCCC-chhc
Confidence            6899999999999999999999       99999999998 9999999999999999996  8899999999984 4556


Q ss_pred             cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhcc-----eecCCcEEECCCEEEcCChhh
Q 012037          366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNE-----VVNGTKVVVDGKVITSRGLAN  440 (472)
Q Consensus       366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~~-----~~~~~~vv~dg~iiTa~g~~~  440 (472)
                      ..++.+++||+++++++++|+++|+|+++||++|+|+|+++|+||...+.+++.     +..++.+|.|||+|||+|..+
T Consensus        77 ~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~~tt~~~~~~~l~~~~p~~~~~~~~~~v~dg~i~Ta~g~~~  156 (166)
T PF13278_consen   77 AKDPALLDWLRQQHAQGTYIAAICTGALLLAEAGLLDGRRATTHWSLAEALRERFPNVNVVSDQLFVDDGNIITAGGPTA  156 (166)
T ss_dssp             TT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHTTTTTTSEE---GGGHHHHHHCTTCEEE-TSSSEEEETTEEEESSCCH
T ss_pred             ccCHHHHHHhhhhhccceEEeeeehHHHHHhhhhccCcccccchHHHHHHHHHhCCCccccCCCEEEECCCeEEecHHHH
Confidence            788999999999999999999999999999999999999999999999999872     335999999999999999999


Q ss_pred             HHHHHHHHHH
Q 012037          441 VIDFALAIVS  450 (472)
Q Consensus       441 ~~d~al~li~  450 (472)
                      ++|+++++||
T Consensus       157 ~~dl~l~li~  166 (166)
T PF13278_consen  157 AIDLALYLIE  166 (166)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhC
Confidence            9999999996

...

>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

Probab=99.97  E-value=2.6e-30  Score=233.09  Aligned_cols=162  Identities=46%  Similarity=0.672  Sum_probs=148.7

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCccee-ccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCC
Q 012037           87 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVE-ASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDC  165 (472)
Q Consensus        87 V~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~-~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~  165 (472)
                      |+||++|||+..|+..++++|+.+||+++++|+++| ++. ++.|..+.+|.++++.+..+||+|+||||......+.++
T Consensus         1 v~il~~~gf~~~e~~~~~~~~~~a~~~v~~vs~~~~-~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~   79 (163)
T cd03135           1 VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKK-LAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADN   79 (163)
T ss_pred             CEEEecCCcchHHHHHHHHHHHHCCCEEEEEEcCCC-ceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhC
Confidence            689999999999999999999999999999999987 765 689999999999998866789999999995345556789


Q ss_pred             hHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCCCccccCcEEEeCCEEeCCCCCChHHHHHH
Q 012037          166 EILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALC  245 (472)
Q Consensus       166 ~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~v~Dg~iiTa~g~~~~~dlal~  245 (472)
                      +.+++||+++++++|+|+++|+| .++|+++|+|+||++|+||.+.+.+.+.++.++.+|+|||++|++|+.++.||+++
T Consensus        80 ~~l~~~l~~~~~~~~~i~~ic~g-~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~l~T~~g~~s~~d~al~  158 (163)
T cd03135          80 EKLIKLLKEFNAKGKLIAAICAA-PAVLAKAGLLKGKKATCYPGFEDKLGGANYVDEPVVVDGNIITSRGPGTAFEFALK  158 (163)
T ss_pred             HHHHHHHHHHHHcCCEEEEEchh-HHHHHHcCCcCCCeEEECchHHHhcCCCeEecCCEEEECCEEEcCCcccHHHHHHH
Confidence            99999999999999999999996 67999999999999999999999997778888899999999999999999999999


Q ss_pred             HHHHH
Q 012037          246 LVEQL  250 (472)
Q Consensus       246 li~~~  250 (472)
                      +|+++
T Consensus       159 li~~l  163 (163)
T cd03135         159 IVEAL  163 (163)
T ss_pred             HHHhC
Confidence            99874

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly

>TIGR01382 PfpI intracellular protease, PfpI family

Probab=99.97  E-value=9.1e-30  Score=230.47  Aligned_cols=162  Identities=27%  Similarity=0.361  Sum_probs=149.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCC
Q 012037           86 KVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDC  165 (472)
Q Consensus        86 kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~  165 (472)
                      ||+||+++||++.|+..++++|+++|+++++++.+++ ++.++.|..+.++.++++.+..+||+|+||||. ....+..+
T Consensus         1 ~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~-~~~~~~~~   78 (166)
T TIGR01382         1 KLLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAG-TTVGKHGYSVTVDATIDEVNPEEYDALVIPGGR-APEYLRLN   78 (166)
T ss_pred             CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEecCCC-ceeccCCceeeccCChhhCCHHHCcEEEECCCC-CHHHhccC
Confidence            6999999999999999999999999999999999876 999999999999999988876789999999994 45555678


Q ss_pred             hHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC--Ccccc-CcEEEeCCEEeCCCCCChHHH
Q 012037          166 EILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVK-SNIHVSGEVTTSRGPGTSFEF  242 (472)
Q Consensus       166 ~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~-~~~v~Dg~iiTa~g~~~~~dl  242 (472)
                      +.+.+||+++++++|+|+++|+| .++|+++|+|+||++|+||...+.+++  ..+.+ +.+|+|||+|||+|+.++.+|
T Consensus        79 ~~l~~~l~~~~~~~~~i~~ic~G-~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~f  157 (166)
T TIGR01382        79 NKAVRLVREFVEKGKPVAAICHG-PQLLISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIEVVVVDGNLVTSRVPDDLPAF  157 (166)
T ss_pred             HHHHHHHHHHHHcCCEEEEEChH-HHHHHhcCccCCCEEEcCccHHHHHHHCCCeEEcCCCEEEECCEEEeCCcccHHHH
Confidence            99999999999999999999996 669999999999999999999998887  66777 689999999999999999999


Q ss_pred             HHHHHHHH
Q 012037          243 ALCLVEQL  250 (472)
Q Consensus       243 al~li~~~  250 (472)
                      +.++++++
T Consensus       158 a~~~~~~l  165 (166)
T TIGR01382       158 NREFLKLL  165 (166)
T ss_pred             HHHHHHHh
Confidence            99999875

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.

>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.96  E-value=1.9e-29  Score=229.21  Aligned_cols=159  Identities=24%  Similarity=0.424  Sum_probs=142.4

Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHhC-CCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccccc
Q 012037          290 VLIPIANGSEEIEIVTIVDILRRA-KVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKS  368 (472)
Q Consensus       290 V~il~~~g~~~~e~~~~~d~l~~a-~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~  368 (472)
                      |+|+++|||+++|++.++++|+++ +|++++++.+++ ++++++|+.|.++..+++.+..+||+|+||||.. ... ..+
T Consensus         1 ~~v~~~~~f~~~e~~~~~~~l~~~~~~~~~~~s~~~~-~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~~-~~~-~~~   77 (170)
T cd03140           1 IAVFLTDEFADWEGAYLAALLNSYEGFEVRTVSPTGE-PVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGDS-WDN-PEA   77 (170)
T ss_pred             CEEEeccchhhhHHHHHHHHhcccCCcEEEEEeCCCC-eeEecCCeEEccccchhHCCHhHccEEEEcCCcc-ccc-CCc
Confidence            589999999999999999999997 799999999998 9999999999999999987656899999999963 332 378


Q ss_pred             HHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChh-hHhhhhc-----ceecCCcEEECCCEEEcCChhhHH
Q 012037          369 RILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPS-VIGKLTN-----EVVNGTKVVVDGKVITSRGLANVI  442 (472)
Q Consensus       369 ~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~-~~~~l~~-----~~~~~~~vv~dg~iiTa~g~~~~~  442 (472)
                      +.+++||+++++++++|++||+|+++||++|+|+||++|+||. ..+.++.     .++.++.+|+|||+|||+|.. ++
T Consensus        78 ~~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~g~a-~~  156 (170)
T cd03140          78 PDLAGLVRQALKQGKPVAAICGATLALARAGLLNNRKHTSNSLDFLKAHAPYYGGAEYYDEPQAVSDGNLITANGTA-PV  156 (170)
T ss_pred             HHHHHHHHHHHHcCCEEEEEChHHHHHHHCCCcCCCcccCChHHHHHHhccccCcccccccCcEEEcCCEEECCCcC-HH
Confidence            8999999999999999999999999999999999999999985 5565643     466789999999999998755 79


Q ss_pred             HHHHHHHHHh
Q 012037          443 DFALAIVSKF  452 (472)
Q Consensus       443 d~al~li~~~  452 (472)
                      ||++++|+++
T Consensus       157 d~al~~i~~l  166 (170)
T cd03140         157 EFAAEILRAL  166 (170)
T ss_pred             HHHHHHHHHc
Confidence            9999999986

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

Probab=99.96  E-value=1.5e-29  Score=228.87  Aligned_cols=160  Identities=27%  Similarity=0.395  Sum_probs=147.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeC-CCcceeccCCc-eeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037           86 KVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVE-PQLEVEASSGT-RLVADTSISNCSHQVFDLIALPGGMPGSVRLR  163 (472)
Q Consensus        86 kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~-~g~~v~~~~G~-~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~  163 (472)
                      ||+|+++|||+..|+..++++|+++||++++++++ ++ +++++.|. .+.+|..+++....+||+|+||||. ....+.
T Consensus         1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~v~~vs~~~~~-~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~-~~~~~~   78 (165)
T cd03134           1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGG-EIQGKHGYDTVTVDLTIADVDADDYDALVIPGGT-NPDKLR   78 (165)
T ss_pred             CEEEEcCCCchHHHHHHHHHHHHHCCCEEEEEccCCCc-ccccCcCceeecCCCChHHCCHHHCCEEEECCCC-Chhhhc
Confidence            69999999999999999999999999999999999 66 99999999 9999999988776689999999995 555567


Q ss_pred             CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC--CccccCcEEEeCCEEeCCCCCChHH
Q 012037          164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRGPGTSFE  241 (472)
Q Consensus       164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~~v~Dg~iiTa~g~~~~~d  241 (472)
                      .++.+++||+++++++|+|+++|+| .++|+++|+|+||++|+||...+.+++  ..+.++.+++|||+|||+|+.++++
T Consensus        79 ~~~~~~~~l~~~~~~~~~i~~ic~G-~~~La~aglL~g~~~T~h~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~  157 (165)
T cd03134          79 RDPDAVAFVRAFAEAGKPVAAICHG-PWVLISAGVVRGRKLTSYPSIKDDLINAGANWVDEEVVVDGNLITSRNPDDLPA  157 (165)
T ss_pred             cCHHHHHHHHHHHHcCCeEEEEchH-HHHHHhcCccCCCEeeCCHhHHHHHHHcCCeEecCCEEEECCEEEecCcchHHH
Confidence            7899999999999999999999996 669999999999999999999998887  6677888999999999999999999


Q ss_pred             HHHHHHH
Q 012037          242 FALCLVE  248 (472)
Q Consensus       242 lal~li~  248 (472)
                      |+..+|+
T Consensus       158 f~~~~~~  164 (165)
T cd03134         158 FNRAILK  164 (165)
T ss_pred             HHHHHHh
Confidence            9999986

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.

>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]

Probab=99.96  E-value=2.2e-29  Score=227.60  Aligned_cols=183  Identities=40%  Similarity=0.652  Sum_probs=170.9

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ  366 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~  366 (472)
                      ++.+.++..+|.+++|+..+.|+|++.|.+|++++++++.++.++.|.++.+|..+.|.-..+||+++||||..+.+.+.
T Consensus         5 ~~~vlil~~~g~Ee~E~ivp~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~   84 (247)
T KOG2764|consen    5 KKAVLILCADGMEEYEFIVPIDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLS   84 (247)
T ss_pred             cccEEEEccCCcceeEEEEeHHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhhhhh
Confidence            46788888999999999999999999999999999999889999999999999998887668999999999966789999


Q ss_pred             ccHHHHHHHHHHHHcCCeEEEEchhH-HHHHHcCCCCCceeccChhhHhhhhc--ceecCCcEEECCCEEEcCChhhHHH
Q 012037          367 KSRILKKLLKEQKVAGRIYGAVCSSP-IVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLANVID  443 (472)
Q Consensus       367 ~~~~l~~~L~~~~~~g~~v~aic~G~-~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~vv~dg~iiTa~g~~~~~d  443 (472)
                      +.+.+.+.+++|.+.|++|++||+|+ .+|+..|++.|+++|+|+...+.+.+  .++.+.++|+|||+||++|+.++++
T Consensus        85 ~~~~v~~lvK~q~~~gkLIaaICaap~~al~a~gl~~gkk~T~~ps~k~~L~~~gy~yve~~vv~dG~liTSrGpgT~~e  164 (247)
T KOG2764|consen   85 ECEKVVDLVKEQAESGKLIAAICAAPLTALAAHGLLGGKKCTAHPSVKPKLEEGGYKYVEPRVVKDGNLITSRGPGTAFE  164 (247)
T ss_pred             hcHHHHHHHHHHHhcCCeEEEeecchHHHHhhccccccceeeeccchhhhHhhcCcEEecCCeEEeCcEEeccCCCchHH
Confidence            99999999999999999999999999 67777788889999999999999998  7899999999999999999999999


Q ss_pred             HHHHHHHHhcCHHHHHHHHhhccccc
Q 012037          444 FALAIVSKFFGHARTRSVAEGLVFEY  469 (472)
Q Consensus       444 ~al~li~~~~g~~~A~~va~~l~~~~  469 (472)
                      |++.|+|.+.|++.+.++.+.+.+-+
T Consensus       165 Fal~lvEqL~GKeka~~v~~~l~l~~  190 (247)
T KOG2764|consen  165 FALKLVEQLGGKEKANEVKKPLSLLF  190 (247)
T ss_pred             HHHHHHHHhcCchhhhhhhccceeec
Confidence            99999999999999999998887643

>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.96  E-value=8.7e-29  Score=227.08  Aligned_cols=163  Identities=21%  Similarity=0.383  Sum_probs=145.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCc--ceec-------------CCCcEEeecCCccccCCCcccEE
Q 012037          289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERST--QIVA-------------SQGVKIIADKSISDAAESVYDLI  353 (472)
Q Consensus       289 ~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~--~v~s-------------~~G~~v~~d~~l~~~~~~~~D~l  353 (472)
                      ||+|+++|||++.|+..++++|+++|++++++|++++.  +++.             ..|..+.++..+++....+||+|
T Consensus         1 kv~il~~~g~~~~e~~~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l   80 (180)
T cd03169           1 KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPDDYDAL   80 (180)
T ss_pred             CEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCCHhHCCEE
Confidence            68999999999999999999999999999999999861  2333             36899999999998866689999


Q ss_pred             EEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc--ceecCCcEEECCC
Q 012037          354 ILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGK  431 (472)
Q Consensus       354 ivpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~vv~dg~  431 (472)
                      +||||. +...+..++.+.+||+++++++++|++||+|+++|+++|||+||++|+||...+.+++  ..+.++.+++|||
T Consensus        81 iv~GG~-~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~agll~g~~~T~h~~~~~~~~~~~~~~~~~~~v~D~~  159 (180)
T cd03169          81 VIPGGR-APEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAAGVLKGRRCTAYPACKPEVELAGGTVVDDGVVVDGN  159 (180)
T ss_pred             EEcCCC-ChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHcCccCCCEEecccchHHHHHHCCCEEeeccEEEECC
Confidence            999997 4444567889999999999999999999999999999999999999999999988886  3467788999999


Q ss_pred             EEEcCChhhHHHHHHHHHHHh
Q 012037          432 VITSRGLANVIDFALAIVSKF  452 (472)
Q Consensus       432 iiTa~g~~~~~d~al~li~~~  452 (472)
                      +|||+|+.+..+|+.++++.+
T Consensus       160 iiT~~~~~~~~~f~~~~~~~l  180 (180)
T cd03169         160 LVTAQAWPDHPAFLREFLKLL  180 (180)
T ss_pred             EEEecCCchHHHHHHHHHHhC
Confidence            999999999999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PRK09393 ftrA transcriptional activator FtrA; Provisional

Probab=99.96  E-value=7e-29  Score=248.46  Aligned_cols=185  Identities=22%  Similarity=0.265  Sum_probs=163.0

Q ss_pred             CCCCCCcEEEEEeCCCCcHHHHHHHHHHHHhC-------CCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEE
Q 012037           79 NSAVPPKKVLVPVGFGTEEMEAVIIVDVLRRA-------GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIA  151 (472)
Q Consensus        79 ~~~~~~~kV~ill~~g~~~~e~~~~~~~l~~a-------g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vi  151 (472)
                      +++..+++|+|+++|||+.+|+.+++|+|+.+       .|+|++++.+++ +|++++|+.+.+|..+++.+  +||+|+
T Consensus         4 ~~~~~~~~v~ill~~gf~~~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~~-~v~ss~g~~i~~d~~~~~~~--~~D~li   80 (322)
T PRK09393          4 MMTMHNHLVVALAYDGLCTFEFGCAVEIFGLPRPELGVDWYRFAVAAVEPG-PLRAAGGITVVADGGLELLD--RADTIV   80 (322)
T ss_pred             cccccccEEEEEEcCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEECCCC-ceEeCCCcEEeCCCCccccC--CCCEEE
Confidence            34455689999999999999999999999764       279999999987 99999999999999998765  899999


Q ss_pred             EcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC-C---ccccC-cEEE
Q 012037          152 LPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-F---WAVKS-NIHV  226 (472)
Q Consensus       152 vpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~-~---~~~~~-~~v~  226 (472)
                      ||||. +... ..++.+.+||+++++++++|++||+| .++||++|+|+|+++|+||.+.+.|++ +   .+.++ .++.
T Consensus        81 vpGg~-~~~~-~~~~~l~~~l~~~~~~~~~i~aic~g-~~~La~aGlL~~~~~Tth~~~~~~~~~~~p~~~~~~~~~~v~  157 (322)
T PRK09393         81 IPGWR-GPDA-PVPEPLLEALRAAHARGARLCSICSG-VFVLAAAGLLDGRRATTHWRYAERLQARYPAIRVDPDVLYVD  157 (322)
T ss_pred             ECCCC-cccc-cCCHHHHHHHHHHHHcCCEEEEEcHH-HHHHHhccCCCCCeeeecHhhHHHHHHHCCCCEEeCCceEEe
Confidence            99984 4333 46899999999999999999999996 679999999999999999999998876 3   33443 5888


Q ss_pred             eCCEEeCCCCCChHHHHHHHHHHHhCchhHHhhhhccccccCC
Q 012037          227 SGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNAD  269 (472)
Q Consensus       227 Dg~iiTa~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~~~~  269 (472)
                      |||++||+|+.+++|+++++|++.+|.+.++.+++.|+++..+
T Consensus       158 ~g~iiT~~G~~a~~d~~l~li~~~~g~~~a~~va~~ll~~~~~  200 (322)
T PRK09393        158 EGQILTSAGSAAGIDLCLHLVRRDFGSEAANRVARRLVVPPHR  200 (322)
T ss_pred             cCCEEecccHHHHHHHHHHHHHHHhCHHHHHHHHHHhCcCcCC
Confidence            9999999999999999999999999999999999999987655

>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.96  E-value=3.9e-28  Score=222.78  Aligned_cols=163  Identities=22%  Similarity=0.311  Sum_probs=144.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCc--ceec-------------cCCceeeeCCCcCCCCCCcccEE
Q 012037           86 KVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQL--EVEA-------------SSGTRLVADTSISNCSHQVFDLI  150 (472)
Q Consensus        86 kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~--~v~~-------------~~G~~v~~d~~~~~~~~~~~D~v  150 (472)
                      ||+|+++|||+..|+..++++|+++|+++++++++++.  +++.             ..|..+.++.++++.++.+||+|
T Consensus         1 kv~il~~~g~~~~e~~~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l   80 (180)
T cd03169           1 KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPDDYDAL   80 (180)
T ss_pred             CEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCCHhHCCEE
Confidence            69999999999999999999999999999999999752  2333             25889999999998877789999


Q ss_pred             EEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC--CccccCcEEEeC
Q 012037          151 ALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSG  228 (472)
Q Consensus       151 ivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~~v~Dg  228 (472)
                      +||||. +...+..++.+.+||+++++++|+|++||+| .++|+++|+|+||++|+||...+.+++  ..+.+++++.||
T Consensus        81 iv~GG~-~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G-~~~La~agll~g~~~T~h~~~~~~~~~~~~~~~~~~~v~D~  158 (180)
T cd03169          81 VIPGGR-APEYLRLDEKVLAIVRHFAEANKPVAAICHG-PQILAAAGVLKGRRCTAYPACKPEVELAGGTVVDDGVVVDG  158 (180)
T ss_pred             EEcCCC-ChhhhccCHHHHHHHHHHHHcCCEEEEECcH-HHHHHHcCccCCCEEecccchHHHHHHCCCEEeeccEEEEC
Confidence            999994 4444567889999999999999999999996 569999999999999999999988887  457778899999


Q ss_pred             CEEeCCCCCChHHHHHHHHHHH
Q 012037          229 EVTTSRGPGTSFEFALCLVEQL  250 (472)
Q Consensus       229 ~iiTa~g~~~~~dlal~li~~~  250 (472)
                      |+|||+|+.++.+|+.++++.+
T Consensus       159 ~iiT~~~~~~~~~f~~~~~~~l  180 (180)
T cd03169         159 NLVTAQAWPDHPAFLREFLKLL  180 (180)
T ss_pred             CEEEecCCchHHHHHHHHHHhC
Confidence            9999999999999999999863

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C

Probab=99.96  E-value=2.2e-28  Score=221.41  Aligned_cols=154  Identities=29%  Similarity=0.385  Sum_probs=134.3

Q ss_pred             EeCCCCcHHHHHHHHHHHHhCC-------CEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037           90 PVGFGTEEMEAVIIVDVLRRAG-------AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL  162 (472)
Q Consensus        90 ll~~g~~~~e~~~~~~~l~~ag-------~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l  162 (472)
                      |++|||+..+++.++|+|+.++       |++++++.+++ ++++++|+.+.++..+++..  ++|+|+||||. .....
T Consensus         1 Ll~~gf~~~~~~~~~d~l~~a~~~~~~~~~~~~~vs~~~~-~v~~s~g~~i~~~~~~~~~~--~~D~lvvpg~~-~~~~~   76 (166)
T PF13278_consen    1 LLFPGFSLLELAGPLDVLRAANRLSGEPLFEVRLVSPTGG-PVTSSSGLRIQPDGSLDDAP--DFDILVVPGGP-GFDAA   76 (166)
T ss_dssp             EE-TTB-HHHHHHHHHHHTTCTHHCTTTTEEEEEEESSSC-EEEBTTSEEEEESEETCCCS--CCSEEEEE-ST-THHHH
T ss_pred             CCCCCCcHHHHHHHHHHHHhchhhcCCCCeEEEEEecCCC-eeeecCCeEEEeccChhhcc--cCCEEEeCCCC-Cchhc
Confidence            6899999999999999999997       99999999986 99999999999999999855  89999999995 34556


Q ss_pred             cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC-Cc---cc-cCcEEEeCCEEeCCCCC
Q 012037          163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-FW---AV-KSNIHVSGEVTTSRGPG  237 (472)
Q Consensus       163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~-~~---~~-~~~~v~Dg~iiTa~g~~  237 (472)
                      ..++.+++||+++++++++|+++|+| +++|+++|+|+|+++|+||...+.|++ ++   +. ++.+|.|||++||+|..
T Consensus        77 ~~~~~l~~~l~~~~~~~~~i~aic~G-~~~La~aGlL~g~~~tt~~~~~~~l~~~~p~~~~~~~~~~v~dg~i~Ta~g~~  155 (166)
T PF13278_consen   77 AKDPALLDWLRQQHAQGTYIAAICTG-ALLLAEAGLLDGRRATTHWSLAEALRERFPNVNVVSDQLFVDDGNIITAGGPT  155 (166)
T ss_dssp             TT-HHHHHHHHHHHCCTSEEEEETTH-HHHHHHTTTTTTSEE---GGGHHHHHHCTTCEEE-TSSSEEEETTEEEESSCC
T ss_pred             ccCHHHHHHhhhhhccceEEeeeehH-HHHHhhhhccCcccccchHHHHHHHHHhCCCccccCCCEEEECCCeEEecHHH
Confidence            67899999999999999999999995 789999999999999999999999988 43   33 77899999999999999


Q ss_pred             ChHHHHHHHHH
Q 012037          238 TSFEFALCLVE  248 (472)
Q Consensus       238 ~~~dlal~li~  248 (472)
                      +++|++++|||
T Consensus       156 ~~~dl~l~li~  166 (166)
T PF13278_consen  156 AAIDLALYLIE  166 (166)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            99999999996

...

>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.95  E-value=1.7e-27  Score=216.42  Aligned_cols=159  Identities=23%  Similarity=0.319  Sum_probs=140.4

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHhC-CCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCC
Q 012037           87 VLVPVGFGTEEMEAVIIVDVLRRA-GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDC  165 (472)
Q Consensus        87 V~ill~~g~~~~e~~~~~~~l~~a-g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~  165 (472)
                      |+|+++|||++.|+..+++.|+++ +|++++++++++ ++++++|+.+.++.++++.+..+||+|+||||. ... ...+
T Consensus         1 ~~v~~~~~f~~~e~~~~~~~l~~~~~~~~~~~s~~~~-~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~-~~~-~~~~   77 (170)
T cd03140           1 IAVFLTDEFADWEGAYLAALLNSYEGFEVRTVSPTGE-PVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGD-SWD-NPEA   77 (170)
T ss_pred             CEEEeccchhhhHHHHHHHHhcccCCcEEEEEeCCCC-eeEecCCeEEccccchhHCCHhHccEEEEcCCc-ccc-cCCc
Confidence            689999999999999999999997 899999999987 999999999999999998755689999999994 332 3478


Q ss_pred             hHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcc-hhccCCC-----CccccCcEEEeCCEEeCCCCCCh
Q 012037          166 EILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPA-FTDKLPT-----FWAVKSNIHVSGEVTTSRGPGTS  239 (472)
Q Consensus       166 ~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~-~~~~l~~-----~~~~~~~~v~Dg~iiTa~g~~~~  239 (472)
                      +.+.+||+++++++++|+++|+| .++|+++|+|+||++|+||. +.+.+++     ..+.++.+|+|||+|||+| .++
T Consensus        78 ~~l~~~l~~~~~~~~~i~aic~G-~~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~g-~a~  155 (170)
T cd03140          78 PDLAGLVRQALKQGKPVAAICGA-TLALARAGLLNNRKHTSNSLDFLKAHAPYYGGAEYYDEPQAVSDGNLITANG-TAP  155 (170)
T ss_pred             HHHHHHHHHHHHcCCEEEEEChH-HHHHHHCCCcCCCcccCChHHHHHHhccccCcccccccCcEEEcCCEEECCC-cCH
Confidence            99999999999999999999996 66999999999999999986 5666653     3566888999999999987 558


Q ss_pred             HHHHHHHHHHH
Q 012037          240 FEFALCLVEQL  250 (472)
Q Consensus       240 ~dlal~li~~~  250 (472)
                      +||++++|+++
T Consensus       156 ~d~al~~i~~l  166 (170)
T cd03140         156 VEFAAEILRAL  166 (170)
T ss_pred             HHHHHHHHHHc
Confidence            99999999975

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein

Probab=99.93  E-value=8.8e-26  Score=213.78  Aligned_cols=157  Identities=20%  Similarity=0.230  Sum_probs=134.4

Q ss_pred             CCCCHHHHHHHHHHHHhCCCeEEEEEecCCcce---------------------ecCCCcEEeecCCccccCCCcccEEE
Q 012037          296 NGSEEIEIVTIVDILRRAKVDVVVASVERSTQI---------------------VASQGVKIIADKSISDAAESVYDLII  354 (472)
Q Consensus       296 ~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v---------------------~s~~G~~v~~d~~l~~~~~~~~D~li  354 (472)
                      .|++..|+..|+++|+++|++|+++|++|+..+                     .++.+.++.++..+++++.++||+|+
T Consensus        20 tG~~~~E~~~p~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~   99 (231)
T cd03147          20 TGVFFSEALHPFNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFF   99 (231)
T ss_pred             cccCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEE
Confidence            689999999999999999999999999874111                     22345567788899999889999999


Q ss_pred             EcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc-------CCCCCceeccChhhH--------------
Q 012037          355 LPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH-------GLLKAKKATAHPSVI--------------  413 (472)
Q Consensus       355 vpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a-------GlL~g~~~T~~~~~~--------------  413 (472)
                      ||||+++...+.+++.++++|++|+++||+|++||+|+.+|+.+       ++++||++|+|+..+              
T Consensus       100 iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a~~~~~g~~ll~Gk~vT~~~~~ee~~~~~~~~~~~~~  179 (231)
T cd03147         100 VAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANLKDPKTGKPLIKGKTVTGFTDKGEEIMGVMEILKKRN  179 (231)
T ss_pred             ECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhhhcccCCCcccCCCEEEeeCcHHHHhhhhhhhhcccC
Confidence            99998666778999999999999999999999999999999987       999999999998653              


Q ss_pred             -----hhhhc--ceec------CCcEEECCCEEEcCChhhHHHHHHHHHHHh
Q 012037          414 -----GKLTN--EVVN------GTKVVVDGKVITSRGLANVIDFALAIVSKF  452 (472)
Q Consensus       414 -----~~l~~--~~~~------~~~vv~dg~iiTa~g~~~~~d~al~li~~~  452 (472)
                           +.+++  ..+.      +..+|+|||+||++++.++.+|++.|++++
T Consensus       180 ~~~~e~~l~~~Ga~~~~~~~~~~~~VvvDgnLITgq~p~sa~~~a~~iv~~l  231 (231)
T cd03147         180 LESIEDIAERAGANFIRPPGPWDDFTVVDGRIVTGSNPASATSTAEAAIKAL  231 (231)
T ss_pred             CccHHHHHHHcCCEEEccCCCCCCcEEEcCCEEeCCCcccHHHHHHHHHHhC
Confidence                 33332  3333      455999999999999999999999999875

Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.

>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

Probab=99.93  E-value=1.1e-25  Score=212.83  Aligned_cols=156  Identities=28%  Similarity=0.339  Sum_probs=134.3

Q ss_pred             CCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceec--------------------CCCcEEeecCCccccCCCcccEEEE
Q 012037          296 NGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVA--------------------SQGVKIIADKSISDAAESVYDLIIL  355 (472)
Q Consensus       296 ~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s--------------------~~G~~v~~d~~l~~~~~~~~D~liv  355 (472)
                      +||++.|+..|+++|+++|++|+++|++++ .+..                    ..|.++.++..+++++.++||+|+|
T Consensus        18 ~G~~~~E~~~p~~~l~~aG~~V~~as~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dal~i   96 (221)
T cd03141          18 TGLWLEELAHPYDVFTEAGYEVDFASPKGG-KVPLDPRSLDAEDDDDASVFDNDEEFKKKLANTKKLSDVDPSDYDAIFI   96 (221)
T ss_pred             CccCHHHHHHHHHHHHHCCCeEEEECCCCC-CCCcCchhccccccCHHHHhhcCHHHHHHHHccCChhHCCHhHceEEEE
Confidence            799999999999999999999999999886 4221                    2345578899999998889999999


Q ss_pred             cCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC------CCCCceeccChhhHhh--------------
Q 012037          356 PGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG------LLKAKKATAHPSVIGK--------------  415 (472)
Q Consensus       356 pGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG------lL~g~~~T~~~~~~~~--------------  415 (472)
                      |||......+..++.+++||+++++++++|++||+|+++|+++|      +|+||++|+||...+.              
T Consensus        97 pGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ag~~~~~~ll~gr~~T~~~~~~~~~~~~~~~~~~~~~~  176 (221)
T cd03141          97 PGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNVKLSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLLED  176 (221)
T ss_pred             CCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhccCcCCCeeeCCcEEeccCCHHHHhcCccCcCCcCHHH
Confidence            99975445677899999999999999999999999999999999      7999999999876554              


Q ss_pred             -hhc--ceecC-----CcEEECCCEEEcCChhhHHHHHHHHHHHh
Q 012037          416 -LTN--EVVNG-----TKVVVDGKVITSRGLANVIDFALAIVSKF  452 (472)
Q Consensus       416 -l~~--~~~~~-----~~vv~dg~iiTa~g~~~~~d~al~li~~~  452 (472)
                       +++  ..+.+     ..+|+|+|+||++|+.++.+|++++|+.+
T Consensus       177 ~l~~~g~~~~~~~~~~~~vv~D~~lvT~~~p~s~~~~a~~~i~~l  221 (221)
T cd03141         177 ELKELGANYVKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL  221 (221)
T ss_pred             HHHHcCCEeecCCCCCCCEEEeCCEeeCCCchhHHHHHHHHHHhC
Confidence             333  23333     56999999999999999999999999874

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different

>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein

Probab=99.92  E-value=2.8e-25  Score=210.36  Aligned_cols=157  Identities=19%  Similarity=0.229  Sum_probs=132.0

Q ss_pred             CCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcce---------------------eccCCceeeeCCCcCCCCCCcccEEE
Q 012037           93 FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEV---------------------EASSGTRLVADTSISNCSHQVFDLIA  151 (472)
Q Consensus        93 ~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v---------------------~~~~G~~v~~d~~~~~~~~~~~D~vi  151 (472)
                      .|++..|+..++++|+++|++|+++|++++.++                     .++.+..+.++..+++++..+||+|+
T Consensus        20 tG~~~~E~~~p~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~   99 (231)
T cd03147          20 TGVFFSEALHPFNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFF   99 (231)
T ss_pred             cccCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEE
Confidence            689999999999999999999999999753111                     12334467788899998888999999


Q ss_pred             EcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC-------CCCCCceeecCcchh-------------
Q 012037          152 LPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW-------GLLRRKQITCHPAFT-------------  211 (472)
Q Consensus       152 vpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a-------GlL~g~~~T~~~~~~-------------  211 (472)
                      ||||++....+.+++.+.++|+++++++|+|++||+|++ +|+.+       ++++||++|+|+...             
T Consensus       100 iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~-~L~~a~~~~~g~~ll~Gk~vT~~~~~ee~~~~~~~~~~~~  178 (231)
T cd03147         100 VAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPA-ILANLKDPKTGKPLIKGKTVTGFTDKGEEIMGVMEILKKR  178 (231)
T ss_pred             ECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHH-HHHhhhcccCCCcccCCCEEEeeCcHHHHhhhhhhhhccc
Confidence            999987777899999999999999999999999999987 67766       899999999999754             


Q ss_pred             ------ccCCC--Ccccc------CcEEEeCCEEeCCCCCChHHHHHHHHHHH
Q 012037          212 ------DKLPT--FWAVK------SNIHVSGEVTTSRGPGTSFEFALCLVEQL  250 (472)
Q Consensus       212 ------~~l~~--~~~~~------~~~v~Dg~iiTa~g~~~~~dlal~li~~~  250 (472)
                            +.+++  +.|.+      ..+|+|||+||++++.++.+|++++++++
T Consensus       179 ~~~~~e~~l~~~Ga~~~~~~~~~~~~VvvDgnLITgq~p~sa~~~a~~iv~~l  231 (231)
T cd03147         179 NLESIEDIAERAGANFIRPPGPWDDFTVVDGRIVTGSNPASATSTAEAAIKAL  231 (231)
T ss_pred             CCccHHHHHHHcCCEEEccCCCCCCcEEEcCCEEeCCCcccHHHHHHHHHHhC
Confidence                  22332  45553      34899999999999999999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.

>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]

Probab=99.92  E-value=2.1e-24  Score=199.41  Aligned_cols=170  Identities=34%  Similarity=0.558  Sum_probs=150.8

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCC-cceecCCC-cEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERS-TQIVASQG-VKIIADKSISDAAESVYDLIILPGGVAGAER  364 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~-~~v~s~~G-~~v~~d~~l~~~~~~~~D~livpGG~~~~~~  364 (472)
                      ++||++++++||++.|+..|+++|+++++.+++++..++ ..+.+..| ..+.++..+++++..+||+|++|||..++..
T Consensus         2 ~~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~   81 (188)
T COG0693           2 MKKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEY   81 (188)
T ss_pred             CceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhh
Confidence            578999999999999999999999999999999999984 35666655 6666778888886679999999999436777


Q ss_pred             ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC-CCCCceeccChhhHhhhhc------ceecCC-----cEEECCC-
Q 012037          365 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG-LLKAKKATAHPSVIGKLTN------EVVNGT-----KVVVDGK-  431 (472)
Q Consensus       365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG-lL~g~~~T~~~~~~~~l~~------~~~~~~-----~vv~dg~-  431 (472)
                      +..++.+++|++++++++++|++||+|+.+|+.+| +|+||++|+++...+...+      ..+.+.     .++.||| 
T Consensus        82 ~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag~ll~g~~~t~~~~~~~~~~~~~~~~ga~~vd~~~~~~~vv~dg~~  161 (188)
T COG0693          82 LRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVDAPLWTDEVVVDGNA  161 (188)
T ss_pred             ccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhccccccCCceEeecCchHHHHHhHHHhcCceEeccccCcCCEEEECCe
Confidence            77779999999999999999999999999999999 9999999999988888766      566666     9999999 


Q ss_pred             EEEcCChhhHHHHHHHHHHHhcCHH
Q 012037          432 VITSRGLANVIDFALAIVSKFFGHA  456 (472)
Q Consensus       432 iiTa~g~~~~~d~al~li~~~~g~~  456 (472)
                      ++|+.++.++.+++..+++++.+..
T Consensus       162 lvt~~~p~~~~~~~~~~~~~l~~~~  186 (188)
T COG0693         162 LVTGRNPASAPAFALELLKALGGAE  186 (188)
T ss_pred             EEEcCCcccHHHHHHHHHHHHhccc
Confidence            9999999999999999999988754

>PRK04155 chaperone protein HchA; Provisional

Probab=99.92  E-value=3.4e-24  Score=208.21  Aligned_cols=167  Identities=19%  Similarity=0.238  Sum_probs=136.5

Q ss_pred             CCCEEEEEeC--------------CCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecC-----------------CCc
Q 012037          286 RMPRVLIPIA--------------NGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVAS-----------------QGV  334 (472)
Q Consensus       286 ~~~~V~il~~--------------~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~-----------------~G~  334 (472)
                      ..+||+|++.              .|+++.|+..|+++|+++||+|+++|++|+ ++...                 .+.
T Consensus        48 ~~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G~-~~~~d~~s~~~~d~~v~~~~~~~~~  126 (287)
T PRK04155         48 GGKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSGN-PVKFEYWAMPHEDEAVMGFYEKYKS  126 (287)
T ss_pred             CCCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCCC-ccccccccccccchhHHHHHHHhhh
Confidence            3458998876              689999999999999999999999999886 43221                 122


Q ss_pred             EEeecCCcccc----C--CCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC------CCC
Q 012037          335 KIIADKSISDA----A--ESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG------LLK  402 (472)
Q Consensus       335 ~v~~d~~l~~~----~--~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG------lL~  402 (472)
                      .+..+..++++    .  .++||+||||||++....+..++.+.++|+++++++|+|++||+|+++|..+|      +++
T Consensus       127 ~l~~~~~l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a~~~~g~~ll~  206 (287)
T PRK04155        127 KFKQPKKLADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAAGVDHGDNPLN  206 (287)
T ss_pred             hccCceeHHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHcCCcCCCcccC
Confidence            23333334333    2  57999999999987678899999999999999999999999999999999999      999


Q ss_pred             CceeccChhh-------------------Hhhhhc--ceecC----CcEEECCCEEEcCChhhHHHHHHHHHHHhc
Q 012037          403 AKKATAHPSV-------------------IGKLTN--EVVNG----TKVVVDGKVITSRGLANVIDFALAIVSKFF  453 (472)
Q Consensus       403 g~~~T~~~~~-------------------~~~l~~--~~~~~----~~vv~dg~iiTa~g~~~~~d~al~li~~~~  453 (472)
                      ||++|+|+..                   .+.+++  ..+.+    ..+|+|||+||++|+.++.+|++.+++.+.
T Consensus       207 GkkvT~fp~~~e~~~~~~~~~~~~~~~~~e~~L~~~Ga~~~~~~~~~~VvvDg~LITGq~P~sa~~fa~~~~~~Ll  282 (287)
T PRK04155        207 GYSICAFPDALDKQTPEIGYMPGHLTWLFGEELKKMGVNIVNDDITGRVHKDRKLLTGDSPLASNALGKLAAQELL  282 (287)
T ss_pred             CCEEeeCCCHHHhhccccccccccccchHHHHHHHcCCEEEcCCCCCCEEEeCCEEeCCChhHHHHHHHHHHHHHH
Confidence            9999998765                   334443  23334    589999999999999999999999999876

>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

Probab=99.91  E-value=1.2e-24  Score=205.60  Aligned_cols=157  Identities=25%  Similarity=0.302  Sum_probs=132.9

Q ss_pred             CCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceec--------------------cCCceeeeCCCcCCCCCCcccEEE
Q 012037           92 GFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEA--------------------SSGTRLVADTSISNCSHQVFDLIA  151 (472)
Q Consensus        92 ~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~--------------------~~G~~v~~d~~~~~~~~~~~D~vi  151 (472)
                      .+||++.|+..|+++|+++|++|++++++++ .+..                    ..|..+.++..+++++..+||+|+
T Consensus        17 ~~G~~~~E~~~p~~~l~~aG~~V~~as~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dal~   95 (221)
T cd03141          17 PTGLWLEELAHPYDVFTEAGYEVDFASPKGG-KVPLDPRSLDAEDDDDASVFDNDEEFKKKLANTKKLSDVDPSDYDAIF   95 (221)
T ss_pred             cCccCHHHHHHHHHHHHHCCCeEEEECCCCC-CCCcCchhccccccCHHHHhhcCHHHHHHHHccCChhHCCHhHceEEE
Confidence            4899999999999999999999999999875 3221                    233457889999999888999999


Q ss_pred             EcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCC------CCCCceeecCcchhcc------------
Q 012037          152 LPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG------LLRRKQITCHPAFTDK------------  213 (472)
Q Consensus       152 vpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aG------lL~g~~~T~~~~~~~~------------  213 (472)
                      ||||......+..++.+.+||+++++++|+|++||+|+ ++|+++|      +|+||++|+||...+.            
T Consensus        96 ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~-~~La~ag~~~~~~ll~gr~~T~~~~~~~~~~~~~~~~~~~~  174 (221)
T cd03141          96 IPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGP-AALLNVKLSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLL  174 (221)
T ss_pred             ECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchH-HHHHhccCcCCCeeeCCcEEeccCCHHHHhcCccCcCCcCH
Confidence            99996445567889999999999999999999999974 5899999      7999999999987654            


Q ss_pred             ---CCC--Ccccc-----CcEEEeCCEEeCCCCCChHHHHHHHHHHH
Q 012037          214 ---LPT--FWAVK-----SNIHVSGEVTTSRGPGTSFEFALCLVEQL  250 (472)
Q Consensus       214 ---l~~--~~~~~-----~~~v~Dg~iiTa~g~~~~~dlal~li~~~  250 (472)
                         +++  ..|.+     ..+|+|+|+||++|+.++.+|++.+|+.+
T Consensus       175 ~~~l~~~g~~~~~~~~~~~~vv~D~~lvT~~~p~s~~~~a~~~i~~l  221 (221)
T cd03141         175 EDELKELGANYVKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL  221 (221)
T ss_pred             HHHHHHcCCEeecCCCCCCCEEEeCCEeeCCCchhHHHHHHHHHHhC
Confidence               332  33443     45999999999999999999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different

>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity

Probab=99.91  E-value=7.3e-24  Score=187.87  Aligned_cols=137  Identities=42%  Similarity=0.616  Sum_probs=121.8

Q ss_pred             eEEEEEecCCcceecCCC---cEEeecCCccccCCCcccEEEEcCCCcchhccccc-HHHHHHHHHHHHcCCeEEEEchh
Q 012037          316 DVVVASVERSTQIVASQG---VKIIADKSISDAAESVYDLIILPGGVAGAERLQKS-RILKKLLKEQKVAGRIYGAVCSS  391 (472)
Q Consensus       316 ~v~~vs~~~~~~v~s~~G---~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~-~~l~~~L~~~~~~g~~v~aic~G  391 (472)
                      +|++++...+..++++.|   .++.+|..+++++..+||+||||||....+.+..+ +.++++|+++++++|+|++||+|
T Consensus         1 ~V~~vs~~~~~~v~~~~g~~~~~v~~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g   80 (147)
T PF01965_consen    1 KVDVVSPGDGKEVTGSHGSFGIKVTPDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHG   80 (147)
T ss_dssp             EEEEEESSSSSEEEBTTSHHHHEEESSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTC
T ss_pred             CEEEEECCCCCeEEcCCCcCCEEEECCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCC
Confidence            588999988768999999   99999999999999999999999998657788745 99999999999999999999999


Q ss_pred             HHHHHHcCCCCCceeccChhhHhhhhc--ceecC--CcEEECC-CEEEcCChhhHHHHHHHHHHHh
Q 012037          392 PIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNG--TKVVVDG-KVITSRGLANVIDFALAIVSKF  452 (472)
Q Consensus       392 ~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~--~~vv~dg-~iiTa~g~~~~~d~al~li~~~  452 (472)
                      +.+|+++|+|+|+++|+|+...+.++.  ..+.+  ..+++|| |+||++|+.++.+|++++|+.|
T Consensus        81 ~~~L~~~gll~g~~~T~~~~~~~~~~~~g~~~~~~~~~~vvD~~nlIT~~~~~~~~~fa~~ive~L  146 (147)
T PF01965_consen   81 PAVLAAAGLLKGKKVTSYPNDEEDLENAGANYVDQDDPVVVDGGNLITGRGPGSAIEFALAIVEAL  146 (147)
T ss_dssp             HHHHHHTTTTTTSEEC-SGGGHHHHHHTTTEEBSCSSSEEEETTTEEEESSGGGHHHHHHHHHHHH
T ss_pred             cchhhccCccCCceeecCccHHHHHHHCCCEEEecCCCeEEECCeEEECCChhhHHHHHHHHHHHc
Confidence            999999999999999999998886665  34444  8899999 9999999999999999999986

Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....

>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]

Probab=99.91  E-value=1.5e-23  Score=193.65  Aligned_cols=170  Identities=29%  Similarity=0.439  Sum_probs=151.0

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCC-cceeccCC-ceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQ-LEVEASSG-TRLVADTSISNCSHQVFDLIALPGGMPGSVR  161 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g-~~v~~~~G-~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~  161 (472)
                      ++||++++++||+..|+..|+++|+++|++++++++..+ ..+.+..| ..+.++..+++.+..+||+|++|||..+...
T Consensus         2 ~~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~   81 (188)
T COG0693           2 MKKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEY   81 (188)
T ss_pred             CceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhh
Confidence            679999999999999999999999999999999999974 35566665 6667778888887779999999999556666


Q ss_pred             ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCC-CCCCceeecCcchhccCCC------CccccC-----cEEEeCC
Q 012037          162 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG-LLRRKQITCHPAFTDKLPT------FWAVKS-----NIHVSGE  229 (472)
Q Consensus       162 l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aG-lL~g~~~T~~~~~~~~l~~------~~~~~~-----~~v~Dg~  229 (472)
                      +..++.+++|++++++++|+|++||+|+. +|+.+| +++||++|+++...+...+      ..|++.     .+|.||+
T Consensus        82 ~~~~~~~~~~v~~~~~~~k~vaaIC~g~~-~L~~ag~ll~g~~~t~~~~~~~~~~~~~~~~ga~~vd~~~~~~~vv~dg~  160 (188)
T COG0693          82 LRPDPDLLAFVRDFYANGKPVAAICHGPA-VLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVDAPLWTDEVVVDGN  160 (188)
T ss_pred             ccCcHHHHHHHHHHHHcCCEEEEEChhHH-HHhccccccCCceEeecCchHHHHHhHHHhcCceEeccccCcCCEEEECC
Confidence            77779999999999999999999999766 899999 9999999999998887665      678887     8999999


Q ss_pred             -EEeCCCCCChHHHHHHHHHHHhCch
Q 012037          230 -VTTSRGPGTSFEFALCLVEQLFGES  254 (472)
Q Consensus       230 -iiTa~g~~~~~dlal~li~~~~g~~  254 (472)
                       ++|+.++.++.+|+..+++++.+..
T Consensus       161 ~lvt~~~p~~~~~~~~~~~~~l~~~~  186 (188)
T COG0693         161 ALVTGRNPASAPAFALELLKALGGAE  186 (188)
T ss_pred             eEEEcCCcccHHHHHHHHHHHHhccc
Confidence             9999999999999999999988764

>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31)

Probab=99.91  E-value=6.9e-24  Score=200.99  Aligned_cols=159  Identities=16%  Similarity=0.225  Sum_probs=135.2

Q ss_pred             eCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceec-----------------CCCcEEeecCCcccc------CCCcc
Q 012037          294 IANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVA-----------------SQGVKIIADKSISDA------AESVY  350 (472)
Q Consensus       294 ~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s-----------------~~G~~v~~d~~l~~~------~~~~~  350 (472)
                      +..||++.|+..|+++|+++||+|+++|++|+ .+..                 ..+.++..+..++++      +.++|
T Consensus        19 ~~tG~~~~El~~p~~~l~~aG~~V~~aS~~g~-~~~~d~~s~~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dY   97 (232)
T cd03148          19 FSTGNHPVEMLLPLYHLHAAGFDFDVATLSGL-PVKFEYWAMPHEDEAVMPFFEKHKSKLRNPKKLADVVASLNADDSEY   97 (232)
T ss_pred             cCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCC-cCccCccccccccHHHHHHHHHHHHHhcCCCCHHHhhhhccCChhhc
Confidence            46899999999999999999999999999886 3321                 234457778888887      45799


Q ss_pred             cEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCC------CCCceeccChhhHhhhh-------
Q 012037          351 DLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGL------LKAKKATAHPSVIGKLT-------  417 (472)
Q Consensus       351 D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGl------L~g~~~T~~~~~~~~l~-------  417 (472)
                      |+||+|||+++...+..++.+.+++++++++||+|++||+|+++|..+++      ++||++|+++..++...       
T Consensus        98 Dav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a~l~~g~~ll~Gk~vT~f~~~eE~~~~~~~~~~  177 (232)
T cd03148          98 AAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAARHGGGKNPLEGYSVCVFPDSLDEGANIEIGYM  177 (232)
T ss_pred             eEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhccCCCCCeeeCCcEEecCCCHHHHhhhhccccc
Confidence            99999999877788999999999999999999999999999999999999      99999999988766421       


Q ss_pred             -------------c--cee----cCCcEEECCCEEEcCChhhHHHHHHHHHHHhc
Q 012037          418 -------------N--EVV----NGTKVVVDGKVITSRGLANVIDFALAIVSKFF  453 (472)
Q Consensus       418 -------------~--~~~----~~~~vv~dg~iiTa~g~~~~~d~al~li~~~~  453 (472)
                                   +  ..+    .+..+|+|||+||++++.++..++.++|+.++
T Consensus       178 ~~~~pf~le~~L~~~Ga~~~~~~~~~~vv~Dg~LiTGqnP~Sa~~~a~~~~~~~~  232 (232)
T cd03148         178 PGHLTWLVGEELKKMGMNIINDDITGRVHKDRKLLTGDSPLASNALGKLAAQEML  232 (232)
T ss_pred             cCcccccHHHHHHHcCCEEECCCCCcCEEEeCCEEeCCCcHhHHHHHHHHHHHhC
Confidence                         1  112    24479999999999999999999999998763

Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.

>PRK04155 chaperone protein HchA; Provisional

Probab=99.91  E-value=6e-24  Score=206.47  Aligned_cols=167  Identities=19%  Similarity=0.305  Sum_probs=134.6

Q ss_pred             CcEEEEEeC--------------CCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceecc-----------------CCce
Q 012037           84 PKKVLVPVG--------------FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEAS-----------------SGTR  132 (472)
Q Consensus        84 ~~kV~ill~--------------~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~-----------------~G~~  132 (472)
                      .|||+|++.              .|+++.|+..++++|+++|++|+++|++++ ++...                 .+..
T Consensus        49 ~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G~-~~~~d~~s~~~~d~~v~~~~~~~~~~  127 (287)
T PRK04155         49 GKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSGN-PVKFEYWAMPHEDEAVMGFYEKYKSK  127 (287)
T ss_pred             CCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCCC-ccccccccccccchhHHHHHHHhhhh
Confidence            458999886              588999999999999999999999999875 43221                 1222


Q ss_pred             eeeCCCcCCC----C--CCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCC------CCC
Q 012037          133 LVADTSISNC----S--HQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG------LLR  200 (472)
Q Consensus       133 v~~d~~~~~~----~--~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aG------lL~  200 (472)
                      +..+..++++    .  ..+||+||||||++....++.++.+.++|+++++++|+|++||+|++ +|..+|      +++
T Consensus       128 l~~~~~l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa-~Ll~a~~~~g~~ll~  206 (287)
T PRK04155        128 FKQPKKLADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPA-ALLAAGVDHGDNPLN  206 (287)
T ss_pred             ccCceeHHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHH-HHHHcCCcCCCcccC
Confidence            2333333322    2  56899999999987778899999999999999999999999999987 566688      999


Q ss_pred             CceeecCcchh-------------------ccCCC--Ccccc----CcEEEeCCEEeCCCCCChHHHHHHHHHHHhC
Q 012037          201 RKQITCHPAFT-------------------DKLPT--FWAVK----SNIHVSGEVTTSRGPGTSFEFALCLVEQLFG  252 (472)
Q Consensus       201 g~~~T~~~~~~-------------------~~l~~--~~~~~----~~~v~Dg~iiTa~g~~~~~dlal~li~~~~g  252 (472)
                      ||++|+|+...                   +.|++  +.+++    ..+|+|||+||++++.++.+|++.+++.+..
T Consensus       207 GkkvT~fp~~~e~~~~~~~~~~~~~~~~~e~~L~~~Ga~~~~~~~~~~VvvDg~LITGq~P~sa~~fa~~~~~~Ll~  283 (287)
T PRK04155        207 GYSICAFPDALDKQTPEIGYMPGHLTWLFGEELKKMGVNIVNDDITGRVHKDRKLLTGDSPLASNALGKLAAQELLA  283 (287)
T ss_pred             CCEEeeCCCHHHhhccccccccccccchHHHHHHHcCCEEEcCCCCCCEEEeCCEEeCCChhHHHHHHHHHHHHHHH
Confidence            99999998763                   33443  45666    5799999999999999999999999998763

>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity

Probab=99.90  E-value=6.1e-24  Score=188.37  Aligned_cols=137  Identities=32%  Similarity=0.497  Sum_probs=122.1

Q ss_pred             EEEEEeeCCCcceeccCC---ceeeeCCCcCCCCCCcccEEEEcCCccccccccCC-hHHHHHHHHHHhcCCeEEEEchh
Q 012037          113 QVTMASVEPQLEVEASSG---TRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDC-EILKKITSKQAEEKRLYGAICAA  188 (472)
Q Consensus       113 ~v~~vs~~~g~~v~~~~G---~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~-~~~~~~l~~~~~~~k~I~aic~g  188 (472)
                      +|+++++..++.+++++|   .++.+|.++++++..+||+|+||||......+..+ +.+.+||+++++++|+|++||+|
T Consensus         1 ~V~~vs~~~~~~v~~~~g~~~~~v~~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g   80 (147)
T PF01965_consen    1 KVDVVSPGDGKEVTGSHGSFGIKVTPDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHG   80 (147)
T ss_dssp             EEEEEESSSSSEEEBTTSHHHHEEESSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTC
T ss_pred             CEEEEECCCCCeEEcCCCcCCEEEECCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCC
Confidence            588999998878999999   99999999999999999999999997667788855 99999999999999999999998


Q ss_pred             hHHhhhcCCCCCCceeecCcchhccCCC--Ccccc--CcEEEeC-CEEeCCCCCChHHHHHHHHHHH
Q 012037          189 PAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVK--SNIHVSG-EVTTSRGPGTSFEFALCLVEQL  250 (472)
Q Consensus       189 ~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~--~~~v~Dg-~iiTa~g~~~~~dlal~li~~~  250 (472)
                      + .+|+++|+|+||++|+|+...+.++.  ..|.+  ..+++|| |+||++|+.++.+|++++++.+
T Consensus        81 ~-~~L~~~gll~g~~~T~~~~~~~~~~~~g~~~~~~~~~~vvD~~nlIT~~~~~~~~~fa~~ive~L  146 (147)
T PF01965_consen   81 P-AVLAAAGLLKGKKVTSYPNDEEDLENAGANYVDQDDPVVVDGGNLITGRGPGSAIEFALAIVEAL  146 (147)
T ss_dssp             H-HHHHHTTTTTTSEEC-SGGGHHHHHHTTTEEBSCSSSEEEETTTEEEESSGGGHHHHHHHHHHHH
T ss_pred             c-chhhccCccCCceeecCccHHHHHHHCCCEEEecCCCeEEECCeEEECCChhhHHHHHHHHHHHc
Confidence            6 58999999999999999999886555  66766  7899999 9999999999999999999986

Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....

>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31)

Probab=99.89  E-value=2.7e-23  Score=196.94  Aligned_cols=159  Identities=14%  Similarity=0.240  Sum_probs=132.6

Q ss_pred             EeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceec-----------------cCCceeeeCCCcCCC------CCCc
Q 012037           90 PVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEA-----------------SSGTRLVADTSISNC------SHQV  146 (472)
Q Consensus        90 ll~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~-----------------~~G~~v~~d~~~~~~------~~~~  146 (472)
                      .+..||++.|+..|+++|+++|++|+++|++++ .+..                 ..+..+..+..++++      +..+
T Consensus        18 ~~~tG~~~~El~~p~~~l~~aG~~V~~aS~~g~-~~~~d~~s~~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~~~~~~d   96 (232)
T cd03148          18 LFSTGNHPVEMLLPLYHLHAAGFDFDVATLSGL-PVKFEYWAMPHEDEAVMPFFEKHKSKLRNPKKLADVVASLNADDSE   96 (232)
T ss_pred             CcCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCC-cCccCccccccccHHHHHHHHHHHHHhcCCCCHHHhhhhccCChhh
Confidence            346899999999999999999999999999876 3321                 133446777788776      3468


Q ss_pred             ccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCC------CCCceeecCcchhccCC-----
Q 012037          147 FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGL------LRRKQITCHPAFTDKLP-----  215 (472)
Q Consensus       147 ~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGl------L~g~~~T~~~~~~~~l~-----  215 (472)
                      ||+|++|||++.+..+++++.+.++++++|+++|+|++||+|++ +|..+++      ++||++|+++...+...     
T Consensus        97 YDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~-~L~~a~l~~g~~ll~Gk~vT~f~~~eE~~~~~~~~  175 (232)
T cd03148          97 YAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPA-AFLAARHGGGKNPLEGYSVCVFPDSLDEGANIEIG  175 (232)
T ss_pred             ceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHH-HHHhccCCCCCeeeCCcEEecCCCHHHHhhhhccc
Confidence            99999999987788899999999999999999999999999987 5667888      99999999998776421     


Q ss_pred             ---C--------------Ccccc----CcEEEeCCEEeCCCCCChHHHHHHHHHHH
Q 012037          216 ---T--------------FWAVK----SNIHVSGEVTTSRGPGTSFEFALCLVEQL  250 (472)
Q Consensus       216 ---~--------------~~~~~----~~~v~Dg~iiTa~g~~~~~dlal~li~~~  250 (472)
                         +              +.+..    ..+|+|||+||++++.++..++..+|+.+
T Consensus       176 ~~~~~~pf~le~~L~~~Ga~~~~~~~~~~vv~Dg~LiTGqnP~Sa~~~a~~~~~~~  231 (232)
T cd03148         176 YMPGHLTWLVGEELKKMGMNIINDDITGRVHKDRKLLTGDSPLASNALGKLAAQEM  231 (232)
T ss_pred             cccCcccccHHHHHHHcCCEEECCCCCcCEEEeCCEEeCCCcHhHHHHHHHHHHHh
Confidence               1              22222    36999999999999999999999999875

Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.

>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional

Probab=99.88  E-value=7.1e-22  Score=185.05  Aligned_cols=151  Identities=24%  Similarity=0.340  Sum_probs=123.7

Q ss_pred             CCEEEEEeC-----CCCCHHHHHHHHHHHHhCCCeEEEEEecCCc----------ceecCCCcEEeec-------CCccc
Q 012037          287 MPRVLIPIA-----NGSEEIEIVTIVDILRRAKVDVVVASVERST----------QIVASQGVKIIAD-------KSISD  344 (472)
Q Consensus       287 ~~~V~il~~-----~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~----------~v~s~~G~~v~~d-------~~l~~  344 (472)
                      |+||+|++.     +||++.|+..|++.|+++|++++++|++++.          .+....++.+..+       ..+++
T Consensus         1 ~kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   80 (217)
T PRK11780          1 MKKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAE   80 (217)
T ss_pred             CCEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhH
Confidence            468999997     9999999999999999999999999998751          1233344545443       57888


Q ss_pred             cCCCcccEEEEcCCCcch----------hcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccC--hhh
Q 012037          345 AAESVYDLIILPGGVAGA----------ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAH--PSV  412 (472)
Q Consensus       345 ~~~~~~D~livpGG~~~~----------~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~--~~~  412 (472)
                      ++.++||+||+|||++..          +.++.++.+++++++|+++||+|++||+|+++|+.+.. +||++|++  +..
T Consensus        81 v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~~-~gr~~T~~~~~~~  159 (217)
T PRK11780         81 ADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKILG-AGVKLTIGNDEDT  159 (217)
T ss_pred             CChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHhc-cCcEEEecCChhh
Confidence            888899999999997543          23456899999999999999999999999999998732 89999999  888


Q ss_pred             Hhhhhc--ceecCC---cEEEC--CCEEEcCCh
Q 012037          413 IGKLTN--EVVNGT---KVVVD--GKVITSRGL  438 (472)
Q Consensus       413 ~~~l~~--~~~~~~---~vv~d--g~iiTa~g~  438 (472)
                      ..++++  ..+.+.   .+|+|  ||+|||...
T Consensus       160 ~~~~~~aGa~~vd~~~~~vvvD~~~~lvt~~~~  192 (217)
T PRK11780        160 AAAIEKMGGEHVDCPVDDIVVDEENKVVTTPAY  192 (217)
T ss_pred             HHHHHHCCCEEEcCCCCeEEEECCCCEEeCCcc
Confidence            888887  455443   67777  789999953

>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional

Probab=99.87  E-value=6.3e-22  Score=185.43  Aligned_cols=153  Identities=22%  Similarity=0.218  Sum_probs=124.4

Q ss_pred             CcEEEEEeC-----CCCcHHHHHHHHHHHHhCCCEEEEEeeCCCc----------ceeccCCceeeeC-------CCcCC
Q 012037           84 PKKVLVPVG-----FGTEEMEAVIIVDVLRRAGAQVTMASVEPQL----------EVEASSGTRLVAD-------TSISN  141 (472)
Q Consensus        84 ~~kV~ill~-----~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~----------~v~~~~G~~v~~d-------~~~~~  141 (472)
                      |+||+|++.     +||++.|+..|++.|+++|++++++|++++.          .+....+..+..+       ..+++
T Consensus         1 ~kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   80 (217)
T PRK11780          1 MKKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAE   80 (217)
T ss_pred             CCEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhH
Confidence            479999998     9999999999999999999999999998752          1233334444443       57778


Q ss_pred             CCCCcccEEEEcCCccccc----------cccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecC--cc
Q 012037          142 CSHQVFDLIALPGGMPGSV----------RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCH--PA  209 (472)
Q Consensus       142 ~~~~~~D~vivpGG~~~~~----------~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~--~~  209 (472)
                      ++..+||+|++|||++...          .++.++.+.++++++++++|+|++||+|++ +|+.+.. +||++|++  +.
T Consensus        81 v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~-iL~~~~~-~gr~~T~~~~~~  158 (217)
T PRK11780         81 ADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPA-MLPKILG-AGVKLTIGNDED  158 (217)
T ss_pred             CChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHH-HHHHHhc-cCcEEEecCChh
Confidence            8888999999999975433          345589999999999999999999999987 5666522 89999999  98


Q ss_pred             hhccCCC--CccccC---cEEEe--CCEEeCCCCCC
Q 012037          210 FTDKLPT--FWAVKS---NIHVS--GEVTTSRGPGT  238 (472)
Q Consensus       210 ~~~~l~~--~~~~~~---~~v~D--g~iiTa~g~~~  238 (472)
                      ...++++  +.|++.   .+|+|  ||+||+.....
T Consensus       159 ~~~~~~~aGa~~vd~~~~~vvvD~~~~lvt~~~~~~  194 (217)
T PRK11780        159 TAAAIEKMGGEHVDCPVDDIVVDEENKVVTTPAYML  194 (217)
T ss_pred             hHHHHHHCCCEEEcCCCCeEEEECCCCEEeCCcccC
Confidence            8888888  788875   68888  78999986543

>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases

Probab=99.86  E-value=1.1e-20  Score=166.38  Aligned_cols=113  Identities=25%  Similarity=0.367  Sum_probs=104.8

Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc
Q 012037          288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK  367 (472)
Q Consensus       288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~  367 (472)
                      +||+|+++|||++.|+..++|+|+.+||+++++|++++ +++++.|+++.++.++++....+||+|+||||......+..
T Consensus         2 ~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~-~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~~   80 (142)
T cd03132           2 RKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLG-GVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAP   80 (142)
T ss_pred             CEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcC-ceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHcc
Confidence            68999999999999999999999999999999999998 99999999999999999876668999999999743444567


Q ss_pred             cHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCC
Q 012037          368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLL  401 (472)
Q Consensus       368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL  401 (472)
                      ++.+++||+++++++++|+++|+|+++||++|+|
T Consensus        81 ~~~l~~~l~~~~~~~~~I~aic~G~~~La~aGll  114 (142)
T cd03132          81 SGRALHFVTEAFKHGKPIGAVGEGSDLLEAAGIP  114 (142)
T ss_pred             ChHHHHHHHHHHhcCCeEEEcCchHHHHHHcCCC
Confidence            8999999999999999999999999999999997

Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C

>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1

Probab=99.86  E-value=6.8e-21  Score=177.30  Aligned_cols=152  Identities=24%  Similarity=0.319  Sum_probs=121.0

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCeEEEEEecCCc----------ceecCCCcEEeec-------CCccccCCCcccEEEEcC
Q 012037          295 ANGSEEIEIVTIVDILRRAKVDVVVASVERST----------QIVASQGVKIIAD-------KSISDAAESVYDLIILPG  357 (472)
Q Consensus       295 ~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~----------~v~s~~G~~v~~d-------~~l~~~~~~~~D~livpG  357 (472)
                      +|||++.|+..|+++|+++|++++++|++++.          .+....++.+.++       ..+++++.++||+|+|||
T Consensus        11 ~dg~E~~El~~p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPG   90 (213)
T cd03133          11 YDGSEIHEAVLTLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPG   90 (213)
T ss_pred             CCCccHHHHHHHHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECC
Confidence            58999999999999999999999999997641          2333556666665       678888778999999999


Q ss_pred             CCcchhcc----------cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccCh--hhHhhhhc--ceecC
Q 012037          358 GVAGAERL----------QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHP--SVIGKLTN--EVVNG  423 (472)
Q Consensus       358 G~~~~~~~----------~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~--~~~~~l~~--~~~~~  423 (472)
                      |......+          +.++.+++++++|+++||+|++||+|+++|+.++. +||++|+|+  ..++++++  ..+.+
T Consensus        91 G~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~-kGr~vT~~~~~~~~~~l~~aGa~~~d  169 (213)
T cd03133          91 GFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG-EGVEVTIGNDAGTAAAIEKMGAEHVN  169 (213)
T ss_pred             CCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc-cCCeEEccCCHHHHHHHHHCCCEEEe
Confidence            97543333          34889999999999999999999999999999766 999999999  88888875  44443


Q ss_pred             ---CcEEEC--CCEEEcCCh---hhHHHHHHH
Q 012037          424 ---TKVVVD--GKVITSRGL---ANVIDFALA  447 (472)
Q Consensus       424 ---~~vv~d--g~iiTa~g~---~~~~d~al~  447 (472)
                         ..+++|  ||+|||+..   .+..+.++.
T Consensus       170 ~~~~~vvvd~dg~lITs~~~~~~~~~~~~~~~  201 (213)
T cd03133         170 CPVEEIVVDEKNKVVTTPAYMLADSIHEIADG  201 (213)
T ss_pred             CCCCeEEEECCCCEEeCccccCCCCHHHHHHh
Confidence               356665  799999954   334444443

Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.

>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1

Probab=99.85  E-value=4.2e-21  Score=178.68  Aligned_cols=145  Identities=21%  Similarity=0.217  Sum_probs=117.5

Q ss_pred             CCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCc----------ceeccCCceeeeC-------CCcCCCCCCcccEEEEcC
Q 012037           92 GFGTEEMEAVIIVDVLRRAGAQVTMASVEPQL----------EVEASSGTRLVAD-------TSISNCSHQVFDLIALPG  154 (472)
Q Consensus        92 ~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~----------~v~~~~G~~v~~d-------~~~~~~~~~~~D~vivpG  154 (472)
                      +|||++.|+..++++|+++|++++++|+++|.          .+....+..+..+       .++++++..+||+|+|||
T Consensus        11 ~dg~E~~El~~p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPG   90 (213)
T cd03133          11 YDGSEIHEAVLTLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPG   90 (213)
T ss_pred             CCCccHHHHHHHHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECC
Confidence            68999999999999999999999999997641          2333455556555       677887778999999999


Q ss_pred             Cccccccc----------cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCc--chhccCCC--Cccc
Q 012037          155 GMPGSVRL----------RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHP--AFTDKLPT--FWAV  220 (472)
Q Consensus       155 G~~~~~~l----------~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~--~~~~~l~~--~~~~  220 (472)
                      |+.....+          +.++.++++++++++++|+|++||+|++ +|+.++. +||++|+|+  ...+.+++  +.|+
T Consensus        91 G~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~-~L~~~~~-kGr~vT~~~~~~~~~~l~~aGa~~~  168 (213)
T cd03133          91 GFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPA-LAAKILG-EGVEVTIGNDAGTAAAIEKMGAEHV  168 (213)
T ss_pred             CCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHH-HHHHHhc-cCCeEEccCCHHHHHHHHHCCCEEE
Confidence            96544333          3488999999999999999999999887 6777655 999999999  88888876  6777


Q ss_pred             cC---cEEEe--CCEEeCCCCCC
Q 012037          221 KS---NIHVS--GEVTTSRGPGT  238 (472)
Q Consensus       221 ~~---~~v~D--g~iiTa~g~~~  238 (472)
                      +.   .+|+|  ||+|||.....
T Consensus       169 d~~~~~vvvd~dg~lITs~~~~~  191 (213)
T cd03133         169 NCPVEEIVVDEKNKVVTTPAYML  191 (213)
T ss_pred             eCCCCeEEEECCCCEEeCccccC
Confidence            53   67776  78999997654

Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.

>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases

Probab=99.84  E-value=3.3e-20  Score=163.42  Aligned_cols=139  Identities=21%  Similarity=0.259  Sum_probs=118.3

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR  163 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~  163 (472)
                      ++||+|++++||+..|+..++++|+.+|++++++|++++ +++++.|.++.++.++++.+..+||+|+||||......+.
T Consensus         1 ~~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~-~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~   79 (142)
T cd03132           1 GRKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLG-GVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALA   79 (142)
T ss_pred             CCEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcC-ceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHc
Confidence            478999999999999999999999999999999999987 9999999999999999988767899999999954444456


Q ss_pred             CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCCCccccCcEEEeCCEEeCCCCCChHHHH
Q 012037          164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFA  243 (472)
Q Consensus       164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~v~Dg~iiTa~g~~~~~dla  243 (472)
                      .++.+.+||+++++++|+|+++|+| .++|+++|+|-                         .|.+++|+++....  +.
T Consensus        80 ~~~~l~~~l~~~~~~~~~I~aic~G-~~~La~aGll~-------------------------~~~gv~~~~~~~~~--~~  131 (142)
T cd03132          80 PSGRALHFVTEAFKHGKPIGAVGEG-SDLLEAAGIPL-------------------------EDPGVVTADDVKDV--FT  131 (142)
T ss_pred             cChHHHHHHHHHHhcCCeEEEcCch-HHHHHHcCCCC-------------------------CCCcEEEecCcchH--HH
Confidence            7899999999999999999999996 66999999972                         24678888754432  45


Q ss_pred             HHHHHHHh
Q 012037          244 LCLVEQLF  251 (472)
Q Consensus       244 l~li~~~~  251 (472)
                      ..+|+.+.
T Consensus       132 ~~~~~~~~  139 (142)
T cd03132         132 DRFIDALA  139 (142)
T ss_pred             HHHHHHHH
Confidence            66666543

Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C

>PRK11249 katE hydroperoxidase II; Provisional

Probab=99.79  E-value=1.7e-18  Score=185.35  Aligned_cols=135  Identities=17%  Similarity=0.183  Sum_probs=123.9

Q ss_pred             CCCCCCCCCCCCCccccccCCCCCCCCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCc
Q 012037           52 NSAPTRRRSSKPTKNLTLTTPTTPEATNSAVPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGT  131 (472)
Q Consensus        52 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~  131 (472)
                      ++.+.||+||            +..+....+.+|||+||++||++..++..++++|+++|++++++++++| +|+++.|.
T Consensus       577 ~~~~~s~als------------~~~~~~~~~~gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G-~V~~s~G~  643 (752)
T PRK11249        577 NGLKKDPALS------------LYAIPDGDIKGRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMG-EVTADDGT  643 (752)
T ss_pred             CCCCCCcchh------------ccCCCCCCccccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCC-eEECCCCC
Confidence            3688899998            6666677889999999999999999999999999999999999999987 99999999


Q ss_pred             eeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCC
Q 012037          132 RLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLR  200 (472)
Q Consensus       132 ~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~  200 (472)
                      .+.+|.++.+.++.+||+|+||||..+...+..++.+++||+++|+|+|+|+++|+| ..+|+++||.+
T Consensus       644 ~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG-~~LLaaAGL~~  711 (752)
T PRK11249        644 VLPIAATFAGAPSLTFDAVIVPGGKANIADLADNGDARYYLLEAYKHLKPIALAGDA-RKLKAALKLPD  711 (752)
T ss_pred             EEecceeeccCCccCCCEEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCcc-HHHHHhcCCCC
Confidence            999999999998889999999999656777888999999999999999999999996 66999999954

>PRK11249 katE hydroperoxidase II; Provisional

Probab=99.62  E-value=6.4e-15  Score=158.09  Aligned_cols=116  Identities=16%  Similarity=0.225  Sum_probs=108.6

Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037          286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  365 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~  365 (472)
                      ..+||+||++||++..|+..+.++|+.+|.+++++|++++ +|+++.|..|.+|.++++.....||+|+||||..+...+
T Consensus       596 ~gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G-~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L  674 (752)
T PRK11249        596 KGRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMG-EVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADL  674 (752)
T ss_pred             cccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCC-eEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHH
Confidence            4589999999999999999999999999999999999998 999999999999999999876789999999996556778


Q ss_pred             cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCC
Q 012037          366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLK  402 (472)
Q Consensus       366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~  402 (472)
                      ..++.+++||+++++++|+|+++|+|+.+|+++||.+
T Consensus       675 ~~d~~al~fL~eaykHgK~IAAiCaG~~LLaaAGL~~  711 (752)
T PRK11249        675 ADNGDARYYLLEAYKHLKPIALAGDARKLKAALKLPD  711 (752)
T ss_pred             hhCHHHHHHHHHHHHcCCEEEEeCccHHHHHhcCCCC
Confidence            8899999999999999999999999999999999965

>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.13  E-value=5.1e-10  Score=105.60  Aligned_cols=95  Identities=21%  Similarity=0.301  Sum_probs=75.8

Q ss_pred             CEEEEEeCCCCC-HHHHHHHHHHHH-hCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh--
Q 012037          288 PRVLIPIANGSE-EIEIVTIVDILR-RAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE--  363 (472)
Q Consensus       288 ~~V~il~~~g~~-~~e~~~~~d~l~-~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~--  363 (472)
                      +||+|+.++|.+ +.|+   .+.|+ .+|+++.++..+..                  ++  ++||+|+||||....+  
T Consensus         1 ~~v~Vl~~~G~n~~~d~---~~a~~~~~G~~~~~v~~~~~------------------~l--~~~D~lvipGG~~~~d~l   57 (219)
T PRK03619          1 MKVAVIVFPGSNCDRDM---ARALRDLLGAEPEYVWHKET------------------DL--DGVDAVVLPGGFSYGDYL   57 (219)
T ss_pred             CEEEEEecCCcChHHHH---HHHHHhcCCCeEEEEecCcC------------------CC--CCCCEEEECCCCchhhhh
Confidence            489999999987 5666   77787 78998887765321                  22  5789999999963222  


Q ss_pred             ---cccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCce
Q 012037          364 ---RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKK  405 (472)
Q Consensus       364 ---~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~  405 (472)
                         ....++.+++||+++.++++++++||+|..+|+++|||+|+-
T Consensus        58 ~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l  102 (219)
T PRK03619         58 RCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGAL  102 (219)
T ss_pred             ccchhhhchHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeE
Confidence               223457899999999999999999999999999999999863

>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase

Probab=99.12  E-value=3.2e-10  Score=108.44  Aligned_cols=128  Identities=17%  Similarity=0.150  Sum_probs=90.9

Q ss_pred             EEEEeCCCC-CHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc--
Q 012037          290 VLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ--  366 (472)
Q Consensus       290 V~il~~~g~-~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~--  366 (472)
                      |+|+.+||. ++.|   .+++|+++|+++.+++.+..  +..             +.+.++||.|+||||....+.+.  
T Consensus         1 v~vl~~pG~n~~~~---~~~al~~aG~~v~~v~~~~~--~~~-------------~~~l~~~d~liipGG~~~~d~l~~~   62 (238)
T cd01740           1 VAVLRFPGSNCDRD---MAYAFELAGFEAEDVWHNDL--LAG-------------RKDLDDYDGVVLPGGFSYGDYLRAG   62 (238)
T ss_pred             CEEEEcCCcCCHHH---HHHHHHHcCCCEEEEeccCC--ccc-------------cCCHhhCCEEEECCCCCcccccccc
Confidence            689999997 6666   67888899999998877541  111             11126799999999963233322  


Q ss_pred             ---ccHH-HHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc-ceecCCcEEECCCEEEcC
Q 012037          367 ---KSRI-LKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN-EVVNGTKVVVDGKVITSR  436 (472)
Q Consensus       367 ---~~~~-l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~-~~~~~~~vv~dg~iiTa~  436 (472)
                         .... +.++|+++.+++++|.+||.|..+|+++|+|.|+. +.++........ ..+.+..++.|++++|+.
T Consensus        63 ~~~~~~~~~~~~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~-~~~~~~~~~~~~~~~~v~~~v~~~~si~t~~  136 (238)
T cd01740          63 AIAAASPLLMEEVKEFAERGGLVLGICNGFQILVELGLLPGAL-IRNKGLKFICRWQNRFVTLRVENNDSPFTKG  136 (238)
T ss_pred             cccccChhHHHHHHHHHhCCCeEEEECcHHHHHHHcCCCcccc-ccCCCCceeccccCceEEEEEcCCCCceecC
Confidence               1223 88999999999999999999999999999999976 555443322221 123445566788888876

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site

>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase

Probab=99.07  E-value=9.1e-10  Score=105.33  Aligned_cols=128  Identities=19%  Similarity=0.119  Sum_probs=92.5

Q ss_pred             EEEEeCCCCc-HHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc--
Q 012037           87 VLVPVGFGTE-EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR--  163 (472)
Q Consensus        87 V~ill~~g~~-~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~--  163 (472)
                      |+||.++|.. +.|   .+++|+++|+++.++....  .+..             .....+||+|+||||....+.+.  
T Consensus         1 v~vl~~pG~n~~~~---~~~al~~aG~~v~~v~~~~--~~~~-------------~~~l~~~d~liipGG~~~~d~l~~~   62 (238)
T cd01740           1 VAVLRFPGSNCDRD---MAYAFELAGFEAEDVWHND--LLAG-------------RKDLDDYDGVVLPGGFSYGDYLRAG   62 (238)
T ss_pred             CEEEEcCCcCCHHH---HHHHHHHcCCCEEEEeccC--Cccc-------------cCCHhhCCEEEECCCCCcccccccc
Confidence            6899999974 444   6899999999999988763  1111             11223799999999953222222  


Q ss_pred             ---CChH-HHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC-CccccCcEEEeCCEEeCC
Q 012037          164 ---DCEI-LKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-FWAVKSNIHVSGEVTTSR  234 (472)
Q Consensus       164 ---~~~~-~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~-~~~~~~~~v~Dg~iiTa~  234 (472)
                         .... +.++|+++++++++|++||.|.+ +|+++|+|.|+. |.++........ ..|++..++.|++++|+.
T Consensus        63 ~~~~~~~~~~~~l~~~~~~g~pvlGIC~G~Q-lL~~~gll~g~~-~~~~~~~~~~~~~~~~v~~~v~~~~si~t~~  136 (238)
T cd01740          63 AIAAASPLLMEEVKEFAERGGLVLGICNGFQ-ILVELGLLPGAL-IRNKGLKFICRWQNRFVTLRVENNDSPFTKG  136 (238)
T ss_pred             cccccChhHHHHHHHHHhCCCeEEEECcHHH-HHHHcCCCcccc-ccCCCCceeccccCceEEEEEcCCCCceecC
Confidence               1223 88999999999999999999765 899999999976 666654443332 355666677889999986

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site

>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.03  E-value=1.7e-09  Score=104.25  Aligned_cols=99  Identities=26%  Similarity=0.376  Sum_probs=74.9

Q ss_pred             CCEEEEEeCCCCC-HHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037          287 MPRVLIPIANGSE-EIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  365 (472)
Q Consensus       287 ~~~V~il~~~g~~-~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~  365 (472)
                      ++||+|++++|++ +.|+   +++|+++|+++.++.....            .+ .-.++  ++||+|+||||....+.+
T Consensus         3 ~~kvaVl~~pG~n~d~e~---~~Al~~aG~~v~~v~~~~~------------~~-~~~~l--~~~DgLvipGGfs~gD~l   64 (261)
T PRK01175          3 SIRVAVLRMEGTNCEDET---VKAFRRLGVEPEYVHINDL------------AA-ERKSV--SDYDCLVIPGGFSAGDYI   64 (261)
T ss_pred             CCEEEEEeCCCCCCHHHH---HHHHHHCCCcEEEEeeccc------------cc-cccch--hhCCEEEECCCCCccccc
Confidence            4799999999996 6655   6899999999998876531            01 11122  679999999995322322


Q ss_pred             ccc--------HHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCC
Q 012037          366 QKS--------RILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKA  403 (472)
Q Consensus       366 ~~~--------~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g  403 (472)
                      ...        +.+.+.|+++.+++++|.+||.|..+|+++|+|-|
T Consensus        65 ~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~GlLpg  110 (261)
T PRK01175         65 RAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVELGLLPG  110 (261)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHCCCCCC
Confidence            211        23457889999999999999999999999999987

>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=98.95  E-value=6.3e-09  Score=98.23  Aligned_cols=95  Identities=24%  Similarity=0.241  Sum_probs=74.1

Q ss_pred             cEEEEEeCCCCc-HHHHHHHHHHHH-hCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc--
Q 012037           85 KKVLVPVGFGTE-EMEAVIIVDVLR-RAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV--  160 (472)
Q Consensus        85 ~kV~ill~~g~~-~~e~~~~~~~l~-~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~--  160 (472)
                      +||+||.++|.. +.|+   +++|+ .+|+++.++..+..                  +.+  +||+|+||||.....  
T Consensus         1 ~~v~Vl~~~G~n~~~d~---~~a~~~~~G~~~~~v~~~~~------------------~l~--~~D~lvipGG~~~~d~l   57 (219)
T PRK03619          1 MKVAVIVFPGSNCDRDM---ARALRDLLGAEPEYVWHKET------------------DLD--GVDAVVLPGGFSYGDYL   57 (219)
T ss_pred             CEEEEEecCCcChHHHH---HHHHHhcCCCeEEEEecCcC------------------CCC--CCCEEEECCCCchhhhh
Confidence            489999999987 4544   88888 88999888865421                  222  699999999953221  


Q ss_pred             ---cccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCce
Q 012037          161 ---RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ  203 (472)
Q Consensus       161 ---~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~  203 (472)
                         ....+..+.+||+++++++++|++||+| ..+|+++|||+|+-
T Consensus        58 ~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G-~qlLa~~GLL~g~l  102 (219)
T PRK03619         58 RCGAIAAFSPIMKAVKEFAEKGKPVLGICNG-FQILTEAGLLPGAL  102 (219)
T ss_pred             ccchhhhchHHHHHHHHHHHCCCEEEEECHH-HHHHHHcCCCCCeE
Confidence               2234578899999999999999999996 56899999999853

>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=98.91  E-value=7.9e-09  Score=99.62  Aligned_cols=101  Identities=24%  Similarity=0.283  Sum_probs=73.7

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR  163 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~  163 (472)
                      ++||+|++++|+....  .++++|+++|+++.++.....            .+.   .....+||+|+||||....+.+.
T Consensus         3 ~~kvaVl~~pG~n~d~--e~~~Al~~aG~~v~~v~~~~~------------~~~---~~~l~~~DgLvipGGfs~gD~l~   65 (261)
T PRK01175          3 SIRVAVLRMEGTNCED--ETVKAFRRLGVEPEYVHINDL------------AAE---RKSVSDYDCLVIPGGFSAGDYIR   65 (261)
T ss_pred             CCEEEEEeCCCCCCHH--HHHHHHHHCCCcEEEEeeccc------------ccc---ccchhhCCEEEECCCCCcccccc
Confidence            5799999999997332  447999999999999886531            000   01123799999999953223232


Q ss_pred             CC--------hHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCc
Q 012037          164 DC--------EILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRK  202 (472)
Q Consensus       164 ~~--------~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~  202 (472)
                      ..        +.+.+.|+++.+++|+|.+||.|.+ +|+++|+|.|.
T Consensus        66 ~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~Q-lLa~~GlLpg~  111 (261)
T PRK01175         66 AGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQ-VLVELGLLPGF  111 (261)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHH-HHHHCCCCCCC
Confidence            22        2344788999999999999999765 89999999873

>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I

Probab=98.87  E-value=2.5e-08  Score=94.73  Aligned_cols=94  Identities=23%  Similarity=0.313  Sum_probs=74.1

Q ss_pred             CEEEEEeCCCCC-HHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc--
Q 012037          288 PRVLIPIANGSE-EIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER--  364 (472)
Q Consensus       288 ~~V~il~~~g~~-~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~--  364 (472)
                      |||+|+.++|.+ +.|+.   +.|+.+|+++.++.....               .   +  +++|+|+||||....+.  
T Consensus         1 ~~v~Vl~~~G~n~~~~~~---~al~~~G~~~~~i~~~~~---------------~---l--~~~d~lilpGG~~~~d~~~   57 (227)
T TIGR01737         1 MKVAVIRFPGTNCDRDTV---YALRLLGVDAEIVWYEDG---------------S---L--PDYDGVVLPGGFSYGDYLR   57 (227)
T ss_pred             CeEEEEeCCCcCcHHHHH---HHHHHCCCeEEEEecCCC---------------C---C--CCCCEEEECCCCccccccc
Confidence            589999999875 67774   888889999888854321               1   2  46899999998632221  


Q ss_pred             ---ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCc
Q 012037          365 ---LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAK  404 (472)
Q Consensus       365 ---~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~  404 (472)
                         +..+..+.++|+++.+++++|.+||.|..+|+++|+|.|.
T Consensus        58 ~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~  100 (227)
T TIGR01737        58 AGAIAAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGA  100 (227)
T ss_pred             ccchhcchHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCc
Confidence               2335668899999999999999999999999999999984

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.

>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.79  E-value=5.5e-08  Score=79.71  Aligned_cols=92  Identities=30%  Similarity=0.445  Sum_probs=77.2

Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccH
Q 012037          290 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSR  369 (472)
Q Consensus       290 V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~  369 (472)
                      |++++++++...++..+.+.|+.+++++++++.+++ ...+           ..  ...+||++++|||.........+.
T Consensus         1 v~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~-----------~~--~~~~~d~lii~g~~~~~~~~~~~~   66 (115)
T cd01653           1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGG-PVES-----------DV--DLDDYDGLILPGGPGTPDDLARDE   66 (115)
T ss_pred             CEEEecCCCchhhhHHHHHHHHHCCCeEEEEcCCCC-ceec-----------cC--ChhccCEEEECCCCCchhhhccCH
Confidence            578899999999999999999999999999999986 4433           12  236899999999874333333478


Q ss_pred             HHHHHHHHHHHcCCeEEEEchhHHHH
Q 012037          370 ILKKLLKEQKVAGRIYGAVCSSPIVL  395 (472)
Q Consensus       370 ~l~~~L~~~~~~g~~v~aic~G~~lL  395 (472)
                      .+++|++++..++++++++|.|..+|
T Consensus        67 ~~~~~i~~~~~~~~~i~~~c~g~~~l   92 (115)
T cd01653          67 ALLALLREAAAAGKPILGICLGAQLL   92 (115)
T ss_pred             HHHHHHHHHHHcCCEEEEECchhHhH
Confidence            99999999999999999999999999

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende

>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.75  E-value=6.6e-08  Score=83.42  Aligned_cols=163  Identities=24%  Similarity=0.304  Sum_probs=105.8

Q ss_pred             CcEEEEEe-----CCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCccee---ccCCce--------ee-------eCCCcC
Q 012037           84 PKKVLVPV-----GFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVE---ASSGTR--------LV-------ADTSIS  140 (472)
Q Consensus        84 ~~kV~ill-----~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~---~~~G~~--------v~-------~d~~~~  140 (472)
                      ||||++++     +||.+..|-...+-.+.+.|.++....|+.. ...   --.|..        ++       --..+.
T Consensus         1 mKkv~ViLSGCGV~DGaEIHEsVltllai~r~GA~~~cFAP~~~-Q~hViNHlTGE~m~EtRNVLvEsARIaRG~i~~l~   79 (217)
T COG3155           1 MKKVGVILSGCGVYDGAEIHESVLTLLAISRSGAQAVCFAPDKQ-QVHVINHLTGEAMPETRNVLVESARIARGEIRPLA   79 (217)
T ss_pred             CceeEEEeecCcccchHHHHHHHHHHHHHHhcCceeEEecCCch-hhhhhhhccccccchhhhHHHHHHHHhhccccchh
Confidence            58999987     6788888888888889999999999999863 211   111111        11       012445


Q ss_pred             CCCCCcccEEEEcCCccccccccC----------ChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceee--cCc
Q 012037          141 NCSHQVFDLIALPGGMPGSVRLRD----------CEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQIT--CHP  208 (472)
Q Consensus       141 ~~~~~~~D~vivpGG~~~~~~l~~----------~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T--~~~  208 (472)
                      +.++++||++++|||++...++.+          ++++....+.+++.||+++-+|-+++++----|.  +.+.|  ...
T Consensus        80 ~a~~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~--~~~~TIGnD~  157 (217)
T COG3155          80 QADAEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGF--PLRLTIGNDI  157 (217)
T ss_pred             hcCHHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCC--ceeEEecCCc
Confidence            556779999999999876655433          5899999999999999999999998843222332  22333  233


Q ss_pred             chhccCCC--Ccccc---CcEEE--eCCEEeCCCCCChHHHHHHHHHHHhCc
Q 012037          209 AFTDKLPT--FWAVK---SNIHV--SGEVTTSRGPGTSFEFALCLVEQLFGE  253 (472)
Q Consensus       209 ~~~~~l~~--~~~~~---~~~v~--Dg~iiTa~g~~~~~dlal~li~~~~g~  253 (472)
                      .-.+.+++  ...++   +.+|.  +++++|.    .+.-++..+-+.-.|-
T Consensus       158 dTa~a~~~mG~eHv~cPvd~iV~D~~~KvvtT----PAYMLA~~IaeAAsGI  205 (217)
T COG3155         158 DTAEALEEMGAEHVPCPVDDIVVDEDNKVVTT----PAYMLAQNIAEAASGI  205 (217)
T ss_pred             cHHHHHHHhCcccCCCCccceeecCCCceecC----hHHHHHHHHHHHHhhH
Confidence            44445544  22222   33444  4678884    3455566665555444

>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I

Probab=98.66  E-value=2.4e-07  Score=87.99  Aligned_cols=94  Identities=24%  Similarity=0.240  Sum_probs=72.1

Q ss_pred             cEEEEEeCCCCc-HHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc---
Q 012037           85 KKVLVPVGFGTE-EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV---  160 (472)
Q Consensus        85 ~kV~ill~~g~~-~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~---  160 (472)
                      +||+|+.++|.. +.++   .++|+++|+++.++.....                  +.  .+||+|+||||....+   
T Consensus         1 ~~v~Vl~~~G~n~~~~~---~~al~~~G~~~~~i~~~~~------------------~l--~~~d~lilpGG~~~~d~~~   57 (227)
T TIGR01737         1 MKVAVIRFPGTNCDRDT---VYALRLLGVDAEIVWYEDG------------------SL--PDYDGVVLPGGFSYGDYLR   57 (227)
T ss_pred             CeEEEEeCCCcCcHHHH---HHHHHHCCCeEEEEecCCC------------------CC--CCCCEEEECCCCccccccc
Confidence            489999999875 4555   5888899999988854321                  01  2699999999953221   


Q ss_pred             --cccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCc
Q 012037          161 --RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRK  202 (472)
Q Consensus       161 --~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~  202 (472)
                        .+..+..+.++|+++.+.+++|.+||.| ..+|+++|+|+|.
T Consensus        58 ~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G-~QlLa~~GlL~G~  100 (227)
T TIGR01737        58 AGAIAAASPIMQEVREFAEKGVPVLGICNG-FQILVEAGLLPGA  100 (227)
T ss_pred             ccchhcchHHHHHHHHHHHcCCEEEEECHH-HHHHHHcCCCCCc
Confidence              1233567889999999999999999996 5589999999883

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.

>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.62  E-value=3.4e-07  Score=74.87  Aligned_cols=92  Identities=32%  Similarity=0.348  Sum_probs=74.2

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCCh
Q 012037           87 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCE  166 (472)
Q Consensus        87 V~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~  166 (472)
                      |++++.+++...++..+.+.|+++++++++++...+ ....             .....+||+|++|||.........+.
T Consensus         1 v~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~-------------~~~~~~~d~lii~g~~~~~~~~~~~~   66 (115)
T cd01653           1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGG-PVES-------------DVDLDDYDGLILPGGPGTPDDLARDE   66 (115)
T ss_pred             CEEEecCCCchhhhHHHHHHHHHCCCeEEEEcCCCC-ceec-------------cCChhccCEEEECCCCCchhhhccCH
Confidence            578999999999999999999999999999999976 4433             12234799999999853333232468


Q ss_pred             HHHHHHHHHHhcCCeEEEEchhhHHhh
Q 012037          167 ILKKITSKQAEEKRLYGAICAAPAVTL  193 (472)
Q Consensus       167 ~~~~~l~~~~~~~k~I~aic~g~~~lL  193 (472)
                      .+++|++++.+++++++++|.| .+++
T Consensus        67 ~~~~~i~~~~~~~~~i~~~c~g-~~~l   92 (115)
T cd01653          67 ALLALLREAAAAGKPILGICLG-AQLL   92 (115)
T ss_pred             HHHHHHHHHHHcCCEEEEECch-hHhH
Confidence            9999999999999999999996 4445

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende

>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=98.51  E-value=1.1e-06  Score=81.12  Aligned_cols=95  Identities=19%  Similarity=0.295  Sum_probs=74.3

Q ss_pred             CCEEEEEeCCCC-CHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037          287 MPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  365 (472)
Q Consensus       287 ~~~V~il~~~g~-~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~  365 (472)
                      ++||+|+.+||. ++.|....++   ++|++...+-.+..               .+.    .+||+|++|||.--.+.+
T Consensus         2 ~~kvaVi~fpGtN~d~d~~~A~~---~aG~~~~~V~~~d~---------------~~~----~~~d~vv~pGGFSyGDyL   59 (231)
T COG0047           2 RPKVAVLRFPGTNCDYDMAAAFE---RAGFEAEDVWHSDL---------------LLG----RDFDGVVLPGGFSYGDYL   59 (231)
T ss_pred             CceEEEEEcCCcCchHHHHHHHH---HcCCCceEEEeeec---------------ccC----CCccEEEEcCCCCccccc
Confidence            589999999997 7888876655   78888877755432               111    169999999996322322


Q ss_pred             -----cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCC
Q 012037          366 -----QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKA  403 (472)
Q Consensus       366 -----~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g  403 (472)
                           ..-..+++-++++.++|+++.+||+|-.+|.++|||-|
T Consensus        60 r~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQiL~e~gLlPG  102 (231)
T COG0047          60 RAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQILSEAGLLPG  102 (231)
T ss_pred             CcchHHhhHHHHHHHHHHHHCCCeEEEEcchhHHHHHcCcCCc
Confidence                 23367888999999999999999999999999999999

>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=98.49  E-value=7.5e-07  Score=82.07  Aligned_cols=96  Identities=25%  Similarity=0.182  Sum_probs=73.1

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR  163 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~  163 (472)
                      ++||+|+.++|..-.  ...+.+|+++|+++..|..+.. .              +..    +||+|++|||+.--+.|+
T Consensus         2 ~~kvaVi~fpGtN~d--~d~~~A~~~aG~~~~~V~~~d~-~--------------~~~----~~d~vv~pGGFSyGDyLr   60 (231)
T COG0047           2 RPKVAVLRFPGTNCD--YDMAAAFERAGFEAEDVWHSDL-L--------------LGR----DFDGVVLPGGFSYGDYLR   60 (231)
T ss_pred             CceEEEEEcCCcCch--HHHHHHHHHcCCCceEEEeeec-c--------------cCC----CccEEEEcCCCCcccccC
Confidence            579999999997532  2446777899999988887642 1              000    699999999973323232


Q ss_pred             -----CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCC
Q 012037          164 -----DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRR  201 (472)
Q Consensus       164 -----~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g  201 (472)
                           .-..+++-+++++++++++.+||+|-+ +|.++|||.|
T Consensus        61 ~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQ-iL~e~gLlPG  102 (231)
T COG0047          61 AGAIAAIAPVMDEVREFAEKGKPVLGICNGFQ-ILSEAGLLPG  102 (231)
T ss_pred             cchHHhhHHHHHHHHHHHHCCCeEEEEcchhH-HHHHcCcCCc
Confidence                 236788889999999999999999766 7889999999

>PRK13527 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.46  E-value=9e-07  Score=82.47  Aligned_cols=92  Identities=26%  Similarity=0.313  Sum_probs=74.4

Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch-hccc
Q 012037          288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA-ERLQ  366 (472)
Q Consensus       288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~-~~~~  366 (472)
                      |||+|++.+|+.......+.+.|+..|++++++..+.                 .+++  .+||.||+|||.... ..+.
T Consensus         1 ~~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~-----------------~~~l--~~~d~iii~GG~~~~~~~~~   61 (200)
T PRK13527          1 MKIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRR-----------------PGDL--PDCDALIIPGGESTTIGRLM   61 (200)
T ss_pred             CEEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCC-----------------hHHh--ccCCEEEECCCcHHHHHHHH
Confidence            4899999999999999999999999998888766542                 1233  579999999996322 1222


Q ss_pred             ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          367 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       367 ~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      .+..+.++|+++.+++++|.+||.|..+|+++
T Consensus        62 ~~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~   93 (200)
T PRK13527         62 KREGILDEIKEKIEEGLPILGTCAGLILLAKE   93 (200)
T ss_pred             hhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence            44467999999999999999999999999987

>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.42  E-value=6.4e-07  Score=69.93  Aligned_cols=92  Identities=33%  Similarity=0.478  Sum_probs=72.7

Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccH
Q 012037          290 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSR  369 (472)
Q Consensus       290 V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~  369 (472)
                      |+++.+++....++....+.+++.++++++++.... ....             .....++|.+++|||.........+.
T Consensus         1 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------~~~~~~~~~lii~g~~~~~~~~~~~~   66 (92)
T cd03128           1 VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGG-PVES-------------DVDLDDYDGLILPGGPGTPDDLAWDE   66 (92)
T ss_pred             CEEEecCCcEEEeeecHHHHHHhCCCEEEEEeCCCC-cccc-------------cCCcccCCEEEECCCCcchhhhccCH
Confidence            467778888777899999999999999999999886 3222             12236899999999874333322468


Q ss_pred             HHHHHHHHHHHcCCeEEEEchhHHHH
Q 012037          370 ILKKLLKEQKVAGRIYGAVCSSPIVL  395 (472)
Q Consensus       370 ~l~~~L~~~~~~g~~v~aic~G~~lL  395 (472)
                      .+++|++++..++++++++|.|+.++
T Consensus        67 ~~~~~~~~~~~~~~~i~~~~~g~~~~   92 (92)
T cd03128          67 ALLALLREAAAAGKPVLGICLGAQLL   92 (92)
T ss_pred             HHHHHHHHHHHcCCEEEEEecccccC
Confidence            99999999999999999999998753

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin

>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.36  E-value=1.8e-06  Score=67.35  Aligned_cols=89  Identities=30%  Similarity=0.336  Sum_probs=70.2

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCCh
Q 012037           87 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCE  166 (472)
Q Consensus        87 V~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~  166 (472)
                      |+++..++....++....+.|++.++.+++++.... ....             ......||++++|||.........+.
T Consensus         1 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------~~~~~~~~~lii~g~~~~~~~~~~~~   66 (92)
T cd03128           1 VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGG-PVES-------------DVDLDDYDGLILPGGPGTPDDLAWDE   66 (92)
T ss_pred             CEEEecCCcEEEeeecHHHHHHhCCCEEEEEeCCCC-cccc-------------cCCcccCCEEEECCCCcchhhhccCH
Confidence            467888888888889999999999999999998865 3222             12334799999999953333222468


Q ss_pred             HHHHHHHHHHhcCCeEEEEchhh
Q 012037          167 ILKKITSKQAEEKRLYGAICAAP  189 (472)
Q Consensus       167 ~~~~~l~~~~~~~k~I~aic~g~  189 (472)
                      ...+|++++++++++|+++|.|.
T Consensus        67 ~~~~~~~~~~~~~~~i~~~~~g~   89 (92)
T cd03128          67 ALLALLREAAAAGKPVLGICLGA   89 (92)
T ss_pred             HHHHHHHHHHHcCCEEEEEeccc
Confidence            99999999999999999999963

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin

>PRK13527 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.35  E-value=1.5e-06  Score=80.96  Aligned_cols=92  Identities=21%  Similarity=0.169  Sum_probs=71.8

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc-ccc
Q 012037           85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV-RLR  163 (472)
Q Consensus        85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~-~l~  163 (472)
                      +||+||+..|+.......+.+.|+..|++++++..+..                 ++.+  +||+|++|||..... .+.
T Consensus         1 ~~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~-----------------~~l~--~~d~iii~GG~~~~~~~~~   61 (200)
T PRK13527          1 MKIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRP-----------------GDLP--DCDALIIPGGESTTIGRLM   61 (200)
T ss_pred             CEEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCCh-----------------HHhc--cCCEEEECCCcHHHHHHHH
Confidence            48999999999999999999999999988887765421                 1222  699999999943221 222


Q ss_pred             CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      .+..+.++|+++++++++|.+||.|.. +|+.+
T Consensus        62 ~~~~~~~~i~~~~~~~~pilGIC~G~Q-ll~~~   93 (200)
T PRK13527         62 KREGILDEIKEKIEEGLPILGTCAGLI-LLAKE   93 (200)
T ss_pred             hhccHHHHHHHHHHCCCeEEEECHHHH-HHHhh
Confidence            445679999999999999999999765 67776

>PRK13526 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.35  E-value=1.2e-06  Score=79.19  Aligned_cols=89  Identities=20%  Similarity=0.291  Sum_probs=66.3

Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh--cc
Q 012037          288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE--RL  365 (472)
Q Consensus       288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~--~~  365 (472)
                      +||+|+..+|....    -...|++.|+++.++..                   .+++  ++||.|++|||. ...  .+
T Consensus         3 ~~igVLalqG~~~E----h~~al~~lG~~v~~v~~-------------------~~~l--~~~D~LILPGG~-~t~~~~l   56 (179)
T PRK13526          3 QKVGVLAIQGGYQK----HADMFKSLGVEVKLVKF-------------------NNDF--DSIDRLVIPGGE-STTLLNL   56 (179)
T ss_pred             cEEEEEECCccHHH----HHHHHHHcCCcEEEECC-------------------HHHH--hCCCEEEECCCh-HHHHHHH
Confidence            78999999985443    56777788877655431                   1233  578999999995 333  45


Q ss_pred             cccHHHHHHHHHHHHcCCeEEEEchhHHHHHH----cCCCCC
Q 012037          366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK----HGLLKA  403 (472)
Q Consensus       366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~----aGlL~g  403 (472)
                      .++..+.+.|+++.+ ++++.+||.|..+|++    .|+++|
T Consensus        57 l~~~~l~~~Ik~~~~-~kpilGICaG~qlL~~~s~~Lg~idg   97 (179)
T PRK13526         57 LNKHQIFDKLYNFCS-SKPVFGTCAGSIILSKGEGYLNLLDL   97 (179)
T ss_pred             hhhcCcHHHHHHHHc-CCcEEEEcHHHHHHHccCCCCCCccE
Confidence            556679999999875 7899999999999999    455554

>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.30  E-value=1.6e-06  Score=74.94  Aligned_cols=163  Identities=25%  Similarity=0.295  Sum_probs=106.3

Q ss_pred             CCEEEEE-----eCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcc--e---ecC-----CCcEEe-------ecCCccc
Q 012037          287 MPRVLIP-----IANGSEEIEIVTIVDILRRAKVDVVVASVERSTQ--I---VAS-----QGVKII-------ADKSISD  344 (472)
Q Consensus       287 ~~~V~il-----~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~--v---~s~-----~G~~v~-------~d~~l~~  344 (472)
                      |+||+++     +|||.+.-|-...+-.+.+.|.++..+.++..+.  +   ++.     .++-+.       --..+.+
T Consensus         1 mKkv~ViLSGCGV~DGaEIHEsVltllai~r~GA~~~cFAP~~~Q~hViNHlTGE~m~EtRNVLvEsARIaRG~i~~l~~   80 (217)
T COG3155           1 MKKVGVILSGCGVYDGAEIHESVLTLLAISRSGAQAVCFAPDKQQVHVINHLTGEAMPETRNVLVESARIARGEIRPLAQ   80 (217)
T ss_pred             CceeEEEeecCcccchHHHHHHHHHHHHHHhcCceeEEecCCchhhhhhhhccccccchhhhHHHHHHHHhhccccchhh
Confidence            5788888     4799999999999999999999999999987410  1   111     011110       0123555


Q ss_pred             cCCCcccEEEEcCCCcchhcc----------cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccC--hhh
Q 012037          345 AAESVYDLIILPGGVAGAERL----------QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAH--PSV  412 (472)
Q Consensus       345 ~~~~~~D~livpGG~~~~~~~----------~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~--~~~  412 (472)
                      .++++||++|+|||.+....+          .-++++..+.+.+++.||+++-||.++.+|.+- +=.+-+.|.-  ...
T Consensus        81 a~~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki-~g~~~~~TIGnD~dT  159 (217)
T COG3155          81 ADAEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKI-FGFPLRLTIGNDIDT  159 (217)
T ss_pred             cCHHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHH-cCCceeEEecCCccH
Confidence            667899999999998655443          347899999999999999999999999999873 1123344432  334


Q ss_pred             Hhhhhc---c---eecCCcEEE-CCCEEEcCChhhHHHHHHHHHHHhcC
Q 012037          413 IGKLTN---E---VVNGTKVVV-DGKVITSRGLANVIDFALAIVSKFFG  454 (472)
Q Consensus       413 ~~~l~~---~---~~~~~~vv~-dg~iiTa~g~~~~~d~al~li~~~~g  454 (472)
                      .+.+++   .   -..+..+++ +++++|..    +.-++-.|-+.--|
T Consensus       160 a~a~~~mG~eHv~cPvd~iV~D~~~KvvtTP----AYMLA~~IaeAAsG  204 (217)
T COG3155         160 AEALEEMGAEHVPCPVDDIVVDEDNKVVTTP----AYMLAQNIAEAASG  204 (217)
T ss_pred             HHHHHHhCcccCCCCccceeecCCCceecCh----HHHHHHHHHHHHhh
Confidence            444544   1   223333333 56788865    33344444444444

>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2

Probab=98.28  E-value=2.3e-06  Score=78.52  Aligned_cols=85  Identities=20%  Similarity=0.225  Sum_probs=66.3

Q ss_pred             EEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch-hcccc
Q 012037          289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA-ERLQK  367 (472)
Q Consensus       289 ~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~-~~~~~  367 (472)
                      ||+|+..+|-...    ..+.|++.|+++++++...                   ++  +++|.|+||||.... ..+..
T Consensus         1 ~igvl~~qg~~~e----~~~~l~~~g~~~~~v~~~~-------------------~l--~~~d~liipGG~~~~~~~l~~   55 (184)
T TIGR03800         1 KIGVLALQGAVRE----HARALEALGVEGVEVKRPE-------------------QL--DEIDGLIIPGGESTTLSRLLD   55 (184)
T ss_pred             CEEEEEccCCHHH----HHHHHHHCCCEEEEECChH-------------------Hh--ccCCEEEECCCCHHHHHHHHH
Confidence            5899999885444    5589999999988775421                   23  568999999996322 12334


Q ss_pred             cHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      +..+.++|+++.++++++.+||.|..+|++.
T Consensus        56 ~~~l~~~i~~~~~~g~pilGIC~G~qlL~~~   86 (184)
T TIGR03800        56 KYGMFEPLRNFILSGLPVFGTCAGLIMLAKE   86 (184)
T ss_pred             hccHHHHHHHHHHcCCcEEEECHHHHHHHhh
Confidence            5568899999999999999999999999988

Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.

>PRK13526 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.22  E-value=2.5e-06  Score=77.08  Aligned_cols=83  Identities=18%  Similarity=0.242  Sum_probs=62.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc--cc
Q 012037           85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV--RL  162 (472)
Q Consensus        85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~--~l  162 (472)
                      .||+||...|....    -..+|++.|+++.++...                   ++..  +||.|++||| ....  .+
T Consensus         3 ~~igVLalqG~~~E----h~~al~~lG~~v~~v~~~-------------------~~l~--~~D~LILPGG-~~t~~~~l   56 (179)
T PRK13526          3 QKVGVLAIQGGYQK----HADMFKSLGVEVKLVKFN-------------------NDFD--SIDRLVIPGG-ESTTLLNL   56 (179)
T ss_pred             cEEEEEECCccHHH----HHHHHHHcCCcEEEECCH-------------------HHHh--CCCEEEECCC-hHHHHHHH
Confidence            68999999995444    578888888876555422                   1122  6999999999 4444  45


Q ss_pred             cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhc
Q 012037          163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLP  195 (472)
Q Consensus       163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~  195 (472)
                      ..+..+.+.|+++.+ +|++++||.|.. +|++
T Consensus        57 l~~~~l~~~Ik~~~~-~kpilGICaG~q-lL~~   87 (179)
T PRK13526         57 LNKHQIFDKLYNFCS-SKPVFGTCAGSI-ILSK   87 (179)
T ss_pred             hhhcCcHHHHHHHHc-CCcEEEEcHHHH-HHHc
Confidence            566679999999885 789999999865 6877

>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2

Probab=98.17  E-value=3.7e-06  Score=77.15  Aligned_cols=85  Identities=18%  Similarity=0.050  Sum_probs=64.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc-ccccC
Q 012037           86 KVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS-VRLRD  164 (472)
Q Consensus        86 kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~-~~l~~  164 (472)
                      ||+||...|-...    .++.|++.|+++.++++..                   +.+  +||+++||||.... ..+..
T Consensus         1 ~igvl~~qg~~~e----~~~~l~~~g~~~~~v~~~~-------------------~l~--~~d~liipGG~~~~~~~l~~   55 (184)
T TIGR03800         1 KIGVLALQGAVRE----HARALEALGVEGVEVKRPE-------------------QLD--EIDGLIIPGGESTTLSRLLD   55 (184)
T ss_pred             CEEEEEccCCHHH----HHHHHHHCCCEEEEECChH-------------------Hhc--cCCEEEECCCCHHHHHHHHH
Confidence            6899999985443    5699999999988886521                   122  69999999995322 12344


Q ss_pred             ChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          165 CEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       165 ~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      +..+.++|+++++++++|.+||.|.. +|++.
T Consensus        56 ~~~l~~~i~~~~~~g~pilGIC~G~q-lL~~~   86 (184)
T TIGR03800        56 KYGMFEPLRNFILSGLPVFGTCAGLI-MLAKE   86 (184)
T ss_pred             hccHHHHHHHHHHcCCcEEEECHHHH-HHHhh
Confidence            56788999999999999999999755 78877

Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.

>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A

Probab=98.11  E-value=9.1e-06  Score=78.29  Aligned_cols=98  Identities=19%  Similarity=0.307  Sum_probs=67.4

Q ss_pred             CEEEEEeCCCC-CHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc-
Q 012037          288 PRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL-  365 (472)
Q Consensus       288 ~~V~il~~~g~-~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~-  365 (472)
                      +||+|+.++|. ++.|+   +.+|+.+|++++.+..+.  ...             .+....+||+|++|||....+.+ 
T Consensus         2 pkV~Vl~~pGtNce~e~---~~A~~~aG~~~~~v~~~d--l~~-------------~~~~l~~~~~lvipGGFS~gD~l~   63 (259)
T PF13507_consen    2 PKVAVLRFPGTNCERET---AAAFENAGFEPEIVHIND--LLS-------------GESDLDDFDGLVIPGGFSYGDYLR   63 (259)
T ss_dssp             -EEEEEE-TTEEEHHHH---HHHHHCTT-EEEEEECCH--HHT-------------TS--GCC-SEEEE-EE-GGGGTTS
T ss_pred             CEEEEEECCCCCCHHHH---HHHHHHcCCCceEEEEEe--ccc-------------ccCchhhCcEEEECCccCccccch
Confidence            68999999996 66666   456778999999886542  000             01123789999999986433332 


Q ss_pred             ---------cccHHHHHHHHHHHHc-CCeEEEEchhHHHHHHcCCCCC
Q 012037          366 ---------QKSRILKKLLKEQKVA-GRIYGAVCSSPIVLHKHGLLKA  403 (472)
Q Consensus       366 ---------~~~~~l~~~L~~~~~~-g~~v~aic~G~~lLA~aGlL~g  403 (472)
                               ..+..+++.|++|.++ ++.+.+||+|-.+|.++|||.|
T Consensus        64 sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~~~Gllp~  111 (259)
T PF13507_consen   64 SGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQILVELGLLPG  111 (259)
T ss_dssp             TTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHHHCCCCCSTT
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhHHHHHhCcCCC
Confidence                     2235568889999988 9999999999999999999998

>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase

Probab=98.08  E-value=1.1e-05  Score=74.98  Aligned_cols=77  Identities=19%  Similarity=0.228  Sum_probs=60.0

Q ss_pred             HHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcc--hhcccccHHHHHHHHHHHHc
Q 012037          304 VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG--AERLQKSRILKKLLKEQKVA  381 (472)
Q Consensus       304 ~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~--~~~~~~~~~l~~~L~~~~~~  381 (472)
                      .--.+.|+++|+++.++++..+                 +++  .++|+||+|||...  ...+.++..+.+.|+++.++
T Consensus        14 ~e~~~~l~~~G~~v~~~s~~~~-----------------~~l--~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~   74 (198)
T cd03130          14 PENLELLEAAGAELVPFSPLKD-----------------EEL--PDADGLYLGGGYPELFAEELSANQSMRESIRAFAES   74 (198)
T ss_pred             HHHHHHHHHCCCEEEEECCCCC-----------------CCC--CCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHc
Confidence            3446788899999998876432                 122  34899999999632  24566667899999999999


Q ss_pred             CCeEEEEchhHHHHHHcC
Q 012037          382 GRIYGAVCSSPIVLHKHG  399 (472)
Q Consensus       382 g~~v~aic~G~~lLA~aG  399 (472)
                      |++|.+||.|..+|++.-
T Consensus        75 g~pilgICgG~qlL~~~~   92 (198)
T cd03130          75 GGPIYAECGGLMYLGESL   92 (198)
T ss_pred             CCCEEEEcccHHHHHHHh
Confidence            999999999999998753

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.

>PRK07053 glutamine amidotransferase; Provisional

Probab=98.03  E-value=4.1e-05  Score=73.05  Aligned_cols=96  Identities=19%  Similarity=0.170  Sum_probs=70.6

Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc-
Q 012037          286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER-  364 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~-  364 (472)
                      +|++|+|+-...++...  .+.+.|+..|++++++....+             +....+.  .+||.|||+||..+... 
T Consensus         1 ~m~~ilviqh~~~e~~g--~i~~~L~~~g~~~~v~~~~~~-------------~~~~~~~--~~~d~lii~Ggp~~~~d~   63 (234)
T PRK07053          1 MMKTAVAIRHVAFEDLG--SFEQVLGARGYRVRYVDVGVD-------------DLETLDA--LEPDLLVVLGGPIGVYDD   63 (234)
T ss_pred             CCceEEEEECCCCCCCh--HHHHHHHHCCCeEEEEecCCC-------------ccCCCCc--cCCCEEEECCCCCCCCCC
Confidence            57888888666555444  478999999999998876543             1111222  57999999998643322 


Q ss_pred             --ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          365 --LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       365 --~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                        ..--..++++|+++.+.++++.+||-|..+|+++
T Consensus        64 ~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a   99 (234)
T PRK07053         64 ELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARA   99 (234)
T ss_pred             CcCCcHHHHHHHHHHHHHCCCCEEEECccHHHHHHH
Confidence              1223578899999999999999999999999976

>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=98.01  E-value=2.7e-05  Score=72.57  Aligned_cols=87  Identities=21%  Similarity=0.231  Sum_probs=66.1

Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc
Q 012037          288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK  367 (472)
Q Consensus       288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~  367 (472)
                      +||+|+=+.+-+.   ....+.|+.+|+++.+++.                   ..++  ++||.|++|||....+.+..
T Consensus         1 ~~~~v~~~~~~~~---~~~~~~l~~~G~~~~~~~~-------------------~~~~--~~~d~iii~G~~~~~~~~~~   56 (200)
T PRK13143          1 MMIVIIDYGVGNL---RSVSKALERAGAEVVITSD-------------------PEEI--LDADGIVLPGVGAFGAAMEN   56 (200)
T ss_pred             CeEEEEECCCccH---HHHHHHHHHCCCeEEEECC-------------------HHHH--ccCCEEEECCCCCHHHHHHH
Confidence            5788888876655   4558889999999887731                   1233  57999999996422233444


Q ss_pred             cHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      .+.+.++|+++.++++++.+||.|..+|+++
T Consensus        57 ~~~~~~~i~~~~~~~~PilgIC~G~q~l~~~   87 (200)
T PRK13143         57 LSPLRDVILEAARSGKPFLGICLGMQLLFES   87 (200)
T ss_pred             HHHHHHHHHHHHHcCCCEEEECHHHHHHhhh
Confidence            5678899999999999999999999999985

>PRK08250 glutamine amidotransferase; Provisional

Probab=98.00  E-value=4.9e-05  Score=72.61  Aligned_cols=94  Identities=18%  Similarity=0.252  Sum_probs=68.8

Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc-cc
Q 012037          288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER-LQ  366 (472)
Q Consensus       288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~-~~  366 (472)
                      |||+|+....++..+..  .+.++.+|+++++.....+.        .+     ..+.  .+||+|||.||..+... ..
T Consensus         1 m~i~vi~h~~~e~~g~~--~~~~~~~g~~~~~~~~~~g~--------~~-----p~~~--~~~d~vii~GGp~~~~~~~~   63 (235)
T PRK08250          1 MRVHFIIHESFEAPGAY--LKWAENRGYDISYSRVYAGE--------AL-----PENA--DGFDLLIVMGGPQSPRTTRE   63 (235)
T ss_pred             CeEEEEecCCCCCchHH--HHHHHHCCCeEEEEEccCCC--------CC-----CCCc--cccCEEEECCCCCChhhccc
Confidence            57999998899888765  56668899888886554330        11     1122  57999999999643221 11


Q ss_pred             cc-----HHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          367 KS-----RILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       367 ~~-----~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      ..     ....+||+++.+.+++|.+||.|..+|+++
T Consensus        64 ~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a  100 (235)
T PRK08250         64 ECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEA  100 (235)
T ss_pred             cccccchHHHHHHHHHHHHcCCCEEEEChhHHHHHHH
Confidence            11     466899999999999999999999999976

>PRK13525 glutamine amidotransferase subunit PdxT; Provisional

Probab=97.99  E-value=2.8e-05  Score=71.69  Aligned_cols=87  Identities=23%  Similarity=0.268  Sum_probs=64.6

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch-hcc
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA-ERL  365 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~-~~~  365 (472)
                      ||+|+|+...|-...-    .+.|+.+++++.+++..                   +++  ++||.|++|||.... +.+
T Consensus         1 ~m~~~i~~~~g~~~~~----~~~l~~~g~~~~~~~~~-------------------~~l--~~~dgiii~GG~~~~~~~~   55 (189)
T PRK13525          1 MMKIGVLALQGAVREH----LAALEALGAEAVEVRRP-------------------EDL--DEIDGLILPGGESTTMGKL   55 (189)
T ss_pred             CCEEEEEEcccCHHHH----HHHHHHCCCEEEEeCCh-------------------hHh--ccCCEEEECCCChHHHHHH
Confidence            4689999888754422    46688888888776421                   123  579999999996322 123


Q ss_pred             cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      ..+..+.++++++.+++++|.+||.|..+|+++
T Consensus        56 ~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~   88 (189)
T PRK13525         56 LRDFGLLEPLREFIASGLPVFGTCAGMILLAKE   88 (189)
T ss_pred             HHhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence            344567899999999999999999999999983

>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A

Probab=97.97  E-value=2.9e-05  Score=74.85  Aligned_cols=100  Identities=22%  Similarity=0.225  Sum_probs=66.6

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccC
Q 012037           85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD  164 (472)
Q Consensus        85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~  164 (472)
                      .||+|+.++|..-..  ....+|+.+|++++.|..+.  ....             +....+||+|++|||+..-+.+..
T Consensus         2 pkV~Vl~~pGtNce~--e~~~A~~~aG~~~~~v~~~d--l~~~-------------~~~l~~~~~lvipGGFS~gD~l~s   64 (259)
T PF13507_consen    2 PKVAVLRFPGTNCER--ETAAAFENAGFEPEIVHIND--LLSG-------------ESDLDDFDGLVIPGGFSYGDYLRS   64 (259)
T ss_dssp             -EEEEEE-TTEEEHH--HHHHHHHCTT-EEEEEECCH--HHTT-------------S--GCC-SEEEE-EE-GGGGTTST
T ss_pred             CEEEEEECCCCCCHH--HHHHHHHHcCCCceEEEEEe--cccc-------------cCchhhCcEEEECCccCccccchH
Confidence            589999999976432  45789999999999887552  1100             012337999999999743333322


Q ss_pred             ----------ChHHHHHHHHHHhc-CCeEEEEchhhHHhhhcCCCCCCc
Q 012037          165 ----------CEILKKITSKQAEE-KRLYGAICAAPAVTLLPWGLLRRK  202 (472)
Q Consensus       165 ----------~~~~~~~l~~~~~~-~k~I~aic~g~~~lLa~aGlL~g~  202 (472)
                                ++.+.+-|++++++ ++.+.+||+| .-+|.++|||.+.
T Consensus        65 g~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNG-fQiL~~~Gllp~~  112 (259)
T PF13507_consen   65 GAIAAARLLFNSPLMDAIREFLERPGGFVLGICNG-FQILVELGLLPGG  112 (259)
T ss_dssp             THHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHH-HHHHCCCCCSTT-
T ss_pred             HHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchH-hHHHHHhCcCCCc
Confidence                      34567888999999 9999999996 5589999999883

>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase

Probab=97.85  E-value=4.6e-05  Score=70.87  Aligned_cols=78  Identities=21%  Similarity=0.108  Sum_probs=59.5

Q ss_pred             HHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc--cccccCChHHHHHHHHHHh
Q 012037          100 AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG--SVRLRDCEILKKITSKQAE  177 (472)
Q Consensus       100 ~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~--~~~l~~~~~~~~~l~~~~~  177 (472)
                      +..-++.|+++|+++.++++..+                 ++.+  ++|+|++|||...  ...+.++..+.+.|+++.+
T Consensus        13 y~e~~~~l~~~G~~v~~~s~~~~-----------------~~l~--~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~   73 (198)
T cd03130          13 YPENLELLEAAGAELVPFSPLKD-----------------EELP--DADGLYLGGGYPELFAEELSANQSMRESIRAFAE   73 (198)
T ss_pred             cHHHHHHHHHCCCEEEEECCCCC-----------------CCCC--CCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHH
Confidence            45567889999999999886422                 1233  4999999999533  3456666789999999999


Q ss_pred             cCCeEEEEchhhHHhhhcCC
Q 012037          178 EKRLYGAICAAPAVTLLPWG  197 (472)
Q Consensus       178 ~~k~I~aic~g~~~lLa~aG  197 (472)
                      ++++|.+||.|.+ +|.+..
T Consensus        74 ~g~pilgICgG~q-lL~~~~   92 (198)
T cd03130          74 SGGPIYAECGGLM-YLGESL   92 (198)
T ss_pred             cCCCEEEEcccHH-HHHHHh
Confidence            9999999999755 677653

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.

>PRK08250 glutamine amidotransferase; Provisional

Probab=97.83  E-value=0.00011  Score=70.20  Aligned_cols=94  Identities=14%  Similarity=0.198  Sum_probs=66.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc-cc
Q 012037           85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR-LR  163 (472)
Q Consensus        85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~-l~  163 (472)
                      |||.|+....++..+.  +.+.++++|+++++.....|.+        +      .. +..+||+|||.||..+... ..
T Consensus         1 m~i~vi~h~~~e~~g~--~~~~~~~~g~~~~~~~~~~g~~--------~------p~-~~~~~d~vii~GGp~~~~~~~~   63 (235)
T PRK08250          1 MRVHFIIHESFEAPGA--YLKWAENRGYDISYSRVYAGEA--------L------PE-NADGFDLLIVMGGPQSPRTTRE   63 (235)
T ss_pred             CeEEEEecCCCCCchH--HHHHHHHCCCeEEEEEccCCCC--------C------CC-CccccCEEEECCCCCChhhccc
Confidence            5799999888887765  4667788999988866553311        1      10 1237999999999433221 11


Q ss_pred             CC-----hHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          164 DC-----EILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       164 ~~-----~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ..     ....+||+++++++++|.+||.|.. +|+.+
T Consensus        64 ~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a  100 (235)
T PRK08250         64 ECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQ-LIGEA  100 (235)
T ss_pred             cccccchHHHHHHHHHHHHcCCCEEEEChhHH-HHHHH
Confidence            22     3668999999999999999999876 66665

>PRK13525 glutamine amidotransferase subunit PdxT; Provisional

Probab=97.82  E-value=6.2e-05  Score=69.46  Aligned_cols=87  Identities=18%  Similarity=0.061  Sum_probs=62.7

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc-ccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS-VRL  162 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~-~~l  162 (472)
                      ++||+|++..|-...-    ++.|+..|+++.++++.                   .+.+  +||+|++|||.... ..+
T Consensus         1 ~m~~~i~~~~g~~~~~----~~~l~~~g~~~~~~~~~-------------------~~l~--~~dgiii~GG~~~~~~~~   55 (189)
T PRK13525          1 MMKIGVLALQGAVREH----LAALEALGAEAVEVRRP-------------------EDLD--EIDGLILPGGESTTMGKL   55 (189)
T ss_pred             CCEEEEEEcccCHHHH----HHHHHHCCCEEEEeCCh-------------------hHhc--cCCEEEECCCChHHHHHH
Confidence            4689999998754332    46688899888777531                   1222  69999999995322 123


Q ss_pred             cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ..+..+.++++++++++++|.+||.|.. +|+.+
T Consensus        56 ~~~~~~~~~i~~~~~~g~PilGIC~G~Q-lL~~~   88 (189)
T PRK13525         56 LRDFGLLEPLREFIASGLPVFGTCAGMI-LLAKE   88 (189)
T ss_pred             HHhccHHHHHHHHHHCCCeEEEECHHHH-HHHhh
Confidence            3455677999999999999999999765 67763

>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex

Probab=97.78  E-value=7.6e-05  Score=71.23  Aligned_cols=87  Identities=23%  Similarity=0.280  Sum_probs=64.9

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcc-hhcc
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG-AERL  365 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~-~~~~  365 (472)
                      ||||+|+..+|-..    ...+.|+++|.++.+++..                   +++  .++|.||+|||... ...+
T Consensus         1 ~m~igVLa~qG~~~----e~~~aL~~lG~ev~~v~~~-------------------~~L--~~~DgLILPGGfs~~~~~L   55 (248)
T PLN02832          1 MMAIGVLALQGSFN----EHIAALRRLGVEAVEVRKP-------------------EQL--EGVSGLIIPGGESTTMAKL   55 (248)
T ss_pred             CcEEEEEeCCCchH----HHHHHHHHCCCcEEEeCCH-------------------HHh--ccCCEEEeCCCHHHHHHHH
Confidence            57999999998533    2358888888877655442                   234  56899999998632 2233


Q ss_pred             cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      .....+.+.|+++.++|+++.++|.|..+|++.
T Consensus        56 ~~~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~   88 (248)
T PLN02832         56 AERHNLFPALREFVKSGKPVWGTCAGLIFLAER   88 (248)
T ss_pred             HhhcchHHHHHHHHHcCCCEEEEChhHHHHHHH
Confidence            334468889999989999999999999999875

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=97.72  E-value=0.00015  Score=75.99  Aligned_cols=92  Identities=18%  Similarity=0.203  Sum_probs=69.9

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcc--hhc
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG--AER  364 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~--~~~  364 (472)
                      ..+|+|.-.+-|+.. +-.=++.|+..+.++.++++-..                 +++  .++|+|++|||...  ...
T Consensus       245 ~~~iava~d~af~f~-y~e~~~~L~~~g~~~~~~~~~~~-----------------~~l--~~~D~lilpGG~~~~~~~~  304 (451)
T PRK01077        245 GVRIAVARDAAFNFY-YPENLELLRAAGAELVFFSPLAD-----------------EAL--PDCDGLYLGGGYPELFAAE  304 (451)
T ss_pred             CceEEEEecCccccc-HHHHHHHHHHCCCEEEEeCCcCC-----------------CCC--CCCCEEEeCCCchhhHHHH
Confidence            368999988855544 22234778888899988876432                 122  46899999999743  355


Q ss_pred             ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          365 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      +..+..+.+.|+++.++|++|.++|.|..+|++.
T Consensus       305 l~~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~  338 (451)
T PRK01077        305 LAANTSMRASIRAAAAAGKPIYAECGGLMYLGES  338 (451)
T ss_pred             HhhCchhHHHHHHHHHcCCCEEEEcHHHHHHHhh
Confidence            6777889999999999999999999999998853

>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=97.72  E-value=0.00019  Score=66.09  Aligned_cols=92  Identities=24%  Similarity=0.369  Sum_probs=66.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHHHHhCC---CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch--h
Q 012037          289 RVLIPIANGSEEIEIVTIVDILRRAK---VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA--E  363 (472)
Q Consensus       289 ~V~il~~~g~~~~e~~~~~d~l~~a~---~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~--~  363 (472)
                      ||+|+..+....  .....+.|+.++   ++++++-...+             + ...+.  .+||.|+++||....  .
T Consensus         1 ~i~il~~~~~~~--~~~~~~~l~~~g~~~~~~~~~~~~~~-------------~-~~~~~--~~~dgvil~Gg~~~~~~~   62 (188)
T cd01741           1 RILILQHDTPEG--PGLFEDLLREAGAETIEIDVVDVYAG-------------E-LLPDL--DDYDGLVILGGPMSVDED   62 (188)
T ss_pred             CEEEEECCCCCC--cchHHHHHHhcCCCCceEEEEecCCC-------------C-CCCCc--ccCCEEEECCCCccCCcc
Confidence            467776665544  667778888887   67777665543             1 02233  679999999997433  1


Q ss_pred             cccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          364 RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       364 ~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      .....+.+.++|+.+.++++++.+||.|..+|+.+
T Consensus        63 ~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~l~~~   97 (188)
T cd01741          63 DYPWLKKLKELIRQALAAGKPVLGICLGHQLLARA   97 (188)
T ss_pred             CChHHHHHHHHHHHHHHCCCCEEEECccHHHHHHH
Confidence            12223678999999999999999999999999875

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ)

Probab=97.71  E-value=0.00013  Score=67.62  Aligned_cols=86  Identities=24%  Similarity=0.215  Sum_probs=62.4

Q ss_pred             EEEEeCCCC-CHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc-
Q 012037          290 VLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK-  367 (472)
Q Consensus       290 V~il~~~g~-~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~-  367 (472)
                      |+++.|++. +.   ..+...+...|++++++++..+                   .  .++|.|++|||......+.. 
T Consensus         1 ~~~~~y~~~gN~---~~l~~~~~~~G~~~~~~~~~~~-------------------~--~~~d~lilpGg~~~~~~~~~~   56 (194)
T cd01750           1 IAVIRYPDISNF---TDLDPLAREPGVDVRYVEVPEG-------------------L--GDADLIILPGSKDTIQDLAWL   56 (194)
T ss_pred             CEeecCCCccCH---HHHHHHHhcCCceEEEEeCCCC-------------------C--CCCCEEEECCCcchHHHHHHH
Confidence            467777643 44   3445666678889988876541                   2  56899999999632222222 


Q ss_pred             -cHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC
Q 012037          368 -SRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG  399 (472)
Q Consensus       368 -~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG  399 (472)
                       +..+.+.|+++.++|++|.+||.|..+|++.-
T Consensus        57 ~~~~~~~~i~~~~~~g~pvlgiC~G~qlL~~~~   89 (194)
T cd01750          57 RKRGLAEAIKNYARAGGPVLGICGGYQMLGKYI   89 (194)
T ss_pred             HHcCHHHHHHHHHHCCCcEEEECHHHHHhhhhc
Confidence             44688999999999999999999999998764

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.

>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.67  E-value=0.00012  Score=68.27  Aligned_cols=87  Identities=20%  Similarity=0.158  Sum_probs=62.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccC
Q 012037           85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD  164 (472)
Q Consensus        85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~  164 (472)
                      +||.|+=+.+-+.   ....+.|+++|+++.+++..                   .+.+  +||+|++|||......+..
T Consensus         1 ~~~~v~~~~~~~~---~~~~~~l~~~G~~~~~~~~~-------------------~~~~--~~d~iii~G~~~~~~~~~~   56 (200)
T PRK13143          1 MMIVIIDYGVGNL---RSVSKALERAGAEVVITSDP-------------------EEIL--DADGIVLPGVGAFGAAMEN   56 (200)
T ss_pred             CeEEEEECCCccH---HHHHHHHHHCCCeEEEECCH-------------------HHHc--cCCEEEECCCCCHHHHHHH
Confidence            4788887765443   55689999999998887410                   1122  6999999996322222334


Q ss_pred             ChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          165 CEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       165 ~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      .+.+.++|+++.++++++.+||.|.. +|+++
T Consensus        57 ~~~~~~~i~~~~~~~~PilgIC~G~q-~l~~~   87 (200)
T PRK13143         57 LSPLRDVILEAARSGKPFLGICLGMQ-LLFES   87 (200)
T ss_pred             HHHHHHHHHHHHHcCCCEEEECHHHH-HHhhh
Confidence            46788999999999999999999755 78875

>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex

Probab=97.59  E-value=0.00016  Score=68.99  Aligned_cols=87  Identities=16%  Similarity=0.118  Sum_probs=63.6

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc-cccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG-SVRL  162 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~-~~~l  162 (472)
                      |+||+||...|-.    ....++|++.|+++.+++..                   ++..  .+|.||+|||... ...+
T Consensus         1 ~m~igVLa~qG~~----~e~~~aL~~lG~ev~~v~~~-------------------~~L~--~~DgLILPGGfs~~~~~L   55 (248)
T PLN02832          1 MMAIGVLALQGSF----NEHIAALRRLGVEAVEVRKP-------------------EQLE--GVSGLIIPGGESTTMAKL   55 (248)
T ss_pred             CcEEEEEeCCCch----HHHHHHHHHCCCcEEEeCCH-------------------HHhc--cCCEEEeCCCHHHHHHHH
Confidence            4689999999853    33368888888887666542                   1233  6899999998632 2334


Q ss_pred             cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      .....+.+.|+++.+.|++|.++|.| ..+|++.
T Consensus        56 ~~~~gl~~~I~~~v~~g~PvLGiC~G-mqlLa~~   88 (248)
T PLN02832         56 AERHNLFPALREFVKSGKPVWGTCAG-LIFLAER   88 (248)
T ss_pred             HhhcchHHHHHHHHHcCCCEEEEChh-HHHHHHH
Confidence            44446888999998999999999996 4477776

>PRK07053 glutamine amidotransferase; Provisional

Probab=97.58  E-value=0.00072  Score=64.51  Aligned_cols=95  Identities=16%  Similarity=0.060  Sum_probs=66.6

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc-
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL-  162 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l-  162 (472)
                      |++|.|+--...+.  ...+.+.|++.|++++++....+ .        ..    ..+.  .+||+|||+||..+...- 
T Consensus         2 m~~ilviqh~~~e~--~g~i~~~L~~~g~~~~v~~~~~~-~--------~~----~~~~--~~~d~lii~Ggp~~~~d~~   64 (234)
T PRK07053          2 MKTAVAIRHVAFED--LGSFEQVLGARGYRVRYVDVGVD-D--------LE----TLDA--LEPDLLVVLGGPIGVYDDE   64 (234)
T ss_pred             CceEEEEECCCCCC--ChHHHHHHHHCCCeEEEEecCCC-c--------cC----CCCc--cCCCEEEECCCCCCCCCCC
Confidence            67887776655544  44579999999999998876543 1        10    1112  269999999984333221 


Q ss_pred             --cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          163 --RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       163 --~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                        .--..+.++|+++.+.++++.+||-|.. +|+++
T Consensus        65 ~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a   99 (234)
T PRK07053         65 LYPFLAPEIALLRQRLAAGLPTLGICLGAQ-LIARA   99 (234)
T ss_pred             cCCcHHHHHHHHHHHHHCCCCEEEECccHH-HHHHH
Confidence              1224788999999999999999999866 67765

>PRK06490 glutamine amidotransferase; Provisional

Probab=97.55  E-value=0.00067  Score=64.95  Aligned_cols=96  Identities=13%  Similarity=0.082  Sum_probs=70.5

Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc-
Q 012037          286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER-  364 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~-  364 (472)
                      .++||+|+.-.+++....  +.+.|+..|++++++.+..+             +...+++  ++||.+||.||...... 
T Consensus         6 ~~~~vlvi~h~~~~~~g~--l~~~l~~~g~~~~v~~~~~~-------------~~~p~~l--~~~dgvii~Ggp~~~~d~   68 (239)
T PRK06490          6 DKRPVLIVLHQERSTPGR--VGQLLQERGYPLDIRRPRLG-------------DPLPDTL--EDHAGAVIFGGPMSANDP   68 (239)
T ss_pred             CCceEEEEecCCCCCChH--HHHHHHHCCCceEEEeccCC-------------CCCCCcc--cccCEEEEECCCCCCCCC
Confidence            578999997777665554  68899999999988866543             1011233  57999999998743322 


Q ss_pred             ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          365 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      ..-...+++||+++.+.++++.+||-|..+|+++
T Consensus        69 ~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla~a  102 (239)
T PRK06490         69 DDFIRREIDWISVPLKENKPFLGICLGAQMLARH  102 (239)
T ss_pred             chHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHH
Confidence            1112457899999999999999999999999987

>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis

Probab=97.53  E-value=0.00024  Score=65.15  Aligned_cols=85  Identities=26%  Similarity=0.300  Sum_probs=63.0

Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh-ccccc
Q 012037          290 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-RLQKS  368 (472)
Q Consensus       290 V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~-~~~~~  368 (472)
                      |+|++.+|....-.    +.|++.++++..++...                   +.  +++|.+|+|||..... ....+
T Consensus         1 igvl~~qg~~~e~~----~~l~~~g~~v~~v~~~~-------------------~l--~~~dgiii~Gg~~~~~~~~~~~   55 (183)
T cd01749           1 IGVLALQGDFREHI----RALERLGVEVIEVRTPE-------------------DL--EGIDGLIIPGGESTTIGKLLRR   55 (183)
T ss_pred             CEEEEecCCcHHHH----HHHHHCCCeEEEECCHH-------------------Hh--ccCCEEEECCchHHHHHHHHHh
Confidence            56777777554332    89999999998886631                   12  5689999999863211 12234


Q ss_pred             HHHHHHHHHHHHcCCeEEEEchhHHHHHHcC
Q 012037          369 RILKKLLKEQKVAGRIYGAVCSSPIVLHKHG  399 (472)
Q Consensus       369 ~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG  399 (472)
                      ..+.++|+++.++++++.++|.|..+|+++-
T Consensus        56 ~~~~~~i~~~~~~g~PvlGiC~G~qlL~~~~   86 (183)
T cd01749          56 TGLLDPLREFIRAGKPVFGTCAGLILLAKEV   86 (183)
T ss_pred             CCHHHHHHHHHHcCCeEEEECHHHHHHHHHh
Confidence            5678999999999999999999999998753

Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.

>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.53  E-value=0.00026  Score=66.23  Aligned_cols=85  Identities=21%  Similarity=0.272  Sum_probs=60.4

Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc--c
Q 012037          290 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ--K  367 (472)
Q Consensus       290 V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~--~  367 (472)
                      |+|+-+.+-+   ...+.+.|++.|++++++..                   .+++  .+||.||||||........  .
T Consensus         2 i~~~d~~~~~---~~~i~~~l~~~G~~v~~~~~-------------------~~~l--~~~d~iiipG~~~~~~~~~~~~   57 (205)
T PRK13141          2 IAIIDYGMGN---LRSVEKALERLGAEAVITSD-------------------PEEI--LAADGVILPGVGAFPDAMANLR   57 (205)
T ss_pred             EEEEEcCCch---HHHHHHHHHHCCCeEEEECC-------------------HHHh--ccCCEEEECCCCchHHHHHHHH
Confidence            4555555433   36678999999998887521                   1233  5799999999642122111  1


Q ss_pred             cHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      ...+.++|+++.++++++.+||.|..+|++.
T Consensus        58 ~~~~~~~i~~~~~~~~pvlGIC~G~Qll~~~   88 (205)
T PRK13141         58 ERGLDEVIKEAVASGKPLLGICLGMQLLFES   88 (205)
T ss_pred             HcChHHHHHHHHHCCCcEEEECHHHHHhhhc
Confidence            2357899999999999999999999999986

>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional

Probab=97.51  E-value=0.00036  Score=65.44  Aligned_cols=95  Identities=17%  Similarity=0.229  Sum_probs=67.1

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCC-Ccc--hh
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGG-VAG--AE  363 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG-~~~--~~  363 (472)
                      |++|+|+-|..-+..++   .+.|++.|+++.++...                   +++  .++|.||+||+ ...  ..
T Consensus         1 ~~~v~iid~~~GN~~sl---~~al~~~g~~v~vv~~~-------------------~~l--~~~d~iIlPG~g~~~~~~~   56 (210)
T CHL00188          1 MMKIGIIDYSMGNLHSV---SRAIQQAGQQPCIINSE-------------------SEL--AQVHALVLPGVGSFDLAMK   56 (210)
T ss_pred             CcEEEEEEcCCccHHHH---HHHHHHcCCcEEEEcCH-------------------HHh--hhCCEEEECCCCchHHHHH
Confidence            56899999986666544   67777889988877421                   123  45899999994 311  11


Q ss_pred             cccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc---------CCCCCcee
Q 012037          364 RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH---------GLLKAKKA  406 (472)
Q Consensus       364 ~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a---------GlL~g~~~  406 (472)
                      .+ ++..+.+.|+++.++++++.+||-|-.+|++.         |+++|+-.
T Consensus        57 ~l-~~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v~  107 (210)
T CHL00188         57 KL-EKKGLITPIKKWIAEGNPFIGICLGLHLLFETSEEGKEEGLGIYKGQVK  107 (210)
T ss_pred             HH-HHCCHHHHHHHHHHcCCCEEEECHHHHHHhhccccCCcCCccceeEEEE
Confidence            12 12246678888888999999999999999985         56777543

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=97.49  E-value=0.00039  Score=72.98  Aligned_cols=91  Identities=19%  Similarity=0.127  Sum_probs=67.6

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc--cccc
Q 012037           85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG--SVRL  162 (472)
Q Consensus        85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~--~~~l  162 (472)
                      .||+|.-.+-|+. .+..=.+.|++.|.++.++++-..                 ++.+  +||+|++|||...  ...+
T Consensus       246 ~~iava~d~af~f-~y~e~~~~L~~~g~~~~~~~~~~~-----------------~~l~--~~D~lilpGG~~~~~~~~l  305 (451)
T PRK01077        246 VRIAVARDAAFNF-YYPENLELLRAAGAELVFFSPLAD-----------------EALP--DCDGLYLGGGYPELFAAEL  305 (451)
T ss_pred             ceEEEEecCcccc-cHHHHHHHHHHCCCEEEEeCCcCC-----------------CCCC--CCCEEEeCCCchhhHHHHH
Confidence            5899998774433 344446888888999988876421                 1223  6999999999643  3456


Q ss_pred             cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ..+..+.+.|+++.++|++|.++|.|.. +|++.
T Consensus       306 ~~~~~~~~~i~~~~~~g~~i~aiCgG~~-~L~~~  338 (451)
T PRK01077        306 AANTSMRASIRAAAAAGKPIYAECGGLM-YLGES  338 (451)
T ss_pred             hhCchhHHHHHHHHHcCCCEEEEcHHHH-HHHhh
Confidence            6778899999999999999999999754 56654

>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]

Probab=97.46  E-value=0.00027  Score=63.19  Aligned_cols=86  Identities=28%  Similarity=0.305  Sum_probs=61.6

Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhCC-CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcc-hhcc
Q 012037          288 PRVLIPIANGSEEIEIVTIVDILRRAK-VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG-AERL  365 (472)
Q Consensus       288 ~~V~il~~~g~~~~e~~~~~d~l~~a~-~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~-~~~~  365 (472)
                      |||+|+.+.|--..    =.+.+++++ .++.                   .-+..+|+  ++.|.||||||--. ..++
T Consensus         1 m~IGVLalQG~v~E----H~~~l~~~~~~e~~-------------------~Vk~~~dL--~~~d~LIiPGGESTTi~rL   55 (194)
T COG0311           1 MKIGVLALQGAVEE----HLEALEKAGGAEVV-------------------EVKRPEDL--EGVDGLIIPGGESTTIGRL   55 (194)
T ss_pred             CeEEEEEecccHHH----HHHHHHhhcCCceE-------------------EEcCHHHh--ccCcEEEecCccHHHHHHH
Confidence            57899998874333    345566664 2222                   22234555  67899999999521 2345


Q ss_pred             cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      .+...+.+-|+++..+|+++.+.|+|..+||+-
T Consensus        56 ~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLake   88 (194)
T COG0311          56 LKRYGLLEPLREFIADGLPVFGTCAGLILLAKE   88 (194)
T ss_pred             HHHcCcHHHHHHHHHcCCceEEechhhhhhhhh
Confidence            666788999999999999999999999999973

>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ)

Probab=97.46  E-value=0.00034  Score=64.86  Aligned_cols=87  Identities=20%  Similarity=0.077  Sum_probs=60.5

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccC--
Q 012037           87 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD--  164 (472)
Q Consensus        87 V~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~--  164 (472)
                      |+++.+++..  -+..+...++..|++++++++..+                   .  .++|+|++|||......+..  
T Consensus         1 ~~~~~y~~~g--N~~~l~~~~~~~G~~~~~~~~~~~-------------------~--~~~d~lilpGg~~~~~~~~~~~   57 (194)
T cd01750           1 IAVIRYPDIS--NFTDLDPLAREPGVDVRYVEVPEG-------------------L--GDADLIILPGSKDTIQDLAWLR   57 (194)
T ss_pred             CEeecCCCcc--CHHHHHHHHhcCCceEEEEeCCCC-------------------C--CCCCEEEECCCcchHHHHHHHH
Confidence            4566665432  235557777788999988886631                   1  26899999999522222222  


Q ss_pred             ChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCC
Q 012037          165 CEILKKITSKQAEEKRLYGAICAAPAVTLLPWG  197 (472)
Q Consensus       165 ~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aG  197 (472)
                      +..+.+.|+++.+++++|.+||.|.. +|++.-
T Consensus        58 ~~~~~~~i~~~~~~g~pvlgiC~G~q-lL~~~~   89 (194)
T cd01750          58 KRGLAEAIKNYARAGGPVLGICGGYQ-MLGKYI   89 (194)
T ss_pred             HcCHHHHHHHHHHCCCcEEEECHHHH-Hhhhhc
Confidence            44688999999999999999999755 676653

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.

>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=97.45  E-value=0.00073  Score=62.16  Aligned_cols=92  Identities=18%  Similarity=0.231  Sum_probs=63.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHHHhCC---CEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc-c-
Q 012037           86 KVLVPVGFGTEEMEAVIIVDVLRRAG---AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS-V-  160 (472)
Q Consensus        86 kV~ill~~g~~~~e~~~~~~~l~~ag---~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~-~-  160 (472)
                      ||+|+..+....  .....+.|+++|   ++++++-...+ ..             ..+.  .+||+|+++||.... . 
T Consensus         1 ~i~il~~~~~~~--~~~~~~~l~~~g~~~~~~~~~~~~~~-~~-------------~~~~--~~~dgvil~Gg~~~~~~~   62 (188)
T cd01741           1 RILILQHDTPEG--PGLFEDLLREAGAETIEIDVVDVYAG-EL-------------LPDL--DDYDGLVILGGPMSVDED   62 (188)
T ss_pred             CEEEEECCCCCC--cchHHHHHHhcCCCCceEEEEecCCC-CC-------------CCCc--ccCCEEEECCCCccCCcc
Confidence            577887776554  566778888887   67776665543 10             1222  379999999995433 1 


Q ss_pred             cccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          161 RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       161 ~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      .....+.+.++|+++.++++++.+||.|.. +|+.+
T Consensus        63 ~~~~~~~~~~~i~~~~~~~~pilgiC~G~q-~l~~~   97 (188)
T cd01741          63 DYPWLKKLKELIRQALAAGKPVLGICLGHQ-LLARA   97 (188)
T ss_pred             CChHHHHHHHHHHHHHHCCCCEEEECccHH-HHHHH
Confidence            122236788999999999999999999765 66654

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II

Probab=97.44  E-value=0.0011  Score=76.36  Aligned_cols=107  Identities=17%  Similarity=0.357  Sum_probs=76.9

Q ss_pred             CCCEEEEEeCCCC-CHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEee-cCCc-cccCCCcccEEEEcCCCcch
Q 012037          286 RMPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIA-DKSI-SDAAESVYDLIILPGGVAGA  362 (472)
Q Consensus       286 ~~~~V~il~~~g~-~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~-d~~l-~~~~~~~~D~livpGG~~~~  362 (472)
                      ..+||+|+.+||. ++.|...+++   ++|+++.++....-  ...    .+.. -..+ .++  .+||+|++|||....
T Consensus       976 ~kpkvaIl~~pGtNce~d~a~Af~---~aG~~~~~v~~~dl--~~~----~i~~s~~~~~~~l--~~~~~l~~pGGFSyG 1044 (1239)
T TIGR01857       976 EKPRVVIPVFPGTNSEYDSAKAFE---KEGAEVNLVIFRNL--NEE----ALVESVETMVDEI--DKSQILMLPGGFSAG 1044 (1239)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH---HcCCceEEEEEecC--ccc----ccccchhhhhccc--ccCcEEEEcCccCcc
Confidence            4589999999996 7888776655   59988877765431  000    0000 0011 223  689999999986322


Q ss_pred             hc----------ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCC
Q 012037          363 ER----------LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKA  403 (472)
Q Consensus       363 ~~----------~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g  403 (472)
                      +.          +..++.+.+-+++|.++++.+.+||+|-.+|.+.|||-+
T Consensus      1045 D~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~lGLlP~ 1095 (1239)
T TIGR01857      1045 DEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLPY 1095 (1239)
T ss_pred             cccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHcCCCcC
Confidence            22          244678899999999999999999999999999999975

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.

>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis

Probab=97.35  E-value=0.00036  Score=64.02  Aligned_cols=84  Identities=18%  Similarity=0.129  Sum_probs=61.4

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc-cccCC
Q 012037           87 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV-RLRDC  165 (472)
Q Consensus        87 V~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~-~l~~~  165 (472)
                      |+||+..|....-.    +.|++.|+++..+.+..                   +.  .++|.+++|||..... ....+
T Consensus         1 igvl~~qg~~~e~~----~~l~~~g~~v~~v~~~~-------------------~l--~~~dgiii~Gg~~~~~~~~~~~   55 (183)
T cd01749           1 IGVLALQGDFREHI----RALERLGVEVIEVRTPE-------------------DL--EGIDGLIIPGGESTTIGKLLRR   55 (183)
T ss_pred             CEEEEecCCcHHHH----HHHHHCCCeEEEECCHH-------------------Hh--ccCCEEEECCchHHHHHHHHHh
Confidence            57888887665333    89999999998887631                   12  2699999999953211 12244


Q ss_pred             hHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          166 EILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       166 ~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ..+.++|++++++++++.++|.|.. +|+++
T Consensus        56 ~~~~~~i~~~~~~g~PvlGiC~G~q-lL~~~   85 (183)
T cd01749          56 TGLLDPLREFIRAGKPVFGTCAGLI-LLAKE   85 (183)
T ss_pred             CCHHHHHHHHHHcCCeEEEECHHHH-HHHHH
Confidence            5678999999999999999999754 67764

Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.

>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.32  E-value=0.00096  Score=62.55  Aligned_cols=88  Identities=26%  Similarity=0.296  Sum_probs=57.6

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhCCCe--EEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRRAKVD--VVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER  364 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~--v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~  364 (472)
                      ||||+|+-|..-+..++   ...|++.|++  +.+++                   ..+++  +++|.|||||+......
T Consensus         1 ~~~~~iid~g~gn~~s~---~~al~~~g~~~~v~~~~-------------------~~~~l--~~~d~lIlpG~~~~~~~   56 (209)
T PRK13146          1 MMTVAIIDYGSGNLRSA---AKALERAGAGADVVVTA-------------------DPDAV--AAADRVVLPGVGAFADC   56 (209)
T ss_pred             CCeEEEEECCCChHHHH---HHHHHHcCCCccEEEEC-------------------CHHHh--cCCCEEEECCCCcHHHH
Confidence            57899998887666555   5777777874  33221                   22344  67999999996422111


Q ss_pred             ---ccccHHHHH-HHHHHHHcCCeEEEEchhHHHHHHcC
Q 012037          365 ---LQKSRILKK-LLKEQKVAGRIYGAVCSSPIVLHKHG  399 (472)
Q Consensus       365 ---~~~~~~l~~-~L~~~~~~g~~v~aic~G~~lLA~aG  399 (472)
                         +... .+.+ +++...++++++.+||.|..+|++++
T Consensus        57 ~~~l~~~-~~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~   94 (209)
T PRK13146         57 MRGLRAV-GLGEAVIEAVLAAGRPFLGICVGMQLLFERG   94 (209)
T ss_pred             HHHHHHC-CcHHHHHHHHHhCCCcEEEECHHHHHHhhcc
Confidence               1111 1233 34444568999999999999999983

>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

Probab=97.29  E-value=0.0012  Score=60.36  Aligned_cols=75  Identities=15%  Similarity=0.071  Sum_probs=56.7

Q ss_pred             HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCe
Q 012037          305 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI  384 (472)
Q Consensus       305 ~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~  384 (472)
                      ..++.|+.+|+++.++..+..                .++....+||.|+++||.....   ......++++++.+++++
T Consensus        11 ~~~~~l~~~G~~~~~~~~~~~----------------~~~~~~~~~dgiil~GG~~~~~---~~~~~~~~~~~~~~~~~P   71 (178)
T cd01744          11 NILRELLKRGCEVTVVPYNTD----------------AEEILKLDPDGIFLSNGPGDPA---LLDEAIKTVRKLLGKKIP   71 (178)
T ss_pred             HHHHHHHHCCCeEEEEECCCC----------------HHHHhhcCCCEEEECCCCCChh---HhHHHHHHHHHHHhCCCC
Confidence            458888889998888765532                2222225799999999974333   246788899999999999


Q ss_pred             EEEEchhHHHHHHc
Q 012037          385 YGAVCSSPIVLHKH  398 (472)
Q Consensus       385 v~aic~G~~lLA~a  398 (472)
                      |.+||.|..+|+.+
T Consensus        72 vlGIC~G~Q~l~~~   85 (178)
T cd01744          72 IFGICLGHQLLALA   85 (178)
T ss_pred             EEEECHHHHHHHHH
Confidence            99999999999864

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is

>PRK06895 putative anthranilate synthase component II; Provisional

Probab=97.29  E-value=0.0013  Score=60.80  Aligned_cols=87  Identities=20%  Similarity=0.306  Sum_probs=62.3

Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc
Q 012037          288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK  367 (472)
Q Consensus       288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~  367 (472)
                      |||+|+  |..+.... .+.+.|++.|++++++..+..               ..+++  ++||.|||.||...+.   .
T Consensus         2 ~~ilii--d~~dsf~~-~i~~~l~~~g~~~~v~~~~~~---------------~~~~l--~~~d~iIi~gGp~~~~---~   58 (190)
T PRK06895          2 TKLLII--NNHDSFTF-NLVDLIRKLGVPMQVVNVEDL---------------DLDEV--ENFSHILISPGPDVPR---A   58 (190)
T ss_pred             cEEEEE--eCCCchHH-HHHHHHHHcCCcEEEEECCcc---------------ChhHh--ccCCEEEECCCCCChH---H
Confidence            456665  44433333 389999999999998876432               12334  5689999999874322   2


Q ss_pred             cHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      .+.+.++|++ .++++++.+||-|..+|+.+
T Consensus        59 ~~~~~~~i~~-~~~~~PiLGIClG~Qlla~~   88 (190)
T PRK06895         59 YPQLFAMLER-YHQHKSILGVCLGHQTLCEF   88 (190)
T ss_pred             hhHHHHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence            3567788886 67899999999999999976

>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II

Probab=97.27  E-value=0.0015  Score=75.24  Aligned_cols=110  Identities=21%  Similarity=0.253  Sum_probs=75.5

Q ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCC--CCCcccEEEEcCCcccc
Q 012037           82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNC--SHQVFDLIALPGGMPGS  159 (472)
Q Consensus        82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~--~~~~~D~vivpGG~~~~  159 (472)
                      ....||+|+.++|.+-.  .....+|+++|+++..+....=  ....    +  ..++++.  ...+||+|++|||+..-
T Consensus       975 ~~kpkvaIl~~pGtNce--~d~a~Af~~aG~~~~~v~~~dl--~~~~----i--~~s~~~~~~~l~~~~~l~~pGGFSyG 1044 (1239)
T TIGR01857       975 VEKPRVVIPVFPGTNSE--YDSAKAFEKEGAEVNLVIFRNL--NEEA----L--VESVETMVDEIDKSQILMLPGGFSAG 1044 (1239)
T ss_pred             CCCCeEEEEECCCCCCH--HHHHHHHHHcCCceEEEEEecC--cccc----c--ccchhhhhcccccCcEEEEcCccCcc
Confidence            35679999999997632  2346677789999888876531  1000    0  0111111  12379999999997432


Q ss_pred             ccc----------cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCc
Q 012037          160 VRL----------RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRK  202 (472)
Q Consensus       160 ~~l----------~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~  202 (472)
                      +.+          ..++.+.+-+++++++++.+.+||+|-+ +|.+.|||.+.
T Consensus      1045 D~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ-~L~~lGLlP~~ 1096 (1239)
T TIGR01857      1045 DEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQ-ALVKSGLLPYG 1096 (1239)
T ss_pred             cccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHH-HHHHcCCCcCc
Confidence            222          3457888888999999999999999755 89999999753

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.

>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional

Probab=97.23  E-value=0.0023  Score=74.21  Aligned_cols=101  Identities=16%  Similarity=0.191  Sum_probs=75.2

Q ss_pred             CCCEEEEEeCCCC-CHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh-
Q 012037          286 RMPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-  363 (472)
Q Consensus       286 ~~~~V~il~~~g~-~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~-  363 (472)
                      ..+||+|+.++|. ++.|+..+   |..+||++..+....  ...+             .....+|++|++|||....+ 
T Consensus      1036 ~~pkVaVl~~pGtN~~~e~~~A---f~~aGf~~~~V~~~d--l~~~-------------~~~L~~~~glv~pGGFSyGD~ 1097 (1307)
T PLN03206       1036 SKPKVAIIREEGSNGDREMAAA---FYAAGFEPWDVTMSD--LLNG-------------RISLDDFRGIVFVGGFSYADV 1097 (1307)
T ss_pred             CCCeEEEEECCCCCCHHHHHHH---HHHcCCceEEEEeee--cccc-------------cccccceeEEEEcCcCCCccc
Confidence            4589999999997 67777655   447998887776542  1111             11126799999999863111 


Q ss_pred             ---------cccccHHHHHHHHHHH-HcCCeEEEEchhHHHHHHcCCCCCc
Q 012037          364 ---------RLQKSRILKKLLKEQK-VAGRIYGAVCSSPIVLHKHGLLKAK  404 (472)
Q Consensus       364 ---------~~~~~~~l~~~L~~~~-~~g~~v~aic~G~~lLA~aGlL~g~  404 (472)
                               .+..++.+.+.+++|. ++++.+.+||+|-.+|.+.|||-|-
T Consensus      1098 l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~~lgllPg~ 1148 (1307)
T PLN03206       1098 LDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMALLGWVPGP 1148 (1307)
T ss_pred             cchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHHHHHHcCCCCCC
Confidence                     2355678899999998 5599999999999999999999864

>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form

Probab=97.20  E-value=0.0021  Score=74.94  Aligned_cols=101  Identities=13%  Similarity=0.131  Sum_probs=75.3

Q ss_pred             CCCEEEEEeCCCC-CHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh-
Q 012037          286 RMPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-  363 (472)
Q Consensus       286 ~~~~V~il~~~g~-~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~-  363 (472)
                      +.+||+|+.++|. ++.|+..   .|+.+||+...+....=  .             -.+...++|++|++|||....+ 
T Consensus      1054 ~~p~vail~~pG~N~~~e~~~---Af~~aGf~~~~v~~~dl--~-------------~~~~~l~~~~~lv~~GGFSygD~ 1115 (1310)
T TIGR01735      1054 VRPKVAILREQGVNGDREMAA---AFDRAGFEAWDVHMSDL--L-------------AGRVHLDEFRGLAACGGFSYGDV 1115 (1310)
T ss_pred             CCceEEEEECCCCCCHHHHHH---HHHHhCCCcEEEEEecc--c-------------cCCcchhheeEEEEcCCCCCccc
Confidence            4589999999997 6777765   45588988877765431  0             0011126799999999852111 


Q ss_pred             ---------cccccHHHHHHHHHHH-HcCCeEEEEchhHHHHH-HcCCCCCc
Q 012037          364 ---------RLQKSRILKKLLKEQK-VAGRIYGAVCSSPIVLH-KHGLLKAK  404 (472)
Q Consensus       364 ---------~~~~~~~l~~~L~~~~-~~g~~v~aic~G~~lLA-~aGlL~g~  404 (472)
                               .+..++.+.+.+++|. ++++.+.+||+|-.+|. +.|||-|.
T Consensus      1116 lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~gllp~~ 1167 (1310)
T TIGR01735      1116 LGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLEWIPGT 1167 (1310)
T ss_pred             hhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHHHHHHHhCcCCCC
Confidence                     2455778899999998 89999999999999999 99999864

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.

>PRK06490 glutamine amidotransferase; Provisional

Probab=97.14  E-value=0.0038  Score=59.77  Aligned_cols=97  Identities=12%  Similarity=0.048  Sum_probs=68.6

Q ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037           82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR  161 (472)
Q Consensus        82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~  161 (472)
                      ..++||.|+.-.+++...  .+.+.|+..|++++++.+..+.+        + +    ++.  .+||+++|.||..+...
T Consensus         5 ~~~~~vlvi~h~~~~~~g--~l~~~l~~~g~~~~v~~~~~~~~--------~-p----~~l--~~~dgvii~Ggp~~~~d   67 (239)
T PRK06490          5 RDKRPVLIVLHQERSTPG--RVGQLLQERGYPLDIRRPRLGDP--------L-P----DTL--EDHAGAVIFGGPMSAND   67 (239)
T ss_pred             CCCceEEEEecCCCCCCh--HHHHHHHHCCCceEEEeccCCCC--------C-C----Ccc--cccCEEEEECCCCCCCC
Confidence            347899999877765554  47889999999999887664411        1 1    122  26999999998533322


Q ss_pred             cc-CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          162 LR-DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       162 l~-~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      .. -...+++||++.++.++++.+||-|.. +|+.+
T Consensus        68 ~~~wi~~~~~~i~~~~~~~~PvLGIC~G~Q-lla~a  102 (239)
T PRK06490         68 PDDFIRREIDWISVPLKENKPFLGICLGAQ-MLARH  102 (239)
T ss_pred             CchHHHHHHHHHHHHHHCCCCEEEECHhHH-HHHHH
Confidence            11 124567899999999999999999866 67776

>PRK05665 amidotransferase; Provisional

Probab=97.14  E-value=0.0054  Score=58.72  Aligned_cols=51  Identities=20%  Similarity=0.143  Sum_probs=40.7

Q ss_pred             CcccEEEEcCCCcchhc-ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          348 SVYDLIILPGGVAGAER-LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       348 ~~~D~livpGG~~~~~~-~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      ++||.+||.||..+... ..--..+.+||++..++++++.+||-|-.+||++
T Consensus        56 ~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~A  107 (240)
T PRK05665         56 EKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALL  107 (240)
T ss_pred             ccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHH
Confidence            57999999999644321 1112567899999999999999999999999876

>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional

Probab=97.12  E-value=0.0033  Score=73.50  Aligned_cols=100  Identities=13%  Similarity=0.209  Sum_probs=73.8

Q ss_pred             CCCEEEEEeCCCC-CHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh-
Q 012037          286 RMPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-  363 (472)
Q Consensus       286 ~~~~V~il~~~g~-~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~-  363 (472)
                      ..+||+|+.+||. ++.|+..+   |+.+||++..+....-  ....           ..+  .+|++|++|||....+ 
T Consensus      1034 ~~pkv~il~~pG~N~~~e~~~A---f~~aG~~~~~v~~~dl--~~~~-----------~~l--~~~~~l~~~GGFS~gD~ 1095 (1290)
T PRK05297       1034 ARPKVAILREQGVNSHVEMAAA---FDRAGFDAIDVHMSDL--LAGR-----------VTL--EDFKGLVACGGFSYGDV 1095 (1290)
T ss_pred             CCCeEEEEECCCCCCHHHHHHH---HHHcCCCeEEEEeecC--cCCC-----------CCh--hhCcEEEECCccCCccc
Confidence            4579999999997 67776554   4589998877766531  1110           123  6799999999853212 


Q ss_pred             ---------cccccHHHHHHHHHHH-HcCCeEEEEchhHHHHHHcC-CCCC
Q 012037          364 ---------RLQKSRILKKLLKEQK-VAGRIYGAVCSSPIVLHKHG-LLKA  403 (472)
Q Consensus       364 ---------~~~~~~~l~~~L~~~~-~~g~~v~aic~G~~lLA~aG-lL~g  403 (472)
                               .+..|+.+.+.+++|. ++++.+.+||+|-.+|.+.| |+.|
T Consensus      1096 lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~lg~l~p~ 1146 (1290)
T PRK05297       1096 LGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMSNLKEIIPG 1146 (1290)
T ss_pred             chHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHHHHHhCCccCC
Confidence                     2345678899999976 88999999999999999998 7655

>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.11  E-value=0.00095  Score=62.37  Aligned_cols=85  Identities=15%  Similarity=0.066  Sum_probs=57.8

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc--C
Q 012037           87 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR--D  164 (472)
Q Consensus        87 V~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~--~  164 (472)
                      |.|+-+.+   .....+.+.|++.|++++++...                   .+..  +||.||||||......+.  .
T Consensus         2 i~~~d~~~---~~~~~i~~~l~~~G~~v~~~~~~-------------------~~l~--~~d~iiipG~~~~~~~~~~~~   57 (205)
T PRK13141          2 IAIIDYGM---GNLRSVEKALERLGAEAVITSDP-------------------EEIL--AADGVILPGVGAFPDAMANLR   57 (205)
T ss_pred             EEEEEcCC---chHHHHHHHHHHCCCeEEEECCH-------------------HHhc--cCCEEEECCCCchHHHHHHHH
Confidence            45554443   33467799999999999886311                   1222  699999999732111111  1


Q ss_pred             ChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          165 CEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       165 ~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ...+.++|++.+++++++.+||.|.+ +|+..
T Consensus        58 ~~~~~~~i~~~~~~~~pvlGIC~G~Q-ll~~~   88 (205)
T PRK13141         58 ERGLDEVIKEAVASGKPLLGICLGMQ-LLFES   88 (205)
T ss_pred             HcChHHHHHHHHHCCCcEEEECHHHH-Hhhhc
Confidence            23578999999999999999999755 78875

>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional

Probab=97.10  E-value=0.0013  Score=61.57  Aligned_cols=86  Identities=19%  Similarity=0.102  Sum_probs=59.6

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc---
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV---  160 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~---  160 (472)
                      |+||+|+-+..-+.   ..+.++|++.|+++.++...                   ++..  ++|.||+||+ +...   
T Consensus         1 ~~~v~iid~~~GN~---~sl~~al~~~g~~v~vv~~~-------------------~~l~--~~d~iIlPG~-g~~~~~~   55 (210)
T CHL00188          1 MMKIGIIDYSMGNL---HSVSRAIQQAGQQPCIINSE-------------------SELA--QVHALVLPGV-GSFDLAM   55 (210)
T ss_pred             CcEEEEEEcCCccH---HHHHHHHHHcCCcEEEEcCH-------------------HHhh--hCCEEEECCC-CchHHHH
Confidence            46899998884444   45588888899998887432                   0122  5899999995 2221   


Q ss_pred             -cccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          161 -RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       161 -~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                       .+. +..+.+.|++++++++++.+||.|-. +|++.
T Consensus        56 ~~l~-~~gl~~~i~~~~~~~~pvlGIClG~Q-ll~~~   90 (210)
T CHL00188         56 KKLE-KKGLITPIKKWIAEGNPFIGICLGLH-LLFET   90 (210)
T ss_pred             HHHH-HCCHHHHHHHHHHcCCCEEEECHHHH-HHhhc
Confidence             121 22456778888899999999999755 67764

>PRK05665 amidotransferase; Provisional

Probab=97.06  E-value=0.0058  Score=58.51  Aligned_cols=50  Identities=20%  Similarity=0.122  Sum_probs=38.0

Q ss_pred             cccEEEEcCCccccccc-cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          146 VFDLIALPGGMPGSVRL-RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       146 ~~D~vivpGG~~~~~~l-~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      .||++||.||..+.... .--..+.+||++.+++++++.+||-|.. +|+.+
T Consensus        57 ~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQ-lla~A  107 (240)
T PRK05665         57 KFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQ-LLALL  107 (240)
T ss_pred             cCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHH-HHHHH
Confidence            69999999995333221 1115678999999999999999999766 67765

>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []

Probab=97.04  E-value=0.0008  Score=60.18  Aligned_cols=52  Identities=31%  Similarity=0.327  Sum_probs=44.0

Q ss_pred             CCcccEEEEcCCCcch--hcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          347 ESVYDLIILPGGVAGA--ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       347 ~~~~D~livpGG~~~~--~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      ++++|+|++|||....  ..+.++..+.+.|+++.++|.+|.++|.|-.+|.+.
T Consensus         5 ~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~   58 (158)
T PF07685_consen    5 PPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGES   58 (158)
T ss_pred             CCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHH
Confidence            4689999999998432  235567789999999999999999999999999875

Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=97.02  E-value=0.0024  Score=67.00  Aligned_cols=91  Identities=18%  Similarity=0.203  Sum_probs=68.7

Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcc--hhcc
Q 012037          288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG--AERL  365 (472)
Q Consensus       288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~--~~~~  365 (472)
                      .||+|+-.+-|+.+= -.=++.|+..|.++..+++-.+                 +++  +++|+|+||||...  ...+
T Consensus       245 ~~Iava~d~afnFy~-~~~~~~L~~~g~~~~~~~~~~d-----------------~~l--~~~d~l~ipGG~~~~~~~~l  304 (449)
T TIGR00379       245 VRIAVAQDQAFNFYY-QDNLDALTHNAAELVPFSPLED-----------------TEL--PDVDAVYIGGGFPELFAEEL  304 (449)
T ss_pred             cEEEEEechhhceeH-HHHHHHHHHCCCEEEEECCccC-----------------CCC--CCCCEEEeCCcHHHHHHHHH
Confidence            589999887665532 3445677788899988877532                 122  36899999999732  1335


Q ss_pred             cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      ..+..+.+.|+++.++|.+|.++|.|-.+|++.
T Consensus       305 ~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~  337 (449)
T TIGR00379       305 SQNQALRDSIKTFIHQGLPIYGECGGLMYLSQS  337 (449)
T ss_pred             HhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhh
Confidence            567788999999999999999999999999864

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>PRK09065 glutamine amidotransferase; Provisional

Probab=97.02  E-value=0.0037  Score=59.79  Aligned_cols=96  Identities=18%  Similarity=0.162  Sum_probs=62.1

Q ss_pred             CCEEEEEeCCCCCH--H-HHHHHHHHH----HhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCC
Q 012037          287 MPRVLIPIANGSEE--I-EIVTIVDIL----RRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGV  359 (472)
Q Consensus       287 ~~~V~il~~~g~~~--~-e~~~~~d~l----~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~  359 (472)
                      |++++|+..+.-..  - ......+.|    +..+.+++++-...+              ..+.+.  .+||.|||.||.
T Consensus         1 ~~~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~p~~--~~~dgvvi~Gg~   64 (237)
T PRK09065          1 VKPLLIIQTGTPPPSIRARYGDFPHWIRVALGLAEQPVVVVRVFAG--------------EPLPAP--DDFAGVIITGSW   64 (237)
T ss_pred             CCcEEEEECCCCChhHHhhcCCHHHHHHHHhccCCceEEEEeccCC--------------CCCCCh--hhcCEEEEeCCC
Confidence            46688886654321  1 122233433    446677776655543              122333  679999999997


Q ss_pred             cchhc-ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          360 AGAER-LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       360 ~~~~~-~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      ..... ..-...+.+||++..+.+++|.+||-|..+|+.+
T Consensus        65 ~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a  104 (237)
T PRK09065         65 AMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHA  104 (237)
T ss_pred             cccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHHH
Confidence            43211 1112567899999999999999999999999875

>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional

Probab=96.94  E-value=0.0051  Score=71.44  Aligned_cols=103  Identities=15%  Similarity=0.082  Sum_probs=74.6

Q ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc-
Q 012037           82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV-  160 (472)
Q Consensus        82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~-  160 (472)
                      ....||+|+.++|.+-.  .....+|+.+|+++..+....  ...+             .....+|+.|++|||+..-+ 
T Consensus      1035 ~~~pkVaVl~~pGtN~~--~e~~~Af~~aGf~~~~V~~~d--l~~~-------------~~~L~~~~glv~pGGFSyGD~ 1097 (1307)
T PLN03206       1035 TSKPKVAIIREEGSNGD--REMAAAFYAAGFEPWDVTMSD--LLNG-------------RISLDDFRGIVFVGGFSYADV 1097 (1307)
T ss_pred             CCCCeEEEEECCCCCCH--HHHHHHHHHcCCceEEEEeee--cccc-------------cccccceeEEEEcCcCCCccc
Confidence            34679999999997643  245778889999987777552  1111             11123799999999972211 


Q ss_pred             ---------cccCChHHHHHHHHHH-hcCCeEEEEchhhHHhhhcCCCCCCc
Q 012037          161 ---------RLRDCEILKKITSKQA-EEKRLYGAICAAPAVTLLPWGLLRRK  202 (472)
Q Consensus       161 ---------~l~~~~~~~~~l~~~~-~~~k~I~aic~g~~~lLa~aGlL~g~  202 (472)
                               .+..++.+++-+++++ +.++.+.+||+|- -+|.+.|||.|-
T Consensus      1098 l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGf-QiL~~lgllPg~ 1148 (1307)
T PLN03206       1098 LDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGC-QLMALLGWVPGP 1148 (1307)
T ss_pred             cchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHH-HHHHHcCCCCCC
Confidence                     2345678889999999 5599999999964 489999999864

>PRK09065 glutamine amidotransferase; Provisional

Probab=96.90  E-value=0.0069  Score=57.91  Aligned_cols=96  Identities=15%  Similarity=-0.002  Sum_probs=60.4

Q ss_pred             CcEEEEEeCCCCcH---HHHHHHHHHHH----hCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCc
Q 012037           84 PKKVLVPVGFGTEE---MEAVIIVDVLR----RAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGM  156 (472)
Q Consensus        84 ~~kV~ill~~g~~~---~e~~~~~~~l~----~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~  156 (472)
                      |+||+||..+.-.+   .......+.|.    ..+.+++++-...+.              .+.+.  ..||+|||.||.
T Consensus         1 ~~~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~p~~--~~~dgvvi~Gg~   64 (237)
T PRK09065          1 VKPLLIIQTGTPPPSIRARYGDFPHWIRVALGLAEQPVVVVRVFAGE--------------PLPAP--DDFAGVIITGSW   64 (237)
T ss_pred             CCcEEEEECCCCChhHHhhcCCHHHHHHHHhccCCceEEEEeccCCC--------------CCCCh--hhcCEEEEeCCC
Confidence            57899997765332   11222344444    457777766655431              12222  379999999995


Q ss_pred             ccccc-ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          157 PGSVR-LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       157 ~~~~~-l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ..... ..--..+.+||++.++++++|.+||-|.. +|+.+
T Consensus        65 ~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a  104 (237)
T PRK09065         65 AMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQ-LLAHA  104 (237)
T ss_pred             cccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHH-HHHHH
Confidence            33221 11115678999999999999999999766 66664

>PRK06895 putative anthranilate synthase component II; Provisional

Probab=96.90  E-value=0.0033  Score=57.99  Aligned_cols=87  Identities=17%  Similarity=0.289  Sum_probs=59.5

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccC
Q 012037           85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD  164 (472)
Q Consensus        85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~  164 (472)
                      |||+|+  |..+.... .+.+.|++.|++++++..+.. .              .++..  .||+|||-||.....   .
T Consensus         2 ~~ilii--d~~dsf~~-~i~~~l~~~g~~~~v~~~~~~-~--------------~~~l~--~~d~iIi~gGp~~~~---~   58 (190)
T PRK06895          2 TKLLII--NNHDSFTF-NLVDLIRKLGVPMQVVNVEDL-D--------------LDEVE--NFSHILISPGPDVPR---A   58 (190)
T ss_pred             cEEEEE--eCCCchHH-HHHHHHHHcCCcEEEEECCcc-C--------------hhHhc--cCCEEEECCCCCChH---H
Confidence            355444  54444444 489999999999999876532 0              11222  589999988843221   2


Q ss_pred             ChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          165 CEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       165 ~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      .+.+.++|++ ++.++++.+||-|.+ +|+.+
T Consensus        59 ~~~~~~~i~~-~~~~~PiLGIClG~Q-lla~~   88 (190)
T PRK06895         59 YPQLFAMLER-YHQHKSILGVCLGHQ-TLCEF   88 (190)
T ss_pred             hhHHHHHHHH-hcCCCCEEEEcHHHH-HHHHH
Confidence            3567888986 788999999999866 67766

>PRK07567 glutamine amidotransferase; Provisional

Probab=96.85  E-value=0.0053  Score=58.91  Aligned_cols=97  Identities=21%  Similarity=0.183  Sum_probs=58.6

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhCCCe---EEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRRAKVD---VVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE  363 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~---v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~  363 (472)
                      |+.|+|+-....+........++|++.+..   ++++....+             +....+.  ++||.|||.||.....
T Consensus         1 m~~ililq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~--~~~dgvIi~Gg~~~~~   65 (242)
T PRK07567          1 MKPFLLLSPRPEDEAADAEYAAFLRYTGLDPAELRRIRLDRE-------------PLPDLDL--DDYSGVIVGGSPFNVS   65 (242)
T ss_pred             CCcEEEEecCCCcccccchHHHHHHhcCCCccceEEEecccC-------------CCCCCCH--hhccEEEEcCCCCcCC
Confidence            455777666544443236667777777744   554443332             1011123  6799999999974332


Q ss_pred             cc--cccH-------HHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          364 RL--QKSR-------ILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       364 ~~--~~~~-------~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      ..  ...+       .+.++++...+++++|.+||-|..+|+.+
T Consensus        66 d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a  109 (242)
T PRK07567         66 DPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHH  109 (242)
T ss_pred             CCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHH
Confidence            11  0111       23345555558999999999999999976

>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]

Probab=96.83  E-value=0.0022  Score=57.47  Aligned_cols=85  Identities=22%  Similarity=0.166  Sum_probs=58.8

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHhCC-CEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcc-ccccc
Q 012037           85 KKVLVPVGFGTEEMEAVIIVDVLRRAG-AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMP-GSVRL  162 (472)
Q Consensus        85 ~kV~ill~~g~~~~e~~~~~~~l~~ag-~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~-~~~~l  162 (472)
                      +||+||...|--.    .=.+++++++ .++..+  +                 ..++.+  ..|++|||||.. ....+
T Consensus         1 m~IGVLalQG~v~----EH~~~l~~~~~~e~~~V--k-----------------~~~dL~--~~d~LIiPGGESTTi~rL   55 (194)
T COG0311           1 MKIGVLALQGAVE----EHLEALEKAGGAEVVEV--K-----------------RPEDLE--GVDGLIIPGGESTTIGRL   55 (194)
T ss_pred             CeEEEEEecccHH----HHHHHHHhhcCCceEEE--c-----------------CHHHhc--cCcEEEecCccHHHHHHH
Confidence            5899999988533    3356677775 332222  1                 112333  689999999942 23346


Q ss_pred             cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhc
Q 012037          163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLP  195 (472)
Q Consensus       163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~  195 (472)
                      .+...+.+-|+++..+|+++.+.|+| ..+||+
T Consensus        56 ~~~~gl~e~l~~~~~~G~Pv~GTCAG-lIlLak   87 (194)
T COG0311          56 LKRYGLLEPLREFIADGLPVFGTCAG-LILLAK   87 (194)
T ss_pred             HHHcCcHHHHHHHHHcCCceEEechh-hhhhhh
Confidence            66778888999999999999999995 656665

>PHA03366 FGAM-synthase; Provisional

Probab=96.83  E-value=0.0089  Score=69.92  Aligned_cols=98  Identities=11%  Similarity=0.108  Sum_probs=74.2

Q ss_pred             CCCEEEEEeCCCC-CHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh-
Q 012037          286 RMPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-  363 (472)
Q Consensus       286 ~~~~V~il~~~g~-~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~-  363 (472)
                      ..+||+|+.++|. .+.|+..   .|..+||++..+....=  ...        +  .  +  ++|+.|++|||....+ 
T Consensus      1027 ~~prVaIl~~pG~N~~~e~~~---Af~~aGf~~~~v~~~dL--~~~--------~--~--l--~~f~glv~~GGFS~gD~ 1087 (1304)
T PHA03366       1027 KRHRVAVLLLPGCPGPHALLA---AFTNAGFDPYPVSIEEL--KDG--------T--F--L--DEFSGLVIGGSSGAEDS 1087 (1304)
T ss_pred             CCCeEEEEECCCCCCHHHHHH---HHHHcCCceEEEEeecC--CCC--------C--c--c--ccceEEEEcCCCCCccc
Confidence            4689999999997 5666654   45569999888876531  000        1  1  2  6789999999874222 


Q ss_pred             ---------cccccHHHHHHHHHHH-HcCCeEEEEch-hHHHHHHcCCCC
Q 012037          364 ---------RLQKSRILKKLLKEQK-VAGRIYGAVCS-SPIVLHKHGLLK  402 (472)
Q Consensus       364 ---------~~~~~~~l~~~L~~~~-~~g~~v~aic~-G~~lLA~aGlL~  402 (472)
                               .+..|+.+.+.+++|. ++++.+.+||+ |-.+|.+.|+|.
T Consensus      1088 l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~lgll~ 1137 (1304)
T PHA03366       1088 YTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILFALKAVG 1137 (1304)
T ss_pred             ccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHHHcCCcc
Confidence                     2356788999999998 56999999999 999999999994

>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=96.82  E-value=0.0034  Score=58.88  Aligned_cols=90  Identities=21%  Similarity=0.178  Sum_probs=55.8

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCE--EEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc-
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQ--VTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV-  160 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~--v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~-  160 (472)
                      ++||+|+=+..-+..+   ....|++.|++  +.++..                   -++..  .+|.|||||+..... 
T Consensus         1 ~~~~~iid~g~gn~~s---~~~al~~~g~~~~v~~~~~-------------------~~~l~--~~d~lIlpG~~~~~~~   56 (209)
T PRK13146          1 MMTVAIIDYGSGNLRS---AAKALERAGAGADVVVTAD-------------------PDAVA--AADRVVLPGVGAFADC   56 (209)
T ss_pred             CCeEEEEECCCChHHH---HHHHHHHcCCCccEEEECC-------------------HHHhc--CCCEEEECCCCcHHHH
Confidence            4689988777655544   47888888884  333211                   12233  799999999732111 


Q ss_pred             --cccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCC
Q 012037          161 --RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGL  198 (472)
Q Consensus       161 --~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGl  198 (472)
                        .+........+++..++.++++.+||.|.+ +|++++.
T Consensus        57 ~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q-~l~~~~~   95 (209)
T PRK13146         57 MRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQ-LLFERGL   95 (209)
T ss_pred             HHHHHHCCcHHHHHHHHHhCCCcEEEECHHHH-HHhhccc
Confidence              111112233445555678999999999755 7888754

>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=96.78  E-value=0.0063  Score=56.56  Aligned_cols=85  Identities=22%  Similarity=0.225  Sum_probs=57.1

Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc--cc
Q 012037          290 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL--QK  367 (472)
Q Consensus       290 V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~--~~  367 (472)
                      |+|+=|..-+..++   ...|+..|++++++..                   .+++  .++|.||+||+.......  ..
T Consensus         2 i~vid~g~gn~~~~---~~~l~~~g~~v~~~~~-------------------~~~l--~~~d~lilpG~g~~~~~~~~l~   57 (199)
T PRK13181          2 IAIIDYGAGNLRSV---ANALKRLGVEAVVSSD-------------------PEEI--AGADKVILPGVGAFGQAMRSLR   57 (199)
T ss_pred             EEEEeCCCChHHHH---HHHHHHCCCcEEEEcC-------------------hHHh--ccCCEEEECCCCCHHHHHHHHH
Confidence            55554444444444   4577888888877611                   1233  468999999964211111  11


Q ss_pred             cHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      ...+.++|+++.+.+++|.+||.|..+|+.+
T Consensus        58 ~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~   88 (199)
T PRK13181         58 ESGLDEALKEHVEKKQPVLGICLGMQLLFES   88 (199)
T ss_pred             HCChHHHHHHHHHCCCCEEEECHhHHHhhhh
Confidence            2246788998889999999999999999986

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=96.78  E-value=0.011  Score=60.19  Aligned_cols=144  Identities=17%  Similarity=0.130  Sum_probs=92.3

Q ss_pred             CEEeCCCCC---ChHHHHHHHHHHHhCchhHHhhhhccccccCCcchhhhcccccccc-cCCCCEEEEEeCCCCCHHHHH
Q 012037          229 EVTTSRGPG---TSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWF-FDRMPRVLIPIANGSEEIEIV  304 (472)
Q Consensus       229 ~iiTa~g~~---~~~dlal~li~~~~g~~~a~~va~~l~~~~~~~~~~~~~~n~~~~~-~~~~~~V~il~~~g~~~~e~~  304 (472)
                      +++++.-..   ..++-+-.++++...-+.-..++..=-       .....+.+...+ .....||+|.-=.-| ..=+-
T Consensus       190 GLV~a~E~~~~~~~~~~~a~~v~~~vDld~l~~ia~~~~-------~~~~~~~~~~~~~~~~~~rIAVA~D~AF-~FyY~  261 (451)
T COG1797         190 GLVPASERLELEAKLEALAEVVEKHVDLDALLEIASSAG-------PLEPDLSPEPERGNPLGVRIAVARDAAF-NFYYP  261 (451)
T ss_pred             ccccchhhhhHHHHHHHHHHHHHhhCCHHHHHHHHhccC-------CCCCCccccccccCCcCceEEEEecchh-ccccH
Confidence            466654332   234555666666666665555543110       001111111111 112258887643333 33344


Q ss_pred             HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcc--hhcccccHHHHHHHHHHHHcC
Q 012037          305 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG--AERLQKSRILKKLLKEQKVAG  382 (472)
Q Consensus       305 ~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~--~~~~~~~~~l~~~L~~~~~~g  382 (472)
                      --.|.|+.+|.++.++|+-.+                 ++. +++.|+|.+|||.+.  ...+..++...+.|+++++.|
T Consensus       262 ~nl~~Lr~~GAelv~FSPL~D-----------------~~l-P~~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~G  323 (451)
T COG1797         262 ENLELLREAGAELVFFSPLAD-----------------EEL-PPDVDAVYLGGGYPELFAEELSANESMRRAIKAFAAAG  323 (451)
T ss_pred             HHHHHHHHCCCEEEEeCCcCC-----------------CCC-CCCCCEEEeCCCChHHHHHHHhhCHHHHHHHHHHHHcC
Confidence            568999999999999999764                 122 235899999999853  345788999999999999999


Q ss_pred             CeEEEEchhHHHHHHc
Q 012037          383 RIYGAVCSSPIVLHKH  398 (472)
Q Consensus       383 ~~v~aic~G~~lLA~a  398 (472)
                      ++|-+=|.|-++|.+.
T Consensus       324 ~piyaECGGlMYL~~~  339 (451)
T COG1797         324 KPIYAECGGLMYLGES  339 (451)
T ss_pred             CceEEecccceeehhh
Confidence            9999999999998864

>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)

Probab=96.76  E-value=0.0019  Score=59.92  Aligned_cols=75  Identities=24%  Similarity=0.341  Sum_probs=55.0

Q ss_pred             HHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc--ccccHHHHHHHHHHHH
Q 012037          303 IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER--LQKSRILKKLLKEQKV  380 (472)
Q Consensus       303 ~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~--~~~~~~l~~~L~~~~~  380 (472)
                      +....+.|++.|++++++...                   +++  +++|.||+||+....+.  ......+.++|+++.+
T Consensus        11 ~~~~~~~l~~~g~~v~v~~~~-------------------~~l--~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~   69 (198)
T cd01748          11 LRSVANALERLGAEVIITSDP-------------------EEI--LSADKLILPGVGAFGDAMANLRERGLIEALKEAIA   69 (198)
T ss_pred             HHHHHHHHHHCCCeEEEEcCh-------------------HHh--ccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHH
Confidence            445578899999988887521                   123  56899999986421111  1123357899999999


Q ss_pred             cCCeEEEEchhHHHHHHc
Q 012037          381 AGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       381 ~g~~v~aic~G~~lLA~a  398 (472)
                      ++++|.+||.|..+|+++
T Consensus        70 ~~~pilGiC~G~q~l~~~   87 (198)
T cd01748          70 SGKPFLGICLGMQLLFES   87 (198)
T ss_pred             CCCcEEEECHHHHHhccc
Confidence            999999999999999997

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase

Probab=96.75  E-value=0.01  Score=69.05  Aligned_cols=98  Identities=11%  Similarity=0.100  Sum_probs=73.8

Q ss_pred             CCCEEEEEeCCCC-CHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh-
Q 012037          286 RMPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-  363 (472)
Q Consensus       286 ~~~~V~il~~~g~-~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~-  363 (472)
                      ..+||+|+.++|. ++.|+..   .|+.+||++..+....-  ...         ..+     ++|+.|+++||....+ 
T Consensus       928 ~~p~VaIl~~pG~N~~~e~~~---Af~~aGf~~~~v~~~dl--~~~---------~~l-----~~f~glv~~Ggfsy~D~  988 (1202)
T TIGR01739       928 PRHQVAVLLLPGQSVPHGLLA---ALTNAGFDPRIVSITEL--KKT---------DFL-----DTFSGLIIGGASGTLDS  988 (1202)
T ss_pred             CCCeEEEEeCCCCCCHHHHHH---HHHHcCCceEEEEeccC--CCC---------Cch-----hheEEEEEcCcCCCCcc
Confidence            4579999999997 5666654   45569999888876641  000         011     4689999999864222 


Q ss_pred             ---------cccccHHHHHHHHHHH-HcCCeEEEEch-hHHHHHHcCCCC
Q 012037          364 ---------RLQKSRILKKLLKEQK-VAGRIYGAVCS-SPIVLHKHGLLK  402 (472)
Q Consensus       364 ---------~~~~~~~l~~~L~~~~-~~g~~v~aic~-G~~lLA~aGlL~  402 (472)
                               .+..++.+.+.+++|. ++++.+.+||+ |-.+|.+.|+|.
T Consensus       989 lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~lg~l~ 1038 (1202)
T TIGR01739       989 EVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLLALNIVG 1038 (1202)
T ss_pred             chHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHHHHHcCCCc
Confidence                     2355788999999998 66999999999 999999999984

This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.

>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]

Probab=96.75  E-value=0.0014  Score=59.25  Aligned_cols=55  Identities=27%  Similarity=0.349  Sum_probs=40.5

Q ss_pred             CccccCCCcccEEEEcCCCcc-hhcccccHHHHHHHHHHHHcC-CeEEEEchhHHHHHH
Q 012037          341 SISDAAESVYDLIILPGGVAG-AERLQKSRILKKLLKEQKVAG-RIYGAVCSSPIVLHK  397 (472)
Q Consensus       341 ~l~~~~~~~~D~livpGG~~~-~~~~~~~~~l~~~L~~~~~~g-~~v~aic~G~~lLA~  397 (472)
                      .-+|+  ++.|.||||||--. ...+.....+.+.|+++.++| ++|.+.|+|..+||+
T Consensus        27 ~~~dL--~~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~   83 (188)
T PF01174_consen   27 TPEDL--EGLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLILLAK   83 (188)
T ss_dssp             SGGGG--TT-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHHHEE
T ss_pred             CHHHH--ccCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHHhhh
Confidence            34555  56899999999521 233555668999999999998 999999999999997

The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.

>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form

Probab=96.72  E-value=0.0058  Score=71.39  Aligned_cols=102  Identities=13%  Similarity=0.053  Sum_probs=73.5

Q ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc--
Q 012037           83 PPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV--  160 (472)
Q Consensus        83 ~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~--  160 (472)
                      ...||+|+.++|++-..  ....+|+.+|+++..+....=  ..        -     .....+|++|++|||+..-+  
T Consensus      1054 ~~p~vail~~pG~N~~~--e~~~Af~~aGf~~~~v~~~dl--~~--------~-----~~~l~~~~~lv~~GGFSygD~l 1116 (1310)
T TIGR01735      1054 VRPKVAILREQGVNGDR--EMAAAFDRAGFEAWDVHMSDL--LA--------G-----RVHLDEFRGLAACGGFSYGDVL 1116 (1310)
T ss_pred             CCceEEEEECCCCCCHH--HHHHHHHHhCCCcEEEEEecc--cc--------C-----CcchhheeEEEEcCCCCCccch
Confidence            35799999999977432  346688899999888876531  00        0     11223699999999962211  


Q ss_pred             --------cccCChHHHHHHHHHH-hcCCeEEEEchhhHHhhh-cCCCCCCc
Q 012037          161 --------RLRDCEILKKITSKQA-EEKRLYGAICAAPAVTLL-PWGLLRRK  202 (472)
Q Consensus       161 --------~l~~~~~~~~~l~~~~-~~~k~I~aic~g~~~lLa-~aGlL~g~  202 (472)
                              .+..++.+++-+++++ +.++.+.+||+|-+ +|. +.||+.|.
T Consensus      1117 gsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ-~L~~~~gllp~~ 1167 (1310)
T TIGR01735      1117 GAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQ-MLSNLLEWIPGT 1167 (1310)
T ss_pred             hHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHH-HHHHHhCcCCCC
Confidence                    1345678889999999 89999999999755 677 99999863

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.

>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)

Probab=96.68  E-value=0.0033  Score=58.33  Aligned_cols=74  Identities=19%  Similarity=0.147  Sum_probs=53.4

Q ss_pred             HHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc---cCChHHHHHHHHHH
Q 012037          100 AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL---RDCEILKKITSKQA  176 (472)
Q Consensus       100 ~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l---~~~~~~~~~l~~~~  176 (472)
                      +....+.|++.|++++++....                   +.+  +||+|++||+. .....   ..+..+.+++++++
T Consensus        11 ~~~~~~~l~~~g~~v~v~~~~~-------------------~l~--~~d~iiipG~~-~~~~~~~~~~~~~~~~~i~~~~   68 (198)
T cd01748          11 LRSVANALERLGAEVIITSDPE-------------------EIL--SADKLILPGVG-AFGDAMANLRERGLIEALKEAI   68 (198)
T ss_pred             HHHHHHHHHHCCCeEEEEcChH-------------------Hhc--cCCEEEECCCC-cHHHHHHHHHHcChHHHHHHHH
Confidence            4566889999999988876321                   122  69999999972 22111   12345789999999


Q ss_pred             hcCCeEEEEchhhHHhhhcC
Q 012037          177 EEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       177 ~~~k~I~aic~g~~~lLa~a  196 (472)
                      +++++|.+||.|.+ +|+.+
T Consensus        69 ~~~~pilGiC~G~q-~l~~~   87 (198)
T cd01748          69 ASGKPFLGICLGMQ-LLFES   87 (198)
T ss_pred             HCCCcEEEECHHHH-Hhccc
Confidence            99999999999754 78886

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK07765 para-aminobenzoate synthase component II; Provisional

Probab=96.67  E-value=0.012  Score=55.40  Aligned_cols=78  Identities=17%  Similarity=0.238  Sum_probs=56.6

Q ss_pred             HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCe
Q 012037          305 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI  384 (472)
Q Consensus       305 ~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~  384 (472)
                      ...+.|++.|+++.++..+.. ..         .  ...+. ..+||.|||.||+..+.   .....++|++++.+++++
T Consensus        15 ~~~~~l~~~G~~~~~~~~~~~-~~---------~--~~~~~-~~~~dgliisGGp~~~~---~~~~~~~~i~~~~~~~~P   78 (214)
T PRK07765         15 NLVQYLGQLGVEAEVWRNDDP-RL---------A--DEAAV-AAQFDGVLLSPGPGTPE---RAGASIDMVRACAAAGTP   78 (214)
T ss_pred             HHHHHHHHcCCcEEEEECCCc-CH---------H--HHHHh-hcCCCEEEECCCCCChh---hcchHHHHHHHHHhCCCC
Confidence            567889999999988866532 00         1  11111 14699999999975333   234567899999999999


Q ss_pred             EEEEchhHHHHHHc
Q 012037          385 YGAVCSSPIVLHKH  398 (472)
Q Consensus       385 v~aic~G~~lLA~a  398 (472)
                      |.+||-|..+|+.+
T Consensus        79 iLGIC~G~Qlla~a   92 (214)
T PRK07765         79 LLGVCLGHQAIGVA   92 (214)
T ss_pred             EEEEccCHHHHHHH
Confidence            99999999999864

>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

Probab=96.66  E-value=0.0059  Score=55.66  Aligned_cols=74  Identities=20%  Similarity=0.105  Sum_probs=53.7

Q ss_pred             HHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCe
Q 012037          102 IIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRL  181 (472)
Q Consensus       102 ~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~  181 (472)
                      ...+.|+++|+++.++..+..  .              ++....+||+|+++||.....   ++....++++++.+++++
T Consensus        11 ~~~~~l~~~G~~~~~~~~~~~--~--------------~~~~~~~~dgiil~GG~~~~~---~~~~~~~~~~~~~~~~~P   71 (178)
T cd01744          11 NILRELLKRGCEVTVVPYNTD--A--------------EEILKLDPDGIFLSNGPGDPA---LLDEAIKTVRKLLGKKIP   71 (178)
T ss_pred             HHHHHHHHCCCeEEEEECCCC--H--------------HHHhhcCCCEEEECCCCCChh---HhHHHHHHHHHHHhCCCC
Confidence            458888899999988876531  0              011122699999999943332   347788999999999999


Q ss_pred             EEEEchhhHHhhhc
Q 012037          182 YGAICAAPAVTLLP  195 (472)
Q Consensus       182 I~aic~g~~~lLa~  195 (472)
                      +.+||.|.. +|+.
T Consensus        72 vlGIC~G~Q-~l~~   84 (178)
T cd01744          72 IFGICLGHQ-LLAL   84 (178)
T ss_pred             EEEECHHHH-HHHH
Confidence            999999866 4554

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=96.61  E-value=0.012  Score=60.01  Aligned_cols=92  Identities=20%  Similarity=0.176  Sum_probs=71.5

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc--cccc
Q 012037           85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG--SVRL  162 (472)
Q Consensus        85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~--~~~l  162 (472)
                      .||+|---.-|+. =+-.-.+.|+..|+++.+.||-..                 ++.+ .+.|+|+||||++.  ...|
T Consensus       246 ~rIAVA~D~AF~F-yY~~nl~~Lr~~GAelv~FSPL~D-----------------~~lP-~~~D~vYlgGGYPElfA~~L  306 (451)
T COG1797         246 VRIAVARDAAFNF-YYPENLELLREAGAELVFFSPLAD-----------------EELP-PDVDAVYLGGGYPELFAEEL  306 (451)
T ss_pred             ceEEEEecchhcc-ccHHHHHHHHHCCCEEEEeCCcCC-----------------CCCC-CCCCEEEeCCCChHHHHHHH
Confidence            6899886554443 356678999999999999998753                 1233 25899999999864  3458


Q ss_pred             cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      .++...++.|++++..|++|-+=|.| -+.|.+.
T Consensus       307 ~~n~~~~~~i~~~~~~G~piyaECGG-lMYL~~~  339 (451)
T COG1797         307 SANESMRRAIKAFAAAGKPIYAECGG-LMYLGES  339 (451)
T ss_pred             hhCHHHHHHHHHHHHcCCceEEeccc-ceeehhh
Confidence            88999999999999999999999995 5455543

>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

Probab=96.57  E-value=0.0077  Score=55.40  Aligned_cols=77  Identities=17%  Similarity=0.109  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHc
Q 012037          302 EIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVA  381 (472)
Q Consensus       302 e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~  381 (472)
                      -...+.+.|++.|++++++..+.                +.+++...++|.||++||....    .+....+|+++..++
T Consensus        10 ~~~~l~~~l~~~g~~~~~~~~~~----------------~~~~~~~~~~~glii~Gg~~~~----~~~~~~~~i~~~~~~   69 (188)
T TIGR00888        10 YTQLIARRLRELGVYSELVPNTT----------------PLEEIREKNPKGIILSGGPSSV----YAENAPRADEKIFEL   69 (188)
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCC----------------CHHHHhhcCCCEEEECCCCCCc----CcCCchHHHHHHHhC
Confidence            34557788888898888775542                1223321246799999997422    122346788888899


Q ss_pred             CCeEEEEchhHHHHHHc
Q 012037          382 GRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       382 g~~v~aic~G~~lLA~a  398 (472)
                      +++|.+||-|..+|+.+
T Consensus        70 ~~PilGIC~G~Qll~~~   86 (188)
T TIGR00888        70 GVPVLGICYGMQLMAKQ   86 (188)
T ss_pred             CCCEEEECHHHHHHHHh
Confidence            99999999999999876

separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.

>PRK00784 cobyric acid synthase; Provisional

Probab=96.52  E-value=0.0058  Score=64.83  Aligned_cols=86  Identities=21%  Similarity=0.202  Sum_probs=64.5

Q ss_pred             CEEEEEeCCC-CCHHHHHHHHHHHHh-CCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc-
Q 012037          288 PRVLIPIANG-SEEIEIVTIVDILRR-AKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER-  364 (472)
Q Consensus       288 ~~V~il~~~g-~~~~e~~~~~d~l~~-a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~-  364 (472)
                      .||+|+-||. |+.    .=+|.|+. +|+++.++++..                   ++  +++|.|++|||...... 
T Consensus       252 ~~i~v~~~~~a~~f----~nl~~l~~~~g~~v~~~s~~~-------------------~l--~~~d~lilpGg~~~~~~~  306 (488)
T PRK00784        252 LRIAVIRLPRISNF----TDFDPLRAEPGVDVRYVRPGE-------------------PL--PDADLVILPGSKNTIADL  306 (488)
T ss_pred             eEEEEEeCCCcCCc----cChHHHhhcCCCeEEEECCcc-------------------cc--ccCCEEEECCccchHHHH
Confidence            5899999874 443    55677777 888888886532                   22  46799999999732222 


Q ss_pred             -ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          365 -LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       365 -~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                       +..+..+.+.|+++.++|++|.++|.|-.+|++.
T Consensus       307 ~~~~~~~l~~~i~~~~~~g~pilg~C~G~~~L~~~  341 (488)
T PRK00784        307 AWLRESGWDEAIRAHARRGGPVLGICGGYQMLGRR  341 (488)
T ss_pred             HHHHHcCHHHHHHHHHHcCCeEEEECHHHHHHhhh
Confidence             3345568899999999999999999999999873

>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []

Probab=96.48  E-value=0.007  Score=55.71  Aligned_cols=79  Identities=24%  Similarity=0.334  Sum_probs=58.9

Q ss_pred             HHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcC
Q 012037          303 IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAG  382 (472)
Q Consensus       303 ~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g  382 (472)
                      ...+...|++.|.+++++..+...            ....++  ..+||.++|+||......   .+..+++++++.+++
T Consensus        10 ~~~l~~~l~~~~~~~~v~~~~~~~------------~~~~~~--~~~~d~iii~Gg~~~~~d---~~~~~~~i~~~~~~~   72 (192)
T PF00117_consen   10 THSLVRALRELGIDVEVVRVDSDF------------EEPLED--LDDYDGIIISGGPGSPYD---IEGLIELIREARERK   72 (192)
T ss_dssp             HHHHHHHHHHTTEEEEEEETTGGH------------HHHHHH--TTTSSEEEEECESSSTTS---HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCeEEEEECCCch------------hhhhhh--hcCCCEEEECCcCCcccc---ccccccccccccccc
Confidence            345678888889888888765420            000112  378999999999754332   578888999999999


Q ss_pred             CeEEEEchhHHHHHHc
Q 012037          383 RIYGAVCSSPIVLHKH  398 (472)
Q Consensus       383 ~~v~aic~G~~lLA~a  398 (472)
                      +++.+||-|-.+|+.+
T Consensus        73 ~PilGIC~G~Q~la~~   88 (192)
T PF00117_consen   73 IPILGICLGHQILAHA   88 (192)
T ss_dssp             SEEEEETHHHHHHHHH
T ss_pred             eEEEEEeehhhhhHHh
Confidence            9999999999999875

The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....

>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=96.47  E-value=0.026  Score=52.33  Aligned_cols=77  Identities=21%  Similarity=0.193  Sum_probs=53.8

Q ss_pred             HHHHHHHhCCCeEE-EEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc--cHHHHHHHHHHHHc
Q 012037          305 TIVDILRRAKVDVV-VASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK--SRILKKLLKEQKVA  381 (472)
Q Consensus       305 ~~~d~l~~a~~~v~-~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~--~~~l~~~L~~~~~~  381 (472)
                      .+...++..|+... ++..+.                +..++...++|.+||.||+.+ .....  .+...+||++....
T Consensus        16 li~r~~re~g~v~~e~~~~~~----------------~~~~~~~~~~~giIlsGgp~s-v~~~~~w~~~~~~~i~~~~~p   78 (198)
T COG0518          16 LIARRLRELGYVYSEIVPYTG----------------DAEELPLDSPDGIIISGGPMS-VYDEDPWLPREKDLIKDAGVP   78 (198)
T ss_pred             HHHHHHHHcCCceEEEEeCCC----------------CcccccccCCCEEEEcCCCCC-CccccccchhHHHHHHHhCCC
Confidence            45566777885333 223322                344444456699999999733 22233  67889999999999


Q ss_pred             CCeEEEEchhHHHHHHc
Q 012037          382 GRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       382 g~~v~aic~G~~lLA~a  398 (472)
                      +++|.+||-|..+||++
T Consensus        79 ~~pvLGIC~G~Ql~A~~   95 (198)
T COG0518          79 GKPVLGICLGHQLLAKA   95 (198)
T ss_pred             CCCEEEEChhHHHHHHH
Confidence            99999999999999964

>PRK06774 para-aminobenzoate synthase component II; Provisional

Probab=96.44  E-value=0.013  Score=53.96  Aligned_cols=75  Identities=11%  Similarity=0.140  Sum_probs=54.2

Q ss_pred             HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCe
Q 012037          305 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI  384 (472)
Q Consensus       305 ~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~  384 (472)
                      .+++.|++.|++++++..+..               .++++...++|.||+-||+..+.+.   .....+++. .+++++
T Consensus        14 nl~~~l~~~~~~~~v~~~~~~---------------~~~~~~~~~~~~iilsgGP~~~~~~---~~~~~~i~~-~~~~~P   74 (191)
T PRK06774         14 NLYQYFCELGTEVMVKRNDEL---------------QLTDIEQLAPSHLVISPGPCTPNEA---GISLAVIRH-FADKLP   74 (191)
T ss_pred             HHHHHHHHCCCcEEEEeCCCC---------------CHHHHHhcCCCeEEEcCCCCChHhC---CCchHHHHH-hcCCCC
Confidence            577888899999988876532               2344433468999999998654432   224556654 467899


Q ss_pred             EEEEchhHHHHHHc
Q 012037          385 YGAVCSSPIVLHKH  398 (472)
Q Consensus       385 v~aic~G~~lLA~a  398 (472)
                      |.+||-|..+|+.+
T Consensus        75 iLGIC~G~Qlla~~   88 (191)
T PRK06774         75 ILGVCLGHQALGQA   88 (191)
T ss_pred             EEEECHHHHHHHHH
Confidence            99999999999986

>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=96.44  E-value=0.013  Score=54.32  Aligned_cols=83  Identities=20%  Similarity=0.223  Sum_probs=53.1

Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcC-CCcchhcc-
Q 012037          288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPG-GVAGAERL-  365 (472)
Q Consensus       288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpG-G~~~~~~~-  365 (472)
                      |+|+|+=|-.-+...+   ...|++.|++++++...                   +++  .++|.||+|| |.. .... 
T Consensus         1 m~i~iid~g~gn~~s~---~~~l~~~g~~~~~v~~~-------------------~~~--~~~d~iIlPG~G~~-~~~~~   55 (196)
T PRK13170          1 MNVVIIDTGCANLSSV---KFAIERLGYEPVVSRDP-------------------DVI--LAADKLFLPGVGTA-QAAMD   55 (196)
T ss_pred             CeEEEEeCCCchHHHH---HHHHHHCCCeEEEECCH-------------------HHh--CCCCEEEECCCCch-HHHHH
Confidence            4677776665555544   44788888888777321                   223  4579999999 431 1111 


Q ss_pred             -cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          366 -QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       366 -~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                       .+...+.+++++   .+++|.+||.|..+|+++
T Consensus        56 ~l~~~~l~~~i~~---~~~PilGIClG~Qll~~~   86 (196)
T PRK13170         56 QLRERELIDLIKA---CTQPVLGICLGMQLLGER   86 (196)
T ss_pred             HHHHcChHHHHHH---cCCCEEEECHHHHHHhhh
Confidence             111234445544   489999999999999977

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=96.43  E-value=0.01  Score=62.24  Aligned_cols=91  Identities=14%  Similarity=0.091  Sum_probs=66.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc--ccc
Q 012037           85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS--VRL  162 (472)
Q Consensus        85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~--~~l  162 (472)
                      .||+|.-.+-|+.. +..=++.|++.|+++..+++-.+                 ++.+  ++|+|+||||....  ..+
T Consensus       245 ~~Iava~d~afnFy-~~~~~~~L~~~g~~~~~~~~~~d-----------------~~l~--~~d~l~ipGG~~~~~~~~l  304 (449)
T TIGR00379       245 VRIAVAQDQAFNFY-YQDNLDALTHNAAELVPFSPLED-----------------TELP--DVDAVYIGGGFPELFAEEL  304 (449)
T ss_pred             cEEEEEechhhcee-HHHHHHHHHHCCCEEEEECCccC-----------------CCCC--CCCEEEeCCcHHHHHHHHH
Confidence            58999987755442 13345777788999988887532                 1223  68999999996422  235


Q ss_pred             cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ..+..+.+.|+++.++|++|.++|.| ..+|++.
T Consensus       305 ~~~~~~~~~i~~~~~~G~pv~g~CgG-~~~L~~~  337 (449)
T TIGR00379       305 SQNQALRDSIKTFIHQGLPIYGECGG-LMYLSQS  337 (449)
T ss_pred             HhhhHHHHHHHHHHHcCCCEEEEcHH-HHHHHhh
Confidence            55777899999999999999999996 5567664

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown

Probab=96.41  E-value=0.015  Score=58.76  Aligned_cols=93  Identities=16%  Similarity=0.261  Sum_probs=67.0

Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhC---CCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037          288 PRVLIPIANGSEEIEIVTIVDILRRA---KVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER  364 (472)
Q Consensus       288 ~~V~il~~~g~~~~e~~~~~d~l~~a---~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~  364 (472)
                      |+|+|.--+|.....+-..++.|++.   .|.|..++.+.           |..+ .+    ..++|++|+|||......
T Consensus         1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~~-----------l~~~-pw----~~~~~LlV~PGG~d~~y~   64 (367)
T PF09825_consen    1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTADE-----------LLNE-PW----QSKCALLVMPGGADLPYC   64 (367)
T ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHHH-----------hhcC-cc----ccCCcEEEECCCcchHHH
Confidence            57888888899999999999999863   47776654321           1111 12    246899999999732222


Q ss_pred             ccccHHHHHHHHHHHHcCCeEEEEchhHHHHH
Q 012037          365 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLH  396 (472)
Q Consensus       365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA  396 (472)
                      -.-+..-.+.||+|.++|.-..+||+|+++-.
T Consensus        65 ~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as   96 (367)
T PF09825_consen   65 RSLNGEGNRRIRQFVENGGGYLGICAGAYYAS   96 (367)
T ss_pred             HhhChHHHHHHHHHHHcCCcEEEECcchhhhc
Confidence            22355668899999999999999999998765

It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.

>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP)

Probab=96.40  E-value=0.0076  Score=50.50  Aligned_cols=88  Identities=17%  Similarity=0.294  Sum_probs=58.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch--hccc
Q 012037          289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA--ERLQ  366 (472)
Q Consensus       289 ~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~--~~~~  366 (472)
                      +|+|.--+|.+...+-.....|+..- .++.++.+.   +.         +..++    .++|.||+|||....  ..+.
T Consensus         1 ~v~VY~g~g~~~~~~~~~~~~L~~~~-~v~~~~~~~---I~---------~~~~~----~~ad~lVlPGGa~~~~~~~L~   63 (114)
T cd03144           1 NVLVYNGPGASPGSLKHLAELLRLYL-AVSTVTADE---LA---------VGPWE----SKTALLVVPGGADLPYCRALN   63 (114)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHhhcc-ceeeecHHH---Hh---------cCchh----hCCCEEEECCCChHHHHHHHH
Confidence            35666667888888888888887644 444333321   10         11111    468999999986322  2232


Q ss_pred             ccHHHHHHHHHHHHcCCeEEEEchhHHHH
Q 012037          367 KSRILKKLLKEQKVAGRIYGAVCSSPIVL  395 (472)
Q Consensus       367 ~~~~l~~~L~~~~~~g~~v~aic~G~~lL  395 (472)
                       ... .+.|+++.++|+++.+||.|+.+-
T Consensus        64 -~~g-~~~i~~~v~~g~p~LGIClGAy~a   90 (114)
T cd03144          64 -GKG-NRRIRNFVRNGGNYLGICAGAYLA   90 (114)
T ss_pred             -hhC-cHHHHHHHHCCCcEEEEecCccce
Confidence             223 788899889999999999999876

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.

>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []

Probab=96.38  E-value=0.0032  Score=56.28  Aligned_cols=52  Identities=29%  Similarity=0.206  Sum_probs=41.5

Q ss_pred             CCcccEEEEcCCcccc--ccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          144 HQVFDLIALPGGMPGS--VRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       144 ~~~~D~vivpGG~~~~--~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      +.++|+|++|||.+..  ..+.++..+.+.|+++.++|++|.++|.| ..+|.+.
T Consensus         5 ~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG-~~~Lg~~   58 (158)
T PF07685_consen    5 PPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGG-YQYLGES   58 (158)
T ss_pred             CCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchH-HHHHHHH
Confidence            4479999999997433  23556778999999999999999999996 5566664

Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process

>PHA03366 FGAM-synthase; Provisional

Probab=96.36  E-value=0.018  Score=67.50  Aligned_cols=100  Identities=12%  Similarity=0.024  Sum_probs=74.3

Q ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc-
Q 012037           82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV-  160 (472)
Q Consensus        82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~-  160 (472)
                      ....||+|+.++|.+-.  .....+|..+||++..+....=  .         ....     ..+|+.|++|||+...+ 
T Consensus      1026 ~~~prVaIl~~pG~N~~--~e~~~Af~~aGf~~~~v~~~dL--~---------~~~~-----l~~f~glv~~GGFS~gD~ 1087 (1304)
T PHA03366       1026 DKRHRVAVLLLPGCPGP--HALLAAFTNAGFDPYPVSIEEL--K---------DGTF-----LDEFSGLVIGGSSGAEDS 1087 (1304)
T ss_pred             CCCCeEEEEECCCCCCH--HHHHHHHHHcCCceEEEEeecC--C---------CCCc-----cccceEEEEcCCCCCccc
Confidence            34679999999997744  2457788889999988876531  1         0001     23789999999973222 


Q ss_pred             ---------cccCChHHHHHHHHHH-hcCCeEEEEch-hhHHhhhcCCCCC
Q 012037          161 ---------RLRDCEILKKITSKQA-EEKRLYGAICA-APAVTLLPWGLLR  200 (472)
Q Consensus       161 ---------~l~~~~~~~~~l~~~~-~~~k~I~aic~-g~~~lLa~aGlL~  200 (472)
                               .+..++.+.+.+++++ +.++.+.+||+ |-+ +|.+.|+|.
T Consensus      1088 l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q-~L~~lgll~ 1137 (1304)
T PHA03366       1088 YTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQ-ILFALKAVG 1137 (1304)
T ss_pred             ccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHH-HHHHcCCcc
Confidence                     2345788999999999 56999999999 966 899999994

>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

Probab=96.36  E-value=0.015  Score=53.59  Aligned_cols=75  Identities=13%  Similarity=0.174  Sum_probs=52.9

Q ss_pred             HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCe
Q 012037          305 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI  384 (472)
Q Consensus       305 ~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~  384 (472)
                      ..++.|+..|+++.++..+..               .++++...++|.|||-||++.+.+   .....++++++ +++++
T Consensus        14 ~~~~~l~~~g~~v~v~~~~~~---------------~~~~~~~~~~d~iilsgGpg~p~~---~~~~~~~i~~~-~~~~P   74 (188)
T TIGR00566        14 NLVQYFCELGAEVVVKRNDSL---------------TLQEIEALLPLLIVISPGPCTPNE---AGISLEAIRHF-AGKLP   74 (188)
T ss_pred             HHHHHHHHcCCceEEEECCCC---------------CHHHHHhcCCCEEEEcCCCCChhh---cchhHHHHHHh-ccCCC
Confidence            466777778888887765532               233332245899999998754432   23347788877 67899


Q ss_pred             EEEEchhHHHHHHc
Q 012037          385 YGAVCSSPIVLHKH  398 (472)
Q Consensus       385 v~aic~G~~lLA~a  398 (472)
                      |.+||-|-.+|+.+
T Consensus        75 vLGIC~G~Qll~~~   88 (188)
T TIGR00566        75 ILGVCLGHQAMGQA   88 (188)
T ss_pred             EEEECHHHHHHHHH
Confidence            99999999999865

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.

>PRK08007 para-aminobenzoate synthase component II; Provisional

Probab=96.33  E-value=0.012  Score=54.08  Aligned_cols=87  Identities=11%  Similarity=0.161  Sum_probs=59.2

Q ss_pred             EEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHH
Q 012037          292 IPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRIL  371 (472)
Q Consensus       292 il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l  371 (472)
                      |++-|.++.... .+++.|+..|.++.++..+..               +++++...++|.||+-||++.+.+.   ...
T Consensus         2 il~idn~Dsft~-nl~~~l~~~g~~v~v~~~~~~---------------~~~~~~~~~~d~iils~GPg~p~~~---~~~   62 (187)
T PRK08007          2 ILLIDNYDSFTW-NLYQYFCELGADVLVKRNDAL---------------TLADIDALKPQKIVISPGPCTPDEA---GIS   62 (187)
T ss_pred             EEEEECCCccHH-HHHHHHHHCCCcEEEEeCCCC---------------CHHHHHhcCCCEEEEcCCCCChHHC---Ccc
Confidence            344455544444 477888888999988765421               2334333468999999998655432   334


Q ss_pred             HHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          372 KKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       372 ~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      +++++. .+++.+|.+||-|..+|+.+
T Consensus        63 ~~~~~~-~~~~~PiLGIClG~Q~la~a   88 (187)
T PRK08007         63 LDVIRH-YAGRLPILGVCLGHQAMAQA   88 (187)
T ss_pred             HHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence            566665 46789999999999999876

>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

Probab=96.33  E-value=0.0099  Score=55.11  Aligned_cols=75  Identities=21%  Similarity=0.284  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc---ccccHHHHHHHHHH
Q 012037          302 EIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER---LQKSRILKKLLKEQ  378 (472)
Q Consensus       302 e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~---~~~~~~l~~~L~~~  378 (472)
                      .+..+.+.|+..|++++++..+                   +++  +++|.||+||+....+.   +.... ...+++++
T Consensus        10 n~~~l~~~l~~~g~~v~v~~~~-------------------~~l--~~~d~lii~G~~~~~~~~~~l~~~~-~~~l~~~~   67 (196)
T TIGR01855        10 NLGSVKRALKRVGAEPVVVKDS-------------------KEA--ELADKLILPGVGAFGAAMARLRENG-LDLFVELV   67 (196)
T ss_pred             HHHHHHHHHHHCCCcEEEEcCH-------------------HHh--ccCCEEEECCCCCHHHHHHHHHHcC-cHHHHHHH
Confidence            4566778888888888776521                   122  46899999995311111   11111 23444778


Q ss_pred             HHcCCeEEEEchhHHHHHHc
Q 012037          379 KVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       379 ~~~g~~v~aic~G~~lLA~a  398 (472)
                      .+.+++|.+||.|..+|+++
T Consensus        68 ~~~~~pvlGiC~G~Qll~~~   87 (196)
T TIGR01855        68 VRLGKPVLGICLGMQLLFER   87 (196)
T ss_pred             HhCCCCEEEECHHHHHhhhc
Confidence            88999999999999999998

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.

>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional

Probab=96.29  E-value=0.018  Score=67.47  Aligned_cols=101  Identities=12%  Similarity=0.079  Sum_probs=72.1

Q ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc--
Q 012037           83 PPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV--  160 (472)
Q Consensus        83 ~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~--  160 (472)
                      ...||+|+.++|.+-.  .....+|+.+|+++..+....  .....           .+  ..+|+++++|||+..-+  
T Consensus      1034 ~~pkv~il~~pG~N~~--~e~~~Af~~aG~~~~~v~~~d--l~~~~-----------~~--l~~~~~l~~~GGFS~gD~l 1096 (1290)
T PRK05297       1034 ARPKVAILREQGVNSH--VEMAAAFDRAGFDAIDVHMSD--LLAGR-----------VT--LEDFKGLVACGGFSYGDVL 1096 (1290)
T ss_pred             CCCeEEEEECCCCCCH--HHHHHHHHHcCCCeEEEEeec--CcCCC-----------CC--hhhCcEEEECCccCCcccc
Confidence            4579999999997643  245778889999988877653  11110           02  23799999999963222  


Q ss_pred             --------cccCChHHHHHHHHHH-hcCCeEEEEchhhHHhhhcCC-CCCC
Q 012037          161 --------RLRDCEILKKITSKQA-EEKRLYGAICAAPAVTLLPWG-LLRR  201 (472)
Q Consensus       161 --------~l~~~~~~~~~l~~~~-~~~k~I~aic~g~~~lLa~aG-lL~g  201 (472)
                              .+..++.+.+-+++++ +.++.+.+||+|- -+|.+.| |+.+
T Consensus      1097 gsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGf-Q~L~~lg~l~p~ 1146 (1290)
T PRK05297       1097 GAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGC-QMMSNLKEIIPG 1146 (1290)
T ss_pred             hHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHH-HHHHHhCCccCC
Confidence                    2334578888899977 8899999999965 4899997 6654

>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]

Probab=96.27  E-value=0.013  Score=53.67  Aligned_cols=88  Identities=20%  Similarity=0.195  Sum_probs=61.3

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcC-Cc--cccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPG-GM--PGSV  160 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpG-G~--~~~~  160 (472)
                      |++|+|+=+.--+.   ..+..+|+++|+++.+.....                   ++.  ..|.||+|| |.  ..+.
T Consensus         1 m~~i~IIDyg~GNL---~Sv~~Aler~G~~~~vs~d~~-------------------~i~--~AD~liLPGVGaf~~am~   56 (204)
T COG0118           1 MMMVAIIDYGSGNL---RSVKKALERLGAEVVVSRDPE-------------------EIL--KADKLILPGVGAFGAAMA   56 (204)
T ss_pred             CCEEEEEEcCcchH---HHHHHHHHHcCCeeEEecCHH-------------------HHh--hCCEEEecCCCCHHHHHH
Confidence            57888887765444   455788889998876554221                   222  589999998 32  1233


Q ss_pred             cccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCC
Q 012037          161 RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG  197 (472)
Q Consensus       161 ~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aG  197 (472)
                      .+... .+.+.|+++...+|++.+||-|-+ +|.+.+
T Consensus        57 ~L~~~-gl~~~i~~~~~~~kP~LGIClGMQ-lLfe~S   91 (204)
T COG0118          57 NLRER-GLIEAIKEAVESGKPFLGICLGMQ-LLFERS   91 (204)
T ss_pred             HHHhc-chHHHHHHHHhcCCCEEEEeHhHH-hhhhcc
Confidence            34433 789999999999999999999766 566544

>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E

Probab=96.25  E-value=0.018  Score=54.15  Aligned_cols=97  Identities=15%  Similarity=0.165  Sum_probs=67.1

Q ss_pred             CCCEEEEEeCCCCCHHH-HHHHHHHHHhC-CCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcc--
Q 012037          286 RMPRVLIPIANGSEEIE-IVTIVDILRRA-KVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG--  361 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e-~~~~~d~l~~a-~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~--  361 (472)
                      ..+||+++-......-| +......|.+. |++++.+..-.             .....+.+  .+.|+|++|||...  
T Consensus        30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~-------------~~~~~~~l--~~ad~I~l~GG~~~~~   94 (212)
T cd03146          30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFD-------------TEDPLDAL--LEADVIYVGGGNTFNL   94 (212)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccC-------------cccHHHHH--hcCCEEEECCchHHHH
Confidence            45688888877554333 56678889999 88877664321             11113344  67899999998521  


Q ss_pred             hhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          362 AERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       362 ~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      ...+ +...+.+.|++..++|++++++|.|+.++.+.
T Consensus        95 ~~~l-~~~~l~~~l~~~~~~g~~i~G~SAGa~i~~~~  130 (212)
T cd03146          95 LAQW-REHGLDAILKAALERGVVYIGWSAGSNCWFPS  130 (212)
T ss_pred             HHHH-HHcCHHHHHHHHHHCCCEEEEECHhHHhhCCC
Confidence            1112 22357788888889999999999999999884

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.

>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

Probab=96.23  E-value=0.016  Score=53.14  Aligned_cols=75  Identities=16%  Similarity=0.135  Sum_probs=51.8

Q ss_pred             HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCe
Q 012037          305 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI  384 (472)
Q Consensus       305 ~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~  384 (472)
                      ...+.|++.|++++++..+..             +..+.+.  .++|.||+.||.....   .+ ...+.+++...++++
T Consensus        13 ~~~~~l~~~G~~~~~~~~~~~-------------~~~~~~~--~~~dgvil~gG~~~~~---~~-~~~~~i~~~~~~~~P   73 (184)
T cd01743          13 NLVQYLRELGAEVVVVRNDEI-------------TLEELEL--LNPDAIVISPGPGHPE---DA-GISLEIIRALAGKVP   73 (184)
T ss_pred             HHHHHHHHcCCceEEEeCCCC-------------CHHHHhh--cCCCEEEECCCCCCcc---cc-hhHHHHHHHHhcCCC
Confidence            366888889999998877653             1111123  5699999988764322   12 245555555677899


Q ss_pred             EEEEchhHHHHHHc
Q 012037          385 YGAVCSSPIVLHKH  398 (472)
Q Consensus       385 v~aic~G~~lLA~a  398 (472)
                      |.+||-|..+|+.+
T Consensus        74 vlGIC~G~Qlla~~   87 (184)
T cd01743          74 ILGVCLGHQAIAEA   87 (184)
T ss_pred             EEEECHhHHHHHHH
Confidence            99999999999876

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese

>PRK07567 glutamine amidotransferase; Provisional

Probab=96.22  E-value=0.02  Score=54.98  Aligned_cols=97  Identities=12%  Similarity=0.055  Sum_probs=56.2

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCE---EEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQ---VTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV  160 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~---v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~  160 (472)
                      ||.|+|+-....+........+.|++.+..   ++++....+ .        ..    ..  +...||+|||.||..++.
T Consensus         1 m~~ililq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~----~~--~~~~~dgvIi~Gg~~~~~   65 (242)
T PRK07567          1 MKPFLLLSPRPEDEAADAEYAAFLRYTGLDPAELRRIRLDRE-P--------LP----DL--DLDDYSGVIVGGSPFNVS   65 (242)
T ss_pred             CCcEEEEecCCCcccccchHHHHHHhcCCCccceEEEecccC-C--------CC----CC--CHhhccEEEEcCCCCcCC
Confidence            456777766554443235667777777654   444433322 0        00    01  223799999999953332


Q ss_pred             cc--cCCh-------HHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          161 RL--RDCE-------ILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       161 ~l--~~~~-------~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ..  ...+       .+.++++...+.+++|.+||-|.. +|+.+
T Consensus        66 d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Q-lla~a  109 (242)
T PRK07567         66 DPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVG-TLGHH  109 (242)
T ss_pred             CCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHH-HHHHH
Confidence            21  1122       223455555589999999999765 67766

>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=96.18  E-value=0.015  Score=53.65  Aligned_cols=81  Identities=17%  Similarity=0.194  Sum_probs=54.0

Q ss_pred             HHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc--------------ccccH
Q 012037          304 VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER--------------LQKSR  369 (472)
Q Consensus       304 ~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~--------------~~~~~  369 (472)
                      ...++.|+..|+++.++..... .           + .+.+. ...+|.||+|||......              ...+.
T Consensus        22 ~~~~~~l~~~G~~~~iv~~~~~-~-----------~-~~~~~-l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~   87 (189)
T cd01745          22 QYYVDAVRKAGGLPVLLPPVDD-E-----------E-DLEQY-LELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDA   87 (189)
T ss_pred             HHHHHHHHHCCCEEEEeCCCCC-h-----------H-HHHHH-HhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHH
Confidence            3567788888888776654432 0           0 11111 156899999999632111              11223


Q ss_pred             HHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          370 ILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       370 ~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      ...++++++.+.+++|.+||.|..+|+.+
T Consensus        88 ~~~~~~~~~~~~~~PilgiC~G~Q~l~~~  116 (189)
T cd01745          88 FELALLRAALERGKPILGICRGMQLLNVA  116 (189)
T ss_pred             HHHHHHHHHHHCCCCEEEEcchHHHHHHH
Confidence            45789999999999999999999998765

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]

Probab=96.17  E-value=0.02  Score=52.33  Aligned_cols=88  Identities=26%  Similarity=0.327  Sum_probs=62.7

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcC-CCcc--hh
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPG-GVAG--AE  363 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpG-G~~~--~~  363 (472)
                      |++|+|+=|.--++.   .+...|.++|+++.+...                   .+++  .+.|.||+|| |...  ..
T Consensus         1 m~~i~IIDyg~GNL~---Sv~~Aler~G~~~~vs~d-------------------~~~i--~~AD~liLPGVGaf~~am~   56 (204)
T COG0118           1 MMMVAIIDYGSGNLR---SVKKALERLGAEVVVSRD-------------------PEEI--LKADKLILPGVGAFGAAMA   56 (204)
T ss_pred             CCEEEEEEcCcchHH---HHHHHHHHcCCeeEEecC-------------------HHHH--hhCCEEEecCCCCHHHHHH
Confidence            578888877755555   455667778877754322                   2334  5689999999 5321  23


Q ss_pred             cccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC
Q 012037          364 RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG  399 (472)
Q Consensus       364 ~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG  399 (472)
                      .+. ...+.+.|++....++++.+||-|..+|.+.+
T Consensus        57 ~L~-~~gl~~~i~~~~~~~kP~LGIClGMQlLfe~S   91 (204)
T COG0118          57 NLR-ERGLIEAIKEAVESGKPFLGICLGMQLLFERS   91 (204)
T ss_pred             HHH-hcchHHHHHHHHhcCCCEEEEeHhHHhhhhcc
Confidence            333 33789999999999999999999999998654

>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase

Probab=96.16  E-value=0.028  Score=65.51  Aligned_cols=99  Identities=12%  Similarity=0.047  Sum_probs=73.7

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc----
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS----  159 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~----  159 (472)
                      ..||+|+.++|.+-.  .....+|+.+||++..+....=  ..   |      ..+     .+|+.|+++||+...    
T Consensus       929 ~p~VaIl~~pG~N~~--~e~~~Af~~aGf~~~~v~~~dl--~~---~------~~l-----~~f~glv~~Ggfsy~D~lg  990 (1202)
T TIGR01739       929 RHQVAVLLLPGQSVP--HGLLAALTNAGFDPRIVSITEL--KK---T------DFL-----DTFSGLIIGGASGTLDSEV  990 (1202)
T ss_pred             CCeEEEEeCCCCCCH--HHHHHHHHHcCCceEEEEeccC--CC---C------Cch-----hheEEEEEcCcCCCCccch
Confidence            569999999997744  2557788899999988887641  11   0      011     269999999986321    


Q ss_pred             ------ccccCChHHHHHHHHHH-hcCCeEEEEch-hhHHhhhcCCCCCC
Q 012037          160 ------VRLRDCEILKKITSKQA-EEKRLYGAICA-APAVTLLPWGLLRR  201 (472)
Q Consensus       160 ------~~l~~~~~~~~~l~~~~-~~~k~I~aic~-g~~~lLa~aGlL~g  201 (472)
                            ..+..++.+.+.+++++ +.++.+.+||+ |-+ +|.+.|++..
T Consensus       991 sg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q-~L~~lg~l~~ 1039 (1202)
T TIGR01739       991 GARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQ-LLLALNIVGY 1039 (1202)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHH-HHHHcCCCcC
Confidence                  22345788899999999 56999999999 966 8999999853

This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.

>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed

Probab=96.15  E-value=0.021  Score=57.94  Aligned_cols=88  Identities=14%  Similarity=0.080  Sum_probs=63.7

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ  366 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~  366 (472)
                      .+||+++=+ |+.    ...++.|.+.|+++.++..+.                +++++...++|.||++||++.+..  
T Consensus       177 ~~~I~viD~-G~k----~nivr~L~~~G~~v~vvp~~~----------------~~~~i~~~~~DGIvLSgGPgdp~~--  233 (360)
T PRK12564        177 KYKVVAIDF-GVK----RNILRELAERGCRVTVVPATT----------------TAEEILALNPDGVFLSNGPGDPAA--  233 (360)
T ss_pred             CCEEEEEeC-CcH----HHHHHHHHHCCCEEEEEeCCC----------------CHHHHHhcCCCEEEEeCCCCChHH--
Confidence            357777754 432    357888889999988775442                123332236899999999754432  


Q ss_pred             ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          367 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       367 ~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                       .+..+++++++.+++++|.+||-|..+|+.+
T Consensus       234 -~~~~~~~i~~~~~~~~PilGIClG~QlLa~a  264 (360)
T PRK12564        234 -LDYAIEMIRELLEKKIPIFGICLGHQLLALA  264 (360)
T ss_pred             -HHHHHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence             3677889999988899999999999998754

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=96.14  E-value=0.037  Score=59.08  Aligned_cols=89  Identities=16%  Similarity=0.149  Sum_probs=62.5

Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037          286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  365 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~  365 (472)
                      .+++|+|+=|-.-+..++   ...|+..++++.++..                   .+++  .++|.||+||+......+
T Consensus         5 ~~~~i~iiDyG~GN~~sl---~~al~~~G~~v~~v~~-------------------~~~l--~~~D~lIlpG~gs~~~~m   60 (538)
T PLN02617          5 ADSEVTLLDYGAGNVRSV---RNAIRHLGFTIKDVQT-------------------PEDI--LNADRLIFPGVGAFGSAM   60 (538)
T ss_pred             CCCeEEEEECCCCCHHHH---HHHHHHCCCeEEEECC-------------------hhhh--ccCCEEEECCCCCHHHHH
Confidence            457888887776666555   5667778888866531                   1233  578999999964211111


Q ss_pred             --cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          366 --QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       366 --~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                        ..+..+.+.|+++.+.++++.+||.|..+|+++
T Consensus        61 ~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~   95 (538)
T PLN02617         61 DVLNNRGMAEALREYIQNDRPFLGICLGLQLLFES   95 (538)
T ss_pred             HHHHHcCHHHHHHHHHHcCCCEEEECHHHHHHhhh
Confidence              122347788999889999999999999999974

>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=96.12  E-value=0.013  Score=54.31  Aligned_cols=83  Identities=13%  Similarity=0.009  Sum_probs=49.8

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc-
Q 012037           85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR-  163 (472)
Q Consensus        85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~-  163 (472)
                      |+|+|+=+..-...+   +...|++.|++++++...                   ++..  .+|.||+||. +...... 
T Consensus         1 m~i~iid~g~gn~~s---~~~~l~~~g~~~~~v~~~-------------------~~~~--~~d~iIlPG~-G~~~~~~~   55 (196)
T PRK13170          1 MNVVIIDTGCANLSS---VKFAIERLGYEPVVSRDP-------------------DVIL--AADKLFLPGV-GTAQAAMD   55 (196)
T ss_pred             CeEEEEeCCCchHHH---HHHHHHHCCCeEEEECCH-------------------HHhC--CCCEEEECCC-CchHHHHH
Confidence            467766555444444   455888889888877422                   1122  5789999994 1221111 


Q ss_pred             --CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          164 --DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       164 --~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                        ....+.++++   +.+++|.+||.|.. +|+.+
T Consensus        56 ~l~~~~l~~~i~---~~~~PilGIClG~Q-ll~~~   86 (196)
T PRK13170         56 QLRERELIDLIK---ACTQPVLGICLGMQ-LLGER   86 (196)
T ss_pred             HHHHcChHHHHH---HcCCCEEEECHHHH-HHhhh
Confidence              1112334444   45899999999755 67766

>PLN02335 anthranilate synthase

Probab=96.11  E-value=0.025  Score=53.55  Aligned_cols=91  Identities=7%  Similarity=0.015  Sum_probs=60.5

Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037          286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  365 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~  365 (472)
                      ..++|+|+  | +.+.-...+.+.|++.|++++++..+..               .++++...++|.|||-||+..+...
T Consensus        17 ~~~~ilvi--D-~~dsft~~i~~~L~~~g~~~~v~~~~~~---------------~~~~~~~~~~d~iVisgGPg~p~d~   78 (222)
T PLN02335         17 QNGPIIVI--D-NYDSFTYNLCQYMGELGCHFEVYRNDEL---------------TVEELKRKNPRGVLISPGPGTPQDS   78 (222)
T ss_pred             ccCcEEEE--E-CCCCHHHHHHHHHHHCCCcEEEEECCCC---------------CHHHHHhcCCCEEEEcCCCCChhhc
Confidence            45678887  3 3233344688999999999998855321               2332322468999999998544322


Q ss_pred             cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                         ....+++++ ...+.+|.+||-|..+|+.+
T Consensus        79 ---~~~~~~~~~-~~~~~PiLGIClG~QlLa~a  107 (222)
T PLN02335         79 ---GISLQTVLE-LGPLVPLFGVCMGLQCIGEA  107 (222)
T ss_pred             ---cchHHHHHH-hCCCCCEEEecHHHHHHHHH
Confidence               123556654 34568999999999999864

>PRK05637 anthranilate synthase component II; Provisional

Probab=96.08  E-value=0.041  Score=51.53  Aligned_cols=89  Identities=18%  Similarity=0.171  Sum_probs=58.2

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ  366 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~  366 (472)
                      |+||+++=+.+..   ...+++.|++.|++++++..+-                .++++....+|.||+-||+..+..  
T Consensus         1 ~~~il~iD~~dsf---~~nl~~~l~~~g~~~~v~~~~~----------------~~~~l~~~~~~~iIlsgGPg~~~d--   59 (208)
T PRK05637          1 MTHVVLIDNHDSF---VYNLVDAFAVAGYKCTVFRNTV----------------PVEEILAANPDLICLSPGPGHPRD--   59 (208)
T ss_pred             CCEEEEEECCcCH---HHHHHHHHHHCCCcEEEEeCCC----------------CHHHHHhcCCCEEEEeCCCCCHHH--
Confidence            4566666442221   2347888999999998886542                123332246899999888754432  


Q ss_pred             ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          367 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       367 ~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                       .....++++... .+.+|.+||-|..+|+.+
T Consensus        60 -~~~~~~li~~~~-~~~PiLGIClG~Qlla~a   89 (208)
T PRK05637         60 -AGNMMALIDRTL-GQIPLLGICLGFQALLEH   89 (208)
T ss_pred             -hhHHHHHHHHHh-CCCCEEEEcHHHHHHHHH
Confidence             223356665443 579999999999999976

>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP)

Probab=96.03  E-value=0.014  Score=48.84  Aligned_cols=88  Identities=22%  Similarity=0.210  Sum_probs=58.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc--ccccc
Q 012037           86 KVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG--SVRLR  163 (472)
Q Consensus        86 kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~--~~~l~  163 (472)
                      +|+|.-.+|.+...+......|+... .++.++.+.   +.         +..++    ..+|.||+|||...  +..+.
T Consensus         1 ~v~VY~g~g~~~~~~~~~~~~L~~~~-~v~~~~~~~---I~---------~~~~~----~~ad~lVlPGGa~~~~~~~L~   63 (114)
T cd03144           1 NVLVYNGPGASPGSLKHLAELLRLYL-AVSTVTADE---LA---------VGPWE----SKTALLVVPGGADLPYCRALN   63 (114)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHhhcc-ceeeecHHH---Hh---------cCchh----hCCCEEEECCCChHHHHHHHH
Confidence            47788888999999888888888754 444444331   11         11111    36999999998422  22233


Q ss_pred             CChHHHHHHHHHHhcCCeEEEEchhhHHhhh
Q 012037          164 DCEILKKITSKQAEEKRLYGAICAAPAVTLL  194 (472)
Q Consensus       164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa  194 (472)
                      .. . .+.|+++.++++++.+||.| ++ ++
T Consensus        64 ~~-g-~~~i~~~v~~g~p~LGIClG-Ay-~a   90 (114)
T cd03144          64 GK-G-NRRIRNFVRNGGNYLGICAG-AY-LA   90 (114)
T ss_pred             hh-C-cHHHHHHHHCCCcEEEEecC-cc-ce
Confidence            22 3 78888888999999999996 53 44

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.

>PRK05670 anthranilate synthase component II; Provisional

Probab=95.98  E-value=0.022  Score=52.40  Aligned_cols=80  Identities=19%  Similarity=0.165  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHH
Q 012037          300 EIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQK  379 (472)
Q Consensus       300 ~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~  379 (472)
                      +.-.....+.|++.|++++++..+.. .           ...+++   .++|.||+.||...+..   .....++|+++ 
T Consensus         9 d~f~~~i~~~l~~~g~~~~v~~~~~~-~-----------~~~~~~---~~~dglIlsgGpg~~~d---~~~~~~~l~~~-   69 (189)
T PRK05670          9 DSFTYNLVQYLGELGAEVVVYRNDEI-T-----------LEEIEA---LNPDAIVLSPGPGTPAE---AGISLELIREF-   69 (189)
T ss_pred             CchHHHHHHHHHHCCCcEEEEECCCC-C-----------HHHHHh---CCCCEEEEcCCCCChHH---cchHHHHHHHh-
Confidence            33455678889999999998877642 0           111222   34899999888754432   23456677764 


Q ss_pred             HcCCeEEEEchhHHHHHHc
Q 012037          380 VAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       380 ~~g~~v~aic~G~~lLA~a  398 (472)
                      .++++|.+||-|..+|+.+
T Consensus        70 ~~~~PvLGIClG~Qlla~a   88 (189)
T PRK05670         70 AGKVPILGVCLGHQAIGEA   88 (189)
T ss_pred             cCCCCEEEECHHHHHHHHH
Confidence            5678999999999999865

>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

Probab=95.94  E-value=0.03  Score=51.02  Aligned_cols=75  Identities=16%  Similarity=0.115  Sum_probs=49.4

Q ss_pred             HHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCC
Q 012037          304 VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGR  383 (472)
Q Consensus       304 ~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~  383 (472)
                      ..+.+.|++.|++++++..+.+                .++....++|.||++||...... .....+.   +...+.++
T Consensus        12 ~~~~~~l~~~G~~~~~~~~~~~----------------~~~~~~~~~dgvIl~Gg~~~~~~-~~~~~~~---~~~~~~~~   71 (181)
T cd01742          12 HLIARRVRELGVYSEILPNTTP----------------LEEIKLKNPKGIILSGGPSSVYE-EDAPRVD---PEIFELGV   71 (181)
T ss_pred             HHHHHHHHhcCceEEEecCCCC----------------hhhhcccCCCEEEECCCcccccc-cccchhh---HHHHhcCC
Confidence            3468888888988887765432                11112267999999999642211 1112333   33445699


Q ss_pred             eEEEEchhHHHHHHc
Q 012037          384 IYGAVCSSPIVLHKH  398 (472)
Q Consensus       384 ~v~aic~G~~lLA~a  398 (472)
                      ++.+||-|..+|+.+
T Consensus        72 PilGIC~G~Qll~~~   86 (181)
T cd01742          72 PVLGICYGMQLIAKA   86 (181)
T ss_pred             CEEEEcHHHHHHHHh
Confidence            999999999999985

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=95.94  E-value=0.02  Score=60.21  Aligned_cols=46  Identities=26%  Similarity=0.330  Sum_probs=33.9

Q ss_pred             CcccEEEEcCCCcchh-cccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          348 SVYDLIILPGGVAGAE-RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       348 ~~~D~livpGG~~~~~-~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      .++|+||+|||..... .+  ...+.++|+++   |++|.+||.|-.+|++.
T Consensus        35 ~~~D~lILPGG~~~~~~~l--~~~l~~~i~~~---g~pvlGICgG~QmLg~~   81 (476)
T PRK06278         35 KDLDGLIIPGGSLVESGSL--TDELKKEILNF---DGYIIGICSGFQILSEK   81 (476)
T ss_pred             ccCCEEEECCCchhhcchH--HHHHHHHHHHc---CCeEEEEcHHHHhcccc
Confidence            5789999999852101 11  24566666665   99999999999999987

>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=95.88  E-value=0.022  Score=52.92  Aligned_cols=74  Identities=19%  Similarity=0.189  Sum_probs=49.6

Q ss_pred             HHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc--cCChHHHHHHHHHHhc
Q 012037          101 VIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL--RDCEILKKITSKQAEE  178 (472)
Q Consensus       101 ~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l--~~~~~~~~~l~~~~~~  178 (472)
                      ......|++.|++++++...                   ++..  ++|.||+||+.......  .....+.++|+++.+.
T Consensus        13 ~~~~~~l~~~g~~v~~~~~~-------------------~~l~--~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~   71 (199)
T PRK13181         13 RSVANALKRLGVEAVVSSDP-------------------EEIA--GADKVILPGVGAFGQAMRSLRESGLDEALKEHVEK   71 (199)
T ss_pred             HHHHHHHHHCCCcEEEEcCh-------------------HHhc--cCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHC
Confidence            44466888889888776211                   1222  68999999962211111  1123467889999999


Q ss_pred             CCeEEEEchhhHHhhhcC
Q 012037          179 KRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       179 ~k~I~aic~g~~~lLa~a  196 (472)
                      +++|.+||.|-. +|+.+
T Consensus        72 ~~PvlGiC~G~Q-ll~~~   88 (199)
T PRK13181         72 KQPVLGICLGMQ-LLFES   88 (199)
T ss_pred             CCCEEEECHhHH-Hhhhh
Confidence            999999999755 78876

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=95.86  E-value=0.038  Score=58.99  Aligned_cols=88  Identities=11%  Similarity=0.074  Sum_probs=59.7

Q ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc-
Q 012037           83 PPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR-  161 (472)
Q Consensus        83 ~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~-  161 (472)
                      .+++|+|+=+..=+..   .....|++.|+++.++...                   .+.  ..+|.||+||+. .... 
T Consensus         5 ~~~~i~iiDyG~GN~~---sl~~al~~~G~~v~~v~~~-------------------~~l--~~~D~lIlpG~g-s~~~~   59 (538)
T PLN02617          5 ADSEVTLLDYGAGNVR---SVRNAIRHLGFTIKDVQTP-------------------EDI--LNADRLIFPGVG-AFGSA   59 (538)
T ss_pred             CCCeEEEEECCCCCHH---HHHHHHHHCCCeEEEECCh-------------------hhh--ccCCEEEECCCC-CHHHH
Confidence            4678887766544444   4478888899888665321                   122  269999999973 3211 


Q ss_pred             --ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          162 --LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       162 --l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                        ...+..+.+.|+++.+.++++.+||.|.+ +|+++
T Consensus        60 m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~Q-lLa~~   95 (538)
T PLN02617         60 MDVLNNRGMAEALREYIQNDRPFLGICLGLQ-LLFES   95 (538)
T ss_pred             HHHHHHcCHHHHHHHHHHcCCCEEEECHHHH-HHhhh
Confidence              11223467788999999999999999755 78864

>PRK00784 cobyric acid synthase; Provisional

Probab=95.85  E-value=0.018  Score=61.08  Aligned_cols=88  Identities=17%  Similarity=0.073  Sum_probs=62.9

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHh-CCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc-
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRR-AGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR-  161 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~-ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~-  161 (472)
                      +.||+|.-+|...-.   .=++.|++ +|+++.++++..                   +.+  ++|+|++|||...... 
T Consensus       251 ~~~i~v~~~~~a~~f---~nl~~l~~~~g~~v~~~s~~~-------------------~l~--~~d~lilpGg~~~~~~~  306 (488)
T PRK00784        251 ALRIAVIRLPRISNF---TDFDPLRAEPGVDVRYVRPGE-------------------PLP--DADLVILPGSKNTIADL  306 (488)
T ss_pred             ceEEEEEeCCCcCCc---cChHHHhhcCCCeEEEECCcc-------------------ccc--cCCEEEECCccchHHHH
Confidence            358999997743222   34677877 899988887631                   223  5899999999632222 


Q ss_pred             -ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          162 -LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       162 -l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                       +..+..+.+.|+++.+.|++|.++|.| ..+|++.
T Consensus       307 ~~~~~~~l~~~i~~~~~~g~pilg~C~G-~~~L~~~  341 (488)
T PRK00784        307 AWLRESGWDEAIRAHARRGGPVLGICGG-YQMLGRR  341 (488)
T ss_pred             HHHHHcCHHHHHHHHHHcCCeEEEECHH-HHHHhhh
Confidence             334556888999999999999999996 5467765

>PRK13566 anthranilate synthase; Provisional

Probab=95.84  E-value=0.062  Score=59.44  Aligned_cols=92  Identities=14%  Similarity=0.126  Sum_probs=68.3

Q ss_pred             cCCCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh
Q 012037          284 FDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE  363 (472)
Q Consensus       284 ~~~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~  363 (472)
                      ....++|+|+=+..   .-...+.+.|+..|+++.++..+..             +..++.   .++|.|||-||.+.+.
T Consensus       523 ~~~g~~IlvID~~d---sf~~~l~~~Lr~~G~~v~vv~~~~~-------------~~~~~~---~~~DgVVLsgGpgsp~  583 (720)
T PRK13566        523 VGEGKRVLLVDHED---SFVHTLANYFRQTGAEVTTVRYGFA-------------EEMLDR---VNPDLVVLSPGPGRPS  583 (720)
T ss_pred             CCCCCEEEEEECCC---chHHHHHHHHHHCCCEEEEEECCCC-------------hhHhhh---cCCCEEEECCCCCChh
Confidence            34567888887664   3366888999999999998877642             111222   4689999987764332


Q ss_pred             cccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          364 RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       364 ~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                          +..+.+++++..+++++|.+||-|..+|+.+
T Consensus       584 ----d~~~~~lI~~a~~~~iPILGIClG~QlLa~a  614 (720)
T PRK13566        584 ----DFDCKATIDAALARNLPIFGVCLGLQAIVEA  614 (720)
T ss_pred             ----hCCcHHHHHHHHHCCCcEEEEehhHHHHHHH
Confidence                2346799999999999999999999999876

>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=95.81  E-value=0.091  Score=48.71  Aligned_cols=92  Identities=20%  Similarity=0.087  Sum_probs=57.5

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccC
Q 012037           85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD  164 (472)
Q Consensus        85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~  164 (472)
                      ++|+|+=+.+ +.  .-.+...+++.|+....+-+...               +........+|++||.||. ......+
T Consensus         2 ~~ilIld~g~-q~--~~li~r~~re~g~v~~e~~~~~~---------------~~~~~~~~~~~giIlsGgp-~sv~~~~   62 (198)
T COG0518           2 RKILILDFGG-QY--LGLIARRLRELGYVYSEIVPYTG---------------DAEELPLDSPDGIIISGGP-MSVYDED   62 (198)
T ss_pred             cEEEEEeCCC-cH--hHHHHHHHHHcCCceEEEEeCCC---------------CcccccccCCCEEEEcCCC-CCCcccc
Confidence            3455553333 22  23456677788864444333322               1223333356999999994 3333334


Q ss_pred             --ChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          165 --CEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       165 --~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                        .+...+||++....+|+|.+||-|.+ +||.+
T Consensus        63 ~w~~~~~~~i~~~~~p~~pvLGIC~G~Q-l~A~~   95 (198)
T COG0518          63 PWLPREKDLIKDAGVPGKPVLGICLGHQ-LLAKA   95 (198)
T ss_pred             ccchhHHHHHHHhCCCCCCEEEEChhHH-HHHHH
Confidence              57889999999999999999999766 66654

>PRK08857 para-aminobenzoate synthase component II; Provisional

Probab=95.80  E-value=0.033  Score=51.50  Aligned_cols=85  Identities=8%  Similarity=0.090  Sum_probs=56.6

Q ss_pred             eCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHH
Q 012037          294 IANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKK  373 (472)
Q Consensus       294 ~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~  373 (472)
                      +-|..+.... ..++.|+..|++++++..+..               .+.++...++|.+++-||+..+.+   +....+
T Consensus         4 ~id~~dsft~-~~~~~l~~~g~~~~~~~~~~~---------------~~~~~~~~~~~~iilsgGp~~~~~---~~~~~~   64 (193)
T PRK08857          4 MIDNYDSFTY-NLYQYFCELGAQVKVVRNDEI---------------DIDGIEALNPTHLVISPGPCTPNE---AGISLQ   64 (193)
T ss_pred             EEECCCCcHH-HHHHHHHHCCCcEEEEECCCC---------------CHHHHhhCCCCEEEEeCCCCChHH---CcchHH
Confidence            3344433333 477888999999998876632               112111135789999998754432   233456


Q ss_pred             HHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          374 LLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       374 ~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      +++. .+++.+|.+||-|..+|+.+
T Consensus        65 ~i~~-~~~~~PiLGIClG~Qlia~a   88 (193)
T PRK08857         65 AIEH-FAGKLPILGVCLGHQAIAQV   88 (193)
T ss_pred             HHHH-hcCCCCEEEEcHHHHHHHHH
Confidence            7765 47889999999999999875

>PRK07765 para-aminobenzoate synthase component II; Provisional

Probab=95.79  E-value=0.034  Score=52.34  Aligned_cols=79  Identities=14%  Similarity=0.107  Sum_probs=54.5

Q ss_pred             HHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCC
Q 012037          101 VIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKR  180 (472)
Q Consensus       101 ~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k  180 (472)
                      ....+.|++.|+++.++..+.. ..         .+  ..+. ...||+|||.||...+.   ++....+|+++..++++
T Consensus        14 ~~~~~~l~~~G~~~~~~~~~~~-~~---------~~--~~~~-~~~~dgliisGGp~~~~---~~~~~~~~i~~~~~~~~   77 (214)
T PRK07765         14 FNLVQYLGQLGVEAEVWRNDDP-RL---------AD--EAAV-AAQFDGVLLSPGPGTPE---RAGASIDMVRACAAAGT   77 (214)
T ss_pred             HHHHHHHHHcCCcEEEEECCCc-CH---------HH--HHHh-hcCCCEEEECCCCCChh---hcchHHHHHHHHHhCCC
Confidence            3567889999999999876632 00         11  1111 12699999999943322   33556789999999999


Q ss_pred             eEEEEchhhHHhhhcC
Q 012037          181 LYGAICAAPAVTLLPW  196 (472)
Q Consensus       181 ~I~aic~g~~~lLa~a  196 (472)
                      +|.+||-|.+ +|+.+
T Consensus        78 PiLGIC~G~Q-lla~a   92 (214)
T PRK07765         78 PLLGVCLGHQ-AIGVA   92 (214)
T ss_pred             CEEEEccCHH-HHHHH
Confidence            9999999866 55543

>PRK05380 pyrG CTP synthetase; Validated

Probab=95.75  E-value=0.063  Score=56.64  Aligned_cols=149  Identities=12%  Similarity=0.112  Sum_probs=90.5

Q ss_pred             eCCEEeCCCCCChHHHHHHHHHHHhCchhHHhhhhccccccC-Ccch-hhhcccccccccCCCCEEEEEeCC-CCCHHHH
Q 012037          227 SGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNA-DNSL-KKEEFNEVEWFFDRMPRVLIPIAN-GSEEIEI  303 (472)
Q Consensus       227 Dg~iiTa~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~~~-~~~~-~~~~~n~~~~~~~~~~~V~il~~~-g~~~~e~  303 (472)
                      ..+++.+-...+..+.=+.+-+    +.+.+.+.+.|-++.. ...+ |.+-.+.+. ......+|+++-=- ...+ .+
T Consensus       231 ~~~vi~~~d~~~iy~vPl~l~~----q~~~~~i~~~l~l~~~~~~~~~w~~~~~~~~-~~~~~v~IalVGKY~~l~D-aY  304 (533)
T PRK05380        231 EEAVISAPDVDSIYEVPLLLHE----QGLDDIVLERLGLEAPEPDLSEWEELVERLK-NPKGEVTIALVGKYVELPD-AY  304 (533)
T ss_pred             HHHEEEcCCCccHHhhhHHHHH----CCCHHHHHHHcCCCCCCCCHHHHHHHHHHHh-CCCCceEEEEEeCccCCcH-HH
Confidence            4578888877776666655544    4556666777777531 1211 222222111 12344678877543 3333 36


Q ss_pred             HHHHHHHHhCC----CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHH
Q 012037          304 VTIVDILRRAK----VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQK  379 (472)
Q Consensus       304 ~~~~d~l~~a~----~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~  379 (472)
                      -.+.+.|+.++    .++++.-.+.. .+...        ...+.+  ..+|.|++|||.+ ..   ..+..+++++...
T Consensus       305 ~Sv~eAL~hag~~~~~~v~i~wIdse-~l~~~--------~~~~~L--~~~DGIIlpGGfG-~~---~~~g~i~~i~~a~  369 (533)
T PRK05380        305 KSVIEALKHAGIANDVKVNIKWIDSE-DLEEE--------NVAELL--KGVDGILVPGGFG-ER---GIEGKILAIRYAR  369 (533)
T ss_pred             HHHHHHHHHHHHHcCCeeEEEEEChh-hccCc--------chhhHh--hcCCEEEecCCCC-cc---ccccHHHHHHHHH
Confidence            77888888876    45555555543 22211        112223  6789999999974 22   2345678888888


Q ss_pred             HcCCeEEEEchhHHHHH
Q 012037          380 VAGRIYGAVCSSPIVLH  396 (472)
Q Consensus       380 ~~g~~v~aic~G~~lLA  396 (472)
                      ++++++.+||-|..+++
T Consensus       370 e~~iPiLGIClGmQll~  386 (533)
T PRK05380        370 ENNIPFLGICLGMQLAV  386 (533)
T ss_pred             HCCCcEEEEchHHHHHH
Confidence            99999999999998765

>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

Probab=95.74  E-value=0.016  Score=53.66  Aligned_cols=75  Identities=19%  Similarity=0.197  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc---ccCChHHHHHHHHH
Q 012037           99 EAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR---LRDCEILKKITSKQ  175 (472)
Q Consensus        99 e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~---l~~~~~~~~~l~~~  175 (472)
                      .+..+.+.|+..|++++++..+.                   +.  .++|.|++||+......   +.... ...+++++
T Consensus        10 n~~~l~~~l~~~g~~v~v~~~~~-------------------~l--~~~d~lii~G~~~~~~~~~~l~~~~-~~~l~~~~   67 (196)
T TIGR01855        10 NLGSVKRALKRVGAEPVVVKDSK-------------------EA--ELADKLILPGVGAFGAAMARLRENG-LDLFVELV   67 (196)
T ss_pred             HHHHHHHHHHHCCCcEEEEcCHH-------------------Hh--ccCCEEEECCCCCHHHHHHHHHHcC-cHHHHHHH
Confidence            45677888899898888776220                   12  26999999995211111   11111 33455888


Q ss_pred             HhcCCeEEEEchhhHHhhhcC
Q 012037          176 AEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       176 ~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ++.+++|.+||.|.+ +|+.+
T Consensus        68 ~~~~~pvlGiC~G~Q-ll~~~   87 (196)
T TIGR01855        68 VRLGKPVLGICLGMQ-LLFER   87 (196)
T ss_pred             HhCCCCEEEECHHHH-Hhhhc
Confidence            899999999999755 78887

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.

>PRK00758 GMP synthase subunit A; Validated

Probab=95.73  E-value=0.034  Score=50.89  Aligned_cols=68  Identities=22%  Similarity=0.292  Sum_probs=47.3

Q ss_pred             HHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcc-cEEEEcCCCcchhcccccHHHHHHHHHHHHcCCe
Q 012037          306 IVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVY-DLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI  384 (472)
Q Consensus       306 ~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~-D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~  384 (472)
                      +.+.|++.|+++.++..+.                ..+++  .++ |.|+++||. ...   ....+.+||+   +.+++
T Consensus        15 i~~~l~~~g~~~~~~~~~~----------------~~~~l--~~~~dgivi~Gg~-~~~---~~~~~~~~l~---~~~~P   69 (184)
T PRK00758         15 IHRTLRYLGVDAKIIPNTT----------------PVEEI--KAFEDGLILSGGP-DIE---RAGNCPEYLK---ELDVP   69 (184)
T ss_pred             HHHHHHHcCCcEEEEECCC----------------CHHHH--hhcCCEEEECCCC-Chh---hccccHHHHH---hCCCC
Confidence            4677888888877665332                12333  446 999999996 222   2234556776   45899


Q ss_pred             EEEEchhHHHHHHc
Q 012037          385 YGAVCSSPIVLHKH  398 (472)
Q Consensus       385 v~aic~G~~lLA~a  398 (472)
                      |.+||-|..+|+.+
T Consensus        70 ilGIC~G~Q~L~~a   83 (184)
T PRK00758         70 ILGICLGHQLIAKA   83 (184)
T ss_pred             EEEEeHHHHHHHHh
Confidence            99999999999976

>PRK05282 (alpha)-aspartyl dipeptidase; Validated

Probab=95.72  E-value=0.051  Score=51.68  Aligned_cols=95  Identities=14%  Similarity=0.069  Sum_probs=64.6

Q ss_pred             CCCEEEEEeCCCC--CHHH-HHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch
Q 012037          286 RMPRVLIPIANGS--EEIE-IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA  362 (472)
Q Consensus       286 ~~~~V~il~~~g~--~~~e-~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~  362 (472)
                      ..+||+++-+-..  +.-+ +-...+.|+..|++++.+-...              + ..+.+  .+.|+|+|+||.  .
T Consensus        30 ~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~--------------d-~~~~l--~~ad~I~v~GGn--t   90 (233)
T PRK05282         30 GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVA--------------D-PVAAI--ENAEAIFVGGGN--T   90 (233)
T ss_pred             CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccch--------------h-hHHHH--hcCCEEEECCcc--H
Confidence            3467888877542  2222 3457888999998877552211              1 12223  567999999995  2


Q ss_pred             hc---ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC
Q 012037          363 ER---LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG  399 (472)
Q Consensus       363 ~~---~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG  399 (472)
                      ..   ..+...+.+.|++..++|+++++.|+|+.+++...
T Consensus        91 ~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii~~~~i  130 (233)
T PRK05282         91 FQLLKQLYERGLLAPIREAVKNGTPYIGWSAGANVAGPTI  130 (233)
T ss_pred             HHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHhhhccc
Confidence            22   23344677889999999999999999999987644

>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated

Probab=95.71  E-value=0.047  Score=50.58  Aligned_cols=75  Identities=16%  Similarity=0.212  Sum_probs=52.9

Q ss_pred             HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCe
Q 012037          305 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI  384 (472)
Q Consensus       305 ~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~  384 (472)
                      .+.+.|++.++++.++-.+..               .++++...++|.||+-||+..+...   ....+.++++ +.+++
T Consensus        14 nl~~~l~~~g~~v~v~~~~~~---------------~~~~~~~~~~d~iIlsgGP~~p~~~---~~~~~~i~~~-~~~~P   74 (195)
T PRK07649         14 NLVQFLGELGQELVVKRNDEV---------------TISDIENMKPDFLMISPGPCSPNEA---GISMEVIRYF-AGKIP   74 (195)
T ss_pred             HHHHHHHHCCCcEEEEeCCCC---------------CHHHHhhCCCCEEEECCCCCChHhC---CCchHHHHHh-cCCCC
Confidence            478899999999988865432               1223322468999999998554432   2245556643 57899


Q ss_pred             EEEEchhHHHHHHc
Q 012037          385 YGAVCSSPIVLHKH  398 (472)
Q Consensus       385 v~aic~G~~lLA~a  398 (472)
                      |.+||-|..+|+.+
T Consensus        75 vLGIClG~Qlla~~   88 (195)
T PRK07649         75 IFGVCLGHQSIAQV   88 (195)
T ss_pred             EEEEcHHHHHHHHH
Confidence            99999999999876

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=95.71  E-value=0.022  Score=59.08  Aligned_cols=89  Identities=24%  Similarity=0.252  Sum_probs=62.1

Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcc--hhcc
Q 012037          288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG--AERL  365 (472)
Q Consensus       288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~--~~~~  365 (472)
                      .||+|.-=.-|+.+ +---.+.|+.+ .++..+|+-.+                 +++  +++|+|++|||...  ...+
T Consensus       234 ~~iavA~D~AF~Fy-Y~enl~~L~~~-aelv~fSPl~~-----------------~~l--p~~D~l~lpGG~~e~~~~~L  292 (433)
T PRK13896        234 PTVAVARDAAFCFR-YPATIERLRER-ADVVTFSPVAG-----------------DPL--PDCDGVYLPGGYPELHADAL  292 (433)
T ss_pred             CeEEEEEcCcccee-CHHHHHHHHhc-CcEEEEcCCCC-----------------CCC--CCCCEEEeCCCchhhHHHHH
Confidence            58888653333322 23345778888 89999988543                 112  35799999999732  1223


Q ss_pred             cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      ..+... +.|+++.++|++|.++|.|-.+|.+.
T Consensus       293 ~~n~~~-~~i~~~~~~G~pi~aeCGG~q~L~~~  324 (433)
T PRK13896        293 ADSPAL-DELADRAADGLPVLGECGGLMALAES  324 (433)
T ss_pred             HhCCcH-HHHHHHHHCCCcEEEEehHHHHhhcc
Confidence            444344 88999999999999999999999863

>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown

Probab=95.60  E-value=0.051  Score=54.96  Aligned_cols=89  Identities=24%  Similarity=0.213  Sum_probs=63.4

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHhC---CCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037           85 KKVLVPVGFGTEEMEAVIIVDVLRRA---GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR  161 (472)
Q Consensus        85 ~kV~ill~~g~~~~e~~~~~~~l~~a---g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~  161 (472)
                      |+|+|.--+|....++...++.|++.   .|.|..++.+   .        +..+...     ..+|++|+|||......
T Consensus         1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~---~--------l~~~pw~-----~~~~LlV~PGG~d~~y~   64 (367)
T PF09825_consen    1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTAD---E--------LLNEPWQ-----SKCALLVMPGGADLPYC   64 (367)
T ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHH---H--------hhcCccc-----cCCcEEEECCCcchHHH
Confidence            57889989999999999999999864   4666666433   1        2211111     25889999999432222


Q ss_pred             ccCChHHHHHHHHHHhcCCeEEEEchhh
Q 012037          162 LRDCEILKKITSKQAEEKRLYGAICAAP  189 (472)
Q Consensus       162 l~~~~~~~~~l~~~~~~~k~I~aic~g~  189 (472)
                      ..-++.-.+.||++.++|+...+||+|+
T Consensus        65 ~~l~~~g~~~Ir~fV~~GG~YlGiCAGa   92 (367)
T PF09825_consen   65 RSLNGEGNRRIRQFVENGGGYLGICAGA   92 (367)
T ss_pred             HhhChHHHHHHHHHHHcCCcEEEECcch
Confidence            2225666888999999999999999964

It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.

>PRK08007 para-aminobenzoate synthase component II; Provisional

Probab=95.55  E-value=0.033  Score=51.20  Aligned_cols=87  Identities=8%  Similarity=0.039  Sum_probs=58.6

Q ss_pred             EEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHH
Q 012037           89 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL  168 (472)
Q Consensus        89 ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~  168 (472)
                      ||+-|+++.... .+++.|++.|+++.++..+.. +              +++.....||.||+-||...+.   ++...
T Consensus         2 il~idn~Dsft~-nl~~~l~~~g~~v~v~~~~~~-~--------------~~~~~~~~~d~iils~GPg~p~---~~~~~   62 (187)
T PRK08007          2 ILLIDNYDSFTW-NLYQYFCELGADVLVKRNDAL-T--------------LADIDALKPQKIVISPGPCTPD---EAGIS   62 (187)
T ss_pred             EEEEECCCccHH-HHHHHHHHCCCcEEEEeCCCC-C--------------HHHHHhcCCCEEEEcCCCCChH---HCCcc
Confidence            566676665553 578889999999988876531 1              1112222589999999854443   33445


Q ss_pred             HHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          169 KKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       169 ~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      .++++. ++.+++|.+||-|-+ +|+.+
T Consensus        63 ~~~~~~-~~~~~PiLGIClG~Q-~la~a   88 (187)
T PRK08007         63 LDVIRH-YAGRLPILGVCLGHQ-AMAQA   88 (187)
T ss_pred             HHHHHH-hcCCCCEEEECHHHH-HHHHH
Confidence            667775 678899999999765 66664

>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]

Probab=95.53  E-value=0.012  Score=53.26  Aligned_cols=49  Identities=18%  Similarity=0.132  Sum_probs=35.7

Q ss_pred             cccEEEEcCCcc-ccccccCChHHHHHHHHHHhcC-CeEEEEchhhHHhhhc
Q 012037          146 VFDLIALPGGMP-GSVRLRDCEILKKITSKQAEEK-RLYGAICAAPAVTLLP  195 (472)
Q Consensus       146 ~~D~vivpGG~~-~~~~l~~~~~~~~~l~~~~~~~-k~I~aic~g~~~lLa~  195 (472)
                      +.|+||||||.. ....+.....+.+-|+++.+.| ++|.+.|+| ..+|++
T Consensus        33 ~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAG-lIlLa~   83 (188)
T PF01174_consen   33 GLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAG-LILLAK   83 (188)
T ss_dssp             T-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHH-HHHHEE
T ss_pred             cCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHH-HHHhhh
Confidence            589999999952 2334556678889999999998 999999995 656776

The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.

>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=95.49  E-value=0.066  Score=49.32  Aligned_cols=84  Identities=17%  Similarity=0.177  Sum_probs=56.0

Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc--cc
Q 012037          290 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL--QK  367 (472)
Q Consensus       290 V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~--~~  367 (472)
                      |+|+=|..-+..++   ...|++.++++.++...                   +++  .++|.||+||+..-...+  .+
T Consensus         2 i~iidyg~gN~~s~---~~al~~~g~~~~~v~~~-------------------~~l--~~~D~lIlPG~g~~~~~~~~L~   57 (192)
T PRK13142          2 IVIVDYGLGNISNV---KRAIEHLGYEVVVSNTS-------------------KII--DQAETIILPGVGHFKDAMSEIK   57 (192)
T ss_pred             EEEEEcCCccHHHH---HHHHHHcCCCEEEEeCH-------------------HHh--ccCCEEEECCCCCHHHHHHHHH
Confidence            77888877776555   55566677777765322                   233  468999999984211111  11


Q ss_pred             cHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC
Q 012037          368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG  399 (472)
Q Consensus       368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG  399 (472)
                      ...+.+.|++  ..++++.+||.|-.+|++..
T Consensus        58 ~~gl~~~i~~--~~g~PvlGIClGmQlL~~~~   87 (192)
T PRK13142         58 RLNLNAILAK--NTDKKMIGICLGMQLMYEHS   87 (192)
T ss_pred             HCCcHHHHHH--hCCCeEEEECHHHHHHhhhc
Confidence            2236677776  56899999999999998654

>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

Probab=95.48  E-value=0.043  Score=50.43  Aligned_cols=76  Identities=17%  Similarity=0.122  Sum_probs=52.3

Q ss_pred             HHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcC
Q 012037          100 AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEK  179 (472)
Q Consensus       100 ~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~  179 (472)
                      ...+.+.|++.|++++++..+..                .++...-++|.|++|||.....    +....+|+++.++.+
T Consensus        11 ~~~l~~~l~~~g~~~~~~~~~~~----------------~~~~~~~~~~glii~Gg~~~~~----~~~~~~~i~~~~~~~   70 (188)
T TIGR00888        11 TQLIARRLRELGVYSELVPNTTP----------------LEEIREKNPKGIILSGGPSSVY----AENAPRADEKIFELG   70 (188)
T ss_pred             HHHHHHHHHHcCCEEEEEeCCCC----------------HHHHhhcCCCEEEECCCCCCcC----cCCchHHHHHHHhCC
Confidence            45677889999999888765521                1111111467999999943221    223567899999999


Q ss_pred             CeEEEEchhhHHhhhcC
Q 012037          180 RLYGAICAAPAVTLLPW  196 (472)
Q Consensus       180 k~I~aic~g~~~lLa~a  196 (472)
                      ++|.+||-|-. +|+.+
T Consensus        71 ~PilGIC~G~Q-ll~~~   86 (188)
T TIGR00888        71 VPVLGICYGMQ-LMAKQ   86 (188)
T ss_pred             CCEEEECHHHH-HHHHh
Confidence            99999999766 67665

separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.

>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]

Probab=95.47  E-value=0.042  Score=48.32  Aligned_cols=96  Identities=15%  Similarity=0.181  Sum_probs=62.6

Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh-c
Q 012037          286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-R  364 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~-~  364 (472)
                      .+.-|+++...|.....+..+-..+....|.+.+               .+.+-++-.|+  .+.|++|||||..... .
T Consensus        10 tn~VIGVLALQGAFiEH~N~~~~c~~en~y~Ik~---------------~~~tVKT~~D~--aq~DaLIIPGGEST~msl   72 (226)
T KOG3210|consen   10 TNVVIGVLALQGAFIEHVNHVEKCIVENRYEIKL---------------SVMTVKTKNDL--AQCDALIIPGGESTAMSL   72 (226)
T ss_pred             cceEEeeeehhhHHHHHHHHHHHhhccCcceEEE---------------EEEeecCHHHH--hhCCEEEecCCchhHHHH
Confidence            4566899998886555554444344333344431               22333345566  6789999999963222 2


Q ss_pred             ccccHHHHHHHHHHHHcC-CeEEEEchhHHHHHHc
Q 012037          365 LQKSRILKKLLKEQKVAG-RIYGAVCSSPIVLHKH  398 (472)
Q Consensus       365 ~~~~~~l~~~L~~~~~~g-~~v~aic~G~~lLA~a  398 (472)
                      +.+-..|.+-|.++..++ +++-+.|+|..+|.+.
T Consensus        73 ia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~q  107 (226)
T KOG3210|consen   73 IAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQQ  107 (226)
T ss_pred             HHhhhhhHHHHHHHhcCCCccceeechhhhhhhhh
Confidence            334445888888888777 9999999999998753

>CHL00101 trpG anthranilate synthase component 2

Probab=95.46  E-value=0.046  Score=50.38  Aligned_cols=76  Identities=14%  Similarity=0.076  Sum_probs=51.6

Q ss_pred             HHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCC
Q 012037          304 VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGR  383 (472)
Q Consensus       304 ~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~  383 (472)
                      ..+.+.|+..|+++.++..+..               .+.++...++|.|||-||.....+..    +...+.+..++++
T Consensus        13 ~~l~~~l~~~g~~~~v~~~~~~---------------~~~~~~~~~~dgiiisgGpg~~~~~~----~~~~i~~~~~~~~   73 (190)
T CHL00101         13 YNLVQSLGELNSDVLVCRNDEI---------------DLSKIKNLNIRHIIISPGPGHPRDSG----ISLDVISSYAPYI   73 (190)
T ss_pred             HHHHHHHHhcCCCEEEEECCCC---------------CHHHHhhCCCCEEEECCCCCChHHCc----chHHHHHHhcCCC
Confidence            4578889999988877655431               22233224689999999985443322    2233334467889


Q ss_pred             eEEEEchhHHHHHHc
Q 012037          384 IYGAVCSSPIVLHKH  398 (472)
Q Consensus       384 ~v~aic~G~~lLA~a  398 (472)
                      ++.+||-|..+|+.+
T Consensus        74 PiLGIClG~Qlla~~   88 (190)
T CHL00101         74 PILGVCLGHQSIGYL   88 (190)
T ss_pred             cEEEEchhHHHHHHH
Confidence            999999999999875

>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional

Probab=95.35  E-value=0.1  Score=53.17  Aligned_cols=88  Identities=15%  Similarity=0.115  Sum_probs=62.7

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ  366 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~  366 (472)
                      .+||+++=+ |+.    ..+.+.|++.|+++.++-.+-                +.+++...++|.||+.||++.+.   
T Consensus       192 ~~~I~viD~-g~k----~ni~~~L~~~G~~v~vvp~~~----------------~~~~i~~~~~dgIilSgGPg~p~---  247 (382)
T CHL00197        192 QLKIIVIDF-GVK----YNILRRLKSFGCSITVVPATS----------------PYQDILSYQPDGILLSNGPGDPS---  247 (382)
T ss_pred             CCEEEEEEC-CcH----HHHHHHHHHCCCeEEEEcCCC----------------CHHHHhccCCCEEEEcCCCCChh---
Confidence            467877765 554    248888999999998874332                22333224689999999975433   


Q ss_pred             ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          367 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       367 ~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      ....+++.++++.+.+.+|.+||-|-.+|+.+
T Consensus       248 ~~~~~i~~i~~~~~~~~PilGIClGhQlLa~a  279 (382)
T CHL00197        248 AIHYGIKTVKKLLKYNIPIFGICMGHQILSLA  279 (382)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEcHHHHHHHHH
Confidence            23456777777777789999999999998865

>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade

Probab=95.29  E-value=0.097  Score=57.85  Aligned_cols=91  Identities=14%  Similarity=0.140  Sum_probs=65.9

Q ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037          285 DRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER  364 (472)
Q Consensus       285 ~~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~  364 (472)
                      ...++|+|+=+..   .-...+.+.|++.|+++.++.....             +..++ .  .++|.|||-||.+... 
T Consensus       514 ~~~~~IlVID~gd---s~~~~l~~~L~~~G~~v~vv~~~~~-------------~~~~~-~--~~~DgLILsgGPGsp~-  573 (717)
T TIGR01815       514 GEGRRILLVDHED---SFVHTLANYLRQTGASVTTLRHSHA-------------EAAFD-E--RRPDLVVLSPGPGRPA-  573 (717)
T ss_pred             CCCCEEEEEECCC---hhHHHHHHHHHHCCCeEEEEECCCC-------------hhhhh-h--cCCCEEEEcCCCCCch-
Confidence            3567899886553   3356889999999999987754421             10111 1  4689999977764332 


Q ss_pred             ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          365 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                         +....++|++..+.+++|.+||-|..+|+.+
T Consensus       574 ---d~~~~~~I~~~~~~~iPvLGICLG~QlLa~a  604 (717)
T TIGR01815       574 ---DFDVAGTIDAALARGLPVFGVCLGLQGMVEA  604 (717)
T ss_pred             ---hcccHHHHHHHHHCCCCEEEECHHHHHHhhh
Confidence               3355788888889999999999999999986

This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.

>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E

Probab=95.28  E-value=0.061  Score=50.47  Aligned_cols=97  Identities=18%  Similarity=0.123  Sum_probs=64.4

Q ss_pred             CCcEEEEEeCCCCcHHH-HHHHHHHHHhC-CCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc--
Q 012037           83 PPKKVLVPVGFGTEEME-AVIIVDVLRRA-GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG--  158 (472)
Q Consensus        83 ~~~kV~ill~~g~~~~e-~~~~~~~l~~a-g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~--  158 (472)
                      ...||+++-....+..+ +.....+|++. |+++..+....            .++ ..+.+.  ..|+|++|||...  
T Consensus        30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~------------~~~-~~~~l~--~ad~I~l~GG~~~~~   94 (212)
T cd03146          30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFD------------TED-PLDALL--EADVIYVGGGNTFNL   94 (212)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccC------------ccc-HHHHHh--cCCEEEECCchHHHH
Confidence            35689988876655444 56688899999 98877665321            111 012223  6999999998421  


Q ss_pred             cccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          159 SVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       159 ~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ...+ ....+.+.|++.+++|++++++|+| +.++.+.
T Consensus        95 ~~~l-~~~~l~~~l~~~~~~g~~i~G~SAG-a~i~~~~  130 (212)
T cd03146          95 LAQW-REHGLDAILKAALERGVVYIGWSAG-SNCWFPS  130 (212)
T ss_pred             HHHH-HHcCHHHHHHHHHHCCCEEEEECHh-HHhhCCC
Confidence            1122 2335777888889999999999996 5567664

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.

>PRK06774 para-aminobenzoate synthase component II; Provisional

Probab=95.26  E-value=0.044  Score=50.50  Aligned_cols=87  Identities=8%  Similarity=0.062  Sum_probs=57.2

Q ss_pred             EEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHH
Q 012037           89 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL  168 (472)
Q Consensus        89 ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~  168 (472)
                      ||+-|+.+... ..+++.|++.|++++++..+.. .              +++.....+|+||+-||..++.   ++...
T Consensus         2 il~id~~dsf~-~nl~~~l~~~~~~~~v~~~~~~-~--------------~~~~~~~~~~~iilsgGP~~~~---~~~~~   62 (191)
T PRK06774          2 LLLIDNYDSFT-YNLYQYFCELGTEVMVKRNDEL-Q--------------LTDIEQLAPSHLVISPGPCTPN---EAGIS   62 (191)
T ss_pred             EEEEECCCchH-HHHHHHHHHCCCcEEEEeCCCC-C--------------HHHHHhcCCCeEEEcCCCCChH---hCCCc
Confidence            45556555443 3578889999999998886632 1              1112212589999999854443   23345


Q ss_pred             HHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          169 KKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       169 ~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ..+++. ++.+++|.+||-|-+ +|+.+
T Consensus        63 ~~~i~~-~~~~~PiLGIC~G~Q-lla~~   88 (191)
T PRK06774         63 LAVIRH-FADKLPILGVCLGHQ-ALGQA   88 (191)
T ss_pred             hHHHHH-hcCCCCEEEECHHHH-HHHHH
Confidence            566654 577999999999766 67765

>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=95.25  E-value=0.028  Score=52.70  Aligned_cols=84  Identities=19%  Similarity=0.173  Sum_probs=56.7

Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcc---hhccc
Q 012037          290 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG---AERLQ  366 (472)
Q Consensus       290 V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~---~~~~~  366 (472)
                      |+|+=|..-+   +......|++.++++.+++.                   .+++  .++|.||+||+...   ...+ 
T Consensus         2 i~iidyg~gN---l~s~~~al~~~~~~~~~~~~-------------------~~~l--~~~d~iIlPG~g~~~~~~~~l-   56 (210)
T PRK14004          2 IAILDYGMGN---IHSCLKAVSLYTKDFVFTSD-------------------PETI--ENSKALILPGDGHFDKAMENL-   56 (210)
T ss_pred             EEEEECCCch---HHHHHHHHHHcCCeEEEECC-------------------HHHh--ccCCEEEECCCCchHHHHHHH-
Confidence            5666555443   34555666666666654422                   2333  46899999997521   1222 


Q ss_pred             ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          367 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       367 ~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      ....+.++|+++.++++++.+||.|..+|++.
T Consensus        57 ~~~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~   88 (210)
T PRK14004         57 NSTGLRSTIDKHVESGKPLFGICIGFQILFES   88 (210)
T ss_pred             HHcCcHHHHHHHHHcCCCEEEECHhHHHHHHh
Confidence            22358889999999999999999999999985

>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

Probab=95.20  E-value=0.066  Score=48.71  Aligned_cols=75  Identities=16%  Similarity=0.107  Sum_probs=47.9

Q ss_pred             HHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCC
Q 012037          101 VIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKR  180 (472)
Q Consensus       101 ~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k  180 (472)
                      ..+.+.|++.|+++.++..+.+          .      ++....+||+||+|||...... ...+.   +.++..+.++
T Consensus        12 ~~~~~~l~~~G~~~~~~~~~~~----------~------~~~~~~~~dgvIl~Gg~~~~~~-~~~~~---~~~~~~~~~~   71 (181)
T cd01742          12 HLIARRVRELGVYSEILPNTTP----------L------EEIKLKNPKGIILSGGPSSVYE-EDAPR---VDPEIFELGV   71 (181)
T ss_pred             HHHHHHHHhcCceEEEecCCCC----------h------hhhcccCCCEEEECCCcccccc-cccch---hhHHHHhcCC
Confidence            4568889999999888876532          0      0112236999999999432211 11122   3344456699


Q ss_pred             eEEEEchhhHHhhhcC
Q 012037          181 LYGAICAAPAVTLLPW  196 (472)
Q Consensus       181 ~I~aic~g~~~lLa~a  196 (472)
                      ++.+||-|-+ +|+.+
T Consensus        72 PilGIC~G~Q-ll~~~   86 (181)
T cd01742          72 PVLGICYGMQ-LIAKA   86 (181)
T ss_pred             CEEEEcHHHH-HHHHh
Confidence            9999999766 67764

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit

Probab=95.20  E-value=0.095  Score=53.11  Aligned_cols=86  Identities=15%  Similarity=0.129  Sum_probs=60.8

Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc
Q 012037          288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK  367 (472)
Q Consensus       288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~  367 (472)
                      +||+++=+ |+.    ...+..|.+.|+++.++-.+.                +++++....+|.||+.||+..+.   .
T Consensus       174 ~~i~viD~-G~k----~ni~~~L~~~G~~v~vvp~~~----------------~~~~i~~~~pDGIiLSgGPgdp~---~  229 (358)
T TIGR01368       174 KRVVVIDF-GVK----QNILRRLVKRGCEVTVVPYDT----------------DAEEIKKYNPDGIFLSNGPGDPA---A  229 (358)
T ss_pred             cEEEEEeC-CcH----HHHHHHHHHCCCEEEEEcCCC----------------CHHHHHhhCCCEEEECCCCCCHH---H
Confidence            46777644 544    358888999999987774322                23333223469999999975433   3


Q ss_pred             cHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      ....+++++++.+ +++|.+||-|..+|+.+
T Consensus       230 ~~~~i~~i~~~~~-~~PILGIClG~QlLa~a  259 (358)
T TIGR01368       230 VEPAIETIRKLLE-KIPIFGICLGHQLLALA  259 (358)
T ss_pred             HHHHHHHHHHHHc-CCCEEEECHHHHHHHHH
Confidence            4567788888876 89999999999999865

This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.

>PRK08857 para-aminobenzoate synthase component II; Provisional

Probab=95.05  E-value=0.061  Score=49.67  Aligned_cols=87  Identities=10%  Similarity=0.048  Sum_probs=57.8

Q ss_pred             EEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHH
Q 012037           89 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL  168 (472)
Q Consensus        89 ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~  168 (472)
                      ||+-|+.+.... .+.+.|++.|+.++++..+.+ ..        .   .+.+.   ++|.+++-||..++.   ++...
T Consensus         2 il~id~~dsft~-~~~~~l~~~g~~~~~~~~~~~-~~--------~---~~~~~---~~~~iilsgGp~~~~---~~~~~   62 (193)
T PRK08857          2 LLMIDNYDSFTY-NLYQYFCELGAQVKVVRNDEI-DI--------D---GIEAL---NPTHLVISPGPCTPN---EAGIS   62 (193)
T ss_pred             EEEEECCCCcHH-HHHHHHHHCCCcEEEEECCCC-CH--------H---HHhhC---CCCEEEEeCCCCChH---HCcch
Confidence            556666655543 578999999999999887633 11        0   01122   488999988843433   33445


Q ss_pred             HHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          169 KKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       169 ~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      .++++. ++.+++|.+||-|.+ +|+.+
T Consensus        63 ~~~i~~-~~~~~PiLGIClG~Q-lia~a   88 (193)
T PRK08857         63 LQAIEH-FAGKLPILGVCLGHQ-AIAQV   88 (193)
T ss_pred             HHHHHH-hcCCCCEEEEcHHHH-HHHHH
Confidence            677765 678999999999866 56654

>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed

Probab=95.03  E-value=0.11  Score=52.55  Aligned_cols=87  Identities=15%  Similarity=0.112  Sum_probs=60.8

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ  366 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~  366 (472)
                      .++|+++=+ |+    -...++.|+..|+++.++-.+.                .++++....+|.||++||+..+.   
T Consensus       167 ~~~V~viD~-G~----k~ni~~~L~~~G~~v~vvp~~~----------------~~~~i~~~~~DGIiLsgGPgdp~---  222 (354)
T PRK12838        167 GKHVALIDF-GY----KKSILRSLSKRGCKVTVLPYDT----------------SLEEIKNLNPDGIVLSNGPGDPK---  222 (354)
T ss_pred             CCEEEEECC-CH----HHHHHHHHHHCCCeEEEEECCC----------------CHHHHhhcCCCEEEEcCCCCChH---
Confidence            357777644 42    3567788888899988775432                12333224689999999975432   


Q ss_pred             ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          367 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       367 ~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      .....+++++++.++ ++|.+||-|..+|+.+
T Consensus       223 ~~~~~~~~i~~~~~~-~PvlGIClG~QlLa~a  253 (354)
T PRK12838        223 ELQPYLPEIKKLISS-YPILGICLGHQLIALA  253 (354)
T ss_pred             HhHHHHHHHHHHhcC-CCEEEECHHHHHHHHH
Confidence            234567888888766 9999999999999854

>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed

Probab=94.92  E-value=0.12  Score=52.44  Aligned_cols=88  Identities=18%  Similarity=0.095  Sum_probs=60.6

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR  163 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~  163 (472)
                      .+||+++=+ |+.    ...++.|++.|+++.++..+.  .              +++....++|.|+++||..++.   
T Consensus       177 ~~~I~viD~-G~k----~nivr~L~~~G~~v~vvp~~~--~--------------~~~i~~~~~DGIvLSgGPgdp~---  232 (360)
T PRK12564        177 KYKVVAIDF-GVK----RNILRELAERGCRVTVVPATT--T--------------AEEILALNPDGVFLSNGPGDPA---  232 (360)
T ss_pred             CCEEEEEeC-CcH----HHHHHHHHHCCCEEEEEeCCC--C--------------HHHHHhcCCCEEEEeCCCCChH---
Confidence            457777644 443    357888899999998886552  1              1111112599999999843332   


Q ss_pred             CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      .++..+++++++.+++++|.+||-|.+ +|+.+
T Consensus       233 ~~~~~~~~i~~~~~~~~PilGIClG~Q-lLa~a  264 (360)
T PRK12564        233 ALDYAIEMIRELLEKKIPIFGICLGHQ-LLALA  264 (360)
T ss_pred             HHHHHHHHHHHHHHcCCeEEEECHHHH-HHHHH
Confidence            236778999999999999999999866 45543

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=94.88  E-value=0.052  Score=57.36  Aligned_cols=84  Identities=18%  Similarity=0.118  Sum_probs=56.8

Q ss_pred             CEEEEEeCCC-CCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc--
Q 012037          288 PRVLIPIANG-SEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER--  364 (472)
Q Consensus       288 ~~V~il~~~g-~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~--  364 (472)
                      .+|+|+-+|. |+..    =+|.|+..  +...+++..                  +++  ++.|+|++|||......  
T Consensus       248 ~~Iav~~~~~~~nf~----~~~~L~~~--~~~~f~~~~------------------~~l--~~~d~lilpGg~~~~~~~~  301 (475)
T TIGR00313       248 IRIGVVRLPRISNFT----DFEPLRYE--AFVKFLDLD------------------DSL--TGCDAVIIPGSKSTIADLY  301 (475)
T ss_pred             cEEEEEcCCcccCcc----ChHHHhhC--CCeEEeCCc------------------ccc--ccCCEEEECCcchHHHHHH
Confidence            5888888663 4444    34555554  233333332                  123  46799999999732222  


Q ss_pred             ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHH
Q 012037          365 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK  397 (472)
Q Consensus       365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~  397 (472)
                      +.++..+.+.|+++.++|++|.++|.|-.+|.+
T Consensus       302 ~l~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~  334 (475)
T TIGR00313       302 ALKQSGFAEEILDFAKEGGIVIGICGGYQMLGK  334 (475)
T ss_pred             HHHhcChHHHHHHHHHcCCcEEEEcHHHHHhhh
Confidence            224555788999999999999999999999998

>PRK05670 anthranilate synthase component II; Provisional

Probab=94.87  E-value=0.086  Score=48.48  Aligned_cols=87  Identities=15%  Similarity=0.085  Sum_probs=55.4

Q ss_pred             EEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHH
Q 012037           89 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL  168 (472)
Q Consensus        89 ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~  168 (472)
                      ||+-|..+ .-...+.+.|++.|++++++..+.. ..           ..+++.   ++|.||+-||..++.   +....
T Consensus         2 iliid~~d-~f~~~i~~~l~~~g~~~~v~~~~~~-~~-----------~~~~~~---~~dglIlsgGpg~~~---d~~~~   62 (189)
T PRK05670          2 ILLIDNYD-SFTYNLVQYLGELGAEVVVYRNDEI-TL-----------EEIEAL---NPDAIVLSPGPGTPA---EAGIS   62 (189)
T ss_pred             EEEEECCC-chHHHHHHHHHHCCCcEEEEECCCC-CH-----------HHHHhC---CCCEEEEcCCCCChH---HcchH
Confidence            34444332 3345678889999999999887632 10           011122   489999988843442   22345


Q ss_pred             HHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          169 KKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       169 ~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      .+++++ ...+++|.+||-|.+ +|+.+
T Consensus        63 ~~~l~~-~~~~~PvLGIClG~Q-lla~a   88 (189)
T PRK05670         63 LELIRE-FAGKVPILGVCLGHQ-AIGEA   88 (189)
T ss_pred             HHHHHH-hcCCCCEEEECHHHH-HHHHH
Confidence            677776 467799999999766 66665

>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

Probab=94.81  E-value=0.092  Score=48.30  Aligned_cols=87  Identities=13%  Similarity=0.058  Sum_probs=55.5

Q ss_pred             EEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHH
Q 012037           89 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL  168 (472)
Q Consensus        89 ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~  168 (472)
                      ||+-|..+-.. ..+.+.|++.|+++.++..+.- .+              ++....++|.|||-||...+.   ++...
T Consensus         2 il~id~~dsft-~~~~~~l~~~g~~v~v~~~~~~-~~--------------~~~~~~~~d~iilsgGpg~p~---~~~~~   62 (188)
T TIGR00566         2 VLMIDNYDSFT-YNLVQYFCELGAEVVVKRNDSL-TL--------------QEIEALLPLLIVISPGPCTPN---EAGIS   62 (188)
T ss_pred             EEEEECCcCHH-HHHHHHHHHcCCceEEEECCCC-CH--------------HHHHhcCCCEEEEcCCCCChh---hcchh
Confidence            44445544443 3567888888999988775531 11              111112589999988843433   22334


Q ss_pred             HHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          169 KKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       169 ~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      .++++++ +++++|.+||-|-+ +|+.+
T Consensus        63 ~~~i~~~-~~~~PvLGIC~G~Q-ll~~~   88 (188)
T TIGR00566        63 LEAIRHF-AGKLPILGVCLGHQ-AMGQA   88 (188)
T ss_pred             HHHHHHh-ccCCCEEEECHHHH-HHHHH
Confidence            7788876 67899999999766 56654

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.

>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

Probab=94.73  E-value=0.12  Score=47.32  Aligned_cols=76  Identities=16%  Similarity=0.069  Sum_probs=49.9

Q ss_pred             HHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCC
Q 012037          101 VIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKR  180 (472)
Q Consensus       101 ~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k  180 (472)
                      ..+.+.|++.|++++++..+.. . .      .     +.+.  ..||+||+.||.....   + ......+++...+++
T Consensus        12 ~~~~~~l~~~G~~~~~~~~~~~-~-~------~-----~~~~--~~~dgvil~gG~~~~~---~-~~~~~~i~~~~~~~~   72 (184)
T cd01743          12 YNLVQYLRELGAEVVVVRNDEI-T-L------E-----ELEL--LNPDAIVISPGPGHPE---D-AGISLEIIRALAGKV   72 (184)
T ss_pred             HHHHHHHHHcCCceEEEeCCCC-C-H------H-----HHhh--cCCCEEEECCCCCCcc---c-chhHHHHHHHHhcCC
Confidence            3467888899999998887643 1 0      0     0112  3699999977733221   1 224555666677889


Q ss_pred             eEEEEchhhHHhhhcC
Q 012037          181 LYGAICAAPAVTLLPW  196 (472)
Q Consensus       181 ~I~aic~g~~~lLa~a  196 (472)
                      +|.+||-|-. +|+.+
T Consensus        73 PvlGIC~G~Q-lla~~   87 (184)
T cd01743          73 PILGVCLGHQ-AIAEA   87 (184)
T ss_pred             CEEEECHhHH-HHHHH
Confidence            9999999755 67765

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese

>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=94.71  E-value=0.078  Score=49.32  Aligned_cols=74  Identities=16%  Similarity=0.087  Sum_probs=46.2

Q ss_pred             HHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc---CChHHHHHHHHH-
Q 012037          100 AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR---DCEILKKITSKQ-  175 (472)
Q Consensus       100 ~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~---~~~~~~~~l~~~-  175 (472)
                      +..+++.|++.|+++.++....                   +..  .+|.||+||+. ......   ..-.+.+.|++. 
T Consensus        12 ~~~v~~~l~~~g~~~~~~~~~~-------------------~l~--~~d~lilPG~g-~~~~~~~~l~~~~~~~~l~~~~   69 (201)
T PRK13152         12 LNSVAKAFEKIGAINFIAKNPK-------------------DLQ--KADKLLLPGVG-SFKEAMKNLKELGFIEALKEQV   69 (201)
T ss_pred             HHHHHHHHHHCCCeEEEECCHH-------------------HHc--CCCEEEECCCC-chHHHHHHHHHcCcHHHHHHHH
Confidence            3455788888888877654221                   122  58999999983 322111   111234455554 


Q ss_pred             HhcCCeEEEEchhhHHhhhcC
Q 012037          176 AEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       176 ~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ++++++|.+||.|.+ +|+.+
T Consensus        70 ~~~~~pvlGiC~G~Q-~l~~~   89 (201)
T PRK13152         70 LVQKKPILGICLGMQ-LFLER   89 (201)
T ss_pred             HhCCCcEEEECHhHH-HHhhc
Confidence            588999999999755 78876

>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]

Probab=94.53  E-value=0.1  Score=46.04  Aligned_cols=101  Identities=11%  Similarity=0.060  Sum_probs=57.8

Q ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc-cc
Q 012037           82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG-SV  160 (472)
Q Consensus        82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~-~~  160 (472)
                      ..+.-|+||...|....-+..+..-+.+..|.+.+               .+.+-.+-.++.  +.|++|||||... +.
T Consensus         9 Ktn~VIGVLALQGAFiEH~N~~~~c~~en~y~Ik~---------------~~~tVKT~~D~a--q~DaLIIPGGEST~ms   71 (226)
T KOG3210|consen    9 KTNVVIGVLALQGAFIEHVNHVEKCIVENRYEIKL---------------SVMTVKTKNDLA--QCDALIIPGGESTAMS   71 (226)
T ss_pred             CcceEEeeeehhhHHHHHHHHHHHhhccCcceEEE---------------EEEeecCHHHHh--hCCEEEecCCchhHHH
Confidence            34567999999886554443333333333333321               122222334444  7999999999532 22


Q ss_pred             cccCChHHHHHHHHHHhcC-CeEEEEchhhHHhhhcCCCCCC
Q 012037          161 RLRDCEILKKITSKQAEEK-RLYGAICAAPAVTLLPWGLLRR  201 (472)
Q Consensus       161 ~l~~~~~~~~~l~~~~~~~-k~I~aic~g~~~lLa~aGlL~g  201 (472)
                      .+.+-..+.+-|.++..++ |++.+.|+| . ++-.+.+-++
T Consensus        72 lia~~tgL~d~L~~fVhn~~k~~WGTCAG-m-I~LS~ql~ne  111 (226)
T KOG3210|consen   72 LIAERTGLYDDLYAFVHNPSKVTWGTCAG-M-IYLSQQLSNE  111 (226)
T ss_pred             HHHhhhhhHHHHHHHhcCCCccceeechh-h-hhhhhhhcCC
Confidence            2333345777777777777 999999996 4 3333334333

>PLN02327 CTP synthase

Probab=94.52  E-value=0.22  Score=52.85  Aligned_cols=156  Identities=13%  Similarity=0.109  Sum_probs=87.6

Q ss_pred             eCCEEeCCCCCChHHHHHHHHHHHhCchhHHhhhhccccc--cC-Cc-chhhhcccccccccCCCCEEEEEeC-CCCCHH
Q 012037          227 SGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMH--NA-DN-SLKKEEFNEVEWFFDRMPRVLIPIA-NGSEEI  301 (472)
Q Consensus       227 Dg~iiTa~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~--~~-~~-~~~~~~~n~~~~~~~~~~~V~il~~-~g~~~~  301 (472)
                      -.++|.+-...+..+.=+.+-    .+.+.+.+.+.|-++  .. .. .+|.+-.+... +.....+|+++-= -...+ 
T Consensus       238 ~~~Vi~~~d~~~iY~vPl~l~----~q~l~~~i~~~l~l~~~~~~~~~~~W~~~~~~~~-~~~~~v~IalVGKY~~l~D-  311 (557)
T PLN02327        238 AENILNLHDVSNIWHVPLLLR----DQKAHEAILKVLNLLSVAREPDLEEWTARAESCD-NLTEPVRIAMVGKYTGLSD-  311 (557)
T ss_pred             HHHEEEcCCCchHhhhhHHHH----HCCcHHHHHHHcCCCCCCCCCChHHHHHHHHHHh-CCCCceEEEEEecccCCcH-
Confidence            356888777666555554444    455666777777776  21 11 12222222111 2233467888753 23333 


Q ss_pred             HHHHHHHHHHhCC----CeEEEEEecCCcceecCCCcEEee---cCCccccCCCcccEEEEcCCCcchhcccccHHHHHH
Q 012037          302 EIVTIVDILRRAK----VDVVVASVERSTQIVASQGVKIIA---DKSISDAAESVYDLIILPGGVAGAERLQKSRILKKL  374 (472)
Q Consensus       302 e~~~~~d~l~~a~----~~v~~vs~~~~~~v~s~~G~~v~~---d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~  374 (472)
                      .+..+.+.|+.|+    .++++.-.+.. .+... +..-.+   +..++.+  .++|.|++|||.+. .   .....+..
T Consensus       312 AY~Si~eAL~hA~~~~~~~v~i~wI~se-~l~~~-~~~~~~~~y~~~~~~L--~~~DGIvvpGGfG~-~---~~~G~i~a  383 (557)
T PLN02327        312 SYLSVLKALLHASVACSRKLVIDWVAAS-DLEDE-TAKETPDAYAAAWKLL--KGADGILVPGGFGD-R---GVEGKILA  383 (557)
T ss_pred             hHHHHHHHHHHHHHHcCCeeEEEEEchh-hcCCc-ccccccchhhhhHHhh--ccCCEEEeCCCCCC-c---ccccHHHH
Confidence            3677888888875    44554444432 22111 110000   1112233  78999999999732 2   22344667


Q ss_pred             HHHHHHcCCeEEEEchhHHHHH
Q 012037          375 LKEQKVAGRIYGAVCSSPIVLH  396 (472)
Q Consensus       375 L~~~~~~g~~v~aic~G~~lLA  396 (472)
                      ++.+.++++++.+||-|..+++
T Consensus       384 i~~are~~iP~LGIClGmQl~v  405 (557)
T PLN02327        384 AKYARENKVPYLGICLGMQIAV  405 (557)
T ss_pred             HHHHHHcCCCEEEEcHHHHHHH
Confidence            7778889999999999987764

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=94.40  E-value=0.13  Score=53.43  Aligned_cols=89  Identities=21%  Similarity=0.137  Sum_probs=61.9

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc--ccc
Q 012037           85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS--VRL  162 (472)
Q Consensus        85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~--~~l  162 (472)
                      .||+|---.-|+.. +-.-++.|+++ +++..+|+-..                 +..+  ++|+|++|||....  ..+
T Consensus       234 ~~iavA~D~AF~Fy-Y~enl~~L~~~-aelv~fSPl~~-----------------~~lp--~~D~l~lpGG~~e~~~~~L  292 (433)
T PRK13896        234 PTVAVARDAAFCFR-YPATIERLRER-ADVVTFSPVAG-----------------DPLP--DCDGVYLPGGYPELHADAL  292 (433)
T ss_pred             CeEEEEEcCcccee-CHHHHHHHHhc-CcEEEEcCCCC-----------------CCCC--CCCEEEeCCCchhhHHHHH
Confidence            58998875544432 44557888888 89988887532                 1223  58999999997322  224


Q ss_pred             cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ..+... +-|+++.++|++|.++|.| ..+|.+.
T Consensus       293 ~~n~~~-~~i~~~~~~G~pi~aeCGG-~q~L~~~  324 (433)
T PRK13896        293 ADSPAL-DELADRAADGLPVLGECGG-LMALAES  324 (433)
T ss_pred             HhCCcH-HHHHHHHHCCCcEEEEehH-HHHhhcc
Confidence            444444 7899999999999999996 5466663

>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated

Probab=94.40  E-value=0.091  Score=48.64  Aligned_cols=87  Identities=10%  Similarity=0.112  Sum_probs=56.2

Q ss_pred             EEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHH
Q 012037           89 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL  168 (472)
Q Consensus        89 ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~  168 (472)
                      ||+-|..+... ..+.+.|++.|+++.++..+.. ..              ++.....||+||+-||...+..   ....
T Consensus         2 il~idn~dsft-~nl~~~l~~~g~~v~v~~~~~~-~~--------------~~~~~~~~d~iIlsgGP~~p~~---~~~~   62 (195)
T PRK07649          2 ILMIDNYDSFT-FNLVQFLGELGQELVVKRNDEV-TI--------------SDIENMKPDFLMISPGPCSPNE---AGIS   62 (195)
T ss_pred             EEEEeCCCccH-HHHHHHHHHCCCcEEEEeCCCC-CH--------------HHHhhCCCCEEEECCCCCChHh---CCCc
Confidence            45556555444 3588999999999988876532 11              1111125899999998544432   2335


Q ss_pred             HHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          169 KKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       169 ~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ...++. ++.++++.+||-|.+ +|+.+
T Consensus        63 ~~~i~~-~~~~~PvLGIClG~Q-lla~~   88 (195)
T PRK07649         63 MEVIRY-FAGKIPIFGVCLGHQ-SIAQV   88 (195)
T ss_pred             hHHHHH-hcCCCCEEEEcHHHH-HHHHH
Confidence            566664 467899999999766 67764

>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade

Probab=94.32  E-value=0.28  Score=54.33  Aligned_cols=90  Identities=13%  Similarity=0.072  Sum_probs=62.4

Q ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037           83 PPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL  162 (472)
Q Consensus        83 ~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l  162 (472)
                      ..+||+|+=+.+   .-...+.+.|++.|+++.++.......             .++   ...||.|||-||...+.  
T Consensus       515 ~~~~IlVID~gd---s~~~~l~~~L~~~G~~v~vv~~~~~~~-------------~~~---~~~~DgLILsgGPGsp~--  573 (717)
T TIGR01815       515 EGRRILLVDHED---SFVHTLANYLRQTGASVTTLRHSHAEA-------------AFD---ERRPDLVVLSPGPGRPA--  573 (717)
T ss_pred             CCCEEEEEECCC---hhHHHHHHHHHHCCCeEEEEECCCChh-------------hhh---hcCCCEEEEcCCCCCch--
Confidence            467888885442   335678999999999998876542100             011   12599999977633332  


Q ss_pred             cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                        +....++|++.++++++|.+||-|.+ +|+.+
T Consensus       574 --d~~~~~~I~~~~~~~iPvLGICLG~Q-lLa~a  604 (717)
T TIGR01815       574 --DFDVAGTIDAALARGLPVFGVCLGLQ-GMVEA  604 (717)
T ss_pred             --hcccHHHHHHHHHCCCCEEEECHHHH-HHhhh
Confidence              33567899999999999999999766 67765

This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.

>TIGR00337 PyrG CTP synthase

Probab=94.31  E-value=0.35  Score=51.09  Aligned_cols=149  Identities=12%  Similarity=0.092  Sum_probs=86.3

Q ss_pred             eCCEEeCCCCCChHHHHHHHHHHHhCchhHHhhhhccccccC-Cc-chhhhcccccccccCCCCEEEEEeCCCCCHHHHH
Q 012037          227 SGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNA-DN-SLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIV  304 (472)
Q Consensus       227 Dg~iiTa~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~~~-~~-~~~~~~~n~~~~~~~~~~~V~il~~~g~~~~e~~  304 (472)
                      -.+++.+-...+..+.=+.+-    .+.+.+.+.+.|-++.. .. .+|.+-.+... ......+|+++-=---..-.+.
T Consensus       232 ~~~vi~~~d~~~iY~vPl~l~----~q~~~~~i~~~l~l~~~~~~~~~W~~~~~~~~-~~~~~v~IalVGKY~~~~daY~  306 (525)
T TIGR00337       232 EEAVINAHDVSSIYEVPLLLL----KQGLDDYLCRRLNLNCDEADLSEWEELVEKFI-NPKHEVTIGIVGKYVELKDSYL  306 (525)
T ss_pred             HHHEEEcCCCccHhhhhHHHH----HCChHHHHHHHhCCCCCCCcHHHHHHHHHHhh-CCCCCcEEEEEeCCcCCHHHHH
Confidence            457888877776665555444    44566777777777632 12 12222111111 2233578888754322223457


Q ss_pred             HHHHHHHhCCC----eEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHH
Q 012037          305 TIVDILRRAKV----DVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKV  380 (472)
Q Consensus       305 ~~~d~l~~a~~----~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~  380 (472)
                      .+.+.|..++.    ++.+...+.. .+...         ..+.+  .++|.|++|||.+. .   ..+..+..++.+.+
T Consensus       307 SI~eAL~~ag~~~~~~V~~~~i~se-~i~~~---------~~~~L--~~~dGIiLpGG~G~-~---~~~g~i~ai~~a~e  370 (525)
T TIGR00337       307 SVIEALKHAGAKLDTKVNIKWIDSE-DLEEE---------GAEFL--KGVDGILVPGGFGE-R---GVEGKILAIKYARE  370 (525)
T ss_pred             HHHHHHHhCccccCCEEEEEEecHH-Hhhhh---------hhhhh--cCCCEEEeCCCCCC-h---hhcChHHHHHHHHH
Confidence            88999999885    3333332221 11110         00112  56899999999742 2   23445667787788


Q ss_pred             cCCeEEEEchhHHHHH
Q 012037          381 AGRIYGAVCSSPIVLH  396 (472)
Q Consensus       381 ~g~~v~aic~G~~lLA  396 (472)
                      ++.++.+||-|-.+++
T Consensus       371 ~~iP~LGIClG~Qll~  386 (525)
T TIGR00337       371 NNIPFLGICLGMQLAV  386 (525)
T ss_pred             cCCCEEEEcHHHHHHH
Confidence            9999999999997664

CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).

>PRK05282 (alpha)-aspartyl dipeptidase; Validated

Probab=94.25  E-value=0.15  Score=48.59  Aligned_cols=96  Identities=15%  Similarity=0.025  Sum_probs=62.1

Q ss_pred             CCcEEEEEeCCCC--cHHH-HHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc-
Q 012037           83 PPKKVLVPVGFGT--EEME-AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG-  158 (472)
Q Consensus        83 ~~~kV~ill~~g~--~~~e-~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~-  158 (472)
                      ..+||+++-+-..  +..+ +....++|++.|+++..+-...               ...+.+.  ..|+|+|+||..- 
T Consensus        30 ~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~---------------d~~~~l~--~ad~I~v~GGnt~~   92 (233)
T PRK05282         30 GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVA---------------DPVAAIE--NAEAIFVGGGNTFQ   92 (233)
T ss_pred             CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccch---------------hhHHHHh--cCCEEEECCccHHH
Confidence            4678998876542  2233 4457888889999876553221               0111222  6899999999411 


Q ss_pred             cccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          159 SVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       159 ~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      .........+.+.|++.+++|+++++.|+| +.+++..
T Consensus        93 l~~~l~~~gl~~~l~~~~~~G~~~~G~SAG-Aii~~~~  129 (233)
T PRK05282         93 LLKQLYERGLLAPIREAVKNGTPYIGWSAG-ANVAGPT  129 (233)
T ss_pred             HHHHHHHCCcHHHHHHHHHCCCEEEEECHH-HHhhhcc
Confidence            111233456778899999999999999996 5455543

>PRK13566 anthranilate synthase; Provisional

Probab=94.22  E-value=0.36  Score=53.50  Aligned_cols=91  Identities=16%  Similarity=0.073  Sum_probs=63.9

Q ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037           82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR  161 (472)
Q Consensus        82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~  161 (472)
                      ...+||+|+=+.+   .-...+.+.|++.|+++.++..+....             .+..   .++|.|||-||...+  
T Consensus       524 ~~g~~IlvID~~d---sf~~~l~~~Lr~~G~~v~vv~~~~~~~-------------~~~~---~~~DgVVLsgGpgsp--  582 (720)
T PRK13566        524 GEGKRVLLVDHED---SFVHTLANYFRQTGAEVTTVRYGFAEE-------------MLDR---VNPDLVVLSPGPGRP--  582 (720)
T ss_pred             CCCCEEEEEECCC---chHHHHHHHHHHCCCEEEEEECCCChh-------------Hhhh---cCCCEEEECCCCCCh--
Confidence            3457887776553   335678899999999999988763200             1111   259999997763332  


Q ss_pred             ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          162 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       162 l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                        .+..+.+++++..+++++|.+||-|.. +|+.+
T Consensus       583 --~d~~~~~lI~~a~~~~iPILGIClG~Q-lLa~a  614 (720)
T PRK13566        583 --SDFDCKATIDAALARNLPIFGVCLGLQ-AIVEA  614 (720)
T ss_pred             --hhCCcHHHHHHHHHCCCcEEEEehhHH-HHHHH
Confidence              234578999999999999999999866 56665

>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=94.18  E-value=0.1  Score=48.10  Aligned_cols=83  Identities=13%  Similarity=0.073  Sum_probs=53.1

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc-cc--c
Q 012037           87 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV-RL--R  163 (472)
Q Consensus        87 V~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~-~l--~  163 (472)
                      |+|+=+..-+.   .....+|++.|+++.++...                   ++..  ++|.||+||+. ... .+  .
T Consensus         2 i~iidyg~gN~---~s~~~al~~~g~~~~~v~~~-------------------~~l~--~~D~lIlPG~g-~~~~~~~~L   56 (192)
T PRK13142          2 IVIVDYGLGNI---SNVKRAIEHLGYEVVVSNTS-------------------KIID--QAETIILPGVG-HFKDAMSEI   56 (192)
T ss_pred             EEEEEcCCccH---HHHHHHHHHcCCCEEEEeCH-------------------HHhc--cCCEEEECCCC-CHHHHHHHH
Confidence            67776665444   45578888888887776422                   1222  58999999982 211 11  1


Q ss_pred             CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCC
Q 012037          164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG  197 (472)
Q Consensus       164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aG  197 (472)
                      ....+.+.|++  +.++++.+||.|-. +|++..
T Consensus        57 ~~~gl~~~i~~--~~g~PvlGIClGmQ-lL~~~~   87 (192)
T PRK13142         57 KRLNLNAILAK--NTDKKMIGICLGMQ-LMYEHS   87 (192)
T ss_pred             HHCCcHHHHHH--hCCCeEEEECHHHH-HHhhhc
Confidence            11235677776  57899999999754 677653

>PRK00758 GMP synthase subunit A; Validated

Probab=94.16  E-value=0.12  Score=47.28  Aligned_cols=68  Identities=18%  Similarity=0.173  Sum_probs=45.3

Q ss_pred             HHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcc-cEEEEcCCccccccccCChHHHHHHHHHHhcCCe
Q 012037          103 IVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVF-DLIALPGGMPGSVRLRDCEILKKITSKQAEEKRL  181 (472)
Q Consensus       103 ~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~-D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~  181 (472)
                      +.+.|++.|+++.++..+..                .++..  .+ |+|+++||. ...   ....+.+|++   +.+++
T Consensus        15 i~~~l~~~g~~~~~~~~~~~----------------~~~l~--~~~dgivi~Gg~-~~~---~~~~~~~~l~---~~~~P   69 (184)
T PRK00758         15 IHRTLRYLGVDAKIIPNTTP----------------VEEIK--AFEDGLILSGGP-DIE---RAGNCPEYLK---ELDVP   69 (184)
T ss_pred             HHHHHHHcCCcEEEEECCCC----------------HHHHh--hcCCEEEECCCC-Chh---hccccHHHHH---hCCCC
Confidence            57788888988877664421                11222  45 999999994 322   2234566776   45899


Q ss_pred             EEEEchhhHHhhhcC
Q 012037          182 YGAICAAPAVTLLPW  196 (472)
Q Consensus       182 I~aic~g~~~lLa~a  196 (472)
                      |.+||-|-+ +|+.+
T Consensus        70 ilGIC~G~Q-~L~~a   83 (184)
T PRK00758         70 ILGICLGHQ-LIAKA   83 (184)
T ss_pred             EEEEeHHHH-HHHHh
Confidence            999999755 67766

>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=94.07  E-value=0.072  Score=49.03  Aligned_cols=81  Identities=17%  Similarity=0.140  Sum_probs=51.5

Q ss_pred             HHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc--------------ccCCh
Q 012037          101 VIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR--------------LRDCE  166 (472)
Q Consensus       101 ~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~--------------l~~~~  166 (472)
                      ......|+..|+.+.++..... .            ..+.. ....+|.|++|||......              ...+.
T Consensus        22 ~~~~~~l~~~G~~~~iv~~~~~-~------------~~~~~-~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~   87 (189)
T cd01745          22 QYYVDAVRKAGGLPVLLPPVDD-E------------EDLEQ-YLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDA   87 (189)
T ss_pred             HHHHHHHHHCCCEEEEeCCCCC-h------------HHHHH-HHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHH
Confidence            3567888888988877765431 1            00111 0126999999999421111              11123


Q ss_pred             HHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          167 ILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       167 ~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ...++++++.+.+++|.+||.|.. +|+.+
T Consensus        88 ~~~~~~~~~~~~~~PilgiC~G~Q-~l~~~  116 (189)
T cd01745          88 FELALLRAALERGKPILGICRGMQ-LLNVA  116 (189)
T ss_pred             HHHHHHHHHHHCCCCEEEEcchHH-HHHHH
Confidence            457899999999999999999866 45543

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=94.07  E-value=0.12  Score=47.98  Aligned_cols=85  Identities=16%  Similarity=0.140  Sum_probs=51.5

Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc--cc
Q 012037          290 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL--QK  367 (472)
Q Consensus       290 V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~--~~  367 (472)
                      |+|+=|-.-+..   .+.+.|++.++++.++...                   +++  .++|.||+||+.......  .+
T Consensus         2 i~iid~g~~n~~---~v~~~l~~~g~~~~~~~~~-------------------~~l--~~~d~lilPG~g~~~~~~~~l~   57 (201)
T PRK13152          2 IALIDYKAGNLN---SVAKAFEKIGAINFIAKNP-------------------KDL--QKADKLLLPGVGSFKEAMKNLK   57 (201)
T ss_pred             EEEEECCCCcHH---HHHHHHHHCCCeEEEECCH-------------------HHH--cCCCEEEECCCCchHHHHHHHH
Confidence            445444433433   4456677777777654321                   123  458999999975211111  11


Q ss_pred             cHHHHHHHHHH-HHcCCeEEEEchhHHHHHHc
Q 012037          368 SRILKKLLKEQ-KVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       368 ~~~l~~~L~~~-~~~g~~v~aic~G~~lLA~a  398 (472)
                      ...+.+.|+++ .+++++|.+||.|..+|+.+
T Consensus        58 ~~~~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~   89 (201)
T PRK13152         58 ELGFIEALKEQVLVQKKPILGICLGMQLFLER   89 (201)
T ss_pred             HcCcHHHHHHHHHhCCCcEEEECHhHHHHhhc
Confidence            11234555554 57899999999999999987

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=94.03  E-value=0.11  Score=54.76  Aligned_cols=44  Identities=25%  Similarity=0.214  Sum_probs=30.2

Q ss_pred             cccEEEEcCCccccc--cccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          146 VFDLIALPGGMPGSV--RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       146 ~~D~vivpGG~~~~~--~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ++|+||+|||. ...  .+  ...+.++|+++   |++|.+||.|-+ +|++.
T Consensus        36 ~~D~lILPGG~-~~~~~~l--~~~l~~~i~~~---g~pvlGICgG~Q-mLg~~   81 (476)
T PRK06278         36 DLDGLIIPGGS-LVESGSL--TDELKKEILNF---DGYIIGICSGFQ-ILSEK   81 (476)
T ss_pred             cCCEEEECCCc-hhhcchH--HHHHHHHHHHc---CCeEEEEcHHHH-hcccc
Confidence            69999999983 111  11  23455556555   999999999744 77766

>PRK06186 hypothetical protein; Validated

Probab=94.02  E-value=0.3  Score=46.20  Aligned_cols=88  Identities=14%  Similarity=0.061  Sum_probs=57.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHHHHhCC----CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037          289 RVLIPIANGSEEIEIVTIVDILRRAK----VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER  364 (472)
Q Consensus       289 ~V~il~~~g~~~~e~~~~~d~l~~a~----~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~  364 (472)
                      +|+++-=---..-.+..+.+.|+.++    .++++.-.+.. .+...           +.+  .++|.|+||||.+ .  
T Consensus         3 ~IalVGKY~~~~daY~Sv~eal~ha~~~~~~~~~i~wi~s~-~l~~~-----------~~l--~~~dgilvpgGfg-~--   65 (229)
T PRK06186          3 RIALVGDYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTP-EITDP-----------EDL--AGFDGIWCVPGSP-Y--   65 (229)
T ss_pred             EEEEEECCcCCcHHHHHHHHHHHHHHHhcCCeeEEEEEchh-hcCCh-----------hhH--hhCCeeEeCCCCC-c--
Confidence            45554322112234567788888775    55555544443 11111           122  6789999999974 2  


Q ss_pred             ccccHHHHHHHHHHHHcCCeEEEEchhHHH
Q 012037          365 LQKSRILKKLLKEQKVAGRIYGAVCSSPIV  394 (472)
Q Consensus       365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~l  394 (472)
                       +.-+.-+..++...+++.++.+||-|..+
T Consensus        66 -rg~~Gki~ai~~Are~~iP~LGIClGmQ~   94 (229)
T PRK06186         66 -RNDDGALTAIRFARENGIPFLGTCGGFQH   94 (229)
T ss_pred             -ccHhHHHHHHHHHHHcCCCeEeechhhHH
Confidence             34567788899999999999999999874

>PLN02335 anthranilate synthase

Probab=93.94  E-value=0.21  Score=47.23  Aligned_cols=90  Identities=7%  Similarity=0.012  Sum_probs=56.7

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR  163 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~  163 (472)
                      .+||+|+  |..+.. ...+.+.|++.|++++++..+.. +              +++.....||+|||-||...+.   
T Consensus        18 ~~~ilvi--D~~dsf-t~~i~~~L~~~g~~~~v~~~~~~-~--------------~~~~~~~~~d~iVisgGPg~p~---   76 (222)
T PLN02335         18 NGPIIVI--DNYDSF-TYNLCQYMGELGCHFEVYRNDEL-T--------------VEELKRKNPRGVLISPGPGTPQ---   76 (222)
T ss_pred             cCcEEEE--ECCCCH-HHHHHHHHHHCCCcEEEEECCCC-C--------------HHHHHhcCCCEEEEcCCCCChh---
Confidence            4577777  433333 34678899999999999965421 1              1111112589999999854443   


Q ss_pred             CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      +.....+++++ ....++|.+||-|.+ +|+.+
T Consensus        77 d~~~~~~~~~~-~~~~~PiLGIClG~Q-lLa~a  107 (222)
T PLN02335         77 DSGISLQTVLE-LGPLVPLFGVCMGLQ-CIGEA  107 (222)
T ss_pred             hccchHHHHHH-hCCCCCEEEecHHHH-HHHHH
Confidence            22234556654 456799999999866 56653

>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=93.92  E-value=0.3  Score=52.27  Aligned_cols=92  Identities=14%  Similarity=0.121  Sum_probs=58.2

Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc
Q 012037          288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK  367 (472)
Q Consensus       288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~  367 (472)
                      +||+|+  |..+-.. ..+++.|+..|+++.++..+-  +          .+..++++...++|.||+-||++.+.....
T Consensus         2 ~~iLiI--Dn~dsft-~nl~~~lr~~g~~v~V~~~~~--~----------~~~~~~~l~~~~~~~IIlSpGPg~p~d~~~   66 (531)
T PRK09522          2 ADILLL--DNIDSFT-YNLADQLRSNGHNVVIYRNHI--P----------AQTLIERLATMSNPVLMLSPGPGVPSEAGC   66 (531)
T ss_pred             CeEEEE--eCCChHH-HHHHHHHHHCCCCEEEEECCC--C----------CccCHHHHHhcCcCEEEEcCCCCChhhCCC
Confidence            455555  3333333 457888899999998887542  1          112344443345789999999865543332


Q ss_pred             cHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      .+.+++    ..+.+.+|.+||-|-.+|+.+
T Consensus        67 ~~~i~~----~~~~~iPILGIClG~QlLa~a   93 (531)
T PRK09522         67 MPELLT----RLRGKLPIIGICLGHQAIVEA   93 (531)
T ss_pred             CHHHHH----HHhcCCCEEEEcHHHHHHHHh
Confidence            333332    234689999999999999876

>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase

Probab=93.91  E-value=0.45  Score=45.41  Aligned_cols=45  Identities=16%  Similarity=0.137  Sum_probs=36.5

Q ss_pred             CcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHH
Q 012037          348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLH  396 (472)
Q Consensus       348 ~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA  396 (472)
                      .++|.|+++||.. ..   .....+.+++...+.++++.+||.|..+|+
T Consensus        54 ~~~dgivl~GG~~-~~---~~~~~~~~i~~~~~~~~PvlGIClG~Q~l~   98 (235)
T cd01746          54 KGADGILVPGGFG-IR---GVEGKILAIKYARENNIPFLGICLGMQLAV   98 (235)
T ss_pred             ccCCEEEECCCCC-Cc---chhhHHHHHHHHHHCCceEEEEEhHHHHHH
Confidence            5799999999973 22   234667888988999999999999998774

Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th

>CHL00101 trpG anthranilate synthase component 2

Probab=93.89  E-value=0.15  Score=46.86  Aligned_cols=87  Identities=8%  Similarity=0.003  Sum_probs=54.0

Q ss_pred             EEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHH
Q 012037           89 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL  168 (472)
Q Consensus        89 ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~  168 (472)
                      ||+-|..+... ..+.+.|++.|+++.++..+.. +              +.+.....+|+|||-||...+.+   + ..
T Consensus         2 iliid~~dsft-~~l~~~l~~~g~~~~v~~~~~~-~--------------~~~~~~~~~dgiiisgGpg~~~~---~-~~   61 (190)
T CHL00101          2 ILIIDNYDSFT-YNLVQSLGELNSDVLVCRNDEI-D--------------LSKIKNLNIRHIIISPGPGHPRD---S-GI   61 (190)
T ss_pred             EEEEECCCchH-HHHHHHHHhcCCCEEEEECCCC-C--------------HHHHhhCCCCEEEECCCCCChHH---C-cc
Confidence            44444443333 4578889999988887765531 1              11111125899999998543332   2 23


Q ss_pred             HHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          169 KKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       169 ~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ...+.+.++.+++|.+||-|-+ +|+.+
T Consensus        62 ~~~i~~~~~~~~PiLGIClG~Q-lla~~   88 (190)
T CHL00101         62 SLDVISSYAPYIPILGVCLGHQ-SIGYL   88 (190)
T ss_pred             hHHHHHHhcCCCcEEEEchhHH-HHHHH
Confidence            3344456788999999999765 67764

>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []

Probab=93.82  E-value=0.1  Score=47.96  Aligned_cols=79  Identities=22%  Similarity=0.232  Sum_probs=57.1

Q ss_pred             HHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcC
Q 012037          100 AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEK  179 (472)
Q Consensus       100 ~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~  179 (472)
                      ...+...|++.|.+++++..+.. ..        .+   .+  ....||+++|+||......   .+...+++++..+.+
T Consensus        10 ~~~l~~~l~~~~~~~~v~~~~~~-~~--------~~---~~--~~~~~d~iii~Gg~~~~~d---~~~~~~~i~~~~~~~   72 (192)
T PF00117_consen   10 THSLVRALRELGIDVEVVRVDSD-FE--------EP---LE--DLDDYDGIIISGGPGSPYD---IEGLIELIREARERK   72 (192)
T ss_dssp             HHHHHHHHHHTTEEEEEEETTGG-HH--------HH---HH--HTTTSSEEEEECESSSTTS---HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCeEEEEECCCc-hh--------hh---hh--hhcCCCEEEECCcCCcccc---ccccccccccccccc
Confidence            35678899999999999886632 10        00   00  1237999999999544332   578889999999999


Q ss_pred             CeEEEEchhhHHhhhcC
Q 012037          180 RLYGAICAAPAVTLLPW  196 (472)
Q Consensus       180 k~I~aic~g~~~lLa~a  196 (472)
                      ++|.+||-|-. +|+.+
T Consensus        73 ~PilGIC~G~Q-~la~~   88 (192)
T PF00117_consen   73 IPILGICLGHQ-ILAHA   88 (192)
T ss_dssp             SEEEEETHHHH-HHHHH
T ss_pred             eEEEEEeehhh-hhHHh
Confidence            99999999866 56654

The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....

>PRK05637 anthranilate synthase component II; Provisional

Probab=93.73  E-value=0.3  Score=45.68  Aligned_cols=89  Identities=19%  Similarity=0.158  Sum_probs=55.0

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR  163 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~  163 (472)
                      |+||+++  |..+.. ...+++.|++.|+.++++..+.  ++              ++.....||.|||-||..++.   
T Consensus         1 ~~~il~i--D~~dsf-~~nl~~~l~~~g~~~~v~~~~~--~~--------------~~l~~~~~~~iIlsgGPg~~~---   58 (208)
T PRK05637          1 MTHVVLI--DNHDSF-VYNLVDAFAVAGYKCTVFRNTV--PV--------------EEILAANPDLICLSPGPGHPR---   58 (208)
T ss_pred             CCEEEEE--ECCcCH-HHHHHHHHHHCCCcEEEEeCCC--CH--------------HHHHhcCCCEEEEeCCCCCHH---
Confidence            4565555  332222 2357889999999998887652  11              111122589999988743332   


Q ss_pred             CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      +.....++++... .+++|.+||-|.+ +|+.+
T Consensus        59 d~~~~~~li~~~~-~~~PiLGIClG~Q-lla~a   89 (208)
T PRK05637         59 DAGNMMALIDRTL-GQIPLLGICLGFQ-ALLEH   89 (208)
T ss_pred             HhhHHHHHHHHHh-CCCCEEEEcHHHH-HHHHH
Confidence            2233456665443 5799999999766 67765

>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=93.63  E-value=0.5  Score=43.07  Aligned_cols=89  Identities=16%  Similarity=0.194  Sum_probs=59.1

Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc
Q 012037          288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK  367 (472)
Q Consensus       288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~  367 (472)
                      ++|+++  |.++... ..+++.|+..|.++.++-.+.-               +..++...++|.|+|--|++.+.   .
T Consensus         2 ~~IL~I--DNyDSFt-yNLv~yl~~lg~~v~V~rnd~~---------------~~~~~~~~~pd~iviSPGPG~P~---d   60 (191)
T COG0512           2 MMILLI--DNYDSFT-YNLVQYLRELGAEVTVVRNDDI---------------SLELIEALKPDAIVISPGPGTPK---D   60 (191)
T ss_pred             ceEEEE--ECccchH-HHHHHHHHHcCCceEEEECCcc---------------CHHHHhhcCCCEEEEcCCCCChH---H
Confidence            344444  4444443 3678888888888877755521               22233335689999988875433   3


Q ss_pred             cHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      .....+.|+++ .+..+|.+||-|=..|+++
T Consensus        61 ~G~~~~~i~~~-~~~~PiLGVCLGHQai~~~   90 (191)
T COG0512          61 AGISLELIRRF-AGRIPILGVCLGHQAIAEA   90 (191)
T ss_pred             cchHHHHHHHh-cCCCCEEEECccHHHHHHH
Confidence            34577888888 6678999999999888754

>PLN02347 GMP synthetase

Probab=93.46  E-value=0.52  Score=50.49  Aligned_cols=91  Identities=16%  Similarity=0.138  Sum_probs=57.3

Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc
Q 012037          288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK  367 (472)
Q Consensus       288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~  367 (472)
                      .+|+|+=|-.-.   ...+...|++.|+.+.++..+.                +++++...++|.||++||+.... ...
T Consensus        11 ~~IlIID~G~~~---t~~I~r~lrelgv~~~v~p~~~----------------~~~~i~~~~~dgIILsGGP~sv~-~~~   70 (536)
T PLN02347         11 DVVLILDYGSQY---THLITRRVRELGVYSLLLSGTA----------------SLDRIASLNPRVVILSGGPHSVH-VEG   70 (536)
T ss_pred             CEEEEEECCCcH---HHHHHHHHHHCCCeEEEEECCC----------------CHHHHhcCCCCEEEECCCCCccc-ccC
Confidence            367776554333   2456778888888877765442                23444223689999999974322 112


Q ss_pred             cHHHH-HHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          368 SRILK-KLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       368 ~~~l~-~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      .+.+. .+++...+.+.+|.+||-|..+|+.+
T Consensus        71 ~p~~~~~i~~~~~~~~iPILGIClG~QlLa~a  102 (536)
T PLN02347         71 APTVPEGFFDYCRERGVPVLGICYGMQLIVQK  102 (536)
T ss_pred             CchhhHHHHHHHHhcCCcEEEECHHHHHHHHH
Confidence            22222 23333445789999999999999975

>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=93.38  E-value=0.078  Score=49.69  Aligned_cols=84  Identities=13%  Similarity=0.040  Sum_probs=55.3

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcc---cccccc
Q 012037           87 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMP---GSVRLR  163 (472)
Q Consensus        87 V~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~---~~~~l~  163 (472)
                      |+|+=|..-   -+..+...|+..++++.++....                   +..  .+|.||+||+..   ....+.
T Consensus         2 i~iidyg~g---Nl~s~~~al~~~~~~~~~~~~~~-------------------~l~--~~d~iIlPG~g~~~~~~~~l~   57 (210)
T PRK14004          2 IAILDYGMG---NIHSCLKAVSLYTKDFVFTSDPE-------------------TIE--NSKALILPGDGHFDKAMENLN   57 (210)
T ss_pred             EEEEECCCc---hHHHHHHHHHHcCCeEEEECCHH-------------------Hhc--cCCEEEECCCCchHHHHHHHH
Confidence            555544433   34566777777787776653221                   222  689999999831   112222


Q ss_pred             CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                       ...+.++|+++.+.+++|.+||.|.. +|+++
T Consensus        58 -~~gl~~~i~~~~~~~~pilGiC~G~Q-~l~~~   88 (210)
T PRK14004         58 -STGLRSTIDKHVESGKPLFGICIGFQ-ILFES   88 (210)
T ss_pred             -HcCcHHHHHHHHHcCCCEEEECHhHH-HHHHh
Confidence             23578899999999999999999755 67775

>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional

Probab=93.20  E-value=0.43  Score=48.74  Aligned_cols=88  Identities=18%  Similarity=0.082  Sum_probs=59.3

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR  163 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~  163 (472)
                      .+||+++=+ |+.    ..++..|++.|+++.++..+..                .++....++|.|++.||...+.   
T Consensus       192 ~~~I~viD~-g~k----~ni~~~L~~~G~~v~vvp~~~~----------------~~~i~~~~~dgIilSgGPg~p~---  247 (382)
T CHL00197        192 QLKIIVIDF-GVK----YNILRRLKSFGCSITVVPATSP----------------YQDILSYQPDGILLSNGPGDPS---  247 (382)
T ss_pred             CCEEEEEEC-CcH----HHHHHHHHHCCCeEEEEcCCCC----------------HHHHhccCCCEEEEcCCCCChh---
Confidence            467777755 554    2478888999999988854321                1111122599999999843332   


Q ss_pred             CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      .....++.+++..+.+++|.+||-|-. +|+.+
T Consensus       248 ~~~~~i~~i~~~~~~~~PilGIClGhQ-lLa~a  279 (382)
T CHL00197        248 AIHYGIKTVKKLLKYNIPIFGICMGHQ-ILSLA  279 (382)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEcHHHH-HHHHH
Confidence            234567788888778899999999866 55544

>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=92.94  E-value=1.8  Score=44.97  Aligned_cols=222  Identities=13%  Similarity=0.106  Sum_probs=119.2

Q ss_pred             ccEEEEc-CCccccccccCChHHHHHHHHHHh-c--CCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC-Ccccc
Q 012037          147 FDLIALP-GGMPGSVRLRDCEILKKITSKQAE-E--KRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-FWAVK  221 (472)
Q Consensus       147 ~D~vivp-GG~~~~~~l~~~~~~~~~l~~~~~-~--~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~-~~~~~  221 (472)
                      +|++++= ||.-+.   ...-.+++-+|++.. .  ...+..-|+ ..-.++.+|=++.|- |=|..  ..|+. ....|
T Consensus       133 ~DvvivEIGGTVGD---IEslpFlEAiRQ~~~e~g~~n~~fiH~t-lvpyi~~~gE~KTKP-TQhSV--keLR~iGI~PD  205 (533)
T COG0504         133 ADVVIVEIGGTVGD---IESLPFLEAIRQLRLELGRENVLFIHVT-LVPYIAAAGELKTKP-TQHSV--KELRSIGIQPD  205 (533)
T ss_pred             CCEEEEEeCCceec---ccccHHHHHHHHHHhhhCcccEEEEEEe-cceeecccCccCCCC-chHHH--HHHHhcCCCcc
Confidence            7888874 663221   133456677776542 2  234444455 355678888777654 22321  11221 00000


Q ss_pred             ----------------C--cE--EEeCCEEeCCCCCChHHHHHHHHHHHhCchhHHhhhhccccc-cCCcc-hhhhcccc
Q 012037          222 ----------------S--NI--HVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMH-NADNS-LKKEEFNE  279 (472)
Q Consensus       222 ----------------~--~~--v~Dg~iiTa~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~-~~~~~-~~~~~~n~  279 (472)
                                      +  .+  |....+|++-...+..+.-+    .+..+.+.+.+.+.|-++ ...+. .|.+-.+.
T Consensus       206 iii~Rs~~~l~~~~~~KIAlfc~V~~~~Vi~~~Dv~siY~vPl----~l~~qgl~~~i~~~l~l~~~~~dl~~W~~~v~~  281 (533)
T COG0504         206 ILICRSERPLPEEERRKIALFCNVPEEAVISAPDVESIYEVPL----LLEKQGLDDYILERLNLNAPEPDLSEWKDLVDK  281 (533)
T ss_pred             eEEEecCCCCCHHHHHHHHHhcCCCHHHeEecccHHHHHHhHH----HHHHcchHHHHHHHhCCCCCCcchHHHHHHHHH
Confidence                            0  01  12245666655444444333    445566677777788885 33222 24433333


Q ss_pred             cccccCCCCEEEEEeCCCCCHHHHHHHHHHHHhCC----CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEE
Q 012037          280 VEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAK----VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIIL  355 (472)
Q Consensus       280 ~~~~~~~~~~V~il~~~g~~~~e~~~~~d~l~~a~----~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~liv  355 (472)
                      +.. ..+..+|+++------.-.+..+.+.|..++    .++.+.-.+.. .+..      .....+..    .+|.++|
T Consensus       282 i~~-~~~~v~IalVGKYv~l~DaY~Sv~EAL~hag~~~~~~v~i~wIdse-~le~------~~~~~~~~----~~dgIlV  349 (533)
T COG0504         282 IKN-PKKEVTIALVGKYVELPDAYKSVIEALKHAGIALGVKVNIKWIDSE-DLEE------ENAAELEK----LVDGILV  349 (533)
T ss_pred             hcC-CCCceEEEEEECCcCchhHHHHHHHHHHhhhhhcCCceeeEEEccc-cccc------cchhhhhh----cCCEEEe
Confidence            332 1222567776433222335678899999987    34444433332 1111      00001111    2899999


Q ss_pred             cCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHH
Q 012037          356 PGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVL  395 (472)
Q Consensus       356 pGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lL  395 (472)
                      |||.+ .   +.-+.-+..++.+.+++.+..+||-|..+.
T Consensus       350 PGGFG-~---RG~eGkI~Ai~yAREn~iP~lGIClGmQ~a  385 (533)
T COG0504         350 PGGFG-Y---RGVEGKIAAIRYARENNIPFLGICLGMQLA  385 (533)
T ss_pred             CCCCC-c---CchHHHHHHHHHHHhcCCCEEEEchhHHHH
Confidence            99984 2   345667788888889999999999998753

>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)

Probab=92.51  E-value=0.42  Score=49.16  Aligned_cols=76  Identities=14%  Similarity=0.105  Sum_probs=55.0

Q ss_pred             HHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcC
Q 012037          303 IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAG  382 (472)
Q Consensus       303 ~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g  382 (472)
                      -..++..|+..|+++.++..+.                +.+++...++|.||+-||++.+.   ..+...+.+++.. .+
T Consensus       251 K~nIlr~L~~~G~~v~VvP~~~----------------~~~ei~~~~pDGIiLSnGPGDP~---~~~~~ie~ik~l~-~~  310 (415)
T PLN02771        251 KHNILRRLASYGCKITVVPSTW----------------PASEALKMKPDGVLFSNGPGDPS---AVPYAVETVKELL-GK  310 (415)
T ss_pred             HHHHHHHHHHcCCeEEEECCCC----------------CHHHHhhcCCCEEEEcCCCCChh---HhhHHHHHHHHHH-hC
Confidence            3678888888999998775443                22333224689999999975443   2355667777665 47


Q ss_pred             CeEEEEchhHHHHHHc
Q 012037          383 RIYGAVCSSPIVLHKH  398 (472)
Q Consensus       383 ~~v~aic~G~~lLA~a  398 (472)
                      .+|.+||-|-.+|+.+
T Consensus       311 iPIlGICLGhQlLa~A  326 (415)
T PLN02771        311 VPVFGICMGHQLLGQA  326 (415)
T ss_pred             CCEEEEcHHHHHHHHh
Confidence            8999999999999876

>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional

Probab=92.45  E-value=0.19  Score=48.54  Aligned_cols=51  Identities=18%  Similarity=0.134  Sum_probs=38.7

Q ss_pred             CcccEEEEcCCCcchh-------------cccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          348 SVYDLIILPGGVAGAE-------------RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       348 ~~~D~livpGG~~~~~-------------~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      +.+|.||++||..+..             ...++...+++|+.+.+++++|.+||-|..+|+.+
T Consensus        60 ~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva  123 (254)
T PRK11366         60 PKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVA  123 (254)
T ss_pred             HhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHH
Confidence            4589999999842221             11223456799999999999999999999999865

>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit

Probab=92.38  E-value=0.46  Score=48.19  Aligned_cols=86  Identities=23%  Similarity=0.164  Sum_probs=57.9

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccC
Q 012037           85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD  164 (472)
Q Consensus        85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~  164 (472)
                      +||+++=+ |+.    ...+..|++.|+++.++..+.  .              +++.....+|.|||.||...+.   .
T Consensus       174 ~~i~viD~-G~k----~ni~~~L~~~G~~v~vvp~~~--~--------------~~~i~~~~pDGIiLSgGPgdp~---~  229 (358)
T TIGR01368       174 KRVVVIDF-GVK----QNILRRLVKRGCEVTVVPYDT--D--------------AEEIKKYNPDGIFLSNGPGDPA---A  229 (358)
T ss_pred             cEEEEEeC-CcH----HHHHHHHHHCCCEEEEEcCCC--C--------------HHHHHhhCCCEEEECCCCCCHH---H
Confidence            46776643 544    357888999999998775431  1              1122112469999999943332   3


Q ss_pred             ChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          165 CEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       165 ~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      +...++++++..+ +++|.+||-|.+ +|+.+
T Consensus       230 ~~~~i~~i~~~~~-~~PILGIClG~Q-lLa~a  259 (358)
T TIGR01368       230 VEPAIETIRKLLE-KIPIFGICLGHQ-LLALA  259 (358)
T ss_pred             HHHHHHHHHHHHc-CCCEEEECHHHH-HHHHH
Confidence            4667888998887 899999999866 55553

This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.

>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase

Probab=91.87  E-value=0.6  Score=45.59  Aligned_cols=79  Identities=22%  Similarity=0.257  Sum_probs=47.9

Q ss_pred             HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh---cccccHHHHHHHHHHHHc
Q 012037          305 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE---RLQKSRILKKLLKEQKVA  381 (472)
Q Consensus       305 ~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~---~~~~~~~l~~~L~~~~~~  381 (472)
                      .-++.+..+|.+|..+-.+..             ...+++. .+.+|.|++|||.....   .......++++..+..++
T Consensus        24 ~Yv~~l~~aG~~vvpi~~~~~-------------~~~l~~~-l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~   89 (273)
T cd01747          24 SYVKFLESAGARVVPIWINES-------------EEYYDKL-FKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDA   89 (273)
T ss_pred             HHHHHHHHCCCeEEEEEeCCc-------------HHHHHHH-HhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhc
Confidence            456777888888765544321             1123331 15689999999853222   122223344444444455


Q ss_pred             C--CeEEEEchhHHHHHH
Q 012037          382 G--RIYGAVCSSPIVLHK  397 (472)
Q Consensus       382 g--~~v~aic~G~~lLA~  397 (472)
                      |  .+|.++|-|..+|+.
T Consensus        90 g~~~Pv~GiClG~QlL~~  107 (273)
T cd01747          90 GDYFPVWGTCLGFELLTY  107 (273)
T ss_pred             CCCCcEEEEcHHHHHHHH
Confidence            5  799999999998876

Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase

Probab=91.87  E-value=1.8  Score=40.67  Aligned_cols=102  Identities=18%  Similarity=0.221  Sum_probs=64.5

Q ss_pred             CCCEEEEEeCCCCCHHHH-HHHHHHHHhCCC-eEEEEEecCCcceecCCCcEEeecCC-ccccCCCcccEEEEcCCCcch
Q 012037          286 RMPRVLIPIANGSEEIEI-VTIVDILRRAKV-DVVVASVERSTQIVASQGVKIIADKS-ISDAAESVYDLIILPGGVAGA  362 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~-~~~~d~l~~a~~-~v~~vs~~~~~~v~s~~G~~v~~d~~-l~~~~~~~~D~livpGG~~~~  362 (472)
                      ...||+++-+.+...-+. -...+.|++.|+ +++++..... .        -..+.. .+.+  .+.|+|++.||....
T Consensus        28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~-~--------~a~~~~~~~~l--~~ad~I~~~GG~~~~   96 (217)
T cd03145          28 AGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSR-E--------AANDPEVVARL--RDADGIFFTGGDQLR   96 (217)
T ss_pred             CCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCCh-H--------HcCCHHHHHHH--HhCCEEEEeCCcHHH
Confidence            346888887776543333 335667777776 4555544321 1        000111 1223  678999999996311


Q ss_pred             -hcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          363 -ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       363 -~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                       ........+.+.|++..++|.++++..+|+.++...
T Consensus        97 ~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~~~  133 (217)
T cd03145          97 ITSALGGTPLLDALRKVYRGGVVIGGTSAGAAVMSDT  133 (217)
T ss_pred             HHHHHcCChHHHHHHHHHHcCCEEEEccHHHHhhhhc
Confidence             112345578889999999999999999999998654

Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.

>PRK06186 hypothetical protein; Validated

Probab=91.82  E-value=1.2  Score=42.19  Aligned_cols=86  Identities=17%  Similarity=0.082  Sum_probs=56.3

Q ss_pred             EEEEEeCCCCc-HHHHHHHHHHHHhC----CCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc
Q 012037           86 KVLVPVGFGTE-EMEAVIIVDVLRRA----GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV  160 (472)
Q Consensus        86 kV~ill~~g~~-~~e~~~~~~~l~~a----g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~  160 (472)
                      +|+++ ..-.+ ...+..+.+.|+-+    +..+++...+.. .+..        +.     ....+|.|+||||++ . 
T Consensus         3 ~IalV-GKY~~~~daY~Sv~eal~ha~~~~~~~~~i~wi~s~-~l~~--------~~-----~l~~~dgilvpgGfg-~-   65 (229)
T PRK06186          3 RIALV-GDYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTP-EITD--------PE-----DLAGFDGIWCVPGSP-Y-   65 (229)
T ss_pred             EEEEE-ECCcCCcHHHHHHHHHHHHHHHhcCCeeEEEEEchh-hcCC--------hh-----hHhhCCeeEeCCCCC-c-
Confidence            56644 33222 35567788888876    456666555432 2211        11     133789999999963 2 


Q ss_pred             cccCChHHHHHHHHHHhcCCeEEEEchhhH
Q 012037          161 RLRDCEILKKITSKQAEEKRLYGAICAAPA  190 (472)
Q Consensus       161 ~l~~~~~~~~~l~~~~~~~k~I~aic~g~~  190 (472)
                        +.-+--+..++.+.++++|+.+||-|-+
T Consensus        66 --rg~~Gki~ai~~Are~~iP~LGIClGmQ   93 (229)
T PRK06186         66 --RNDDGALTAIRFARENGIPFLGTCGGFQ   93 (229)
T ss_pred             --ccHhHHHHHHHHHHHcCCCeEeechhhH
Confidence              3446677789999999999999999755

>PRK05380 pyrG CTP synthetase; Validated

Probab=91.79  E-value=0.88  Score=48.22  Aligned_cols=92  Identities=15%  Similarity=0.179  Sum_probs=57.5

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCC----CEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAG----AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS  159 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag----~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~  159 (472)
                      ..+||++=----....+..+.++|+.++    ..+++...+.- .++..        ...+..  ..+|.|++|||++ .
T Consensus       288 ~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse-~l~~~--------~~~~~L--~~~DGIIlpGGfG-~  355 (533)
T PRK05380        288 EVTIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSE-DLEEE--------NVAELL--KGVDGILVPGGFG-E  355 (533)
T ss_pred             ceEEEEEeCccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChh-hccCc--------chhhHh--hcCCEEEecCCCC-c
Confidence            4567766321112345777888888774    45565555532 22211        011122  3699999999953 2


Q ss_pred             ccccCChHHHHHHHHHHhcCCeEEEEchhhH
Q 012037          160 VRLRDCEILKKITSKQAEEKRLYGAICAAPA  190 (472)
Q Consensus       160 ~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~  190 (472)
                      .   ..+..+++++.+.++++++.+||-|-+
T Consensus       356 ~---~~~g~i~~i~~a~e~~iPiLGIClGmQ  383 (533)
T PRK05380        356 R---GIEGKILAIRYARENNIPFLGICLGMQ  383 (533)
T ss_pred             c---ccccHHHHHHHHHHCCCcEEEEchHHH
Confidence            2   234567889999999999999999765

>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=91.64  E-value=0.64  Score=49.97  Aligned_cols=86  Identities=10%  Similarity=0.117  Sum_probs=56.6

Q ss_pred             EeCCCCCHHHHHHHHHHHHhCCCe-EEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHH
Q 012037          293 PIANGSEEIEIVTIVDILRRAKVD-VVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRIL  371 (472)
Q Consensus       293 l~~~g~~~~e~~~~~d~l~~a~~~-v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l  371 (472)
                      ++-|..+.... .+++.|++.+.+ +.++-++.-               .++++...++|.||+.||+..+.+.   ...
T Consensus         3 l~idn~dsft~-nl~~~l~~~g~~~v~~~~~~~~---------------~~~~~~~~~~d~vIlsgGP~~p~~~---~~~   63 (534)
T PRK14607          3 ILIDNYDSFTY-NIYQYIGELGPEEIEVVRNDEI---------------TIEEIEALNPSHIVISPGPGRPEEA---GIS   63 (534)
T ss_pred             EEEECchhHHH-HHHHHHHHcCCCeEEEECCCCC---------------CHHHHHhcCCCEEEECCCCCChhhC---Ccc
Confidence            34454444444 478888888875 665544431               2334333468999999998654433   234


Q ss_pred             HHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          372 KKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       372 ~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      .++++.+ ..+.+|.+||-|-.+|+.+
T Consensus        64 ~~li~~~-~~~~PvLGIClG~QlLa~a   89 (534)
T PRK14607         64 VEVIRHF-SGKVPILGVCLGHQAIGYA   89 (534)
T ss_pred             HHHHHHh-hcCCCEEEEcHHHHHHHHH
Confidence            5667664 5789999999999999876

>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed

Probab=91.59  E-value=0.43  Score=48.30  Aligned_cols=87  Identities=17%  Similarity=0.101  Sum_probs=57.7

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR  163 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~  163 (472)
                      .++|+++=+ |+    -..+++.|++.|+.+.++..+..                .++.....+|.|+++||..++.   
T Consensus       167 ~~~V~viD~-G~----k~ni~~~L~~~G~~v~vvp~~~~----------------~~~i~~~~~DGIiLsgGPgdp~---  222 (354)
T PRK12838        167 GKHVALIDF-GY----KKSILRSLSKRGCKVTVLPYDTS----------------LEEIKNLNPDGIVLSNGPGDPK---  222 (354)
T ss_pred             CCEEEEECC-CH----HHHHHHHHHHCCCeEEEEECCCC----------------HHHHhhcCCCEEEEcCCCCChH---
Confidence            356666533 43    35677888888999988865421                0111112599999999943332   


Q ss_pred             CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      +.....+++++.+++ ++|.+||-|-+ +|+.+
T Consensus       223 ~~~~~~~~i~~~~~~-~PvlGIClG~Q-lLa~a  253 (354)
T PRK12838        223 ELQPYLPEIKKLISS-YPILGICLGHQ-LIALA  253 (354)
T ss_pred             HhHHHHHHHHHHhcC-CCEEEECHHHH-HHHHH
Confidence            345677888888877 99999999766 56653

>PRK00074 guaA GMP synthase; Reviewed

Probab=90.60  E-value=0.66  Score=49.56  Aligned_cols=89  Identities=17%  Similarity=0.075  Sum_probs=56.5

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ  366 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~  366 (472)
                      +.+|+|+=|-.-.   .-.+...+++.|...+++..+..                .+++...++|.||++||...... .
T Consensus         3 ~~~i~vlD~Gsq~---~~li~r~lrelg~~~~v~p~~~~----------------~~~l~~~~~dgIIlsGGp~sv~~-~   62 (511)
T PRK00074          3 HDKILILDFGSQY---TQLIARRVRELGVYSEIVPYDIS----------------AEEIRAFNPKGIILSGGPASVYE-E   62 (511)
T ss_pred             CCEEEEEECCCCc---HHHHHHHHHHCCCeEEEEECCCC----------------HHHHhccCCCEEEECCCCccccc-C
Confidence            4568887663322   23467788888988877754331                23332235699999999743222 1


Q ss_pred             ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          367 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       367 ~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      ..+.+   .+...+.+.+|.+||-|..+|+.+
T Consensus        63 ~~p~~---~~~i~~~~~PvLGIC~G~QlLa~~   91 (511)
T PRK00074         63 GAPRA---DPEIFELGVPVLGICYGMQLMAHQ   91 (511)
T ss_pred             CCccc---cHHHHhCCCCEEEECHHHHHHHHH
Confidence            12222   234456799999999999999874

>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase

Probab=90.34  E-value=0.42  Score=45.61  Aligned_cols=43  Identities=23%  Similarity=0.231  Sum_probs=34.1

Q ss_pred             cccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHh
Q 012037          146 VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVT  192 (472)
Q Consensus       146 ~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~l  192 (472)
                      .+|.|+++||. +..   .......++++.++.++++.+||.|-+.+
T Consensus        55 ~~dgivl~GG~-~~~---~~~~~~~~i~~~~~~~~PvlGIClG~Q~l   97 (235)
T cd01746          55 GADGILVPGGF-GIR---GVEGKILAIKYARENNIPFLGICLGMQLA   97 (235)
T ss_pred             cCCEEEECCCC-CCc---chhhHHHHHHHHHHCCceEEEEEhHHHHH
Confidence            69999999994 332   23466788999999999999999986643

Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th

>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=90.29  E-value=0.18  Score=44.74  Aligned_cols=82  Identities=16%  Similarity=0.148  Sum_probs=53.5

Q ss_pred             HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch-hcccccHHHHHHHHHHHHcCC
Q 012037          305 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA-ERLQKSRILKKLLKEQKVAGR  383 (472)
Q Consensus       305 ~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~-~~~~~~~~l~~~L~~~~~~g~  383 (472)
                      ...+.|++.|++++.+..... .          .+...+.+  .+.|+|++.||.... ....++..+.+.|++..++|+
T Consensus         4 ~~~~~f~~~g~~v~~l~~~~~-~----------~~~~~~~i--~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~   70 (154)
T PF03575_consen    4 KFRKAFRKLGFEVDQLDLSDR-N----------DADILEAI--READAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGG   70 (154)
T ss_dssp             HHHHHHHHCT-EEEECCCTSC-G----------HHHHHHHH--HHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTS
T ss_pred             HHHHHHHHCCCEEEEEeccCC-C----------hHHHHHHH--HhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCC
Confidence            467888999988777665542 0          01122333  578999999996311 112345568899999999999


Q ss_pred             eEEEEchhHHHHHHcC
Q 012037          384 IYGAVCSSPIVLHKHG  399 (472)
Q Consensus       384 ~v~aic~G~~lLA~aG  399 (472)
                      +|++..+|+.++...+
T Consensus        71 vi~G~SAGA~i~~~~~   86 (154)
T PF03575_consen   71 VIIGTSAGAMILGPSI   86 (154)
T ss_dssp             EEEEETHHHHCTSSBS
T ss_pred             EEEEEChHHhhccCce
Confidence            9999999998865443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.

>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade

Probab=89.80  E-value=1.7  Score=48.48  Aligned_cols=47  Identities=13%  Similarity=0.087  Sum_probs=33.0

Q ss_pred             CcccEEEEcCCCcchhcccccHHHHHHHHHHHHc----CCeEEEEchhHHHHHHc
Q 012037          348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVA----GRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       348 ~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~----g~~v~aic~G~~lLA~a  398 (472)
                      ..||.|||.||++.+.    +..-..++++..+.    +.+|.+||-|..+|+.+
T Consensus        52 ~~~D~VVIspGPG~p~----~~~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a  102 (742)
T TIGR01823        52 PLFDAIVVGPGPGNPN----NAQDMGIISELWELANLDEVPVLGICLGFQSLCLA  102 (742)
T ss_pred             cCCCEEEECCCCCCcc----chhhhHHHHHHHHhcccCCCcEEEEchhhHHHHhh
Confidence            5799999999875432    22234445544443    58999999999999876

This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=89.74  E-value=0.27  Score=51.96  Aligned_cols=50  Identities=16%  Similarity=0.072  Sum_probs=37.2

Q ss_pred             cccEEEEcCCcccccc--ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          146 VFDLIALPGGMPGSVR--LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       146 ~~D~vivpGG~~~~~~--l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ++|+|++|||......  +..+..+.+.|+++.+.|++|.++|.| ..+|.+.
T Consensus       284 ~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG-~q~Lg~~  335 (475)
T TIGR00313       284 GCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGG-YQMLGKE  335 (475)
T ss_pred             cCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHH-HHHhhhh
Confidence            6899999999632222  223445788899999999999999996 5567664

>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional

Probab=89.67  E-value=0.52  Score=45.56  Aligned_cols=50  Identities=20%  Similarity=0.128  Sum_probs=35.6

Q ss_pred             cccEEEEcCCccccc--------c-----ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          146 VFDLIALPGGMPGSV--------R-----LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       146 ~~D~vivpGG~~~~~--------~-----l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      .+|.|+++||..+..        .     ...|...+++++.+++++++|.+||-|-+ +|+.+
T Consensus        61 ~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Q-llnva  123 (254)
T PRK11366         61 KLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQ-ELVVA  123 (254)
T ss_pred             hCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHH-HHHHH
Confidence            599999999832221        0     01123557899999999999999999766 56554

>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins

Probab=89.22  E-value=2.1  Score=39.92  Aligned_cols=100  Identities=17%  Similarity=0.138  Sum_probs=61.7

Q ss_pred             CCCEEEEEeCCCCCHHH-HHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecC-CccccCCCcccEEEEcCCCcch-
Q 012037          286 RMPRVLIPIANGSEEIE-IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADK-SISDAAESVYDLIILPGGVAGA-  362 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e-~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~-~l~~~~~~~~D~livpGG~~~~-  362 (472)
                      ...||+++-......-+ .-...+.|++.|.++..+-.-..           ..+. ..+.+  .+.|+|+++||.... 
T Consensus        28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~-----------~~~~~~~~~l--~~ad~I~~~GG~~~~~   94 (210)
T cd03129          28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDT-----------ANDPDVVARL--LEADGIFVGGGNQLRL   94 (210)
T ss_pred             CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCC-----------CCCHHHHHHH--hhCCEEEEcCCcHHHH
Confidence            34678888776544333 34566788888876664432210           0111 12223  678999999996311 


Q ss_pred             hcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          363 ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       363 ~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      ....+...+.+.|++..++|.++++.|+|+.++...
T Consensus        95 ~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~~~~~  130 (210)
T cd03129          95 LSVLRETPLLDAILKRVARGVVIGGTSAGAAVMGET  130 (210)
T ss_pred             HHHHHhCChHHHHHHHHHcCCeEEEcCHHHHHhhhc
Confidence            011222335555666666999999999999999984

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from

>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=89.09  E-value=1.4  Score=40.14  Aligned_cols=86  Identities=17%  Similarity=0.203  Sum_probs=56.5

Q ss_pred             EEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHH
Q 012037           89 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL  168 (472)
Q Consensus        89 ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~  168 (472)
                      ||+-|+++-.. ..+++.|++.|+++.++-.+.- .        +      ......++|+|+|--|. +...  +....
T Consensus         4 IL~IDNyDSFt-yNLv~yl~~lg~~v~V~rnd~~-~--------~------~~~~~~~pd~iviSPGP-G~P~--d~G~~   64 (191)
T COG0512           4 ILLIDNYDSFT-YNLVQYLRELGAEVTVVRNDDI-S--------L------ELIEALKPDAIVISPGP-GTPK--DAGIS   64 (191)
T ss_pred             EEEEECccchH-HHHHHHHHHcCCceEEEECCcc-C--------H------HHHhhcCCCEEEEcCCC-CChH--HcchH
Confidence            34456655544 4688999999988887776521 1        1      12222358999997773 3322  44667


Q ss_pred             HHHHHHHHhcCCeEEEEchhhHHhhhc
Q 012037          169 KKITSKQAEEKRLYGAICAAPAVTLLP  195 (472)
Q Consensus       169 ~~~l~~~~~~~k~I~aic~g~~~lLa~  195 (472)
                      .+.|+++ ...++|.+||-|-+ .+++
T Consensus        65 ~~~i~~~-~~~~PiLGVCLGHQ-ai~~   89 (191)
T COG0512          65 LELIRRF-AGRIPILGVCLGHQ-AIAE   89 (191)
T ss_pred             HHHHHHh-cCCCCEEEECccHH-HHHH
Confidence            8888877 67789999999755 5554

>PRK05368 homoserine O-succinyltransferase; Provisional

Probab=88.80  E-value=2  Score=42.43  Aligned_cols=112  Identities=17%  Similarity=0.219  Sum_probs=60.0

Q ss_pred             CCCCCcEEEEEeC-CCCcHHHHHHHHHHHHhC--CCEEEEEeeCCCcceeccCCceee-eCCCcCCCCCCcccEEEEcCC
Q 012037           80 SAVPPKKVLVPVG-FGTEEMEAVIIVDVLRRA--GAQVTMASVEPQLEVEASSGTRLV-ADTSISNCSHQVFDLIALPGG  155 (472)
Q Consensus        80 ~~~~~~kV~ill~-~g~~~~e~~~~~~~l~~a--g~~v~~vs~~~g~~v~~~~G~~v~-~d~~~~~~~~~~~D~vivpGG  155 (472)
                      ..+++.||+||=. +.-...| ..+...|...  .++++++....- .-....-..+. --.+++++....||++||.|.
T Consensus        31 qdirpl~i~ilNlMp~k~~TE-~q~~rll~~~~~qv~v~~~~~~~h-~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGA  108 (302)
T PRK05368         31 QDIRPLKILILNLMPKKIETE-TQFLRLLGNTPLQVDIHLLRIDSH-ESKNTPAEHLENFYCTFEDIKDEKFDGLIITGA  108 (302)
T ss_pred             ccCCCccEEEEeCCCCCchHH-HHHHHHhcCCCceEEEEEEecCCc-CCCCCCHHHHHHhccCHHHhccCCCCEEEEcCC
Confidence            3566789999843 4444444 3444444333  355666665532 11111111111 123555565568999999998


Q ss_pred             ccccccccCC---hHHHHHHHHHHhcCCeEEEEchhhHHhh
Q 012037          156 MPGSVRLRDC---EILKKITSKQAEEKRLYGAICAAPAVTL  193 (472)
Q Consensus       156 ~~~~~~l~~~---~~~~~~l~~~~~~~k~I~aic~g~~~lL  193 (472)
                      ........+.   +++.++++...++++.+..||-|...++
T Consensus       109 p~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a  149 (302)
T PRK05368        109 PVEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAAL  149 (302)
T ss_pred             CCCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHH
Confidence            4221111111   2344455545567999999999866444

>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]

Probab=88.72  E-value=3.5  Score=37.89  Aligned_cols=96  Identities=14%  Similarity=0.166  Sum_probs=59.6

Q ss_pred             CCEEEEEeCCCCCH---HHHHHHH----HHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCC
Q 012037          287 MPRVLIPIANGSEE---IEIVTIV----DILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGV  359 (472)
Q Consensus       287 ~~~V~il~~~g~~~---~e~~~~~----d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~  359 (472)
                      .+|++++..+-=..   -.+.+..    ..|...|-.|++.-.-.|         .++-   .+|.  +.||.++|.|..
T Consensus         4 ~kr~Alf~at~dsefvk~~yGgy~nvfvsllg~ege~wd~frV~~g---------efP~---~~Dl--~ky~gfvIsGS~   69 (245)
T KOG3179|consen    4 QKRIALFLATPDSEFVKKAYGGYFNVFVSLLGDEGEQWDLFRVIDG---------EFPQ---EEDL--EKYDGFVISGSK   69 (245)
T ss_pred             ceeEEEEecCCchhhhhhhhcCHHHHHHHHhcccCceeEEEEEecC---------CCCC---hhhh--hhhceEEEeCCc
Confidence            46888887752111   1122333    344455666766655443         1211   2333  679999999976


Q ss_pred             cchhccccc---HHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          360 AGAERLQKS---RILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       360 ~~~~~~~~~---~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      .++  +...   .+|..++++.....+.|.+||-|=.++|++
T Consensus        70 ~dA--f~d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiara  109 (245)
T KOG3179|consen   70 HDA--FSDADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARA  109 (245)
T ss_pred             ccc--cccchHHHHHHHHHHHHHhhccceEEEeccHHHHHHh
Confidence            432  2222   256777888877789999999999999876

>PLN02347 GMP synthetase

Probab=88.59  E-value=3.5  Score=44.27  Aligned_cols=91  Identities=15%  Similarity=0.094  Sum_probs=53.8

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccC
Q 012037           85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD  164 (472)
Q Consensus        85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~  164 (472)
                      .+|+|+=+.+-.   ...+...|++.|+.+.++..+..                .++.....+|+||++||. +.....+
T Consensus        11 ~~IlIID~G~~~---t~~I~r~lrelgv~~~v~p~~~~----------------~~~i~~~~~dgIILsGGP-~sv~~~~   70 (536)
T PLN02347         11 DVVLILDYGSQY---THLITRRVRELGVYSLLLSGTAS----------------LDRIASLNPRVVILSGGP-HSVHVEG   70 (536)
T ss_pred             CEEEEEECCCcH---HHHHHHHHHHCCCeEEEEECCCC----------------HHHHhcCCCCEEEECCCC-CcccccC
Confidence            467766443322   23457888899988887764421                111111258999999994 3222222


Q ss_pred             ChHHH-HHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          165 CEILK-KITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       165 ~~~~~-~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      .+.+. .+++...+.+++|.+||-|-+ +|+.+
T Consensus        71 ~p~~~~~i~~~~~~~~iPILGIClG~Q-lLa~a  102 (536)
T PLN02347         71 APTVPEGFFDYCRERGVPVLGICYGMQ-LIVQK  102 (536)
T ss_pred             CchhhHHHHHHHHhcCCcEEEECHHHH-HHHHH
Confidence            23222 333333457899999999766 66664

>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=88.14  E-value=1.5  Score=46.97  Aligned_cols=90  Identities=14%  Similarity=0.068  Sum_probs=54.1

Q ss_pred             EEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHH
Q 012037           89 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL  168 (472)
Q Consensus        89 ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~  168 (472)
                      ||+-|..+... ..+.+.|++.|+++.++..+.  +          .+..+++....++|.||+-||...+....    .
T Consensus         4 iLiIDn~dsft-~nl~~~lr~~g~~v~V~~~~~--~----------~~~~~~~l~~~~~~~IIlSpGPg~p~d~~----~   66 (531)
T PRK09522          4 ILLLDNIDSFT-YNLADQLRSNGHNVVIYRNHI--P----------AQTLIERLATMSNPVLMLSPGPGVPSEAG----C   66 (531)
T ss_pred             EEEEeCCChHH-HHHHHHHHHCCCCEEEEECCC--C----------CccCHHHHHhcCcCEEEEcCCCCChhhCC----C
Confidence            34445554444 457888899999998888552  1          01122222222588999988854443221    2


Q ss_pred             HHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          169 KKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       169 ~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ..++.+.++.+++|.+||-|-+ +|+.+
T Consensus        67 ~~~i~~~~~~~iPILGIClG~Q-lLa~a   93 (531)
T PRK09522         67 MPELLTRLRGKLPIIGICLGHQ-AIVEA   93 (531)
T ss_pred             CHHHHHHHhcCCCEEEEcHHHH-HHHHh
Confidence            2333444567899999999866 56654

>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A

Probab=88.03  E-value=0.99  Score=29.86  Aligned_cols=27  Identities=33%  Similarity=0.223  Sum_probs=19.7

Q ss_pred             cEEEEEeCC-----------CCcHHHHHHHHHHHHhCC
Q 012037           85 KKVLVPVGF-----------GTEEMEAVIIVDVLRRAG  111 (472)
Q Consensus        85 ~kV~ill~~-----------g~~~~e~~~~~~~l~~ag  111 (472)
                      |||+|++..           |+...|++.|+++|+++|
T Consensus         1 kkiLiV~Ts~~~~~~~~~~TG~wl~E~~hpy~~f~~aG   38 (38)
T PF13587_consen    1 KKILIVVTSHDKLGDTGRPTGFWLSELAHPYYVFTDAG   38 (38)
T ss_dssp             SEEEEEE---SEECTTTEE--B-HHHHHHHHHHHHHTT
T ss_pred             CeEEEEEcCcccccCCCCcceeccHHHhhHHHHHHHCc
Confidence            467777643           889999999999999886

>TIGR02069 cyanophycinase cyanophycinase

Probab=87.93  E-value=2.4  Score=40.85  Aligned_cols=101  Identities=20%  Similarity=0.204  Sum_probs=64.4

Q ss_pred             CCCEEEEEeCCCCCHHH-HHHHHHHHHhCCC-eEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch-
Q 012037          286 RMPRVLIPIANGSEEIE-IVTIVDILRRAKV-DVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA-  362 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e-~~~~~d~l~~a~~-~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~-  362 (472)
                      ...||+|+-.-.....+ .-...+.|+..|+ +++++..... .       .-..+...+.+  ...|+|++.||.... 
T Consensus        27 ~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r-~-------~a~~~~~~~~l--~~ad~I~~~GGnq~~l   96 (250)
T TIGR02069        27 EDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVRER-E-------DASDENAIALL--SNATGIFFTGGDQLRI   96 (250)
T ss_pred             CCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCCh-H-------HccCHHHHHHH--hhCCEEEEeCCCHHHH
Confidence            34689988765444333 3456678888887 4666655321 0       00001112223  568999999996210 


Q ss_pred             hcccccHHHHHHHHHHHHcCCeEEEEchhHHHHH
Q 012037          363 ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLH  396 (472)
Q Consensus       363 ~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA  396 (472)
                      ....+...+.+.|++.+++|.++++..+|+.++.
T Consensus        97 ~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~  130 (250)
T TIGR02069        97 TSLLGDTPLLDRLRKRVHEGIILGGTSAGAAVMS  130 (250)
T ss_pred             HHHHcCCcHHHHHHHHHHcCCeEEEccHHHHhcc
Confidence            1123456788899999999999999999998764

This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.

>COG3340 PepE Peptidase E [Amino acid transport and metabolism]

Probab=87.58  E-value=1.3  Score=41.00  Aligned_cols=96  Identities=14%  Similarity=0.143  Sum_probs=66.4

Q ss_pred             CCEEEEEeCCCCCHH---HHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccC--CCcccEEEEcCCCcc
Q 012037          287 MPRVLIPIANGSEEI---EIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA--ESVYDLIILPGGVAG  361 (472)
Q Consensus       287 ~~~V~il~~~g~~~~---e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~--~~~~D~livpGG~~~  361 (472)
                      .++|+++-+-+....   =+....++|..-|..+.-++....               ..+++.  ..+-|+|+|.||.  
T Consensus        32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~---------------~~~~Ie~~l~~~d~IyVgGGN--   94 (224)
T COG3340          32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKP---------------PLAAIENKLMKADIIYVGGGN--   94 (224)
T ss_pred             CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCC---------------CHHHHHHhhhhccEEEECCch--
Confidence            568998877543322   345678888888888776655442               233331  1347999999985  


Q ss_pred             hhcc---cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC
Q 012037          362 AERL---QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG  399 (472)
Q Consensus       362 ~~~~---~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG  399 (472)
                      ...+   .+...+.+.||+..++|.++++..+|+.+-...+
T Consensus        95 TF~LL~~lke~gld~iIr~~vk~G~~YiG~SAGA~ia~p~I  135 (224)
T COG3340          95 TFNLLQELKETGLDDIIRERVKAGTPYIGWSAGANIAGPTI  135 (224)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHcCCceEEeccCceeecCce
Confidence            3332   3455688999999999999999999987655443

>COG3442 Predicted glutamine amidotransferase [General function prediction only]

Probab=87.46  E-value=0.76  Score=42.60  Aligned_cols=50  Identities=26%  Similarity=0.364  Sum_probs=37.6

Q ss_pred             CcccEEEEcCCCcchhccc-cc-HHHHHHHHHHHHcCCeEEEEchhHHHHHH
Q 012037          348 SVYDLIILPGGVAGAERLQ-KS-RILKKLLKEQKVAGRIYGAVCSSPIVLHK  397 (472)
Q Consensus       348 ~~~D~livpGG~~~~~~~~-~~-~~l~~~L~~~~~~g~~v~aic~G~~lLA~  397 (472)
                      +++|++++.||..-.+.+. ++ ..-.+-|+.+...|+++.+||.|..+|.+
T Consensus        51 ~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~  102 (250)
T COG3442          51 DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQ  102 (250)
T ss_pred             ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccc
Confidence            5799999988863333332 22 23456789999999999999999999974

>COG3442 Predicted glutamine amidotransferase [General function prediction only]

Probab=87.45  E-value=1.2  Score=41.34  Aligned_cols=50  Identities=22%  Similarity=0.156  Sum_probs=35.2

Q ss_pred             CcccEEEEcCCcccccccc-CC-hHHHHHHHHHHhcCCeEEEEchhhHHhhhc
Q 012037          145 QVFDLIALPGGMPGSVRLR-DC-EILKKITSKQAEEKRLYGAICAAPAVTLLP  195 (472)
Q Consensus       145 ~~~D~vivpGG~~~~~~l~-~~-~~~~~~l~~~~~~~k~I~aic~g~~~lLa~  195 (472)
                      ..||++++-||..-...+. ++ ..-.+-|+++...++++.+||.|.. +|.+
T Consensus        51 ~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~Q-lLG~  102 (250)
T COG3442          51 DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQ-LLGQ  102 (250)
T ss_pred             ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchh-hccc
Confidence            4799999988853222222 22 3455678899999999999999766 4554

>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=86.87  E-value=1.4  Score=47.28  Aligned_cols=87  Identities=9%  Similarity=0.042  Sum_probs=55.9

Q ss_pred             EEeCCCCcHHHHHHHHHHHHhCCCE-EEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChH
Q 012037           89 VPVGFGTEEMEAVIIVDVLRRAGAQ-VTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEI  167 (472)
Q Consensus        89 ill~~g~~~~e~~~~~~~l~~ag~~-v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~  167 (472)
                      ||+-|..+... ..+.+.|++.|.+ +.++-++.- .              +++.....+|+||+.||...+.   ++..
T Consensus         2 il~idn~dsft-~nl~~~l~~~g~~~v~~~~~~~~-~--------------~~~~~~~~~d~vIlsgGP~~p~---~~~~   62 (534)
T PRK14607          2 IILIDNYDSFT-YNIYQYIGELGPEEIEVVRNDEI-T--------------IEEIEALNPSHIVISPGPGRPE---EAGI   62 (534)
T ss_pred             EEEEECchhHH-HHHHHHHHHcCCCeEEEECCCCC-C--------------HHHHHhcCCCEEEECCCCCChh---hCCc
Confidence            56666666554 3588899998885 666655421 1              1122222589999999954443   2334


Q ss_pred             HHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          168 LKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       168 ~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ..++++. ..++++|.+||-|-+ +|+.+
T Consensus        63 ~~~li~~-~~~~~PvLGIClG~Q-lLa~a   89 (534)
T PRK14607         63 SVEVIRH-FSGKVPILGVCLGHQ-AIGYA   89 (534)
T ss_pred             cHHHHHH-hhcCCCEEEEcHHHH-HHHHH
Confidence            5677776 467899999999766 56653

>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]

Probab=86.68  E-value=1  Score=44.87  Aligned_cols=75  Identities=19%  Similarity=0.115  Sum_probs=56.5

Q ss_pred             HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCe
Q 012037          305 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI  384 (472)
Q Consensus       305 ~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~  384 (472)
                      .++..|...|+++.++-.                +.+.+++-...+|.||+--|++++.   .-+..++.+++.....++
T Consensus       192 nIlr~L~~rg~~vtVVP~----------------~t~~eeIl~~~pDGiflSNGPGDP~---~~~~~i~~ik~l~~~~iP  252 (368)
T COG0505         192 NILRELVKRGCRVTVVPA----------------DTSAEEILALNPDGIFLSNGPGDPA---PLDYAIETIKELLGTKIP  252 (368)
T ss_pred             HHHHHHHHCCCeEEEEcC----------------CCCHHHHHhhCCCEEEEeCCCCChh---HHHHHHHHHHHHhccCCC
Confidence            344556666777776643                3356665556799999999986553   346788999999988889


Q ss_pred             EEEEchhHHHHHHc
Q 012037          385 YGAVCSSPIVLHKH  398 (472)
Q Consensus       385 v~aic~G~~lLA~a  398 (472)
                      +.+||-|=.+||-|
T Consensus       253 ifGICLGHQllalA  266 (368)
T COG0505         253 IFGICLGHQLLALA  266 (368)
T ss_pred             eEEEcHHHHHHHHh
Confidence            99999999999865

>COG2071 Predicted glutamine amidotransferases [General function prediction only]

Probab=86.61  E-value=1.2  Score=42.00  Aligned_cols=50  Identities=18%  Similarity=0.228  Sum_probs=38.4

Q ss_pred             CcccEEEEcCCCcc--------------hhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHH
Q 012037          348 SVYDLIILPGGVAG--------------AERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK  397 (472)
Q Consensus       348 ~~~D~livpGG~~~--------------~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~  397 (472)
                      +-.|.|+++||..-              ..+..+|.--+.+||.+-+++++|.+||-|..+|.-
T Consensus        59 ~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~QllNV  122 (243)
T COG2071          59 DLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQLLNV  122 (243)
T ss_pred             hhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHHHHH
Confidence            45799999999420              111234556788999999999999999999998853

>TIGR00337 PyrG CTP synthase

Probab=86.25  E-value=4.2  Score=43.21  Aligned_cols=92  Identities=16%  Similarity=0.223  Sum_probs=55.8

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCC----EEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGA----QVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS  159 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~----~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~  159 (472)
                      ..+||++-----....+..+.+.|..+|+    .+.+...+.. .+..        . ..+..  ..+|.|++|||.+ .
T Consensus       289 ~v~IalVGKY~~~~daY~SI~eAL~~ag~~~~~~V~~~~i~se-~i~~--------~-~~~~L--~~~dGIiLpGG~G-~  355 (525)
T TIGR00337       289 EVTIGIVGKYVELKDSYLSVIEALKHAGAKLDTKVNIKWIDSE-DLEE--------E-GAEFL--KGVDGILVPGGFG-E  355 (525)
T ss_pred             CcEEEEEeCCcCCHHHHHHHHHHHHhCccccCCEEEEEEecHH-Hhhh--------h-hhhhh--cCCCEEEeCCCCC-C
Confidence            46788775322234457788999998876    2333322211 1110        0 00112  3689999999953 2


Q ss_pred             ccccCChHHHHHHHHHHhcCCeEEEEchhhHH
Q 012037          160 VRLRDCEILKKITSKQAEEKRLYGAICAAPAV  191 (472)
Q Consensus       160 ~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~  191 (472)
                      .   ..+..++.++.+.+++.++.+||-|-+.
T Consensus       356 ~---~~~g~i~ai~~a~e~~iP~LGIClG~Ql  384 (525)
T TIGR00337       356 R---GVEGKILAIKYARENNIPFLGICLGMQL  384 (525)
T ss_pred             h---hhcChHHHHHHHHHcCCCEEEEcHHHHH
Confidence            2   2344556778788899999999998653

CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).

>PRK05368 homoserine O-succinyltransferase; Provisional

Probab=86.14  E-value=1.6  Score=43.24  Aligned_cols=105  Identities=13%  Similarity=0.148  Sum_probs=60.8

Q ss_pred             CCCEEEEEeC-CCCCHHHHHHHHHHHHhCC--CeEEEEEecCCcceecCC-C--cEEeecCCccccCCCcccEEEEcCCC
Q 012037          286 RMPRVLIPIA-NGSEEIEIVTIVDILRRAK--VDVVVASVERSTQIVASQ-G--VKIIADKSISDAAESVYDLIILPGGV  359 (472)
Q Consensus       286 ~~~~V~il~~-~g~~~~e~~~~~d~l~~a~--~~v~~vs~~~~~~v~s~~-G--~~v~~d~~l~~~~~~~~D~livpGG~  359 (472)
                      ++.||+|+-. |.-...|. .+...|....  ++++++....- ..+... .  -++.  ..++++...+||.+||.|..
T Consensus        34 rpl~i~ilNlMp~k~~TE~-q~~rll~~~~~qv~v~~~~~~~h-~~~~~~~~hl~~~y--~~~~~i~~~~~DG~IITGAp  109 (302)
T PRK05368         34 RPLKILILNLMPKKIETET-QFLRLLGNTPLQVDIHLLRIDSH-ESKNTPAEHLENFY--CTFEDIKDEKFDGLIITGAP  109 (302)
T ss_pred             CCccEEEEeCCCCCchHHH-HHHHHhcCCCceEEEEEEecCCc-CCCCCCHHHHHHhc--cCHHHhccCCCCEEEEcCCC
Confidence            3578888854 44455554 4455554333  56777666542 111100 0  1111  25677766889999999986


Q ss_pred             cchhcccc------cHHHHHHHHHHHHcCCeEEEEchhHHHHHH
Q 012037          360 AGAERLQK------SRILKKLLKEQKVAGRIYGAVCSSPIVLHK  397 (472)
Q Consensus       360 ~~~~~~~~------~~~l~~~L~~~~~~g~~v~aic~G~~lLA~  397 (472)
                      .....+..      -.++++|++   +.+..+.+||-|..+++.
T Consensus       110 ~e~~~fedv~YW~El~~i~~w~~---~~~~s~LgICwGaQa~a~  150 (302)
T PRK05368        110 VEQLPFEDVDYWDELKEILDWAK---THVTSTLFICWAAQAALY  150 (302)
T ss_pred             CCCccCCCCchHHHHHHHHHHHH---HcCCCEEEEcHHHHHHHH
Confidence            43111111      234555655   458899999999988764

>PRK00074 guaA GMP synthase; Reviewed

Probab=85.70  E-value=3.5  Score=44.08  Aligned_cols=88  Identities=15%  Similarity=0.069  Sum_probs=53.6

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR  163 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~  163 (472)
                      +.+|+||=+.. .-  ...+...+++.|...+++..+..  .           ..+.+.   ++|+||++||...... .
T Consensus         3 ~~~i~vlD~Gs-q~--~~li~r~lrelg~~~~v~p~~~~--~-----------~~l~~~---~~dgIIlsGGp~sv~~-~   62 (511)
T PRK00074          3 HDKILILDFGS-QY--TQLIARRVRELGVYSEIVPYDIS--A-----------EEIRAF---NPKGIILSGGPASVYE-E   62 (511)
T ss_pred             CCEEEEEECCC-Cc--HHHHHHHHHHCCCeEEEEECCCC--H-----------HHHhcc---CCCEEEECCCCccccc-C
Confidence            45677776632 22  23457888999988888864421  0           111222   4799999999533322 1


Q ss_pred             CChHHHHHHHHHHhcCCeEEEEchhhHHhhhc
Q 012037          164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLP  195 (472)
Q Consensus       164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~  195 (472)
                      ..+.+   .+..++.+++|.+||-|-+ +|+.
T Consensus        63 ~~p~~---~~~i~~~~~PvLGIC~G~Q-lLa~   90 (511)
T PRK00074         63 GAPRA---DPEIFELGVPVLGICYGMQ-LMAH   90 (511)
T ss_pred             CCccc---cHHHHhCCCCEEEECHHHH-HHHH
Confidence            12222   3455678999999999766 5655

>PLN02327 CTP synthase

Probab=85.60  E-value=3.8  Score=43.69  Aligned_cols=101  Identities=18%  Similarity=0.186  Sum_probs=57.3

Q ss_pred             CcEEEEEeCCCCc-HHHHHHHHHHHHhC----CCEEEEEeeCCCcceeccCCceeeeCCCcCCC--CCCcccEEEEcCCc
Q 012037           84 PKKVLVPVGFGTE-EMEAVIIVDVLRRA----GAQVTMASVEPQLEVEASSGTRLVADTSISNC--SHQVFDLIALPGGM  156 (472)
Q Consensus        84 ~~kV~ill~~g~~-~~e~~~~~~~l~~a----g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~--~~~~~D~vivpGG~  156 (472)
                      ..+||++= .-.. ...+..+.++|+.+    +..+++...+.. .+... +..-.++ .++..  ....+|.|++|||.
T Consensus       297 ~v~IalVG-KY~~l~DAY~Si~eAL~hA~~~~~~~v~i~wI~se-~l~~~-~~~~~~~-~y~~~~~~L~~~DGIvvpGGf  372 (557)
T PLN02327        297 PVRIAMVG-KYTGLSDSYLSVLKALLHASVACSRKLVIDWVAAS-DLEDE-TAKETPD-AYAAAWKLLKGADGILVPGGF  372 (557)
T ss_pred             ceEEEEEe-cccCCcHhHHHHHHHHHHHHHHcCCeeEEEEEchh-hcCCc-ccccccc-hhhhhHHhhccCCEEEeCCCC
Confidence            45777764 2222 34467788888866    455665555432 22211 1000010 11111  13479999999995


Q ss_pred             cccccccCChHHHHHHHHHHhcCCeEEEEchhhHHh
Q 012037          157 PGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVT  192 (472)
Q Consensus       157 ~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~l  192 (472)
                      +. .   .....+..++.+.++++++.+||-|-+++
T Consensus       373 G~-~---~~~G~i~ai~~are~~iP~LGIClGmQl~  404 (557)
T PLN02327        373 GD-R---GVEGKILAAKYARENKVPYLGICLGMQIA  404 (557)
T ss_pred             CC-c---ccccHHHHHHHHHHcCCCEEEEcHHHHHH
Confidence            32 2   22344567777788999999999986543

>COG4285 Uncharacterized conserved protein [Function unknown]

Probab=85.33  E-value=4.8  Score=37.40  Aligned_cols=91  Identities=20%  Similarity=0.138  Sum_probs=59.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHhC---CCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037           85 KKVLVPVGFGTEEMEAVIIVDVLRRA---GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR  161 (472)
Q Consensus        85 ~kV~ill~~g~~~~e~~~~~~~l~~a---g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~  161 (472)
                      |+|.|.-..|++...+...++.|+.-   -|.|..|...   .        +.-+. +.+    .--+|++|||..-...
T Consensus         1 m~VlVYn~~GvSp~~lkhtv~sLr~~~~p~y~v~~V~~~---~--------Li~Ep-W~~----~T~lLV~pGGaDlpY~   64 (253)
T COG4285           1 MNVLVYNGLGVSPYSLKHTVRSLRLFAPPYYAVDRVDAQ---F--------LIKEP-WEE----TTLLLVFPGGADLPYV   64 (253)
T ss_pred             CceEEeCCCCCChHHHHHHHHHHHhhccchheEEEeeeh---e--------eecCc-chh----ceEEEEecCCCCchHH
Confidence            57888888899999999999888853   2455554322   1        22222 222    1347999999422222


Q ss_pred             ccCChHHHHHHHHHHhcCCeEEEEchhhHH
Q 012037          162 LRDCEILKKITSKQAEEKRLYGAICAAPAV  191 (472)
Q Consensus       162 l~~~~~~~~~l~~~~~~~k~I~aic~g~~~  191 (472)
                      ..-++.--+-|....++|....+||+|+.|
T Consensus        65 ~~l~g~g~a~i~~yvk~GG~fLGiCAG~YF   94 (253)
T COG4285          65 QVLQGLGTARIKNYVKEGGNFLGICAGGYF   94 (253)
T ss_pred             HHhcchhhhhHHHHHhcCCeEEEEeccccc
Confidence            223455556777788999999999998654

>COG4285 Uncharacterized conserved protein [Function unknown]

Probab=85.31  E-value=4.9  Score=37.30  Aligned_cols=91  Identities=16%  Similarity=0.155  Sum_probs=60.2

Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhCC---CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037          288 PRVLIPIANGSEEIEIVTIVDILRRAK---VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER  364 (472)
Q Consensus       288 ~~V~il~~~g~~~~e~~~~~d~l~~a~---~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~  364 (472)
                      |+|+|.--+|.....+-..+..|+.--   |.|..+  +++         .+..+ .+.    +.--+|++|||..-.-.
T Consensus         1 m~VlVYn~~GvSp~~lkhtv~sLr~~~~p~y~v~~V--~~~---------~Li~E-pW~----~~T~lLV~pGGaDlpY~   64 (253)
T COG4285           1 MNVLVYNGLGVSPYSLKHTVRSLRLFAPPYYAVDRV--DAQ---------FLIKE-PWE----ETTLLLVFPGGADLPYV   64 (253)
T ss_pred             CceEEeCCCCCChHHHHHHHHHHHhhccchheEEEe--eeh---------eeecC-cch----hceEEEEecCCCCchHH
Confidence            467777777999999999999988643   344433  332         22222 243    34578999999632221


Q ss_pred             ccccHHHHHHHHHHHHcCCeEEEEchhHHH
Q 012037          365 LQKSRILKKLLKEQKVAGRIYGAVCSSPIV  394 (472)
Q Consensus       365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~l  394 (472)
                      -.-+...-+.|..+.++|....+||+|..+
T Consensus        65 ~~l~g~g~a~i~~yvk~GG~fLGiCAG~YF   94 (253)
T COG4285          65 QVLQGLGTARIKNYVKEGGNFLGICAGGYF   94 (253)
T ss_pred             HHhcchhhhhHHHHHhcCCeEEEEeccccc
Confidence            122344456777888999999999999874

>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)

Probab=85.00  E-value=2.4  Score=43.74  Aligned_cols=76  Identities=14%  Similarity=0.030  Sum_probs=51.8

Q ss_pred             HHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcC
Q 012037          100 AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEK  179 (472)
Q Consensus       100 ~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~  179 (472)
                      -..++..|++.|+++.++..+.  +              .+++...++|.||+-||..++.   ..+...+.+++.. .+
T Consensus       251 K~nIlr~L~~~G~~v~VvP~~~--~--------------~~ei~~~~pDGIiLSnGPGDP~---~~~~~ie~ik~l~-~~  310 (415)
T PLN02771        251 KHNILRRLASYGCKITVVPSTW--P--------------ASEALKMKPDGVLFSNGPGDPS---AVPYAVETVKELL-GK  310 (415)
T ss_pred             HHHHHHHHHHcCCeEEEECCCC--C--------------HHHHhhcCCCEEEEcCCCCChh---HhhHHHHHHHHHH-hC
Confidence            3667888899999998886542  1              1111122599999999843332   3356677777766 47


Q ss_pred             CeEEEEchhhHHhhhcC
Q 012037          180 RLYGAICAAPAVTLLPW  196 (472)
Q Consensus       180 k~I~aic~g~~~lLa~a  196 (472)
                      ++|.+||-|-+ +|+.+
T Consensus       311 iPIlGICLGhQ-lLa~A  326 (415)
T PLN02771        311 VPVFGICMGHQ-LLGQA  326 (415)
T ss_pred             CCEEEEcHHHH-HHHHh
Confidence            89999999766 56654

>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins

Probab=84.86  E-value=2.9  Score=38.98  Aligned_cols=100  Identities=16%  Similarity=0.066  Sum_probs=60.6

Q ss_pred             CCcEEEEEeCCCCcHHH-HHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCC-CcCCCCCCcccEEEEcCCccc-c
Q 012037           83 PPKKVLVPVGFGTEEME-AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADT-SISNCSHQVFDLIALPGGMPG-S  159 (472)
Q Consensus        83 ~~~kV~ill~~g~~~~e-~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~-~~~~~~~~~~D~vivpGG~~~-~  159 (472)
                      ...||+++-.......+ .....+.|++.|+++..+-.-.  .         ..+. ..+.+  ...|+|+++||... .
T Consensus        28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~--~---------~~~~~~~~~l--~~ad~I~~~GG~~~~~   94 (210)
T cd03129          28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLID--T---------ANDPDVVARL--LEADGIFVGGGNQLRL   94 (210)
T ss_pred             CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccC--C---------CCCHHHHHHH--hhCCEEEEcCCcHHHH
Confidence            35689988776654433 4457788888888766554321  0         0000 11112  36899999999421 1


Q ss_pred             ccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          160 VRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       160 ~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ........+.+.|++.+++|+++++.|+| +.++.+.
T Consensus        95 ~~~l~~t~~~~~i~~~~~~G~v~~G~SAG-A~~~~~~  130 (210)
T cd03129          95 LSVLRETPLLDAILKRVARGVVIGGTSAG-AAVMGET  130 (210)
T ss_pred             HHHHHhCChHHHHHHHHHcCCeEEEcCHH-HHHhhhc
Confidence            11122334566677777799999999996 5567764

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from

>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A

Probab=84.59  E-value=1.8  Score=28.58  Aligned_cols=19  Identities=16%  Similarity=0.020  Sum_probs=15.1

Q ss_pred             CCCCHHHHHHHHHHHHhCC
Q 012037          296 NGSEEIEIVTIVDILRRAK  314 (472)
Q Consensus       296 ~g~~~~e~~~~~d~l~~a~  314 (472)
                      -|++..|++.|+++|..+|
T Consensus        20 TG~wl~E~~hpy~~f~~aG   38 (38)
T PF13587_consen   20 TGFWLSELAHPYYVFTDAG   38 (38)
T ss_dssp             --B-HHHHHHHHHHHHHTT
T ss_pred             ceeccHHHhhHHHHHHHCc
Confidence            4899999999999999886

>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase

Probab=82.62  E-value=2.1  Score=41.76  Aligned_cols=79  Identities=18%  Similarity=0.114  Sum_probs=44.4

Q ss_pred             HHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHH---hc
Q 012037          102 IIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQA---EE  178 (472)
Q Consensus       102 ~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~---~~  178 (472)
                      ..++.+.++|..|..+-.+..             ...+++. ...+|.|++|||.........-+....+++.+.   +.
T Consensus        24 ~Yv~~l~~aG~~vvpi~~~~~-------------~~~l~~~-l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~   89 (273)
T cd01747          24 SYVKFLESAGARVVPIWINES-------------EEYYDKL-FKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDA   89 (273)
T ss_pred             HHHHHHHHCCCeEEEEEeCCc-------------HHHHHHH-HhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhc
Confidence            467888888988766554311             0112221 126899999999423321111223334444443   44


Q ss_pred             C--CeEEEEchhhHHhhhc
Q 012037          179 K--RLYGAICAAPAVTLLP  195 (472)
Q Consensus       179 ~--k~I~aic~g~~~lLa~  195 (472)
                      |  .+|.++|-|-. +|+.
T Consensus        90 g~~~Pv~GiClG~Q-lL~~  107 (273)
T cd01747          90 GDYFPVWGTCLGFE-LLTY  107 (273)
T ss_pred             CCCCcEEEEcHHHH-HHHH
Confidence            4  79999999765 4554

Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=82.62  E-value=0.63  Score=41.19  Aligned_cols=82  Identities=17%  Similarity=0.096  Sum_probs=50.5

Q ss_pred             HHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc-cccccCChHHHHHHHHHHhcC
Q 012037          101 VIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG-SVRLRDCEILKKITSKQAEEK  179 (472)
Q Consensus       101 ~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~-~~~l~~~~~~~~~l~~~~~~~  179 (472)
                      ....+.|++.|++++.+..... ..  .     .   ..+.+  ...|+|++.||... ......+..+.+.|++.+++|
T Consensus         3 ~~~~~~f~~~g~~v~~l~~~~~-~~--~-----~---~~~~i--~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G   69 (154)
T PF03575_consen    3 EKFRKAFRKLGFEVDQLDLSDR-ND--A-----D---ILEAI--READAIFLGGGDTFRLLRQLKETGLDEAIREAYRKG   69 (154)
T ss_dssp             HHHHHHHHHCT-EEEECCCTSC-GH--H-----H---HHHHH--HHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCEEEEEeccCC-Ch--H-----H---HHHHH--HhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCC
Confidence            3567899999998777765532 10  0     1   11112  26899999999421 112234566888999999999


Q ss_pred             CeEEEEchhhHHhhhcC
Q 012037          180 RLYGAICAAPAVTLLPW  196 (472)
Q Consensus       180 k~I~aic~g~~~lLa~a  196 (472)
                      ++|++..+| +.++...
T Consensus        70 ~vi~G~SAG-A~i~~~~   85 (154)
T PF03575_consen   70 GVIIGTSAG-AMILGPS   85 (154)
T ss_dssp             SEEEEETHH-HHCTSSB
T ss_pred             CEEEEEChH-HhhccCc
Confidence            999999885 6555443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.

>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=82.26  E-value=7.1  Score=40.10  Aligned_cols=102  Identities=13%  Similarity=0.065  Sum_probs=57.4

Q ss_pred             CCCCEEEEEe-CCCCCHHHHHHHHHHHHhCC------CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcC
Q 012037          285 DRMPRVLIPI-ANGSEEIEIVTIVDILRRAK------VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPG  357 (472)
Q Consensus       285 ~~~~~V~il~-~~g~~~~e~~~~~d~l~~a~------~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpG  357 (472)
                      ...-+|+++- |-++.+. +..+...|..+.      .++.++....=.+.+. .--...-...+..+  ...|.|+|||
T Consensus       296 ~~~V~IalVGKYt~l~Ds-Y~Sv~KAL~Ha~~~~~~kl~i~wi~s~dLE~~t~-~e~~~~~~~aW~~l--~~adGilvPG  371 (585)
T KOG2387|consen  296 QVPVRIALVGKYTKLSDS-YLSVVKALEHAALAINRKLEIVWIDSSDLEPETE-QEDPRKYHAAWQKL--KSADGILVPG  371 (585)
T ss_pred             cCcEEEEEEeccccchHH-HHHHHHHHHHHHHHhcccceEEEEehhccccccc-ccChhHHHHHHHHh--ccCCeEEeCC
Confidence            3446777774 4455554 445555555543      5555554422101111 11111111233333  5689999999


Q ss_pred             CCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHH
Q 012037          358 GVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIV  394 (472)
Q Consensus       358 G~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~l  394 (472)
                      |.+ ..   --+.-+...+.+.+++.+..+||-|..+
T Consensus       372 GFG-~R---GveG~i~Aak~ARen~iP~LGiCLGmQ~  404 (585)
T KOG2387|consen  372 GFG-DR---GVEGKILAAKWARENKIPFLGICLGMQL  404 (585)
T ss_pred             ccc-cc---chhHHHHHHHHHHhcCCCeEeeehhhhH
Confidence            984 22   3345566677778899999999999865

>TIGR02069 cyanophycinase cyanophycinase

Probab=82.02  E-value=4  Score=39.28  Aligned_cols=100  Identities=19%  Similarity=0.172  Sum_probs=62.0

Q ss_pred             cEEEEEeCCCCcHHH-HHHHHHHHHhCCC-EEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc-ccc
Q 012037           85 KKVLVPVGFGTEEME-AVIIVDVLRRAGA-QVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG-SVR  161 (472)
Q Consensus        85 ~kV~ill~~g~~~~e-~~~~~~~l~~ag~-~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~-~~~  161 (472)
                      .||+|+-.-.-+..+ .....+.|++.|+ +++++..... . ..     -.+ ...+.+  ...|+|++.||... ...
T Consensus        29 ~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r-~-~a-----~~~-~~~~~l--~~ad~I~~~GGnq~~l~~   98 (250)
T TIGR02069        29 AIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVRER-E-DA-----SDE-NAIALL--SNATGIFFTGGDQLRITS   98 (250)
T ss_pred             ceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCCh-H-Hc-----cCH-HHHHHH--hhCCEEEEeCCCHHHHHH
Confidence            589988765544444 3456778899898 4666655421 1 00     000 001112  26899999999421 112


Q ss_pred             ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhc
Q 012037          162 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLP  195 (472)
Q Consensus       162 l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~  195 (472)
                      ......+.+.|++.+++|.+|++..+| +.++..
T Consensus        99 ~l~~t~l~~~l~~~~~~G~vi~G~SAG-A~i~~~  131 (250)
T TIGR02069        99 LLGDTPLLDRLRKRVHEGIILGGTSAG-AAVMSD  131 (250)
T ss_pred             HHcCCcHHHHHHHHHHcCCeEEEccHH-HHhccc
Confidence            335567888999999999999999996 545543

This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.

>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=80.76  E-value=11  Score=37.48  Aligned_cols=89  Identities=16%  Similarity=0.188  Sum_probs=57.8

Q ss_pred             CCcEEEEEeCCCCcH--HHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc
Q 012037           83 PPKKVLVPVGFGTEE--MEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV  160 (472)
Q Consensus        83 ~~~kV~ill~~g~~~--~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~  160 (472)
                      +++||+++..++-..  ..+..+.+.|++.|+++.+...... .    .+...     +.......+|.+++.||     
T Consensus         2 ~~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~-~----~~~~~-----~~~~~~~~~d~vi~~GG-----   66 (305)
T PRK02645          2 QLKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPK-D----NPYPV-----FLASASELIDLAIVLGG-----   66 (305)
T ss_pred             CcCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchh-h----ccccc-----hhhccccCcCEEEEECC-----
Confidence            478899998886433  3355667778889999777553321 1    01110     01111235899999999     


Q ss_pred             cccCChHHHHHHHHHHhcCCeEEEEchhhH
Q 012037          161 RLRDCEILKKITSKQAEEKRLYGAICAAPA  190 (472)
Q Consensus       161 ~l~~~~~~~~~l~~~~~~~k~I~aic~g~~  190 (472)
                          |..+++.++.....+.+|++|-.||.
T Consensus        67 ----DGT~l~~~~~~~~~~~pv~gin~~G~   92 (305)
T PRK02645         67 ----DGTVLAAARHLAPHDIPILSVNVGGH   92 (305)
T ss_pred             ----cHHHHHHHHHhccCCCCEEEEecCCc
Confidence                46677788877778999999987333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	472
3ot1_A	208	Crystal Structure Of Vc2308 Protein Length = 208		2e-28
3ot1_A	208	Crystal Structure Of Vc2308 Protein Length = 208		1e-15
3ot1_B	208	Crystal Structure Of Vc2308 Protein Length = 208		3e-27
3ot1_B	208	Crystal Structure Of Vc2308 Protein Length = 208		4e-14
3b36_A	192	Structure Of M26l Dj-1 Length = 192		3e-25
3b36_A	192	Structure Of M26l Dj-1 Length = 192		1e-19
4e08_A	190	Crystal Structure Of Drosophila Melanogaster Dj-1be		3e-25
4e08_A	190	Crystal Structure Of Drosophila Melanogaster Dj-1be		5e-24
1ucf_A	189	The Crystal Structure Of Dj-1, A Protein Related To		5e-25
1ucf_A	189	The Crystal Structure Of Dj-1, A Protein Related To		3e-19
3sf8_B	191	Structural Insights Into Thiol Stabilization Of Dj-		5e-25
3sf8_B	191	Structural Insights Into Thiol Stabilization Of Dj-		2e-19
1j42_A	189	Crystal Structure Of Human Dj-1 Length = 189		6e-25
1j42_A	189	Crystal Structure Of Human Dj-1 Length = 189		2e-19
2rk4_A	197	Structure Of M26i Dj-1 Length = 197		6e-25
2rk4_A	197	Structure Of M26i Dj-1 Length = 197		4e-19
1pe0_A	197	Crystal Structure Of The K130r Mutant Of Human Dj-1		6e-25
1pe0_A	197	Crystal Structure Of The K130r Mutant Of Human Dj-1		3e-19
2r1u_A	187	Dj-1 Activation By Catechol Quinone Modification Le		6e-25
2r1u_A	187	Dj-1 Activation By Catechol Quinone Modification Le		2e-19
3cza_A	197	Crystal Structure Of E18d Dj-1 Length = 197		1e-24
3cza_A	197	Crystal Structure Of E18d Dj-1 Length = 197		6e-19
3cy6_A	197	Crystal Structure Of E18q Dj-1 Length = 197		1e-24
3cy6_A	197	Crystal Structure Of E18q Dj-1 Length = 197		6e-19
3b3a_A	192	Structure Of E163kR145E DJ-1 Length = 192		2e-24
3b3a_A	192	Structure Of E163kR145E DJ-1 Length = 192		6e-19
2rk3_A	197	Structure Of A104t Dj-1 Length = 197		2e-24
2rk3_A	197	Structure Of A104t Dj-1 Length = 197		8e-19
3b38_A	192	Structure Of A104v Dj-1 Length = 192		2e-24
3b38_A	192	Structure Of A104v Dj-1 Length = 192		1e-18
3cz9_A	197	Crystal Structure Of E18l Dj-1 Length = 197		5e-24
3cz9_A	197	Crystal Structure Of E18l Dj-1 Length = 197		2e-18
2r1t_B	187	Dopamine Quinone Conjugation To Dj-1 Length = 187		5e-24
2r1t_B	187	Dopamine Quinone Conjugation To Dj-1 Length = 187		6e-18
2r1t_A	187	Dopamine Quinone Conjugation To Dj-1 Length = 187		7e-24
2r1t_A	187	Dopamine Quinone Conjugation To Dj-1 Length = 187		5e-18
1soa_A	189	Human Dj-1 With Sulfinic Acid Length = 189		7e-24
1soa_A	189	Human Dj-1 With Sulfinic Acid Length = 189		7e-18
3sf8_A	191	Structural Insights Into Thiol Stabilization Of Dj-		8e-24
3sf8_A	191	Structural Insights Into Thiol Stabilization Of Dj-		7e-18
3bwe_A	189	Crystal Structure Of Aggregated Form Of Dj1 Length		1e-23
3bwe_A	189	Crystal Structure Of Aggregated Form Of Dj1 Length		4e-18
1pdv_A	197	Crystal Structure Of Human Dj-1, P 31 2 1 Space Gro		1e-23
1pdv_A	197	Crystal Structure Of Human Dj-1, P 31 2 1 Space Gro		3e-18
3cyf_A	197	Crystal Structure Of E18n Dj-1 Length = 197		3e-23
3cyf_A	197	Crystal Structure Of E18n Dj-1 Length = 197		3e-17
2rk6_A	192	Structure Of E163k Dj-1 Length = 192		3e-23
2rk6_A	192	Structure Of E163k Dj-1 Length = 192		1e-17
3f71_A	196	Crystal Structure Of E18d Dj-1 With Oxidized C106 L		3e-23
3f71_A	196	Crystal Structure Of E18d Dj-1 With Oxidized C106 L		1e-17
3ezg_A	196	Crystal Structure Of E18q Dj-1 With Oxidized C106 L		3e-23
3ezg_A	196	Crystal Structure Of E18q Dj-1 With Oxidized C106 L		1e-17
2ab0_A	205	Crystal Structure Of E. Coli Protein Yajl (Thij) Le		1e-22
2ab0_A	205	Crystal Structure Of E. Coli Protein Yajl (Thij) Le		1e-20
3nor_A	231	Crystal Structure Of T102s Isocyanide Hydratase Fro		3e-07
3nov_A	231	Crystal Structure Of D17e Isocyanide Hydratase From		5e-07
4ge0_A	194	Schizosaccharomyces Pombe Dj-1 T114p Mutant Length		6e-07
3noo_A	231	Crystal Structure Of C101a Isocyanide Hydratase Fro		3e-06
4ge3_A	194	Schizosaccharomyces Pombe Dj-1 T114v Mutant Length		3e-06
4gdh_A	194	Schizosaccharomyces Pombe Dj-1 Length = 194		6e-06
1g2i_A	166	Crystal Structure Of A Novel Intracellular Protease		6e-06
3noq_A	231	Crystal Structure Of C101s Isocyanide Hydratase Fro		6e-06
3non_A	231	Crystal Structure Of Isocyanide Hydratase From Pseu		7e-06
3fse_A	365	Crystal Structure Of A Two-Domain Protein Containin		8e-04

>pdb|3OT1|A Chain A, Crystal Structure Of Vc2308 Protein Length = 208

Iteration: 1
 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 111/203 (54%), Gaps = 9/203 (4%)
Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K++LVPV  G+EE E VIIVD L RAG QVT A+V  +L+V+ S G  L A+ ++  CS 
Sbjct: 10  KRILVPVAHGSEEXETVIIVDTLVRAGFQVTXAAVGDKLQVQGSRGVWLTAEQTLEACSA 69
Query: 145 QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQI 204
           + FD +ALPGG+ G+    D   L  +    +++ +L  AICA PA+           + 
Sbjct: 70  EAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARX 129
Query: 205 TCHPAFTDKLPTFWAVKSNI--HVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGEL 262
           TCHP F D +P+    +  +  + +  + TS+GPGT+ EFAL  +  L G  +A+ +   
Sbjct: 130 TCHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTALEFALAXIALLAGVELAQHVAAP 189
Query: 263 LLMHNADNSLKKEEFNEVEWFFD 285
            ++H        ++  E+  F D
Sbjct: 190 XVLH-------PQQLTELSGFID 205

>pdb|3OT1|A Chain A, Crystal Structure Of Vc2308 Protein Length = 208

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAES 348
           R+L+P+A+GSEE E V IVD L RA   V  A+V    Q+  S+GV + A++++   +  
Sbjct: 11  RILVPVAHGSEEXETVIIVDTLVRAGFQVTXAAVGDKLQVQGSRGVWLTAEQTLEACSAE 70
Query: 349 VYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSP-IVXXXXXXXXXXXXX 407
            +D + LPGGV GA+    S  L  L+      G++  A+C++P +V             
Sbjct: 71  AFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARXT 130
Query: 408 XXPSVIGKLTNEVVNGTKVVVDG--KVITSRGLANVIDF 444
             P+    + +E ++  +V       ++TS+G    ++F
Sbjct: 131 CHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTALEF 169

>pdb|3OT1|B Chain B, Crystal Structure Of Vc2308 Protein Length = 208

Iteration: 1
 Score =  119 bits (299), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 110/203 (54%), Gaps = 9/203 (4%)
Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K++LVPV  G+EE E VIIVD L RAG QVT A+V  +L+V+ S G  L A+ ++  CS 
Sbjct: 10  KRILVPVAHGSEEXETVIIVDTLVRAGFQVTXAAVGDKLQVQGSRGVWLTAEQTLEACSA 69
Query: 145 QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQI 204
           + FD +ALPGG+ G+    D   L  +    +++ +L  AI A PA+           + 
Sbjct: 70  EAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAIXATPALVFAKQQKFVGARX 129
Query: 205 TCHPAFTDKLPTFWAVKSNI--HVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGEL 262
           TCHP F D +P+    +  +  + +  + TS+GPGT+ EFAL  +  L G  +A+ +   
Sbjct: 130 TCHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTALEFALAXIALLAGVELAQHVAAP 189
Query: 263 LLMHNADNSLKKEEFNEVEWFFD 285
            ++H        ++  E+  F D
Sbjct: 190 XVLH-------PQQLTELSGFID 205

>pdb|3OT1|B Chain B, Crystal Structure Of Vc2308 Protein Length = 208

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAES 348
           R+L+P+A+GSEE E V IVD L RA   V  A+V    Q+  S+GV + A++++   +  
Sbjct: 11  RILVPVAHGSEEXETVIIVDTLVRAGFQVTXAAVGDKLQVQGSRGVWLTAEQTLEACSAE 70
Query: 349 VYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSP-IVXXXXXXXXXXXXX 407
            +D + LPGGV GA+    S  L  L+      G++  A+ ++P +V             
Sbjct: 71  AFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAIXATPALVFAKQQKFVGARXT 130
Query: 408 XXPSVIGKLTNEVVNGTKVVVDG--KVITSRGLANVIDF 444
             P+    + +E ++  +V       ++TS+G    ++F
Sbjct: 131 CHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTALEF 169

>pdb|3B36|A Chain A, Structure Of M26l Dj-1 Length = 192

Iteration: 1
 Score =  112 bits (281), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/187 (37%), Positives = 105/187 (56%), Gaps = 5/187 (2%)
Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K+ LV +  G EEME VI VDVLRRAG +VT+A +  +  V+ S    +  D S+ +   
Sbjct: 7   KRALVILAKGAEEMETVIPVDVLRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 66
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
           +  +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P   LL   +    +
Sbjct: 67  EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSK 125
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
           +T HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++ 
Sbjct: 126 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 185
Query: 261 ELLLMHN 267
             L++ +
Sbjct: 186 APLVLKD 192

>pdb|3B36|A Chain A, Structure Of M26l Dj-1 Length = 192

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 92/184 (50%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 347
           R L+ +A G+EE+E V  VD+LRRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 8   RALVILAKGAEEMETVIPVDVLRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 67
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+C+ P               
Sbjct: 68  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 127
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 128 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 187
Query: 465 LVFE 468
           LV +
Sbjct: 188 LVLK 191

>pdb|4E08|A Chain A, Crystal Structure Of Drosophila Melanogaster Dj-1beta Length = 190

Iteration: 1
 Score =  112 bits (281), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/186 (36%), Positives = 106/186 (56%), Gaps = 4/186 (2%)
Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K  LV +  G EEME +I  DVLRRAG +VT+A +     V+ S   +++ DTS++  + 
Sbjct: 6   KSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVAS 65
Query: 145 QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQI 204
             FD++ LPGG+ GS  + +  ++  +   Q     L  AICAAP V L   G+   K +
Sbjct: 66  DKFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPTV-LAKHGVASGKSL 124
Query: 205 TCHPAFTDKLPTFWAVKSNIHV--SGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGE- 261
           T +P+   +L   ++   +  V   G + TSRGPGT++EFAL + E+L G+   +E+ + 
Sbjct: 125 TSYPSMKPQLVNNYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQEVAKG 184
Query: 262 LLLMHN 267
           LL+ +N
Sbjct: 185 LLVAYN 190

>pdb|4E08|A Chain A, Crystal Structure Of Drosophila Melanogaster Dj-1beta Length = 190

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 99/181 (54%), Gaps = 2/181 (1%)
Query: 291 LIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVY 350
           L+ +A G+EE+E +   D+LRRA + V VA +     +  S+ V+I+ D S++  A   +
Sbjct: 9   LVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKF 68
Query: 351 DLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXXXXP 410
           D+++LPGG+ G+  + +S ++  LL+ Q+  G +  A+C++P V               P
Sbjct: 69  DVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPTVLAKHGVASGKSLTSYP 128
Query: 411 SVIGKLTNE--VVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFE 468
           S+  +L N    V+   VV DG +ITSRG     +FAL I  +  G  + + VA+GL+  
Sbjct: 129 SMKPQLVNNYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQEVAKGLLVA 188
Query: 469 Y 469
           Y
Sbjct: 189 Y 189

>pdb|1UCF|A Chain A, The Crystal Structure Of Dj-1, A Protein Related To Male Fertility And Parkinson's Disease Length = 189

Iteration: 1
 Score =  112 bits (280), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 105/187 (56%), Gaps = 5/187 (2%)
Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K+ LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   
Sbjct: 4   KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
           +  +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P   LL   +    +
Sbjct: 64  EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
           +T HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++ 
Sbjct: 123 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHN 267
             L++ +
Sbjct: 183 APLVLKD 189

>pdb|1UCF|A Chain A, The Crystal Structure Of Dj-1, A Protein Related To Male Fertility And Parkinson's Disease Length = 189

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 347
           R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+C+ P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 465 LVFE 468
           LV +
Sbjct: 185 LVLK 188

>pdb|3SF8|B Chain B, Structural Insights Into Thiol Stabilization Of Dj-1 Length = 191

Iteration: 1
 Score =  112 bits (280), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 105/187 (56%), Gaps = 5/187 (2%)
Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K+ LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   
Sbjct: 4   KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
           +  +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P   LL   +    +
Sbjct: 64  EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
           +T HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++ 
Sbjct: 123 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHN 267
             L++ +
Sbjct: 183 APLVLKD 189

>pdb|3SF8|B Chain B, Structural Insights Into Thiol Stabilization Of Dj-1 Length = 191

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 347
           R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+C+ P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 465 LVFE 468
           LV +
Sbjct: 185 LVLK 188

>pdb|1J42|A Chain A, Crystal Structure Of Human Dj-1 Length = 189

Iteration: 1
 Score =  112 bits (279), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 105/187 (56%), Gaps = 5/187 (2%)
Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K+ LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   
Sbjct: 4   KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
           +  +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P   LL   +    +
Sbjct: 64  EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGCGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
           +T HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++ 
Sbjct: 123 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHN 267
             L++ +
Sbjct: 183 APLVLKD 189

>pdb|1J42|A Chain A, Crystal Structure Of Human Dj-1 Length = 189

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 347
           R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+C+ P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGCGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 465 LVFE 468
           LV +
Sbjct: 185 LVLK 188

>pdb|2RK4|A Chain A, Structure Of M26i Dj-1 Length = 197

Iteration: 1
 Score =  112 bits (279), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 105/187 (56%), Gaps = 5/187 (2%)
Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K+ LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   
Sbjct: 4   KRALVILAKGAEEMETVIPVDVIRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
           +  +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P   LL   +    +
Sbjct: 64  EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
           +T HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++ 
Sbjct: 123 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHN 267
             L++ +
Sbjct: 183 APLVLKD 189

>pdb|2RK4|A Chain A, Structure Of M26i Dj-1 Length = 197

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 347
           R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEMETVIPVDVIRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+C+ P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 465 LVFE 468
           LV +
Sbjct: 185 LVLK 188

>pdb|1PE0|A Chain A, Crystal Structure Of The K130r Mutant Of Human Dj-1 Length = 197

Iteration: 1
 Score =  112 bits (279), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 105/187 (56%), Gaps = 5/187 (2%)
Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K+ LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   
Sbjct: 4   KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
           +  +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P   LL   +    +
Sbjct: 64  EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
           +T HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++ 
Sbjct: 123 VTTHPLARDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHN 267
             L++ +
Sbjct: 183 APLVLKD 189

>pdb|1PE0|A Chain A, Crystal Structure Of The K130r Mutant Of Human Dj-1 Length = 197

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 347
           R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+C+ P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 125 THPLARDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 465 LVFE 468
           LV +
Sbjct: 185 LVLK 188

>pdb|2R1U|A Chain A, Dj-1 Activation By Catechol Quinone Modification Length = 187

Iteration: 1
 Score =  112 bits (279), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/185 (37%), Positives = 104/185 (56%), Gaps = 5/185 (2%)
Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K+ LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   
Sbjct: 3   KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 62
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
           +  +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P   LL   +    +
Sbjct: 63  EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSK 121
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
           +T HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++ 
Sbjct: 122 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 181
Query: 261 ELLLM 265
             L++
Sbjct: 182 APLVL 186

>pdb|2R1U|A Chain A, Dj-1 Activation By Catechol Quinone Modification Length = 187

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 347
           R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 4   RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 63
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+C+ P               
Sbjct: 64  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 123
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 124 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 183
Query: 465 LVFE 468
           LV +
Sbjct: 184 LVLK 187

>pdb|3CZA|A Chain A, Crystal Structure Of E18d Dj-1 Length = 197

Iteration: 1
 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/187 (36%), Positives = 105/187 (56%), Gaps = 5/187 (2%)
Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K+ LV +  G EEM+ VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   
Sbjct: 4   KRALVILAKGAEEMDTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
           +  +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P   LL   +    +
Sbjct: 64  EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
           +T HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++ 
Sbjct: 123 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHN 267
             L++ +
Sbjct: 183 APLVLKD 189

>pdb|3CZA|A Chain A, Crystal Structure Of E18d Dj-1 Length = 197

Iteration: 1
 Score = 92.0 bits (227), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 92/184 (50%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 347
           R L+ +A G+EE++ V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEMDTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+C+ P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 465 LVFE 468
           LV +
Sbjct: 185 LVLK 188

>pdb|3CY6|A Chain A, Crystal Structure Of E18q Dj-1 Length = 197

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/187 (36%), Positives = 105/187 (56%), Gaps = 5/187 (2%)
Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K+ LV +  G EEM+ VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   
Sbjct: 4   KRALVILAKGAEEMQTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
           +  +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P   LL   +    +
Sbjct: 64  EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
           +T HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++ 
Sbjct: 123 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHN 267
             L++ +
Sbjct: 183 APLVLKD 189

>pdb|3CY6|A Chain A, Crystal Structure Of E18q Dj-1 Length = 197

Iteration: 1
 Score = 92.0 bits (227), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 92/184 (50%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 347
           R L+ +A G+EE++ V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEMQTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+C+ P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 465 LVFE 468
           LV +
Sbjct: 185 LVLK 188

>pdb|3B3A|A Chain A, Structure Of E163kR145E DJ-1 Length = 192

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/187 (36%), Positives = 105/187 (56%), Gaps = 5/187 (2%)
Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K+ LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   
Sbjct: 7   KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 66
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
           +  +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P   LL   +    +
Sbjct: 67  EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSK 125
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
           +T HP   DK+     +   ++ +   G + TSRGPGTSF+FAL +VE L G+ VA ++ 
Sbjct: 126 VTTHPLAKDKMMNGGHYTYSENEVEKDGLILTSRGPGTSFKFALAIVEALNGKEVAAQVK 185
Query: 261 ELLLMHN 267
             L++ +
Sbjct: 186 APLVLKD 192

>pdb|3B3A|A Chain A, Structure Of E163kR145E DJ-1 Length = 192

Iteration: 1
 Score = 92.0 bits (227), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 91/184 (49%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 347
           R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 8   RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 67
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+C+ P               
Sbjct: 68  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 127
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
             P    K+ N      +  +V  DG ++TSRG      FALAIV    G      V   
Sbjct: 128 THPLAKDKMMNGGHYTYSENEVEKDGLILTSRGPGTSFKFALAIVEALNGKEVAAQVKAP 187
Query: 465 LVFE 468
           LV +
Sbjct: 188 LVLK 191

>pdb|2RK3|A Chain A, Structure Of A104t Dj-1 Length = 197

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/187 (36%), Positives = 104/187 (55%), Gaps = 5/187 (2%)
Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K+ LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   
Sbjct: 4   KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
           +  +D++ LPGG  G+  L +   +K+I  +Q   K L   ICA P   LL   +    +
Sbjct: 64  EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGP-TALLAHEIGFGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
           +T HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++ 
Sbjct: 123 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHN 267
             L++ +
Sbjct: 183 APLVLKD 189

>pdb|2RK3|A Chain A, Structure Of A104t Dj-1 Length = 197

Iteration: 1
 Score = 91.7 bits (226), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 347
           R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +   +C+ P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGPTALLAHEIGFGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 465 LVFE 468
           LV +
Sbjct: 185 LVLK 188

>pdb|3B38|A Chain A, Structure Of A104v Dj-1 Length = 192

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/187 (36%), Positives = 104/187 (55%), Gaps = 5/187 (2%)
Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K+ LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   
Sbjct: 7   KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 66
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
           +  +D++ LPGG  G+  L +   +K+I  +Q   K L   ICA P   LL   +    +
Sbjct: 67  EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAVICAGP-TALLAHEIGFGSK 125
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
           +T HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++ 
Sbjct: 126 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 185
Query: 261 ELLLMHN 267
             L++ +
Sbjct: 186 APLVLKD 192

>pdb|3B38|A Chain A, Structure Of A104v Dj-1 Length = 192

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 347
           R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 8   RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 67
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +   +C+ P               
Sbjct: 68  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAVICAGPTALLAHEIGFGSKVT 127
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 128 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 187
Query: 465 LVFE 468
           LV +
Sbjct: 188 LVLK 191

>pdb|3CZ9|A Chain A, Crystal Structure Of E18l Dj-1 Length = 197

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/187 (36%), Positives = 104/187 (55%), Gaps = 5/187 (2%)
Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K+ LV +  G EEM  VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   
Sbjct: 4   KRALVILAKGAEEMLTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
           +  +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P   LL   +    +
Sbjct: 64  EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
           +T HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++ 
Sbjct: 123 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHN 267
             L++ +
Sbjct: 183 APLVLKD 189

>pdb|3CZ9|A Chain A, Crystal Structure Of E18l Dj-1 Length = 197

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 347
           R L+ +A G+EE+  V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEMLTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+C+ P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 465 LVFE 468
           LV +
Sbjct: 185 LVLK 188

>pdb|2R1T|B Chain B, Dopamine Quinone Conjugation To Dj-1 Length = 187

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/179 (37%), Positives = 100/179 (55%), Gaps = 5/179 (2%)
Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K+ LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   
Sbjct: 3   KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVIXPDASLEDAKK 62
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
           +  +D++ LPGG  G+  L +   +K+I  +Q   K L  AI A P   LL   +    +
Sbjct: 63  EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGP-TALLAHEIGFGSK 121
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEI 259
           +T HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++
Sbjct: 122 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 180

>pdb|2R1T|B Chain B, Dopamine Quinone Conjugation To Dj-1 Length = 187

Iteration: 1
 Score = 89.0 bits (219), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 347
           R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 4   RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVIXPDASLEDAKKE 63
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+ + P               
Sbjct: 64  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGPTALLAHEIGFGSKVT 123
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 124 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 183
Query: 465 LVFE 468
           LV +
Sbjct: 184 LVLK 187

>pdb|2R1T|A Chain A, Dopamine Quinone Conjugation To Dj-1 Length = 187

Iteration: 1
 Score =  108 bits (270), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 68/185 (36%), Positives = 103/185 (55%), Gaps = 5/185 (2%)
Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K+ LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   
Sbjct: 3   KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 62
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
           +  +D++ LPGG  G+  L +   +K+I  +Q   K L  AI A P   LL   +    +
Sbjct: 63  EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGP-TALLAHEIGFGSK 121
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
           +T HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++ 
Sbjct: 122 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 181
Query: 261 ELLLM 265
             L++
Sbjct: 182 APLVL 186

>pdb|2R1T|A Chain A, Dopamine Quinone Conjugation To Dj-1 Length = 187

Iteration: 1
 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 347
           R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 4   RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 63
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+ + P               
Sbjct: 64  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGPTALLAHEIGFGSKVT 123
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 124 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 183
Query: 465 LVFE 468
           LV +
Sbjct: 184 LVLK 187

>pdb|1SOA|A Chain A, Human Dj-1 With Sulfinic Acid Length = 189

Iteration: 1
 Score =  108 bits (269), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 68/187 (36%), Positives = 104/187 (55%), Gaps = 5/187 (2%)
Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K+ LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   
Sbjct: 4   KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
           +  +D++ LPGG  G+  L +   +K+I  +Q   K L  AI A P   LL   +    +
Sbjct: 64  EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGP-TALLAHEIGFGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
           +T HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++ 
Sbjct: 123 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHN 267
             L++ +
Sbjct: 183 APLVLKD 189

>pdb|1SOA|A Chain A, Human Dj-1 With Sulfinic Acid Length = 189

Iteration: 1
 Score = 88.6 bits (218), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 347
           R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+ + P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLAHEIGFGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 465 LVFE 468
           LV +
Sbjct: 185 LVLK 188

>pdb|3SF8|A Chain A, Structural Insights Into Thiol Stabilization Of Dj-1 Length = 191

Iteration: 1
 Score =  108 bits (269), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 68/187 (36%), Positives = 104/187 (55%), Gaps = 5/187 (2%)
Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K+ LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   
Sbjct: 4   KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
           +  +D++ LPGG  G+  L +   +K+I  +Q   K L  AI A P   LL   +    +
Sbjct: 64  EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGP-TALLAHEIGFGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
           +T HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++ 
Sbjct: 123 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHN 267
             L++ +
Sbjct: 183 APLVLKD 189

>pdb|3SF8|A Chain A, Structural Insights Into Thiol Stabilization Of Dj-1 Length = 191

Iteration: 1
 Score = 88.6 bits (218), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 347
           R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+ + P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLAHEIGFGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 465 LVFE 468
           LV +
Sbjct: 185 LVLK 188

>pdb|3BWE|A Chain A, Crystal Structure Of Aggregated Form Of Dj1 Length = 189

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/187 (36%), Positives = 102/187 (54%), Gaps = 5/187 (2%)
Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K+ LV +  G EE E VI VDV RRAG +VT+A +  +  V+ S    +  D S+ +   
Sbjct: 4   KRALVILAKGAEEXETVIPVDVXRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
           +  +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P   LL   +    +
Sbjct: 64  EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
           +T HP   DK      +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++ 
Sbjct: 123 VTTHPLAKDKXXNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHN 267
             L++ +
Sbjct: 183 APLVLKD 189

>pdb|3BWE|A Chain A, Crystal Structure Of Aggregated Form Of Dj1 Length = 189

Iteration: 1
 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 89/184 (48%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 347
           R L+ +A G+EE E V  VD+ RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEXETVIPVDVXRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+C+ P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
             P    K  N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 125 THPLAKDKXXNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 465 LVFE 468
           LV +
Sbjct: 185 LVLK 188

>pdb|1PDV|A Chain A, Crystal Structure Of Human Dj-1, P 31 2 1 Space Group Length = 197

Iteration: 1
 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/187 (36%), Positives = 102/187 (54%), Gaps = 5/187 (2%)
Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K+ LV +  G EE E VI VDV RRAG +VT+A +  +  V+ S    +  D S+ +   
Sbjct: 4   KRALVILAKGAEEXETVIPVDVXRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
           +  +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P   LL   +    +
Sbjct: 64  EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
           +T HP   DK      +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++ 
Sbjct: 123 VTTHPLAKDKXXNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHN 267
             L++ +
Sbjct: 183 APLVLKD 189

>pdb|1PDV|A Chain A, Crystal Structure Of Human Dj-1, P 31 2 1 Space Group Length = 197

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 89/184 (48%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 347
           R L+ +A G+EE E V  VD+ RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEXETVIPVDVXRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+C+ P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
             P    K  N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 125 THPLAKDKXXNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 465 LVFE 468
           LV +
Sbjct: 185 LVLK 188

>pdb|3CYF|A Chain A, Crystal Structure Of E18n Dj-1 Length = 197

Iteration: 1
 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/187 (35%), Positives = 103/187 (55%), Gaps = 5/187 (2%)
Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K+ LV +  G EEM  VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   
Sbjct: 4   KRALVILAKGAEEMNTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
           +  +D++ LPGG  G+  L +   +K+I  +Q   K L  AI A P   LL   +    +
Sbjct: 64  EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGP-TALLAHEIGFGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
           +T HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++ 
Sbjct: 123 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHN 267
             L++ +
Sbjct: 183 APLVLKD 189

>pdb|3CYF|A Chain A, Crystal Structure Of E18n Dj-1 Length = 197

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 90/184 (48%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 347
           R L+ +A G+EE+  V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEMNTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+ + P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLAHEIGFGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 465 LVFE 468
           LV +
Sbjct: 185 LVLK 188

>pdb|2RK6|A Chain A, Structure Of E163k Dj-1 Length = 192

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/187 (35%), Positives = 104/187 (55%), Gaps = 5/187 (2%)
Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K+ LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   
Sbjct: 7   KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 66
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
           +  +D++ LPGG  G+  L +   +K+I  +Q   K L  AI A P   LL   +    +
Sbjct: 67  EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGP-TALLAHEIGFGSK 125
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
           +T HP   DK+     +   ++ +   G + TSRGPGTSF+FAL +VE L G+ VA ++ 
Sbjct: 126 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFKFALAIVEALNGKEVAAQVK 185
Query: 261 ELLLMHN 267
             L++ +
Sbjct: 186 APLVLKD 192

>pdb|2RK6|A Chain A, Structure Of E163k Dj-1 Length = 192

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 90/184 (48%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 347
           R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 8   RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 67
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+ + P               
Sbjct: 68  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLAHEIGFGSKVT 127
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
             P    K+ N      +  +V  DG ++TSRG      FALAIV    G      V   
Sbjct: 128 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFKFALAIVEALNGKEVAAQVKAP 187
Query: 465 LVFE 468
           LV +
Sbjct: 188 LVLK 191

>pdb|3F71|A Chain A, Crystal Structure Of E18d Dj-1 With Oxidized C106 Length = 196

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/190 (35%), Positives = 106/190 (55%), Gaps = 5/190 (2%)
Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K+ LV +  G EEM+ VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   
Sbjct: 4   KRALVILAKGAEEMDTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
           +  +D++ LPGG  G+  L +   +K+I  +Q   K L  AI A P   LL   +    +
Sbjct: 64  EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGP-TALLAHEIGFGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
           +T HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++ 
Sbjct: 123 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHNADN 270
             L++ + ++
Sbjct: 183 APLVLKDLEH 192

>pdb|3F71|A Chain A, Crystal Structure Of E18d Dj-1 With Oxidized C106 Length = 196

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 4/170 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 347
           R L+ +A G+EE++ V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEMDTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+ + P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLAHEIGFGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFG 454
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNG 174

>pdb|3EZG|A Chain A, Crystal Structure Of E18q Dj-1 With Oxidized C106 Length = 196

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/190 (35%), Positives = 106/190 (55%), Gaps = 5/190 (2%)
Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K+ LV +  G EEM+ VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   
Sbjct: 4   KRALVILAKGAEEMQTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
           +  +D++ LPGG  G+  L +   +K+I  +Q   K L  AI A P   LL   +    +
Sbjct: 64  EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGP-TALLAHEIGFGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
           +T HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++ 
Sbjct: 123 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHNADN 270
             L++ + ++
Sbjct: 183 APLVLKDLEH 192

>pdb|3EZG|A Chain A, Crystal Structure Of E18q Dj-1 With Oxidized C106 Length = 196

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 4/170 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 347
           R L+ +A G+EE++ V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEMQTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+ + P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLAHEIGFGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFG 454
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNG 174

>pdb|2AB0|A Chain A, Crystal Structure Of E. Coli Protein Yajl (Thij) Length = 205

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 96/182 (52%), Gaps = 4/182 (2%)
Query: 88  LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASV--EPQLEVEASSGTRLVADTSISNCSHQ 145
           LV +  G+EE EAV  +D+L R G +VT ASV  +  L +  S G +L+AD  +   +  
Sbjct: 6   LVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADG 65
Query: 146 VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQIT 205
            +D+I LPGG+ G+   RD  +L +   +     R+  AICAAPA  L+P  +     +T
Sbjct: 66  EYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMT 125
Query: 206 CHPAFTDKLPTFWAVKSNIHVSGEVT--TSRGPGTSFEFALCLVEQLFGESVAKEIGELL 263
             P   DK+P    +   +     V   TS+GPGT+ +F L +++ L G   A E+   L
Sbjct: 126 GFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQL 185
Query: 264 LM 265
           +M
Sbjct: 186 VM 187

>pdb|2AB0|A Chain A, Crystal Structure Of E. Coli Protein Yajl (Thij) Length = 205

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 98/182 (53%), Gaps = 5/182 (2%)
Query: 291 LIPIANGSEEIEIVTIVDILRRAKVDVVVASV--ERSTQIVASQGVKIIADKSISDAAES 348
           L+ +A GSEE E VT +D+L R  + V  ASV  + +  I  S+GVK++AD  + + A+ 
Sbjct: 6   LVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADG 65
Query: 349 VYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSP-IVXXXXXXXXXXXXX 407
            YD+I+LPGG+ GAE  + S +L + +K+   +GRI  A+C++P  V             
Sbjct: 66  EYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMT 125
Query: 408 XXPSVIGKLTNEVVNGTKVVVDGKV--ITSRGLANVIDFALAIVSKFFGHARTRSVAEGL 465
             P++  K+  E     +VV D +V  +TS+G    IDF L I+    G  +   VA  L
Sbjct: 126 GFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQL 185
Query: 466 VF 467
           V 
Sbjct: 186 VM 187

>pdb|3NOR|A Chain A, Crystal Structure Of T102s Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 7/149 (4%)
Query: 113 QVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKIT 172
           QV +   EP   V ASSG  L A TS ++C     D+I +PGG      + D + L  I 
Sbjct: 35  QVHLIWKEPG-PVVASSGLVLQATTSFADCP--PLDVICIPGGTGVGALMEDPQALAFI- 90
Query: 173 SKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHV--SGEV 230
            +QA   R   ++C+  ++ L   GLL+ K+ T H A+ + L    A+  +  V   G +
Sbjct: 91  RQQAARARYVTSVCSG-SLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNL 149
Query: 231 TTSRGPGTSFEFALCLVEQLFGESVAKEI 259
            T  G     +FAL L  +LF  + A+ +
Sbjct: 150 LTGGGITAGIDFALTLAAELFDAATAQRV 178

>pdb|3NOV|A Chain A, Crystal Structure Of D17e Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 7/149 (4%)
Query: 113 QVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKIT 172
           QV +   EP   V ASSG  L A TS ++C     D+I +PGG      + D + L  I 
Sbjct: 35  QVHLIWKEPG-PVVASSGLVLQATTSFADCP--PLDVICIPGGTGVGALMEDPQALAFI- 90
Query: 173 SKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHV--SGEV 230
            +QA   R   ++C   ++ L   GLL+ K+ T H A+ + L    A+  +  V   G +
Sbjct: 91  RQQAARARYVTSVCTG-SLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNL 149
Query: 231 TTSRGPGTSFEFALCLVEQLFGESVAKEI 259
            T  G     +FAL L  +LF  + A+ +
Sbjct: 150 LTGGGITAGIDFALTLAAELFDAATAQRV 178

>pdb|4GE0|A Chain A, Schizosaccharomyces Pombe Dj-1 T114p Mutant Length = 194

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 90/193 (46%), Gaps = 17/193 (8%)
Query: 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKV--DVVVASVERSTQIVASQGVKIIADKSI- 342
            M +V + +A+G++EIE      I +RA++  D V     +   +  S+ V++ A++S  
Sbjct: 3   HMVKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYK 62
Query: 343 ----SDAAESVYDLIILPGGVAGAERLQKSRILKKLLKE-QKVAGRIYGAVCSSPIVXXX 397
               +D     YD+ I+PGG  GA+ L  +  +++++KE  K   +  G + + P+    
Sbjct: 63  EIPSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXAGPLT-AK 121
Query: 398 XXXXXXXXXXXXPSVIGKLTNEVVNGTK-----VVVDGKVITSRGLANVIDFALAIVSKF 452
                       PSV G+L      G K     VV++  +ITS+G    + F L ++ + 
Sbjct: 122 TSGLPNKQITGHPSVRGQLEE---GGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQV 178
Query: 453 FGHARTRSVAEGL 465
               +  +V + L
Sbjct: 179 ASKDKYNAVYKSL 191

>pdb|3NOO|A Chain A, Crystal Structure Of C101a Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 7/149 (4%)
Query: 113 QVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKIT 172
           QV +   EP   V ASSG  L A TS ++C     D+I +PGG      + D + L  I 
Sbjct: 35  QVHLIWKEPG-PVVASSGLVLQATTSFADCP--PLDVICIPGGTGVGALMEDPQALAFIR 91
Query: 173 SKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHV--SGEV 230
            + A  +  Y    A  ++ L   GLL+ K+ T H A+ + L    A+  +  V   G +
Sbjct: 92  QQAARAR--YVTSVATGSLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNL 149
Query: 231 TTSRGPGTSFEFALCLVEQLFGESVAKEI 259
            T  G     +FAL L  +LF  + A+ +
Sbjct: 150 LTGGGITAGIDFALTLAAELFDAATAQRV 178

>pdb|4GE3|A Chain A, Schizosaccharomyces Pombe Dj-1 T114v Mutant Length = 194

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 88/192 (45%), Gaps = 15/192 (7%)
Query: 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKV--DVVVASVERSTQIVASQGVKIIADKSI- 342
            M +V + +A+G++EIE      I +RA++  D V     +   +  S+ V++ A++S  
Sbjct: 3   HMVKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYK 62
Query: 343 ----SDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXX 398
               +D     YD+ I+PGG  GA+ L  +  +++++KE       +  +  + ++    
Sbjct: 63  EIPSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXAGVLTAKT 122
Query: 399 XXXXXXXXXXXPSVIGKLTNEVVNGTK-----VVVDGKVITSRGLANVIDFALAIVSKFF 453
                      PSV G+L      G K     VV++  +ITS+G    + F L ++ +  
Sbjct: 123 SGLPNKQITGHPSVRGQLEE---GGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVA 179
Query: 454 GHARTRSVAEGL 465
              +  +V + L
Sbjct: 180 SKDKYNAVYKSL 191

>pdb|4GDH|A Chain A, Schizosaccharomyces Pombe Dj-1 Length = 194

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 87/192 (45%), Gaps = 15/192 (7%)
Query: 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKV--DVVVASVERSTQIVASQGVKIIADKSI- 342
            M +V + +A+G++EIE      I +RA++  D V     +   +  S+ V++ A++S  
Sbjct: 3   HMVKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYK 62
Query: 343 ----SDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXX 398
               +D     YD+ I+PGG  GA+ L  +  +++++KE       +  +  +  +    
Sbjct: 63  EIPSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXAGTLTAKT 122
Query: 399 XXXXXXXXXXXPSVIGKLTNEVVNGTK-----VVVDGKVITSRGLANVIDFALAIVSKFF 453
                      PSV G+L      G K     VV++  +ITS+G    + F L ++ +  
Sbjct: 123 SGLPNKQITGHPSVRGQLEE---GGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVA 179
Query: 454 GHARTRSVAEGL 465
              +  +V + L
Sbjct: 180 SKDKYNAVYKSL 191

>pdb|1G2I|A Chain A, Crystal Structure Of A Novel Intracellular Protease From Pyrococcus Horikoshii At 2 A Resolution Length = 166

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 9/169 (5%)
Query: 86  KVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ 145
           KVL       E++E +     L+  G +V +AS E +  +    G  +  D +    + +
Sbjct: 2   KVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFE-RGTITGKHGYSVKVDLTFDKVNPE 60
Query: 146 VFDLIALPGG-MPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQI 204
            FD + LPGG  P  VRL +  +   I  K   E +   +IC  P + L+  G+LR ++ 
Sbjct: 61  EFDALVLPGGRAPERVRLNEKAV--SIARKXFSEGKPVASICHGPQI-LISAGVLRGRKG 117
Query: 205 TCHPAFTDKLPTF---WAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQL 250
           T +P   D        W V + + V G   +SR P   + +    V+ L
Sbjct: 118 TSYPGIKDDXINAGVEW-VDAEVVVDGNWVSSRVPADLYAWXREFVKLL 165

>pdb|3NOQ|A Chain A, Crystal Structure Of C101s Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 7/149 (4%)
Query: 113 QVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKIT 172
           QV +   EP   V ASSG  L A TS ++C     D+I +PGG      + D + L  I 
Sbjct: 35  QVHLIWKEPG-PVVASSGLVLQATTSFADCP--PLDVICIPGGTGVGALMEDPQALAFI- 90
Query: 173 SKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHV--SGEV 230
            +QA   R   ++    ++ L   GLL+ K+ T H A+ + L    A+  +  V   G +
Sbjct: 91  RQQAARARYVTSVSTG-SLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNL 149
Query: 231 TTSRGPGTSFEFALCLVEQLFGESVAKEI 259
            T  G     +FAL L  +LF  + A+ +
Sbjct: 150 LTGGGITAGIDFALTLAAELFDAATAQRV 178

>pdb|3NON|A Chain A, Crystal Structure Of Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 7/149 (4%)
Query: 113 QVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKIT 172
           QV +   EP   V ASSG  L A TS ++C     D+I +PGG      + D + L  I 
Sbjct: 35  QVHLIWKEPG-PVVASSGLVLQATTSFADCP--PLDVICIPGGTGVGALMEDPQALAFI- 90
Query: 173 SKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHV--SGEV 230
            +QA   R   ++    ++ L   GLL+ K+ T H A+ + L    A+  +  V   G +
Sbjct: 91  RQQAARARYVTSVXTG-SLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNL 149
Query: 231 TTSRGPGTSFEFALCLVEQLFGESVAKEI 259
            T  G     +FAL L  +LF  + A+ +
Sbjct: 150 LTGGGITAGIDFALTLAAELFDAATAQRV 178

>pdb|3FSE|A Chain A, Crystal Structure Of A Two-Domain Protein Containing Dj-1THIJPFPI- Like And Ferritin-Like Domains (Ava_4496) From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution Length = 365

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 4/167 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQG-VKIIADKSISDAAE 347
           +V I I    E+ E +   + L++A  +VVV     + +    +G +   AD + ++A  
Sbjct: 12  KVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRXNEKYKGKRGRLSTQADGTTTEAIA 71
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
           S +D +++PGG A  ++ +++    + ++E    G++  AV   P V             
Sbjct: 72  SEFDAVVIPGGXA-PDKXRRNPNTVRFVQEAXEQGKLVAAVXHGPQVLIEGDLLRGKQAT 130
Query: 408 XXPSVIGKLTNEVVN--GTKVVVDGKVITSRGLANVIDFALAIVSKF 452
              ++     N   +     +VVDG +ITSR   ++  F  AI+S+ 
Sbjct: 131 GFIAISKDXXNAGADYLDEALVVDGNLITSREPGDLAIFTTAILSRL 177

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	472
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	1e-75
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	5e-71
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	4e-75
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	2e-70
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	2e-74
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	5e-70
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	3e-72
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	8e-70
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	7e-69
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	5e-23
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	7e-66
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	2e-61
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	3e-62
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	1e-51
2fex_A	188	Conserved hypothetical protein; structural genomic	1e-57
2fex_A	188	Conserved hypothetical protein; structural genomic	2e-44
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	1e-54
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	6e-50
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	2e-51
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	2e-38
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	5e-49
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	5e-38
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	2e-46
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	8e-41
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	7e-40
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	3e-33
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	5e-39
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	2e-32
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	1e-34
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	6e-28
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	1e-23
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	3e-12
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	3e-23
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	2e-18
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	3e-23
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	3e-14
3gra_A	202	Transcriptional regulator, ARAC family; transcript	3e-18
3er6_A	209	Putative transcriptional regulator protein; struct	3e-16
3er6_A	209	Putative transcriptional regulator protein; struct	8e-05
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	1e-09
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	1e-08
1u9c_A	224	APC35852; structural genomics, protein structure i	2e-09
1u9c_A	224	APC35852; structural genomics, protein structure i	4e-08
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	1e-08
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	6e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	6e-07
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	2e-06
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	5e-06
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	1e-04
1sy7_A	715	Catalase 1; heme oxidation, singlet oxygen, oxidor	6e-06
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	1e-04
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	3e-04

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster} Length = 190

 Score =  234 bits (600), Expect = 1e-75
 Identities = 65/183 (35%), Positives = 108/183 (59%), Gaps = 2/183 (1%)

Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAES 348
             L+ +A G+EE+E +   D+LRRA + V VA +     +  S+ V+I+ D S++  A  
Sbjct: 7   SALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASD 66

Query: 349 VYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATA 408
            +D+++LPGG+ G+  + +S ++  LL+ Q+  G +  A+C++P VL KHG+   K  T+
Sbjct: 67  KFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPTVLAKHGVASGKSLTS 126

Query: 409 HPSVIGKLTN--EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLV 466
           +PS+  +L N    V+   VV DG +ITSRG     +FAL I  +  G  + + VA+GL+
Sbjct: 127 YPSMKPQLVNNYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQEVAKGLL 186

Query: 467 FEY 469
             Y
Sbjct: 187 VAY 189

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster} Length = 190

 Score =  222 bits (568), Expect = 5e-71
 Identities = 66/186 (35%), Positives = 105/186 (56%), Gaps = 4/186 (2%)

Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K  LV +  G EEME +I  DVLRRAG +VT+A +     V+ S   +++ DTS++  + 
Sbjct: 6   KSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVAS 65

Query: 145 QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQI 204
             FD++ LPGG+ GS  + +  ++  +   Q     L  AICAAP V L   G+   K +
Sbjct: 66  DKFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPTV-LAKHGVASGKSL 124

Query: 205 TCHPAFTDKLPTFWA--VKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGE- 261
           T +P+   +L   ++      +   G + TSRGPGT++EFAL + E+L G+   +E+ + 
Sbjct: 125 TSYPSMKPQLVNNYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQEVAKG 184

Query: 262 LLLMHN 267
           LL+ +N
Sbjct: 185 LLVAYN 190

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} Length = 208

 Score =  233 bits (597), Expect = 4e-75
 Identities = 71/184 (38%), Positives = 109/184 (59%), Gaps = 2/184 (1%)

Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           K++LVPV  G+EEME VIIVD L RAG QVTMA+V  +L+V+ S G  L A+ ++  CS 
Sbjct: 10  KRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSA 69

Query: 145 QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQI 204
           + FD +ALPGG+ G+    D   L  +    +++ +L  AICA PA+           ++
Sbjct: 70  EAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARM 129

Query: 205 TCHPAFTDKLPTFWAVKSN--IHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGEL 262
           TCHP F D +P+    +     + +  + TS+GPGT+ EFAL ++  L G  +A+ +   
Sbjct: 130 TCHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTALEFALAMIALLAGVELAQHVAAP 189

Query: 263 LLMH 266
           +++H
Sbjct: 190 MVLH 193

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} Length = 208

 Score =  221 bits (565), Expect = 2e-70
 Identities = 56/182 (30%), Positives = 98/182 (53%), Gaps = 3/182 (1%)

Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAES 348
           R+L+P+A+GSEE+E V IVD L RA   V +A+V    Q+  S+GV + A++++   +  
Sbjct: 11  RILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAE 70

Query: 349 VYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSP-IVLHKHGLLKAKKAT 407
            +D + LPGGV GA+    S  L  L+      G++  A+C++P +V  K       + T
Sbjct: 71  AFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARMT 130

Query: 408 AHPSVIGKLTNEVVNGTK--VVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGL 465
            HP+    + +E ++  +        ++TS+G    ++FALA+++   G    + VA  +
Sbjct: 131 CHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTALEFALAMIALLAGVELAQHVAAPM 190

Query: 466 VF 467
           V 
Sbjct: 191 VL 192

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ... Length = 197

 Score =  231 bits (591), Expect = 2e-74
 Identities = 66/187 (35%), Positives = 97/187 (51%), Gaps = 4/187 (2%)

Query: 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA- 345
             R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA 
Sbjct: 3   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62

Query: 346 AESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKK 405
            E  YD+++LPGG  GA+ L +S  +K++LKEQ+    +   +C+ P  L  H +    K
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGPTALLAHEIGFGSK 122

Query: 406 ATAHPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVA 462
            T HP    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V 
Sbjct: 123 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182

Query: 463 EGLVFEY 469
             LV + 
Sbjct: 183 APLVLKD 189

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ... Length = 197

 Score =  220 bits (562), Expect = 5e-70
 Identities = 68/193 (35%), Positives = 105/193 (54%), Gaps = 5/193 (2%)

Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNC-S 143
           K+ LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   
Sbjct: 4   KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63

Query: 144 HQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
              +D++ LPGG  G+  L +   +K+I  +Q   K L   ICA P   LL   +    +
Sbjct: 64  EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGPTA-LLAHEIGFGSK 122

Query: 204 ITCHPAFTDKLP---TFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
           +T HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++ 
Sbjct: 123 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182

Query: 261 ELLLMHNADNSLK 273
             L++ + ++   
Sbjct: 183 APLVLKDLEHHHH 195

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2 Length = 205

 Score =  226 bits (578), Expect = 3e-72
 Identities = 65/205 (31%), Positives = 98/205 (47%), Gaps = 11/205 (5%)

Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEP--QLEVEASSGTRLVADTSISNC 142
              LV +  G+EE EAV  +D+L R G +VT ASV     L +  S G +L+AD  +   
Sbjct: 3   ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEV 62

Query: 143 SHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRK 202
           +   +D+I LPGG+ G+   RD  +L +   +     R+  AICAAPA  L+P  +    
Sbjct: 63  ADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIG 122

Query: 203 QITCHPAFTDKLPTFWAVKSNIHVSGEVT--TSRGPGTSFEFALCLVEQLFGESVAKEIG 260
            +T  P   DK+P    +   +     V   TS+GPGT+ +F L +++ L G   A E+ 
Sbjct: 123 NMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVA 182

Query: 261 ELLLMHNADNSLKKEEFNEVEWFFD 285
             L+M           +N  E    
Sbjct: 183 SQLVMAAG-------IYNYYEQLEH 200

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2 Length = 205

 Score =  220 bits (562), Expect = 8e-70
 Identities = 67/185 (36%), Positives = 101/185 (54%), Gaps = 5/185 (2%)

Query: 288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVE--RSTQIVASQGVKIIADKSISDA 345
              L+ +A GSEE E VT +D+L R  + V  ASV    +  I  S+GVK++AD  + + 
Sbjct: 3   ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEV 62

Query: 346 AESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSP-IVLHKHGLLKAK 404
           A+  YD+I+LPGG+ GAE  + S +L + +K+   +GRI  A+C++P  VL  H +    
Sbjct: 63  ADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIG 122

Query: 405 KATAHPSVIGKLTNEVVNGTKVVVDGKV--ITSRGLANVIDFALAIVSKFFGHARTRSVA 462
             T  P++  K+  E     +VV D +V  +TS+G    IDF L I+    G  +   VA
Sbjct: 123 NMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVA 182

Query: 463 EGLVF 467
             LV 
Sbjct: 183 SQLVM 187

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} Length = 396

 Score =  224 bits (572), Expect = 7e-69
 Identities = 61/412 (14%), Positives = 123/412 (29%), Gaps = 78/412 (18%)

Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQ---------------LEVEASS 129
           + VL+  G   E+ E ++    L+  G  V       +                    S 
Sbjct: 13  RTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESR 72

Query: 130 GTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAP 189
           G     + +        +D + +PGG      L     + ++  + +   +   +IC   
Sbjct: 73  GHNFTLNATFDEVDLSKYDGLVIPGGR-APEYLALTASVVELVKEFSRSGKPIASICHGQ 131

Query: 190 AVTLLPWGLLRRKQITCHPAFTDKLPT---FW---AVKSNIHVSGEVTTSRGPGTSFEFA 243
            + L     +  ++ T +      L      W          V G + T+       EF 
Sbjct: 132 LI-LAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLITAATYEGHPEFI 190

Query: 244 LCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEI 303
                        +   + L                         R+L    +  E+ E+
Sbjct: 191 -------------QLFVKALGGKITGA----------------NKRILFLCGDYMEDYEV 221

Query: 304 VTIVDILRRAKVDVVVASVERSTQIVAS---------------QGVKIIADKSISDAAES 348
                 L+     V     E+                       G       +  D   S
Sbjct: 222 KVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSS 281

Query: 349 VYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATA 408
            YD +++PGG A  E L  +  +  ++KE   + +   ++C    +L   G+LK +K TA
Sbjct: 282 SYDALVIPGGRA-PEYLALNEHVLNIVKEFMNSEKPVASICHGQQILAAAGVLKGRKCTA 340

Query: 409 HPSVIGKLTN--------EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKF 452
           +P+V   +          + ++  +   DG ++T        +F   +++  
Sbjct: 341 YPAVKLNVVLGGGTWLEPDPID--RCFTDGNLVTGAAWPGHPEFVSQLMALL 390

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} Length = 396

 Score = 99.4 bits (248), Expect = 5e-23
 Identities = 35/201 (17%), Positives = 62/201 (30%), Gaps = 24/201 (11%)

Query: 77  ATNSAVPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASS------- 129
                   K++L   G   E+ E  +    L+  G QV     E +      +       
Sbjct: 198 GGKITGANKRILFLCGDYMEDYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEG 257

Query: 130 --------GTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRL 181
                   G      T+  +     +D + +PGG      L   E +  I  +    ++ 
Sbjct: 258 DQTYSEKPGHTFALTTNFDDLVSSSYDALVIPGGR-APEYLALNEHVLNIVKEFMNSEKP 316

Query: 182 YGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWA------VKSNIHVSGEVTTSRG 235
             +IC    + L   G+L+ ++ T +PA    +                   G + T   
Sbjct: 317 VASICHGQQI-LAAAGVLKGRKCTAYPAVKLNVVLGGGTWLEPDPIDRCFTDGNLVTGAA 375

Query: 236 PGTSFEFALCLVEQLFGESVA 256
                EF   L+  L G  V+
Sbjct: 376 WPGHPEFVSQLMALL-GIQVS 395

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A Length = 194

 Score =  209 bits (534), Expect = 7e-66
 Identities = 49/191 (25%), Positives = 92/191 (48%), Gaps = 11/191 (5%)

Query: 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASV--ERSTQIVASQGVKIIADKSIS- 343
           M +V + +A+G++EIE      I +RA++ +    V   +   +  S+ V++ A++S   
Sbjct: 4   MVKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKE 63

Query: 344 ----DAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQ-KVAGRIYGAVCSSPIVLHKH 398
               D     YD+ I+PGG  GA+ L  +  +++++KE  K   +  G +C+  +     
Sbjct: 64  IPSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGTLTAK-T 122

Query: 399 GLLKAKKATAHPSVIGKLTNE--VVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHA 456
             L  K+ T HPSV G+L           VV++  +ITS+G    + F L ++ +     
Sbjct: 123 SGLPNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKD 182

Query: 457 RTRSVAEGLVF 467
           +  +V + L  
Sbjct: 183 KYNAVYKSLSM 193

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A Length = 194

 Score =  197 bits (504), Expect = 2e-61
 Identities = 45/191 (23%), Positives = 80/191 (41%), Gaps = 12/191 (6%)

Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEP--QLEVEASSGTRLVADTSISN- 141
            KV + V  GT+E+E      + +RA   +    V       V+ S    + A+ S    
Sbjct: 5   VKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEI 64

Query: 142 ----CSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEE-KRLYGAICAAPAVTLLPW 196
                  + +D+  +PGG  G+  L     ++++  +  ++  +  G ICA         
Sbjct: 65  PSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGT--LTAKT 122

Query: 197 GLLRRKQITCHPAFTDKLPTFWA--VKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGES 254
             L  KQIT HP+   +L       +   + +   + TS+GPGT+  F L L+EQ+  + 
Sbjct: 123 SGLPNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKD 182

Query: 255 VAKEIGELLLM 265
               + + L M
Sbjct: 183 KYNAVYKSLSM 193

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4} Length = 236

 Score =  201 bits (513), Expect = 3e-62
 Identities = 38/199 (19%), Positives = 83/199 (41%), Gaps = 5/199 (2%)

Query: 270 NSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIV 329
           +       +    +F  M +V I + +   +++   + D+L R      V  +    +  
Sbjct: 3   SDKIHHHHHHENLYFQGMYKVGIVLFDDFTDVDFFLMNDLLGRTSDSWTVRILGTKPEHH 62

Query: 330 ASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVC 389
           +  G+ +  D  +S+  E   D++++  G  G     +       LK    + ++ G++C
Sbjct: 63  SQLGMTVKTDGHVSEVKE--QDVVLITSGYRGIPAALQDENFMSALKLDP-SRQLIGSIC 119

Query: 390 SSPIVLHKHGLLKAKKATAHPSVIGKLTNE--VVNGTKVVVDGKVITSRGLANVIDFALA 447
           +   VLH+ GLLK KK T +P     L      V    +V++G + T+ G  +++     
Sbjct: 120 AGSFVLHELGLLKGKKLTTNPDAKAVLQGMGGDVQDLPLVIEGNIATAGGCLSLLYLVGW 179

Query: 448 IVSKFFGHARTRSVAEGLV 466
           +  + F   + + +   L+
Sbjct: 180 LAERLFDSVKRKQIQNQLI 198

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4} Length = 236

 Score =  173 bits (441), Expect = 1e-51
 Identities = 39/190 (20%), Positives = 71/190 (37%), Gaps = 6/190 (3%)

Query: 77  ATNSAVPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVAD 136
                    KV + +     +++  ++ D+L R     T+  +  + E  +  G  +  D
Sbjct: 13  ENLYFQGMYKVGIVLFDDFTDVDFFLMNDLLGRTSDSWTVRILGTKPEHHSQLGMTVKTD 72

Query: 137 TSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196
             +S       D++ +  G  G       E       K    ++L G+ICA   V L   
Sbjct: 73  GHVSEVKE--QDVVLITSGYRGIPAALQDENFMSAL-KLDPSRQLIGSICAGSFV-LHEL 128

Query: 197 GLLRRKQITCHPAFTDKLPTFWA--VKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGES 254
           GLL+ K++T +P     L           + + G + T+ G  +       L E+LF   
Sbjct: 129 GLLKGKKLTTNPDAKAVLQGMGGDVQDLPLVIEGNIATAGGCLSLLYLVGWLAERLFDSV 188

Query: 255 VAKEIGELLL 264
             K+I   L+
Sbjct: 189 KRKQIQNQLI 198

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2 Length = 188

 Score =  187 bits (478), Expect = 1e-57
 Identities = 37/188 (19%), Positives = 70/188 (37%), Gaps = 11/188 (5%)

Query: 287 MPRVLIPIANGSEEIEIVTIVDILRR-AKVDVVVASVERSTQIVASQGVKIIADKSISDA 345
           M R+ I +A    + E   +    R    V++V A+ +    + +  G+K+  D S    
Sbjct: 1   MTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMP-VTSMGGLKVTPDTSYDAL 59

Query: 346 AESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKK 405
                D +++PGG++  +       L  L+K  +   R+   +C++   L   G+L    
Sbjct: 60  DPVDIDALVIPGGLSWEKGTAAD--LGGLVKRFRDRDRLVAGICAAASALGGTGVLNDVA 117

Query: 406 ATAHPSVIGKLTNEVVNG------TKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTR 459
            T +     K               + V DG V+T+ G A  + FA+ I+          
Sbjct: 118 HTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGSA-PVSFAVEILKSLGLFGPEA 176

Query: 460 SVAEGLVF 467
                +  
Sbjct: 177 EAELQIFA 184

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2 Length = 188

 Score =  153 bits (389), Expect = 2e-44
 Identities = 36/191 (18%), Positives = 68/191 (35%), Gaps = 14/191 (7%)

Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRR-AGAQVTMASVEPQLEVEASSGTRLVADTSISNCS 143
            ++ + +     + E  ++    R   G ++  A+ +    V +  G ++  DTS     
Sbjct: 2   TRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM-PVTSMGGLKVTPDTSYDALD 60

Query: 144 HQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
               D + +PGG+           L  +  +  +  RL   ICAA +  L   G+L    
Sbjct: 61  PVDIDALVIPGGLSWEKGTA--ADLGGLVKRFRDRDRLVAGICAAASA-LGGTGVLNDVA 117

Query: 204 ITCHPAFTDKLPT------FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQL--FGESV 255
            T +   + K          +  +      G V T+ G      FA+ +++ L  FG   
Sbjct: 118 HTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGS-APVSFAVEILKSLGLFGPEA 176

Query: 256 AKEIGELLLMH 266
             E+      H
Sbjct: 177 EAELQIFAAEH 187

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482} Length = 175

 Score =  179 bits (456), Expect = 1e-54
 Identities = 28/170 (16%), Positives = 63/170 (37%), Gaps = 7/170 (4%)

Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISD--AA 346
           +V +   N      +   ++      +   V +V  + +I  + G+ +I D  I++    
Sbjct: 4   KVAVLAVNPVNGCGLFQYLEAFFENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGH 63

Query: 347 ESVYDLIILPGGVA-----GAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLL 401
           E  +D ++   G A            +  L +++K     G++    C+  ++    G+ 
Sbjct: 64  EDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFTGIT 123

Query: 402 KAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDFALAIVSK 451
           K KK   HP     + N +    K  +DG   T++    +      ++  
Sbjct: 124 KGKKVAVHPLAKPAIQNGIATDEKSEIDGNFFTAQDENTIWTMLPKVIEA 173

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482} Length = 175

 Score =  167 bits (425), Expect = 6e-50
 Identities = 30/173 (17%), Positives = 57/173 (32%), Gaps = 8/173 (4%)

Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           KKV V              ++     G    + +V    E++ +SG  L+ D  I+N   
Sbjct: 3   KKVAVLAVNPVNGCGLFQYLEAFFENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKG 62

Query: 145 QV--FDLIALPGG-----MPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG 197
               FD +    G                 L ++     E+ ++    CA   +     G
Sbjct: 63  HEDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMM-FDFTG 121

Query: 198 LLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQL 250
           + + K++  HP     +    A      + G   T++   T +     ++E L
Sbjct: 122 ITKGKKVAVHPLAKPAIQNGIATDEKSEIDGNFFTAQDENTIWTMLPKVIEAL 174

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis} Length = 212

 Score =  172 bits (438), Expect = 2e-51
 Identities = 36/180 (20%), Positives = 72/180 (40%), Gaps = 18/180 (10%)

Query: 287 MPRVLIPIANGSEEIEIVTIVDILRR--------AKVDVVVASVERSTQIVASQGVKIIA 338
             +  + + N   + E   ++  L          A + V+     +   I    G++I  
Sbjct: 5   TKKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEM-ITTMGGLRIKP 63

Query: 339 DKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398
           D S+ +      DL+ILPGG   +E + +   + + + +    G I  A+C +   L   
Sbjct: 64  DISLDECTLESKDLLILPGGTTWSEEIHQP--ILERIGQALKIGTIVAAICGATDALANM 121

Query: 399 GLLKAKKATAHPSVIGKLTNE------VVNGTKVVVDGKVITSRGLANVIDFALAIVSKF 452
           G L  +K T++     K+                V D  ++T+ G+A  ++FA+ ++ K 
Sbjct: 122 GYLDTRKHTSNNLEYTKMVCPNYKGEKFYELGPAVSDANLVTASGIA-PLEFAMEVLKKI 180

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis} Length = 212

 Score =  138 bits (349), Expect = 2e-38
 Identities = 36/216 (16%), Positives = 74/216 (34%), Gaps = 23/216 (10%)

Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRR--------AGAQVTMASVEPQLEVEASSGTRLVAD 136
           KK  + V     + E   ++  L          A  +V       +  +    G R+  D
Sbjct: 6   KKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKE-MITTMGGLRIKPD 64

Query: 137 TSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196
            S+  C+ +  DL+ LPGG   S  +   + + +   +  +   +  AIC A    L   
Sbjct: 65  ISLDECTLESKDLLILPGGTTWSEEIH--QPILERIGQALKIGTIVAAICGATDA-LANM 121

Query: 197 GLLRRKQITCHPAFTDKL------PTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQL 250
           G L  ++ T +     K+         +           + T+ G     EFA+ +++++
Sbjct: 122 GYLDTRKHTSNNLEYTKMVCPNYKGEKFYELGPAVSDANLVTASGIA-PLEFAMEVLKKI 180

Query: 251 FGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDR 286
              ++        L          E F ++    ++
Sbjct: 181 DVFTLDALHSWYNLNKTHKP----EYFFQLMNSINK 212

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis} Length = 206

 Score =  166 bits (421), Expect = 5e-49
 Identities = 35/187 (18%), Positives = 71/187 (37%), Gaps = 14/187 (7%)

Query: 287 MPRVLIPIANGSEEIEIVTIVDIL-RRAKVDVVVASVERSTQIVASQGVKIIADKSISDA 345
           + + L  I +   + E V +   L +R    V   S++    + +  G K   D  I   
Sbjct: 3   LKKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPI--VSSIGGFKTSVDYIIGLE 60

Query: 346 AESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKK 405
             + ++L+++ GG + +   +K   L   +K          A+C +   L K+GLL    
Sbjct: 61  PAN-FNLLVMIGGDSWSNDNKK---LLHFVKTAFQKNIPIAAICGAVDFLAKNGLLNNHS 116

Query: 406 ATAHPSVIGKL-----TNEVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRS 460
            T +   + K              + V D  ++T+ G A  I+F   I+ +        +
Sbjct: 117 HTGNFVYLWKDYKQYKPISSFVEKQAVRDKNLVTANGTAP-IEFTNLIL-EMIDFDTPEN 174

Query: 461 VAEGLVF 467
           + + +  
Sbjct: 175 IEKMMYM 181

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis} Length = 206

 Score =  136 bits (345), Expect = 5e-38
 Identities = 40/188 (21%), Positives = 69/188 (36%), Gaps = 15/188 (7%)

Query: 85  KKVLVPVGFGTEEMEAVIIVDVL-RRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCS 143
           KK L  +     + E V +   L +R    V   S++P   V +  G +   D  I    
Sbjct: 4   KKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDP--IVSSIGGFKTSVDYIIGLEP 61

Query: 144 HQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
              F+L+ + GG   S    D + L        ++     AIC A    L   GLL    
Sbjct: 62  AN-FNLLVMIGGDSWS---NDNKKLLHFVKTAFQKNIPIAAICGAVDF-LAKNGLLNNHS 116

Query: 204 ITCHPAFTDKL-----PTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKE 258
            T +  +  K      P    V+        + T+ G     EF   ++E +  ++  + 
Sbjct: 117 HTGNFVYLWKDYKQYKPISSFVEKQAVRDKNLVTANGTA-PIEFTNLILEMIDFDT-PEN 174

Query: 259 IGELLLMH 266
           I +++ M+
Sbjct: 175 IEKMMYMN 182

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} Length = 365

 Score =  164 bits (416), Expect = 2e-46
 Identities = 46/186 (24%), Positives = 95/186 (51%), Gaps = 6/186 (3%)

Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQG-VKIIADKSISDAAE 347
           +V I I    E+ E +   + L++A  +VVV     + +    +G +   AD + ++A  
Sbjct: 12  KVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIA 71

Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKAT 407
           S +D +++PGG+A  ++++++    + ++E    G++  AVC  P VL +  LL+ K+AT
Sbjct: 72  SEFDAVVIPGGMA-PDKMRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEGDLLRGKQAT 130

Query: 408 AHPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
              ++   + N   + ++   +VVDG +ITSR   ++  F  AI+S+     +  ++ + 
Sbjct: 131 GFIAISKDMMNAGADYLD-EALVVDGNLITSREPGDLAIFTTAILSRLGYGGKDAALPDE 189

Query: 465 LVFEYP 470
                 
Sbjct: 190 KDRNAE 195

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} Length = 365

 Score =  148 bits (376), Expect = 8e-41
 Identities = 46/210 (21%), Positives = 85/210 (40%), Gaps = 11/210 (5%)

Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGT-RLVADTSISNCS 143
           KKV + +    E+ E +I  + L++AG +V +       + +   G     AD + +   
Sbjct: 11  KKVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAI 70

Query: 144 HQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
              FD + +PGGM    ++R      +   +  E+ +L  A+C  P V L+   LLR KQ
Sbjct: 71  ASEFDAVVIPGGM-APDKMRRNPNTVRFVQEAMEQGKLVAAVCHGPQV-LIEGDLLRGKQ 128

Query: 204 ITCHPAFTDKLPTFWA--VKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGE 261
            T   A +  +    A  +   + V G + TSR PG    F   ++ +L        + +
Sbjct: 129 ATGFIAISKDMMNAGADYLDEALVVDGNLITSREPGDLAIFTTAILSRLGYGGKDAALPD 188

Query: 262 LLLMHNADNSLKKEEFNEVEWFFDRMPRVL 291
                  D + +  +  +  W       ++
Sbjct: 189 EK-----DRNAEWWKLAD-AWGGSTKGDIV 212

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans} Length = 190

 Score =  141 bits (357), Expect = 7e-40
 Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 10/172 (5%)

Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQG-----VKIIADKSIS 343
           ++ I  A+G EEIE+ +    +  A     + S+E    I + +G      K   D  +S
Sbjct: 11  KIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPGE-IQSMKGDIEPQEKYRVDHVVS 69

Query: 344 DAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKA 403
           +   S YD ++LPGG    ++L+      K +++   AG+   A+C  P  L + G+ + 
Sbjct: 70  EVQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSETGIAQG 129

Query: 404 KKATAHPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKF 452
            K T+  S+  +LT    + V+  + V D  V+TSR   ++  F   IV +F
Sbjct: 130 LKMTSWSSLKRELTLAGAQWVD-EECVTDKGVVTSRKPDDLPAFNKKIVEEF 180

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans} Length = 190

 Score =  123 bits (311), Expect = 3e-33
 Identities = 42/182 (23%), Positives = 67/182 (36%), Gaps = 9/182 (4%)

Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGT-----RLVADTSI 139
           KK+ +    G EE+E       +  AG    + S+EP  E+++  G      +   D  +
Sbjct: 10  KKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPG-EIQSMKGDIEPQEKYRVDHVV 68

Query: 140 SNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLL 199
           S      +D + LPGG     +LR  E   K      +  +   AIC  P   L   G+ 
Sbjct: 69  SEVQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWS-LSETGIA 127

Query: 200 RRKQITCHPAFTDKLPTFWA--VKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAK 257
           +  ++T   +   +L    A  V         V TSR P     F   +VE+      + 
Sbjct: 128 QGLKMTSWSSLKRELTLAGAQWVDEECVTDKGVVTSRKPDDLPAFNKKIVEEFAEGDHSS 187

Query: 258 EI 259
             
Sbjct: 188 RR 189

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} PDB: 1g2i_A Length = 168

 Score =  138 bits (349), Expect = 5e-39
 Identities = 37/167 (22%), Positives = 78/167 (46%), Gaps = 6/167 (3%)

Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAES 348
           +VL   A+G E++E++  +  ++    +V VAS +R   I    G  +  D +  +    
Sbjct: 4   KVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRGK-ITGKHGYSVNVDLTFEEVDPD 62

Query: 349 VYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATA 408
            +D ++LPGG A  E ++ +     + +      +   ++C  P +L    +LK ++ T+
Sbjct: 63  EFDALVLPGGKA-PEIVRLNEKAVMITRRMFEDDKPVASICHGPQILISAKVLKGRRGTS 121

Query: 409 HPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKF 452
             ++   + N   E ++  +VVVDG  ++SR   ++  +    V   
Sbjct: 122 TITIRDDVINAGAEWID-AEVVVDGNWVSSRHPGDLYAWMREFVKLL 167

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} PDB: 1g2i_A Length = 168

 Score =  120 bits (304), Expect = 2e-32
 Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 5/168 (2%)

Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
            KVL     G E++E +  +  ++  G +V +AS +   ++    G  +  D +      
Sbjct: 3   MKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRG-KITGKHGYSVNVDLTFEEVDP 61

Query: 145 QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQI 204
             FD + LPGG      +R  E    IT +  E+ +   +IC  P + L+   +L+ ++ 
Sbjct: 62  DEFDALVLPGGK-APEIVRLNEKAVMITRRMFEDDKPVASICHGPQI-LISAKVLKGRRG 119

Query: 205 TCHPAFTDKLPTFWA--VKSNIHVSGEVTTSRGPGTSFEFALCLVEQL 250
           T      D +    A  + + + V G   +SR PG  + +    V+ L
Sbjct: 120 TSTITIRDDVINAGAEWIDAEVVVDGNWVSSRHPGDLYAWMREFVKLL 167

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2 Length = 193

 Score =  126 bits (320), Expect = 1e-34
 Identities = 35/172 (20%), Positives = 75/172 (43%), Gaps = 5/172 (2%)

Query: 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQG-VKIIADKSISDA 345
             ++ + I +  E+ E  +  D  R+A  +V+    +    +   +G   +  DKSI + 
Sbjct: 23  SKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEV 82

Query: 346 AESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKK 405
             + +D ++LPGG +  + L+         ++   +G+   A+C  P +L    +++ +K
Sbjct: 83  TPAEFDALLLPGGHS-PDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRK 141

Query: 406 ATAHPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFG 454
            TA   +I  + N   E  +   VV   +++TSR   ++  F    +     
Sbjct: 142 LTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLGA 193

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2 Length = 193

 Score =  108 bits (273), Expect = 6e-28
 Identities = 41/185 (22%), Positives = 64/185 (34%), Gaps = 6/185 (3%)

Query: 72  PTTPEATNSAVPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGT 131
             +      A   KK+ V +    E+ E     D  R+AG +V     +    V+   G 
Sbjct: 11  LESTSLYKKAGLSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGE 70

Query: 132 RLV-ADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPA 190
             V  D SI   +   FD + LPGG      LR        T       +   AIC  P 
Sbjct: 71  ASVTIDKSIDEVTPAEFDALLLPGGH-SPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQ 129

Query: 191 VTLLPWGLLRRKQITCHPAFTDKLPTFWA--VKSNIHV-SGEVTTSRGPGTSFEFALCLV 247
           + L+   ++R +++T        +    A      + V   ++ TSR P     F    +
Sbjct: 130 L-LISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREAL 188

Query: 248 EQLFG 252
             L  
Sbjct: 189 RLLGA 193

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum} Length = 211

 Score = 97.6 bits (244), Expect = 1e-23
 Identities = 35/193 (18%), Positives = 74/193 (38%), Gaps = 13/193 (6%)

Query: 287 MP-RVLIPIANGSEEIEIVTIVDILRRA--KVDVVVASVERSTQIVASQGVKIIADKSIS 343
           +  R+ + + N  E +++   V+I        ++   S +    + +SQ V++       
Sbjct: 3   LSYRIDVLLFNKFETLDVFGPVEIFGNLQDDFELNFISSDGGL-VESSQKVRVETSLYTR 61

Query: 344 DAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKA 403
           D       ++ +PGG +G             +       +   +VC+   +L K G+L  
Sbjct: 62  DENI--EKILFVPGG-SGTREKVNDDNFINFIGNMVKESKYIISVCTGSALLSKAGILNG 118

Query: 404 KKATAHPSVIGKLTN-----EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHART 458
           K+AT +      +T        V   + V DG + TS G++  ID  L  +    G  + 
Sbjct: 119 KRATTNKRSFKWVTEQNEDVLWVKEARWVKDGNIYTSSGVSAGIDMTLGFIEDLIGKEKA 178

Query: 459 RSVAEGLVFEYPR 471
             ++  + + +  
Sbjct: 179 LEISRSIEY-FWN 190

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum} Length = 211

 Score = 64.5 bits (158), Expect = 3e-12
 Identities = 34/198 (17%), Positives = 67/198 (33%), Gaps = 26/198 (13%)

Query: 83  PPKKVLVPVGFGTEEMEAVIIVDVLRRA--GAQVTMASVEPQLEVEASSGTRLVADTSIS 140
              ++ V +    E ++    V++        ++   S +  L VE+S   R+       
Sbjct: 3   LSYRIDVLLFNKFETLDVFGPVEIFGNLQDDFELNFISSDGGL-VESSQKVRVETSLYTR 61

Query: 141 NCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAIC-------AAPAVTL 193
           + +     ++ +PGG  G+    + +          +E +   ++C        A     
Sbjct: 62  DENI--EKILFVPGG-SGTREKVNDDNFINFIGNMVKESKYIISVCTGSALLSKA----- 113

Query: 194 LPWGLLRRKQITCHPAFTDKLPTFWA----VKSNIHV-SGEVTTSRGPGTSFEFALCLVE 248
              G+L  K+ T +      +         VK    V  G + TS G     +  L  +E
Sbjct: 114 ---GILNGKRATTNKRSFKWVTEQNEDVLWVKEARWVKDGNIYTSSGVSAGIDMTLGFIE 170

Query: 249 QLFGESVAKEIGELLLMH 266
            L G+  A EI   +   
Sbjct: 171 DLIGKEKALEISRSIEYF 188

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV} Length = 253

 Score = 97.8 bits (244), Expect = 3e-23
 Identities = 32/183 (17%), Positives = 69/183 (37%), Gaps = 5/183 (2%)

Query: 289 RVLIPIANGSEEIEIVTIVDILRRAK-VDVVVASVERSTQIVASQGVKIIADKSISDAAE 347
           ++ + +  G   +++V    +        + + +      + +  G+ I+   +      
Sbjct: 25  QIAMLVYPGMTVMDLVGPHCMFGSLMGAKIYIVAKSLDP-VTSDAGLAIVPTATFGTCPR 83

Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKAT 407
            +  ++  PGG  G             + ++    +   +VCS  ++L   GLLK  KAT
Sbjct: 84  DL-TVLFAPGGTDGTLAAASDAETLAFMADRGARAKYITSVCSGSLILGAAGLLKGYKAT 142

Query: 408 AHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGL 465
           +H S    L     +    +VV D   IT  G+   +DF L++V++              
Sbjct: 143 SHWSCRDALAGFGAIPTEARVVRDRNRITGAGVTAGLDFGLSMVAELRDQTYAECAQLMS 202

Query: 466 VFE 468
            ++
Sbjct: 203 EYD 205

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV} Length = 253

 Score = 83.9 bits (208), Expect = 2e-18
 Identities = 35/216 (16%), Positives = 76/216 (35%), Gaps = 27/216 (12%)

Query: 67  LTLTTPTTPE-----ATNSAVPPKKVLVPVGF-GTEEMEAVIIVDVLRRA-GAQVTMASV 119
           ++L     P+          +  +++ + + + G   M+ V    +     GA++ + + 
Sbjct: 1   MSLHPHAMPDMGPDMNKVPWMGDEQIAM-LVYPGMTVMDLVGPHCMFGSLMGAKIYIVAK 59

Query: 120 EPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEK 179
                V + +G  +V   +   C      ++  PGG  G++            + +    
Sbjct: 60  SLDP-VTSDAGLAIVPTATFGTCPRD-LTVLFAPGGTDGTLAAASDAETLAFMADRGARA 117

Query: 180 RLYGAIC-------AAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSN-IHV-SGEV 230
           +   ++C       AA        GLL+  + T H +  D L  F A+ +    V     
Sbjct: 118 KYITSVCSGSLILGAA--------GLLKGYKATSHWSCRDALAGFGAIPTEARVVRDRNR 169

Query: 231 TTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMH 266
            T  G     +F L +V +L  ++ A+    +    
Sbjct: 170 ITGAGVTAGLDFGLSMVAELRDQTYAECAQLMSEYD 205

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A Length = 231

 Score = 96.9 bits (242), Expect = 3e-23
 Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 9/189 (4%)

Query: 287 MPR-VLIPIANGSEEIEIVTIVDILRRAK-VDVVVASVERSTQIVASQGVKIIADKSISD 344
           M   +   +    +++++    D+L     V V +   E    +VAS G+ + A  S +D
Sbjct: 4   MAVQIGFLLFPEVQQLDLTGPHDVLASLPDVQVHLIWKEPGP-VVASSGLVLQATTSFAD 62

Query: 345 AAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAK 404
                 D+I +PGG  G   L +       +++Q    R   +V +  +VL   GLL+ K
Sbjct: 63  CPP--LDVICIPGG-TGVGALMEDPQALAFIRQQAARARYVTSVSTGSLVLGAAGLLQGK 119

Query: 405 KATAHPSVIGKL--TNEVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVA 462
           +AT H +    L     +    +VV DG ++T  G+   IDFAL + ++ F  A  + V 
Sbjct: 120 RATTHWAYHELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRVQ 179

Query: 463 EGLVFEYPR 471
             L +  P 
Sbjct: 180 LQLEY-APA 187

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A Length = 231

 Score = 71.1 bits (175), Expect = 3e-14
 Identities = 51/193 (26%), Positives = 80/193 (41%), Gaps = 22/193 (11%)

Query: 84  PKKVLVPVGFGTEEMEAVIIVDVLRRA-GAQVTMASVEPQLEVEASSGTRLVADTSISNC 142
             ++   +    ++++     DVL      QV +   EP   V ASSG  L A TS ++C
Sbjct: 5   AVQIGFLLFPEVQQLDLTGPHDVLASLPDVQVHLIWKEPGP-VVASSGLVLQATTSFADC 63

Query: 143 SHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAIC-------AAPAVTLLP 195
                D+I +PGG      + D + L  I  +QA   R   ++        AA       
Sbjct: 64  PP--LDVICIPGGTGVGALMEDPQALAFIR-QQAARARYVTSVSTGSLVLGAA------- 113

Query: 196 WGLLRRKQITCHPAFTDKLPTFWAVKSN-IHV-SGEVTTSRGPGTSFEFALCLVEQLFGE 253
            GLL+ K+ T H A+ + L    A+  +   V  G + T  G     +FAL L  +LF  
Sbjct: 114 -GLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDA 172

Query: 254 SVAKEIGELLLMH 266
           + A+ +   L   
Sbjct: 173 ATAQRVQLQLEYA 185

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida} Length = 202

 Score = 81.8 bits (203), Expect = 3e-18
 Identities = 28/161 (17%), Positives = 63/161 (39%), Gaps = 9/161 (5%)

Query: 316 DVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLL 375
                S++    +++  G++++A +  + A +   DL+++ GG+    +      L +LL
Sbjct: 40  QFTPLSLDGDR-VLSDLGLELVATELSAAALKE-LDLLVVCGGLRTPLK---YPELDRLL 94

Query: 376 KEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNE----VVNGTKVVVDGK 431
            +    G   G + +    L + G+L     + HP     L+       +      +D  
Sbjct: 95  NDCAAHGMALGGLWNGAWFLGRAGVLDDYGCSIHPEQRASLSERSPQTRITPASFTLDRD 154

Query: 432 VITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPRS 472
            +++      ++  L +V + +G      V E L F   R 
Sbjct: 155 RLSAASPNGAMELMLGLVRRLYGDGLAEGVEEILSFSGARE 195

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus} Length = 209

 Score = 76.4 bits (189), Expect = 3e-16
 Identities = 39/206 (18%), Positives = 72/206 (34%), Gaps = 29/206 (14%)

Query: 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKV-------DVVVASVERSTQIVASQGVKIIA 338
           +  RV+     G     I++ ++IL  A            V +      ++   G+ +  
Sbjct: 7   KNLRVVALAPTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNRP-LIGRGGISVQP 65

Query: 339 DKSISDAAESVYDLIILPGGVAGAERLQK-SRILKKLLKEQKVAGRIYGAVCSSPIVLHK 397
                       +++I+       E L K    L   ++E  + G    A+ +   V+ K
Sbjct: 66  TAQWQSFDF--TNILIIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAK 123

Query: 398 HGLLKAKKATAH-----------PSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDFAL 446
            GLL+  KA  H           P +       ++   K ++DG V  S G  +     L
Sbjct: 124 AGLLQQNKAVMHSYFAHLFGELFPEI------MLMTEQKALIDGNVYLSSGPYSHSSVML 177

Query: 447 AIVSKFFGHARTRSVAEGLVFEYPRS 472
            IV ++FG   TR++    +      
Sbjct: 178 EIVEEYFGKH-TRNLGNQFLSTIESE 202

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus} Length = 209

 Score = 42.9 bits (102), Expect = 8e-05
 Identities = 26/196 (13%), Positives = 58/196 (29%), Gaps = 25/196 (12%)

Query: 78  TNSAVPPKKVLVPVGFGTEEMEAVIIVDVLRRAGA-------QVTMASVEPQLEVEASSG 130
           + +     +V+     G      +  +++L  A            + +   +  +    G
Sbjct: 2   SLTNKKNLRVVALAPTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNR-PLIGRGG 60

Query: 131 TRLVADTSISNCSHQVFDLIALPGGM--PGSVRLRDCEILKKITSKQAEEKRLYGAICAA 188
             +       +      +++ +        S+   D  +   I  +   +     AI   
Sbjct: 61  ISVQPTAQWQSFDF--TNILIIGSIGDPLESLDKIDPALFDWIR-ELHLKGSKIVAIDTG 117

Query: 189 PAVTLLPWGLLRRKQITCHPAFTDKL----PTFWAVK---SNIHV-SGEVTTSRGPGTSF 240
               +   GLL++ +   H  F        P    +        +  G V  S GP +  
Sbjct: 118 -IFVVAKAGLLQQNKAVMHSYFAHLFGELFP---EIMLMTEQKALIDGNVYLSSGPYSHS 173

Query: 241 EFALCLVEQLFGESVA 256
              L +VE+ FG+   
Sbjct: 174 SVMLEIVEEYFGKHTR 189

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A Length = 232

 Score = 57.7 bits (139), Expect = 1e-09
 Identities = 35/189 (18%), Positives = 65/189 (34%), Gaps = 40/189 (21%)

Query: 287 MPRVLIPIA-----NGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIAD-- 339
           M ++ + ++     +GSE  E V  +  + R+    V  + ++    V +          
Sbjct: 6   MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTET 65

Query: 340 ---------------KSISDAAESVYDLIILPGGVAGAERLQKSRI----------LKKL 374
                          + ++ A  +  D +I+PGG   A+ L               LK L
Sbjct: 66  RNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKAL 125

Query: 375 LKEQKVAGRIYGAVCSSPIVLHKHGLLKAK-KATAHPSVIGKLTN---EVVNG--TKVVV 428
            +    AG+  G +C +P +L K      +            L     E V      +VV
Sbjct: 126 AQAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTAEVLEEMGAEHVPCPVDDIVV 185

Query: 429 D--GKVITS 435
           D   K++T+
Sbjct: 186 DEDNKIVTT 194

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A Length = 232

 Score = 54.3 bits (130), Expect = 1e-08
 Identities = 35/162 (21%), Positives = 60/162 (37%), Gaps = 32/162 (19%)

Query: 85  KKVLV-----PVGFGTEEMEAVIIVDVLRRAGAQVTMASVE-PQLEV------EASSGTR 132
           KK+ V      V  G+E  EAV+ +  + R+GAQ    + +  Q++V      EA + TR
Sbjct: 7   KKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETR 66

Query: 133 LVADTS----------ISNCSHQVFDLIALPGGMPGSVRLRDC----------EILKKIT 172
            V   +          ++       D + +PGG   +  L +             LK + 
Sbjct: 67  NVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALA 126

Query: 173 SKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKL 214
               +  +  G +C APA+    +    R  I       + L
Sbjct: 127 QAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTAEVL 168

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2 Length = 224

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 39/195 (20%), Positives = 58/195 (29%), Gaps = 40/195 (20%)

Query: 295 ANGSEEIEIVTIVDILRRAKVDVVVAS------------VERSTQIVASQGVKIIADKSI 342
             G    E      + +    DV VAS            +       A     +     +
Sbjct: 23  KTGLWLEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARL 82

Query: 343 SDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLH----KH 398
           S      +D I LPGG         +  L+ +L++    GRI  AVC  P  L     K 
Sbjct: 83  SKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKD 142

Query: 399 G--LLKAKKATAHPSVIGKLTN------------------EVVNGT----KVVVDGKVIT 434
           G  ++K K  T+      +                       V G       V DG +IT
Sbjct: 143 GTPIVKGKTVTSFTDEEEREVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLIT 202

Query: 435 SRGLANVIDFALAIV 449
            +   +    A  +V
Sbjct: 203 GQNPQSSRSTAEKVV 217

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2 Length = 224

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 41/219 (18%), Positives = 67/219 (30%), Gaps = 55/219 (25%)

Query: 84  PKKVLV------------PVGFGTEEMEAVIIVDVLRRAGAQVTMAS------------V 119
            K+VL+              G      E  +   V +  G  V +AS            +
Sbjct: 5   SKRVLMVVTNHTTITDDHKTGL--WLEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSI 62

Query: 120 EPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEK 179
             +    A +   L     +S      FD I LPGG        D E L+ +  + AE+ 
Sbjct: 63  NEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDG 122

Query: 180 RLYGAICAAPAVTL---LPWG--LLRRKQITCHP-------AFTDKLPTFW--------- 218
           R+  A+C  P+  +      G  +++ K +T               +P F          
Sbjct: 123 RIIAAVCHGPSGLVNATYKDGTPIVKGKTVTSFTDEEEREVGLDVHMP-FLLESTLRLRG 181

Query: 219 -------AVKSNIHVSGEVTTSRGPGTSFEFALCLVEQL 250
                           G + T + P +S   A  +V  L
Sbjct: 182 ANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAAL 220

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis} Length = 242

 Score = 54.7 bits (131), Expect = 1e-08
 Identities = 29/180 (16%), Positives = 55/180 (30%), Gaps = 33/180 (18%)

Query: 85  KKVLV-----PVGFGTEEMEAVIIVDVLRRAGAQVTMASV-EPQLEV------EASSGTR 132
               V         G+E  EAV+++  L R        +  + Q +V      E+    R
Sbjct: 24  LNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVR 83

Query: 133 LVAD----------TSISNCSHQVFDLIALPGGMPGSVRLRDC-----------EILKKI 171
            +              I     + FD++ +PGG   +    +               K  
Sbjct: 84  NILVESARIARGSVYDIEQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNA 143

Query: 172 TSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVT 231
             +    K+  GA+C +PAV +     + + ++T        +     V  +      V 
Sbjct: 144 VREFYNAKKPIGAVCISPAVVVALLKDIAKVKVTIGEDSNGLIDKMGGVHVDCPTIKSVK 203

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis} Length = 242

 Score = 52.7 bits (126), Expect = 6e-08
 Identities = 33/175 (18%), Positives = 54/175 (30%), Gaps = 36/175 (20%)

Query: 297 GSEEIEIVTIVDILRRAKVDVVVAS-----------------VERSTQIVASQGVKIIAD 339
           GSE  E V ++  L R  V+    +                  E    +V S  +   + 
Sbjct: 38  GSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSV 97

Query: 340 KSISDAAESVYDLIILPGG-----------VAGAERLQKSRILKKLLKEQKVAGRIYGAV 388
             I       +D++++PGG               E        K  ++E   A +  GAV
Sbjct: 98  YDIEQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAV 157

Query: 389 CSSPIVLHKH-GLLKAKKATAHPSVIGKLTN-----EVVNGTKVVVD--GKVITS 435
           C SP V+      +   K T      G +             K V D   ++ + 
Sbjct: 158 CISPAVVVALLKDIAKVKVTIGEDSNGLIDKMGGVHVDCPTIKSVKDDVNRIFSC 212

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 2e-07
 Identities = 36/228 (15%), Positives = 71/228 (31%), Gaps = 63/228 (27%)

Query: 258 EIGEL------LLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEI-EIVT----- 305
           E GE       +L    D  +   +  +V+   D    +L       EEI  I+      
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQ---DMPKSIL-----SKEEIDHIIMSKDAV 61

Query: 306 -----IVDILRRAKVDVVVASVERSTQ-----IVASQGVKIIADKSISDAAESVYDL--- 352
                +   L   + ++V   VE   +     +++    +      ++       D    
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121

Query: 353 ---IILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAH 409
              +     V    RLQ    L++ L E + A           +++   G+L + K    
Sbjct: 122 DNQVFAKYNV---SRLQPYLKLRQALLELRPAKN---------VLI--DGVLGSGK---- 163

Query: 410 PSVIGKLTNEVVNGTKVVV--DGKV--ITSRGLANVIDFALAIVSKFF 453
            +    +  +V    KV    D K+  +      N  +  L ++ K  
Sbjct: 164 -TW---VALDVCLSYKVQCKMDFKIFWLNL-KNCNSPETVLEMLQKLL 206

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A Length = 291

 Score = 50.0 bits (119), Expect = 6e-07
 Identities = 35/260 (13%), Positives = 66/260 (25%), Gaps = 68/260 (26%)

Query: 67  LTLTTPTTPEATNSAVP-----PKKVLVPV--------------GFGTEEMEAVIIVDVL 107
           L+  T    +      P       K+LV                  G   +E ++ +  L
Sbjct: 26  LSQYTSPVSDLDGVDYPKPYRGKHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHL 85

Query: 108 RRAGAQVTMASV---EPQLE------------------VEASSGTRLVADTSISNCSHQV 146
             AG +  +A++     + E                         + +AD   S  +   
Sbjct: 86  HAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADVVASLNADSE 145

Query: 147 FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTL---LPWGLLRRKQ 203
           +  I +PGG    + L + + +        +  R   ++C  PA  L        L    
Sbjct: 146 YAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYS 205

Query: 204 ITCHPAFTDKLPTFWAV-------------------------KSNIHVSGEVTTSRGPGT 238
           I   P   DK                                   +H   ++ T   P  
Sbjct: 206 ICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFA 265

Query: 239 SFEFALCLVEQLFGESVAKE 258
           +        +++       E
Sbjct: 266 ANALGKLAAQEMLAAYAGLE 285

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A Length = 291

 Score = 48.5 bits (115), Expect = 2e-06
 Identities = 27/142 (19%), Positives = 40/142 (28%), Gaps = 29/142 (20%)

Query: 337 IADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVL- 395
           +AD   S  A+S Y  I +PGG      L +S+ +   L+      R   ++C  P    
Sbjct: 133 LADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFL 192

Query: 396 ---HKHGLLKAKKATAHPSVIGKLTNEVVN-------------------------GTKVV 427
              H    L      A P    K T E+                             +V 
Sbjct: 193 ALRHGDNPLNGYSICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVH 252

Query: 428 VDGKVITSRGLANVIDFALAIV 449
            D K++T               
Sbjct: 253 KDRKLLTGDSPFAANALGKLAA 274

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A Length = 243

 Score = 46.9 bits (111), Expect = 5e-06
 Identities = 34/237 (14%), Positives = 62/237 (26%), Gaps = 72/237 (30%)

Query: 83  PPKKVLV--------------PVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEAS 128
            PKKVL+                G    E   +   +  R+ G +V   S   +   +  
Sbjct: 2   APKKVLLALTSYNDVFYSDGAKTGVFVVEA--LHPFNTFRKEGFEVDFVSETGKFGWDEH 59

Query: 129 S---------------------GTRLVADTSISNCSHQVFDLIALPGGMPGSVR-LRDCE 166
           S                        L    +    +   + +     G  G++      +
Sbjct: 60  SLAKDFLNGQDETDFKNKDSDFNKTLAKIKTPKEVNADDYQIFFASAG-HGTLFDYPKAK 118

Query: 167 ILKKITSKQAEEKRLYGAICAAPA----VTLLPWG--LLRRKQITCHPAFTDKL------ 214
            L+ I S+      +  A+C  PA    +T    G  L+  K IT      + +      
Sbjct: 119 DLQDIASEIYANGGVVAAVCHGPAIFDGLTDKKTGRPLIEGKSITGFTDVGETILGVDSI 178

Query: 215 ---PTFWAV------------------KSNIHVSGEVTTSRGPGTSFEFALCLVEQL 250
                   V                         G + T   P ++   A+  ++ L
Sbjct: 179 LKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDAL 235

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A Length = 243

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 22/148 (14%), Positives = 41/148 (27%), Gaps = 34/148 (22%)

Query: 336 IIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVL 395
           +   K+  +     Y +     G        K++ L+ +  E    G +  AVC  P + 
Sbjct: 85  LAKIKTPKEVNADDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIF 144

Query: 396 -------HKHGLLKAKKATAHPSVI--------------------------GKLTNEVVN 422
                      L++ K  T    V                            K    V  
Sbjct: 145 DGLTDKKTGRPLIEGKSITGFTDVGETILGVDSILKAKNLATVEDVAKKYGAKYLAPVGP 204

Query: 423 GT-KVVVDGKVITSRGLANVIDFALAIV 449
                + DG+++T    A+    A+  +
Sbjct: 205 WDDYSITDGRLVTGVNPASAHSTAVRSI 232

>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3 Length = 715

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 36/212 (16%), Positives = 70/212 (33%), Gaps = 11/212 (5%)

Query: 251 FGESVAKEIG-------ELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEI 303
             +++A+ +G                 +L + EF           RV I IA+G + +  
Sbjct: 492 LAQTIAEMVGGEAPTTTNHPNHGRKTINLSQTEFPPATPTIKSR-RVAIIIADGYDNVAY 550

Query: 304 VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE 363
                 +   +   +V    R +++ A+ G  +     +     ++ D I +PGG   AE
Sbjct: 551 DAAYAAISANQAIPLVIG-PRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAE 609

Query: 364 RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNG 423
            L K+      ++E     +  GA   +  ++ K   L     ++   V    +  VV  
Sbjct: 610 TLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIALPQVTVSSEAEVHE--SYGVVTL 667

Query: 424 TKVVVDGKVITSRGLANVIDFALAIVSKFFGH 455
            KV  +      +       F          H
Sbjct: 668 KKVKPESFTDAVKIAKGAAGFLGEFFYAIAQH 699

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A* Length = 244

 Score = 42.4 bits (99), Expect = 1e-04
 Identities = 29/234 (12%), Positives = 55/234 (23%), Gaps = 66/234 (28%)

Query: 83  PPKKVLVPV------------GFGTEEMEAVIIVDVLRRAGAQVTMASVE---------- 120
            PK+ L+ +              G   +E +   D   + G +V   S            
Sbjct: 2   TPKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEHYL 61

Query: 121 PQLEVEASSGTRLVAD-----------TSISNCSHQVFDLIALPGGMPGSVRLRDCEILK 169
           P+  +                       + +  +   + +     G          + L+
Sbjct: 62  PKSFIGGEDKMNFETKNSAFNKALARIKTANEVNASDYKVFFASAGHGALFDYPKAKNLQ 121

Query: 170 KITSKQAEEKRLYGAICAAPAVTL------LPWGLLRRKQITCHPAFTDKL--------- 214
            I SK      +  AIC  P +            L+  K IT  P   +           
Sbjct: 122 DIASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKAITGFPLEGEIALGVDDILRS 181

Query: 215 PTFWAV------------------KSNIHVSGEVTTSRGPGTSFEFALCLVEQL 250
                V                         G++ T     +S+   +  +  L
Sbjct: 182 RKLTTVERVANKNGAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINAL 235

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A* Length = 244

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 26/230 (11%), Positives = 57/230 (24%), Gaps = 67/230 (29%)

Query: 287 MPRVLIPIANGSEEI------------EIVTIVDILRRAKVDVVVASVERSTQIV----- 329
             R LI + +                 EI+   D   +   +V   S             
Sbjct: 3   PKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEHYLP 62

Query: 330 ----------------ASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKK 373
                           ++    +   K+ ++   S Y +     G        K++ L+ 
Sbjct: 63  KSFIGGEDKMNFETKNSAFNKALARIKTANEVNASDYKVFFASAGHGALFDYPKAKNLQD 122

Query: 374 LLKEQKVAGRIYGAVCSSPIVL-------HKHGLLKAKKATAHPSVIGKLTN-------- 418
           +  +    G +  A+C  P++            L++ K  T  P                
Sbjct: 123 IASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKAITGFPLEGEIALGVDDILRSR 182

Query: 419 --------------EVVNGT-----KVVVDGKVITSRGLANVIDFALAIV 449
                         + +          + DGK++T     +     +  +
Sbjct: 183 KLTTVERVANKNGAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAI 232

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	472
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	100.0
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	100.0
3gra_A	202	Transcriptional regulator, ARAC family; transcript	100.0
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	100.0
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	100.0
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	100.0
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	100.0
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	100.0
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	100.0
3er6_A	209	Putative transcriptional regulator protein; struct	100.0
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	100.0
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	100.0
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	100.0
4hcj_A	177	THIJ/PFPI domain protein; structural genomics, PSI	100.0
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	100.0
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	100.0
3gra_A	202	Transcriptional regulator, ARAC family; transcript	100.0
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	100.0
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	100.0
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	100.0
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	100.0
3er6_A	209	Putative transcriptional regulator protein; struct	100.0
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	100.0
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	100.0
4hcj_A	177	THIJ/PFPI domain protein; structural genomics, PSI	100.0
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	100.0
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	100.0
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	100.0
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	100.0
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	100.0
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	100.0
2fex_A	188	Conserved hypothetical protein; structural genomic	100.0
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	100.0
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	100.0
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	100.0
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	100.0
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	100.0
2fex_A	188	Conserved hypothetical protein; structural genomic	99.98
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	99.98
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	99.98
1u9c_A	224	APC35852; structural genomics, protein structure i	99.97
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	99.97
1u9c_A	224	APC35852; structural genomics, protein structure i	99.97
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	99.96
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	99.96
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	99.96
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	99.96
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	99.96
3n7t_A	247	Macrophage binding protein; seattle structural gen	99.96
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	99.95
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	99.95
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	99.95
3n7t_A	247	Macrophage binding protein; seattle structural gen	99.95
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	99.94
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	99.94
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	99.93
1sy7_A	715	Catalase 1; heme oxidation, singlet oxygen, oxidor	99.89
1sy7_A	715	Catalase 1; heme oxidation, singlet oxygen, oxidor	99.85
3ttv_A	753	Catalase HPII; heme orientation, oxidoreductase; H	99.84
2iuf_A	688	Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen	99.76
3ej6_A	688	Catalase-3; heme, hydrogen iron, metal-binding, ox	99.73
3ttv_A	753	Catalase HPII; heme orientation, oxidoreductase; H	99.72
2iuf_A	688	Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen	99.56
3ej6_A	688	Catalase-3; heme, hydrogen iron, metal-binding, ox	99.48
3d54_D	213	Phosphoribosylformylglycinamidine synthase 1; alph	99.04
3d54_D	213	Phosphoribosylformylglycinamidine synthase 1; alph	98.86
2nv0_A	196	Glutamine amidotransferase subunit PDXT; 3-layer(A	98.07
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	98.0
3m3p_A	250	Glutamine amido transferase; structural genomics,	97.99
1q7r_A	219	Predicted amidotransferase; structural genomics, Y	97.96
2iss_D	208	Glutamine amidotransferase subunit PDXT; (beta/alp	97.93
1q7r_A	219	Predicted amidotransferase; structural genomics, Y	97.88
2nv0_A	196	Glutamine amidotransferase subunit PDXT; 3-layer(A	97.87
1ka9_H	200	Imidazole glycerol phosphtate synthase; riken stru	97.78
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	97.75
2iss_D	208	Glutamine amidotransferase subunit PDXT; (beta/alp	97.73
2ywd_A	191	Glutamine amidotransferase subunit PDXT; pyridoxin	97.72
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	97.66
1ka9_H	200	Imidazole glycerol phosphtate synthase; riken stru	97.61
3m3p_A	250	Glutamine amido transferase; structural genomics,	97.6
3ugj_A	1303	Phosphoribosylformylglycinamidine synthase; amidot	97.54
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	97.53
2ywd_A	191	Glutamine amidotransferase subunit PDXT; pyridoxin	97.48
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	97.36
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	97.31
2a9v_A	212	GMP synthase; structural genomics, joint center fo	97.28
3ugj_A	1303	Phosphoribosylformylglycinamidine synthase; amidot	97.23
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	97.21
2ywj_A	186	Glutamine amidotransferase subunit PDXT; uncharact	97.17
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	97.13
1gpw_B	201	Amidotransferase HISH; lyase/transferase, complex	97.1
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	97.05
2ywj_A	186	Glutamine amidotransferase subunit PDXT; uncharact	96.94
1gpw_B	201	Amidotransferase HISH; lyase/transferase, complex	96.92
1a9x_B	379	Carbamoyl phosphate synthetase (small chain); amid	96.91
4gud_A	211	Imidazole glycerol phosphate synthase subunit His;	96.77
4gud_A	211	Imidazole glycerol phosphate synthase subunit His;	96.72
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	96.67
2v4u_A	289	CTP synthase 2; pyrimidine biosynthesis, glutamine	96.59
1fy2_A	229	Aspartyl dipeptidase; serine protease, catalytic t	96.58
3l4e_A	206	Uncharacterized peptidase LMO0363; hypothetical pr	96.41
2vpi_A	218	GMP synthase; guanine monophosphate synthetase, ph	96.05
2a9v_A	212	GMP synthase; structural genomics, joint center fo	95.93
2vdj_A	301	Homoserine O-succinyltransferase; methionine biosy	95.87
2vdj_A	301	Homoserine O-succinyltransferase; methionine biosy	95.87
2w7t_A	273	CTP synthetase, putative cytidine triphosphate syn	95.84
2h2w_A	312	Homoserine O-succinyltransferase; TM0881, (EC 2.3.	95.84
3fij_A	254	LIN1909 protein; 11172J, uncharacterized protein,	95.8
1a9x_B	379	Carbamoyl phosphate synthetase (small chain); amid	95.78
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	95.71
3l4e_A	206	Uncharacterized peptidase LMO0363; hypothetical pr	95.58
1fy2_A	229	Aspartyl dipeptidase; serine protease, catalytic t	95.57
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	95.56
2h2w_A	312	Homoserine O-succinyltransferase; TM0881, (EC 2.3.	95.55
3uow_A	556	GMP synthetase; structural genomics consortium, SG	95.49
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	95.45
2vpi_A	218	GMP synthase; guanine monophosphate synthetase, ph	95.01
3r75_A	645	Anthranilate/para-aminobenzoate synthases compone;	94.68
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	94.56
3uow_A	556	GMP synthetase; structural genomics consortium, SG	94.45
2w7t_A	273	CTP synthetase, putative cytidine triphosphate syn	94.19
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	94.11
2v4u_A	289	CTP synthase 2; pyrimidine biosynthesis, glutamine	93.98
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	93.56
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	93.15
3r75_A	645	Anthranilate/para-aminobenzoate synthases compone;	93.1
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	92.03
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	91.87
3fij_A	254	LIN1909 protein; 11172J, uncharacterized protein,	91.67
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	91.39
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	90.04
3en0_A	291	Cyanophycinase; serine protease, beta peptide spec	89.45
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	89.37
3en0_A	291	Cyanophycinase; serine protease, beta peptide spec	89.2
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	88.47
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	86.96
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	86.18
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	85.98
3rht_A	259	(gatase1)-like protein; structural genomics, PSI-b	85.21
3rht_A	259	(gatase1)-like protein; structural genomics, PSI-b	85.18
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	84.36
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	82.12

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=100.00  E-value=4.2e-62  Score=500.72  Aligned_cols=341  Identities=18%  Similarity=0.238  Sum_probs=306.6

Q ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCc---------------ceeccCCceeeeCCCcCCCCCCc
Q 012037           82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQL---------------EVEASSGTRLVADTSISNCSHQV  146 (472)
Q Consensus        82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~---------------~v~~~~G~~v~~d~~~~~~~~~~  146 (472)
                      ..++||+||++|||+..|+..++++|+++||+++++|++++.               .++++.|..+.+|.++++.++.+
T Consensus        10 ~~~~kv~ill~dg~e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~   89 (396)
T 3uk7_A           10 ANSRTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSK   89 (396)
T ss_dssp             -CCCEEEEECCTTEEHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGG
T ss_pred             hcCCeEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCccc
Confidence            457899999999999999999999999999999999998541               35577899999999999988789


Q ss_pred             ccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC--CccccC--
Q 012037          147 FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKS--  222 (472)
Q Consensus       147 ~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~~--  222 (472)
                      ||+|+||||. +...+..++.+.+||+++++++|+|+++|+| .++|+++|||+||++|+||.+.+.|++  ++|++.  
T Consensus        90 ~D~livpGG~-~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G-~~~La~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~  167 (396)
T 3uk7_A           90 YDGLVIPGGR-APEYLALTASVVELVKEFSRSGKPIASICHG-QLILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPIT  167 (396)
T ss_dssp             CSEEEECCBS-HHHHHTTCHHHHHHHHHHHHTTCCEEEETTT-HHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCCSS
T ss_pred             CCEEEECCCc-chhhcccCHHHHHHHHHHHHcCCEEEEECch-HHHHHhccccCCCEeecCcchHHHHHHCCCEEECCCC
Confidence            9999999995 4555778999999999999999999999996 569999999999999999999998875  555543  


Q ss_pred             --cEEEeCCEEeCCCCCChHHHHHHHHHHHhCchhHHhhhhccccccCCcchhhhcccccccccCCCCEEEEEeCCCCCH
Q 012037          223 --NIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEE  300 (472)
Q Consensus       223 --~~v~Dg~iiTa~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~~~~~~~~~~~~n~~~~~~~~~~~V~il~~~g~~~  300 (472)
                        .+|+|||+|||+|+.++.||++++|+++.|++.                             ..++||+|+++|||++
T Consensus       168 ~~~~v~Dg~iiT~~g~~~~~d~al~li~~l~g~~~-----------------------------~~~~ki~ill~dg~~~  218 (396)
T 3uk7_A          168 PDVCVVDGSLITAATYEGHPEFIQLFVKALGGKIT-----------------------------GANKRILFLCGDYMED  218 (396)
T ss_dssp             TTCEEEETTEEEESSGGGHHHHHHHHHHHTTCEEE-----------------------------CCCCEEEEECCTTEEH
T ss_pred             CcceEecCCEEEecCcccHHHHHHHHHHHHhccch-----------------------------hccceEEEEecCCCcc
Confidence              489999999999999999999999999998752                             2568999999999999


Q ss_pred             HHHHHHHHHHHhCCCeEEEEEecCCcc----------------eecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037          301 IEIVTIVDILRRAKVDVVVASVERSTQ----------------IVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER  364 (472)
Q Consensus       301 ~e~~~~~d~l~~a~~~v~~vs~~~~~~----------------v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~  364 (472)
                      .|+..++++|+++||+|+++|++++ +                ++++.|..+.++..+++++..+||+|+||||. +...
T Consensus       219 ~e~~~~~~~l~~ag~~v~~vs~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~livpGg~-~~~~  296 (396)
T 3uk7_A          219 YEVKVPFQSLQALGCQVDAVCPEKK-AGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSSYDALVIPGGR-APEY  296 (396)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECTTCC-TTCEECEEEEECCSSSSCEEEECCCEECCSCGGGCCGGGCSEEEECCBS-HHHH
T ss_pred             hhHHHHHHHHHHCCCEEEEECCCCC-CCcccccccccccccchhhhcCCceeeccCCHHHCCcccCCEEEECCCc-chhh
Confidence            9999999999999999999999986 4                56788999999999999877899999999997 4666


Q ss_pred             ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc--ceecCC----cEEECCCEEEcCCh
Q 012037          365 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGT----KVVVDGKVITSRGL  438 (472)
Q Consensus       365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~~----~vv~dg~iiTa~g~  438 (472)
                      +..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.++.  ..+.+.    ++|+|||+|||+|+
T Consensus       297 ~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~~v~Dg~iiTs~g~  376 (396)
T 3uk7_A          297 LALNEHVLNIVKEFMNSEKPVASICHGQQILAAAGVLKGRKCTAYPAVKLNVVLGGGTWLEPDPIDRCFTDGNLVTGAAW  376 (396)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHHTTTTTTCEECCCGGGHHHHHHTTCEECCCSSTTCEEEETTEEEESSG
T ss_pred             hccCHHHHHHHHHHHHCCCEEEEEchHHHHHHHcCCcCCCEEecCccHHHHHHHCCCEEEcCCCceeEEEcCCEEECCCc
Confidence            778999999999999999999999999999999999999999999999988865  344443    59999999999999


Q ss_pred             hhHHHHHHHHHHHhcCH
Q 012037          439 ANVIDFALAIVSKFFGH  455 (472)
Q Consensus       439 ~~~~d~al~li~~~~g~  455 (472)
                      .+++||++++|+++.|.
T Consensus       377 ~~~~d~~l~li~~l~~~  393 (396)
T 3uk7_A          377 PGHPEFVSQLMALLGIQ  393 (396)
T ss_dssp             GGHHHHHHHHHHHHTCE
T ss_pred             hhHHHHHHHHHHHhccc
Confidence            99999999999999873

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}

Probab=100.00  E-value=6.1e-39  Score=295.74  Aligned_cols=185  Identities=35%  Similarity=0.615  Sum_probs=171.6

Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037          286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  365 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~  365 (472)
                      +++||+|+++|||+++|+..++++|+++||+++++|++++.++++++|+++.+|..+++++..+||+||||||..+...+
T Consensus         4 m~kkv~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~~~~   83 (190)
T 4e08_A            4 MSKSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAM   83 (190)
T ss_dssp             CCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHHHHH
T ss_pred             CCcEEEEEECCCchHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCChHHHHh
Confidence            56899999999999999999999999999999999999832899999999999999999877789999999996445567


Q ss_pred             cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc-ceec-CCcEEECCCEEEcCChhhHHH
Q 012037          366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN-EVVN-GTKVVVDGKVITSRGLANVID  443 (472)
Q Consensus       366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~-~~~~-~~~vv~dg~iiTa~g~~~~~d  443 (472)
                      ..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|++ ..+. ++.+|+|||+|||+|+.+++|
T Consensus        84 ~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~~~v~dg~iiTs~g~~a~~d  163 (190)
T 4e08_A           84 GESSLVGDLLRSQESGGGLIAAICAAPTVLAKHGVASGKSLTSYPSMKPQLVNNYSYVDDKTVVKDGNLITSRGPGTAYE  163 (190)
T ss_dssp             HHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCSTTCEECCCGGGGGGSSSSSEECSSCSEEEETTEEEECSGGGHHH
T ss_pred             hhCHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCcCCCeEEeCcCHHHHHhcCCcccCCCcEEEECCEEECCChHHHHH
Confidence            78999999999999999999999999999999999999999999999999987 3444 589999999999999999999


Q ss_pred             HHHHHHHHhcCHHHHHHHHhhcccccC
Q 012037          444 FALAIVSKFFGHARTRSVAEGLVFEYP  470 (472)
Q Consensus       444 ~al~li~~~~g~~~A~~va~~l~~~~~  470 (472)
                      |++++|++++|++.|+++++.|+++|.
T Consensus       164 ~al~li~~~~g~~~a~~va~~l~~~~~  190 (190)
T 4e08_A          164 FALKIAEELAGKEKVQEVAKGLLVAYN  190 (190)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHTCCC-
T ss_pred             HHHHHHHHhcCHHHHHHHHHhhCcccC
Confidence            999999999999999999999999884

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}

Probab=100.00  E-value=1.4e-38  Score=296.01  Aligned_cols=182  Identities=19%  Similarity=0.315  Sum_probs=162.9

Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhCC------CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCC
Q 012037          286 RMPRVLIPIANGSEEIEIVTIVDILRRAK------VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGV  359 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~------~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~  359 (472)
                      +++||+|+++|||+++|+.+++|+|+.+|      |+|+++|.+++ ++++++|+++.+| .+++++..+||+||||||.
T Consensus         4 ~~~~v~ill~~g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~-~v~~~~G~~i~~d-~l~~~~~~~~D~livpGG~   81 (202)
T 3gra_A            4 APYRVDFILLEHFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGD-RVLSDLGLELVAT-ELSAAALKELDLLVVCGGL   81 (202)
T ss_dssp             -CEEEEEEECTTBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSS-EEEBTTSCEEECE-ECCSGGGTTCSEEEEECCT
T ss_pred             CcEEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC-ceEcCCCCEEECC-CcccccCCCCCEEEEeCCC
Confidence            46799999999999999999999999987      99999999997 9999999999999 9998666889999999997


Q ss_pred             cchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc----ceecCCcEEECCCEEEc
Q 012037          360 AGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN----EVVNGTKVVVDGKVITS  435 (472)
Q Consensus       360 ~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~----~~~~~~~vv~dg~iiTa  435 (472)
                      .. ... . +.+++||+++++++++|++||+|+++||++|||+||++|+||...+.|++    ..+.++.+|+|||+|||
T Consensus        82 ~~-~~~-~-~~l~~~l~~~~~~g~~iaaIC~G~~~La~aGLL~gr~aTth~~~~~~l~~~~p~~~~~~~~~v~dg~iiTs  158 (202)
T 3gra_A           82 RT-PLK-Y-PELDRLLNDCAAHGMALGGLWNGAWFLGRAGVLDDYGCSIHPEQRASLSERSPQTRITPASFTLDRDRLSA  158 (202)
T ss_dssp             TC-CSC-C-TTHHHHHHHHHHHTCEEEEETTHHHHHHHHTCCTTEEECCCGGGHHHHHHHCTTEEECSSSEEEETTEEEE
T ss_pred             ch-hhc-c-HHHHHHHHHHHhhCCEEEEECHHHHHHHHcCCcCCCcEEeChhHHHHHHHHCCCCEecCCeEEEeCCEEEC
Confidence            43 333 3 89999999999999999999999999999999999999999999888875    35567799999999999


Q ss_pred             CChhhHHHHHHHHHHHhcCHHHHHHHHhhcccccCCC
Q 012037          436 RGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPRS  472 (472)
Q Consensus       436 ~g~~~~~d~al~li~~~~g~~~A~~va~~l~~~~~r~  472 (472)
                      +|+++++||++++|++++|++.|+++++.|++++.|.
T Consensus       159 ~G~~a~~dlal~li~~~~G~~~A~~va~~l~~~~~~~  195 (202)
T 3gra_A          159 ASPNGAMELMLGLVRRLYGDGLAEGVEEILSFSGARE  195 (202)
T ss_dssp             SSHHHHHHHHHHHHHHHHCHHHHHHHHHHHC------
T ss_pred             CCHHHHHHHHHHHHHHHhCHHHHHHHHHHhCcCcccc
Confidence            9999999999999999999999999999999998873

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}

Probab=100.00  E-value=2.7e-38  Score=295.97  Aligned_cols=182  Identities=19%  Similarity=0.353  Sum_probs=169.7

Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhCC--CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh
Q 012037          286 RMPRVLIPIANGSEEIEIVTIVDILRRAK--VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE  363 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~--~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~  363 (472)
                      +++||+|+++|||+++|+..++|+|+.++  |+|+++|.+++ +|++++|+++.+|..+++.  ++||+||||||. +..
T Consensus         3 ~~~~V~ill~~g~~~~e~~~~~~~l~~a~~~~~v~~vs~~~~-~V~~~~G~~v~~d~~~~~~--~~~D~livpGG~-~~~   78 (211)
T 3mgk_A            3 LSYRIDVLLFNKFETLDVFGPVEIFGNLQDDFELNFISSDGG-LVESSQKVRVETSLYTRDE--NIEKILFVPGGS-GTR   78 (211)
T ss_dssp             -CEEEEEECCTTCCHHHHHHHHHHHTTCTTTEEEEEECSSCE-EEECTTCCEEEEBCCCCCS--SSEEEEEECCST-HHH
T ss_pred             CceEEEEEEeCCcchhHHHHHHHHHHhCCCceEEEEEECCCC-eEecCCCcEEEeccchhhC--CCCCEEEECCCc-chh
Confidence            46799999999999999999999999984  99999999997 9999999999999999987  569999999997 556


Q ss_pred             cccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc----ce-ecCCcEEECCCEEEcCCh
Q 012037          364 RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN----EV-VNGTKVVVDGKVITSRGL  438 (472)
Q Consensus       364 ~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~----~~-~~~~~vv~dg~iiTa~g~  438 (472)
                      .+..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|++    .. ..++.+|+|||+|||+|+
T Consensus        79 ~~~~~~~~~~~l~~~~~~~k~iaaiC~G~~~La~aGLL~Gr~~Tth~~~~~~l~~~~p~~~~~~~~~~v~Dg~iiTs~G~  158 (211)
T 3mgk_A           79 EKVNDDNFINFIGNMVKESKYIISVCTGSALLSKAGILNGKRATTNKRSFKWVTEQNEDVLWVKEARWVKDGNIYTSSGV  158 (211)
T ss_dssp             HHTTCHHHHHHHHHHHHHCSEEEECTTHHHHHHHTTTTTTSEECCCSTTHHHHHTTCTTSEECSSCSEEEETTEEEECSH
T ss_pred             hhcCCHHHHHHHHHHHHcCCEEEEEchHHHHHHhcCCcCCCeEeeChhHHHHHHHHCCCcEEecCCeEEEeCCEEECCCH
Confidence            6778999999999999999999999999999999999999999999999999876    23 357899999999999999


Q ss_pred             hhHHHHHHHHHHHhcCHHHHHHHHhhcccccCC
Q 012037          439 ANVIDFALAIVSKFFGHARTRSVAEGLVFEYPR  471 (472)
Q Consensus       439 ~~~~d~al~li~~~~g~~~A~~va~~l~~~~~r  471 (472)
                      ++++||++++|++++|++.|+++++.|++++.|
T Consensus       159 ~a~~dlal~lv~~~~G~~~A~~va~~l~~~~~r  191 (211)
T 3mgk_A          159 SAGIDMTLGFIEDLIGKEKALEISRSIEYFWNE  191 (211)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHhcEECCcC
Confidence            999999999999999999999999999999877

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A

Probab=100.00  E-value=5.7e-38  Score=297.62  Aligned_cols=182  Identities=26%  Similarity=0.385  Sum_probs=170.9

Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHh-CCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037          286 RMPRVLIPIANGSEEIEIVTIVDILRR-AKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER  364 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~~~~~d~l~~-a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~  364 (472)
                      +++||+|+++|||+++|+.+++|+|+. ++|+|+++|.+++ +|++++|+.+.+|..++++  ++||+||||||. +...
T Consensus         4 m~~~V~ill~~gf~~~e~~~p~evl~~~~~~~v~~vs~~~~-~V~~~~G~~v~~d~~l~~~--~~~D~livpGG~-g~~~   79 (231)
T 3noq_A            4 MAVQIGFLLFPEVQQLDLTGPHDVLASLPDVQVHLIWKEPG-PVVASSGLVLQATTSFADC--PPLDVICIPGGT-GVGA   79 (231)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHTTSTTEEEEEEESSSE-EEECTTSCEEEECEETTTC--CCCSEEEECCST-THHH
T ss_pred             CcEEEEEEEeCCCcHHHHHHHHHHHHcCCCCEEEEEECCCC-cEEcCCCCEEecccChhHC--CcCCEEEECCCC-Chhh
Confidence            568999999999999999999999999 7899999999997 9999999999999999988  679999999997 4666


Q ss_pred             ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc--ceecCCcEEECCCEEEcCChhhHH
Q 012037          365 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLANVI  442 (472)
Q Consensus       365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~vv~dg~iiTa~g~~~~~  442 (472)
                      +..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.+++  ..+.++.+|+|||+|||+|+++++
T Consensus        80 ~~~~~~l~~~lr~~~~~g~~v~aiC~G~~~La~aGLL~Gr~aTthw~~~~~l~~~~~~~~~~~vV~Dg~iiTs~G~~a~~  159 (231)
T 3noq_A           80 LMEDPQALAFIRQQAARARYVTSVSTGSLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNLLTGGGITAGI  159 (231)
T ss_dssp             HTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHTTTTTTCEECCCGGGGGGTGGGTCEECCSSEEEETTEEEECSTTHHH
T ss_pred             hccCHHHHHHHHHHHhcCCEEEEECHHHHHHHHcCCCCCceeeecHhHHHHHHhCCCeeeCCcEEEeCCEEECCCHHHHH
Confidence            778999999999999999999999999999999999999999999999998875  456788999999999999999999


Q ss_pred             HHHHHHHHHhcCHHHHHHHHhhcccccCC
Q 012037          443 DFALAIVSKFFGHARTRSVAEGLVFEYPR  471 (472)
Q Consensus       443 d~al~li~~~~g~~~A~~va~~l~~~~~r  471 (472)
                      ||++++|++++|++.|+++++.|+|++.+
T Consensus       160 d~aL~li~~~~G~~~A~~va~~l~~~~~~  188 (231)
T 3noq_A          160 DFALTLAAELFDAATAQRVQLQLEYAPAP  188 (231)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHcCHHHHHHHHHhceeCCCC
Confidence            99999999999999999999999998754

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0

Probab=100.00  E-value=3.6e-38  Score=294.64  Aligned_cols=193  Identities=37%  Similarity=0.619  Sum_probs=176.5

Q ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037           83 PPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL  162 (472)
Q Consensus        83 ~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l  162 (472)
                      .++||+|+++|||+..|+..++++|+++||+|+++|++++.+|++++|..+.+|.+++++++.+||+|+||||..+...+
T Consensus         8 m~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~l   87 (208)
T 3ot1_A            8 MSKRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGAQAF   87 (208)
T ss_dssp             -CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHHHHHH
T ss_pred             cCCeEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchHHHHH
Confidence            46899999999999999999999999999999999998523999999999999999999887799999999996455667


Q ss_pred             cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCCCccccCcEEEe--CCEEeCCCCCChH
Q 012037          163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVS--GEVTTSRGPGTSF  240 (472)
Q Consensus       163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~v~D--g~iiTa~g~~~~~  240 (472)
                      ..++.+++||+++++++|+|++||+|++++|+++|||+||++||||...+.|.+.+++++++|+|  ||+|||+|+.+++
T Consensus        88 ~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~vv~d~dg~iiTs~g~~a~~  167 (208)
T 3ot1_A           88 ADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARMTCHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTAL  167 (208)
T ss_dssp             HTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTTTCSTTCCBCCCGGGGGGSCTTTBCCSSEEEEGGGTEEEECSGGGHH
T ss_pred             hhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHCCccCCCEEEECccHHHHccCCccccCcEEEeCCCCEEECCCHHHHH
Confidence            78999999999999999999999997537999999999999999999999998888888888875  5999999999999


Q ss_pred             HHHHHHHHHHhCchhHHhhhhccccccCCcchhhh
Q 012037          241 EFALCLVEQLFGESVAKEIGELLLMHNADNSLKKE  275 (472)
Q Consensus       241 dlal~li~~~~g~~~a~~va~~l~~~~~~~~~~~~  275 (472)
                      ||++++|++++|.++|++|++.|++++..+.|++.
T Consensus       168 d~al~lv~~l~G~~~a~~va~~l~~~~~~~~q~~~  202 (208)
T 3ot1_A          168 EFALAMIALLAGVELAQHVAAPMVLHPQQLTELSG  202 (208)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHGGGTCCHHHHHHHHT
T ss_pred             HHHHHHHHHhcCHHHHHHHHHhheeCCCCCCccch
Confidence            99999999999999999999999997777777653

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}

Probab=100.00  E-value=1.8e-37  Score=297.45  Aligned_cols=184  Identities=17%  Similarity=0.289  Sum_probs=170.7

Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHH-HhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037          286 RMPRVLIPIANGSEEIEIVTIVDIL-RRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER  364 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~~~~~d~l-~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~  364 (472)
                      +++||+|+++|||+++|+.+++|+| +.++|+|+++|.+++ +|++++|+.|.+|..++++. .+||+||||||..+...
T Consensus        22 m~~~I~ill~~gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~-~V~~~~G~~i~~d~~l~~~~-~~yD~liVPGG~~g~~~   99 (253)
T 3ewn_A           22 GDEQIAMLVYPGMTVMDLVGPHCMFGSLMGAKIYIVAKSLD-PVTSDAGLAIVPTATFGTCP-RDLTVLFAPGGTDGTLA   99 (253)
T ss_dssp             CCCEEEEECCTTBCHHHHHHHHHHHTTSTTCEEEEEESSSS-CEECTTSCEECCSEETTTSC-SSCSEEEECCBSHHHHH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEeCCCC-eEEcCCCCEEeCCcCHHHcC-CCCCEEEECCCccchhh
Confidence            5589999999999999999999999 567899999999998 99999999999999999885 47899999999733566


Q ss_pred             ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc--ceecCCcEEECCCEEEcCChhhHH
Q 012037          365 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLANVI  442 (472)
Q Consensus       365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~vv~dg~iiTa~g~~~~~  442 (472)
                      +..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|++  ..+.++.+|+|||+|||+|+++++
T Consensus       100 l~~~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~AGLL~Gr~aTthw~~~~~l~~~~~~~~~~~vV~Dg~iiTs~G~~a~i  179 (253)
T 3ewn_A          100 AASDAETLAFMADRGARAKYITSVCSGSLILGAAGLLKGYKATSHWSCRDALAGFGAIPTEARVVRDRNRITGAGVTAGL  179 (253)
T ss_dssp             HTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHTTCCTTCEECCCTTTGGGGGGGTCEECCSSEEEETTEEEECSTTHHH
T ss_pred             hccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHcCCCCCCEEecCHHHHHHHHhCCCeeeCCcEEEECCEEECCCHHHHH
Confidence            778999999999999999999999999999999999999999999999999975  455788999999999999999999


Q ss_pred             HHHHHHHHHhcCHHHHHHHHhhcccccCC
Q 012037          443 DFALAIVSKFFGHARTRSVAEGLVFEYPR  471 (472)
Q Consensus       443 d~al~li~~~~g~~~A~~va~~l~~~~~r  471 (472)
                      ||+++||++++|++.|+++++.|+|++.+
T Consensus       180 dlaL~lv~~l~G~~~A~~va~~l~~~~~~  208 (253)
T 3ewn_A          180 DFGLSMVAELRDQTYAECAQLMSEYDPDP  208 (253)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHcCHHHHHHHHHhcccCCCC
Confidence            99999999999999999999999998754

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}

Probab=100.00  E-value=6.4e-38  Score=288.92  Aligned_cols=184  Identities=35%  Similarity=0.559  Sum_probs=171.7

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR  163 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~  163 (472)
                      +|||+|+++|||++.|+..++++|+++||+++++|++++.++++++|..+.+|.+++++++.+||+|+||||..+...+.
T Consensus         5 ~kkv~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~~~~~   84 (190)
T 4e08_A            5 SKSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAMG   84 (190)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHHHHHH
T ss_pred             CcEEEEEECCCchHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCChHHHHhh
Confidence            58999999999999999999999999999999999997349999999999999999998877899999999954555677


Q ss_pred             CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC-Ccccc-CcEEEeCCEEeCCCCCChHH
Q 012037          164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-FWAVK-SNIHVSGEVTTSRGPGTSFE  241 (472)
Q Consensus       164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~-~~~~~-~~~v~Dg~iiTa~g~~~~~d  241 (472)
                      .++.+++||+++++++|+|+++|+| .++|+++|||+||++||||.+.+.|++ +++++ +.+|+|||+|||+|+.+++|
T Consensus        85 ~~~~~~~~l~~~~~~~k~i~aiC~G-~~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~~~v~dg~iiTs~g~~a~~d  163 (190)
T 4e08_A           85 ESSLVGDLLRSQESGGGLIAAICAA-PTVLAKHGVASGKSLTSYPSMKPQLVNNYSYVDDKTVVKDGNLITSRGPGTAYE  163 (190)
T ss_dssp             HCHHHHHHHHHHHHTTCEEEEETTT-HHHHHHTTCSTTCEECCCGGGGGGSSSSSEECSSCSEEEETTEEEECSGGGHHH
T ss_pred             hCHHHHHHHHHHHHCCCEEEEECHH-HHHHHHCCCcCCCeEEeCcCHHHHHhcCCcccCCCcEEEECCEEECCChHHHHH
Confidence            8999999999999999999999996 568999999999999999999999999 88885 88999999999999999999


Q ss_pred             HHHHHHHHHhCchhHHhhhhccccccC
Q 012037          242 FALCLVEQLFGESVAKEIGELLLMHNA  268 (472)
Q Consensus       242 lal~li~~~~g~~~a~~va~~l~~~~~  268 (472)
                      |++++|++++|+++|++|++.|+++++
T Consensus       164 ~al~li~~~~g~~~a~~va~~l~~~~~  190 (190)
T 4e08_A          164 FALKIAEELAGKEKVQEVAKGLLVAYN  190 (190)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHTCCC-
T ss_pred             HHHHHHHHhcCHHHHHHHHHhhCcccC
Confidence            999999999999999999999999763

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...

Probab=100.00  E-value=1.1e-37  Score=288.98  Aligned_cols=185  Identities=36%  Similarity=0.543  Sum_probs=169.8

Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCcccc-CCCcccEEEEcCCCcchhc
Q 012037          286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AESVYDLIILPGGVAGAER  364 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~-~~~~~D~livpGG~~~~~~  364 (472)
                      +++||+|+++|||++.|+..++|+|+++||+++++|++++.++++++|+++.++..++++ +..+||+||||||..+...
T Consensus         2 m~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~~~   81 (197)
T 2rk3_A            2 ASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQN   81 (197)
T ss_dssp             CCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHHHH
T ss_pred             CCCEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhHHH
Confidence            357999999999999999999999999999999999987547999999999999999987 7788999999999644555


Q ss_pred             ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhcc---eecCCcEEECCCEEEcCChhhH
Q 012037          365 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNE---VVNGTKVVVDGKVITSRGLANV  441 (472)
Q Consensus       365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~~---~~~~~~vv~dg~iiTa~g~~~~  441 (472)
                      +..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+++++.   .+.++.+|+|||+|||+|+.++
T Consensus        82 l~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~aGll~G~~~T~~~~~~~~l~~~~~~~~~~~~~v~Dg~iiTs~g~~a~  161 (197)
T 2rk3_A           82 LSESAAVKEILKEQENRKGLIATICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTS  161 (197)
T ss_dssp             HHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCSTTCEECCCGGGHHHHTTTSCSEECCCSEEEETTEEEECSGGGH
T ss_pred             hhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHCCCCCCCEEEeCCcHHHHHhhcCCceeCCCCEEEeCCEEECCCHHHH
Confidence            7789999999999999999999999999999999999999999999999999762   4788999999999999999999


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHhhcccccC
Q 012037          442 IDFALAIVSKFFGHARTRSVAEGLVFEYP  470 (472)
Q Consensus       442 ~d~al~li~~~~g~~~A~~va~~l~~~~~  470 (472)
                      +||++++|++++|++.|+++++.|++++-
T Consensus       162 ~d~al~li~~l~g~~~a~~va~~~~~~~~  190 (197)
T 2rk3_A          162 FEFALAIVEALNGKEVAAQVKAPLVLKDL  190 (197)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHGGGTC---
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHhhhhh
Confidence            99999999999999999999999999864

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}

Probab=100.00  E-value=5e-38  Score=293.77  Aligned_cols=183  Identities=19%  Similarity=0.219  Sum_probs=164.9

Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhCC-------CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCC
Q 012037          286 RMPRVLIPIANGSEEIEIVTIVDILRRAK-------VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGG  358 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~-------~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG  358 (472)
                      +++||+|+++|||+++|+.+++|+|+.+|       |+|+++|.+++ +|++++|+++.+|..++++  ++||+||||||
T Consensus         7 ~~~~v~ill~~g~~~~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~-~v~~~~G~~v~~d~~~~~~--~~~D~livpGg   83 (209)
T 3er6_A            7 KNLRVVALAPTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNR-PLIGRGGISVQPTAQWQSF--DFTNILIIGSI   83 (209)
T ss_dssp             CCEEEEEECCCTTSCHHHHHHHHHHHHHHHHTTCSCEEEEEECTTSS-CEEETTTEEEECSSCGGGC--SCCSEEEECCC
T ss_pred             CCeEEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC-ceecCCCeEEeCCcCcccc--CCCCEEEECCC
Confidence            56899999999999999999999999986       99999999997 9999999999999999988  78999999999


Q ss_pred             Ccchh-cccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc----cee-cCCcEEECCCE
Q 012037          359 VAGAE-RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN----EVV-NGTKVVVDGKV  432 (472)
Q Consensus       359 ~~~~~-~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~----~~~-~~~~vv~dg~i  432 (472)
                      ..... .+..++.+++||+++++++++|++||+|+++||++|||+||++|+||...+.|++    ..+ .++.+|+|||+
T Consensus        84 ~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~aGLL~gr~aTth~~~~~~l~~~~p~~~~~~~~~~v~Dg~i  163 (209)
T 3er6_A           84 GDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKAGLLQQNKAVMHSYFAHLFGELFPEIMLMTEQKALIDGNV  163 (209)
T ss_dssp             SCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHTCCSSCEECCCHHHHHHHHHHCTTSEECTTCSEEEETTE
T ss_pred             CCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHcCCCCCCeeEECHHHHHHHHHHCCCcEEecCCEEEEeCCE
Confidence            73222 2367999999999999999999999999999999999999999999999988875    233 45679999999


Q ss_pred             EEcCChhhHHHHHHHHHHHhcCHHHHHHHHhhcccccCC
Q 012037          433 ITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPR  471 (472)
Q Consensus       433 iTa~g~~~~~d~al~li~~~~g~~~A~~va~~l~~~~~r  471 (472)
                      |||+|+++++||++++|++++|++.|+++++.|++++..
T Consensus       164 iTs~G~~a~~dlal~li~~~~G~~~A~~va~~l~~~~~~  202 (209)
T 3er6_A          164 YLSSGPYSHSSVMLEIVEEYFGKHTRNLGNQFLSTIESE  202 (209)
T ss_dssp             EEECCSSCCHHHHHHHHHHHHCHHHHHHHHHHTTC----
T ss_pred             EECCcHHHHHHHHHHHHHHHhCHHHHHHHHHHhccCccc
Confidence            999999999999999999999999999999999998753

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0

Probab=100.00  E-value=1.2e-37  Score=291.18  Aligned_cols=182  Identities=31%  Similarity=0.561  Sum_probs=169.4

Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecC-CcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037          286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVER-STQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER  364 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~-~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~  364 (472)
                      +++||+|+++|||+++|+..++|+|+++||+|+++|+++ + ++++++|+++.+|..+++++..+||+||||||..+.+.
T Consensus         8 m~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~-~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~   86 (208)
T 3ot1_A            8 MSKRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKL-QVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGAQA   86 (208)
T ss_dssp             -CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSCS-EEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHHHHH
T ss_pred             cCCeEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCc-ceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchHHHH
Confidence            568999999999999999999999999999999999996 5 99999999999999999987779999999999744566


Q ss_pred             ccccHHHHHHHHHHHHcCCeEEEEchhH-HHHHHcCCCCCceeccChhhHhhhhcceecCCcEEE--CCCEEEcCChhhH
Q 012037          365 LQKSRILKKLLKEQKVAGRIYGAVCSSP-IVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVV--DGKVITSRGLANV  441 (472)
Q Consensus       365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~-~lLA~aGlL~g~~~T~~~~~~~~l~~~~~~~~~vv~--dg~iiTa~g~~~~  441 (472)
                      +..++.+++||+++++++++|++||+|+ ++|+++|||+||++|+||...+.|++..+.++++++  |||+|||+|+.++
T Consensus        87 l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~vv~d~dg~iiTs~g~~a~  166 (208)
T 3ot1_A           87 FADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARMTCHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTA  166 (208)
T ss_dssp             HHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTTTCSTTCCBCCCGGGGGGSCTTTBCCSSEEEEGGGTEEEECSGGGH
T ss_pred             HhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHCCccCCCEEEECccHHHHccCCccccCcEEEeCCCCEEECCCHHHH
Confidence            7789999999999999999999999999 999999999999999999999999887777778887  4599999999999


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHhhcccc
Q 012037          442 IDFALAIVSKFFGHARTRSVAEGLVFE  468 (472)
Q Consensus       442 ~d~al~li~~~~g~~~A~~va~~l~~~  468 (472)
                      +||++++|++++|++.|++|++.|+++
T Consensus       167 ~d~al~lv~~l~G~~~a~~va~~l~~~  193 (208)
T 3ot1_A          167 LEFALAMIALLAGVELAQHVAAPMVLH  193 (208)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHGGGTCC
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHhheeC
Confidence            999999999999999999999999984

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2

Probab=100.00  E-value=1.5e-37  Score=289.78  Aligned_cols=186  Identities=36%  Similarity=0.580  Sum_probs=174.6

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCc--ceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERST--QIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER  364 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~--~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~  364 (472)
                      ++||+|+++|||++.|+..++|+|+.+||+++++|++++.  ++.+++|+.+.++..+++++..+||+||||||..+...
T Consensus         2 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~~~   81 (205)
T 2ab0_A            2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAEC   81 (205)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHH
T ss_pred             CcEEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccHHH
Confidence            5799999999999999999999999999999999999864  79999999999999999987788999999999644566


Q ss_pred             ccccHHHHHHHHHHHHcCCeEEEEchhH-HHHHHcCCCCCceeccChhhHhhhhcceecCCcEEECCCE--EEcCChhhH
Q 012037          365 LQKSRILKKLLKEQKVAGRIYGAVCSSP-IVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKV--ITSRGLANV  441 (472)
Q Consensus       365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~-~lLA~aGlL~g~~~T~~~~~~~~l~~~~~~~~~vv~dg~i--iTa~g~~~~  441 (472)
                      +..++.+++||+++++++++|++||+|+ ++|+++|||+||++|+||...+.+++..+.++.+|+|||+  |||+|+.++
T Consensus        82 l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~aGlL~G~~~T~~~~~~~~~~~~~~~~~~vv~Dg~i~viTs~g~~s~  161 (205)
T 2ab0_A           82 FRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTA  161 (205)
T ss_dssp             HHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTTTSSSSSCBCCCGGGGGGSCTTTBCCCSEEEETTTTEEEECSGGGH
T ss_pred             hccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHCCccCCCeEEeCccHHHHccCCEEecCCEEEeCCcCeEECcChhhH
Confidence            7789999999999999999999999999 9999999999999999999999998877778899999999  999999999


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHhhcccccCCC
Q 012037          442 IDFALAIVSKFFGHARTRSVAEGLVFEYPRS  472 (472)
Q Consensus       442 ~d~al~li~~~~g~~~A~~va~~l~~~~~r~  472 (472)
                      +||++++|+++.|.+.|+++++.|++++.|+
T Consensus       162 ~d~al~li~~l~g~~~a~~va~~l~~~~~r~  192 (205)
T 2ab0_A          162 IDFGLKIIDLLVGREKAHEVASQLVMAAGIY  192 (205)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTTTTCCTTSC
T ss_pred             HHHHHHHHHHhcChHHHHHHHHhcccCCCCC
Confidence            9999999999999999999999999998874

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A

Probab=100.00  E-value=3.5e-37  Score=284.64  Aligned_cols=182  Identities=26%  Similarity=0.436  Sum_probs=164.4

Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCC--cceecCCCcEEeecCCccccCC-----CcccEEEEcCC
Q 012037          286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERS--TQIVASQGVKIIADKSISDAAE-----SVYDLIILPGG  358 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~--~~v~s~~G~~v~~d~~l~~~~~-----~~~D~livpGG  358 (472)
                      +|+||+|+++|||+++|+..|+++|+++|+++++++..++  ..+++++|+++.+|..++++..     ++||+|+||||
T Consensus         3 ~M~kV~ill~dGfe~~E~~~p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPGG   82 (194)
T 4gdh_A            3 HMVKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGG   82 (194)
T ss_dssp             --CCEEEEEETTCCHHHHHHHHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECCC
T ss_pred             CCCEEEEEECCCcCHHHHHHHHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECCC
Confidence            6899999999999999999999999999999999998643  3689999999999999988753     46999999999


Q ss_pred             CcchhcccccHHHHHHHHHHHHc-CCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc--ceecCCcEEECCCEEEc
Q 012037          359 VAGAERLQKSRILKKLLKEQKVA-GRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITS  435 (472)
Q Consensus       359 ~~~~~~~~~~~~l~~~L~~~~~~-g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~vv~dg~iiTa  435 (472)
                      ..+.+.+..++.+++||++++++ ++++++||+|+ +|+++|+|+||++|+||...+++++  ..+.++++|+|||+|||
T Consensus        83 ~~~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~-~l~~aglL~gr~~T~~~~~~~~l~~~g~~~~d~~vV~Dg~iiTs  161 (194)
T 4gdh_A           83 GLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGT-LTAKTSGLPNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITS  161 (194)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGG-HHHHHTTCCCSEECCCGGGHHHHHHTTCEECCSSEEEETTEEEE
T ss_pred             chhHhHhhhCHHHHHHHHHhhhcCCceEEeecccc-cchhhceecCCceEecCcHHHHHHhcCCeeecceEEEcCCEEEC
Confidence            76678888999999999999865 79999999998 5677889999999999999999986  57789999999999999


Q ss_pred             CChhhHHHHHHHHHHHhcCHHHHHHHHhhcccc
Q 012037          436 RGLANVIDFALAIVSKFFGHARTRSVAEGLVFE  468 (472)
Q Consensus       436 ~g~~~~~d~al~li~~~~g~~~A~~va~~l~~~  468 (472)
                      +|+++++||+++||++++|++.|++|++.|+|.
T Consensus       162 ~g~~~~~d~al~lve~l~G~~~a~~va~~l~~P  194 (194)
T 4gdh_A          162 QGPGTAMLFGLKLLEQVASKDKYNAVYKSLSMP  194 (194)
T ss_dssp             CSGGGHHHHHHHHHHHHSCHHHHHHHHHHTTCC
T ss_pred             CCHhHHHHHHHHHHHHHcCHHHHHHHHhhccCC
Confidence            999999999999999999999999999999873

>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}

Probab=100.00  E-value=1.7e-36  Score=275.06  Aligned_cols=167  Identities=18%  Similarity=0.198  Sum_probs=157.5

Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037          286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  365 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~  365 (472)
                      .+++|+|++.+||++.|+..|+++|+++||+|+++|++++ ++++++|+++.+|..+++++..+||+|+||||+ ++..+
T Consensus         7 t~~~v~il~~~gFe~~E~~~p~~~l~~ag~~V~~~s~~~~-~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~-g~~~l   84 (177)
T 4hcj_A            7 TNNILYVMSGQNFQDEEYFESKKIFESAGYKTKVSSTFIG-TAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGI-GCITL   84 (177)
T ss_dssp             CCEEEEECCSEEECHHHHHHHHHHHHHTTCEEEEEESSSE-EEEETTSCEEEECEEGGGCCGGGCSEEEECCSG-GGGGG
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHHHHCCCEEEEEECCCC-eEeeCCCCEEecCccHHHCCHhHCCEEEECCCc-cHHHH
Confidence            3456788889999999999999999999999999999998 999999999999999999988999999999997 56778


Q ss_pred             cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc--ceecCCcEEECCCEEEcCChhhHHH
Q 012037          366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLANVID  443 (472)
Q Consensus       366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~vv~dg~iiTa~g~~~~~d  443 (472)
                      ..++.+++||+++++++++|++||+|+++|+++|||+||++|+||..++++++  ..+.++++|+|||+|||+|+.+++|
T Consensus        85 ~~~~~~~~~l~~~~~~~k~iaaIC~g~~~La~aGlL~gr~~T~~~~~~~~l~~~ga~~~~~~vV~Dg~liTs~g~~~~~~  164 (177)
T 4hcj_A           85 WDDWRTQGLAKLFLDNQKIVAGIGSGVVIMANAKILEEINVTCLSADESHVRHGNANIMSENVVVSGNIVTANGPTSSKD  164 (177)
T ss_dssp             TTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECSSSEEEETTEEEECSGGGHHH
T ss_pred             hhCHHHHHHHHHHHHhCCEEEEecccHHHHHHCCCCCCCEEEEeCCHHHHHHhCCCEEecCCEEEECCEEECCCHHHHHH
Confidence            89999999999999999999999999999999999999999999999999986  5788999999999999999999999


Q ss_pred             HHHHHHHHhcC
Q 012037          444 FALAIVSKFFG  454 (472)
Q Consensus       444 ~al~li~~~~g  454 (472)
                      |++++|+.+-+
T Consensus       165 ~a~~lve~L~s  175 (177)
T 4hcj_A          165 FANAVVGVLNS  175 (177)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999998854

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}

Probab=100.00  E-value=5.1e-37  Score=287.29  Aligned_cols=192  Identities=17%  Similarity=0.211  Sum_probs=171.8

Q ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHhC--CCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc
Q 012037           83 PPKKVLVPVGFGTEEMEAVIIVDVLRRA--GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV  160 (472)
Q Consensus        83 ~~~kV~ill~~g~~~~e~~~~~~~l~~a--g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~  160 (472)
                      +++||+||++|||+..|+..++++|+++  +|+|+++|++++ +|++++|+.+.+|..+++.+  .||+|+||||. +..
T Consensus         3 ~~~~V~ill~~g~~~~e~~~~~~~l~~a~~~~~v~~vs~~~~-~V~~~~G~~v~~d~~~~~~~--~~D~livpGG~-~~~   78 (211)
T 3mgk_A            3 LSYRIDVLLFNKFETLDVFGPVEIFGNLQDDFELNFISSDGG-LVESSQKVRVETSLYTRDEN--IEKILFVPGGS-GTR   78 (211)
T ss_dssp             -CEEEEEECCTTCCHHHHHHHHHHHTTCTTTEEEEEECSSCE-EEECTTCCEEEEBCCCCCSS--SEEEEEECCST-HHH
T ss_pred             CceEEEEEEeCCcchhHHHHHHHHHHhCCCceEEEEEECCCC-eEecCCCcEEEeccchhhCC--CCCEEEECCCc-chh
Confidence            4789999999999999999999999998  599999999986 99999999999999999876  69999999994 555


Q ss_pred             cccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC----Cccc-cCcEEEeCCEEeCCC
Q 012037          161 RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT----FWAV-KSNIHVSGEVTTSRG  235 (472)
Q Consensus       161 ~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~----~~~~-~~~~v~Dg~iiTa~g  235 (472)
                      .+..++.+++||+++++++|+|++||+| .++|+++|||+||++||||...+.|++    ..+. ++.+|+|||+|||+|
T Consensus        79 ~~~~~~~~~~~l~~~~~~~k~iaaiC~G-~~~La~aGLL~Gr~~Tth~~~~~~l~~~~p~~~~~~~~~~v~Dg~iiTs~G  157 (211)
T 3mgk_A           79 EKVNDDNFINFIGNMVKESKYIISVCTG-SALLSKAGILNGKRATTNKRSFKWVTEQNEDVLWVKEARWVKDGNIYTSSG  157 (211)
T ss_dssp             HHTTCHHHHHHHHHHHHHCSEEEECTTH-HHHHHHTTTTTTSEECCCSTTHHHHHTTCTTSEECSSCSEEEETTEEEECS
T ss_pred             hhcCCHHHHHHHHHHHHcCCEEEEEchH-HHHHHhcCCcCCCeEeeChhHHHHHHHHCCCcEEecCCeEEEeCCEEECCC
Confidence            6778999999999999999999999996 679999999999999999999998877    3454 578999999999999


Q ss_pred             CCChHHHHHHHHHHHhCchhHHhhhhccccccCC---cchhhhcccc
Q 012037          236 PGTSFEFALCLVEQLFGESVAKEIGELLLMHNAD---NSLKKEEFNE  279 (472)
Q Consensus       236 ~~~~~dlal~li~~~~g~~~a~~va~~l~~~~~~---~~~~~~~~n~  279 (472)
                      +.+++||+++||++++|+++|++|++.|++++.|   |.||....++
T Consensus       158 ~~a~~dlal~lv~~~~G~~~A~~va~~l~~~~~r~~~q~~f~~~~~~  204 (211)
T 3mgk_A          158 VSAGIDMTLGFIEDLIGKEKALEISRSIEYFWNEDSNYDPFSKIYGE  204 (211)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHTCCCCCCCSCCGGGTTC--
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHhcEECCcCCCCCchhHHHHhc
Confidence            9999999999999999999999999999998754   4556655544

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2

Probab=100.00  E-value=1e-36  Score=284.16  Aligned_cols=190  Identities=33%  Similarity=0.531  Sum_probs=175.6

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCc--ceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQL--EVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR  161 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~--~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~  161 (472)
                      ++||+|+++|||+..|+..++++|+++||++++++++++.  ++++++|..+.+|..+++.++.+||+||||||..+...
T Consensus         2 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~~~   81 (205)
T 2ab0_A            2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAEC   81 (205)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHH
T ss_pred             CcEEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccHHH
Confidence            5799999999999999999999999999999999999754  89999999999999998887678999999999645566


Q ss_pred             ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCCCccccCcEEEeCCE--EeCCCCCCh
Q 012037          162 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEV--TTSRGPGTS  239 (472)
Q Consensus       162 l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~v~Dg~i--iTa~g~~~~  239 (472)
                      +..++.+.+||+++++++|+|++||+|++++|+++|||+||++||||.+.+.+++..+.++++|+|||+  |||+|+.++
T Consensus        82 l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~aGlL~G~~~T~~~~~~~~~~~~~~~~~~vv~Dg~i~viTs~g~~s~  161 (205)
T 2ab0_A           82 FRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTA  161 (205)
T ss_dssp             HHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTTTSSSSSCBCCCGGGGGGSCTTTBCCCSEEEETTTTEEEECSGGGH
T ss_pred             hccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHCCccCCCeEEeCccHHHHccCCEEecCCEEEeCCcCeEECcChhhH
Confidence            778999999999999999999999997537999999999999999999999999888888899999999  999999999


Q ss_pred             HHHHHHHHHHHhCchhHHhhhhccccccCCcchh
Q 012037          240 FEFALCLVEQLFGESVAKEIGELLLMHNADNSLK  273 (472)
Q Consensus       240 ~dlal~li~~~~g~~~a~~va~~l~~~~~~~~~~  273 (472)
                      +||++++|+++.|.+.|+++++.|++++.|..+.
T Consensus       162 ~d~al~li~~l~g~~~a~~va~~l~~~~~r~~~~  195 (205)
T 2ab0_A          162 IDFGLKIIDLLVGREKAHEVASQLVMAAGIYNYY  195 (205)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTTTTCCTTSCCCC
T ss_pred             HHHHHHHHHHhcChHHHHHHHHhcccCCCCCchH
Confidence            9999999999999999999999999998776553

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}

Probab=100.00  E-value=3e-37  Score=286.93  Aligned_cols=185  Identities=22%  Similarity=0.265  Sum_probs=161.3

Q ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHhCC------CEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCC
Q 012037           82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAG------AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGG  155 (472)
Q Consensus        82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag------~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG  155 (472)
                      .+++||+||++|||++.|+..++|+|+.++      |+|+++|.+++ +|++++|+++.+| ++++....+||+||||||
T Consensus         3 ~~~~~v~ill~~g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~-~v~~~~G~~i~~d-~l~~~~~~~~D~livpGG   80 (202)
T 3gra_A            3 LAPYRVDFILLEHFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGD-RVLSDLGLELVAT-ELSAAALKELDLLVVCGG   80 (202)
T ss_dssp             --CEEEEEEECTTBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSS-EEEBTTSCEEECE-ECCSGGGTTCSEEEEECC
T ss_pred             CCcEEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC-ceEcCCCCEEECC-CcccccCCCCCEEEEeCC
Confidence            458899999999999999999999999986      99999999976 9999999999999 999865568999999999


Q ss_pred             ccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC----CccccCcEEEeCCEE
Q 012037          156 MPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT----FWAVKSNIHVSGEVT  231 (472)
Q Consensus       156 ~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~----~~~~~~~~v~Dg~ii  231 (472)
                      .. .... . +.+++||+++++++|+|++||+| .++|+++|||+||++||||.+.+.|++    ..+.++.+|+|||+|
T Consensus        81 ~~-~~~~-~-~~l~~~l~~~~~~g~~iaaIC~G-~~~La~aGLL~gr~aTth~~~~~~l~~~~p~~~~~~~~~v~dg~ii  156 (202)
T 3gra_A           81 LR-TPLK-Y-PELDRLLNDCAAHGMALGGLWNG-AWFLGRAGVLDDYGCSIHPEQRASLSERSPQTRITPASFTLDRDRL  156 (202)
T ss_dssp             TT-CCSC-C-TTHHHHHHHHHHHTCEEEEETTH-HHHHHHHTCCTTEEECCCGGGHHHHHHHCTTEEECSSSEEEETTEE
T ss_pred             Cc-hhhc-c-HHHHHHHHHHHhhCCEEEEECHH-HHHHHHcCCcCCCcEEeChhHHHHHHHHCCCCEecCCeEEEeCCEE
Confidence            53 3333 3 89999999999999999999996 679999999999999999999888865    456778999999999


Q ss_pred             eCCCCCChHHHHHHHHHHHhCchhHHhhhhccccccCCcch
Q 012037          232 TSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSL  272 (472)
Q Consensus       232 Ta~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~~~~~~~  272 (472)
                      ||+|+.+++||+++||++++|++.|+++++.|++++.+..+
T Consensus       157 Ts~G~~a~~dlal~li~~~~G~~~A~~va~~l~~~~~~~~~  197 (202)
T 3gra_A          157 SAASPNGAMELMLGLVRRLYGDGLAEGVEEILSFSGAREGH  197 (202)
T ss_dssp             EESSHHHHHHHHHHHHHHHHCHHHHHHHHHHHC--------
T ss_pred             ECCCHHHHHHHHHHHHHHHhCHHHHHHHHHHhCcCcccccc
Confidence            99999999999999999999999999999999999887655

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}

Probab=100.00  E-value=5.9e-36  Score=286.85  Aligned_cols=184  Identities=16%  Similarity=0.240  Sum_probs=169.7

Q ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHH-HhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037           83 PPKKVLVPVGFGTEEMEAVIIVDVL-RRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR  161 (472)
Q Consensus        83 ~~~kV~ill~~g~~~~e~~~~~~~l-~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~  161 (472)
                      .++||+||++|||+..|+..++++| +..+|+|+++|++++ +|++++|+.+.+|.++++++. .||+||||||..+...
T Consensus        22 m~~~I~ill~~gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~-~V~~~~G~~i~~d~~l~~~~~-~yD~liVPGG~~g~~~   99 (253)
T 3ewn_A           22 GDEQIAMLVYPGMTVMDLVGPHCMFGSLMGAKIYIVAKSLD-PVTSDAGLAIVPTATFGTCPR-DLTVLFAPGGTDGTLA   99 (253)
T ss_dssp             CCCEEEEECCTTBCHHHHHHHHHHHTTSTTCEEEEEESSSS-CEECTTSCEECCSEETTTSCS-SCSEEEECCBSHHHHH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEeCCCC-eEEcCCCCEEeCCcCHHHcCC-CCCEEEECCCccchhh
Confidence            3589999999999999999999999 567999999999987 999999999999999998874 7999999999525566


Q ss_pred             ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC--CccccCcEEEeCCEEeCCCCCCh
Q 012037          162 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRGPGTS  239 (472)
Q Consensus       162 l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~~v~Dg~iiTa~g~~~~  239 (472)
                      +..++.+++||+++++++|+|++||+| .++|+++|||+||++||||.+.+.|++  ..++++++|+|||+|||+|+.++
T Consensus       100 l~~~~~l~~~Lr~~~~~gk~IaaICtG-~~lLa~AGLL~Gr~aTthw~~~~~l~~~~~~~~~~~vV~Dg~iiTs~G~~a~  178 (253)
T 3ewn_A          100 AASDAETLAFMADRGARAKYITSVCSG-SLILGAAGLLKGYKATSHWSCRDALAGFGAIPTEARVVRDRNRITGAGVTAG  178 (253)
T ss_dssp             HTTCHHHHHHHHHHHTTCSEEEEETTH-HHHHHHTTCCTTCEECCCTTTGGGGGGGTCEECCSSEEEETTEEEECSTTHH
T ss_pred             hccCHHHHHHHHHHHHcCCEEEEEChH-HHHHHHcCCCCCCEEecCHHHHHHHHhCCCeeeCCcEEEECCEEECCCHHHH
Confidence            778999999999999999999999996 679999999999999999999999987  44678899999999999999999


Q ss_pred             HHHHHHHHHHHhCchhHHhhhhccccccCC
Q 012037          240 FEFALCLVEQLFGESVAKEIGELLLMHNAD  269 (472)
Q Consensus       240 ~dlal~li~~~~g~~~a~~va~~l~~~~~~  269 (472)
                      +||+++||++++|.++|++|++.|++++.+
T Consensus       179 idlaL~lv~~l~G~~~A~~va~~l~~~~~~  208 (253)
T 3ewn_A          179 LDFGLSMVAELRDQTYAECAQLMSEYDPDP  208 (253)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHhcccCCCC
Confidence            999999999999999999999999998644

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...

Probab=100.00  E-value=2.8e-36  Score=279.52  Aligned_cols=185  Identities=36%  Similarity=0.557  Sum_probs=168.1

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCC-CCCcccEEEEcCCccccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNC-SHQVFDLIALPGGMPGSVRL  162 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~-~~~~~D~vivpGG~~~~~~l  162 (472)
                      ++||+|+++|||+..|+..++++|+++||++++++++++.++++++|..+.+|.++++. ++.+||+|+||||..+...+
T Consensus         3 ~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~~~l   82 (197)
T 2rk3_A            3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNL   82 (197)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHHHHH
T ss_pred             CCEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhHHHh
Confidence            57999999999999999999999999999999999987658999999999999999887 55689999999995445557


Q ss_pred             cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC-C--ccccCcEEEeCCEEeCCCCCCh
Q 012037          163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-F--WAVKSNIHVSGEVTTSRGPGTS  239 (472)
Q Consensus       163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~-~--~~~~~~~v~Dg~iiTa~g~~~~  239 (472)
                      ..++.+++||+++++++|+|++||+| .++|+++|+|+||++||||...+.|++ +  ++.++.+|+|||+|||+|+.++
T Consensus        83 ~~~~~~~~~l~~~~~~gk~i~aiC~G-~~~La~aGll~G~~~T~~~~~~~~l~~~~~~~~~~~~~v~Dg~iiTs~g~~a~  161 (197)
T 2rk3_A           83 SESAAVKEILKEQENRKGLIATICAG-PTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTS  161 (197)
T ss_dssp             HHCHHHHHHHHHHHHTTCEEEEETTT-HHHHHHTTCSTTCEECCCGGGHHHHTTTSCSEECCCSEEEETTEEEECSGGGH
T ss_pred             hhCHHHHHHHHHHHHcCCEEEEECHH-HHHHHHCCCCCCCEEEeCCcHHHHHhhcCCceeCCCCEEEeCCEEECCCHHHH
Confidence            78999999999999999999999996 569999999999999999999999987 4  4778899999999999999999


Q ss_pred             HHHHHHHHHHHhCchhHHhhhhccccccCC
Q 012037          240 FEFALCLVEQLFGESVAKEIGELLLMHNAD  269 (472)
Q Consensus       240 ~dlal~li~~~~g~~~a~~va~~l~~~~~~  269 (472)
                      +||++++|+++.|.+.|+++++.|++++-.
T Consensus       162 ~d~al~li~~l~g~~~a~~va~~~~~~~~~  191 (197)
T 2rk3_A          162 FEFALAIVEALNGKEVAAQVKAPLVLKDLE  191 (197)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHGGGTC----
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHhhhhhh
Confidence            999999999999999999999999987644

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A

Probab=100.00  E-value=5.1e-36  Score=284.18  Aligned_cols=181  Identities=27%  Similarity=0.333  Sum_probs=168.7

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHh-CCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRR-AGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL  162 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~-ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l  162 (472)
                      ++||+||++|||+..|+..++++|++ .+|+|+++|++++ +|++++|+.+.+|.++++++  +||+|+||||. +...+
T Consensus         5 ~~~V~ill~~gf~~~e~~~p~evl~~~~~~~v~~vs~~~~-~V~~~~G~~v~~d~~l~~~~--~~D~livpGG~-g~~~~   80 (231)
T 3noq_A            5 AVQIGFLLFPEVQQLDLTGPHDVLASLPDVQVHLIWKEPG-PVVASSGLVLQATTSFADCP--PLDVICIPGGT-GVGAL   80 (231)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHTTSTTEEEEEEESSSE-EEECTTSCEEEECEETTTCC--CCSEEEECCST-THHHH
T ss_pred             cEEEEEEEeCCCcHHHHHHHHHHHHcCCCCEEEEEECCCC-cEEcCCCCEEecccChhHCC--cCCEEEECCCC-Chhhh
Confidence            58999999999999999999999999 7999999999986 99999999999999999886  79999999994 56667


Q ss_pred             cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC--CccccCcEEEeCCEEeCCCCCChH
Q 012037          163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRGPGTSF  240 (472)
Q Consensus       163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~~v~Dg~iiTa~g~~~~~  240 (472)
                      ..++.+++||+++++++|+|++||+| .++|+++|||+||++||||.+.+.|++  ..++++++|+|||+|||+|+.+++
T Consensus        81 ~~~~~l~~~lr~~~~~g~~v~aiC~G-~~~La~aGLL~Gr~aTthw~~~~~l~~~~~~~~~~~vV~Dg~iiTs~G~~a~~  159 (231)
T 3noq_A           81 MEDPQALAFIRQQAARARYVTSVSTG-SLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNLLTGGGITAGI  159 (231)
T ss_dssp             TTCHHHHHHHHHHHTTCSEEEEETTH-HHHHHHTTTTTTCEECCCGGGGGGTGGGTCEECCSSEEEETTEEEECSTTHHH
T ss_pred             ccCHHHHHHHHHHHhcCCEEEEECHH-HHHHHHcCCCCCceeeecHhHHHHHHhCCCeeeCCcEEEeCCEEECCCHHHHH
Confidence            78999999999999999999999996 679999999999999999999999976  446788899999999999999999


Q ss_pred             HHHHHHHHHHhCchhHHhhhhccccccCC
Q 012037          241 EFALCLVEQLFGESVAKEIGELLLMHNAD  269 (472)
Q Consensus       241 dlal~li~~~~g~~~a~~va~~l~~~~~~  269 (472)
                      ||+++||++++|.+.|++|++.|++++.+
T Consensus       160 d~aL~li~~~~G~~~A~~va~~l~~~~~~  188 (231)
T 3noq_A          160 DFALTLAAELFDAATAQRVQLQLEYAPAP  188 (231)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHcCHHHHHHHHHhceeCCCC
Confidence            99999999999999999999999998643

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A

Probab=100.00  E-value=1.8e-36  Score=279.84  Aligned_cols=183  Identities=25%  Similarity=0.338  Sum_probs=165.0

Q ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCC--CcceeccCCceeeeCCCcCCCCC-----CcccEEEEcC
Q 012037           82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEP--QLEVEASSGTRLVADTSISNCSH-----QVFDLIALPG  154 (472)
Q Consensus        82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~--g~~v~~~~G~~v~~d~~~~~~~~-----~~~D~vivpG  154 (472)
                      ..|+||+|+++|||++.|+..|+++|+++|+++++++...  +..+++++|.++.+|..+++++.     .+||+|+|||
T Consensus         2 s~M~kV~ill~dGfe~~E~~~p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPG   81 (194)
T 4gdh_A            2 SHMVKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPG   81 (194)
T ss_dssp             ---CCEEEEEETTCCHHHHHHHHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECC
T ss_pred             CCCCEEEEEECCCcCHHHHHHHHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECC
Confidence            4689999999999999999999999999999999998754  23689999999999999988764     3599999999


Q ss_pred             CccccccccCChHHHHHHHHHHhc-CCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC--CccccCcEEEeCCEE
Q 012037          155 GMPGSVRLRDCEILKKITSKQAEE-KRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVT  231 (472)
Q Consensus       155 G~~~~~~l~~~~~~~~~l~~~~~~-~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~~v~Dg~ii  231 (472)
                      |..+...+.+++.+.+||++++++ +|+|+++|+| . +|+++|+|+||++||||.+.+.|++  +.|+++++|+|||+|
T Consensus        82 G~~~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g-~-~l~~aglL~gr~~T~~~~~~~~l~~~g~~~~d~~vV~Dg~ii  159 (194)
T 4gdh_A           82 GGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAG-T-LTAKTSGLPNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLI  159 (194)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGG-G-HHHHHTTCCCSEECCCGGGHHHHHHTTCEECCSSEEEETTEE
T ss_pred             CchhHhHhhhCHHHHHHHHHhhhcCCceEEeeccc-c-cchhhceecCCceEecCcHHHHHHhcCCeeecceEEEcCCEE
Confidence            976778888999999999999865 7999999996 4 5788899999999999999999987  688999999999999


Q ss_pred             eCCCCCChHHHHHHHHHHHhCchhHHhhhhccccc
Q 012037          232 TSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMH  266 (472)
Q Consensus       232 Ta~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~  266 (472)
                      ||+|+.+++||+++||++++|++.|++|++.|+++
T Consensus       160 Ts~g~~~~~d~al~lve~l~G~~~a~~va~~l~~P  194 (194)
T 4gdh_A          160 TSQGPGTAMLFGLKLLEQVASKDKYNAVYKSLSMP  194 (194)
T ss_dssp             EECSGGGHHHHHHHHHHHHSCHHHHHHHHHHTTCC
T ss_pred             ECCCHhHHHHHHHHHHHHHcCHHHHHHHHhhccCC
Confidence            99999999999999999999999999999999874

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}

Probab=100.00  E-value=4.9e-36  Score=280.29  Aligned_cols=186  Identities=13%  Similarity=0.110  Sum_probs=163.0

Q ss_pred             CCCCcEEEEEeCCCCcHHHHHHHHHHHHhCC-------CEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEc
Q 012037           81 AVPPKKVLVPVGFGTEEMEAVIIVDVLRRAG-------AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALP  153 (472)
Q Consensus        81 ~~~~~kV~ill~~g~~~~e~~~~~~~l~~ag-------~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivp  153 (472)
                      +.+++||+||++|||++.|+..++|+|+.++       |+|+++|.+++ +|++++|+++.+|..+++.+  +||+||||
T Consensus         5 ~~~~~~v~ill~~g~~~~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~-~v~~~~G~~v~~d~~~~~~~--~~D~livp   81 (209)
T 3er6_A            5 NKKNLRVVALAPTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNR-PLIGRGGISVQPTAQWQSFD--FTNILIIG   81 (209)
T ss_dssp             --CCEEEEEECCCTTSCHHHHHHHHHHHHHHHHTTCSCEEEEEECTTSS-CEEETTTEEEECSSCGGGCS--CCSEEEEC
T ss_pred             CCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC-ceecCCCeEEeCCcCccccC--CCCEEEEC
Confidence            3458899999999999999999999999874       99999999976 99999999999999999875  79999999


Q ss_pred             CCccccc-cccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC----CccccC-cEEEe
Q 012037          154 GGMPGSV-RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT----FWAVKS-NIHVS  227 (472)
Q Consensus       154 GG~~~~~-~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~----~~~~~~-~~v~D  227 (472)
                      ||..... .+..++.+++||+++++++++|++||+| .++|+++|||+||++||||.+.+.|++    .++.++ .+|+|
T Consensus        82 Gg~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G-~~~La~aGLL~gr~aTth~~~~~~l~~~~p~~~~~~~~~~v~D  160 (209)
T 3er6_A           82 SIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTG-IFVVAKAGLLQQNKAVMHSYFAHLFGELFPEIMLMTEQKALID  160 (209)
T ss_dssp             CCSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTH-HHHHHHHTCCSSCEECCCHHHHHHHHHHCTTSEECTTCSEEEE
T ss_pred             CCCCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHH-HHHHHHcCCCCCCeeEECHHHHHHHHHHCCCcEEecCCEEEEe
Confidence            9952222 2467999999999999999999999996 679999999999999999998888865    445554 69999


Q ss_pred             CCEEeCCCCCChHHHHHHHHHHHhCchhHHhhhhccccccCCc
Q 012037          228 GEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADN  270 (472)
Q Consensus       228 g~iiTa~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~~~~~  270 (472)
                      ||+|||+|+.+++||+++||++++|+++|+++++.|++++...
T Consensus       161 g~iiTs~G~~a~~dlal~li~~~~G~~~A~~va~~l~~~~~~~  203 (209)
T 3er6_A          161 GNVYLSSGPYSHSSVMLEIVEEYFGKHTRNLGNQFLSTIESEG  203 (209)
T ss_dssp             TTEEEECCSSCCHHHHHHHHHHHHCHHHHHHHHHHTTC-----
T ss_pred             CCEEECCcHHHHHHHHHHHHHHHhCHHHHHHHHHHhccCcccc
Confidence            9999999999999999999999999999999999999987554

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}

Probab=100.00  E-value=8.8e-36  Score=282.74  Aligned_cols=180  Identities=20%  Similarity=0.363  Sum_probs=165.0

Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhCC--CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh
Q 012037          286 RMPRVLIPIANGSEEIEIVTIVDILRRAK--VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE  363 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~--~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~  363 (472)
                      +++||+|+++|||+++|+..++|+|+.++  |+++++| +++ +++++.|+.+.+|..+++.  .+||+||||||..+..
T Consensus        19 ~~~kV~ill~dGf~~~e~~~p~dvl~~~~~~~~v~~vs-~~~-~V~ss~G~~v~~d~~l~~~--~~~D~liVPGG~~g~~   94 (236)
T 3bhn_A           19 GMYKVGIVLFDDFTDVDFFLMNDLLGRTSDSWTVRILG-TKP-EHHSQLGMTVKTDGHVSEV--KEQDVVLITSGYRGIP   94 (236)
T ss_dssp             -CEEEEEECCTTBCHHHHHHHHHHHTTCSSSEEEEEEE-SSS-EEEBTTCCEEECSEEGGGG--GGCSEEEECCCTTHHH
T ss_pred             CCCEEEEEeCCCChHHHHHHHHHHHHcCCCCEEEEEEE-CCC-cEEecCCcEEecCcccccc--cCCCEEEEcCCccCHh
Confidence            46799999999999999999999999976  8999999 887 9999999999999999885  7899999999942455


Q ss_pred             cccccHHHHHHHHHHHHcCC-eEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc--ceecCCcEEECCCEEEcCChhh
Q 012037          364 RLQKSRILKKLLKEQKVAGR-IYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLAN  440 (472)
Q Consensus       364 ~~~~~~~l~~~L~~~~~~g~-~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~vv~dg~iiTa~g~~~  440 (472)
                      .+..++.+++||  ++++++ +|++||+|+++|+++|||+||++|+||...+.|++  ..+.++.+|+|||+|||+|+.+
T Consensus        95 ~l~~~~~l~~~L--~~~~~~~~IaaIC~G~~lLa~AGLL~Gr~aTth~~~~~~l~~~~p~~~~~~vV~Dg~iiTs~G~~a  172 (236)
T 3bhn_A           95 AALQDENFMSAL--KLDPSRQLIGSICAGSFVLHELGLLKGKKLTTNPDAKAVLQGMGGDVQDLPLVIEGNIATAGGCLS  172 (236)
T ss_dssp             HHHTCHHHHHHC--CCCTTTCEEEEETTHHHHHHHTTTTTTCEECCCGGGHHHHHHTTCEECSSSEEEETTEEEECSGGG
T ss_pred             hhccCHHHHHHH--HhCCCCCEEEEEcHHHHHHHHcCCCCCCEEECCHHHHHHHHHhCCccCCCcEEEeCCEEECCCHHH
Confidence            577899999999  566666 99999999999999999999999999999999986  4668999999999999999999


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHhhcccccCC
Q 012037          441 VIDFALAIVSKFFGHARTRSVAEGLVFEYPR  471 (472)
Q Consensus       441 ~~d~al~li~~~~g~~~A~~va~~l~~~~~r  471 (472)
                      ++||++++|++++|++.|+++++.|++++.|
T Consensus       173 ~~dlal~lIe~l~G~~~A~~va~~l~~~~~~  203 (236)
T 3bhn_A          173 LLYLVGWLAERLFDSVKRKQIQNQLIPAGQM  203 (236)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHTTTSCTTCH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHhcccCCCC
Confidence            9999999999999999999999999998765

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}

Probab=100.00  E-value=8.2e-36  Score=279.44  Aligned_cols=180  Identities=19%  Similarity=0.292  Sum_probs=164.8

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHH--------hCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCC
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILR--------RAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGG  358 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~--------~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG  358 (472)
                      |+||+|+++|||+++|+..++|+|+        +++|+|+++|.+++ +|++++|+++.+|..+++++..+||+||||||
T Consensus         5 m~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~-~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG   83 (212)
T 3efe_A            5 TKKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKE-MITTMGGLRIKPDISLDECTLESKDLLILPGG   83 (212)
T ss_dssp             CCCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSC-CEECTTCCEECCSEEGGGCCCCTTCEEEECCC
T ss_pred             ccEEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCC-eEEcCCCCEEecCcCHHHCCccCCCEEEECCC
Confidence            6899999999999999999999999        67899999999998 99999999999999999987679999999999


Q ss_pred             CcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccCh-hhHhhhhc-----ceecCCcEEECCCE
Q 012037          359 VAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHP-SVIGKLTN-----EVVNGTKVVVDGKV  432 (472)
Q Consensus       359 ~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~-~~~~~l~~-----~~~~~~~vv~dg~i  432 (472)
                      .. . .+..++.+++||+++++++++|++||+|+++|+++|||+||++|+|| ...+.+++     .++.++.+|+|||+
T Consensus        84 ~~-~-~~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~aGlL~Gr~~Tt~~~~~~~~l~~~~p~~~~~~~~~~V~Dg~i  161 (212)
T 3efe_A           84 TT-W-SEEIHQPILERIGQALKIGTIVAAICGATDALANMGYLDTRKHTSNNLEYTKMVCPNYKGEKFYELGPAVSDANL  161 (212)
T ss_dssp             SC-T-TSGGGHHHHHHHHHHHHHTCEEEEETHHHHHHHHTTTTSSSCBCCSCHHHHHHHCTTCCCTTTBCCCSEEEETTE
T ss_pred             Cc-c-ccccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHHcCCCCCCeeecCCHHHHHHHHhhCCCccccCCCcEEEECCE
Confidence            73 3 35688999999999999999999999999999999999999999996 77677754     35788999999999


Q ss_pred             EEcCChhhHHHHHHHHHHHhcCHHHHHHHHhhcccccCC
Q 012037          433 ITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPR  471 (472)
Q Consensus       433 iTa~g~~~~~d~al~li~~~~g~~~A~~va~~l~~~~~r  471 (472)
                      |||+|+. ++||++++|+++.|. .|.++++.+++.+.+
T Consensus       162 iTs~G~~-~~d~al~li~~l~g~-~a~~va~~~~~~~~g  198 (212)
T 3efe_A          162 VTASGIA-PLEFAMEVLKKIDVF-TLDALHSWYNLNKTH  198 (212)
T ss_dssp             EEECTTC-HHHHHHHHHHHHTCS-CHHHHHHHHHHHHHC
T ss_pred             EECCCch-HHHHHHHHHHHhcCC-CHHHHHHHHHHHcCC
Confidence            9999996 899999999999997 999999999987554

>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}

Probab=100.00  E-value=1.7e-35  Score=268.47  Aligned_cols=167  Identities=20%  Similarity=0.252  Sum_probs=157.2

Q ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037           83 PPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL  162 (472)
Q Consensus        83 ~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l  162 (472)
                      .+++|.||+.+||++.|+..|+++|+++|++|+++|+++| ++++++|.++.+|.+++++++.+||+|+||||+ +...+
T Consensus         7 t~~~v~il~~~gFe~~E~~~p~~~l~~ag~~V~~~s~~~~-~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~-g~~~l   84 (177)
T 4hcj_A            7 TNNILYVMSGQNFQDEEYFESKKIFESAGYKTKVSSTFIG-TAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGI-GCITL   84 (177)
T ss_dssp             CCEEEEECCSEEECHHHHHHHHHHHHHTTCEEEEEESSSE-EEEETTSCEEEECEEGGGCCGGGCSEEEECCSG-GGGGG
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHHHHCCCEEEEEECCCC-eEeeCCCCEEecCccHHHCCHhHCCEEEECCCc-cHHHH
Confidence            4567888999999999999999999999999999999987 999999999999999999998899999999995 66778


Q ss_pred             cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC--CccccCcEEEeCCEEeCCCCCChH
Q 012037          163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRGPGTSF  240 (472)
Q Consensus       163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~~v~Dg~iiTa~g~~~~~  240 (472)
                      ..++.+.+||+++++++|+|++||+|+ ++|+++|||+||++|+||...+.+++  ..|+++++|+|||+|||+|+.+++
T Consensus        85 ~~~~~~~~~l~~~~~~~k~iaaIC~g~-~~La~aGlL~gr~~T~~~~~~~~l~~~ga~~~~~~vV~Dg~liTs~g~~~~~  163 (177)
T 4hcj_A           85 WDDWRTQGLAKLFLDNQKIVAGIGSGV-VIMANAKILEEINVTCLSADESHVRHGNANIMSENVVVSGNIVTANGPTSSK  163 (177)
T ss_dssp             TTCHHHHHHHHHHHHTTCEEEEETTHH-HHHHHTTCCTTCEECCCGGGHHHHHHTTCEECSSSEEEETTEEEECSGGGHH
T ss_pred             hhCHHHHHHHHHHHHhCCEEEEecccH-HHHHHCCCCCCCEEEEeCCHHHHHHhCCCEEecCCEEEECCEEECCCHHHHH
Confidence            899999999999999999999999974 68999999999999999999999887  788999999999999999999999


Q ss_pred             HHHHHHHHHHhC
Q 012037          241 EFALCLVEQLFG  252 (472)
Q Consensus       241 dlal~li~~~~g  252 (472)
                      ||++++|+.+.+
T Consensus       164 ~~a~~lve~L~s  175 (177)
T 4hcj_A          164 DFANAVVGVLNS  175 (177)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999999865

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A

Probab=100.00  E-value=5.7e-35  Score=263.73  Aligned_cols=164  Identities=21%  Similarity=0.367  Sum_probs=154.7

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ  366 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~  366 (472)
                      .+||+|+++|||++.|+..++++|+.+||+++++|++++ ++++++|+.+.++..+++++..+||+|+||||. +...+.
T Consensus         2 ~~ki~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~-~~~~~~   79 (168)
T 3l18_A            2 SMKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRG-KITGKHGYSVNVDLTFEEVDPDEFDALVLPGGK-APEIVR   79 (168)
T ss_dssp             CCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSE-EEECTTSCEEEECEEGGGCCGGGCSEEEECCBS-HHHHHT
T ss_pred             CcEEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEECCCC-EEecCCCcEEeccCChhHCCHhhCCEEEECCCc-CHHHhc
Confidence            479999999999999999999999999999999999998 999999999999999999876789999999997 566677


Q ss_pred             ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc--ceecCCcEEECCCEEEcCChhhHHHH
Q 012037          367 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLANVIDF  444 (472)
Q Consensus       367 ~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~vv~dg~iiTa~g~~~~~d~  444 (472)
                      .++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.+++  ..+.++.+|+|||+|||+|+.+++||
T Consensus        80 ~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~d~  159 (168)
T 3l18_A           80 LNEKAVMITRRMFEDDKPVASICHGPQILISAKVLKGRRGTSTITIRDDVINAGAEWIDAEVVVDGNWVSSRHPGDLYAW  159 (168)
T ss_dssp             TCHHHHHHHHHHHHTTCCEEEETTTHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTEEEECSGGGHHHH
T ss_pred             cCHHHHHHHHHHHHCCCEEEEECHhHHHHHHCCccCCCEEEeCccHHHHHHhCCCEEecCCEEEeCCEEEcCCHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999987  45678899999999999999999999


Q ss_pred             HHHHHHHh
Q 012037          445 ALAIVSKF  452 (472)
Q Consensus       445 al~li~~~  452 (472)
                      ++++|+++
T Consensus       160 ~l~li~~l  167 (168)
T 3l18_A          160 MREFVKLL  167 (168)
T ss_dssp             HHHHGGGC
T ss_pred             HHHHHHhh
Confidence            99999876

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}

Probab=100.00  E-value=5.6e-35  Score=273.75  Aligned_cols=189  Identities=17%  Similarity=0.201  Sum_probs=168.0

Q ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHH--------hCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcC
Q 012037           83 PPKKVLVPVGFGTEEMEAVIIVDVLR--------RAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPG  154 (472)
Q Consensus        83 ~~~kV~ill~~g~~~~e~~~~~~~l~--------~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpG  154 (472)
                      .|+||+|+++|||++.|+..++++|+        +.+|+|+++|++++ +|++++|+.+.+|.+++++++.+||+|+|||
T Consensus         4 ~m~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~-~v~~~~G~~i~~d~~~~~~~~~~~D~livpG   82 (212)
T 3efe_A            4 QTKKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKE-MITTMGGLRIKPDISLDECTLESKDLLILPG   82 (212)
T ss_dssp             -CCCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSC-CEECTTCCEECCSEEGGGCCCCTTCEEEECC
T ss_pred             cccEEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCC-eEEcCCCCEEecCcCHHHCCccCCCEEEECC
Confidence            47899999999999999999999999        77899999999987 9999999999999999999888999999999


Q ss_pred             CccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCc-chhccCCC-----CccccCcEEEeC
Q 012037          155 GMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHP-AFTDKLPT-----FWAVKSNIHVSG  228 (472)
Q Consensus       155 G~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~-~~~~~l~~-----~~~~~~~~v~Dg  228 (472)
                      |. +. .+..++.+++||+++++++|+|++||+| .++|+++|||+||++|||| .+.+.|++     ..+.++.+|+||
T Consensus        83 G~-~~-~~~~~~~l~~~l~~~~~~gk~iaaiC~G-~~~La~aGlL~Gr~~Tt~~~~~~~~l~~~~p~~~~~~~~~~V~Dg  159 (212)
T 3efe_A           83 GT-TW-SEEIHQPILERIGQALKIGTIVAAICGA-TDALANMGYLDTRKHTSNNLEYTKMVCPNYKGEKFYELGPAVSDA  159 (212)
T ss_dssp             CS-CT-TSGGGHHHHHHHHHHHHHTCEEEEETHH-HHHHHHTTTTSSSCBCCSCHHHHHHHCTTCCCTTTBCCCSEEEET
T ss_pred             CC-cc-ccccCHHHHHHHHHHHHCCCEEEEEcHH-HHHHHHcCCCCCCeeecCCHHHHHHHHhhCCCccccCCCcEEEEC
Confidence            95 33 3578899999999999999999999996 6799999999999999996 67677654     246788999999


Q ss_pred             CEEeCCCCCChHHHHHHHHHHHhCchhHHhhhhccccccCCcch-hhhcc
Q 012037          229 EVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSL-KKEEF  277 (472)
Q Consensus       229 ~iiTa~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~~~~~~~-~~~~~  277 (472)
                      |+|||+|+. ++||+++||+++.|. .|++|++++.+.+.+.++ |++-+
T Consensus       160 ~iiTs~G~~-~~d~al~li~~l~g~-~a~~va~~~~~~~~g~~~~~~~~~  207 (212)
T 3efe_A          160 NLVTASGIA-PLEFAMEVLKKIDVF-TLDALHSWYNLNKTHKPEYFFQLM  207 (212)
T ss_dssp             TEEEECTTC-HHHHHHHHHHHHTCS-CHHHHHHHHHHHHHCCTHHHHHHH
T ss_pred             CEEECCCch-HHHHHHHHHHHhcCC-CHHHHHHHHHHHcCCCHHHHHHHH
Confidence            999999985 999999999999997 999999999998766555 44433

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}

Probab=100.00  E-value=1e-34  Score=267.42  Aligned_cols=173  Identities=27%  Similarity=0.366  Sum_probs=157.0

Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceec-----CCCcEEeecCCccccCCCcccEEEEcCCCc
Q 012037          286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVA-----SQGVKIIADKSISDAAESVYDLIILPGGVA  360 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s-----~~G~~v~~d~~l~~~~~~~~D~livpGG~~  360 (472)
                      .++||+|+++|||++.|+..++++|+.+||++++++++++ ++++     +.|+.+.++..+++++..+||+||||||..
T Consensus         8 ~~~~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~   86 (190)
T 2vrn_A            8 TGKKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPG-EIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTV   86 (190)
T ss_dssp             TTCEEEEECCTTCBHHHHHHHHHHHHHTTCEEEEEESSSS-EEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCTH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecCCC-ccccccccccCCcEEeCCCChhhCChhhCCEEEECCCch
Confidence            3579999999999999999999999999999999999998 8887     779999999999988767899999999974


Q ss_pred             chhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc--ceecCCcEEECCCEEEcCCh
Q 012037          361 GAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGL  438 (472)
Q Consensus       361 ~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~vv~dg~iiTa~g~  438 (472)
                      +...+..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|++  ..+.+..+++|||+|||+|+
T Consensus        87 ~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~aGlL~gr~~Tt~~~~~~~l~~~~~~~~~~~~v~Dg~iiTs~g~  166 (190)
T 2vrn_A           87 NPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSETGIAQGLKMTSWSSLKRELTLAGAQWVDEECVTDKGVVTSRKP  166 (190)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHTTTTTTCEECCCGGGHHHHHHTTCEECCCSCEEETTEEECSSG
T ss_pred             hHHHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhCcccCCcEEecCccHHHHHHHcCCeEECCCEEEcCCEEEcCCh
Confidence            4556678999999999999999999999999999999999999999999999999986  45566677889999999999


Q ss_pred             hhHHHHHHHHHHHh-cCHHHHH
Q 012037          439 ANVIDFALAIVSKF-FGHARTR  459 (472)
Q Consensus       439 ~~~~d~al~li~~~-~g~~~A~  459 (472)
                      .+++||++++|+++ .|++.|+
T Consensus       167 ~s~~~~~l~li~~l~~g~~~a~  188 (190)
T 2vrn_A          167 DDLPAFNKKIVEEFAEGDHSSR  188 (190)
T ss_dssp             GGHHHHHHHHHHHHHHCCCGGG
T ss_pred             hhHHHHHHHHHHHHhccccccc
Confidence            99999999999999 8887654

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}

Probab=100.00  E-value=2.9e-34  Score=287.05  Aligned_cols=179  Identities=25%  Similarity=0.404  Sum_probs=165.3

Q ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcc-eecCCCc-EEeecCCccccCCCcccEEEEcCCCcch
Q 012037          285 DRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQ-IVASQGV-KIIADKSISDAAESVYDLIILPGGVAGA  362 (472)
Q Consensus       285 ~~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~-v~s~~G~-~v~~d~~l~~~~~~~~D~livpGG~~~~  362 (472)
                      .+|+||+|+++|||+++|+..++++|+.+||+|+++|++++ + |++++|+ .+.+|..+++++..+||+||||||. +.
T Consensus         8 ~~mkkV~ILl~dgf~~~El~~p~dvL~~Ag~~v~vvS~~~g-~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~-g~   85 (365)
T 3fse_A            8 SGKKKVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMN-EKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGM-AP   85 (365)
T ss_dssp             ---CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSS-CCEECTTSCCEECCSEETTTCCGGGCSEEEECCBT-HH
T ss_pred             CCceEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEECCCC-ceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCc-ch
Confidence            35789999999999999999999999999999999999998 7 9999999 9999999999876789999999998 56


Q ss_pred             hcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc--ceecCCcEEECCCEEEcCChhh
Q 012037          363 ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLAN  440 (472)
Q Consensus       363 ~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~vv~dg~iiTa~g~~~  440 (472)
                      ..+..++.+++||+++++++++|++||+|+++||++|||+||++|+||...+.|++  ..+.++.+|+|||+|||+|+.+
T Consensus        86 ~~l~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~AGLLdGrraTthw~~~~~L~~~g~~~~d~~vV~DGniITs~G~~a  165 (365)
T 3fse_A           86 DKMRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEGDLLRGKQATGFIAISKDMMNAGADYLDEALVVDGNLITSREPGD  165 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTEEEECSGGG
T ss_pred             hhccCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCcCCCEEEeChHHHHHHHhCCCEEecCcEEEECCEEECCCHHH
Confidence            66778999999999999999999999999999999999999999999999999986  5667889999999999999999


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHhhc
Q 012037          441 VIDFALAIVSKFFGHARTRSVAEGL  465 (472)
Q Consensus       441 ~~d~al~li~~~~g~~~A~~va~~l  465 (472)
                      ++||++++|+++.|.+.|+++|+..
T Consensus       166 ~~d~al~lIe~L~g~~~A~~lA~~~  190 (365)
T 3fse_A          166 LAIFTTAILSRLGYGGKDAALPDEK  190 (365)
T ss_dssp             HHHHHHHHHHHTTCCCSSSCCCCTT
T ss_pred             HHHHHHHHHHHhcCchHHHHHhhhh
Confidence            9999999999999998888877654

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}

Probab=100.00  E-value=4.1e-34  Score=263.38  Aligned_cols=174  Identities=23%  Similarity=0.299  Sum_probs=158.3

Q ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceec-----cCCceeeeCCCcCCCCCCcccEEEEcCCc
Q 012037           82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEA-----SSGTRLVADTSISNCSHQVFDLIALPGGM  156 (472)
Q Consensus        82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~-----~~G~~v~~d~~~~~~~~~~~D~vivpGG~  156 (472)
                      +.++||+||++|||+..|+..++++|+++||++++++++++ ++++     +.|..+.+|.++++.++.+||+||||||.
T Consensus         7 ~~~~~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~   85 (190)
T 2vrn_A            7 LTGKKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPG-EIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGT   85 (190)
T ss_dssp             CTTCEEEEECCTTCBHHHHHHHHHHHHHTTCEEEEEESSSS-EEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCT
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecCCC-ccccccccccCCcEEeCCCChhhCChhhCCEEEECCCc
Confidence            45789999999999999999999999999999999999987 8887     77999999999998877789999999995


Q ss_pred             cccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC--CccccCcEEEeCCEEeCC
Q 012037          157 PGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSR  234 (472)
Q Consensus       157 ~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~~v~Dg~iiTa~  234 (472)
                      .+...+..++++++||+++++++|+|+++|+| .++|+++|||+||++||||...+.|++  ..++++.+++|||+|||+
T Consensus        86 ~~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G-~~~La~aGlL~gr~~Tt~~~~~~~l~~~~~~~~~~~~v~Dg~iiTs~  164 (190)
T 2vrn_A           86 VNPDKLRLEEGAMKFVRDMYDAGKPIAAICHG-PWSLSETGIAQGLKMTSWSSLKRELTLAGAQWVDEECVTDKGVVTSR  164 (190)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCEEEC-CT-THHHHHTTTTTTCEECCCGGGHHHHHHTTCEECCCSCEEETTEEECS
T ss_pred             hhHHHHhhCHHHHHHHHHHHHcCCEEEEECHh-HHHHHhCcccCCcEEecCccHHHHHHHcCCeEECCCEEEcCCEEEcC
Confidence            45556778999999999999999999999996 569999999999999999999998877  677777888899999999


Q ss_pred             CCCChHHHHHHHHHHH-hCchhHH
Q 012037          235 GPGTSFEFALCLVEQL-FGESVAK  257 (472)
Q Consensus       235 g~~~~~dlal~li~~~-~g~~~a~  257 (472)
                      |+.++.||++++|+++ .|++.|+
T Consensus       165 g~~s~~~~~l~li~~l~~g~~~a~  188 (190)
T 2vrn_A          165 KPDDLPAFNKKIVEEFAEGDHSSR  188 (190)
T ss_dssp             SGGGHHHHHHHHHHHHHHCCCGGG
T ss_pred             ChhhHHHHHHHHHHHHhccccccc
Confidence            9999999999999999 8988775

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2

Probab=100.00  E-value=2.1e-33  Score=259.30  Aligned_cols=171  Identities=21%  Similarity=0.323  Sum_probs=157.5

Q ss_pred             ccccCCCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcc-eecCCCc-EEeecCCccccCCCcccEEEEcCC
Q 012037          281 EWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQ-IVASQGV-KIIADKSISDAAESVYDLIILPGG  358 (472)
Q Consensus       281 ~~~~~~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~-v~s~~G~-~v~~d~~l~~~~~~~~D~livpGG  358 (472)
                      .|...+++||+|+++|||++.|+..++++|+++||++++++++++ + +++++|+ .+.++..+++++..+||+||||||
T Consensus        17 ~~~~~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG   95 (193)
T 1oi4_A           17 YKKAGLSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAG-KTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGG   95 (193)
T ss_dssp             TTTTTCCCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTT-CEEECTTSSCEEECCEEGGGCCGGGCSEEEECCB
T ss_pred             ehhhccCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCC-cceecCCCCeEEECCCChHHCCcccCCEEEECCC
Confidence            444457789999999999999999999999999999999999998 7 9999999 999999999886678999999999


Q ss_pred             CcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc--ceecCCcEEECCC-EEEc
Q 012037          359 VAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGK-VITS  435 (472)
Q Consensus       359 ~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~vv~dg~-iiTa  435 (472)
                      . +...+..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|++  ..+.++.+|+||| +|||
T Consensus        96 ~-~~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~aGLL~Gr~~Tth~~~~~~l~~~~~~~~~~~~v~Dg~~iiTs  174 (193)
T 1oi4_A           96 H-SPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTS  174 (193)
T ss_dssp             T-HHHHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTTEEEE
T ss_pred             c-CHHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHCCccCCCEEEeChhHHHHHHHcCCEEecCCEEEECCEEEEC
Confidence            6 5666777899999999999999999999999999999999999999999999999986  4667778899999 9999


Q ss_pred             CChhhHHHHHHHHHHHhc
Q 012037          436 RGLANVIDFALAIVSKFF  453 (472)
Q Consensus       436 ~g~~~~~d~al~li~~~~  453 (472)
                      +|+.+++||++++|+++.
T Consensus       175 ~g~~~~~d~~l~li~~l~  192 (193)
T 1oi4_A          175 RTPDDLPAFNREALRLLG  192 (193)
T ss_dssp             SSGGGHHHHHHHHHHHHC
T ss_pred             CCcchHHHHHHHHHHHhh
Confidence            999999999999999874

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2

Probab=100.00  E-value=4.7e-34  Score=262.57  Aligned_cols=176  Identities=22%  Similarity=0.290  Sum_probs=158.3

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHh-CCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRR-AKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  365 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~-a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~  365 (472)
                      |+||+|+++|||++.|+..++++|++ ++|+++++|++++ ++++++|+.+.++..+++++..+||+||||||.. . ..
T Consensus         1 m~~i~ill~~g~~~~e~~~~~~~l~~a~~~~v~~vs~~~~-~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~-~-~~   77 (188)
T 2fex_A            1 MTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM-PVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLS-W-EK   77 (188)
T ss_dssp             CCEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSS-CEECTTCCEEECSEEGGGCCTTTCSEEEECCBSH-H-HH
T ss_pred             CcEEEEEeCCCchHHHHHHHHHHHhhcCCceEEEEeCCCC-ceeeCCCcEEeccccHHHCCcccCCEEEECCCCc-c-cc
Confidence            57999999999999999999999999 9999999999998 9999999999999999998666899999999973 3 24


Q ss_pred             cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc-----ceecCCc-EEECCCEEEcCChh
Q 012037          366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN-----EVVNGTK-VVVDGKVITSRGLA  439 (472)
Q Consensus       366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~-----~~~~~~~-vv~dg~iiTa~g~~  439 (472)
                      ..++.+++||+++++++++|++||+|+++|+++|||+||++|+||.....+++     ..+.++. +|+|||+|||+|+.
T Consensus        78 ~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~gr~~T~~~~~~~~~~~~~~~~~~~~~~~~~v~Dg~iiTs~g~~  157 (188)
T 2fex_A           78 GTAADLGGLVKRFRDRDRLVAGICAAASALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGSA  157 (188)
T ss_dssp             TCCCCCHHHHHHHHHTTCEEEEETHHHHHHHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCCSSCEEETTEEEECTTC
T ss_pred             cccHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCcCCccccCCcHHHHhhhhhcCCccceecCCCEEEECCEEECCCcc
Confidence            57889999999999999999999999999999999999999999987665543     2566778 99999999999996


Q ss_pred             hHHHHHHHHHHHhcCHHHHHHHHhhcccc
Q 012037          440 NVIDFALAIVSKFFGHARTRSVAEGLVFE  468 (472)
Q Consensus       440 ~~~d~al~li~~~~g~~~A~~va~~l~~~  468 (472)
                       ++||++++|+++.|.+.+.  ++.+.|.
T Consensus       158 -~~d~al~lv~~l~~~~~~~--~~~~~~~  183 (188)
T 2fex_A          158 -PVSFAVEILKSLGLFGPEA--EAELQIF  183 (188)
T ss_dssp             -HHHHHHHHHHHTTCCSHHH--HHHHGGG
T ss_pred             -HHHHHHHHHHHccCCCHHH--HHHHHHH
Confidence             8999999999999998887  6666553

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A

Probab=100.00  E-value=3.4e-34  Score=258.63  Aligned_cols=164  Identities=23%  Similarity=0.334  Sum_probs=153.3

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR  163 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~  163 (472)
                      ++||+|+++|||+..|+..++++|+++||+++++|++++ ++++++|..+.+|.+++++++.+||+|+||||. +...+.
T Consensus         2 ~~ki~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~-~~~~~~   79 (168)
T 3l18_A            2 SMKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRG-KITGKHGYSVNVDLTFEEVDPDEFDALVLPGGK-APEIVR   79 (168)
T ss_dssp             CCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSE-EEECTTSCEEEECEEGGGCCGGGCSEEEECCBS-HHHHHT
T ss_pred             CcEEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEECCCC-EEecCCCcEEeccCChhHCCHhhCCEEEECCCc-CHHHhc
Confidence            689999999999999999999999999999999999987 999999999999999999887789999999995 555677


Q ss_pred             CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC--CccccCcEEEeCCEEeCCCCCChHH
Q 012037          164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRGPGTSFE  241 (472)
Q Consensus       164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~~v~Dg~iiTa~g~~~~~d  241 (472)
                      .++.+.+||+++++++|+|+++|+| .++|+++|||+||++||||...+.|++  ..++++.+|+|||+|||+|+.++.|
T Consensus        80 ~~~~l~~~l~~~~~~~k~i~aiC~G-~~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~d  158 (168)
T 3l18_A           80 LNEKAVMITRRMFEDDKPVASICHG-PQILISAKVLKGRRGTSTITIRDDVINAGAEWIDAEVVVDGNWVSSRHPGDLYA  158 (168)
T ss_dssp             TCHHHHHHHHHHHHTTCCEEEETTT-HHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTEEEECSGGGHHH
T ss_pred             cCHHHHHHHHHHHHCCCEEEEECHh-HHHHHHCCccCCCEEEeCccHHHHHHhCCCEEecCCEEEeCCEEEcCCHHHHHH
Confidence            8999999999999999999999996 668999999999999999999999987  4677889999999999999999999


Q ss_pred             HHHHHHHHH
Q 012037          242 FALCLVEQL  250 (472)
Q Consensus       242 lal~li~~~  250 (472)
                      |++++|+++
T Consensus       159 ~~l~li~~l  167 (168)
T 3l18_A          159 WMREFVKLL  167 (168)
T ss_dssp             HHHHHGGGC
T ss_pred             HHHHHHHhh
Confidence            999999875

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}

Probab=100.00  E-value=5.2e-34  Score=265.58  Aligned_cols=175  Identities=18%  Similarity=0.241  Sum_probs=155.9

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhC-CCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRRA-KVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  365 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~a-~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~  365 (472)
                      |+||+|+++|||+++|+..++++|+++ +|+++++|++++  |++++|+++.+|..++++ +.+||+|+||||. +... 
T Consensus         3 m~kV~ill~~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~~--V~~~~G~~v~~d~~l~~~-~~~~D~livpGG~-~~~~-   77 (206)
T 3f5d_A            3 LKKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPI--VSSIGGFKTSVDYIIGLE-PANFNLLVMIGGD-SWSN-   77 (206)
T ss_dssp             CEEEEEECCSSBCTTTSHHHHHHHHTSTTEEEEEEESSSE--EEBTTSCEEECSEETTSS-CSCCSEEEECCBS-CCCC-
T ss_pred             ccEEEEEEcCCCcHHHHHHHHHHHhccCCeEEEEEECCCC--EEecCCcEEecCcChhhC-CcCCCEEEEcCCC-Chhh-
Confidence            679999999999999999999999998 999999999985  999999999999999987 3589999999997 3443 


Q ss_pred             cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHh-hhh----cceecCCcEEECCCEEEcCChhh
Q 012037          366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIG-KLT----NEVVNGTKVVVDGKVITSRGLAN  440 (472)
Q Consensus       366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~-~l~----~~~~~~~~vv~dg~iiTa~g~~~  440 (472)
                       .++.+++||+++++++++|++||+|+++||++|||+||++|+||...- .++    ...+.++.+|+|||+|||+|+. 
T Consensus        78 -~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~aGLL~Gr~aTthw~~~~~~~~~~~~~~~~~~~~~V~Dg~iiTs~G~a-  155 (206)
T 3f5d_A           78 -DNKKLLHFVKTAFQKNIPIAAICGAVDFLAKNGLLNNHSHTGNFVYLWKDYKQYKPISSFVEKQAVRDKNLVTANGTA-  155 (206)
T ss_dssp             -CCHHHHHHHHHHHHTTCCEEEETHHHHHHHHTTTTTTSCBCCSCGGGGTTCTTCCCSSCBCCSSEEEETTEEEECTTC-
T ss_pred             -cCHHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCCEEEccCHHHhhhhHhhcCCCeEccCCEEEECCEEECCCch-
Confidence             899999999999999999999999999999999999999999994221 121    2456788999999999999986 


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHhhccccc
Q 012037          441 VIDFALAIVSKFFGHARTRSVAEGLVFEY  469 (472)
Q Consensus       441 ~~d~al~li~~~~g~~~A~~va~~l~~~~  469 (472)
                      ++||++++|+++ +.+.|+++++.|++.+
T Consensus       156 ~id~al~li~~l-~~~~a~~va~~~~~~~  183 (206)
T 3f5d_A          156 PIEFTNLILEMI-DFDTPENIEKMMYMNR  183 (206)
T ss_dssp             HHHHHHHHHHHT-TCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-CcchHHHHHHHhhhhh
Confidence            899999999975 5789999999998854

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}

Probab=100.00  E-value=3.2e-34  Score=272.05  Aligned_cols=185  Identities=21%  Similarity=0.237  Sum_probs=164.8

Q ss_pred             CCCCcEEEEEeCCCCcHHHHHHHHHHHHhCC--CEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc
Q 012037           81 AVPPKKVLVPVGFGTEEMEAVIIVDVLRRAG--AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG  158 (472)
Q Consensus        81 ~~~~~kV~ill~~g~~~~e~~~~~~~l~~ag--~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~  158 (472)
                      ..+++||+||++|||+..|+..++++|+.++  |++++++ +++ +|++++|..+.+|..+++.  .+||+||||||+.+
T Consensus        17 ~~~~~kV~ill~dGf~~~e~~~p~dvl~~~~~~~~v~~vs-~~~-~V~ss~G~~v~~d~~l~~~--~~~D~liVPGG~~g   92 (236)
T 3bhn_A           17 FQGMYKVGIVLFDDFTDVDFFLMNDLLGRTSDSWTVRILG-TKP-EHHSQLGMTVKTDGHVSEV--KEQDVVLITSGYRG   92 (236)
T ss_dssp             ---CEEEEEECCTTBCHHHHHHHHHHHTTCSSSEEEEEEE-SSS-EEEBTTCCEEECSEEGGGG--GGCSEEEECCCTTH
T ss_pred             cCCCCEEEEEeCCCChHHHHHHHHHHHHcCCCCEEEEEEE-CCC-cEEecCCcEEecCcccccc--cCCCEEEEcCCccC
Confidence            4567899999999999999999999999976  8999999 876 9999999999999999874  48999999999434


Q ss_pred             cccccCChHHHHHHHHHHhcCC-eEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC--CccccCcEEEeCCEEeCCC
Q 012037          159 SVRLRDCEILKKITSKQAEEKR-LYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRG  235 (472)
Q Consensus       159 ~~~l~~~~~~~~~l~~~~~~~k-~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~~v~Dg~iiTa~g  235 (472)
                      ...+..++.+++||  ++++++ +|++||+| .++|+++|||+||++||||...+.|++  ..+.++.+|+|||+|||+|
T Consensus        93 ~~~l~~~~~l~~~L--~~~~~~~~IaaIC~G-~~lLa~AGLL~Gr~aTth~~~~~~l~~~~p~~~~~~vV~Dg~iiTs~G  169 (236)
T 3bhn_A           93 IPAALQDENFMSAL--KLDPSRQLIGSICAG-SFVLHELGLLKGKKLTTNPDAKAVLQGMGGDVQDLPLVIEGNIATAGG  169 (236)
T ss_dssp             HHHHHTCHHHHHHC--CCCTTTCEEEEETTH-HHHHHHTTTTTTCEECCCGGGHHHHHHTTCEECSSSEEEETTEEEECS
T ss_pred             HhhhccCHHHHHHH--HhCCCCCEEEEEcHH-HHHHHHcCCCCCCEEECCHHHHHHHHHhCCccCCCcEEEeCCEEECCC
Confidence            55577899999999  777777 99999996 669999999999999999999999987  4567889999999999999


Q ss_pred             CCChHHHHHHHHHHHhCchhHHhhhhccccccCCcch
Q 012037          236 PGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSL  272 (472)
Q Consensus       236 ~~~~~dlal~li~~~~g~~~a~~va~~l~~~~~~~~~  272 (472)
                      +.+++||++++|++++|.+.|+++++.|++++.++..
T Consensus       170 ~~a~~dlal~lIe~l~G~~~A~~va~~l~~~~~~~~~  206 (236)
T 3bhn_A          170 CLSLLYLVGWLAERLFDSVKRKQIQNQLIPAGQMEIF  206 (236)
T ss_dssp             GGGHHHHHHHHHHHHSCHHHHHHHHTTTSCTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHhcccCCCCchh
Confidence            9999999999999999999999999999998766544

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}

Probab=100.00  E-value=6.4e-33  Score=258.21  Aligned_cols=181  Identities=20%  Similarity=0.203  Sum_probs=159.9

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhC-CCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRA-GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL  162 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~a-g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l  162 (472)
                      |+||+|+++|||++.|+..++++|+++ +|+++++|++++  |++++|+.+.+|.++++. +.+||+|+||||. +... 
T Consensus         3 m~kV~ill~~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~~--V~~~~G~~v~~d~~l~~~-~~~~D~livpGG~-~~~~-   77 (206)
T 3f5d_A            3 LKKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPI--VSSIGGFKTSVDYIIGLE-PANFNLLVMIGGD-SWSN-   77 (206)
T ss_dssp             CEEEEEECCSSBCTTTSHHHHHHHHTSTTEEEEEEESSSE--EEBTTSCEEECSEETTSS-CSCCSEEEECCBS-CCCC-
T ss_pred             ccEEEEEEcCCCcHHHHHHHHHHHhccCCeEEEEEECCCC--EEecCCcEEecCcChhhC-CcCCCEEEEcCCC-Chhh-
Confidence            789999999999999999999999998 999999999964  999999999999999987 4689999999995 4443 


Q ss_pred             cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchh-ccCC----CCccccCcEEEeCCEEeCCCCC
Q 012037          163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFT-DKLP----TFWAVKSNIHVSGEVTTSRGPG  237 (472)
Q Consensus       163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~-~~l~----~~~~~~~~~v~Dg~iiTa~g~~  237 (472)
                       .++.+++||+++++++|+|++||+| .++|+++|||+||++||||... ..+.    ...++++++|+|||+|||+|+.
T Consensus        78 -~~~~l~~~l~~~~~~gk~iaaiC~G-~~~La~aGLL~Gr~aTthw~~~~~~~~~~~~~~~~~~~~~V~Dg~iiTs~G~a  155 (206)
T 3f5d_A           78 -DNKKLLHFVKTAFQKNIPIAAICGA-VDFLAKNGLLNNHSHTGNFVYLWKDYKQYKPISSFVEKQAVRDKNLVTANGTA  155 (206)
T ss_dssp             -CCHHHHHHHHHHHHTTCCEEEETHH-HHHHHHTTTTTTSCBCCSCGGGGTTCTTCCCSSCBCCSSEEEETTEEEECTTC
T ss_pred             -cCHHHHHHHHHHHHcCCEEEEECHH-HHHHHHcCCCCCCEEEccCHHHhhhhHhhcCCCeEccCCEEEECCEEECCCch
Confidence             8899999999999999999999996 5799999999999999999421 1222    2567888999999999999986


Q ss_pred             ChHHHHHHHHHHHhCchhHHhhhhccccccCCcchh
Q 012037          238 TSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLK  273 (472)
Q Consensus       238 ~~~dlal~li~~~~g~~~a~~va~~l~~~~~~~~~~  273 (472)
                       ++||+++||++ ++.+.|++|++.|++.+..-.++
T Consensus       156 -~id~al~li~~-l~~~~a~~va~~~~~~~~g~~~~  189 (206)
T 3f5d_A          156 -PIEFTNLILEM-IDFDTPENIEKMMYMNRYGFYHF  189 (206)
T ss_dssp             -HHHHHHHHHHH-TTCSCHHHHHHHHHHHHHCHHHH
T ss_pred             -HHHHHHHHHHH-hCcchHHHHHHHhhhhhccchhh
Confidence             99999999996 56789999999999987666554

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}

Probab=100.00  E-value=2.8e-33  Score=279.91  Aligned_cols=181  Identities=23%  Similarity=0.305  Sum_probs=165.2

Q ss_pred             CCCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcc-eeccCCc-eeeeCCCcCCCCCCcccEEEEcCCccc
Q 012037           81 AVPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLE-VEASSGT-RLVADTSISNCSHQVFDLIALPGGMPG  158 (472)
Q Consensus        81 ~~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~-v~~~~G~-~v~~d~~~~~~~~~~~D~vivpGG~~~  158 (472)
                      ...++||+||++|||+..|+..++++|+++||+|+++|++++ + |++++|. .+.+|..++++++.+||+||||||. +
T Consensus         7 ~~~mkkV~ILl~dgf~~~El~~p~dvL~~Ag~~v~vvS~~~g-~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~-g   84 (365)
T 3fse_A            7 NSGKKKVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMN-EKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGM-A   84 (365)
T ss_dssp             ----CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSS-CCEECTTSCCEECCSEETTTCCGGGCSEEEECCBT-H
T ss_pred             CCCceEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEECCCC-ceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCc-c
Confidence            356899999999999999999999999999999999999987 6 9999999 9999999999887789999999995 5


Q ss_pred             cccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC--CccccCcEEEeCCEEeCCCC
Q 012037          159 SVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRGP  236 (472)
Q Consensus       159 ~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~~v~Dg~iiTa~g~  236 (472)
                      ...+..++.+.+||+++++++|+|++||+| .++|+++|||+||++||||.+.+.|++  ..++++.+|+|||+|||+|+
T Consensus        85 ~~~l~~~~~l~~~Lr~~~~~gk~IaAIC~G-~~lLA~AGLLdGrraTthw~~~~~L~~~g~~~~d~~vV~DGniITs~G~  163 (365)
T 3fse_A           85 PDKMRRNPNTVRFVQEAMEQGKLVAAVCHG-PQVLIEGDLLRGKQATGFIAISKDMMNAGADYLDEALVVDGNLITSREP  163 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCEEEEETTT-HHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTEEEECSG
T ss_pred             hhhccCCHHHHHHHHHHHHCCCEEEEECHH-HHHHHHcCCcCCCEEEeChHHHHHHHhCCCEEecCcEEEECCEEECCCH
Confidence            556778999999999999999999999996 679999999999999999999999886  67888899999999999999


Q ss_pred             CChHHHHHHHHHHHhCchhHHhhhhccc
Q 012037          237 GTSFEFALCLVEQLFGESVAKEIGELLL  264 (472)
Q Consensus       237 ~~~~dlal~li~~~~g~~~a~~va~~l~  264 (472)
                      .+++||++++|+++.|.+.|+++++..-
T Consensus       164 ~a~~d~al~lIe~L~g~~~A~~lA~~~~  191 (365)
T 3fse_A          164 GDLAIFTTAILSRLGYGGKDAALPDEKD  191 (365)
T ss_dssp             GGHHHHHHHHHHHTTCCCSSSCCCCTTC
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHhhhhh
Confidence            9999999999999999999988886543

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2

Probab=99.98  E-value=1.6e-32  Score=252.34  Aligned_cols=176  Identities=19%  Similarity=0.250  Sum_probs=157.0

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHh-CCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRR-AGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL  162 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~-ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l  162 (472)
                      |+||+|+++|||++.|+..++++|++ .+|+++++|++++ +|++++|..+.+|.++++.++.+||+|+||||. +. .+
T Consensus         1 m~~i~ill~~g~~~~e~~~~~~~l~~a~~~~v~~vs~~~~-~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~-~~-~~   77 (188)
T 2fex_A            1 MTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM-PVTSMGGLKVTPDTSYDALDPVDIDALVIPGGL-SW-EK   77 (188)
T ss_dssp             CCEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSS-CEECTTCCEEECSEEGGGCCTTTCSEEEECCBS-HH-HH
T ss_pred             CcEEEEEeCCCchHHHHHHHHHHHhhcCCceEEEEeCCCC-ceeeCCCcEEeccccHHHCCcccCCEEEECCCC-cc-cc
Confidence            57999999999999999999999999 9999999999987 999999999999999999887789999999995 22 24


Q ss_pred             cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC-C----ccccCc-EEEeCCEEeCCCC
Q 012037          163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-F----WAVKSN-IHVSGEVTTSRGP  236 (472)
Q Consensus       163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~-~----~~~~~~-~v~Dg~iiTa~g~  236 (472)
                      ..++.+.+||+++++++|+|++||+| .++|+++|||+||++||||.....+++ +    .+.++. +|+|||+|||+|+
T Consensus        78 ~~~~~l~~~l~~~~~~~k~i~aiC~G-~~~La~aGlL~gr~~T~~~~~~~~~~~~~~~~~~~~~~~~~v~Dg~iiTs~g~  156 (188)
T 2fex_A           78 GTAADLGGLVKRFRDRDRLVAGICAA-ASALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGS  156 (188)
T ss_dssp             TCCCCCHHHHHHHHHTTCEEEEETHH-HHHHHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCCSSCEEETTEEEECTT
T ss_pred             cccHHHHHHHHHHHHCCCEEEEECHH-HHHHHHCCCcCCccccCCcHHHHhhhhhcCCccceecCCCEEEECCEEECCCc
Confidence            57899999999999999999999996 568999999999999999987766554 2    467788 9999999999998


Q ss_pred             CChHHHHHHHHHHHhCchhHHhhhhccccc
Q 012037          237 GTSFEFALCLVEQLFGESVAKEIGELLLMH  266 (472)
Q Consensus       237 ~~~~dlal~li~~~~g~~~a~~va~~l~~~  266 (472)
                      . ++||++++|+++.|.+.++  ++.+.+.
T Consensus       157 ~-~~d~al~lv~~l~~~~~~~--~~~~~~~  183 (188)
T 2fex_A          157 A-PVSFAVEILKSLGLFGPEA--EAELQIF  183 (188)
T ss_dssp             C-HHHHHHHHHHHTTCCSHHH--HHHHGGG
T ss_pred             c-HHHHHHHHHHHccCCCHHH--HHHHHHH
Confidence            5 8999999999999999886  6555544

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2

Probab=99.98  E-value=3.3e-32  Score=251.28  Aligned_cols=167  Identities=22%  Similarity=0.247  Sum_probs=154.3

Q ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcc-eeccCCc-eeeeCCCcCCCCCCcccEEEEcCCcccc
Q 012037           82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLE-VEASSGT-RLVADTSISNCSHQVFDLIALPGGMPGS  159 (472)
Q Consensus        82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~-v~~~~G~-~v~~d~~~~~~~~~~~D~vivpGG~~~~  159 (472)
                      ..++||+|+++|||+..|+..++++|+++||++++++++++ + |++++|. .+.+|..+++.+..+||+|+||||. +.
T Consensus        21 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~-~~   98 (193)
T 1oi4_A           21 GLSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAG-KTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGH-SP   98 (193)
T ss_dssp             TCCCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTT-CEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBT-HH
T ss_pred             ccCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCC-cceecCCCCeEEECCCChHHCCcccCCEEEECCCc-CH
Confidence            45789999999999999999999999999999999999987 7 9999999 9999999998876789999999994 55


Q ss_pred             ccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC--CccccCcEEEeCC-EEeCCCC
Q 012037          160 VRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGE-VTTSRGP  236 (472)
Q Consensus       160 ~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~~v~Dg~-iiTa~g~  236 (472)
                      ..+..++.+.+||+++++++|+|++||+| .++|+++|||+||++||||...+.|++  ..++++++|+||| +|||+|+
T Consensus        99 ~~l~~~~~l~~~l~~~~~~gk~i~aIC~G-~~lLa~aGLL~Gr~~Tth~~~~~~l~~~~~~~~~~~~v~Dg~~iiTs~g~  177 (193)
T 1oi4_A           99 DYLRGDNRFVTFTRDFVNSGKPVFAICHG-PQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTP  177 (193)
T ss_dssp             HHHTTSHHHHHHHHHHHHTTCCEEEETTT-HHHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTTEEEESSG
T ss_pred             HHhhhCHHHHHHHHHHHHcCCEEEEECHH-HHHHHHCCccCCCEEEeChhHHHHHHHcCCEEecCCEEEECCEEEECCCc
Confidence            66777899999999999999999999996 669999999999999999999999876  6788888999999 9999999


Q ss_pred             CChHHHHHHHHHHHh
Q 012037          237 GTSFEFALCLVEQLF  251 (472)
Q Consensus       237 ~~~~dlal~li~~~~  251 (472)
                      .++.||++++|+++.
T Consensus       178 ~~~~d~~l~li~~l~  192 (193)
T 1oi4_A          178 DDLPAFNREALRLLG  192 (193)
T ss_dssp             GGHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHhh
Confidence            999999999999874

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.98  E-value=3.5e-32  Score=247.10  Aligned_cols=160  Identities=19%  Similarity=0.328  Sum_probs=145.9

Q ss_pred             CCEEEEEeCC---C---CCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCcccc--CCCcccEEEEcCC
Q 012037          287 MPRVLIPIAN---G---SEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA--AESVYDLIILPGG  358 (472)
Q Consensus       287 ~~~V~il~~~---g---~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~--~~~~~D~livpGG  358 (472)
                      ++||+|+++|   |   |+++|+..      +++|+++++|.+++.++++++|+++.++..++++  +..+||+||||||
T Consensus         2 ~~~v~ill~~~~~g~~~~~~~e~~~------~~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpGG   75 (175)
T 3cne_A            2 AKKVAVLAVNPVNGCGLFQYLEAFF------ENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCG   75 (175)
T ss_dssp             CCEEEEEECSSBCHHHHHHHHHHHH------HTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEECC
T ss_pred             CcEEEEEEecCcCCCccchhhheee------eCCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCcccCCEEEECCC
Confidence            4799999999   9   88888776      7899999999995338999999999999999987  6688999999999


Q ss_pred             --Ccchhccc---ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhcceecCCcEEECCCEE
Q 012037          359 --VAGAERLQ---KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVI  433 (472)
Q Consensus       359 --~~~~~~~~---~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~~~~~~~~vv~dg~ii  433 (472)
                        ..+...+.   .++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|++..+.++.+|+|||+|
T Consensus        76 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~aGlL~G~~~T~~~~~~~~l~~~~~~~~~~v~Dg~ii  155 (175)
T 3cne_A           76 DAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFTGITKGKKVAVHPLAKPAIQNGIATDEKSEIDGNFF  155 (175)
T ss_dssp             TTGGGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHTTTTTTCEEECCGGGGGGCCSSEEESSSEEEETTEE
T ss_pred             cCcccHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCcCCCEEEeCccHHHHhhcCEEeCCCEEEeCCEE
Confidence              53455555   7899999999999999999999999999999999999999999999999988777899999999999


Q ss_pred             EcCChhhHHHHHHHHHHHh
Q 012037          434 TSRGLANVIDFALAIVSKF  452 (472)
Q Consensus       434 Ta~g~~~~~d~al~li~~~  452 (472)
                      ||+|+.+++||++++|+++
T Consensus       156 Ts~g~~~~~d~al~li~~l  174 (175)
T 3cne_A          156 TAQDENTIWTMLPKVIEAL  174 (175)
T ss_dssp             EESSGGGGGGTHHHHHHHH
T ss_pred             eCCChHHHHHHHHHHHHHh
Confidence            9999999999999999986

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2

Probab=99.97  E-value=9.4e-32  Score=254.08  Aligned_cols=169  Identities=22%  Similarity=0.268  Sum_probs=148.8

Q ss_pred             CCCEEEEEeC----------CCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCC--------C-----cEEeecCCc
Q 012037          286 RMPRVLIPIA----------NGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQ--------G-----VKIIADKSI  342 (472)
Q Consensus       286 ~~~~V~il~~----------~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~--------G-----~~v~~d~~l  342 (472)
                      +++||+|+++          +||++.|+..++++|+++||+++++|++++ ++.+..        |     .++.++..+
T Consensus         4 m~~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~~~-~v~~~~~~~~~~~~~~~~~~~~i~~~~~l   82 (224)
T 1u9c_A            4 MSKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGG-EVPLDPRSINEKDPSWAEAEAALKHTARL   82 (224)
T ss_dssp             CCCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCB-CCCBCGGGSSSCCGGGHHHHHHTTSBEEC
T ss_pred             CCceEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCCCC-ccccCccccccHHHHHhhhhHhhcCCCCh
Confidence            4579999999          999999999999999999999999999997 776542        3     678888889


Q ss_pred             cccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC------CCCCceeccChhhHhh-
Q 012037          343 SDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG------LLKAKKATAHPSVIGK-  415 (472)
Q Consensus       343 ~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG------lL~g~~~T~~~~~~~~-  415 (472)
                      ++++..+||+||||||......+..++.+++||+++++++++|++||+|+++|+++|      ||+||++|+||...+. 
T Consensus        83 ~~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~~~La~ag~~~g~~lL~Gr~~T~~~~~~~~~  162 (224)
T 1u9c_A           83 SKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTPIVKGKTVTSFTDEEERE  162 (224)
T ss_dssp             CGGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTSCBTTTTCEECCSCHHHHHH
T ss_pred             HHcChhhCCEEEECCCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChHHHHHHHccccCCCceecCcEEecCCCHHHhh
Confidence            888667899999999985444578899999999999999999999999999999999      9999999999987664 


Q ss_pred             --------------hhc--ceecCCc-----EEECCCEEEcCChhhHHHHHHHHHHHhcCH
Q 012037          416 --------------LTN--EVVNGTK-----VVVDGKVITSRGLANVIDFALAIVSKFFGH  455 (472)
Q Consensus       416 --------------l~~--~~~~~~~-----vv~dg~iiTa~g~~~~~d~al~li~~~~g~  455 (472)
                                    |++  ..+.+..     +|+|||+|||+|+.+++||++++|+++.|+
T Consensus       163 ~~~~~~~p~~~~~~l~~~g~~~~~~~~~~~~vv~Dg~liTs~g~~s~~d~al~lv~~l~g~  223 (224)
T 1u9c_A          163 VGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEER  223 (224)
T ss_dssp             HTCGGGSSSCHHHHHHHTTCEECCCSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTT
T ss_pred             ccccccCCccHHHHHHHcCCEEecCCCCCccEEEeCCEEECCChhhHHHHHHHHHHHHhcc
Confidence                          443  3455554     999999999999999999999999999885

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.97  E-value=6.9e-31  Score=238.58  Aligned_cols=160  Identities=22%  Similarity=0.286  Sum_probs=144.6

Q ss_pred             CcEEEEEeCC---C---CcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCC--CCCcccEEEEcCC
Q 012037           84 PKKVLVPVGF---G---TEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNC--SHQVFDLIALPGG  155 (472)
Q Consensus        84 ~~kV~ill~~---g---~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~--~~~~~D~vivpGG  155 (472)
                      ++||+|+++|   |   |++.|+..      +++|+++++++++|.++++++|..+.+|..+++.  ++.+||+|+||||
T Consensus         2 ~~~v~ill~~~~~g~~~~~~~e~~~------~~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpGG   75 (175)
T 3cne_A            2 AKKVAVLAVNPVNGCGLFQYLEAFF------ENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCG   75 (175)
T ss_dssp             CCEEEEEECSSBCHHHHHHHHHHHH------HTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEECC
T ss_pred             CcEEEEEEecCcCCCccchhhheee------eCCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCcccCCEEEECCC
Confidence            4799999999   9   88877766      7899999999996449999999999999999887  6668999999999


Q ss_pred             --cccccccc---CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCCCccccCcEEEeCCE
Q 012037          156 --MPGSVRLR---DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEV  230 (472)
Q Consensus       156 --~~~~~~l~---~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~v~Dg~i  230 (472)
                        ..+...+.   .++.+.+||+++++++|+|++||+| .++|+++|||+||++||||...+.|++..+.++.+|+|||+
T Consensus        76 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G-~~~La~aGlL~G~~~T~~~~~~~~l~~~~~~~~~~v~Dg~i  154 (175)
T 3cne_A           76 DAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAG-AMMFDFTGITKGKKVAVHPLAKPAIQNGIATDEKSEIDGNF  154 (175)
T ss_dssp             TTGGGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTH-HHHHHHTTTTTTCEEECCGGGGGGCCSSEEESSSEEEETTE
T ss_pred             cCcccHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHH-HHHHHHCCCcCCCEEEeCccHHHHhhcCEEeCCCEEEeCCE
Confidence              54555555   7899999999999999999999996 56999999999999999999999999877888999999999


Q ss_pred             EeCCCCCChHHHHHHHHHHH
Q 012037          231 TTSRGPGTSFEFALCLVEQL  250 (472)
Q Consensus       231 iTa~g~~~~~dlal~li~~~  250 (472)
                      |||+|+.+++||++++|+++
T Consensus       155 iTs~g~~~~~d~al~li~~l  174 (175)
T 3cne_A          155 FTAQDENTIWTMLPKVIEAL  174 (175)
T ss_dssp             EEESSGGGGGGTHHHHHHHH
T ss_pred             EeCCChHHHHHHHHHHHHHh
Confidence            99999999999999999986

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2

Probab=99.97  E-value=1.1e-30  Score=246.77  Aligned_cols=169  Identities=25%  Similarity=0.285  Sum_probs=147.5

Q ss_pred             CcEEEEEeC----------CCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccC--------C-----ceeeeCCCcC
Q 012037           84 PKKVLVPVG----------FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASS--------G-----TRLVADTSIS  140 (472)
Q Consensus        84 ~~kV~ill~----------~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~--------G-----~~v~~d~~~~  140 (472)
                      ++||+|+++          +||+..|+..++++|+++||++++++++++ ++++..        |     ..+.++..++
T Consensus         5 ~~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~~~-~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~   83 (224)
T 1u9c_A            5 SKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGG-EVPLDPRSINEKDPSWAEAEAALKHTARLS   83 (224)
T ss_dssp             CCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCB-CCCBCGGGSSSCCGGGHHHHHHTTSBEECC
T ss_pred             CceEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCCCC-ccccCccccccHHHHHhhhhHhhcCCCChH
Confidence            379999999          999999999999999999999999999976 776543        3     5688898998


Q ss_pred             CCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCC------CCCCceeecCcchhcc-
Q 012037          141 NCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG------LLRRKQITCHPAFTDK-  213 (472)
Q Consensus       141 ~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aG------lL~g~~~T~~~~~~~~-  213 (472)
                      ++++.+||+||||||......+..++.+.+||+++++++|+|++||+| .++|+++|      ||+||++||||...+. 
T Consensus        84 ~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G-~~~La~ag~~~g~~lL~Gr~~T~~~~~~~~~  162 (224)
T 1u9c_A           84 KDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHG-PSGLVNATYKDGTPIVKGKTVTSFTDEEERE  162 (224)
T ss_dssp             GGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTG-GGGGTTCBCTTSCBTTTTCEECCSCHHHHHH
T ss_pred             HcChhhCCEEEECCCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChH-HHHHHHccccCCCceecCcEEecCCCHHHhh
Confidence            887678999999999644445788999999999999999999999996 56899999      9999999999986653 


Q ss_pred             --------------CCC--CccccCc-----EEEeCCEEeCCCCCChHHHHHHHHHHHhCch
Q 012037          214 --------------LPT--FWAVKSN-----IHVSGEVTTSRGPGTSFEFALCLVEQLFGES  254 (472)
Q Consensus       214 --------------l~~--~~~~~~~-----~v~Dg~iiTa~g~~~~~dlal~li~~~~g~~  254 (472)
                                    |++  ..++++.     +|+|||+|||+|+.+++||+++||+++.|++
T Consensus       163 ~~~~~~~p~~~~~~l~~~g~~~~~~~~~~~~vv~Dg~liTs~g~~s~~d~al~lv~~l~g~~  224 (224)
T 1u9c_A          163 VGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEERE  224 (224)
T ss_dssp             HTCGGGSSSCHHHHHHHTTCEECCCSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTTC
T ss_pred             ccccccCCccHHHHHHHcCCEEecCCCCCccEEEeCCEEECCChhhHHHHHHHHHHHHhccC
Confidence                          333  4566654     9999999999999999999999999999864

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A

Probab=99.96  E-value=3.9e-30  Score=245.90  Aligned_cols=167  Identities=16%  Similarity=0.208  Sum_probs=145.4

Q ss_pred             CCEEEEEeC------------CCCCHHHHHHHHHHHHhCCCeEEEEEecCCccee---c-------------------CC
Q 012037          287 MPRVLIPIA------------NGSEEIEIVTIVDILRRAKVDVVVASVERSTQIV---A-------------------SQ  332 (472)
Q Consensus       287 ~~~V~il~~------------~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~---s-------------------~~  332 (472)
                      |+||+|++.            +||++.|+..|+++|+++||+|+++|++++ ++.   +                   +.
T Consensus         3 m~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~ag~~v~~~s~~g~-~~~d~~s~~~~~~~~~~~~~~~~~~~~~   81 (243)
T 1rw7_A            3 PKKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVSETGK-FGWDEHSLAKDFLNGQDETDFKNKDSDF   81 (243)
T ss_dssp             CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSSC-CCBCGGGGSTTTSCHHHHHHHHCTTSHH
T ss_pred             CceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHHCCCEEEEECCCCC-CCcCcccccccccChHHHHHHHhhhHHH
Confidence            579999997            689999999999999999999999999987 432   1                   23


Q ss_pred             CcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC-------CCCCce
Q 012037          333 GVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG-------LLKAKK  405 (472)
Q Consensus       333 G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG-------lL~g~~  405 (472)
                      |+.+.++..+++++.++||+||||||......+..++.+++||+++++++++|++||+|+++|+++|       ||+||+
T Consensus        82 g~~l~~~~~l~~v~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~ag~~~~g~~lL~G~~  161 (243)
T 1rw7_A           82 NKTLAKIKTPKEVNADDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGLTDKKTGRPLIEGKS  161 (243)
T ss_dssp             HHHHHTCBCGGGCCGGGEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTTSSBTTTTCE
T ss_pred             HhhhccCCChHHCCHhhCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhcCcccCCceeeCCcE
Confidence            6678888899988777899999999985456678899999999999999999999999999999999       999999


Q ss_pred             eccChhhHhh-------------------hh--cceec------CCcEEECCCEEEcCChhhHHHHHHHHHHHhcC
Q 012037          406 ATAHPSVIGK-------------------LT--NEVVN------GTKVVVDGKVITSRGLANVIDFALAIVSKFFG  454 (472)
Q Consensus       406 ~T~~~~~~~~-------------------l~--~~~~~------~~~vv~dg~iiTa~g~~~~~d~al~li~~~~g  454 (472)
                      +|+||...+.                   ++  ...+.      +..+|+|||+|||+|+.+++||++++|+++-.
T Consensus       162 ~T~~~~~~e~~~~~~~~~p~~~~~~l~~~l~~~g~~~~~~~~~~~~~vV~Dg~liT~~g~~s~~d~al~lv~~l~~  237 (243)
T 1rw7_A          162 ITGFTDVGETILGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALKN  237 (243)
T ss_dssp             ECCSCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHCCC-
T ss_pred             EeecCCHHHhhccccccccccccccHHHHHHHcCCEEEcCCCCCCCCEEEeCCEEECCChhHHHHHHHHHHHHHhh
Confidence            9999987665                   33  23444      78899999999999999999999999998743

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*

Probab=99.96  E-value=1.5e-29  Score=241.01  Aligned_cols=171  Identities=16%  Similarity=0.232  Sum_probs=144.7

Q ss_pred             CCEEEEEeC------------CCCCHHHHHHHHHHHHhCCCeEEEEEecCCccee---------------------cCCC
Q 012037          287 MPRVLIPIA------------NGSEEIEIVTIVDILRRAKVDVVVASVERSTQIV---------------------ASQG  333 (472)
Q Consensus       287 ~~~V~il~~------------~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~---------------------s~~G  333 (472)
                      |+||+|++.            +||++.|+..|+++|+++|++|+++|++|+..+.                     ++.+
T Consensus         3 m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~iaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~   82 (244)
T 3kkl_A            3 PKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFN   82 (244)
T ss_dssp             CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEESSSCCCBCTTC--------------------CH
T ss_pred             CCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcCCccccccccCHHHHHHHHHhhHHHH
Confidence            678999987            4899999999999999999999999999873231                     1234


Q ss_pred             cEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc-------CCCCCcee
Q 012037          334 VKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH-------GLLKAKKA  406 (472)
Q Consensus       334 ~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a-------GlL~g~~~  406 (472)
                      .++.++..+++++..+||+||||||.+..+.+..++.+.+||+++++++++|++||+|+++|+++       |||+||++
T Consensus        83 ~~l~~~~~l~~v~~~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a~~~~~g~gll~G~~~  162 (244)
T 3kkl_A           83 KALARIKTANEVNASDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKAI  162 (244)
T ss_dssp             HHHHTCEEGGGCCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTTSSBTTTTCEE
T ss_pred             HHhcCCCChHHCCHhhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhhccccCCceeCCcee
Confidence            56777888999888899999999998544678899999999999999999999999999999999       99999999


Q ss_pred             ccChhhHhh-------------------hhc--ceecC------CcEEECCCEEEcCChhhHHHHHHHHHHHhcCHHH
Q 012037          407 TAHPSVIGK-------------------LTN--EVVNG------TKVVVDGKVITSRGLANVIDFALAIVSKFFGHAR  457 (472)
Q Consensus       407 T~~~~~~~~-------------------l~~--~~~~~------~~vv~dg~iiTa~g~~~~~d~al~li~~~~g~~~  457 (472)
                      |+||...+.                   +++  ..+.+      ..+|+|||+||++|+.++++|++++|+++...+.
T Consensus       163 T~~~~~ee~~~~~~~~~p~~~~~~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~gp~sa~~~a~~lv~~l~~~~~  240 (244)
T 3kkl_A          163 TGFPLEGEIALGVDDILRSRKLTTVERVANKNGAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINALYSVEH  240 (244)
T ss_dssp             CCSCHHHHHHHTTHHHHHHTTCCCHHHHHHTTTCEECCCSSTTSCCEEEETTEEEESSGGGHHHHHHHHHHHHTC---
T ss_pred             cCCCcHHHHhhhhhhhccccccccHHHHHHHCCCEEecCCCCCCCCEEEeCCEEECCChHHHHHHHHHHHHHHhhhhh
Confidence            999987543                   222  34444      6899999999999999999999999999987653

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=99.96  E-value=5.2e-29  Score=255.01  Aligned_cols=170  Identities=22%  Similarity=0.303  Sum_probs=153.4

Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCc---------------ceecCCCcEEeecCCccccCCCcc
Q 012037          286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERST---------------QIVASQGVKIIADKSISDAAESVY  350 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~---------------~v~s~~G~~v~~d~~l~~~~~~~~  350 (472)
                      +++||+|+++|||++.|+..++++|+++||+++++|++++.               .++++.|..+.++..+++++..+|
T Consensus        11 ~~~kv~ill~dg~e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~   90 (396)
T 3uk7_A           11 NSRTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSKY   90 (396)
T ss_dssp             CCCEEEEECCTTEEHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGGC
T ss_pred             cCCeEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCcccC
Confidence            46899999999999999999999999999999999998641               245677999999999999877899


Q ss_pred             cEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc--ceecC----C
Q 012037          351 DLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNG----T  424 (472)
Q Consensus       351 D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~----~  424 (472)
                      |+||||||. +...+..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.+++  ..+.+    +
T Consensus        91 D~livpGG~-~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~  169 (396)
T 3uk7_A           91 DGLVIPGGR-APEYLALTASVVELVKEFSRSGKPIASICHGQLILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPD  169 (396)
T ss_dssp             SEEEECCBS-HHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCCSSTT
T ss_pred             CEEEECCCc-chhhcccCHHHHHHHHHHHHcCCEEEEECchHHHHHhccccCCCEeecCcchHHHHHHCCCEEECCCCCc
Confidence            999999997 4566788999999999999999999999999999999999999999999999999975  23332    3


Q ss_pred             cEEECCCEEEcCChhhHHHHHHHHHHHhcCHH
Q 012037          425 KVVVDGKVITSRGLANVIDFALAIVSKFFGHA  456 (472)
Q Consensus       425 ~vv~dg~iiTa~g~~~~~d~al~li~~~~g~~  456 (472)
                      .+|+|||+|||+|+.+++||++++|+++.|++
T Consensus       170 ~~v~Dg~iiT~~g~~~~~d~al~li~~l~g~~  201 (396)
T 3uk7_A          170 VCVVDGSLITAATYEGHPEFIQLFVKALGGKI  201 (396)
T ss_dssp             CEEEETTEEEESSGGGHHHHHHHHHHHTTCEE
T ss_pred             ceEecCCEEEecCcccHHHHHHHHHHHHhccc
Confidence            48999999999999999999999999999965

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A

Probab=99.96  E-value=1.5e-29  Score=247.64  Aligned_cols=171  Identities=19%  Similarity=0.198  Sum_probs=148.8

Q ss_pred             CCCEEEEEeCC--------------CCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecC--------------C---Cc
Q 012037          286 RMPRVLIPIAN--------------GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVAS--------------Q---GV  334 (472)
Q Consensus       286 ~~~~V~il~~~--------------g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~--------------~---G~  334 (472)
                      ..+||+|++.+              ||++.|+..++++|+++||+|+++|++++ ++...              .   |+
T Consensus        47 g~kkIlivlt~~~~~~~~~g~~~~~G~~~~E~~~p~~vL~~ag~~v~i~S~~g~-~v~~d~~s~~~~~~~~~~~~~~~g~  125 (291)
T 1n57_A           47 GKHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGL-MTKFEYWAMPHKDEKVMPFFEQHKS  125 (291)
T ss_dssp             SSCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHHHHTTCCEEEEESSSC-CCCBCGGGCCTTCTTHHHHHHHHHH
T ss_pred             CCCEEEEEeCCcccccccCCccCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCC-cccccccccccccHHHHHHHHhccc
Confidence            34699999986              79999999999999999999999999997 66522              2   77


Q ss_pred             EEeecCCcccc-----CCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC----CCCCce
Q 012037          335 KIIADKSISDA-----AESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG----LLKAKK  405 (472)
Q Consensus       335 ~v~~d~~l~~~-----~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG----lL~g~~  405 (472)
                      .+.++..++++     +..+||+||||||++..+.+..++.+++||+++++++++|++||+|+++|+++|    ||+||+
T Consensus       126 ~l~~~~~l~~v~~~~~~~~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a~~~~GLL~Gr~  205 (291)
T 1n57_A          126 LFRNPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYS  205 (291)
T ss_dssp             HHHSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGTTSCCTTTTCE
T ss_pred             eecCCccHHHHhhhccCcccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhhcccCccCCCCE
Confidence            88888888874     457899999999974333678899999999999999999999999999998885    999999


Q ss_pred             eccChhhHhhhhc---------------------ceec----CCcEEECCCEEEcCChhhHHHHHHHHHHHhcCHHH
Q 012037          406 ATAHPSVIGKLTN---------------------EVVN----GTKVVVDGKVITSRGLANVIDFALAIVSKFFGHAR  457 (472)
Q Consensus       406 ~T~~~~~~~~l~~---------------------~~~~----~~~vv~dg~iiTa~g~~~~~d~al~li~~~~g~~~  457 (472)
                      +|+||...+.+++                     ..+.    +..+|+|||+|||+|+.+++||++++|+++.|.+.
T Consensus       206 ~Tt~~~~~e~~~~~~~~~~~~~P~~le~~L~~~ga~~~~~~~~~~vV~Dg~lITs~gp~s~~d~al~lve~l~g~~~  282 (291)
T 1n57_A          206 ICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLAAYA  282 (291)
T ss_dssp             ECCCCGGGGGTTTTTTSSSSCCSSCHHHHHHHTTCEECCSSCSCCEEEETTEEEESSGGGHHHHHHHHHHHHHHHHC
T ss_pred             EEeCCCHHHhhhccccccccccchhHHHHHHHCCCEEECCCCCCCEEEeCCEEECCCHHHHHHHHHHHHHHHhCchh
Confidence            9999998877632                     2444    78899999999999999999999999999998764

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*

Probab=99.96  E-value=7.3e-29  Score=236.35  Aligned_cols=170  Identities=16%  Similarity=0.220  Sum_probs=143.8

Q ss_pred             CcEEEEEeC------------CCCcHHHHHHHHHHHHhCCCEEEEEeeCCCccee---------------------ccCC
Q 012037           84 PKKVLVPVG------------FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVE---------------------ASSG  130 (472)
Q Consensus        84 ~~kV~ill~------------~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~---------------------~~~G  130 (472)
                      |+||+|++.            +||+..|+..++++|+++|++|+++|++++.++.                     ++.+
T Consensus         3 m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~iaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~   82 (244)
T 3kkl_A            3 PKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFN   82 (244)
T ss_dssp             CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEESSSCCCBCTTC--------------------CH
T ss_pred             CCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcCCccccccccCHHHHHHHHHhhHHHH
Confidence            789999987            3889999999999999999999999999763231                     1234


Q ss_pred             ceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC-------CCCCCce
Q 012037          131 TRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW-------GLLRRKQ  203 (472)
Q Consensus       131 ~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a-------GlL~g~~  203 (472)
                      ..+.+|.++++++..+||+|+||||......+..++.+.+||+++++++|+|++||+|+ ++|+++       |||+||+
T Consensus        83 ~~l~~~~~l~~v~~~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~-~~La~a~~~~~g~gll~G~~  161 (244)
T 3kkl_A           83 KALARIKTANEVNASDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGP-LLFDGLIDIKTTRPLIEGKA  161 (244)
T ss_dssp             HHHHTCEEGGGCCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGG-GGGTTCBCTTTSSBTTTTCE
T ss_pred             HHhcCCCChHHCCHhhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHH-HHHHHhhccccCCceeCCce
Confidence            56778889999988899999999997545668899999999999999999999999975 489988       9999999


Q ss_pred             eecCcchhcc-------------------CCC--Ccccc------CcEEEeCCEEeCCCCCChHHHHHHHHHHHhCch
Q 012037          204 ITCHPAFTDK-------------------LPT--FWAVK------SNIHVSGEVTTSRGPGTSFEFALCLVEQLFGES  254 (472)
Q Consensus       204 ~T~~~~~~~~-------------------l~~--~~~~~------~~~v~Dg~iiTa~g~~~~~dlal~li~~~~g~~  254 (472)
                      +|+||...+.                   +++  +.|++      ..+|+|||+||++|+.++.+|+++||+++.+.+
T Consensus       162 ~T~~~~~ee~~~~~~~~~p~~~~~~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~gp~sa~~~a~~lv~~l~~~~  239 (244)
T 3kkl_A          162 ITGFPLEGEIALGVDDILRSRKLTTVERVANKNGAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINALYSVE  239 (244)
T ss_dssp             ECCSCHHHHHHHTTHHHHHHTTCCCHHHHHHTTTCEECCCSSTTSCCEEEETTEEEESSGGGHHHHHHHHHHHHTC--
T ss_pred             ecCCCcHHHHhhhhhhhccccccccHHHHHHHCCCEEecCCCCCCCCEEEeCCEEECCChHHHHHHHHHHHHHHhhhh
Confidence            9999997542                   333  55665      479999999999999999999999999998754

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0

Probab=99.96  E-value=9.5e-29  Score=235.68  Aligned_cols=168  Identities=20%  Similarity=0.200  Sum_probs=142.9

Q ss_pred             CCEEEEEeCC------------CCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecC----------------------C
Q 012037          287 MPRVLIPIAN------------GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVAS----------------------Q  332 (472)
Q Consensus       287 ~~~V~il~~~------------g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~----------------------~  332 (472)
                      |+||+|++.+            ||++.|+..|+++|+++||+|+++|++|+ .+...                      .
T Consensus         9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~g~-~~~d~~s~~~~~~~~~~~~~~~~~~~~~   87 (247)
T 3n7t_A            9 PRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASETGT-FGWDEHSLTQEYLSKEDEKVLHSEHNHF   87 (247)
T ss_dssp             CSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESSSC-CCBCSGGGSGGGCCHHHHHHHTCSSCHH
T ss_pred             CCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCCCC-cccCcccccccccCHHHHHHHHhhhHHH
Confidence            6899999987            89999999999999999999999999987 43221                      1


Q ss_pred             CcEEee-cCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc------CCCCCce
Q 012037          333 GVKIIA-DKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH------GLLKAKK  405 (472)
Q Consensus       333 G~~v~~-d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a------GlL~g~~  405 (472)
                      +..+.+ +..+++++..+||+||||||++....+..++.+.+||+++++++++|++||+|+++|+++      |||+||+
T Consensus        88 ~~~l~~~~~~l~~v~~~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a~~~~g~gll~G~~  167 (247)
T 3n7t_A           88 MEKMNKQVFKAGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGIHDENGDSVIKDKT  167 (247)
T ss_dssp             HHHHHHCCEEGGGSCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGCBCTTSSBTTTTCE
T ss_pred             HHHHhccCCCHHHCChhhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHhhcccCCccccCce
Confidence            223555 778889888899999999998433668899999999999999999999999999999999      9999999


Q ss_pred             eccChhhHhh-------------------hhc--ceecC------CcEEECCCEEEcCChhhHHHHHHHHHHHhcCH
Q 012037          406 ATAHPSVIGK-------------------LTN--EVVNG------TKVVVDGKVITSRGLANVIDFALAIVSKFFGH  455 (472)
Q Consensus       406 ~T~~~~~~~~-------------------l~~--~~~~~------~~vv~dg~iiTa~g~~~~~d~al~li~~~~g~  455 (472)
                      +|+||...+.                   +++  ..+.+      ..+|+|||+||++|+.++.+|++++|+++...
T Consensus       168 ~T~~~~~ee~~~~~~~~~p~~~~~~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~~p~sa~~~a~~lv~~L~~~  244 (247)
T 3n7t_A          168 VTGFTTKGEIMIKVIDKMREDHLHTIADMAQTANAEYVPPEDPWDDFCKVDGRIVTGANPQSATNTARDTIKVYEGI  244 (247)
T ss_dssp             ECCCCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHHH
T ss_pred             ecCCCcHHHhhhhhhhhccccchhhHHHHHHHCCCEEecCCcCCCceEEEcCCEEECCChHHHHHHHHHHHHHHhhh
Confidence            9999987544                   222  34443      58999999999999999999999999998643

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A

Probab=99.95  E-value=3.2e-29  Score=237.95  Aligned_cols=166  Identities=24%  Similarity=0.325  Sum_probs=140.9

Q ss_pred             CCCEEEEEeC-----CCCCHHHHHHHHHHHHhCCCeEEEEEecCCcc--e---------ecCCCcEEeec-------CCc
Q 012037          286 RMPRVLIPIA-----NGSEEIEIVTIVDILRRAKVDVVVASVERSTQ--I---------VASQGVKIIAD-------KSI  342 (472)
Q Consensus       286 ~~~~V~il~~-----~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~--v---------~s~~G~~v~~d-------~~l  342 (472)
                      .|+||+|+++     +||++.|++.++++|+++||+|+++|++++ +  +         .++.|+.+.++       ..+
T Consensus         5 ~m~kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g~-~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l   83 (232)
T 1vhq_A            5 TMKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQ-QVDVINHLTGEAMTETRNVLIEAARITRGEIRPL   83 (232)
T ss_dssp             -CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSB-CSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEG
T ss_pred             cCCeEEEEEccCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCC-CCcccccccccchhhhhhhhHHHHHhhhcCCCCH
Confidence            4689999999     999999999999999999999999999986 4  3         77889888887       778


Q ss_pred             cccCCCcccEEEEcCCCcchh----------cccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCC-CceeccC-h
Q 012037          343 SDAAESVYDLIILPGGVAGAE----------RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLK-AKKATAH-P  410 (472)
Q Consensus       343 ~~~~~~~~D~livpGG~~~~~----------~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~-g~~~T~~-~  410 (472)
                      ++++.++||+||||||.+...          .+..++.+++||++++++|++|++||+|+++|+++  |+ ||++|+| |
T Consensus        84 ~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a--L~~Gr~~Tth~~  161 (232)
T 1vhq_A           84 AQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKI--FDFPLRLTIGTD  161 (232)
T ss_dssp             GGCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHH--CSSCCEECCCSC
T ss_pred             HHcCcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHH--hcCCCEEeccCC
Confidence            887667899999999974322          12358999999999999999999999999999999  79 9999999 5


Q ss_pred             -hhHhhhhc--ceecC----CcEEE-CCCEEEcCChhhHHHHHHHHHHHhcCHHHH
Q 012037          411 -SVIGKLTN--EVVNG----TKVVV-DGKVITSRGLANVIDFALAIVSKFFGHART  458 (472)
Q Consensus       411 -~~~~~l~~--~~~~~----~~vv~-dg~iiTa~g~~~~~d~al~li~~~~g~~~A  458 (472)
                       ...+.|++  ..+.+    ..+++ |||+|||+    ++||++++|++++|.+.+
T Consensus       162 ~~~~~~l~~~g~~~~~~~~~~~~vd~dg~liTs~----~~d~al~lv~~~~G~~~~  213 (232)
T 1vhq_A          162 IDTAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTP----AYMLAQNIAEAASGIDKL  213 (232)
T ss_dssp             HHHHHHHHHTTCEECCCCTTCCEEETTTTEEEEC----GGGTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCEEecCCCCceEEecCCCEEECC----CHHHHHHHHHHHcCHHHH
Confidence             67788876  34433    34444 59999997    789999999999999753

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A

Probab=99.95  E-value=8.6e-29  Score=236.53  Aligned_cols=167  Identities=17%  Similarity=0.196  Sum_probs=143.2

Q ss_pred             CcEEEEEeC------------CCCcHHHHHHHHHHHHhCCCEEEEEeeCCCccee---c-------------------cC
Q 012037           84 PKKVLVPVG------------FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVE---A-------------------SS  129 (472)
Q Consensus        84 ~~kV~ill~------------~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~---~-------------------~~  129 (472)
                      |+||+|+++            +||+..|+..++++|+++||+|+++|++++ ++.   +                   +.
T Consensus         3 m~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~ag~~v~~~s~~g~-~~~d~~s~~~~~~~~~~~~~~~~~~~~~   81 (243)
T 1rw7_A            3 PKKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVSETGK-FGWDEHSLAKDFLNGQDETDFKNKDSDF   81 (243)
T ss_dssp             CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSSC-CCBCGGGGSTTTSCHHHHHHHHCTTSHH
T ss_pred             CceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHHCCCEEEEECCCCC-CCcCcccccccccChHHHHHHHhhhHHH
Confidence            579999997            689999999999999999999999999976 432   1                   23


Q ss_pred             CceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCC-------CCCCc
Q 012037          130 GTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG-------LLRRK  202 (472)
Q Consensus       130 G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aG-------lL~g~  202 (472)
                      |..+.++..+++++..+||+||||||......+..++.+.+||+++++++|+|++||+|+ ++|+++|       ||+||
T Consensus        82 g~~l~~~~~l~~v~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~-~~La~ag~~~~g~~lL~G~  160 (243)
T 1rw7_A           82 NKTLAKIKTPKEVNADDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGP-AIFDGLTDKKTGRPLIEGK  160 (243)
T ss_dssp             HHHHHTCBCGGGCCGGGEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGG-GGGTTCBCTTTSSBTTTTC
T ss_pred             HhhhccCCChHHCCHhhCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCH-HHHHhcCcccCCceeeCCc
Confidence            557888889998877789999999996545567889999999999999999999999975 5899999       99999


Q ss_pred             eeecCcchhcc-------------------CC--CCccc------cCcEEEeCCEEeCCCCCChHHHHHHHHHHHhC
Q 012037          203 QITCHPAFTDK-------------------LP--TFWAV------KSNIHVSGEVTTSRGPGTSFEFALCLVEQLFG  252 (472)
Q Consensus       203 ~~T~~~~~~~~-------------------l~--~~~~~------~~~~v~Dg~iiTa~g~~~~~dlal~li~~~~g  252 (472)
                      ++|+||...+.                   |+  ...++      +..+|+|||+|||+|+.+++||+++||+++..
T Consensus       161 ~~T~~~~~~e~~~~~~~~~p~~~~~~l~~~l~~~g~~~~~~~~~~~~~vV~Dg~liT~~g~~s~~d~al~lv~~l~~  237 (243)
T 1rw7_A          161 SITGFTDVGETILGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALKN  237 (243)
T ss_dssp             EECCSCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHCCC-
T ss_pred             EEeecCCHHHhhccccccccccccccHHHHHHHcCCEEEcCCCCCCCCEEEeCCEEECCChhHHHHHHHHHHHHHhh
Confidence            99999997665                   22  24555      67799999999999999999999999998743

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A

Probab=99.95  E-value=3.7e-28  Score=237.70  Aligned_cols=171  Identities=16%  Similarity=0.253  Sum_probs=146.2

Q ss_pred             CcEEEEEeCC--------------CCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceecc--------------C---Cce
Q 012037           84 PKKVLVPVGF--------------GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEAS--------------S---GTR  132 (472)
Q Consensus        84 ~~kV~ill~~--------------g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~--------------~---G~~  132 (472)
                      .+||+|++.+              ||+..|+..++++|+++||+|++++++++ ++...              .   |..
T Consensus        48 ~kkIlivlt~~~~~~~~~g~~~~~G~~~~E~~~p~~vL~~ag~~v~i~S~~g~-~v~~d~~s~~~~~~~~~~~~~~~g~~  126 (291)
T 1n57_A           48 KHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGL-MTKFEYWAMPHKDEKVMPFFEQHKSL  126 (291)
T ss_dssp             SCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHHHHTTCCEEEEESSSC-CCCBCGGGCCTTCTTHHHHHHHHHHH
T ss_pred             CCEEEEEeCCcccccccCCccCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCC-cccccccccccccHHHHHHHHhccce
Confidence            4699999986              79999999999999999999999999976 66522              2   677


Q ss_pred             eeeCCCcCCC-----CCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC----CCCCCce
Q 012037          133 LVADTSISNC-----SHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW----GLLRRKQ  203 (472)
Q Consensus       133 v~~d~~~~~~-----~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a----GlL~g~~  203 (472)
                      +.++..++++     +..+||+||||||.+....+..++.+.+||+++++++|+|++||+|+. +|+++    |||+||+
T Consensus       127 l~~~~~l~~v~~~~~~~~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~-~La~a~~~~GLL~Gr~  205 (291)
T 1n57_A          127 FRNPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPA-AFLALRHGDNPLNGYS  205 (291)
T ss_dssp             HHSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGGGGTTSCCTTTTCE
T ss_pred             ecCCccHHHHhhhccCcccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccHH-HHHhhcccCccCCCCE
Confidence            8888888773     456899999999954443688899999999999999999999999754 67776    5999999


Q ss_pred             eecCcchhccCCC---------------------Cccc----cCcEEEeCCEEeCCCCCChHHHHHHHHHHHhCchhH
Q 012037          204 ITCHPAFTDKLPT---------------------FWAV----KSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVA  256 (472)
Q Consensus       204 ~T~~~~~~~~l~~---------------------~~~~----~~~~v~Dg~iiTa~g~~~~~dlal~li~~~~g~~~a  256 (472)
                      +||||...+.+++                     +.++    +..+|+|||+|||+|+.+++||+++||+++.|.+..
T Consensus       206 ~Tt~~~~~e~~~~~~~~~~~~~P~~le~~L~~~ga~~~~~~~~~~vV~Dg~lITs~gp~s~~d~al~lve~l~g~~~~  283 (291)
T 1n57_A          206 ICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLAAYAG  283 (291)
T ss_dssp             ECCCCGGGGGTTTTTTSSSSCCSSCHHHHHHHTTCEECCSSCSCCEEEETTEEEESSGGGHHHHHHHHHHHHHHHHCC
T ss_pred             EEeCCCHHHhhhccccccccccchhHHHHHHHCCCEEECCCCCCCEEEeCCEEECCCHHHHHHHHHHHHHHHhCchhh
Confidence            9999999887642                     3455    678999999999999999999999999999987654

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0

Probab=99.95  E-value=5.4e-28  Score=230.48  Aligned_cols=169  Identities=20%  Similarity=0.212  Sum_probs=141.9

Q ss_pred             CcEEEEEeCC------------CCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceecc---------------------CC
Q 012037           84 PKKVLVPVGF------------GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEAS---------------------SG  130 (472)
Q Consensus        84 ~~kV~ill~~------------g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~---------------------~G  130 (472)
                      |+||+|++.+            ||+..|+..++++|+++|++|+++|++++.++...                     .+
T Consensus         9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~   88 (247)
T 3n7t_A            9 PRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHFM   88 (247)
T ss_dssp             CSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESSSCCCBCSGGGSGGGCCHHHHHHHTCSSCHHH
T ss_pred             CCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCCCCcccCcccccccccCHHHHHHHHhhhHHHH
Confidence            7899999987            88899999999999999999999999876333211                     11


Q ss_pred             ceeee-CCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC------CCCCCce
Q 012037          131 TRLVA-DTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW------GLLRRKQ  203 (472)
Q Consensus       131 ~~v~~-d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a------GlL~g~~  203 (472)
                      ..+.. +..+++++..+||+||||||+.....+..++.+.+||+++++++|+|++||+|+. +|+++      |||+||+
T Consensus        89 ~~l~~~~~~l~~v~~~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~-~La~a~~~~g~gll~G~~  167 (247)
T 3n7t_A           89 EKMNKQVFKAGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPA-MLPGIHDENGDSVIKDKT  167 (247)
T ss_dssp             HHHHHCCEEGGGSCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGGGCBCTTSSBTTTTCE
T ss_pred             HHHhccCCCHHHCChhhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHH-HHHHhhcccCCccccCce
Confidence            23555 7888898888999999999964335688999999999999999999999999754 89998      9999999


Q ss_pred             eecCcchhcc-------------------CCC--Ccccc------CcEEEeCCEEeCCCCCChHHHHHHHHHHHhCc
Q 012037          204 ITCHPAFTDK-------------------LPT--FWAVK------SNIHVSGEVTTSRGPGTSFEFALCLVEQLFGE  253 (472)
Q Consensus       204 ~T~~~~~~~~-------------------l~~--~~~~~------~~~v~Dg~iiTa~g~~~~~dlal~li~~~~g~  253 (472)
                      +|+||...+.                   +++  +.|++      ..+|+|||+||++|+.++.+|++++|+++.+.
T Consensus       168 ~T~~~~~ee~~~~~~~~~p~~~~~~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~~p~sa~~~a~~lv~~L~~~  244 (247)
T 3n7t_A          168 VTGFTTKGEIMIKVIDKMREDHLHTIADMAQTANAEYVPPEDPWDDFCKVDGRIVTGANPQSATNTARDTIKVYEGI  244 (247)
T ss_dssp             ECCCCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHHH
T ss_pred             ecCCCcHHHhhhhhhhhccccchhhHHHHHHHCCCEEecCCcCCCceEEEcCCEEECCChHHHHHHHHHHHHHHhhh
Confidence            9999997654                   222  55655      47999999999999999999999999998653

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A

Probab=99.94  E-value=6e-28  Score=229.15  Aligned_cols=180  Identities=20%  Similarity=0.269  Sum_probs=143.8

Q ss_pred             CCCcEEEEEeC-----CCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcc--e---------eccCCceeeeC-------CC
Q 012037           82 VPPKKVLVPVG-----FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLE--V---------EASSGTRLVAD-------TS  138 (472)
Q Consensus        82 ~~~~kV~ill~-----~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~--v---------~~~~G~~v~~d-------~~  138 (472)
                      +.|+||+|+++     +||+..|+..++++|+++||+|+++|++++ +  +         +++.|+.+.++       ..
T Consensus         4 ~~m~kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g~-~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~   82 (232)
T 1vhq_A            4 ITMKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQ-QVDVINHLTGEAMTETRNVLIEAARITRGEIRP   82 (232)
T ss_dssp             --CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSB-CSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEE
T ss_pred             ccCCeEEEEEccCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCC-CCcccccccccchhhhhhhhHHHHHhhhcCCCC
Confidence            34789999999     999999999999999999999999999976 4  3         67788888887       77


Q ss_pred             cCCCCCCcccEEEEcCCccccc----------cccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCC-CceeecC
Q 012037          139 ISNCSHQVFDLIALPGGMPGSV----------RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLR-RKQITCH  207 (472)
Q Consensus       139 ~~~~~~~~~D~vivpGG~~~~~----------~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~-g~~~T~~  207 (472)
                      +++++..+||+||||||.....          .+..++.+.+||+++++++|+|++||+| .++|+++  |+ ||++|||
T Consensus        83 l~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G-~~~La~a--L~~Gr~~Tth  159 (232)
T 1vhq_A           83 LAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIA-PAMLPKI--FDFPLRLTIG  159 (232)
T ss_dssp             GGGCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTG-GGGHHHH--CSSCCEECCC
T ss_pred             HHHcCcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHH-HHHHHHH--hcCCCEEecc
Confidence            8887667899999999964322          2234899999999999999999999997 5589988  79 9999999


Q ss_pred             -c-chhccCCC--Ccccc---CcEEEe--CCEEeCCCCCChHHHHHHHHHHHhCchhHHhhhhccccccCCcc
Q 012037          208 -P-AFTDKLPT--FWAVK---SNIHVS--GEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNS  271 (472)
Q Consensus       208 -~-~~~~~l~~--~~~~~---~~~v~D--g~iiTa~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~~~~~~  271 (472)
                       | .+.+.|++  ..+++   ..+++|  ||+|||+    ++||+++||++++|.+.+  +.+.+.+.+++.+
T Consensus       160 ~~~~~~~~l~~~g~~~~~~~~~~~~vd~dg~liTs~----~~d~al~lv~~~~G~~~~--~~~~~~~~~~~~~  226 (232)
T 1vhq_A          160 TDIDTAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTP----AYMLAQNIAEAASGIDKL--VSRVLVLAEEGGS  226 (232)
T ss_dssp             SCHHHHHHHHHTTCEECCCCTTCCEEETTTTEEEEC----GGGTCSSHHHHHHHHHHH--HHHHHHHHC----
T ss_pred             CCHHHHHHHHHcCCEEecCCCCceEEecCCCEEECC----CHHHHHHHHHHHcCHHHH--HHHHHHhhhccCC
Confidence             5 67777876  56655   355555  9999996    889999999999999753  3344445544433

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}

Probab=99.94  E-value=4.1e-27  Score=223.66  Aligned_cols=167  Identities=20%  Similarity=0.238  Sum_probs=135.4

Q ss_pred             CCCEEEEEeC-----CCCCHHHHHHHHHHHHhCCCeEEEEEecCCc----------ceecCCCcEEeec-------CCcc
Q 012037          286 RMPRVLIPIA-----NGSEEIEIVTIVDILRRAKVDVVVASVERST----------QIVASQGVKIIAD-------KSIS  343 (472)
Q Consensus       286 ~~~~V~il~~-----~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~----------~v~s~~G~~v~~d-------~~l~  343 (472)
                      +++||+|++.     |||+++|+..|+++|+++||+|+++|++++.          ++.++.|+.+.++       ..++
T Consensus        22 M~kkV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~  101 (242)
T 3l3b_A           22 MALNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIE  101 (242)
T ss_dssp             --CEEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGG
T ss_pred             ccCEEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChH
Confidence            3479999998     9999999999999999999999999998851          4667788888887       6788


Q ss_pred             ccCCCcccEEEEcCCCcchhc-----------ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC-CCCCceeccChh
Q 012037          344 DAAESVYDLIILPGGVAGAER-----------LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG-LLKAKKATAHPS  411 (472)
Q Consensus       344 ~~~~~~~D~livpGG~~~~~~-----------~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG-lL~g~~~T~~~~  411 (472)
                      +++.++||+||||||.+....           +..++.+++||+++++++++|++||+|+++|+++| ||+||++|+||.
T Consensus       102 dv~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag~lL~Gr~~T~~~~  181 (242)
T 3l3b_A          102 QIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALLKDIAKVKVTIGED  181 (242)
T ss_dssp             GCCGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHHTTTCCCEECCCC-
T ss_pred             HCCcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhCcccCCCEEEecCC
Confidence            887789999999999743221           35689999999999999999999999999999999 999999999999


Q ss_pred             hHhhhhc--ceecC---CcEEEC--CCEEEcCChhhHHHHHHHHHHHhcCHH
Q 012037          412 VIGKLTN--EVVNG---TKVVVD--GKVITSRGLANVIDFALAIVSKFFGHA  456 (472)
Q Consensus       412 ~~~~l~~--~~~~~---~~vv~d--g~iiTa~g~~~~~d~al~li~~~~g~~  456 (472)
                      ....+++  ..+.+   +.+|+|  ||+||+++...    +..|.+.+.|.+
T Consensus       182 ~~~~l~~~Ga~~~~~~~~~vVvD~~g~liTs~a~~~----~~~~~e~~~g~~  229 (242)
T 3l3b_A          182 SNGLIDKMGGVHVDCPTIKSVKDDVNRIFSCSAYMR----NDSLYNVYLGIQ  229 (242)
T ss_dssp             ---CHHHHTCEECCCCTTCCEEETTTTEEEECGGGS----CCCHHHHHHHHH
T ss_pred             hHHHHHHCCCEEEcCCCCeEEEECCCCEEECcCccc----CCCHHHHHhCHH
Confidence            8777765  44555   578888  99999997754    344555555543

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}

Probab=99.93  E-value=1.6e-26  Score=219.61  Aligned_cols=165  Identities=15%  Similarity=0.135  Sum_probs=134.2

Q ss_pred             CcEEEEEeC-----CCCcHHHHHHHHHHHHhCCCEEEEEeeCCC----------cceeccCCceeeeC-------CCcCC
Q 012037           84 PKKVLVPVG-----FGTEEMEAVIIVDVLRRAGAQVTMASVEPQ----------LEVEASSGTRLVAD-------TSISN  141 (472)
Q Consensus        84 ~~kV~ill~-----~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g----------~~v~~~~G~~v~~d-------~~~~~  141 (472)
                      ++||+|++.     |||+..|+..++++|+++||+|+++|+++|          .+++++.|+.+.+|       .++++
T Consensus        23 ~kkV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~d  102 (242)
T 3l3b_A           23 ALNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIEQ  102 (242)
T ss_dssp             -CEEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGGG
T ss_pred             cCEEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChHH
Confidence            489999998     999999999999999999999999999875          24667788888888       67888


Q ss_pred             CCCCcccEEEEcCCcccccc-----------ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCC-CCCCceeecCcc
Q 012037          142 CSHQVFDLIALPGGMPGSVR-----------LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG-LLRRKQITCHPA  209 (472)
Q Consensus       142 ~~~~~~D~vivpGG~~~~~~-----------l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aG-lL~g~~~T~~~~  209 (472)
                      ++..+||+|+||||......           +..++.+.+||+++++++|+|++||+|+ ++|+++| ||+||++|+||.
T Consensus       103 v~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~-~~La~ag~lL~Gr~~T~~~~  181 (242)
T 3l3b_A          103 IRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISP-AVVVALLKDIAKVKVTIGED  181 (242)
T ss_dssp             CCGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHH-HHHHHHHTTTCCCEECCCC-
T ss_pred             CCcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHH-HHHHHhCcccCCCEEEecCC
Confidence            87779999999999643221           3568999999999999999999999975 5899999 999999999999


Q ss_pred             hhccCCC--Ccccc---CcEEEe--CCEEeCCCCCChHHHHHHHHHHHhCc
Q 012037          210 FTDKLPT--FWAVK---SNIHVS--GEVTTSRGPGTSFEFALCLVEQLFGE  253 (472)
Q Consensus       210 ~~~~l~~--~~~~~---~~~v~D--g~iiTa~g~~~~~dlal~li~~~~g~  253 (472)
                      ....+++  +.|++   +++|+|  ||+||+.+...+    ..+.|-..|.
T Consensus       182 ~~~~l~~~Ga~~~~~~~~~vVvD~~g~liTs~a~~~~----~~~~e~~~g~  228 (242)
T 3l3b_A          182 SNGLIDKMGGVHVDCPTIKSVKDDVNRIFSCSAYMRN----DSLYNVYLGI  228 (242)
T ss_dssp             ---CHHHHTCEECCCCTTCCEEETTTTEEEECGGGSC----CCHHHHHHHH
T ss_pred             hHHHHHHCCCEEEcCCCCeEEEECCCCEEECcCcccC----CCHHHHHhCH
Confidence            8877776  67777   579999  999999977532    3344444444

>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3

Probab=99.89  E-value=1.2e-22  Score=217.79  Aligned_cols=173  Identities=14%  Similarity=0.111  Sum_probs=148.1

Q ss_pred             CCCCCCCCCCCCCCccccccCCCCCCCCCCC--CCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceecc
Q 012037           51 KNSAPTRRRSSKPTKNLTLTTPTTPEATNSA--VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEAS  128 (472)
Q Consensus        51 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~--~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~  128 (472)
                      .++.++||+||            +......+  +.++||+||++|||+..|+..++++|+.+||+++++++++| +|+++
T Consensus       511 ~~~~~~~~~ls------------~~~~~~~~~~m~~rkVaILl~dGfe~~El~~p~dvL~~AG~~V~ivS~~gg-~V~ss  577 (715)
T 1sy7_A          511 PNHGRKTINLS------------QTEFPPATPTIKSRRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRS-KVTAA  577 (715)
T ss_dssp             CCCCCCCSSCS------------GGGCCCSSSCCTTCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSS-CEEBT
T ss_pred             cCCCCCCcccc------------cccCCCCCCCCCCCEEEEEEcCCCCHHHHHHHHHHHHhcCCEEEEEECCCC-ceecC
Confidence            37888999998            44443333  66799999999999999999999999999999999999987 89999


Q ss_pred             CCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC-CCCCCceeecC
Q 012037          129 SGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW-GLLRRKQITCH  207 (472)
Q Consensus       129 ~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a-GlL~g~~~T~~  207 (472)
                      +|..+.+|.+++++++.+||+||||||..+...+..++.+++||+++++++|+|++||+| .++|+++ ||.+-+.+.  
T Consensus       578 ~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~~l~~~~~l~~~Lr~~~~~gK~IaAIC~G-~~lLA~AlGL~~L~~aG--  654 (715)
T 1sy7_A          578 NGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLSKNGRALHWIREAFGHLKAIGATGEA-VDLVAKAIALPQVTVSS--  654 (715)
T ss_dssp             TSCEECCSEETTTCCGGGSSEEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTH-HHHHHHHHCCTTSCCCC--
T ss_pred             CCceEecccccccCCcccCCEEEEcCCcccHhhhccCHHHHHHHHHHHhCCCEEEEECHH-HHHHHHccCcHhHHhcC--
Confidence            999999999999988789999999999545666788999999999999999999999996 5689999 994333221  


Q ss_pred             cchhccCCCCccccCcEEEeCCEEeCCCCC------------ChHHHHHHHHHHHhC
Q 012037          208 PAFTDKLPTFWAVKSNIHVSGEVTTSRGPG------------TSFEFALCLVEQLFG  252 (472)
Q Consensus       208 ~~~~~~l~~~~~~~~~~v~Dg~iiTa~g~~------------~~~dlal~li~~~~g  252 (472)
                                   .+.+|+|||+||++|+.            +..+|+.++++.+..
T Consensus       655 -------------a~~VVvDg~lITs~gp~~~~l~~~~~i~~s~~~fa~~fi~~L~~  698 (715)
T 1sy7_A          655 -------------EAEVHESYGVVTLKKVKPESFTDAVKIAKGAAGFLGEFFYAIAQ  698 (715)
T ss_dssp             -------------SSSCEEETTEEEESSCCTTTTTSCCCCSTTCSSHHHHHHHHHHT
T ss_pred             -------------CCcEEEeCCEEECCCCcccccccccccccCHHHHHHHHHHHHHc
Confidence                         26799999999999986            667788888888754

>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3

Probab=99.85  E-value=4.7e-21  Score=205.57  Aligned_cols=152  Identities=19%  Similarity=0.224  Sum_probs=133.6

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ  366 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~  366 (472)
                      ++||+|+++|||++.|+..++++|+.+||+++++|++++ +|+++.|+.+.++..+++++..+||+||||||..+...+.
T Consensus       534 ~rkVaILl~dGfe~~El~~p~dvL~~AG~~V~ivS~~gg-~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~~l~  612 (715)
T 1sy7_A          534 SRRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRS-KVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLS  612 (715)
T ss_dssp             TCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSS-CEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHHH
T ss_pred             CCEEEEEEcCCCCHHHHHHHHHHHHhcCCEEEEEECCCC-ceecCCCceEecccccccCCcccCCEEEEcCCcccHhhhc
Confidence            479999999999999999999999999999999999998 9999999999999999988767899999999954456677


Q ss_pred             ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc-CCCCCceeccChhhHhhhhcceecCCcEEECCCEEEcCChh------
Q 012037          367 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH-GLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLA------  439 (472)
Q Consensus       367 ~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a-GlL~g~~~T~~~~~~~~l~~~~~~~~~vv~dg~iiTa~g~~------  439 (472)
                      .++.+++||+++++++++|++||+|+++|+++ ||.+-+.+.               ...+|+|||+||++|+.      
T Consensus       613 ~~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~AlGL~~L~~aG---------------a~~VVvDg~lITs~gp~~~~l~~  677 (715)
T 1sy7_A          613 KNGRALHWIREAFGHLKAIGATGEAVDLVAKAIALPQVTVSS---------------EAEVHESYGVVTLKKVKPESFTD  677 (715)
T ss_dssp             TCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHCCTTSCCCC---------------SSSCEEETTEEEESSCCTTTTTS
T ss_pred             cCHHHHHHHHHHHhCCCEEEEECHHHHHHHHccCcHhHHhcC---------------CCcEEEeCCEEECCCCccccccc
Confidence            89999999999999999999999999999999 994433221               16799999999999986      


Q ss_pred             ------hHHHHHHHHHHHhcC
Q 012037          440 ------NVIDFALAIVSKFFG  454 (472)
Q Consensus       440 ------~~~d~al~li~~~~g  454 (472)
                            +..+|+.++++.+..
T Consensus       678 ~~~i~~s~~~fa~~fi~~L~~  698 (715)
T 1sy7_A          678 AVKIAKGAAGFLGEFFYAIAQ  698 (715)
T ss_dssp             CCCCSTTCSSHHHHHHHHHHT
T ss_pred             ccccccCHHHHHHHHHHHHHc
Confidence                  556788888877654

>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...

Probab=99.84  E-value=1.7e-20  Score=199.07  Aligned_cols=135  Identities=13%  Similarity=0.101  Sum_probs=123.6

Q ss_pred             CCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceecc
Q 012037           49 QPKNSAPTRRRSSKPTKNLTLTTPTTPEATNSAVPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEAS  128 (472)
Q Consensus        49 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~  128 (472)
                      .+.++.++||+||            +......++.++||+||+.|||+..|+..++++|+++|++|+++|+++| .|+++
T Consensus       577 ~~~~~~~~~~~ls------------~~~~~~~ti~grKVaILlaDGfEe~El~~pvdaLr~AG~~V~vVS~~~g-~V~gs  643 (753)
T 3ttv_A          577 PDVNGLKKDPSLS------------LYAIPDGDVKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMG-EVTAD  643 (753)
T ss_dssp             CCBTTBSCCGGGC------------SSSSCCCCCTTCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSS-EEECT
T ss_pred             CCCCCCCCCcccc------------ccCCCCCCCCCCEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEEcCCC-eEEeC
Confidence            3445778899998            6666656788999999999999999999999999999999999999988 89999


Q ss_pred             CCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCC
Q 012037          129 SGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLL  199 (472)
Q Consensus       129 ~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL  199 (472)
                      +|..+.+|.+++++++.+||+|+||||  +...++.++.+++||+++++++|+|++||+|+. +|+++||-
T Consensus       644 ~G~~V~aD~t~~~v~s~~fDALVVPGG--g~~~Lr~d~~vl~~Vre~~~~gKpIAAIC~Gp~-lLa~AGL~  711 (753)
T 3ttv_A          644 DGTVLPIAATFAGAPSLTVDAVIVPCG--NIADIADNGDANYYLMEAYKHLKPIALAGDARK-FKATIKIA  711 (753)
T ss_dssp             TSCEEECCEETTTSCGGGCSEEEECCS--CGGGTTTCHHHHHHHHHHHHTTCCEEEEGGGGG-GGGGGTCC
T ss_pred             CCCEEecccchhhCCCcCCCEEEECCC--ChHHhhhCHHHHHHHHHHHhcCCeEEEECchHH-HHHHcCCC
Confidence            999999999999999889999999999  677799999999999999999999999999765 89999984

>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*

Probab=99.76  E-value=5.8e-18  Score=179.44  Aligned_cols=149  Identities=15%  Similarity=0.082  Sum_probs=128.1

Q ss_pred             CCCCCCCCCCCCccccccCCCCCCCCCCCCCCcEEEEEeC--CCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCC
Q 012037           53 SAPTRRRSSKPTKNLTLTTPTTPEATNSAVPPKKVLVPVG--FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSG  130 (472)
Q Consensus        53 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~kV~ill~--~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G  130 (472)
                      +.++||+||            +..+...++.++||+||+.  +||+..|+..++++|+++|++|.+++++.| .      
T Consensus       510 ~~~~~~~ls------------~~~~~~~~l~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g-~------  570 (688)
T 2iuf_A          510 HDNTTAHIG------------AFGEKLAKLDGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXA-N------  570 (688)
T ss_dssp             CCCCCTTCS------------SSSSCCSCCTTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCC-T------
T ss_pred             CCCCCcccc------------cCcCCCCCCCCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCC-c------
Confidence            346899998            6666566788899999999  999999999999999999999999999865 2      


Q ss_pred             ceeeeCCCcCCCCCCcccEEEEcCCccc----------------cccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhh
Q 012037          131 TRLVADTSISNCSHQVFDLIALPGGMPG----------------SVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLL  194 (472)
Q Consensus       131 ~~v~~d~~~~~~~~~~~D~vivpGG~~~----------------~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa  194 (472)
                         .+|.++++.++.+||+|+||||..+                ...|..++++++||++++++||+|++||+|++ +|.
T Consensus       571 ---~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~-vL~  646 (688)
T 2iuf_A          571 ---NVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEPSAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSD-ALE  646 (688)
T ss_dssp             ---TCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHH-HHH
T ss_pred             ---ccccchhcCCccccCeEEecCCCcccccccccccccccccchhhcccChHHHHHHHHHHHcCCEEEEECchHH-HHH
Confidence               8899999999999999999999766                67799999999999999999999999999877 899


Q ss_pred             cCCCCCCceeecCcchhccCCCCccccCcEEEeCCEEeCCCCCChHHHHHHHHHHHh
Q 012037          195 PWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLF  251 (472)
Q Consensus       195 ~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~v~Dg~iiTa~g~~~~~dlal~li~~~~  251 (472)
                      ++|+..                         .|+++||+..+  ..+|+..+++.+.
T Consensus       647 ~aGi~~-------------------------~d~GVvts~~~--~~~f~~~fi~~la  676 (688)
T 2iuf_A          647 SGQISS-------------------------ERQGVYTGKNA--GDAFAKDIKSGLS  676 (688)
T ss_dssp             HTTCCT-------------------------TSTTEEEESSS--SHHHHHHHHHHHH
T ss_pred             HcCCCC-------------------------CCCCEEEcCCc--cHHHHHHHHHHHH
Confidence            999864                         26789998776  4456666766554

>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}

Probab=99.73  E-value=3e-17  Score=173.42  Aligned_cols=126  Identities=17%  Similarity=0.120  Sum_probs=112.2

Q ss_pred             CCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCcEEEEEeCCC-CcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccC
Q 012037           51 KNSAPTRRRSSKPTKNLTLTTPTTPEATNSAVPPKKVLVPVGFG-TEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASS  129 (472)
Q Consensus        51 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~kV~ill~~g-~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~  129 (472)
                      ..+.++||+||            +..+...++.+|||+||+.|| |+..|+..++++|+++|+++++|+++.|      .
T Consensus       516 ~~~~~~~~~ls------------~~~~~~~~l~grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g------~  577 (688)
T 3ej6_A          516 YYHNNVTRGVS------------IFNESLPTIATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLA------S  577 (688)
T ss_dssp             SCCCCCCSSCC------------SSSSCCSCCTTCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCC------T
T ss_pred             CCCCCCCcccc------------cccCCCCCccCCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCC------C
Confidence            44567899998            666666688999999999999 9999999999999999999999999976      2


Q ss_pred             CceeeeCCCcCCCCCCcccEEEEcCCccc-------cccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCC
Q 012037          130 GTRLVADTSISNCSHQVFDLIALPGGMPG-------SVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLL  199 (472)
Q Consensus       130 G~~v~~d~~~~~~~~~~~D~vivpGG~~~-------~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL  199 (472)
                      |    +|.++++.++.+||+|+||||..+       ...|+.++++++||+++++|+|+|++||+|++ +|.++|+-
T Consensus       578 G----vD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr~~~~a~~fV~e~~~hgKpIAAIchgp~-lL~~AGI~  649 (688)
T 3ej6_A          578 G----VDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLFPAGRPSQILTDGYRWGKPVAAVGSAKK-ALQSIGVE  649 (688)
T ss_dssp             T----CCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTTSCTTHHHHHHHHHHHTTCCEEEEGGGHH-HHHHTTCC
T ss_pred             C----cccCcccCChhcCcEEEECCCcccccccccchhhhccCHHHHHHHHHHHHcCCEEEEeCccHH-HHHHcCCC
Confidence            4    899999999999999999999654       26788999999999999999999999999876 89999984

>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...

Probab=99.72  E-value=1.6e-17  Score=176.38  Aligned_cols=113  Identities=12%  Similarity=0.132  Sum_probs=107.6

Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037          286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  365 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~  365 (472)
                      +.+||+|++.|||++.|+..++++|+++|++|+++|++++ .|+++.|..|.+|..+++++..+||+||||||  +...+
T Consensus       599 ~grKVaILlaDGfEe~El~~pvdaLr~AG~~V~vVS~~~g-~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG--g~~~L  675 (753)
T 3ttv_A          599 KGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMG-EVTADDGTVLPIAATFAGAPSLTVDAVIVPCG--NIADI  675 (753)
T ss_dssp             TTCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSS-EEECTTSCEEECCEETTTSCGGGCSEEEECCS--CGGGT
T ss_pred             CCCEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEEcCCC-eEEeCCCCEEecccchhhCCCcCCCEEEECCC--ChHHh
Confidence            3479999999999999999999999999999999999998 89999999999999999998788999999999  57788


Q ss_pred             cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCC
Q 012037          366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLL  401 (472)
Q Consensus       366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL  401 (472)
                      ..++.+++||+++++++|+|++||+|+++|+++||-
T Consensus       676 r~d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~AGL~  711 (753)
T 3ttv_A          676 ADNGDANYYLMEAYKHLKPIALAGDARKFKATIKIA  711 (753)
T ss_dssp             TTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGGGTCC
T ss_pred             hhCHHHHHHHHHHHhcCCeEEEECchHHHHHHcCCC
Confidence            899999999999999999999999999999999984

>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*

Probab=99.56  E-value=2e-14  Score=152.42  Aligned_cols=142  Identities=15%  Similarity=0.156  Sum_probs=112.7

Q ss_pred             hCchhHHhhhhccccccCCc-ch-----hhhccccccccc--CCCCEEEEEeC--CCCCHHHHHHHHHHHHhCCCeEEEE
Q 012037          251 FGESVAKEIGELLLMHNADN-SL-----KKEEFNEVEWFF--DRMPRVLIPIA--NGSEEIEIVTIVDILRRAKVDVVVA  320 (472)
Q Consensus       251 ~g~~~a~~va~~l~~~~~~~-~~-----~~~~~n~~~~~~--~~~~~V~il~~--~g~~~~e~~~~~d~l~~a~~~v~~v  320 (472)
                      ...+.+++|++.|.+..... ..     .+..++......  -..+||+|++.  +||++.|+..+.+.|+++|.+++++
T Consensus       485 ~d~~~~~~v~~~l~~~~p~~~~~~~~~~~~~~ls~~~~~~~~l~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vV  564 (688)
T 2iuf_A          485 ISDNLATRVASAIGVEAPKPNSSFYHDNTTAHIGAFGEKLAKLDGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVV  564 (688)
T ss_dssp             HCHHHHHHHHTTTTCCCCCCCGGGCCCCCCTTCSSSSSCCSCCTTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEE
T ss_pred             hCHHHHHHHHHHhCCCCCCCCccCCCCCCCcccccCcCCCCCCCCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEE
Confidence            35567777888776543221 11     122333222111  13479999999  9999999999999999999999999


Q ss_pred             EecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcc----------------hhcccccHHHHHHHHHHHHcCCe
Q 012037          321 SVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG----------------AERLQKSRILKKLLKEQKVAGRI  384 (472)
Q Consensus       321 s~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~----------------~~~~~~~~~l~~~L~~~~~~g~~  384 (472)
                      +++.+ .         .+|.++++.+..+||+|+||||..+                ...+..++.++++|+++++.||+
T Consensus       565 s~~~g-~---------~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~gKp  634 (688)
T 2iuf_A          565 AERXA-N---------NVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEPSAGSGASTLYPAGRPLNILLDAFRFGKT  634 (688)
T ss_dssp             ESSCC-T---------TCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHHHHHTCE
T ss_pred             eccCC-c---------ccccchhcCCccccCeEEecCCCcccccccccccccccccchhhcccChHHHHHHHHHHHcCCE
Confidence            99876 2         7788888888889999999999755                66788999999999999999999


Q ss_pred             EEEEchhHHHHHHcCCCC
Q 012037          385 YGAVCSSPIVLHKHGLLK  402 (472)
Q Consensus       385 v~aic~G~~lLA~aGlL~  402 (472)
                      |++||+|+++|.++|+..
T Consensus       635 IaAIc~ap~vL~~aGi~~  652 (688)
T 2iuf_A          635 VGALGSGSDALESGQISS  652 (688)
T ss_dssp             EEEEGGGHHHHHHTTCCT
T ss_pred             EEEECchHHHHHHcCCCC
Confidence            999999999999999853

>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}

Probab=99.48  E-value=2e-13  Score=144.40  Aligned_cols=140  Identities=16%  Similarity=0.146  Sum_probs=110.9

Q ss_pred             CchhHHhhhhccccccCCcch------hhhccccc--ccccCCCCEEEEEeCCC-CCHHHHHHHHHHHHhCCCeEEEEEe
Q 012037          252 GESVAKEIGELLLMHNADNSL------KKEEFNEV--EWFFDRMPRVLIPIANG-SEEIEIVTIVDILRRAKVDVVVASV  322 (472)
Q Consensus       252 g~~~a~~va~~l~~~~~~~~~------~~~~~n~~--~~~~~~~~~V~il~~~g-~~~~e~~~~~d~l~~a~~~v~~vs~  322 (472)
                      ..+.++.|++.|.........      .++.++.+  .+..-..+||+||+.+| |++.|+..+.+.|+++|++++++++
T Consensus       494 d~~~~~~va~~l~~~~~~~~~~~~~~~~~~~ls~~~~~~~~l~grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp  573 (688)
T 3ej6_A          494 SNDVAKRVAVALGLEAPQPDPTYYHNNVTRGVSIFNESLPTIATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAE  573 (688)
T ss_dssp             CHHHHHHHHHHHTSCCCSCCTTSCCCCCCSSCCSSSSCCSCCTTCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CHHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccCCCCCccCCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeC
Confidence            455666677666654322111      13333332  12222458999999999 9999999999999999999999999


Q ss_pred             cCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcc-------hhcccccHHHHHHHHHHHHcCCeEEEEchhHHHH
Q 012037          323 ERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG-------AERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVL  395 (472)
Q Consensus       323 ~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~-------~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lL  395 (472)
                      +.+      .|    +|.++++++..+||+|+||||..+       .+.+..++.+++|++++++.+|+|++||+|+++|
T Consensus       574 ~~g------~G----vD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr~~~~a~~fV~e~~~hgKpIAAIchgp~lL  643 (688)
T 3ej6_A          574 YLA------SG----VDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLFPAGRPSQILTDGYRWGKPVAAVGSAKKAL  643 (688)
T ss_dssp             SCC------TT----CCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTTSCTTHHHHHHHHHHHTTCCEEEEGGGHHHH
T ss_pred             CCC------CC----cccCcccCChhcCcEEEECCCcccccccccchhhhccCHHHHHHHHHHHHcCCEEEEeCccHHHH
Confidence            876      24    788999988899999999999744       2668889999999999999999999999999999


Q ss_pred             HHcCCC
Q 012037          396 HKHGLL  401 (472)
Q Consensus       396 A~aGlL  401 (472)
                      .++|+-
T Consensus       644 ~~AGI~  649 (688)
T 3ej6_A          644 QSIGVE  649 (688)
T ss_dssp             HHTTCC
T ss_pred             HHcCCC
Confidence            999984

>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}

Probab=99.04  E-value=2.1e-10  Score=106.41  Aligned_cols=95  Identities=21%  Similarity=0.349  Sum_probs=76.2

Q ss_pred             CCCEEEEEeCCCCCH-HHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037          286 RMPRVLIPIANGSEE-IEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER  364 (472)
Q Consensus       286 ~~~~V~il~~~g~~~-~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~  364 (472)
                      +|+||+|+.+++++. .+   +.+.|+.+|+++++++..                   ++.  .++|.||||||....+.
T Consensus         1 m~~~i~il~~~~~~~~~~---~~~~l~~~g~~~~~~~~~-------------------~~~--~~~d~lil~Gg~~~~~~   56 (213)
T 3d54_D            1 MKPRACVVVYPGSNCDRD---AYHALEINGFEPSYVGLD-------------------DKL--DDYELIILPGGFSYGDY   56 (213)
T ss_dssp             CCCEEEEECCTTEEEHHH---HHHHHHTTTCEEEEECTT-------------------CCC--SSCSEEEECEECGGGGC
T ss_pred             CCcEEEEEEcCCCCccHH---HHHHHHHCCCEEEEEecC-------------------CCc--ccCCEEEECCCCchhhh
Confidence            468999999999874 54   489999999999887532                   122  57999999999632222


Q ss_pred             -----ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCc
Q 012037          365 -----LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAK  404 (472)
Q Consensus       365 -----~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~  404 (472)
                           ...++.+.+||+++.+++++|.+||.|..+|+.+|+|+|+
T Consensus        57 ~~~~~~~~~~~~~~~l~~~~~~~~pilgIC~G~qlLa~aGll~g~  101 (213)
T 3d54_D           57 LRPGAVAAREKIAFEIAKAAERGKLIMGICNGFQILIEMGLLKGA  101 (213)
T ss_dssp             SSTTHHHHTSTTHHHHHHHHHHTCEEEECHHHHHHHHHHTSSCSE
T ss_pred             hccccccccHHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCC
Confidence                 1235678999999999999999999999999999999985

>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}

Probab=98.86  E-value=3.5e-09  Score=98.18  Aligned_cols=94  Identities=23%  Similarity=0.311  Sum_probs=73.9

Q ss_pred             CcEEEEEeCCCCcH-HHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc-
Q 012037           84 PKKVLVPVGFGTEE-MEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR-  161 (472)
Q Consensus        84 ~~kV~ill~~g~~~-~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~-  161 (472)
                      |+||+|+.++++.. .+   +.+.|+++|+++.+++..                   ++.  .++|+||||||...... 
T Consensus         2 ~~~i~il~~~~~~~~~~---~~~~l~~~g~~~~~~~~~-------------------~~~--~~~d~lil~Gg~~~~~~~   57 (213)
T 3d54_D            2 KPRACVVVYPGSNCDRD---AYHALEINGFEPSYVGLD-------------------DKL--DDYELIILPGGFSYGDYL   57 (213)
T ss_dssp             CCEEEEECCTTEEEHHH---HHHHHHTTTCEEEEECTT-------------------CCC--SSCSEEEECEECGGGGCS
T ss_pred             CcEEEEEEcCCCCccHH---HHHHHHHCCCEEEEEecC-------------------CCc--ccCCEEEECCCCchhhhh
Confidence            67999999999874 44   489999999999888642                   112  36999999999532222 


Q ss_pred             ----ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCc
Q 012037          162 ----LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRK  202 (472)
Q Consensus       162 ----l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~  202 (472)
                          +..+..+.+||+++++++++|.+||.| ..+|+.+|+|+|+
T Consensus        58 ~~~~~~~~~~~~~~l~~~~~~~~pilgIC~G-~qlLa~aGll~g~  101 (213)
T 3d54_D           58 RPGAVAAREKIAFEIAKAAERGKLIMGICNG-FQILIEMGLLKGA  101 (213)
T ss_dssp             STTHHHHTSTTHHHHHHHHHHTCEEEECHHH-HHHHHHHTSSCSE
T ss_pred             ccccccccHHHHHHHHHHHHCCCEEEEECHH-HHHHHHcCCCCCC
Confidence                123567899999999999999999996 5689999999984

>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*

Probab=98.07  E-value=4.5e-06  Score=76.02  Aligned_cols=87  Identities=22%  Similarity=0.265  Sum_probs=62.2

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh-cc
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-RL  365 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~-~~  365 (472)
                      |+||+|+-+.+ ...+   ..+.|+++|+++.+++..                   +++  .++|.|++|||..... .+
T Consensus         1 ~m~I~il~~~~-~~~~---~~~~l~~~g~~~~~~~~~-------------------~~l--~~~d~iil~GG~~~~~~~~   55 (196)
T 2nv0_A            1 MLTIGVLGLQG-AVRE---HIHAIEACGAAGLVVKRP-------------------EQL--NEVDGLILPGGESTTMRRL   55 (196)
T ss_dssp             CCEEEEECSSS-CCHH---HHHHHHHTTCEEEEECSG-------------------GGG--GGCSEEEECCSCHHHHHHH
T ss_pred             CcEEEEEEccC-CcHH---HHHHHHHCCCEEEEeCCh-------------------HHH--hhCCEEEECCCChhhHHHH
Confidence            47899997632 2222   248899999988776431                   123  5689999999973221 22


Q ss_pred             cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      ..+..+.++|+++.+++++|.+||.|..+|+.+
T Consensus        56 ~~~~~~~~~i~~~~~~~~pilgIC~G~q~l~~~   88 (196)
T 2nv0_A           56 IDTYQFMEPLREFAAQGKPMFGTCAGLIILAKE   88 (196)
T ss_dssp             HHHTTCHHHHHHHHHTTCCEEEETHHHHHHSBC
T ss_pred             hhhHHHHHHHHHHHHCCCcEEEECHHHHHHHHH
Confidence            223455889999999999999999999999864

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}

Probab=98.00  E-value=3.3e-05  Score=72.51  Aligned_cols=94  Identities=18%  Similarity=0.221  Sum_probs=69.5

Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc
Q 012037          288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK  367 (472)
Q Consensus       288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~  367 (472)
                      |||+++..+.++....  +.+.|+..|++++++....+.              .+.+ +..+||.|||+||...+.....
T Consensus         1 m~i~vi~h~~~e~~g~--~~~~l~~~g~~~~~~~~~~~~--------------~~p~-~~~~~d~lii~GGp~~~~~~~~   63 (236)
T 3l7n_A            1 MRIHFILHETFEAPGA--YLAWAALRGHDVSMTKVYRYE--------------KLPK-DIDDFDMLILMGGPQSPSSTKK   63 (236)
T ss_dssp             CEEEEEECCTTSCCHH--HHHHHHHTTCEEEEEEGGGTC--------------CCCS-CGGGCSEEEECCCSSCTTCCTT
T ss_pred             CeEEEEeCCCCCCchH--HHHHHHHCCCeEEEEeeeCCC--------------CCCC-CccccCEEEECCCCCCcccccc
Confidence            5899999888776554  446788999999998876541              1221 1257999999999754321111


Q ss_pred             c------HHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          368 S------RILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       368 ~------~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      +      ..+.++|+++.+++++|.+||-|..+|+.+
T Consensus        64 ~~~~~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~  100 (236)
T 3l7n_A           64 EFPYYDAQAEVKLIQKAAKSEKIIVGVCLGAQLMGVA  100 (236)
T ss_dssp             TCTTCCHHHHHHHHHHHHHTTCEEEEETHHHHHHHHH
T ss_pred             cCcccchHHHHHHHHHHHHcCCCEEEEchHHHHHHHH
Confidence            1      447899999999999999999999999875

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*

Probab=97.99  E-value=2.3e-05  Score=74.21  Aligned_cols=95  Identities=19%  Similarity=0.151  Sum_probs=70.4

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh-cc
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-RL  365 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~-~~  365 (472)
                      +++|+|+..+.++..+..  .+.|+..|++++++....+..             ...+.  .++|.|||+||..... ..
T Consensus         3 ~~~vliiqh~~~e~~~~i--~~~l~~~G~~v~v~~~~~~~~-------------~p~~~--~~~d~lIl~GGp~~~~d~~   65 (250)
T 3m3p_A            3 LKPVMIIQFSASEGPGHF--GDFLAGEHIPFQVLRMDRSDP-------------LPAEI--RDCSGLAMMGGPMSANDDL   65 (250)
T ss_dssp             CCCEEEEESSSSCCCHHH--HHHHHHTTCCEEEEEGGGTCC-------------CCSCG--GGSSEEEECCCSSCTTSCC
T ss_pred             CCeEEEEECCCCCCHHHH--HHHHHHCCCeEEEEeccCCCc-------------CcCcc--ccCCEEEECCCCCcccccc
Confidence            468999988877766654  456899999999988765410             11223  5799999999974322 12


Q ss_pred             cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      .....++++|+++.+.+++|.+||-|..+|+.+
T Consensus        66 ~~~~~~~~~i~~~~~~~~PvlGIC~G~Qll~~~   98 (250)
T 3m3p_A           66 PWMPTLLALIRDAVAQRVPVIGHCLGGQLLAKA   98 (250)
T ss_dssp             TTHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHcCCCEEEECHHHHHHHHH
Confidence            233567899999999999999999999999875

>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1

Probab=97.96  E-value=6.6e-06  Score=76.43  Aligned_cols=87  Identities=23%  Similarity=0.271  Sum_probs=63.8

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh-cc
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-RL  365 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~-~~  365 (472)
                      .++|+|+.+++.. .+   .++.|+++|+++.+++..                   +++  .++|.||+|||..... .+
T Consensus        23 ~~~I~il~~~~~~-~~---~~~~l~~~G~~~~~~~~~-------------------~~l--~~~Dglil~GG~~~~~~~~   77 (219)
T 1q7r_A           23 NMKIGVLGLQGAV-RE---HVRAIEACGAEAVIVKKS-------------------EQL--EGLDGLVLPGGESTTMRRL   77 (219)
T ss_dssp             CCEEEEESCGGGC-HH---HHHHHHHTTCEEEEECSG-------------------GGG--TTCSEEEECCCCHHHHHHH
T ss_pred             CCEEEEEeCCCCc-HH---HHHHHHHCCCEEEEECCH-------------------HHH--hhCCEEEECCCChHHHHHH
Confidence            4789999876521 22   468999999988877531                   133  5699999999973221 22


Q ss_pred             cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      ..+..+.++|+++.+++++|.+||.|..+|+.+
T Consensus        78 ~~~~~~~~~i~~~~~~~~PilGIC~G~QlL~~~  110 (219)
T 1q7r_A           78 IDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKR  110 (219)
T ss_dssp             HHHTTCHHHHHHHHHTTCCEEEETTHHHHHEEE
T ss_pred             hhhhHHHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence            224456799999999999999999999999864

>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}

Probab=97.93  E-value=1.1e-05  Score=74.33  Aligned_cols=88  Identities=23%  Similarity=0.327  Sum_probs=62.9

Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh-c
Q 012037          286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-R  364 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~-~  364 (472)
                      ..+||+|+-+++    .+....+.|+++|+++.+++..                   +++  .++|.||+|||..... .
T Consensus        19 ~~~~I~ii~~~~----~~~~~~~~l~~~g~~~~~~~~~-------------------~~l--~~~d~iil~GG~~~~~~~   73 (208)
T 2iss_D           19 SHMKIGVLGVQG----DVREHVEALHKLGVETLIVKLP-------------------EQL--DMVDGLILPGGESTTMIR   73 (208)
T ss_dssp             -CCEEEEECSSS----CHHHHHHHHHHTTCEEEEECSG-------------------GGG--GGCSEEEECSSCHHHHHH
T ss_pred             CCcEEEEEECCC----chHHHHHHHHHCCCEEEEeCCh-------------------HHH--hhCCEEEECCCcHHHHHh
Confidence            457899997744    3444678888899888776421                   123  4689999999963211 1


Q ss_pred             ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          365 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      +..+..+.++|+++.+++++|.+||.|..+|+.+
T Consensus        74 ~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~  107 (208)
T 2iss_D           74 ILKEMDMDEKLVERINNGLPVFATCAGVILLAKR  107 (208)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCEEEETHHHHHHEEE
T ss_pred             hhhhhhHHHHHHHHHHCCCeEEEECHHHHHHHHH
Confidence            2223346789999999999999999999999875

>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1

Probab=97.88  E-value=1.3e-05  Score=74.39  Aligned_cols=87  Identities=22%  Similarity=0.165  Sum_probs=61.6

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc-cc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV-RL  162 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~-~l  162 (472)
                      .+||+|+.+.+    .+...++.|+++|+++.+++..                   ++.+  ++|+|++|||..... .+
T Consensus        23 ~~~I~il~~~~----~~~~~~~~l~~~G~~~~~~~~~-------------------~~l~--~~Dglil~GG~~~~~~~~   77 (219)
T 1q7r_A           23 NMKIGVLGLQG----AVREHVRAIEACGAEAVIVKKS-------------------EQLE--GLDGLVLPGGESTTMRRL   77 (219)
T ss_dssp             CCEEEEESCGG----GCHHHHHHHHHTTCEEEEECSG-------------------GGGT--TCSEEEECCCCHHHHHHH
T ss_pred             CCEEEEEeCCC----CcHHHHHHHHHCCCEEEEECCH-------------------HHHh--hCCEEEECCCChHHHHHH
Confidence            56899996644    2233568999999998887631                   1222  699999999953221 12


Q ss_pred             cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ..+..+.++|+++.+++++|.+||.|.+ +|+.+
T Consensus        78 ~~~~~~~~~i~~~~~~~~PilGIC~G~Q-lL~~~  110 (219)
T 1q7r_A           78 IDRYGLMEPLKQFAAAGKPMFGTCAGLI-LLAKR  110 (219)
T ss_dssp             HHHTTCHHHHHHHHHTTCCEEEETTHHH-HHEEE
T ss_pred             hhhhHHHHHHHHHHHcCCeEEEECHHHH-HHHHH
Confidence            2234557899999999999999999866 67764

>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*

Probab=97.87  E-value=1.6e-05  Score=72.32  Aligned_cols=87  Identities=18%  Similarity=0.116  Sum_probs=60.1

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc-cc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV-RL  162 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~-~l  162 (472)
                      |+||+|+-+.+ .   +....+.|+++|+++.+++..                   ++.  .++|+|++|||..... .+
T Consensus         1 ~m~I~il~~~~-~---~~~~~~~l~~~g~~~~~~~~~-------------------~~l--~~~d~iil~GG~~~~~~~~   55 (196)
T 2nv0_A            1 MLTIGVLGLQG-A---VREHIHAIEACGAAGLVVKRP-------------------EQL--NEVDGLILPGGESTTMRRL   55 (196)
T ss_dssp             CCEEEEECSSS-C---CHHHHHHHHHTTCEEEEECSG-------------------GGG--GGCSEEEECCSCHHHHHHH
T ss_pred             CcEEEEEEccC-C---cHHHHHHHHHCCCEEEEeCCh-------------------HHH--hhCCEEEECCCChhhHHHH
Confidence            47899996522 2   222358999999988877531                   112  2699999999953322 22


Q ss_pred             cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ..+..+.++|+++.+++++|.+||.|.+ +|+.+
T Consensus        56 ~~~~~~~~~i~~~~~~~~pilgIC~G~q-~l~~~   88 (196)
T 2nv0_A           56 IDTYQFMEPLREFAAQGKPMFGTCAGLI-ILAKE   88 (196)
T ss_dssp             HHHTTCHHHHHHHHHTTCCEEEETHHHH-HHSBC
T ss_pred             hhhHHHHHHHHHHHHCCCcEEEECHHHH-HHHHH
Confidence            2234557899999999999999999765 67764

>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1

Probab=97.78  E-value=3.3e-05  Score=70.51  Aligned_cols=88  Identities=17%  Similarity=0.147  Sum_probs=61.7

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc-
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL-  365 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~-  365 (472)
                      ++||+|+-+..-+..+   ..+.|+++|+++.+++..                   +++  .++|.|++|||....... 
T Consensus         2 ~~~I~iid~~~~~~~~---~~~~l~~~G~~~~~~~~~-------------------~~l--~~~d~lil~G~g~~~~~~~   57 (200)
T 1ka9_H            2 RMKALLIDYGSGNLRS---AAKALEAAGFSVAVAQDP-------------------KAH--EEADLLVLPGQGHFGQVMR   57 (200)
T ss_dssp             -CEEEEECSSCSCHHH---HHHHHHHTTCEEEEESST-------------------TSC--SSCSEEEECCCSCHHHHHH
T ss_pred             ccEEEEEeCCCccHHH---HHHHHHHCCCeEEEecCh-------------------HHc--ccCCEEEECCCCcHHHHHH
Confidence            4689998554223333   489999999998876421                   123  468999999943111111 


Q ss_pred             -cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          366 -QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       366 -~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                       ..+..+.++|+++.+++++|.+||.|..+|+.+
T Consensus        58 ~l~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~   91 (200)
T 1ka9_H           58 AFQESGFVERVRRHLERGLPFLGICVGMQVLYEG   91 (200)
T ss_dssp             TTSSSCTHHHHHHHHHTTCCEEECTHHHHTTSSE
T ss_pred             HHHhcCHHHHHHHHHHcCCeEEEEcHHHHHHHHh
Confidence             112457899999999999999999999999998

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}

Probab=97.75  E-value=0.00015  Score=67.94  Aligned_cols=94  Identities=15%  Similarity=0.160  Sum_probs=67.3

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccC
Q 012037           85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD  164 (472)
Q Consensus        85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~  164 (472)
                      +||+++..+.++...  .+.+.+++.|++++++....+..              +.+ ...+||+|||+||...+.....
T Consensus         1 m~i~vi~h~~~e~~g--~~~~~l~~~g~~~~~~~~~~~~~--------------~p~-~~~~~d~lii~GGp~~~~~~~~   63 (236)
T 3l7n_A            1 MRIHFILHETFEAPG--AYLAWAALRGHDVSMTKVYRYEK--------------LPK-DIDDFDMLILMGGPQSPSSTKK   63 (236)
T ss_dssp             CEEEEEECCTTSCCH--HHHHHHHHTTCEEEEEEGGGTCC--------------CCS-CGGGCSEEEECCCSSCTTCCTT
T ss_pred             CeEEEEeCCCCCCch--HHHHHHHHCCCeEEEEeeeCCCC--------------CCC-CccccCEEEECCCCCCcccccc
Confidence            589999987776554  45577889999999998765421              111 1237999999999543222222


Q ss_pred             C------hHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          165 C------EILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       165 ~------~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      +      ....++|+++++.+++|.+||-|.. +|+.+
T Consensus        64 ~~~~~~~~~~~~~i~~~~~~~~PvLGIClG~Q-lL~~~  100 (236)
T 3l7n_A           64 EFPYYDAQAEVKLIQKAAKSEKIIVGVCLGAQ-LMGVA  100 (236)
T ss_dssp             TCTTCCHHHHHHHHHHHHHTTCEEEEETHHHH-HHHHH
T ss_pred             cCcccchHHHHHHHHHHHHcCCCEEEEchHHH-HHHHH
Confidence            2      3478999999999999999999765 67765

>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}

Probab=97.73  E-value=3.1e-05  Score=71.18  Aligned_cols=87  Identities=18%  Similarity=0.184  Sum_probs=61.1

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc-cc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV-RL  162 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~-~l  162 (472)
                      .+||+|+-+.+    .+....+.|+++|+++.++....                   +..  ++|+|++|||..... .+
T Consensus        20 ~~~I~ii~~~~----~~~~~~~~l~~~g~~~~~~~~~~-------------------~l~--~~d~iil~GG~~~~~~~~   74 (208)
T 2iss_D           20 HMKIGVLGVQG----DVREHVEALHKLGVETLIVKLPE-------------------QLD--MVDGLILPGGESTTMIRI   74 (208)
T ss_dssp             CCEEEEECSSS----CHHHHHHHHHHTTCEEEEECSGG-------------------GGG--GCSEEEECSSCHHHHHHH
T ss_pred             CcEEEEEECCC----chHHHHHHHHHCCCEEEEeCChH-------------------HHh--hCCEEEECCCcHHHHHhh
Confidence            56899996533    45557888999999888775320                   122  699999999953221 12


Q ss_pred             cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ..+..+.++|+++.+++++|.+||.|.+ +|+.+
T Consensus        75 ~~~~~~~~~i~~~~~~g~PilGIC~G~Q-lL~~~  107 (208)
T 2iss_D           75 LKEMDMDEKLVERINNGLPVFATCAGVI-LLAKR  107 (208)
T ss_dssp             HHHTTCHHHHHHHHHTTCCEEEETHHHH-HHEEE
T ss_pred             hhhhhHHHHHHHHHHCCCeEEEECHHHH-HHHHH
Confidence            2233467899999999999999999765 67764

>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.72  E-value=3.1e-05  Score=70.00  Aligned_cols=87  Identities=16%  Similarity=0.234  Sum_probs=63.8

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcc-hhcc
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG-AERL  365 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~-~~~~  365 (472)
                      .++|+|+.+++    .+....+.|+++|+++.+++..                   +++  +++|.|++|||... ...+
T Consensus         2 ~p~Igi~~~~~----~~~~~~~~l~~~G~~~~~~~~~-------------------~~l--~~~dglil~GG~~~~~~~~   56 (191)
T 2ywd_A            2 RGVVGVLALQG----DFREHKEALKRLGIEAKEVRKK-------------------EHL--EGLKALIVPGGESTTIGKL   56 (191)
T ss_dssp             -CCEEEECSSS----CHHHHHHHHHTTTCCCEEECSG-------------------GGG--TTCSEEEECSSCHHHHHHH
T ss_pred             CcEEEEEecCC----chHHHHHHHHHCCCEEEEeCCh-------------------hhh--ccCCEEEECCCChhhhHHh
Confidence            36899998865    2345789999999888766421                   123  46899999999522 1222


Q ss_pred             cccHHHHHHHHHHHHcC-CeEEEEchhHHHHHHc
Q 012037          366 QKSRILKKLLKEQKVAG-RIYGAVCSSPIVLHKH  398 (472)
Q Consensus       366 ~~~~~l~~~L~~~~~~g-~~v~aic~G~~lLA~a  398 (472)
                      ..+..+.++|+++.+++ ++|.+||.|..+|+.+
T Consensus        57 ~~~~~~~~~i~~~~~~~~~PilGiC~G~Q~l~~~   90 (191)
T 2ywd_A           57 AREYGIEDEVRKRVEEGSLALFGTCAGAIWLAKE   90 (191)
T ss_dssp             HHHTTHHHHHHHHHHTTCCEEEEETHHHHHHEEE
T ss_pred             hhhhhHHHHHHHHHHCCCCeEEEECHHHHHHHHH
Confidence            22346789999999999 9999999999999875

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A

Probab=97.66  E-value=0.0001  Score=66.52  Aligned_cols=86  Identities=17%  Similarity=0.185  Sum_probs=63.2

Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccH
Q 012037          290 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSR  369 (472)
Q Consensus       290 V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~  369 (472)
                      |+|+=+.+..   ...+.+.|+++|+++.++..+.                .++++...++|.|++|||. ....   ..
T Consensus         3 i~iid~~~~~---~~~~~~~l~~~G~~~~~~~~~~----------------~~~~~~~~~~dglil~Gg~-~~~~---~~   59 (189)
T 1wl8_A            3 IVIMDNGGQY---VHRIWRTLRYLGVETKIIPNTT----------------PLEEIKAMNPKGIIFSGGP-SLEN---TG   59 (189)
T ss_dssp             EEEEECSCTT---HHHHHHHHHHTTCEEEEEETTC----------------CHHHHHHTCCSEEEECCCS-CTTC---CT
T ss_pred             EEEEECCCch---HHHHHHHHHHCCCeEEEEECCC----------------ChHHhcccCCCEEEECCCC-Chhh---hh
Confidence            7777766555   3477889999999988776432                2233322469999999996 4332   34


Q ss_pred             HHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          370 ILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       370 ~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      .+.++++++.++++++.+||.|..+|+.+
T Consensus        60 ~~~~~i~~~~~~~~PilGIC~G~Q~l~~~   88 (189)
T 1wl8_A           60 NCEKVLEHYDEFNVPILGICLGHQLIAKF   88 (189)
T ss_dssp             THHHHHHTGGGTCSCEEEETHHHHHHHHH
T ss_pred             hHHHHHHHHhhCCCeEEEEcHHHHHHHHH
Confidence            56888887778899999999999999865

>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1

Probab=97.61  E-value=9.5e-05  Score=67.42  Aligned_cols=87  Identities=21%  Similarity=0.188  Sum_probs=59.4

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcc-cc--c
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMP-GS--V  160 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~-~~--~  160 (472)
                      ++||+|+-+ ++.  .+..+.+.|+++|+++.++...                   ++..  ++|+|++|||.. ..  .
T Consensus         2 ~~~I~iid~-~~~--~~~~~~~~l~~~G~~~~~~~~~-------------------~~l~--~~d~lil~G~g~~~~~~~   57 (200)
T 1ka9_H            2 RMKALLIDY-GSG--NLRSAAKALEAAGFSVAVAQDP-------------------KAHE--EADLLVLPGQGHFGQVMR   57 (200)
T ss_dssp             -CEEEEECS-SCS--CHHHHHHHHHHTTCEEEEESST-------------------TSCS--SCSEEEECCCSCHHHHHH
T ss_pred             ccEEEEEeC-CCc--cHHHHHHHHHHCCCeEEEecCh-------------------HHcc--cCCEEEECCCCcHHHHHH
Confidence            368988843 222  2234589999999998887421                   1122  699999999422 11  1


Q ss_pred             cccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          161 RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       161 ~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      .+ .+..+.++|+++.+++++|.+||.|.. +|+.+
T Consensus        58 ~l-~~~~~~~~i~~~~~~~~PilGIC~G~Q-ll~~~   91 (200)
T 1ka9_H           58 AF-QESGFVERVRRHLERGLPFLGICVGMQ-VLYEG   91 (200)
T ss_dssp             TT-SSSCTHHHHHHHHHTTCCEEECTHHHH-TTSSE
T ss_pred             HH-HhcCHHHHHHHHHHcCCeEEEEcHHHH-HHHHh
Confidence            12 224578999999999999999999755 78876

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*

Probab=97.60  E-value=0.00027  Score=66.80  Aligned_cols=95  Identities=13%  Similarity=0.025  Sum_probs=68.0

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc-c
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR-L  162 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~-l  162 (472)
                      +|||.|+..+.++...  .+.+.|++.|++++++....+...         +    .+  ..+||.|||+||..+... .
T Consensus         3 ~~~vliiqh~~~e~~~--~i~~~l~~~G~~v~v~~~~~~~~~---------p----~~--~~~~d~lIl~GGp~~~~d~~   65 (250)
T 3m3p_A            3 LKPVMIIQFSASEGPG--HFGDFLAGEHIPFQVLRMDRSDPL---------P----AE--IRDCSGLAMMGGPMSANDDL   65 (250)
T ss_dssp             CCCEEEEESSSSCCCH--HHHHHHHHTTCCEEEEEGGGTCCC---------C----SC--GGGSSEEEECCCSSCTTSCC
T ss_pred             CCeEEEEECCCCCCHH--HHHHHHHHCCCeEEEEeccCCCcC---------c----Cc--cccCCEEEECCCCCcccccc
Confidence            5789999888776655  456678999999999887654111         1    11  237999999999533221 2


Q ss_pred             cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      .......++|+++.+.+++|.+||-|.. +|+.+
T Consensus        66 ~~~~~~~~~i~~~~~~~~PvlGIC~G~Q-ll~~~   98 (250)
T 3m3p_A           66 PWMPTLLALIRDAVAQRVPVIGHCLGGQ-LLAKA   98 (250)
T ss_dssp             TTHHHHHHHHHHHHHHTCCEEEETHHHH-HHHHH
T ss_pred             hHHHHHHHHHHHHHHcCCCEEEECHHHH-HHHHH
Confidence            2225678999999999999999999765 67665

>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*

Probab=97.54  E-value=0.0003  Score=80.43  Aligned_cols=101  Identities=12%  Similarity=0.223  Sum_probs=73.7

Q ss_pred             CCCEEEEEeCCCCC-HHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037          286 RMPRVLIPIANGSE-EIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER  364 (472)
Q Consensus       286 ~~~~V~il~~~g~~-~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~  364 (472)
                      ..+||+|+.|+|.+ +.|+.   ..|+++|+++.++..+.   +        ..  .-.++  .++|.|++|||....+.
T Consensus      1046 ~~pkVaIi~~~G~N~~~~~~---~A~~~aG~~~~~v~~~d---l--------~~--~~~~l--~~~d~lvlPGGfSygD~ 1107 (1303)
T 3ugj_A         1046 ARPKVAVLREQGVNSHVEMA---AAFHRAGFDAIDVHMSD---L--------LG--GRIGL--GNFHALVACGGFSYGDV 1107 (1303)
T ss_dssp             CCCEEEEEECTTCCCHHHHH---HHHHHTTCEEEEEEHHH---H--------HT--TSCCG--GGCSEEEECCSCGGGGT
T ss_pred             CCCEEEEEecCCcCCHHHHH---HHHHHhCCceEEEeecc---c--------cc--CcccH--hhCCEEEECCCCcchhh
Confidence            45799999999886 47754   46678899988775421   0        00  01223  57999999998532221


Q ss_pred             ----------ccccHHHHHHHHHHH-HcCCeEEEEchhHHHHHHc-CCCCCc
Q 012037          365 ----------LQKSRILKKLLKEQK-VAGRIYGAVCSSPIVLHKH-GLLKAK  404 (472)
Q Consensus       365 ----------~~~~~~l~~~L~~~~-~~g~~v~aic~G~~lLA~a-GlL~g~  404 (472)
                                ...++.+.+.|+++. ++++++.+||+|..+|.++ |||.|.
T Consensus      1108 l~~g~~~a~~~l~~~~l~~~l~~~~~~~g~pvLGICnG~QlL~e~~gllPg~ 1159 (1303)
T 3ugj_A         1108 LGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPGS 1159 (1303)
T ss_dssp             TSTTHHHHHHHHTSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTTC
T ss_pred             hccchhHHHHHHhchhHHHHHHHHHHhCCCcEEEECHHHHHHHHhcCcCCCC
Confidence                      235677888888865 6899999999999999999 999986

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1

Probab=97.53  E-value=0.00016  Score=65.65  Aligned_cols=90  Identities=17%  Similarity=0.074  Sum_probs=60.8

Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccH
Q 012037          290 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSR  369 (472)
Q Consensus       290 V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~  369 (472)
                      |+|+=..+...   ..+.+.|+++|+++.++..+..               .++++...++|.||++||...........
T Consensus         4 i~iid~~~s~~---~~~~~~l~~~G~~~~v~~~~~~---------------~~~~~~~~~~dglil~gG~~~~~~~~~~~   65 (195)
T 1qdl_B            4 TLIIDNYDSFV---YNIAQIVGELGSYPIVIRNDEI---------------SIKGIERIDPDRLIISPGPGTPEKREDIG   65 (195)
T ss_dssp             EEEEECSCSSH---HHHHHHHHHTTCEEEEEETTTS---------------CHHHHHHHCCSEEEECCCSSCTTSHHHHT
T ss_pred             EEEEECCCchH---HHHHHHHHhCCCEEEEEeCCCC---------------CHHHHhhCCCCEEEECCCCCChhhhhhhh
Confidence            77776554442   3678899999999988765421               23344222599999988764322211112


Q ss_pred             HHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          370 ILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       370 ~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      ...++++++ ++++++.+||-|..+|+.+
T Consensus        66 ~~~~~i~~~-~~~~PvLGIC~G~QlL~~~   93 (195)
T 1qdl_B           66 VSLDVIKYL-GKRTPILGVCLGHQAIGYA   93 (195)
T ss_dssp             THHHHHHHH-TTTSCEEEETHHHHHHHHH
T ss_pred             HHHHHHHHh-cCCCcEEEEehHHHHHHHH
Confidence            345888875 7899999999999999975

>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.48  E-value=8.8e-05  Score=66.95  Aligned_cols=87  Identities=18%  Similarity=0.109  Sum_probs=61.5

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc-cccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG-SVRL  162 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~-~~~l  162 (472)
                      .++|+|+...+    .+....+.|+++|+++.++....                   +.+  ++|.|++|||... ...+
T Consensus         2 ~p~Igi~~~~~----~~~~~~~~l~~~G~~~~~~~~~~-------------------~l~--~~dglil~GG~~~~~~~~   56 (191)
T 2ywd_A            2 RGVVGVLALQG----DFREHKEALKRLGIEAKEVRKKE-------------------HLE--GLKALIVPGGESTTIGKL   56 (191)
T ss_dssp             -CCEEEECSSS----CHHHHHHHHHTTTCCCEEECSGG-------------------GGT--TCSEEEECSSCHHHHHHH
T ss_pred             CcEEEEEecCC----chHHHHHHHHHCCCEEEEeCChh-------------------hhc--cCCEEEECCCChhhhHHh
Confidence            35799998765    34567899999998887764220                   122  5899999999422 2222


Q ss_pred             cCChHHHHHHHHHHhcC-CeEEEEchhhHHhhhcC
Q 012037          163 RDCEILKKITSKQAEEK-RLYGAICAAPAVTLLPW  196 (472)
Q Consensus       163 ~~~~~~~~~l~~~~~~~-k~I~aic~g~~~lLa~a  196 (472)
                      ..+..+.++|+++.+++ ++|.+||.|.. +|+.+
T Consensus        57 ~~~~~~~~~i~~~~~~~~~PilGiC~G~Q-~l~~~   90 (191)
T 2ywd_A           57 AREYGIEDEVRKRVEEGSLALFGTCAGAI-WLAKE   90 (191)
T ss_dssp             HHHTTHHHHHHHHHHTTCCEEEEETHHHH-HHEEE
T ss_pred             hhhhhHHHHHHHHHHCCCCeEEEECHHHH-HHHHH
Confidence            22356788999999999 99999999755 67664

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1

Probab=97.36  E-value=0.00028  Score=66.28  Aligned_cols=95  Identities=20%  Similarity=0.194  Sum_probs=63.7

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc--
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER--  364 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~--  364 (472)
                      ..||+|+-...+  .....+...|+..|+++.++-.+.+             +...+++  .++|.||++||......  
T Consensus        12 ~~~~~~i~~~~~--~~~~~i~~~l~~~G~~v~v~~~~~~-------------~~~~~~l--~~~Dglil~GG~~~~~~~~   74 (239)
T 1o1y_A           12 HVRVLAIRHVEI--EDLGMMEDIFREKNWSFDYLDTPKG-------------EKLERPL--EEYSLVVLLGGYMGAYEEE   74 (239)
T ss_dssp             CCEEEEECSSTT--SSCTHHHHHHHHTTCEEEEECGGGT-------------CCCSSCG--GGCSEEEECCCSCCTTCTT
T ss_pred             eeEEEEEECCCC--CCchHHHHHHHhCCCcEEEeCCcCc-------------cccccch--hcCCEEEECCCCccccCCc
Confidence            356666644433  3344678889999988875533221             1011223  57899999998643321  


Q ss_pred             -ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          365 -LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       365 -~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                       ......+.++|+++.+++++|.+||-|..+|+.+
T Consensus        75 ~~~~l~~~~~~i~~~~~~~~PiLGIC~G~QlL~~a  109 (239)
T 1o1y_A           75 KYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKV  109 (239)
T ss_dssp             TCTHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             cChhHHHHHHHHHHHHHCCCCEEEEchhHHHHHHH
Confidence             1112367899999989999999999999999875

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G

Probab=97.31  E-value=0.00028  Score=65.63  Aligned_cols=86  Identities=15%  Similarity=0.207  Sum_probs=61.6

Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhC---CCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh-
Q 012037          288 PRVLIPIANGSEEIEIVTIVDILRRA---KVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-  363 (472)
Q Consensus       288 ~~V~il~~~g~~~~e~~~~~d~l~~a---~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~-  363 (472)
                      ++|+|+.+++-.    ....+.|+++   |.++.++..                   .+++  +++|.||+|||..... 
T Consensus         4 ~~I~Il~~~~~~----~~~~~~l~~~~~~G~~~~~~~~-------------------~~~l--~~~dglil~GG~~~~~~   58 (227)
T 2abw_A            4 ITIGVLSLQGDF----EPHINHFIKLQIPSLNIIQVRN-------------------VHDL--GLCDGLVIPGGESTTVR   58 (227)
T ss_dssp             EEEEEECTTSCC----HHHHHHHHTTCCTTEEEEEECS-------------------HHHH--HTCSEEEECCSCHHHHH
T ss_pred             cEEEEEeCCCCc----HHHHHHHHHhccCCeEEEEEcC-------------------cccc--ccCCEEEECCCcHHHHH
Confidence            679999887532    2357888887   766655421                   1223  4689999999963221 


Q ss_pred             ccccc--HHHHHHHHHHHHc-CCeEEEEchhHHHHHHc
Q 012037          364 RLQKS--RILKKLLKEQKVA-GRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       364 ~~~~~--~~l~~~L~~~~~~-g~~v~aic~G~~lLA~a  398 (472)
                      .+..+  ..+.++|+++.++ +++|.+||.|..+|+++
T Consensus        59 ~~~~~d~~~~~~~i~~~~~~~g~PilGIC~G~QlL~~~   96 (227)
T 2abw_A           59 RCCAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKN   96 (227)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHHHTEEE
T ss_pred             HHHHHhHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHH
Confidence            22233  5689999999999 99999999999999875

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1

Probab=97.28  E-value=0.00063  Score=62.59  Aligned_cols=90  Identities=19%  Similarity=0.207  Sum_probs=60.7

Q ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCC-Ccchh
Q 012037          285 DRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGG-VAGAE  363 (472)
Q Consensus       285 ~~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG-~~~~~  363 (472)
                      ++|+||+++=+.+..   .....+.|+++|+++.++..+.                ..+++  .++|.|||||| .....
T Consensus        11 ~~~~~i~~id~~~~~---~~~~~~~l~~~G~~~~vv~~~~----------------~~~~l--~~~DglIl~GG~p~~~~   69 (212)
T 2a9v_A           11 HHMLKIYVVDNGGQW---THREWRVLRELGVDTKIVPNDI----------------DSSEL--DGLDGLVLSGGAPNIDE   69 (212)
T ss_dssp             CCCCBEEEEEESCCT---TCHHHHHHHHTTCBCCEEETTS----------------CGGGG--TTCSEEEEEEECSCGGG
T ss_pred             cccceEEEEeCCCcc---HHHHHHHHHHCCCEEEEEeCCC----------------CHHHH--hCCCEEEECCCCCCCCc
Confidence            467888887665444   3356778888898877665431                23444  45999999999 53332


Q ss_pred             cccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          364 RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       364 ~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      .....+.+.+++   .++++++.+||-|..+|+.+
T Consensus        70 ~~~~~~~l~~~~---~~~~~PiLGIC~G~Qll~~~  101 (212)
T 2a9v_A           70 ELDKLGSVGKYI---DDHNYPILGICVGAQFIALH  101 (212)
T ss_dssp             TGGGHHHHHHHH---HHCCSCEEEETHHHHHHHHH
T ss_pred             ccccchhHHHHH---HhCCCCEEEEChHHHHHHHH
Confidence            211233444444   47899999999999999875

>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*

Probab=97.23  E-value=0.00089  Score=76.60  Aligned_cols=101  Identities=14%  Similarity=0.128  Sum_probs=71.8

Q ss_pred             CCcEEEEEeCCCCcH-HHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037           83 PPKKVLVPVGFGTEE-MEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR  161 (472)
Q Consensus        83 ~~~kV~ill~~g~~~-~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~  161 (472)
                      ...||+|+.++|..- .+   +..+|+++|+++.++....   +        ..+.  .+.  .+||.|++|||....+.
T Consensus      1046 ~~pkVaIi~~~G~N~~~~---~~~A~~~aG~~~~~v~~~d---l--------~~~~--~~l--~~~d~lvlPGGfSygD~ 1107 (1303)
T 3ugj_A         1046 ARPKVAVLREQGVNSHVE---MAAAFHRAGFDAIDVHMSD---L--------LGGR--IGL--GNFHALVACGGFSYGDV 1107 (1303)
T ss_dssp             CCCEEEEEECTTCCCHHH---HHHHHHHTTCEEEEEEHHH---H--------HTTS--CCG--GGCSEEEECCSCGGGGT
T ss_pred             CCCEEEEEecCCcCCHHH---HHHHHHHhCCceEEEeecc---c--------ccCc--ccH--hhCCEEEECCCCcchhh
Confidence            456999999999775 55   4678889999998875421   0        0000  112  37999999999532222


Q ss_pred             ----------ccCChHHHHHHHHHH-hcCCeEEEEchhhHHhhhcC-CCCCCc
Q 012037          162 ----------LRDCEILKKITSKQA-EEKRLYGAICAAPAVTLLPW-GLLRRK  202 (472)
Q Consensus       162 ----------l~~~~~~~~~l~~~~-~~~k~I~aic~g~~~lLa~a-GlL~g~  202 (472)
                                ...++.+.+.+++++ +.++++.+||.|-+ +|.++ |||.|.
T Consensus      1108 l~~g~~~a~~~l~~~~l~~~l~~~~~~~g~pvLGICnG~Q-lL~e~~gllPg~ 1159 (1303)
T 3ugj_A         1108 LGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQ-MMSNLRELIPGS 1159 (1303)
T ss_dssp             TSTTHHHHHHHHTSHHHHHHHHHHHHSSSCEEEEETHHHH-HHHTTGGGSTTC
T ss_pred             hccchhHHHHHHhchhHHHHHHHHHHhCCCcEEEECHHHH-HHHHhcCcCCCC
Confidence                      234567778888865 68999999999766 79988 999885

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A

Probab=97.21  E-value=0.00054  Score=61.68  Aligned_cols=86  Identities=14%  Similarity=0.107  Sum_probs=59.6

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCCh
Q 012037           87 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCE  166 (472)
Q Consensus        87 V~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~  166 (472)
                      |+|+=+.+..   ...+.+.|+++|+++.++..+.                .+++....+||+|++|||. ...   +..
T Consensus         3 i~iid~~~~~---~~~~~~~l~~~G~~~~~~~~~~----------------~~~~~~~~~~dglil~Gg~-~~~---~~~   59 (189)
T 1wl8_A            3 IVIMDNGGQY---VHRIWRTLRYLGVETKIIPNTT----------------PLEEIKAMNPKGIIFSGGP-SLE---NTG   59 (189)
T ss_dssp             EEEEECSCTT---HHHHHHHHHHTTCEEEEEETTC----------------CHHHHHHTCCSEEEECCCS-CTT---CCT
T ss_pred             EEEEECCCch---HHHHHHHHHHCCCeEEEEECCC----------------ChHHhcccCCCEEEECCCC-Chh---hhh
Confidence            6666554433   3467899999999998887542                1111111259999999994 332   245


Q ss_pred             HHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          167 ILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       167 ~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ...++++++.+++++|.+||.|.. +|+.+
T Consensus        60 ~~~~~i~~~~~~~~PilGIC~G~Q-~l~~~   88 (189)
T 1wl8_A           60 NCEKVLEHYDEFNVPILGICLGHQ-LIAKF   88 (189)
T ss_dssp             THHHHHHTGGGTCSCEEEETHHHH-HHHHH
T ss_pred             hHHHHHHHHhhCCCeEEEEcHHHH-HHHHH
Confidence            568899877789999999999766 67765

>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}

Probab=97.17  E-value=0.00052  Score=61.62  Aligned_cols=83  Identities=19%  Similarity=0.209  Sum_probs=56.0

Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc-cc
Q 012037          288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER-LQ  366 (472)
Q Consensus       288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~-~~  366 (472)
                      |||+|+-.+|-    +....+.|+++|+++.++..                +   +++  .++|.|++|||...... +.
T Consensus         1 m~i~vl~~~g~----~~~~~~~l~~~G~~~~~~~~----------------~---~~~--~~~dglil~GG~~~~~~~~~   55 (186)
T 2ywj_A            1 MIIGVLAIQGD----VEEHEEAIKKAGYEAKKVKR----------------V---EDL--EGIDALIIPGGESTAIGKLM   55 (186)
T ss_dssp             CEEEEECSSSC----CHHHHHHHHHTTSEEEEECS----------------G---GGG--TTCSEEEECCSCHHHHHHHH
T ss_pred             CEEEEEecCcc----hHHHHHHHHHCCCEEEEECC----------------h---HHh--ccCCEEEECCCCchhhhhhh
Confidence            57899866442    22346899999998876642                0   123  56899999999632211 11


Q ss_pred             ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          367 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       367 ~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      ....+.++++   +++++|.+||-|..+|+.+
T Consensus        56 ~~~~~~~~i~---~~~~PilGIC~G~Qll~~~   84 (186)
T 2ywj_A           56 KKYGLLEKIK---NSNLPILGTCAGMVLLSKG   84 (186)
T ss_dssp             HHTTHHHHHH---TCCCCEEEETHHHHHHSSC
T ss_pred             hccCHHHHHH---hcCCcEEEECHHHHHHHHH
Confidence            1223555655   7889999999999999976

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G

Probab=97.13  E-value=0.0004  Score=64.53  Aligned_cols=87  Identities=15%  Similarity=0.089  Sum_probs=60.2

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhC---CCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRA---GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV  160 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~a---g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~  160 (472)
                      .++|+|+.+++.    +....+.|+++   |+++.++...                   ++.+  ++|+||+|||.....
T Consensus         3 ~~~I~Il~~~~~----~~~~~~~l~~~~~~G~~~~~~~~~-------------------~~l~--~~dglil~GG~~~~~   57 (227)
T 2abw_A            3 EITIGVLSLQGD----FEPHINHFIKLQIPSLNIIQVRNV-------------------HDLG--LCDGLVIPGGESTTV   57 (227)
T ss_dssp             CEEEEEECTTSC----CHHHHHHHHTTCCTTEEEEEECSH-------------------HHHH--TCSEEEECCSCHHHH
T ss_pred             CcEEEEEeCCCC----cHHHHHHHHHhccCCeEEEEEcCc-------------------cccc--cCCEEEECCCcHHHH
Confidence            468999977653    23468888888   8776655311                   1122  589999999952221


Q ss_pred             -cccCC--hHHHHHHHHHHhc-CCeEEEEchhhHHhhhcC
Q 012037          161 -RLRDC--EILKKITSKQAEE-KRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       161 -~l~~~--~~~~~~l~~~~~~-~k~I~aic~g~~~lLa~a  196 (472)
                       .+..+  ..+.++|+++.+. +++|.+||.|.+ +|+.+
T Consensus        58 ~~~~~~d~~~~~~~i~~~~~~~g~PilGIC~G~Q-lL~~~   96 (227)
T 2abw_A           58 RRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCI-LLSKN   96 (227)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHH-HTEEE
T ss_pred             HHHHHHhHHHHHHHHHHHHHhcCCEEEEECHHHH-HHHHH
Confidence             22232  5678999999999 999999999755 67765

>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B

Probab=97.10  E-value=0.00073  Score=61.45  Aligned_cols=87  Identities=18%  Similarity=0.292  Sum_probs=58.3

Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhCC-----CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch
Q 012037          288 PRVLIPIANGSEEIEIVTIVDILRRAK-----VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA  362 (472)
Q Consensus       288 ~~V~il~~~g~~~~e~~~~~d~l~~a~-----~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~  362 (472)
                      |||+|+-+..-+..++   .+.|++.|     ++++++..  .             +    +   .++|.||+|||....
T Consensus         1 m~I~iid~~~g~~~s~---~~~l~~~G~~~~~~~~~~~~~--~-------------~----~---~~~dglilpG~g~~~   55 (201)
T 1gpw_B            1 MRIGIISVGPGNIMNL---YRGVKRASENFEDVSIELVES--P-------------R----N---DLYDLLFIPGVGHFG   55 (201)
T ss_dssp             CEEEEECCSSSCCHHH---HHHHHHHSTTBSSCEEEEECS--C-------------C----S---SCCSEEEECCCSCSH
T ss_pred             CEEEEEecCCchHHHH---HHHHHHcCCCCCceEEEEECC--C-------------c----c---cCCCEEEECCCCcHH
Confidence            5789987763333333   36777777     77776542  1             1    1   468999999953111


Q ss_pred             hccc--ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC
Q 012037          363 ERLQ--KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG  399 (472)
Q Consensus       363 ~~~~--~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG  399 (472)
                      +...  .+..+.++|+++.+++++|.+||.|..+|+.+.
T Consensus        56 ~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~~   94 (201)
T 1gpw_B           56 EGMRRLRENDLIDFVRKHVEDERYVVGVCLGMQLLFEES   94 (201)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHTTSSEE
T ss_pred             HHHHHHHhhCHHHHHHHHHHcCCeEEEEChhHHHHHHhh
Confidence            1111  111367899999899999999999999999874

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1

Probab=97.05  E-value=0.00063  Score=61.66  Aligned_cols=90  Identities=10%  Similarity=0.070  Sum_probs=57.4

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCCh
Q 012037           87 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCE  166 (472)
Q Consensus        87 V~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~  166 (472)
                      |+|+=..+..   ...+.+.|+++|+++.++..+..               .+++....+||+|+++||........+.+
T Consensus         4 i~iid~~~s~---~~~~~~~l~~~G~~~~v~~~~~~---------------~~~~~~~~~~dglil~gG~~~~~~~~~~~   65 (195)
T 1qdl_B            4 TLIIDNYDSF---VYNIAQIVGELGSYPIVIRNDEI---------------SIKGIERIDPDRLIISPGPGTPEKREDIG   65 (195)
T ss_dssp             EEEEECSCSS---HHHHHHHHHHTTCEEEEEETTTS---------------CHHHHHHHCCSEEEECCCSSCTTSHHHHT
T ss_pred             EEEEECCCch---HHHHHHHHHhCCCEEEEEeCCCC---------------CHHHHhhCCCCEEEECCCCCChhhhhhhh
Confidence            7766543322   23678899999999988875421               11122212589999988743332221122


Q ss_pred             HHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          167 ILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       167 ~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ...+++++. +.+++|.+||-|.+ +|+.+
T Consensus        66 ~~~~~i~~~-~~~~PvLGIC~G~Q-lL~~~   93 (195)
T 1qdl_B           66 VSLDVIKYL-GKRTPILGVCLGHQ-AIGYA   93 (195)
T ss_dssp             THHHHHHHH-TTTSCEEEETHHHH-HHHHH
T ss_pred             HHHHHHHHh-cCCCcEEEEehHHH-HHHHH
Confidence            346888874 88999999999766 67765

>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}

Probab=96.94  E-value=0.0011  Score=59.46  Aligned_cols=83  Identities=16%  Similarity=0.109  Sum_probs=54.1

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc-cc
Q 012037           85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR-LR  163 (472)
Q Consensus        85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~-l~  163 (472)
                      +||+|+-..|    .+....+.|+++|+++.++...                   ++..  ++|.|++|||...... +.
T Consensus         1 m~i~vl~~~g----~~~~~~~~l~~~G~~~~~~~~~-------------------~~~~--~~dglil~GG~~~~~~~~~   55 (186)
T 2ywj_A            1 MIIGVLAIQG----DVEEHEEAIKKAGYEAKKVKRV-------------------EDLE--GIDALIIPGGESTAIGKLM   55 (186)
T ss_dssp             CEEEEECSSS----CCHHHHHHHHHTTSEEEEECSG-------------------GGGT--TCSEEEECCSCHHHHHHHH
T ss_pred             CEEEEEecCc----chHHHHHHHHHCCCEEEEECCh-------------------HHhc--cCCEEEECCCCchhhhhhh
Confidence            4799986543    2334579999999988776521                   1122  6899999999432211 11


Q ss_pred             CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ....+.++++   +.+++|.+||-|.+ +|+.+
T Consensus        56 ~~~~~~~~i~---~~~~PilGIC~G~Q-ll~~~   84 (186)
T 2ywj_A           56 KKYGLLEKIK---NSNLPILGTCAGMV-LLSKG   84 (186)
T ss_dssp             HHTTHHHHHH---TCCCCEEEETHHHH-HHSSC
T ss_pred             hccCHHHHHH---hcCCcEEEECHHHH-HHHHH
Confidence            1223455665   78999999999755 78776

>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B

Probab=96.92  E-value=0.0019  Score=58.69  Aligned_cols=86  Identities=17%  Similarity=0.217  Sum_probs=56.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHhCC-----CEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc
Q 012037           85 KKVLVPVGFGTEEMEAVIIVDVLRRAG-----AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS  159 (472)
Q Consensus        85 ~kV~ill~~g~~~~e~~~~~~~l~~ag-----~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~  159 (472)
                      +||+|+-+..-...   ...+.|++.|     +++.++...                   ++   .++|.|++|||. ..
T Consensus         1 m~I~iid~~~g~~~---s~~~~l~~~G~~~~~~~~~~~~~~-------------------~~---~~~dglilpG~g-~~   54 (201)
T 1gpw_B            1 MRIGIISVGPGNIM---NLYRGVKRASENFEDVSIELVESP-------------------RN---DLYDLLFIPGVG-HF   54 (201)
T ss_dssp             CEEEEECCSSSCCH---HHHHHHHHHSTTBSSCEEEEECSC-------------------CS---SCCSEEEECCCS-CS
T ss_pred             CEEEEEecCCchHH---HHHHHHHHcCCCCCceEEEEECCC-------------------cc---cCCCEEEECCCC-cH
Confidence            47888865522223   3457888888     787766421                   02   269999999962 21


Q ss_pred             cc-cc--CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCC
Q 012037          160 VR-LR--DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG  197 (472)
Q Consensus       160 ~~-l~--~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aG  197 (472)
                      .. ..  .+..+.++|+++.+++++|.+||.|.. +|+.+.
T Consensus        55 ~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Q-ll~~~~   94 (201)
T 1gpw_B           55 GEGMRRLRENDLIDFVRKHVEDERYVVGVCLGMQ-LLFEES   94 (201)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHH-TTSSEE
T ss_pred             HHHHHHHHhhCHHHHHHHHHHcCCeEEEEChhHH-HHHHhh
Confidence            11 10  111367899999999999999999755 677753

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*

Probab=96.91  E-value=0.0032  Score=62.86  Aligned_cols=87  Identities=14%  Similarity=0.096  Sum_probs=65.6

Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc
Q 012037          288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK  367 (472)
Q Consensus       288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~  367 (472)
                      +||+++=+ |+.    ....+.|..+|.++.++-.+.                ..+++...++|.||++||+..+.   .
T Consensus       191 ~~V~viD~-G~k----~ni~r~L~~~G~~v~vvp~~~----------------~~e~i~~~~~DGliLsGGPgdp~---~  246 (379)
T 1a9x_B          191 FHVVAYDF-GAK----RNILRMLVDRGCRLTIVPAQT----------------SAEDVLKMNPDGIFLSNGPGDPA---P  246 (379)
T ss_dssp             EEEEEEES-SCC----HHHHHHHHHTTEEEEEEETTC----------------CHHHHHTTCCSEEEECCCSBCST---T
T ss_pred             CEEEEEEC-CCh----HHHHHHHHHCCCEEEEEeccC----------------CHHHHhhcCCCEEEEeCCCCChH---H
Confidence            58888877 665    447888999998888774332                12333224689999999974333   3


Q ss_pred             cHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      ....+++|+++.+++++|.+||-|-.+|+.+
T Consensus       247 ~~~~~~~Ir~~~~~~~PILGIClG~QLLa~A  277 (379)
T 1a9x_B          247 CDYAITAIQKFLETDIPVFGICLGHQLLALA  277 (379)
T ss_dssp             CHHHHHHHHHHTTSCCCEEEETHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEECchHHHHHHH
Confidence            4678899999998899999999999999865

>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}

Probab=96.77  E-value=0.00065  Score=62.23  Aligned_cols=87  Identities=17%  Similarity=0.119  Sum_probs=57.5

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ  366 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~  366 (472)
                      .+||+|+=|-.-+.   -.+...|++.|++++++..                   .+++  .++|.||+||+. ......
T Consensus         2 ~~~I~iiD~g~~n~---~si~~al~~~G~~~~v~~~-------------------~~~l--~~~D~lilPG~g-~~~~~~   56 (211)
T 4gud_A            2 TQNVVIIDTGCANI---SSVKFAIERLGYAVTISRD-------------------PQVV--LAADKLFLPGVG-TASEAM   56 (211)
T ss_dssp             -CCEEEECCCCTTH---HHHHHHHHHTTCCEEEECC-------------------HHHH--HHCSEEEECCCS-CHHHHH
T ss_pred             CCEEEEEECCCChH---HHHHHHHHHCCCEEEEECC-------------------HHHH--hCCCEEEECCCC-CHHHHH
Confidence            45788885543333   4567788999998876421                   1233  467999999953 222211


Q ss_pred             ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          367 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       367 ~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      .......+++...+.+++|.+||.|-.+|+.+
T Consensus        57 ~~~~~~~~i~~~~~~~~PvlGIClG~QlL~~~   88 (211)
T 4gud_A           57 KNLTERDLIELVKRVEKPLLGICLGMQLLGKL   88 (211)
T ss_dssp             HHHHHTTCHHHHHHCCSCEEEETHHHHTTSSE
T ss_pred             HHHHhcChHHHHHHcCCCEEEEchhHhHHHHH
Confidence            22223345777788999999999999999865

>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}

Probab=96.72  E-value=0.00054  Score=62.78  Aligned_cols=87  Identities=14%  Similarity=0.059  Sum_probs=54.8

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR  163 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~  163 (472)
                      ++||+|+=+..-   -+..+..+|++.|++++++...                   ++..  .+|.||+||+ +......
T Consensus         2 ~~~I~iiD~g~~---n~~si~~al~~~G~~~~v~~~~-------------------~~l~--~~D~lilPG~-g~~~~~~   56 (211)
T 4gud_A            2 TQNVVIIDTGCA---NISSVKFAIERLGYAVTISRDP-------------------QVVL--AADKLFLPGV-GTASEAM   56 (211)
T ss_dssp             -CCEEEECCCCT---THHHHHHHHHHTTCCEEEECCH-------------------HHHH--HCSEEEECCC-SCHHHHH
T ss_pred             CCEEEEEECCCC---hHHHHHHHHHHCCCEEEEECCH-------------------HHHh--CCCEEEECCC-CCHHHHH
Confidence            457888744322   2355678899999998875311                   1122  5899999996 2332211


Q ss_pred             CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ..-....+++...+.++||.+||.|-. +|+.+
T Consensus        57 ~~~~~~~~i~~~~~~~~PvlGIClG~Q-lL~~~   88 (211)
T 4gud_A           57 KNLTERDLIELVKRVEKPLLGICLGMQ-LLGKL   88 (211)
T ss_dssp             HHHHHTTCHHHHHHCCSCEEEETHHHH-TTSSE
T ss_pred             HHHHhcChHHHHHHcCCCEEEEchhHh-HHHHH
Confidence            122233457777889999999999755 67665

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1

Probab=96.67  E-value=0.0032  Score=58.91  Aligned_cols=93  Identities=14%  Similarity=0.198  Sum_probs=60.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCC
Q 012037           86 KVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDC  165 (472)
Q Consensus        86 kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~  165 (472)
                      ||.|+-  .+.......+.+.|+..|+++.++-.+.+        .      .+.+ ....+|.||+|||..+.......
T Consensus        14 ~~~~i~--~~~~~~~~~i~~~l~~~G~~v~v~~~~~~--------~------~~~~-~l~~~Dglil~GG~~~~~~~~~~   76 (239)
T 1o1y_A           14 RVLAIR--HVEIEDLGMMEDIFREKNWSFDYLDTPKG--------E------KLER-PLEEYSLVVLLGGYMGAYEEEKY   76 (239)
T ss_dssp             EEEEEC--SSTTSSCTHHHHHHHHTTCEEEEECGGGT--------C------CCSS-CGGGCSEEEECCCSCCTTCTTTC
T ss_pred             EEEEEE--CCCCCCchHHHHHHHhCCCcEEEeCCcCc--------c------cccc-chhcCCEEEECCCCccccCCccC
Confidence            455554  44444455788899999998876543321        0      1111 11369999999985333211111


Q ss_pred             ---hHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          166 ---EILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       166 ---~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                         ....++|+++.+++++|.+||-|.. +|+.+
T Consensus        77 ~~l~~~~~~i~~~~~~~~PiLGIC~G~Q-lL~~a  109 (239)
T 1o1y_A           77 PFLKYEFQLIEEILKKEIPFLGICLGSQ-MLAKV  109 (239)
T ss_dssp             THHHHHHHHHHHHHHHTCCEEEETHHHH-HHHHH
T ss_pred             hhHHHHHHHHHHHHHCCCCEEEEchhHH-HHHHH
Confidence               3678999999999999999999765 67765

>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A

Probab=96.59  E-value=0.0013  Score=63.37  Aligned_cols=102  Identities=9%  Similarity=0.056  Sum_probs=63.1

Q ss_pred             CCEEEEE-eCCCCCHHHHHHHHHHHHhCCC----eEEEEEecCCcceecCCCcEEeecC-Ccccc--CCCcccEEEEcCC
Q 012037          287 MPRVLIP-IANGSEEIEIVTIVDILRRAKV----DVVVASVERSTQIVASQGVKIIADK-SISDA--AESVYDLIILPGG  358 (472)
Q Consensus       287 ~~~V~il-~~~g~~~~e~~~~~d~l~~a~~----~v~~vs~~~~~~v~s~~G~~v~~d~-~l~~~--~~~~~D~livpGG  358 (472)
                      .+||+|+ -|.+.... +..+.+.|+.+|+    ++.+...+.. .+...   .+..+. .++++  ...++|.||||||
T Consensus        25 ~~~Iavv~d~~~~~~s-~~si~~~L~~~G~~~~~~v~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~l~~~dgiil~GG   99 (289)
T 2v4u_A           25 ICSIALVGKYTKLRDC-YASVFKALEHSALAINHKLNLMYIDSI-DLEKI---TETEDPVKFHEAWQKLCKADGILVPGG   99 (289)
T ss_dssp             EEEEEEEESCSSCCGG-GHHHHHHHHHHHHHTTEEEEEEEEEGG-GGSHH---HHHHCHHHHHHHHHHHHHCSEEEECSC
T ss_pred             ceEEEEEecCcCCCcc-HHHHHHHHHHhhhhhCCceEEEEechh-hcccc---cccCChhhhhhHHHHHhhCCEEEecCC
Confidence            3588887 55344320 3467778877753    4565555432 11110   000010 01110  0156899999999


Q ss_pred             CcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHH
Q 012037          359 VAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK  397 (472)
Q Consensus       359 ~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~  397 (472)
                      ... .   ....+.++++++.+++++|.+||.|..+|+.
T Consensus       100 ~~~-~---~~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~  134 (289)
T 2v4u_A          100 FGI-R---GTLGKLQAISWARTKKIPFLGVXLGMQLAVI  134 (289)
T ss_dssp             CSS-T---THHHHHHHHHHHHHTTCCEEEETHHHHHHHH
T ss_pred             CCc-h---hHHHHHHHHHHHHHcCCcEEEECccHHHHHH
Confidence            743 2   2367889999999999999999999999986

>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A

Probab=96.58  E-value=0.0012  Score=61.57  Aligned_cols=97  Identities=12%  Similarity=0.071  Sum_probs=65.4

Q ss_pred             CCCEEEEEeCCC---CCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch
Q 012037          286 RMPRVLIPIANG---SEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA  362 (472)
Q Consensus       286 ~~~~V~il~~~g---~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~  362 (472)
                      ..+||+|+-|-.   -...-+......|++.|+++..+...               +...+++  .+.|.|++|||....
T Consensus        30 ~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~---------------~d~~~~l--~~ad~I~lpGG~~~~   92 (229)
T 1fy2_A           30 GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRV---------------ADPLAAI--EKAEIIIVGGGNTFQ   92 (229)
T ss_dssp             TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSS---------------SCHHHHH--HHCSEEEECCSCHHH
T ss_pred             CCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEecc---------------ccHHHHH--hcCCEEEECCCcHHH
Confidence            357899987752   22233556778899988876544211               1122344  568999999986211


Q ss_pred             -hcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC
Q 012037          363 -ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG  399 (472)
Q Consensus       363 -~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG  399 (472)
                       ....+...+.+.|+++.++|++++++|.|..+|++..
T Consensus        93 ~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG~~~l~~~~  130 (229)
T 1fy2_A           93 LLKESRERGLLAPMADRVKRGALYIGWSAGANLACPTI  130 (229)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHHTSSBS
T ss_pred             HHHHHHHCChHHHHHHHHHcCCEEEEECHHHHhhcccc
Confidence             1122344678899999999999999999999998743

>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=96.41  E-value=0.0024  Score=58.40  Aligned_cols=99  Identities=14%  Similarity=0.091  Sum_probs=66.9

Q ss_pred             CCEEEEEeCCCC---CHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcc-h
Q 012037          287 MPRVLIPIANGS---EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG-A  362 (472)
Q Consensus       287 ~~~V~il~~~g~---~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~-~  362 (472)
                      .+||+++-|-.-   ...-+......|++.|++++++.....           .++...+.+  .+.|.|++|||... .
T Consensus        27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~-----------~~~~~~~~l--~~ad~I~l~GG~~~~l   93 (206)
T 3l4e_A           27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATE-----------SLGEITTKL--RKNDFIYVTGGNTFFL   93 (206)
T ss_dssp             TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTS-----------CHHHHHHHH--HHSSEEEECCSCHHHH
T ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCC-----------ChHHHHHHH--HhCCEEEECCCCHHHH
Confidence            479999876421   112345678999999998876643221           011111233  56799999998621 1


Q ss_pred             hcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          363 ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       363 ~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      ....+...+.+.|++..++|++++++|.|+.+++..
T Consensus        94 ~~~L~~~gl~~~l~~~~~~G~p~~G~sAGa~~l~~~  129 (206)
T 3l4e_A           94 LQELKRTGADKLILEEIAAGKLYIGESAGAVITSPN  129 (206)
T ss_dssp             HHHHHHHTHHHHHHHHHHTTCEEEEETHHHHTTSSB
T ss_pred             HHHHHHCChHHHHHHHHHcCCeEEEECHHHHHhccc
Confidence            122345678899999999999999999999999753

>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}

Probab=96.05  E-value=0.0019  Score=59.59  Aligned_cols=88  Identities=17%  Similarity=0.092  Sum_probs=54.3

Q ss_pred             CCEEEEEeCC-CCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037          287 MPRVLIPIAN-GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  365 (472)
Q Consensus       287 ~~~V~il~~~-g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~  365 (472)
                      .++|+|+=+. ++.    ..+...|+.+|+++.++..+..                .+++...++|.||+|||...... 
T Consensus        24 ~~~I~iiD~g~~~~----~~i~~~l~~~G~~~~vv~~~~~----------------~~~l~~~~~dglil~Gg~~~~~~-   82 (218)
T 2vpi_A           24 EGAVVILDAGAQYG----KVIDRRVRELFVQSEIFPLETP----------------AFAIKEQGFRAIIISGGPNSVYA-   82 (218)
T ss_dssp             TTCEEEEECSTTTT----HHHHHHHHHTTCCEEEECTTCC----------------HHHHHHHTCSEEEEEC--------
T ss_pred             CCeEEEEECCCchH----HHHHHHHHHCCCEEEEEECCCC----------------hHHHhhcCCCEEEECCCCccccc-
Confidence            3689999665 453    3577888999988887754431                22332246999999999632211 


Q ss_pred             cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                         +....+.+...+++++|.+||.|..+|+.+
T Consensus        83 ---~~~~~~~~~~~~~~~PilGIC~G~Qll~~~  112 (218)
T 2vpi_A           83 ---EDAPWFDPAIFTIGKPVLGICYGMQMMNKV  112 (218)
T ss_dssp             -----CCCCCGGGGTSSCCEEEETHHHHHHHHH
T ss_pred             ---ccchhHHHHHHHcCCCEEEEcHHHHHHHHH
Confidence               111112233346789999999999999875

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1

Probab=95.93  E-value=0.013  Score=53.57  Aligned_cols=89  Identities=18%  Similarity=0.111  Sum_probs=55.8

Q ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCC-cccccc
Q 012037           83 PPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGG-MPGSVR  161 (472)
Q Consensus        83 ~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG-~~~~~~  161 (472)
                      .|+||.++=+.+-.   ...+.+.|+++|+++.++..+.                ..++..  .+|+|||||| ......
T Consensus        12 ~~~~i~~id~~~~~---~~~~~~~l~~~G~~~~vv~~~~----------------~~~~l~--~~DglIl~GG~p~~~~~   70 (212)
T 2a9v_A           12 HMLKIYVVDNGGQW---THREWRVLRELGVDTKIVPNDI----------------DSSELD--GLDGLVLSGGAPNIDEE   70 (212)
T ss_dssp             CCCBEEEEEESCCT---TCHHHHHHHHTTCBCCEEETTS----------------CGGGGT--TCSEEEEEEECSCGGGT
T ss_pred             ccceEEEEeCCCcc---HHHHHHHHHHCCCEEEEEeCCC----------------CHHHHh--CCCEEEECCCCCCCCcc
Confidence            36688777654433   2346788889998877765431                112233  4999999999 433332


Q ss_pred             ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          162 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       162 l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ....+.+.+++   .+++++|.+||-|.. +|+.+
T Consensus        71 ~~~~~~l~~~~---~~~~~PiLGIC~G~Q-ll~~~  101 (212)
T 2a9v_A           71 LDKLGSVGKYI---DDHNYPILGICVGAQ-FIALH  101 (212)
T ss_dssp             GGGHHHHHHHH---HHCCSCEEEETHHHH-HHHHH
T ss_pred             cccchhHHHHH---HhCCCCEEEEChHHH-HHHHH
Confidence            21223344443   578999999999766 67765

>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A

Probab=95.87  E-value=0.019  Score=55.39  Aligned_cols=112  Identities=13%  Similarity=0.157  Sum_probs=63.7

Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhCC--CeEEEEEecCCcceecC-C-CcEEeecCCccccCCCcccEEEEcCCCcc
Q 012037          286 RMPRVLIPIANGSEEIEIVTIVDILRRAK--VDVVVASVERSTQIVAS-Q-GVKIIADKSISDAAESVYDLIILPGGVAG  361 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~--~~v~~vs~~~~~~v~s~-~-G~~v~~d~~l~~~~~~~~D~livpGG~~~  361 (472)
                      +++||+|+-...-....-..+...|....  ++++++....+..-.++ . =-++..  .++++...+||.+||-|+...
T Consensus        34 rplkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~--~f~~~~~~~~DglIITGap~~  111 (301)
T 2vdj_A           34 RALKIAILNLMPTKQETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYK--TFRDIENEKFDGLIITGAPVE  111 (301)
T ss_dssp             CCEEEEEECCCSSHHHHHHHHHHHHTCSSSCEEEEEECCCC------------CCEE--CHHHHTTSCEEEEEECCCTTT
T ss_pred             CCceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhccc--CcccccccccCEEEECCCCCc
Confidence            45799999764332222234555555544  55555555432111111 1 111111  355555578999999998732


Q ss_pred             hh---cccccHHHHHHHHHHHHcCCeEEEEchhHHH-HHHcC
Q 012037          362 AE---RLQKSRILKKLLKEQKVAGRIYGAVCSSPIV-LHKHG  399 (472)
Q Consensus       362 ~~---~~~~~~~l~~~L~~~~~~g~~v~aic~G~~l-LA~aG  399 (472)
                      ..   ...--+++.++++...++++.+.+||-|..+ +..+|
T Consensus       112 ~~~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~~~  153 (301)
T 2vdj_A          112 TLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHY  153 (301)
T ss_dssp             TSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH
T ss_pred             CCCcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHHhC
Confidence            21   1122256778888888899999999999998 44443

>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A

Probab=95.87  E-value=0.017  Score=55.69  Aligned_cols=116  Identities=13%  Similarity=0.138  Sum_probs=63.2

Q ss_pred             CCCCcEEEEEeCCCCcHHHHHHHHHHHHhCC--CEEEEEeeCCCcceeccCCceeeeC-CCcCCCCCCcccEEEEcCCcc
Q 012037           81 AVPPKKVLVPVGFGTEEMEAVIIVDVLRRAG--AQVTMASVEPQLEVEASSGTRLVAD-TSISNCSHQVFDLIALPGGMP  157 (472)
Q Consensus        81 ~~~~~kV~ill~~g~~~~e~~~~~~~l~~ag--~~v~~vs~~~g~~v~~~~G~~v~~d-~~~~~~~~~~~D~vivpGG~~  157 (472)
                      .++++||+||-...-....-..+...|....  ++++++....+ ......-..+..- .++++.....||++||.|+..
T Consensus        32 ~irplkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~-~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGap~  110 (301)
T 2vdj_A           32 DIRALKIAILNLMPTKQETEAQLLRLIGNTPLQLDVHLLHMESH-LSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPV  110 (301)
T ss_dssp             TSCCEEEEEECCCSSHHHHHHHHHHHHTCSSSCEEEEEECCCC-------------CCEECHHHHTTSCEEEEEECCCTT
T ss_pred             CCCCceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEeccCC-CCCCccHHHHhhcccCcccccccccCEEEECCCCC
Confidence            5778999999864333222233444444444  55555555433 1111000111110 123333345799999999842


Q ss_pred             ccccc---cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCC
Q 012037          158 GSVRL---RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG  197 (472)
Q Consensus       158 ~~~~l---~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aG  197 (472)
                      .....   .--.++.++++...++++++.+||-|...++..+|
T Consensus       111 ~~~~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~~~  153 (301)
T 2vdj_A          111 ETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHY  153 (301)
T ss_dssp             TTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH
T ss_pred             cCCCcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHHhC
Confidence            22111   11267888888888999999999998775355443

>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}

Probab=95.84  E-value=0.024  Score=54.02  Aligned_cols=96  Identities=11%  Similarity=0.092  Sum_probs=60.5

Q ss_pred             CEEEEEe-C-CCCCHHHHHHHHHHHHhC----CCeEEEEEecCCcceecCCCcEEeecCCc-cccCCCcccEEEEcCCCc
Q 012037          288 PRVLIPI-A-NGSEEIEIVTIVDILRRA----KVDVVVASVERSTQIVASQGVKIIADKSI-SDAAESVYDLIILPGGVA  360 (472)
Q Consensus       288 ~~V~il~-~-~g~~~~e~~~~~d~l~~a----~~~v~~vs~~~~~~v~s~~G~~v~~d~~l-~~~~~~~~D~livpGG~~  360 (472)
                      .+|+|+. | ..+.+ .+..+...|..+    +.+++++..+.. .+....+..      + +++  .++|.||+|||..
T Consensus         9 ~~Iaivg~y~~~~~d-ny~S~~~aL~~~g~~~~~~v~v~~~~~~-~~~~~~~~~------~~~~~--~~~dgiil~GG~~   78 (273)
T 2w7t_A            9 VRIAFVGKYLQDAGD-TYFSVLQCFEHCQIALQVRLDILYVDSE-ELEGPNADE------ARKAL--LGCDGIFVPGGFG   78 (273)
T ss_dssp             EEEEEEECCHHHHTT-TTHHHHHHHHHHHHHHTCCEEEEEEEGG-GGSSTTTHH------HHHHH--HTCSEEEECCCCT
T ss_pred             CEEEEEeCCCcCCch-HHHHHHHHHHHHHHhcCCceEEeccChh-hcccccchh------HHHHH--hhCCEEEecCCCC
Confidence            6888884 4 11122 344555555443    466777766643 222111100      2 223  5689999999963


Q ss_pred             chhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHH
Q 012037          361 GAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK  397 (472)
Q Consensus       361 ~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~  397 (472)
                       ..   ..+..+++++.+.+++++|.+||-|..+|+.
T Consensus        79 -~~---~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~  111 (273)
T 2w7t_A           79 -NR---GVDGKCAAAQVARMNNIPYFGVXLGMQVAVI  111 (273)
T ss_dssp             -TT---THHHHHHHHHHHHHHTCCEEEETHHHHHHHH
T ss_pred             -Cc---CchhHHHHHHHHHHCCCcEEEECcCHHHHHH
Confidence             22   3346778999988899999999999999975

>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}

Probab=95.84  E-value=0.017  Score=55.92  Aligned_cols=116  Identities=16%  Similarity=0.149  Sum_probs=65.8

Q ss_pred             CCCCcEEEEEeCCCCcHHHHHHHHHHHHhCC--CEEEEEeeCCCcceeccCCceeee-CCCcCCCCCCcccEEEEcCCcc
Q 012037           81 AVPPKKVLVPVGFGTEEMEAVIIVDVLRRAG--AQVTMASVEPQLEVEASSGTRLVA-DTSISNCSHQVFDLIALPGGMP  157 (472)
Q Consensus        81 ~~~~~kV~ill~~g~~~~e~~~~~~~l~~ag--~~v~~vs~~~g~~v~~~~G~~v~~-d~~~~~~~~~~~D~vivpGG~~  157 (472)
                      .++++||+||-...-....-..+...|....  ++++++....+ ......-..+.. -.++++.....||++||.|+..
T Consensus        44 dirplkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~-~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGsP~  122 (312)
T 2h2w_A           44 DIRPLEILILNLMPDKIKTEIQLLRLLGNTPLQVNVTLLYTETH-KPKHTPIEHILKFYTTFSAVKDRKFDGFIITGAPV  122 (312)
T ss_dssp             -CCCEEEEEECCCSSHHHHHHHHHHHHHSSSSCEEEEEECCSCC-CCCSSCHHHHHHHCBCGGGTTTCCEEEEEECCCSC
T ss_pred             CCCCceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEEccCC-CCCCccHHHHhhccCCcccccccCcCEEEECCCCC
Confidence            5778999999864333222234555555544  45555555433 100000000100 0134555455799999999842


Q ss_pred             ccccc---cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCC
Q 012037          158 GSVRL---RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG  197 (472)
Q Consensus       158 ~~~~l---~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aG  197 (472)
                      .....   .--.++.++++...++++++.+||-|...++..+|
T Consensus       123 ~~~~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~~~  165 (312)
T 2h2w_A          123 ELLPFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYYFY  165 (312)
T ss_dssp             TTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH
T ss_pred             CCCCCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHHhC
Confidence            22111   11267888888888999999999998775355543

>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}

Probab=95.80  E-value=0.02  Score=54.00  Aligned_cols=79  Identities=16%  Similarity=0.211  Sum_probs=53.8

Q ss_pred             HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCc-chh-------------cccccHH
Q 012037          305 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVA-GAE-------------RLQKSRI  370 (472)
Q Consensus       305 ~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~-~~~-------------~~~~~~~  370 (472)
                      ..++.++++|....++.....              ..+.+. .+++|.|+++||.. .+.             ...++..
T Consensus        32 ~~~~~l~~aG~~pv~lp~~~~--------------~~~~~~-l~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~   96 (254)
T 3fij_A           32 RYVDAIQKVGGFPIALPIDDP--------------STAVQA-ISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSY   96 (254)
T ss_dssp             HHHHHHHHHTCEEEEECCCCG--------------GGHHHH-HHTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHH
T ss_pred             HHHHHHHHCCCEEEEEeCCCc--------------hHHHHH-HhhCCEEEECCCCCCChhhcCCccCcccCCcChhhhHH
Confidence            356677778887777654431              012211 14689999999952 011             1122345


Q ss_pred             HHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          371 LKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       371 l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      .+++|+++.+++++|.+||-|..+|+.+
T Consensus        97 ~~~lir~a~~~~~PiLGIC~G~Qll~~a  124 (254)
T 3fij_A           97 EIALVRAALDAGKPIFAICRGMQLVNVA  124 (254)
T ss_dssp             HHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEECHHHHHHHHH
Confidence            7899999999999999999999999876

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*

Probab=95.78  E-value=0.026  Score=56.28  Aligned_cols=88  Identities=19%  Similarity=0.162  Sum_probs=62.8

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR  163 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~  163 (472)
                      ..||+++=+ |+.    ....+.|+++|+++.++-.+..                .+++...++|.||++||...+.   
T Consensus       190 ~~~V~viD~-G~k----~ni~r~L~~~G~~v~vvp~~~~----------------~e~i~~~~~DGliLsGGPgdp~---  245 (379)
T 1a9x_B          190 PFHVVAYDF-GAK----RNILRMLVDRGCRLTIVPAQTS----------------AEDVLKMNPDGIFLSNGPGDPA---  245 (379)
T ss_dssp             CEEEEEEES-SCC----HHHHHHHHHTTEEEEEEETTCC----------------HHHHHTTCCSEEEECCCSBCST---
T ss_pred             CCEEEEEEC-CCh----HHHHHHHHHCCCEEEEEeccCC----------------HHHHhhcCCCEEEEeCCCCChH---
Confidence            357888876 654    4478889999999888854421                0111112599999999943332   


Q ss_pred             CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      .+...+++|+++.+++++|.+||-|-+ +|+.+
T Consensus       246 ~~~~~~~~Ir~~~~~~~PILGIClG~Q-LLa~A  277 (379)
T 1a9x_B          246 PCDYAITAIQKFLETDIPVFGICLGHQ-LLALA  277 (379)
T ss_dssp             TCHHHHHHHHHHTTSCCCEEEETHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCEEEECchHH-HHHHH
Confidence            357788999999999999999999766 67664

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=95.71  E-value=0.0095  Score=62.77  Aligned_cols=89  Identities=19%  Similarity=0.185  Sum_probs=62.0

Q ss_pred             CCEEEEEeCC-CCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCC-Ccchh-
Q 012037          287 MPRVLIPIAN-GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGG-VAGAE-  363 (472)
Q Consensus       287 ~~~V~il~~~-g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG-~~~~~-  363 (472)
                      |++|+|+-|. ++.    ....+.|+++|+++.++....              +   ..+  .++|.||+||| ..... 
T Consensus         4 m~~I~Iid~~~g~~----~~~~~~l~~~G~~~~vv~~~~--------------~---~~l--~~~DglILpGgG~~~~~~   60 (555)
T 1jvn_A            4 MPVVHVIDVESGNL----QSLTNAIEHLGYEVQLVKSPK--------------D---FNI--SGTSRLILPGVGNYGHFV   60 (555)
T ss_dssp             SCEEEEECCSCSCC----HHHHHHHHHTTCEEEEESSGG--------------G---CCS--TTCSCEEEEECSCHHHHH
T ss_pred             CCEEEEEECCCCCH----HHHHHHHHHCCCEEEEECCcc--------------c---ccc--ccCCEEEECCCCchHhHh
Confidence            6789999875 332    356788899999888764211              0   123  56899999994 31111 


Q ss_pred             cccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          364 RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       364 ~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      ....+..+.++|+++.+++++|.+||-|..+|+.+
T Consensus        61 ~~l~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~a   95 (555)
T 1jvn_A           61 DNLFNRGFEKPIREYIESGKPIMGIXVGLQALFAG   95 (555)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCEEEEEHHHHTTEEE
T ss_pred             hhhhhccHHHHHHHHHHcCCcEEEEchhhhhhhhh
Confidence            01112246789999999999999999999999985

>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=95.58  E-value=0.0067  Score=55.40  Aligned_cols=98  Identities=18%  Similarity=0.093  Sum_probs=62.8

Q ss_pred             CcEEEEEeCCCC--c-HHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc-c
Q 012037           84 PKKVLVPVGFGT--E-EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG-S  159 (472)
Q Consensus        84 ~~kV~ill~~g~--~-~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~-~  159 (472)
                      .+||+|+-+-.-  + ..-+....++|++.|++++.+.....           .++...+.+.  ..|+|++|||... .
T Consensus        27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~-----------~~~~~~~~l~--~ad~I~l~GG~~~~l   93 (206)
T 3l4e_A           27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATE-----------SLGEITTKLR--KNDFIYVTGGNTFFL   93 (206)
T ss_dssp             TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTS-----------CHHHHHHHHH--HSSEEEECCSCHHHH
T ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCC-----------ChHHHHHHHH--hCCEEEECCCCHHHH
Confidence            578998875322  1 12345688999999998877643310           0000001122  5899999998421 1


Q ss_pred             ccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhc
Q 012037          160 VRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLP  195 (472)
Q Consensus       160 ~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~  195 (472)
                      ........+.+.|++.+++|++++++|+| +.+|+.
T Consensus        94 ~~~L~~~gl~~~l~~~~~~G~p~~G~sAG-a~~l~~  128 (206)
T 3l4e_A           94 LQELKRTGADKLILEEIAAGKLYIGESAG-AVITSP  128 (206)
T ss_dssp             HHHHHHHTHHHHHHHHHHTTCEEEEETHH-HHTTSS
T ss_pred             HHHHHHCChHHHHHHHHHcCCeEEEECHH-HHHhcc
Confidence            12234567888999999999999999996 546654

>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A

Probab=95.57  E-value=0.0068  Score=56.32  Aligned_cols=96  Identities=17%  Similarity=0.075  Sum_probs=61.3

Q ss_pred             CcEEEEEeCCC--Cc-HHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc-c
Q 012037           84 PKKVLVPVGFG--TE-EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG-S  159 (472)
Q Consensus        84 ~~kV~ill~~g--~~-~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~-~  159 (472)
                      .+||+|+-+..  .+ ..-+..+.++|++.|+++..+....              | ..+.+.  +.|+|++|||... .
T Consensus        31 ~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~--------------d-~~~~l~--~ad~I~lpGG~~~~~   93 (229)
T 1fy2_A           31 RRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVA--------------D-PLAAIE--KAEIIIVGGGNTFQL   93 (229)
T ss_dssp             CCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSS--------------C-HHHHHH--HCSEEEECCSCHHHH
T ss_pred             CCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccc--------------c-HHHHHh--cCCEEEECCCcHHHH
Confidence            57899987652  22 2334567888988898765442110              0 112222  5899999998421 1


Q ss_pred             ccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCC
Q 012037          160 VRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG  197 (472)
Q Consensus       160 ~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aG  197 (472)
                      ........+.+.|++.+++|++++++|+| +.+|++..
T Consensus        94 ~~~l~~~gl~~~l~~~~~~G~p~~G~sAG-~~~l~~~~  130 (229)
T 1fy2_A           94 LKESRERGLLAPMADRVKRGALYIGWSAG-ANLACPTI  130 (229)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCEEEEETHH-HHHTSSBS
T ss_pred             HHHHHHCChHHHHHHHHHcCCEEEEECHH-HHhhcccc
Confidence            12223456778899999999999999996 55677643

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=95.56  E-value=0.025  Score=58.25  Aligned_cols=155  Identities=12%  Similarity=0.034  Sum_probs=88.0

Q ss_pred             EEeCCEEeCCCCCChHHHHHHHHHHHhCchhHHhhhhccccccCCc--chhhhccccccc-ccCCCCEEEEEeCC-CCCH
Q 012037          225 HVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADN--SLKKEEFNEVEW-FFDRMPRVLIPIAN-GSEE  300 (472)
Q Consensus       225 v~Dg~iiTa~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~~~~~--~~~~~~~n~~~~-~~~~~~~V~il~~~-g~~~  300 (472)
                      |...+++...+..+-.+.=+.    +..+...+.+.+.|-++....  .+|..-.+.+.- +.....+|+++--- +.. 
T Consensus       232 V~~~~VI~i~DvdtiY~vpl~----L~~qGl~~~~~~~l~l~~~~~~~~~w~~~~~~~~~~~~~~~v~IalVGKY~~l~-  306 (535)
T 3nva_A          232 VKVDHIVSSYDVETSYEVPII----LESQKLVSKILSRLKLEDRQVDLTDWISFVNNIKGINSKKTINIALVGKYTKLK-  306 (535)
T ss_dssp             CCGGGEEEEECCSCGGGHHHH----HHHHTHHHHHHHHTTCCCCCCCCHHHHHHHHHHHTTTCCCEEEEEEEESCTTSG-
T ss_pred             CChhceEecCCCChHHHhHHH----HHHCCcHHHHHHHcCCCCCCCCHHHHHHHHHHhhccCCCCeeEEEEEecCcCCc-
Confidence            344678888777655443233    333455666667776653221  122211111110 12344678877542 332 


Q ss_pred             HHHHHHHHHHHhCC----CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHH
Q 012037          301 IEIVTIVDILRRAK----VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLK  376 (472)
Q Consensus       301 ~e~~~~~d~l~~a~----~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~  376 (472)
                      -.+..+.+.|..++    .++++.-.+.. .+... +.     ...+++  .++|.|++|||.+. .   .....+++++
T Consensus       307 DaY~Sv~eAL~hag~~~~~~V~I~wIds~-~l~~~-~~-----~~~~~L--~~~DgIIlpGG~G~-~---~~~g~i~~ir  373 (535)
T 3nva_A          307 DSYISIKEAIYHASAYIGVRPKLIWIEST-DLESD-TK-----NLNEIL--GNVNGIIVLPGFGS-R---GAEGKIKAIK  373 (535)
T ss_dssp             GGGHHHHHHHHHHHHHTTCEEEEEEEEGG-GGCCS-SS-----CCTTTT--TSCSEEEECCCCSS-T---THHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHcCCCeEEEEecch-hcccc-cc-----chhhhc--cCCCEEEECCCCCC-c---cHHHHHHHHH
Confidence            23345666666654    55665544432 12111 10     012333  67999999999743 2   3467889999


Q ss_pred             HHHHcCCeEEEEchhHHHHHH
Q 012037          377 EQKVAGRIYGAVCSSPIVLHK  397 (472)
Q Consensus       377 ~~~~~g~~v~aic~G~~lLA~  397 (472)
                      .+.++++++.+||-|..+|+.
T Consensus       374 ~a~~~~~PiLGIClG~Qll~v  394 (535)
T 3nva_A          374 YAREHNIPFLGICFGFQLSIV  394 (535)
T ss_dssp             HHHHHTCCEEEETHHHHHHHH
T ss_pred             HHHHcCCcEEEECcchhHHHH
Confidence            999999999999999988764

>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}

Probab=95.55  E-value=0.073  Score=51.51  Aligned_cols=112  Identities=13%  Similarity=0.092  Sum_probs=65.2

Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhCC--CeEEEEEecCCcceecCC--CcEEeecCCccccCCCcccEEEEcCCCcc
Q 012037          286 RMPRVLIPIANGSEEIEIVTIVDILRRAK--VDVVVASVERSTQIVASQ--GVKIIADKSISDAAESVYDLIILPGGVAG  361 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~--~~v~~vs~~~~~~v~s~~--G~~v~~d~~l~~~~~~~~D~livpGG~~~  361 (472)
                      +++||+|+-...-....-..+...|....  ++++++....+..-.++.  =-++.  .+++++...+||.+||-|+...
T Consensus        46 rplkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y--~~f~~~~~~~~DglIITGsP~~  123 (312)
T 2h2w_A           46 RPLEILILNLMPDKIKTEIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFY--TTFSAVKDRKFDGFIITGAPVE  123 (312)
T ss_dssp             CCEEEEEECCCSSHHHHHHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHC--BCGGGTTTCCEEEEEECCCSCT
T ss_pred             CCceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhcc--CCcccccccCcCEEEECCCCCC
Confidence            45799999764332222245566666555  455555444320000000  00011  1466655578999999999732


Q ss_pred             hh---cccccHHHHHHHHHHHHcCCeEEEEchhHHH-HHHcC
Q 012037          362 AE---RLQKSRILKKLLKEQKVAGRIYGAVCSSPIV-LHKHG  399 (472)
Q Consensus       362 ~~---~~~~~~~l~~~L~~~~~~g~~v~aic~G~~l-LA~aG  399 (472)
                      ..   ...--+++.++++...++++.+.+||-|..+ +..+|
T Consensus       124 ~~~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~~~  165 (312)
T 2h2w_A          124 LLPFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYYFY  165 (312)
T ss_dssp             TSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH
T ss_pred             CCCCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHHhC
Confidence            21   1122256778888777899999999999998 44443

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}

Probab=95.49  E-value=0.056  Score=56.83  Aligned_cols=92  Identities=15%  Similarity=0.075  Sum_probs=60.5

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ  366 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~  366 (472)
                      ..+|+|+=|-.-..   -.+...|++.|..++++..+.                .++++...++|.||+|||....... 
T Consensus         7 ~~~IlilD~Gs~~~---~~I~r~lre~Gv~~eiv~~~~----------------~~~~i~~~~~dgIIlsGGp~s~~~~-   66 (556)
T 3uow_A            7 YDKILVLNFGSQYF---HLIVKRLNNIKIFSETKDYGV----------------ELKDIKDMNIKGVILSGGPYSVTEA-   66 (556)
T ss_dssp             CCEEEEEESSCTTH---HHHHHHHHHTTCCEEEEETTC----------------CGGGTTTSCEEEEEECCCSCCTTST-
T ss_pred             CCEEEEEECCCccH---HHHHHHHHHCCCeEEEEECCC----------------CHHHHhhcCCCEEEECCCCCccccc-
Confidence            36788886654343   356778888998888775432                2344433478999999997433211 


Q ss_pred             ccHHH-HHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          367 KSRIL-KKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       367 ~~~~l-~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      ..+.+ ..+++.+.+++++|.+||-|..+|+.+
T Consensus        67 ~~~~~~~~l~~~a~~~g~PvLGIC~G~QlLa~~   99 (556)
T 3uow_A           67 GSPHLKKEVFEYFLEKKIPIFGICYGMQEIAVQ   99 (556)
T ss_dssp             TCCCCCHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred             CCcchhHHHHHHhhhcCCCEEEECHHHHHHHHH
Confidence            11111 234444567799999999999999976

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=95.45  E-value=0.011  Score=62.41  Aligned_cols=88  Identities=16%  Similarity=0.049  Sum_probs=59.7

Q ss_pred             CcEEEEEeCC-CCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037           84 PKKVLVPVGF-GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL  162 (472)
Q Consensus        84 ~~kV~ill~~-g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l  162 (472)
                      |++|+|+-+. ++    +....+.|+++|+++.++....  .               ....  .+|.|++||| +.....
T Consensus         4 m~~I~Iid~~~g~----~~~~~~~l~~~G~~~~vv~~~~--~---------------~~l~--~~DglILpGg-G~~~~~   59 (555)
T 1jvn_A            4 MPVVHVIDVESGN----LQSLTNAIEHLGYEVQLVKSPK--D---------------FNIS--GTSRLILPGV-GNYGHF   59 (555)
T ss_dssp             SCEEEEECCSCSC----CHHHHHHHHHTTCEEEEESSGG--G---------------CCST--TCSCEEEEEC-SCHHHH
T ss_pred             CCEEEEEECCCCC----HHHHHHHHHHCCCEEEEECCcc--c---------------cccc--cCCEEEECCC-CchHhH
Confidence            5789999764 22    2457888999999888765221  0               0122  6899999995 122111


Q ss_pred             ---cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          163 ---RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       163 ---~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                         ..+..+.++|+++.+.+++|.+||.|.+ +|+.+
T Consensus        60 ~~~l~~~~~~~~i~~~~~~g~PiLGIC~G~Q-lL~~a   95 (555)
T 1jvn_A           60 VDNLFNRGFEKPIREYIESGKPIMGIXVGLQ-ALFAG   95 (555)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCEEEEEHHHH-TTEEE
T ss_pred             hhhhhhccHHHHHHHHHHcCCcEEEEchhhh-hhhhh
Confidence               1122357889999999999999999755 77775

>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}

Probab=95.01  E-value=0.0059  Score=56.28  Aligned_cols=88  Identities=15%  Similarity=0.037  Sum_probs=52.2

Q ss_pred             CcEEEEEeC-CCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037           84 PKKVLVPVG-FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL  162 (472)
Q Consensus        84 ~~kV~ill~-~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l  162 (472)
                      .+||+|+=+ +++.    ..+...|+++|+++.++..+.. .               ++.....||+|++|||...... 
T Consensus        24 ~~~I~iiD~g~~~~----~~i~~~l~~~G~~~~vv~~~~~-~---------------~~l~~~~~dglil~Gg~~~~~~-   82 (218)
T 2vpi_A           24 EGAVVILDAGAQYG----KVIDRRVRELFVQSEIFPLETP-A---------------FAIKEQGFRAIIISGGPNSVYA-   82 (218)
T ss_dssp             TTCEEEEECSTTTT----HHHHHHHHHTTCCEEEECTTCC-H---------------HHHHHHTCSEEEEEC--------
T ss_pred             CCeEEEEECCCchH----HHHHHHHHHCCCEEEEEECCCC-h---------------HHHhhcCCCEEEECCCCccccc-
Confidence            368999955 4442    3567889999998888765531 0               1111135999999999432211 


Q ss_pred             cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                         .....+.++..+.+++|.+||.|.+ +|+.+
T Consensus        83 ---~~~~~~~~~~~~~~~PilGIC~G~Q-ll~~~  112 (218)
T 2vpi_A           83 ---EDAPWFDPAIFTIGKPVLGICYGMQ-MMNKV  112 (218)
T ss_dssp             -----CCCCCGGGGTSSCCEEEETHHHH-HHHHH
T ss_pred             ---ccchhHHHHHHHcCCCEEEEcHHHH-HHHHH
Confidence               1111123344578999999999766 67764

>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*

Probab=94.68  E-value=0.098  Score=55.87  Aligned_cols=90  Identities=22%  Similarity=0.240  Sum_probs=62.4

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ  366 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~  366 (472)
                      .++|+|+=+.+..   ...+...|+..|++++++-.+..                 .+.  .++|.|||+||........
T Consensus       446 Gk~IlviD~gdsf---~~~l~~~l~~~G~~v~Vv~~d~~-----------------~~~--~~~DgIIlsGGPg~p~d~~  503 (645)
T 3r75_A          446 GCRALIVDAEDHF---TAMIAQQLSSLGLATEVCGVHDA-----------------VDL--ARYDVVVMGPGPGDPSDAG  503 (645)
T ss_dssp             TCEEEEEESSCTH---HHHHHHHHHHTTCEEEEEETTCC-----------------CCG--GGCSEEEECCCSSCTTCTT
T ss_pred             CCEEEEEECCccH---HHHHHHHHHHCCCEEEEEECCCc-----------------ccc--cCCCEEEECCCCCChhhhh
Confidence            3677777443322   23577888899999887755431                 112  4689999999875433221


Q ss_pred             --ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          367 --KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       367 --~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                        .-..+.++|++..+.+++|.+||-|..+|+.+
T Consensus       504 ~p~i~~~~~lI~~a~~~~iPiLGIClG~QlLa~a  537 (645)
T 3r75_A          504 DPRIARLYAWLRHLIDEGKPFMAVCLSHQILNAI  537 (645)
T ss_dssp             SHHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHCCCCEEEECHHHHHHHHH
Confidence              11246788898888999999999999999865

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1

Probab=94.56  E-value=0.051  Score=52.88  Aligned_cols=97  Identities=19%  Similarity=0.189  Sum_probs=59.8

Q ss_pred             CCEEEEEeCCCCCH-H-H------HHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCC
Q 012037          287 MPRVLIPIANGSEE-I-E------IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGG  358 (472)
Q Consensus       287 ~~~V~il~~~g~~~-~-e------~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG  358 (472)
                      .+.|+|....+... . +      .....+.|+.+|.++.++..+..             ...+.+. ..++|.||+|||
T Consensus        30 ~P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~-------------~~~i~~~-l~~~dglil~GG   95 (315)
T 1l9x_A           30 KPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLT-------------EKDYEIL-FKSINGILFPGG   95 (315)
T ss_dssp             CCEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCC-------------HHHHHHH-HHHSSEEEECCC
T ss_pred             CCEEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEEEecCCC-------------HHHHHHH-HhcCCEEEEeCC
Confidence            36789887654322 0 0      12457888888988877754321             0011111 146899999999


Q ss_pred             Ccchhcc---cccHHHHHHHHHHHHcC--CeEEEEchhHHHHHH
Q 012037          359 VAGAERL---QKSRILKKLLKEQKVAG--RIYGAVCSSPIVLHK  397 (472)
Q Consensus       359 ~~~~~~~---~~~~~l~~~L~~~~~~g--~~v~aic~G~~lLA~  397 (472)
                      .......   .....++++++++.++|  ++|.+||-|..+|+.
T Consensus        96 ~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~  139 (315)
T 1l9x_A           96 SVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSL  139 (315)
T ss_dssp             CCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHH
T ss_pred             CcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHHHHHHH
Confidence            6332111   11235677777776664  899999999999874

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}

Probab=94.45  E-value=0.15  Score=53.46  Aligned_cols=92  Identities=16%  Similarity=0.048  Sum_probs=56.5

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR  163 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~  163 (472)
                      ..+|+||=+..-.   ...+...|++.|..++++..+..                .+++....+|+||+|||....... 
T Consensus         7 ~~~IlilD~Gs~~---~~~I~r~lre~Gv~~eiv~~~~~----------------~~~i~~~~~dgIIlsGGp~s~~~~-   66 (556)
T 3uow_A            7 YDKILVLNFGSQY---FHLIVKRLNNIKIFSETKDYGVE----------------LKDIKDMNIKGVILSGGPYSVTEA-   66 (556)
T ss_dssp             CCEEEEEESSCTT---HHHHHHHHHHTTCCEEEEETTCC----------------GGGTTTSCEEEEEECCCSCCTTST-
T ss_pred             CCEEEEEECCCcc---HHHHHHHHHHCCCeEEEEECCCC----------------HHHHhhcCCCEEEECCCCCccccc-
Confidence            4678777554322   23567888999998888764421                112222369999999995333221 


Q ss_pred             CChHHH-HHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          164 DCEILK-KITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       164 ~~~~~~-~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ..+.+. .+++.+.+++++|.+||-|-+ +|+.+
T Consensus        67 ~~~~~~~~l~~~a~~~g~PvLGIC~G~Q-lLa~~   99 (556)
T 3uow_A           67 GSPHLKKEVFEYFLEKKIPIFGICYGMQ-EIAVQ   99 (556)
T ss_dssp             TCCCCCHHHHHHHHHTTCCEEEETHHHH-HHHHH
T ss_pred             CCcchhHHHHHHhhhcCCCEEEECHHHH-HHHHH
Confidence            112222 334445667999999999766 66654

>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}

Probab=94.19  E-value=0.057  Score=51.40  Aligned_cols=98  Identities=11%  Similarity=0.115  Sum_probs=58.9

Q ss_pred             cEEEEEeCCC-CcHHHHHHHHHHHHhC----CCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc
Q 012037           85 KKVLVPVGFG-TEEMEAVIIVDVLRRA----GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS  159 (472)
Q Consensus        85 ~kV~ill~~g-~~~~e~~~~~~~l~~a----g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~  159 (472)
                      .||+|+.-.| .-...+..+.+.|..+    +.++.++..+.. .++...+..  .+   ...  ..+|.|++|||. +.
T Consensus         9 ~~Iaivg~y~~~~~dny~S~~~aL~~~g~~~~~~v~v~~~~~~-~~~~~~~~~--~~---~~~--~~~dgiil~GG~-~~   79 (273)
T 2w7t_A            9 VRIAFVGKYLQDAGDTYFSVLQCFEHCQIALQVRLDILYVDSE-ELEGPNADE--AR---KAL--LGCDGIFVPGGF-GN   79 (273)
T ss_dssp             EEEEEEECCHHHHTTTTHHHHHHHHHHHHHHTCCEEEEEEEGG-GGSSTTTHH--HH---HHH--HTCSEEEECCCC-TT
T ss_pred             CEEEEEeCCCcCCchHHHHHHHHHHHHHHhcCCceEEeccChh-hcccccchh--HH---HHH--hhCCEEEecCCC-CC
Confidence            6899885332 0112455666666544    566777776642 222111100  00   112  268999999994 33


Q ss_pred             ccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhc
Q 012037          160 VRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLP  195 (472)
Q Consensus       160 ~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~  195 (472)
                      .   ..+..+++++++.+.+++|.+||-|-+ +|+.
T Consensus        80 ~---~~~~~~~~i~~~~~~~~PilGIC~G~Q-ll~~  111 (273)
T 2w7t_A           80 R---GVDGKCAAAQVARMNNIPYFGVXLGMQ-VAVI  111 (273)
T ss_dssp             T---THHHHHHHHHHHHHHTCCEEEETHHHH-HHHH
T ss_pred             c---CchhHHHHHHHHHHCCCcEEEECcCHH-HHHH
Confidence            2   234577899999899999999999866 5554

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}

Probab=94.11  E-value=0.064  Score=56.03  Aligned_cols=88  Identities=15%  Similarity=0.019  Sum_probs=56.7

Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc
Q 012037          288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK  367 (472)
Q Consensus       288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~  367 (472)
                      .+|+|+=|..-..   ..+...|+++|..++++..+.                ..+++....+|.||+|||.....    
T Consensus        11 ~~I~IlD~g~~~~---~~i~r~lr~~Gv~~~i~p~~~----------------~~~~i~~~~~dgIILsGGp~sv~----   67 (527)
T 3tqi_A           11 HRILILDFGSQYA---QLIARRVREIGVYCELMPCDI----------------DEETIRDFNPHGIILSGGPETVT----   67 (527)
T ss_dssp             SEEEEEECSCTTH---HHHHHHHHHHTCEEEEEETTC----------------CSSSSTTTCCSEEEECCCCC-------
T ss_pred             CeEEEEECCCccH---HHHHHHHHHCCCeEEEEECCC----------------CHHHHHhcCCCEEEECCcCcccc----
Confidence            5899987754333   356778888998888774432                22333223569999999974321    


Q ss_pred             cHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      +.......+...+.+.+|.+||-|..+|+.+
T Consensus        68 ~~~~~~~~~~~~~~~~PvLGIC~G~Qlla~~   98 (527)
T 3tqi_A           68 LSHTLRAPAFIFEIGCPVLGICYGMQTMAYQ   98 (527)
T ss_dssp             ------CCCSTTTSSSCEEEETHHHHHHHHH
T ss_pred             cCCChhhHHHHHhcCCCEEEEChHHHHHHHH
Confidence            2222333455567899999999999999865

>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A

Probab=93.98  E-value=0.043  Score=52.69  Aligned_cols=102  Identities=10%  Similarity=0.018  Sum_probs=60.4

Q ss_pred             CcEEEEE-eCCCCcHHHHHHHHHHHHhCCC----EEEEEeeCCCcceeccCCceeeeCCC-cCCC--CCCcccEEEEcCC
Q 012037           84 PKKVLVP-VGFGTEEMEAVIIVDVLRRAGA----QVTMASVEPQLEVEASSGTRLVADTS-ISNC--SHQVFDLIALPGG  155 (472)
Q Consensus        84 ~~kV~il-l~~g~~~~e~~~~~~~l~~ag~----~v~~vs~~~g~~v~~~~G~~v~~d~~-~~~~--~~~~~D~vivpGG  155 (472)
                      ..||+|+ =+.+... .+..+.+.|+++|+    ++.++..+.. .+...   .+..+.. +++.  ....+|+||||||
T Consensus        25 ~~~Iavv~d~~~~~~-s~~si~~~L~~~G~~~~~~v~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~l~~~dgiil~GG   99 (289)
T 2v4u_A           25 ICSIALVGKYTKLRD-CYASVFKALEHSALAINHKLNLMYIDSI-DLEKI---TETEDPVKFHEAWQKLCKADGILVPGG   99 (289)
T ss_dssp             EEEEEEEESCSSCCG-GGHHHHHHHHHHHHHTTEEEEEEEEEGG-GGSHH---HHHHCHHHHHHHHHHHHHCSEEEECSC
T ss_pred             ceEEEEEecCcCCCc-cHHHHHHHHHHhhhhhCCceEEEEechh-hcccc---cccCChhhhhhHHHHHhhCCEEEecCC
Confidence            3588887 3423332 14577888887754    4555555432 11110   1111111 0000  0126899999999


Q ss_pred             ccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhc
Q 012037          156 MPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLP  195 (472)
Q Consensus       156 ~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~  195 (472)
                      .. ...   .....++++++.+.+++|.+||.|.+ +|+.
T Consensus       100 ~~-~~~---~~~~~~~i~~~~~~~~PilGIC~G~Q-~l~~  134 (289)
T 2v4u_A          100 FG-IRG---TLGKLQAISWARTKKIPFLGVXLGMQ-LAVI  134 (289)
T ss_dssp             CS-STT---HHHHHHHHHHHHHTTCCEEEETHHHH-HHHH
T ss_pred             CC-chh---HHHHHHHHHHHHHcCCcEEEECccHH-HHHH
Confidence            53 322   25788999999999999999999766 5665

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1

Probab=93.56  E-value=0.056  Score=52.60  Aligned_cols=97  Identities=16%  Similarity=0.135  Sum_probs=58.1

Q ss_pred             CcEEEEEeCCCCcH--------HHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCC
Q 012037           84 PKKVLVPVGFGTEE--------MEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGG  155 (472)
Q Consensus        84 ~~kV~ill~~g~~~--------~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG  155 (472)
                      ...|+|+...+...        .-.....+.|+++|+++.++..+.. .           + .+.+. ...+|.||+|||
T Consensus        30 ~P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~-~-----------~-~i~~~-l~~~dglil~GG   95 (315)
T 1l9x_A           30 KPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLT-E-----------K-DYEIL-FKSINGILFPGG   95 (315)
T ss_dssp             CCEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCC-H-----------H-HHHHH-HHHSSEEEECCC
T ss_pred             CCEEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEEEecCCC-H-----------H-HHHHH-HhcCCEEEEeCC
Confidence            45899987543211        0112467889999999888765421 0           0 01110 126899999999


Q ss_pred             cccccccc---CChHHHHHHHHHHhcC--CeEEEEchhhHHhhhc
Q 012037          156 MPGSVRLR---DCEILKKITSKQAEEK--RLYGAICAAPAVTLLP  195 (472)
Q Consensus       156 ~~~~~~l~---~~~~~~~~l~~~~~~~--k~I~aic~g~~~lLa~  195 (472)
                      ..+.....   ....+.+++++..+.+  ++|.+||-|-+ +|+.
T Consensus        96 ~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Q-ll~~  139 (315)
T 1l9x_A           96 SVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFE-ELSL  139 (315)
T ss_dssp             CCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHH-HHHH
T ss_pred             CcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHHH-HHHH
Confidence            42332110   0134667777776664  99999999866 5654

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*

Probab=93.15  E-value=0.33  Score=43.21  Aligned_cols=90  Identities=17%  Similarity=0.145  Sum_probs=51.7

Q ss_pred             EEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccc-cCCCcccEEEEcCCCcchhcccc
Q 012037          289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISD-AAESVYDLIILPGGVAGAERLQK  367 (472)
Q Consensus       289 ~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~-~~~~~~D~livpGG~~~~~~~~~  367 (472)
                      ||+|+=..+..   .....+.|++.|+++.++..+..            .+ .+.+ ....+.|.+|+.||.......  
T Consensus         2 ~i~iiDn~~s~---~~~i~~~l~~~G~~~~v~~~~~~------------~~-~i~~~l~~~~~~~iil~gGpg~~~~~--   63 (192)
T 1i1q_B            2 DILLLDNIDSF---TWNLADQLRTNGHNVVIYRNHIP------------AQ-TLIDRLATMKNPVLMLSPGPGVPSEA--   63 (192)
T ss_dssp             EEEEEECSCSS---HHHHHHHHHHTTCEEEEEETTSC------------SH-HHHHHHTTCSSEEEEECCCSSCGGGS--
T ss_pred             cEEEEECCccH---HHHHHHHHHHCCCeEEEEECCCC------------HH-HHHHHhhhccCCeEEECCCCcCchhC--
Confidence            67777633332   23557788888998887654421            00 1111 111123447777776433321  


Q ss_pred             cHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                       ....++++ ..+++++|.+||-|..+|+.+
T Consensus        64 -~~~~~l~~-~~~~~~PilGIC~G~Qll~~~   92 (192)
T 1i1q_B           64 -GCMPELLT-RLRGKLPIIGICLGHQAIVEA   92 (192)
T ss_dssp             -TTHHHHHH-HHBTTBCEEEETHHHHHHHHH
T ss_pred             -chHHHHHH-HHhcCCCEEEECcChHHHHHH
Confidence             22233444 356789999999999999975

>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*

Probab=93.10  E-value=0.65  Score=49.51  Aligned_cols=90  Identities=13%  Similarity=0.144  Sum_probs=60.9

Q ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037           83 PPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL  162 (472)
Q Consensus        83 ~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l  162 (472)
                      ..++|+|+=+.+-   =...+.+.|++.|++++++..+.  +               .+  ...+|.|||+||.......
T Consensus       445 ~Gk~IlviD~gds---f~~~l~~~l~~~G~~v~Vv~~d~--~---------------~~--~~~~DgIIlsGGPg~p~d~  502 (645)
T 3r75_A          445 SGCRALIVDAEDH---FTAMIAQQLSSLGLATEVCGVHD--A---------------VD--LARYDVVVMGPGPGDPSDA  502 (645)
T ss_dssp             TTCEEEEEESSCT---HHHHHHHHHHHTTCEEEEEETTC--C---------------CC--GGGCSEEEECCCSSCTTCT
T ss_pred             CCCEEEEEECCcc---HHHHHHHHHHHCCCEEEEEECCC--c---------------cc--ccCCCEEEECCCCCChhhh
Confidence            4578777643321   13457888899999998886552  1               01  1268999999985433322


Q ss_pred             cCC---hHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          163 RDC---EILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       163 ~~~---~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                       .+   ..+.++|++..+.+++|.+||-|-+ +|+.+
T Consensus       503 -~~p~i~~~~~lI~~a~~~~iPiLGIClG~Q-lLa~a  537 (645)
T 3r75_A          503 -GDPRIARLYAWLRHLIDEGKPFMAVCLSHQ-ILNAI  537 (645)
T ss_dssp             -TSHHHHHHHHHHHHHHHHTCCEEEETHHHH-HHHHH
T ss_pred             -hhhhHHHHHHHHHHHHHCCCCEEEECHHHH-HHHHH
Confidence             22   2467889998999999999999866 56654

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=92.03  E-value=0.49  Score=48.74  Aligned_cols=97  Identities=12%  Similarity=0.062  Sum_probs=59.1

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhC----CCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRA----GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS  159 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~a----g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~  159 (472)
                      ..+||++=----....+..+.++|..+    +.++++...+.. .++.. +  ..   ..+..  ..+|+|++|||.+. 
T Consensus       293 ~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~V~I~wIds~-~l~~~-~--~~---~~~~L--~~~DgIIlpGG~G~-  362 (535)
T 3nva_A          293 TINIALVGKYTKLKDSYISIKEAIYHASAYIGVRPKLIWIEST-DLESD-T--KN---LNEIL--GNVNGIIVLPGFGS-  362 (535)
T ss_dssp             EEEEEEEESCTTSGGGGHHHHHHHHHHHHHTTCEEEEEEEEGG-GGCCS-S--SC---CTTTT--TSCSEEEECCCCSS-
T ss_pred             eeEEEEEecCcCCchhHHHHHHHHHHHHHHcCCCeEEEEecch-hcccc-c--cc---hhhhc--cCCCEEEECCCCCC-
Confidence            356766532111234556677777755    456666655532 22211 1  00   01223  37999999999532 


Q ss_pred             ccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhh
Q 012037          160 VRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLL  194 (472)
Q Consensus       160 ~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa  194 (472)
                      .   .....+++++.+.++++++.+||-|-+ +|+
T Consensus       363 ~---~~~g~i~~ir~a~~~~~PiLGIClG~Q-ll~  393 (535)
T 3nva_A          363 R---GAEGKIKAIKYAREHNIPFLGICFGFQ-LSI  393 (535)
T ss_dssp             T---THHHHHHHHHHHHHHTCCEEEETHHHH-HHH
T ss_pred             c---cHHHHHHHHHHHHHcCCcEEEECcchh-HHH
Confidence            2   335678899999999999999999765 444

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1

Probab=91.87  E-value=0.17  Score=52.70  Aligned_cols=88  Identities=17%  Similarity=0.052  Sum_probs=57.2

Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc
Q 012037          288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK  367 (472)
Q Consensus       288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~  367 (472)
                      ++|+|+=|.+-..   ..+...|+.+|..++++..+.                ..+++....+|.||++||....... .
T Consensus         8 ~~IlIlD~g~~~~---~~i~r~lr~~G~~~~i~p~~~----------------~~~~i~~~~~dgiILsGGp~s~~~~-~   67 (525)
T 1gpm_A            8 HRILILDFGSQYT---QLVARRVRELGVYCELWAWDV----------------TEAQIRDFNPSGIILSGGPESTTEE-N   67 (525)
T ss_dssp             SEEEEEECSCTTH---HHHHHHHHHTTCEEEEEESCC----------------CHHHHHHHCCSEEEECCCSSCTTST-T
T ss_pred             CEEEEEECCCccH---HHHHHHHHHCCCEEEEEECCC----------------CHHHHhccCCCEEEECCcCcccccc-C
Confidence            6799987765443   457788999998888775432                1233311246999999997432211 1


Q ss_pred             cHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      .+.+   .+...+.+++|.+||-|..+|+.+
T Consensus        68 ~~~~---~~~~~~~g~PvLGIC~G~Qlla~~   95 (525)
T 1gpm_A           68 SPRA---PQYVFEAGVPVFGVCYGMQTMAMQ   95 (525)
T ss_dssp             CCCC---CGGGGTSSSCEEEETHHHHHHHHH
T ss_pred             Ccch---HHHHHHCCCCEEEEChHHHHHHHH
Confidence            1111   133456799999999999999864

>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}

Probab=91.67  E-value=0.2  Score=46.93  Aligned_cols=78  Identities=13%  Similarity=0.101  Sum_probs=51.9

Q ss_pred             HHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc--cc-------------ccCCh
Q 012037          102 IIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS--VR-------------LRDCE  166 (472)
Q Consensus       102 ~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~--~~-------------l~~~~  166 (472)
                      ..++.++++|..+.++..... .             .+.+. ...+|.|+++||. +.  ..             ...|.
T Consensus        32 ~~~~~l~~aG~~pv~lp~~~~-~-------------~~~~~-l~~~DGlil~GG~-~v~P~~yg~~~~~~~~~~~~~rd~   95 (254)
T 3fij_A           32 RYVDAIQKVGGFPIALPIDDP-S-------------TAVQA-ISLVDGLLLTGGQ-DITPQLYLEEPSQEIGAYFPPRDS   95 (254)
T ss_dssp             HHHHHHHHHTCEEEEECCCCG-G-------------GHHHH-HHTCSEEEECCCS-CCCGGGGTCCCCTTCCCCCHHHHH
T ss_pred             HHHHHHHHCCCEEEEEeCCCc-h-------------HHHHH-HhhCCEEEECCCC-CCChhhcCCccCcccCCcChhhhH
Confidence            467788888988887765421 0             01111 1259999999993 21  10             01123


Q ss_pred             HHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          167 ILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       167 ~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ..+++|+++.+++++|.+||-|-+ +|+.+
T Consensus        96 ~~~~lir~a~~~~~PiLGIC~G~Q-ll~~a  124 (254)
T 3fij_A           96 YEIALVRAALDAGKPIFAICRGMQ-LVNVA  124 (254)
T ss_dssp             HHHHHHHHHHHTTCCEEEETHHHH-HHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEECHHHH-HHHHH
Confidence            477999999999999999999755 67765

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}

Probab=91.39  E-value=0.33  Score=50.61  Aligned_cols=89  Identities=13%  Similarity=0.009  Sum_probs=53.7

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR  163 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~  163 (472)
                      ..||+||=+.+-..   ..+...+++.|..++++..+..                .++.....+|+||+|||.....   
T Consensus        10 ~~~I~IlD~g~~~~---~~i~r~lr~~Gv~~~i~p~~~~----------------~~~i~~~~~dgIILsGGp~sv~---   67 (527)
T 3tqi_A           10 QHRILILDFGSQYA---QLIARRVREIGVYCELMPCDID----------------EETIRDFNPHGIILSGGPETVT---   67 (527)
T ss_dssp             CSEEEEEECSCTTH---HHHHHHHHHHTCEEEEEETTCC----------------SSSSTTTCCSEEEECCCCC------
T ss_pred             CCeEEEEECCCccH---HHHHHHHHHCCCeEEEEECCCC----------------HHHHHhcCCCEEEECCcCcccc---
Confidence            46888886543222   3567888999998888754321                1122222579999999943221   


Q ss_pred             CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                       +.......++.++.+++|.+||-|-+ +|+.+
T Consensus        68 -~~~~~~~~~~~~~~~~PvLGIC~G~Q-lla~~   98 (527)
T 3tqi_A           68 -LSHTLRAPAFIFEIGCPVLGICYGMQ-TMAYQ   98 (527)
T ss_dssp             -------CCCSTTTSSSCEEEETHHHH-HHHHH
T ss_pred             -cCCChhhHHHHHhcCCCEEEEChHHH-HHHHH
Confidence             22233344566788999999999766 56643

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=90.04  E-value=0.39  Score=50.04  Aligned_cols=224  Identities=12%  Similarity=0.017  Sum_probs=113.4

Q ss_pred             cccEEEEcCCccccccccCChHHHHHHHHHH-hcCC--eEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC-Cc---
Q 012037          146 VFDLIALPGGMPGSVRLRDCEILKKITSKQA-EEKR--LYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-FW---  218 (472)
Q Consensus       146 ~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~-~~~k--~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~-~~---  218 (472)
                      +||++|+=|| +.+.+ ..+-.+.+.++++. +.|+  .+.--.+ -.-.+..+|-++-|. |=|.  .++|+. ..   
T Consensus       133 ~~d~~i~e~~-gt~~d-i~~~~~~~~~~q~~~~~~~~~~~~~h~~-~~p~~~~~ge~ktkp-tq~s--v~~l~s~gi~pd  206 (545)
T 1s1m_A          133 GHDVVLVEIG-GTVGD-IESLPFLEAIRQMAVEIGREHTLFMHLT-LVPYMAASGEVKTKP-TQHS--VKELLSIGIQPD  206 (545)
T ss_dssp             TCSEEEEEEC-SCTTS-STTHHHHHHHHHHHHHHCTTSEEEEEEE-ECCEETTTTEECCHH-HHHH--HHHHHTTTCCCS
T ss_pred             cCCEEEEECC-CChhh-hhChHHHHHHHHHhHhhCcCcEEEEEEe-CcccccCCCCcCCCC-CcCC--HHHHhCCCCccC
Confidence            6999999776 33433 35566777777654 3332  2222222 233466777665432 3332  122222 10   


Q ss_pred             -------------ccc----CcEEEeCCEEeCCCCCChHHHHHHHHHHHhCchhHHhhhhcccccc-CCcc-hhhhcccc
Q 012037          219 -------------AVK----SNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHN-ADNS-LKKEEFNE  279 (472)
Q Consensus       219 -------------~~~----~~~v~Dg~iiTa~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~~-~~~~-~~~~~~n~  279 (472)
                                   |..    .-++...+++...+..+-.++-+.|=+    +...+.+.+.+.++. ..+. .+.+-.+.
T Consensus       207 ~lv~R~~~~~~~~~r~kisL~~~v~~~~Vi~~~dvdt~y~lp~~lr~----~G~~~~ii~~~~l~~~~~~l~~w~~lv~~  282 (545)
T 1s1m_A          207 ILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKS----QGLDDYICKRFSLNCPEANLSEWEQVIFE  282 (545)
T ss_dssp             EEEEEESSCCCHHHHHHHHHTTCCCSSCEEEEECCSCGGGHHHHHHH----TTHHHHHHHHTTCCCCCCCCHHHHHHHHH
T ss_pred             EEEEeCCCCCCchhhccCChhhCccccCceecCCCChHHHHHHHHHH----cCChhhhhhhCCCCchhHHHHHHHHHHHh
Confidence                         111    125566789998888766555554433    233333333343331 1111 12111111


Q ss_pred             cccccCCCCEEEEEeCCCCCHH-HHHHHHHHHHhCCC----eEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEE
Q 012037          280 VEWFFDRMPRVLIPIANGSEEI-EIVTIVDILRRAKV----DVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLII  354 (472)
Q Consensus       280 ~~~~~~~~~~V~il~~~g~~~~-e~~~~~d~l~~a~~----~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~li  354 (472)
                      +. ......+|++.-- ..... -...+.+.|..+++    ++.+.-.+.. .+..        +  +.+ ...++|.||
T Consensus       283 v~-~~~~~v~i~~vGk-yv~l~D~y~Si~~aL~~~G~~~~~~V~i~~~d~e-~i~~--------~--~~~-~l~~~DGIi  348 (545)
T 1s1m_A          283 EA-NPVSEVTIGMVGK-YIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQ-DVET--------R--GVE-ILKGLDAIL  348 (545)
T ss_dssp             HH-CCSEEEEEEEEES-SCSSGGGGHHHHHHHHHHHHHHTEEEEEEEEEHH-HHHH--------H--CTT-TTTTCSEEE
T ss_pred             cc-CCCCeEEeCCcCC-eEEEEEHHHHHHHHHHHhCcccCCeEEEccCCHH-Hhhh--------h--hhh-hhhcCCEEE
Confidence            11 1112234554321 11111 23445666776664    3444433221 1110        0  111 125789999


Q ss_pred             EcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHH
Q 012037          355 LPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK  397 (472)
Q Consensus       355 vpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~  397 (472)
                      +|||++..    ..+..+++++.+.++++++.+||-|-.+|+.
T Consensus       349 lsGGpg~~----~~~g~~~~i~~a~~~~~PiLGIClG~Qll~v  387 (545)
T 1s1m_A          349 VPGGFGYR----GVEGMITTARFARENNIPYLGICLGMQVALI  387 (545)
T ss_dssp             ECCCCSST----THHHHHHHHHHHHHTTCCEEEETHHHHHHHH
T ss_pred             ECCCCCCc----cchhhHHHHHHHHHCCCcEEEECChHHHHHH
Confidence            99997432    2356778999988899999999999999884

>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}

Probab=89.45  E-value=0.54  Score=44.98  Aligned_cols=99  Identities=13%  Similarity=0.040  Sum_probs=64.2

Q ss_pred             CEEEEEeCCCCCHHH-HHHHHHHHHhCCC-eEEEEEecCCcceecCCCcEEeecC-CccccCCCcccEEEEcCCCcc-hh
Q 012037          288 PRVLIPIANGSEEIE-IVTIVDILRRAKV-DVVVASVERSTQIVASQGVKIIADK-SISDAAESVYDLIILPGGVAG-AE  363 (472)
Q Consensus       288 ~~V~il~~~g~~~~e-~~~~~d~l~~a~~-~v~~vs~~~~~~v~s~~G~~v~~d~-~l~~~~~~~~D~livpGG~~~-~~  363 (472)
                      .||+++-+-.-..-+ .....+.|++.|+ +++++..... . .       ..+. ..+.+  .+.|+|+|.||..- -.
T Consensus        57 ~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r-~-~-------a~~~~~~~~l--~~ad~I~v~GGnt~~l~  125 (291)
T 3en0_A           57 AIIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDR-A-Q-------GDDSGYRLFV--EQCTGIFMTGGDQLRLC  125 (291)
T ss_dssp             CEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSG-G-G-------GGCHHHHHHH--HHCSEEEECCSCHHHHH
T ss_pred             CeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCc-c-c-------cCCHHHHHHH--hcCCEEEECCCCHHHHH
Confidence            578888665443322 3345778888888 6776655331 0 0       0011 12223  56899999999621 11


Q ss_pred             cccccHHHHHHHHHHHHcC-CeEEEEchhHHHHHH
Q 012037          364 RLQKSRILKKLLKEQKVAG-RIYGAVCSSPIVLHK  397 (472)
Q Consensus       364 ~~~~~~~l~~~L~~~~~~g-~~v~aic~G~~lLA~  397 (472)
                      .......+.+.|++.+++| .++++.|+|+.++..
T Consensus       126 ~~l~~t~l~~~L~~~~~~G~~~~~GtSAGA~i~~~  160 (291)
T 3en0_A          126 GLLADTPLMDRIRQRVHNGEISLAGTSAGAAVMGH  160 (291)
T ss_dssp             HHHTTCHHHHHHHHHHHTTSSEEEEETHHHHTTSS
T ss_pred             HHHHhCCHHHHHHHHHHCCCeEEEEeCHHHHhhhH
Confidence            2345668899999999999 899999999998753

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=89.37  E-value=0.38  Score=50.15  Aligned_cols=226  Identities=14%  Similarity=0.048  Sum_probs=110.0

Q ss_pred             cccEEEEcCCccccccccCChHHHHHHHHHH-hcCC-eEEEE-chhhHHhhhcCCCCCCceeecCcchhccCCC-Ccccc
Q 012037          146 VFDLIALPGGMPGSVRLRDCEILKKITSKQA-EEKR-LYGAI-CAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-FWAVK  221 (472)
Q Consensus       146 ~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~-~~~k-~I~ai-c~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~-~~~~~  221 (472)
                      +||++|+=|| +.+-+ ..+-.+.+.+|++. +.|+ -++-| .+ -.-.|..+|-++.|. |=|.  ..+|+. ..+.+
T Consensus       144 ~~d~~i~e~~-gt~~d-i~~~~~~~~~rq~~~~~~~~~~~~~h~~-~~p~~~~~~e~ktkp-tq~s--v~~lrs~gi~pd  217 (550)
T 1vco_A          144 KAEIVVVEVG-GTVGD-IESLPFLEAIRQFRFDEGEGNTLYLHLT-LVPYLETSEEFKTKP-TQHS--VATLRGVGIQPD  217 (550)
T ss_dssp             TCSEEEEEEC-SCTTS-STTHHHHHHHHTHHHHHCTTSEEEEEEE-ECCEETTTTEECCHH-HHHH--HHHHHHTTCCCS
T ss_pred             CCCEEEEECC-CChhH-hhhHHHHHHHHHHhHhhCcCCEEEEEEe-CeecccCCCCcCCCC-cchh--HHHHhcCCCccC
Confidence            6899999765 33332 35667777777664 3232 22222 22 233466777776543 3332  112222 11111


Q ss_pred             C--------------------cEEEeCCEEeCCCCCChHHHHHHHHHHHhCchhHHhhhhcccccc-CCcch-hhhcccc
Q 012037          222 S--------------------NIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHN-ADNSL-KKEEFNE  279 (472)
Q Consensus       222 ~--------------------~~v~Dg~iiTa~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~~-~~~~~-~~~~~n~  279 (472)
                      -                    -++...+++...+..+-.++.+.|=++    ...+.+.+.+.++. ..+.. |. .+..
T Consensus       218 ~lvvR~~~~~~~~~r~k~sL~~~v~~~~Vi~~~dvdt~y~lp~~lr~~----G~~~~v~~~~~l~~~~~~l~~w~-~~~~  292 (550)
T 1vco_A          218 ILVLRSARPVPEEVRRKVALFTNVRPGHVFSSPTVEHLYEVPLLLEEQ----GLGRAVERALGLEAVIPNLSFWQ-EAVR  292 (550)
T ss_dssp             EEEEEESSCCCHHHHHHHHHHHTCCGGGEEEEECCSCTTHHHHHHHHH----THHHHHHHHTTCCCCCCCCHHHH-HHHH
T ss_pred             EEEEeCCCCCCcchhcccchhcCCCccCeeecCCCChHHHHHHHHHHc----CChhhhHhhCCCCchhHHHHHhH-HHHH
Confidence            1                    134456788888877666565554332    22333333333321 11111 11 1111


Q ss_pred             cccccCCCCEEEEEe-----CCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEE
Q 012037          280 VEWFFDRMPRVLIPI-----ANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLII  354 (472)
Q Consensus       280 ~~~~~~~~~~V~il~-----~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~li  354 (472)
                      .........+|+++-     .|.+ ..=.-.+...+...|.++.+.-.+.. .+.        ++ .+++. ..++|.||
T Consensus       293 ~~~~~~~~v~I~ivgkyv~l~D~y-~Sv~~aL~~~g~~~g~~v~I~~~d~~-~~~--------~~-~~~~~-L~~~DGII  360 (550)
T 1vco_A          293 VLKHPERTVKIAIAGKYVKMPDAY-LSLLEALRHAGIKNRARVEVKWVDAE-SLE--------AA-DLEEA-FRDVSGIL  360 (550)
T ss_dssp             HHHSCSEEEEEEEEESCC---CTT-HHHHHHHHHHHHHTTEEEEEEEEEGG-GC----------C-CHHHH-TTTCSCEE
T ss_pred             hhcCCCCceEEcccCCeEEEEecH-HHHHHHHHHHHHHcCCeEEEEEeCcc-ccc--------cc-hHHHH-HhcCCEEE
Confidence            100111223455331     2222 11111222333334556766533321 111        11 12121 15789999


Q ss_pred             EcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          355 LPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       355 vpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      +|||.+..    ..+..+++++.+.++++++.+||-|-.+|+.+
T Consensus       361 LpGGfGd~----~~~g~i~~ir~a~e~~iPiLGICLGmQlL~~a  400 (550)
T 1vco_A          361 VPGGFGVR----GIEGKVRAAQYARERKIPYLGICLGLQIAVIE  400 (550)
T ss_dssp             ECCCCSST----THHHHHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred             ECCCCCCc----chhhhHHHHHHHHHCCCcEEEECcCHHHHHHH
Confidence            99997432    23456788998888999999999999988754

>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}

Probab=89.20  E-value=0.33  Score=46.45  Aligned_cols=101  Identities=10%  Similarity=0.035  Sum_probs=63.9

Q ss_pred             CcEEEEEeCCCCcHHH-HHHHHHHHHhCCC-EEEEEeeCCCcceeccCCceeeeCC-CcCCCCCCcccEEEEcCCcc-cc
Q 012037           84 PKKVLVPVGFGTEEME-AVIIVDVLRRAGA-QVTMASVEPQLEVEASSGTRLVADT-SISNCSHQVFDLIALPGGMP-GS  159 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e-~~~~~~~l~~ag~-~v~~vs~~~g~~v~~~~G~~v~~d~-~~~~~~~~~~D~vivpGG~~-~~  159 (472)
                      ..||+|+-+-.-+..+ .....++|++.|+ .++++..... . ..       .+. ..+.+  .+.|+|+|+||.. ..
T Consensus        56 ~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r-~-~a-------~~~~~~~~l--~~ad~I~v~GGnt~~l  124 (291)
T 3en0_A           56 DAIIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDR-A-QG-------DDSGYRLFV--EQCTGIFMTGGDQLRL  124 (291)
T ss_dssp             GCEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSG-G-GG-------GCHHHHHHH--HHCSEEEECCSCHHHH
T ss_pred             CCeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCc-c-cc-------CCHHHHHHH--hcCCEEEECCCCHHHH
Confidence            3689998765444433 3456788888898 6776655321 0 00       000 01112  2589999999942 11


Q ss_pred             ccccCChHHHHHHHHHHhcC-CeEEEEchhhHHhhhcC
Q 012037          160 VRLRDCEILKKITSKQAEEK-RLYGAICAAPAVTLLPW  196 (472)
Q Consensus       160 ~~l~~~~~~~~~l~~~~~~~-k~I~aic~g~~~lLa~a  196 (472)
                      .....+..+.+.|++.+++| .++++.|+| +.++...
T Consensus       125 ~~~l~~t~l~~~L~~~~~~G~~~~~GtSAG-A~i~~~~  161 (291)
T 3en0_A          125 CGLLADTPLMDRIRQRVHNGEISLAGTSAG-AAVMGHH  161 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHHTTSSEEEEETHH-HHTTSSE
T ss_pred             HHHHHhCCHHHHHHHHHHCCCeEEEEeCHH-HHhhhHh
Confidence            22445678899999999999 899999996 5456543

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1

Probab=88.47  E-value=0.3  Score=50.95  Aligned_cols=88  Identities=14%  Similarity=0.079  Sum_probs=54.1

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR  163 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~  163 (472)
                      .++|+|+=+.+-..   ..+...|+++|..++++..+.. .            ..+.+.   .+|+||+|||....... 
T Consensus         7 ~~~IlIlD~g~~~~---~~i~r~lr~~G~~~~i~p~~~~-~------------~~i~~~---~~dgiILsGGp~s~~~~-   66 (525)
T 1gpm_A            7 KHRILILDFGSQYT---QLVARRVRELGVYCELWAWDVT-E------------AQIRDF---NPSGIILSGGPESTTEE-   66 (525)
T ss_dssp             SSEEEEEECSCTTH---HHHHHHHHHTTCEEEEEESCCC-H------------HHHHHH---CCSEEEECCCSSCTTST-
T ss_pred             CCEEEEEECCCccH---HHHHHHHHHCCCEEEEEECCCC-H------------HHHhcc---CCCEEEECCcCcccccc-
Confidence            46899886554322   4567889999999888764421 0            011111   36999999995333211 


Q ss_pred             CChHHHHHHHHHHhcCCeEEEEchhhHHhhhc
Q 012037          164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLP  195 (472)
Q Consensus       164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~  195 (472)
                      ..+.+   .++.++.+++|.+||-|.+ +|+.
T Consensus        67 ~~~~~---~~~~~~~g~PvLGIC~G~Q-lla~   94 (525)
T 1gpm_A           67 NSPRA---PQYVFEAGVPVFGVCYGMQ-TMAM   94 (525)
T ss_dssp             TCCCC---CGGGGTSSSCEEEETHHHH-HHHH
T ss_pred             CCcch---HHHHHHCCCCEEEEChHHH-HHHH
Confidence            11111   2445678999999999766 5665

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*

Probab=86.96  E-value=1.4  Score=39.12  Aligned_cols=91  Identities=13%  Similarity=0.182  Sum_probs=50.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCC
Q 012037           86 KVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDC  165 (472)
Q Consensus        86 kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~  165 (472)
                      ||+|+=..+.  . ...+.+.|++.|+++.++..+.  +..     .+.  ..+...   ++|.+++.||......   .
T Consensus         2 ~i~iiDn~~s--~-~~~i~~~l~~~G~~~~v~~~~~--~~~-----~i~--~~l~~~---~~~~iil~gGpg~~~~---~   63 (192)
T 1i1q_B            2 DILLLDNIDS--F-TWNLADQLRTNGHNVVIYRNHI--PAQ-----TLI--DRLATM---KNPVLMLSPGPGVPSE---A   63 (192)
T ss_dssp             EEEEEECSCS--S-HHHHHHHHHHTTCEEEEEETTS--CSH-----HHH--HHHTTC---SSEEEEECCCSSCGGG---S
T ss_pred             cEEEEECCcc--H-HHHHHHHHHHCCCeEEEEECCC--CHH-----HHH--HHhhhc---cCCeEEECCCCcCchh---C
Confidence            5666653222  1 2455888899999988876542  100     000  011111   2344666666333322   2


Q ss_pred             hHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          166 EILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       166 ~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ....++++ ..+.+++|.+||-|-+ +|+.+
T Consensus        64 ~~~~~l~~-~~~~~~PilGIC~G~Q-ll~~~   92 (192)
T 1i1q_B           64 GCMPELLT-RLRGKLPIIGICLGHQ-AIVEA   92 (192)
T ss_dssp             TTHHHHHH-HHBTTBCEEEETHHHH-HHHHH
T ss_pred             chHHHHHH-HHhcCCCEEEECcChH-HHHHH
Confidence            23334444 4678999999999766 67765

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}

Probab=86.18  E-value=0.36  Score=52.01  Aligned_cols=88  Identities=17%  Similarity=0.137  Sum_probs=54.2

Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc
Q 012037          288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK  367 (472)
Q Consensus       288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~  367 (472)
                      .+|+|+=+.+-...   .+...|+..|..+.++..+.                ..+++...++|.||++||...... ..
T Consensus        30 ~~I~VLDfg~q~~~---liar~lre~Gv~~~ivp~~~----------------~~e~i~~~~~dGIILsGGp~s~~~-~~   89 (697)
T 2vxo_A           30 GAVVILDAGAQYGK---VIDRRVRELFVQSEIFPLET----------------PAFAIKEQGFRAIIISGGPNSVYA-ED   89 (697)
T ss_dssp             CCEEEEEEC--CHH---HHHHHHHHTTCCEEEEETTC----------------CHHHHHHHTCSEEEEEECC--------
T ss_pred             CEEEEEECCCchHH---HHHHHHHHCCCEEEEEECCC----------------CHHHHhhcCCCEEEECCCCCcccC-cc
Confidence            57999877653332   25588899998888775442                223332246899999999743211 01


Q ss_pred             cHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      .+.   +.+...+.+++|.+||-|..+|+.+
T Consensus        90 ~~~---~~~~i~~~g~PvLGIC~G~QlLa~~  117 (697)
T 2vxo_A           90 APW---FDPAIFTIGKPVLGICYGMQMMNKV  117 (697)
T ss_dssp             CCC---CCGGGTTSSCCEEEEEHHHHHHHHH
T ss_pred             chh---HHHHHHhCCCCEEEECHHHHHHHHH
Confidence            111   1123346789999999999999975

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*

Probab=85.98  E-value=0.89  Score=47.03  Aligned_cols=86  Identities=14%  Similarity=0.094  Sum_probs=53.7

Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccH
Q 012037          290 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSR  369 (472)
Q Consensus       290 V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~  369 (472)
                      |+|+=|.+-..   ..+...++++|..+.++..+.                ..+++....+|.||++||....... ..+
T Consensus         2 i~ilD~g~~~~---~~i~r~l~~~G~~~~i~p~~~----------------~~~~i~~~~~dgiIlsGGp~s~~~~-~~~   61 (503)
T 2ywb_A            2 VLVLDFGSQYT---RLIARRLRELRAFSLILPGDA----------------PLEEVLKHRPQALILSGGPRSVFDP-DAP   61 (503)
T ss_dssp             EEEEESSCTTH---HHHHHHHHTTTCCEEEEETTC----------------CHHHHHTTCCSEEEECCCSSCSSCT-TCC
T ss_pred             EEEEECCCcHH---HHHHHHHHHCCCEEEEEECCC----------------CHHHHHhcCCCEEEECCCCchhccC-CCc
Confidence            56665544333   567888999998887764432                1233321246999999997432210 111


Q ss_pred             HHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          370 ILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       370 ~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      .+   .+...+.+.+|.+||-|..+|+.+
T Consensus        62 ~~---~~~~~~~~~PvLGIC~G~Qlla~~   87 (503)
T 2ywb_A           62 RP---DPRLFSSGLPLLGICYGMQLLAQE   87 (503)
T ss_dssp             CC---CGGGGCSSCCEEEETHHHHHHHHT
T ss_pred             ch---HHHHHhCCCCEEEECHHHHHHHHH
Confidence            11   133446799999999999999975

>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}

Probab=85.21  E-value=1.6  Score=40.99  Aligned_cols=86  Identities=10%  Similarity=-0.113  Sum_probs=55.5

Q ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037           82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR  161 (472)
Q Consensus        82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~  161 (472)
                      ..|+||+|+ .+.........+.+.|+..||+|+++..+.- +.            +.++.  .+||+||++.-.  ...
T Consensus         2 ~~m~~vLiV-~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~-~~------------~~~~L--~~yDvIIl~d~~--~~~   63 (259)
T 3rht_A            2 NAMTRVLYC-GDTSLETAAGYLAGLMTSWQWEFDYIPSHVG-LD------------VGELL--AKQDLVILSDYP--AER   63 (259)
T ss_dssp             ----CEEEE-ESSCTTTTHHHHHHHHHHTTCCCEEECTTSC-BC------------SSHHH--HTCSEEEEESCC--GGG
T ss_pred             CCCceEEEE-CCCCchhHHHHHHHHHHhCCceEEEeccccc-cc------------ChhHH--hcCCEEEEcCCc--ccc
Confidence            357888888 2223345667788899999999999887742 10            11223  379999997431  111


Q ss_pred             ccCChHHHHHHHHHHhcCCeEEEEch
Q 012037          162 LRDCEILKKITSKQAEEKRLYGAICA  187 (472)
Q Consensus       162 l~~~~~~~~~l~~~~~~~k~I~aic~  187 (472)
                        -++...+.|+++.++|.-++.+..
T Consensus        64 --l~~~~~~~L~~yV~~GGgLi~~gG   87 (259)
T 3rht_A           64 --MTAQAIDQLVTMVKAGCGLVMLGG   87 (259)
T ss_dssp             --BCHHHHHHHHHHHHTTCEEEEECS
T ss_pred             --CCHHHHHHHHHHHHhCCeEEEecC
Confidence              246777788888888888887765

>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}

Probab=85.18  E-value=1.7  Score=40.74  Aligned_cols=85  Identities=19%  Similarity=0.024  Sum_probs=56.3

Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037          286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  365 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~  365 (472)
                      .|+||+|+- ......+...+.+.|+..||+|+++..+.- +            .+.+++  .+||+||++--.  ... 
T Consensus         3 ~m~~vLiV~-g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~-~------------~~~~~L--~~yDvIIl~d~~--~~~-   63 (259)
T 3rht_A            3 AMTRVLYCG-DTSLETAAGYLAGLMTSWQWEFDYIPSHVG-L------------DVGELL--AKQDLVILSDYP--AER-   63 (259)
T ss_dssp             ---CEEEEE-SSCTTTTHHHHHHHHHHTTCCCEEECTTSC-B------------CSSHHH--HTCSEEEEESCC--GGG-
T ss_pred             CCceEEEEC-CCCchhHHHHHHHHHHhCCceEEEeccccc-c------------cChhHH--hcCCEEEEcCCc--ccc-
Confidence            467898883 223345666788899999999998877642 0            023444  789999998422  222 


Q ss_pred             cccHHHHHHHHHHHHcCCeEEEEch
Q 012037          366 QKSRILKKLLKEQKVAGRIYGAVCS  390 (472)
Q Consensus       366 ~~~~~l~~~L~~~~~~g~~v~aic~  390 (472)
                       -++.-++.|+++.++|.-++.+..
T Consensus        64 -l~~~~~~~L~~yV~~GGgLi~~gG   87 (259)
T 3rht_A           64 -MTAQAIDQLVTMVKAGCGLVMLGG   87 (259)
T ss_dssp             -BCHHHHHHHHHHHHTTCEEEEECS
T ss_pred             -CCHHHHHHHHHHHHhCCeEEEecC
Confidence             356778888888888887777743

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=84.36  E-value=0.91  Score=47.25  Aligned_cols=45  Identities=24%  Similarity=0.268  Sum_probs=35.4

Q ss_pred             cccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhc
Q 012037          146 VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLP  195 (472)
Q Consensus       146 ~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~  195 (472)
                      .+|.|++|||.+..    ......++++++.++++++.+||-|-+ +|+.
T Consensus       343 ~~DGIilsGGpg~~----~~~g~~~~i~~a~~~~~PiLGIClG~Q-ll~v  387 (545)
T 1s1m_A          343 GLDAILVPGGFGYR----GVEGMITTARFARENNIPYLGICLGMQ-VALI  387 (545)
T ss_dssp             TCSEEEECCCCSST----THHHHHHHHHHHHHTTCCEEEETHHHH-HHHH
T ss_pred             cCCEEEECCCCCCc----cchhhHHHHHHHHHCCCcEEEECChHH-HHHH
Confidence            69999999995332    225677899999889999999999766 5654

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=82.12  E-value=0.92  Score=47.25  Aligned_cols=45  Identities=22%  Similarity=0.190  Sum_probs=34.7

Q ss_pred             cccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhc
Q 012037          146 VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLP  195 (472)
Q Consensus       146 ~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~  195 (472)
                      .+|.|++|||.+..    ..+..++.++++.++++|+.+||-|-+ +|+.
T Consensus       355 ~~DGIILpGGfGd~----~~~g~i~~ir~a~e~~iPiLGICLGmQ-lL~~  399 (550)
T 1vco_A          355 DVSGILVPGGFGVR----GIEGKVRAAQYARERKIPYLGICLGLQ-IAVI  399 (550)
T ss_dssp             TCSCEEECCCCSST----THHHHHHHHHHHHHTTCCEEEETHHHH-HHHH
T ss_pred             cCCEEEECCCCCCc----chhhhHHHHHHHHHCCCcEEEECcCHH-HHHH
Confidence            68999999995332    224567888988889999999999866 5554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	472
d2ab0a1	195	c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherich	7e-39
d2ab0a1	195	c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherich	2e-38
d1p5fa_	186	c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId:	1e-36
d1p5fa_	186	c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId:	2e-36
d2fexa1	188	c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {	3e-35
d2fexa1	188	c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {	2e-29
d1g2ia_	166	c.23.16.2 (A:) Intracellular protease {Archaeon Py	1e-28
d1g2ia_	166	c.23.16.2 (A:) Intracellular protease {Archaeon Py	4e-28
d1oi4a1	170	c.23.16.2 (A:23-192) Hypothetical protein YhbO {Es	8e-28
d1oi4a1	170	c.23.16.2 (A:23-192) Hypothetical protein YhbO {Es	6e-26
d1sy7a1	184	c.23.16.3 (A:553-736) Catalase, C-terminal domain	2e-23
d1sy7a1	184	c.23.16.3 (A:553-736) Catalase, C-terminal domain	6e-20
d1vhqa_	217	c.23.16.2 (A:) Putative sigma cross-reacting prote	4e-23
d1vhqa_	217	c.23.16.2 (A:) Putative sigma cross-reacting prote	1e-21
d1u9ca_	221	c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothe	7e-23
d1u9ca_	221	c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothe	4e-20
d1qvwa_	236	c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Bake	5e-16
d1qvwa_	236	c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Bake	1e-13
d1n57a_	279	c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia col	2e-14
d1n57a_	279	c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia col	3e-13
d1p80a1	156	c.23.16.3 (A:598-753) Catalase, C-terminal domain	2e-14
d1p80a1	156	c.23.16.3 (A:598-753) Catalase, C-terminal domain	6e-12

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

 Score =  137 bits (346), Expect = 7e-39
 Identities = 63/188 (33%), Positives = 95/188 (50%), Gaps = 4/188 (2%)

Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEP--QLEVEASSGTRLVADTSISNC 142
              LV +  G+EE EAV  +D+L R G +VT ASV     L +  S G +L+AD  +   
Sbjct: 2   ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEV 61

Query: 143 SHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRK 202
           +   +D+I LPGG+ G+   RD  +L +   +     R+  AICAAPA  L+P  +    
Sbjct: 62  ADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIG 121

Query: 203 QITCHPAFTDKLPTFWAVKSNIHVSGEVT--TSRGPGTSFEFALCLVEQLFGESVAKEIG 260
            +T  P   DK+P    +   +     V   TS+GPGT+ +F L +++ L G   A E+ 
Sbjct: 122 NMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVA 181

Query: 261 ELLLMHNA 268
             L+M   
Sbjct: 182 SQLVMAAG 189

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

 Score =  136 bits (344), Expect = 2e-38
 Identities = 67/184 (36%), Positives = 102/184 (55%), Gaps = 5/184 (2%)

Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASV--ERSTQIVASQGVKIIADKSISDAA 346
             L+ +A GSEE E VT +D+L R  + V  ASV  + +  I  S+GVK++AD  + + A
Sbjct: 3   SALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVA 62

Query: 347 ESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSP-IVLHKHGLLKAKK 405
           +  YD+I+LPGG+ GAE  + S +L + +K+   +GRI  A+C++P  VL  H +     
Sbjct: 63  DGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGN 122

Query: 406 ATAHPSVIGKLTNEVVNGTKVVVDG--KVITSRGLANVIDFALAIVSKFFGHARTRSVAE 463
            T  P++  K+  E     +VV D   K++TS+G    IDF L I+    G  +   VA 
Sbjct: 123 MTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVAS 182

Query: 464 GLVF 467
            LV 
Sbjct: 183 QLVM 186

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (329), Expect = 1e-36
 Identities = 67/184 (36%), Positives = 98/184 (53%), Gaps = 4/184 (2%)

Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 347
           R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 3   RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 62

Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKAT 407
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+C+ P  L  H +    K T
Sbjct: 63  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 122

Query: 408 AHPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
            HP    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 123 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 182

Query: 465 LVFE 468
           LV +
Sbjct: 183 LVLK 186

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (328), Expect = 2e-36
 Identities = 68/185 (36%), Positives = 101/185 (54%), Gaps = 5/185 (2%)

Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNC-S 143
           K+ LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   
Sbjct: 2   KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 61

Query: 144 HQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
              +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P    L   +    +
Sbjct: 62  EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTAL-LAHEIGFGSK 120

Query: 204 ITCHPAFTDKLPTFWAV---KSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
           +T HP   DK+         ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++ 
Sbjct: 121 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 180

Query: 261 ELLLM 265
             L++
Sbjct: 181 APLVL 185

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

 Score =  127 bits (320), Expect = 3e-35
 Identities = 37/173 (21%), Positives = 70/173 (40%), Gaps = 11/173 (6%)

Query: 287 MPRVLIPIANGSEEIEIVTIVDILRR-AKVDVVVASVERSTQIVASQGVKIIADKSISDA 345
           M R+ I +A    + E   +    R    V++V A+ +    + +  G+K+  D S    
Sbjct: 1   MTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMP-VTSMGGLKVTPDTSYDAL 59

Query: 346 AESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKK 405
                D +++PGG++  +       L  L+K  +   R+   +C++   L   G+L    
Sbjct: 60  DPVDIDALVIPGGLSWEKGTAAD--LGGLVKRFRDRDRLVAGICAAASALGGTGVLNDVA 117

Query: 406 ATAHPSVIGKLTN------EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKF 452
            T +     K            +  + V DG V+T+ G A  + FA+ I+   
Sbjct: 118 HTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGSA-PVSFAVEILKSL 169

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

 Score =  111 bits (279), Expect = 2e-29
 Identities = 35/191 (18%), Positives = 67/191 (35%), Gaps = 14/191 (7%)

Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRR-AGAQVTMASVEPQLEVEASSGTRLVADTSISNCS 143
            ++ + +     + E  ++    R   G ++  A+ +    V +  G ++  DTS     
Sbjct: 2   TRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM-PVTSMGGLKVTPDTSYDALD 60

Query: 144 HQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
               D + +PGG+           L  +  +  +  RL   ICAA +      G+L    
Sbjct: 61  PVDIDALVIPGGLSWEKGT--AADLGGLVKRFRDRDRLVAGICAAASAL-GGTGVLNDVA 117

Query: 204 ITCHPAFTDKLPT------FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQL--FGESV 255
            T +   + K          +  +      G V T+ G      FA+ +++ L  FG   
Sbjct: 118 HTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGS-APVSFAVEILKSLGLFGPEA 176

Query: 256 AKEIGELLLMH 266
             E+      H
Sbjct: 177 EAELQIFAAEH 187

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  108 bits (271), Expect = 1e-28
 Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 4/163 (2%)

Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAES 348
           +VL   AN  E++E++     L+    +V +AS ER T I    G  +  D +       
Sbjct: 2   KVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERGT-ITGKHGYSVKVDLTFDKVNPE 60

Query: 349 VYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATA 408
            +D ++LPGG A        + +    K     G+   ++C  P +L   G+L+ +K T+
Sbjct: 61  EFDALVLPGGRAPERVRLNEKAVSIARKMFS-EGKPVASICHGPQILISAGVLRGRKGTS 119

Query: 409 HPSVIGKLTNEVVN--GTKVVVDGKVITSRGLANVIDFALAIV 449
           +P +   + N  V     +VVVDG  ++SR  A++  +    V
Sbjct: 120 YPGIKDDMINAGVEWVDAEVVVDGNWVSSRVPADLYAWMREFV 162

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  107 bits (268), Expect = 4e-28
 Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 5/167 (2%)

Query: 86  KVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ 145
           KVL       E++E +     L+  G +V +AS E    +    G  +  D +    + +
Sbjct: 2   KVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERG-TITGKHGYSVKVDLTFDKVNPE 60

Query: 146 VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQIT 205
            FD + LPGG        + + +       +E K +           L+  G+LR ++ T
Sbjct: 61  EFDALVLPGGRAPERVRLNEKAVSIARKMFSEGKPVA--SICHGPQILISAGVLRGRKGT 118

Query: 206 CHPAFTDKLPTFWA--VKSNIHVSGEVTTSRGPGTSFEFALCLVEQL 250
            +P   D +       V + + V G   +SR P   + +    V+ L
Sbjct: 119 SYPGIKDDMINAGVEWVDAEVVVDGNWVSSRVPADLYAWMREFVKLL 165

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

 Score =  106 bits (266), Expect = 8e-28
 Identities = 33/165 (20%), Positives = 72/165 (43%), Gaps = 5/165 (3%)

Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQ-GVKIIADKSISDAAE 347
           ++ + I +  E+ E  +  D  R+A  +V+    +    +   +    +  DKSI +   
Sbjct: 3   KIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTP 62

Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKAT 407
           + +D ++LP G    + L+         ++   +G+   A+C  P +L    +++ +K T
Sbjct: 63  AEFDALLLP-GGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLT 121

Query: 408 AHPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIV 449
           A   +I  + N   E  +   VV   +++TSR   ++  F    +
Sbjct: 122 AVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREAL 166

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

 Score =  101 bits (252), Expect = 6e-26
 Identities = 38/170 (22%), Positives = 60/170 (35%), Gaps = 6/170 (3%)

Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASS-GTRLVADTSISNCS 143
           KK+ V +    E+ E     D  R+AG +V     +    V+       +  D SI   +
Sbjct: 2   KKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVT 61

Query: 144 HQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
              FD + LPGG      LR        T       +   AIC  P   L+   ++R ++
Sbjct: 62  PAEFDALLLPGGHSPD-YLRGDNRFVTFTRDFVNSGKPVFAICHGPQ-LLISADVIRGRK 119

Query: 204 ITCHPAFTDKLPTFWAVKSNIHV---SGEVTTSRGPGTSFEFALCLVEQL 250
           +T        +    A   +  V     ++ TSR P     F    +  L
Sbjct: 120 LTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLL 169

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]} Length = 184

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

 Score = 94.6 bits (234), Expect = 2e-23
 Identities = 31/165 (18%), Positives = 59/165 (35%), Gaps = 3/165 (1%)

Query: 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA 345
           +  RV I IA+G + +        +   +   +V    R +++ A+ G  +     +   
Sbjct: 2   KSRRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRR-SKVTAANGSTVQPHHHLEGF 60

Query: 346 AESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKK 405
             ++ D I +PGG   AE L K+      ++E     +  GA   +  ++ K   L    
Sbjct: 61  RSTMVDAIFIPGGAKAAETLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIALPQVT 120

Query: 406 ATAHPSVIGKLTNEVVNGTK--VVVDGKVITSRGLANVIDFALAI 448
            ++   V        +   K     D   I       + +F  AI
Sbjct: 121 VSSEAEVHESYGVVTLKKVKPESFTDAVKIAKGAAGFLGEFFYAI 165

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]} Length = 184

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

 Score = 85.0 bits (209), Expect = 6e-20
 Identities = 22/169 (13%), Positives = 49/169 (28%), Gaps = 4/169 (2%)

Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           ++V + +  G + +        +    A   +       +V A++G+ +     +     
Sbjct: 4   RRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRS-KVTAANGSTVQPHHHLEGFRS 62

Query: 145 QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQI 204
            + D I +PGG   +  L           +     +  GA   A  + +     L +  +
Sbjct: 63  TMVDAIFIPGGAKAAETLSKNGRALHWIREAFGHLKAIGATGEAVDL-VAKAIALPQVTV 121

Query: 205 TCHPAFTDKL--PTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLF 251
           +      +     T   VK               G   EF   + +   
Sbjct: 122 SSEAEVHESYGVVTLKKVKPESFTDAVKIAKGAAGFLGEFFYAIAQHRN 170

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

 Score = 95.1 bits (236), Expect = 4e-23
 Identities = 37/216 (17%), Positives = 69/216 (31%), Gaps = 37/216 (17%)

Query: 85  KKVLV-----PVGFGTEEMEAVIIVDVLRRAGAQVTMASVE-PQLEV------------- 125
           KK+ V      V  G+E  EAV+ +  + R+GAQ    + +  Q++V             
Sbjct: 2   KKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETR 61

Query: 126 ---EASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL----------RDCEILKKIT 172
                ++         ++       D + +PGG   +  L               LK + 
Sbjct: 62  NVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALA 121

Query: 173 SKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTT 232
               +  +  G +C APA+    +    R  I       + L    A      V   V  
Sbjct: 122 QAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTAEVLEEMGAEHVPCPVDDIVVD 181

Query: 233 SRGPGTS---FEFALCLVEQLFGESVAKEIGELLLM 265
                 +   +  A  + E      + K +  +L++
Sbjct: 182 EDNKIVTTPAYMLAQNIAE--AASGIDKLVSRVLVL 215

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

 Score = 91.3 bits (226), Expect = 1e-21
 Identities = 37/207 (17%), Positives = 70/207 (33%), Gaps = 42/207 (20%)

Query: 287 MPRVLIPIAN-----GSEEIEIVTIVDILRRAKVDVVVASV-----------------ER 324
           M ++ + ++      GSE  E V  +  + R+    V  +                  E 
Sbjct: 1   MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTET 60

Query: 325 STQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRI----------LKKL 374
              ++ +  +     + ++ A  +  D +I+PGG   A+ L               LK L
Sbjct: 61  RNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKAL 120

Query: 375 LKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVI--------GKLTNEVVNGTKV 426
            +    AG+  G +C +P +L K      +                  +     V+   V
Sbjct: 121 AQAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTAEVLEEMGAEHVPCPVDDIVV 180

Query: 427 VVDGKVITSRG--LANVIDFALAIVSK 451
             D K++T+    LA  I  A + + K
Sbjct: 181 DEDNKIVTTPAYMLAQNIAEAASGIDK 207

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 94.5 bits (234), Expect = 7e-23
 Identities = 39/215 (18%), Positives = 70/215 (32%), Gaps = 49/215 (22%)

Query: 85  KKVLVPVG----------FGTEEMEAVIIVDVLRRAGAQVTMASVE------------PQ 122
           K+VL+ V            G    E  +   V +  G  V +AS++             +
Sbjct: 3   KRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEK 62

Query: 123 LEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLY 182
               A +   L     +S      FD I LPGG        D E L+ +  + AE+ R+ 
Sbjct: 63  DPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRII 122

Query: 183 GAICAAPAVTLL-----PWGLLRRKQITCHPAFTDKLP-----TFWAVK----------- 221
            A+C  P+  +         +++ K +T      ++         + ++           
Sbjct: 123 AAVCHGPSGLVNATYKDGTPIVKGKTVTSFTDEEEREVGLDVHMPFLLESTLRLRGANFV 182

Query: 222 ------SNIHVSGEVTTSRGPGTSFEFALCLVEQL 250
                       G + T + P +S   A  +V  L
Sbjct: 183 RGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAAL 217

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 86.4 bits (213), Expect = 4e-20
 Identities = 41/214 (19%), Positives = 64/214 (29%), Gaps = 50/214 (23%)

Query: 289 RVLIPIAN----------GSEEIEIVTIVDILRRAKVDVVVASVE------------RST 326
           RVL+ + N          G    E      + +    DV VAS++               
Sbjct: 4   RVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKD 63

Query: 327 QIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYG 386
              A     +     +S      +D I LPGG         +  L+ +L++    GRI  
Sbjct: 64  PSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIA 123

Query: 387 AVCSSPIVLHK------HGLLKAKKATAHPSVIGKLTN------------------EVVN 422
           AVC  P  L          ++K K  T+      +                       V 
Sbjct: 124 AVCHGPSGLVNATYKDGTPIVKGKTVTSFTDEEEREVGLDVHMPFLLESTLRLRGANFVR 183

Query: 423 G----TKVVVDGKVITSRGLANVIDFALAIVSKF 452
           G       V DG +IT +   +    A  +V+  
Sbjct: 184 GGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAAL 217

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.2 bits (184), Expect = 5e-16
 Identities = 32/233 (13%), Positives = 61/233 (26%), Gaps = 66/233 (28%)

Query: 84  PKKVLVPVG------------FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASS-- 129
           PKKVL+ +              G   +EA+   +  R+ G +V   S   +   +  S  
Sbjct: 2   PKKVLLALTSYNDVFYSDGMKTGVFVVEALHPFNTFRKEGFEVDFVSETGKFGWDEHSLA 61

Query: 130 -------------------GTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKK 170
                                 L    +    +   + +     G          + L+ 
Sbjct: 62  KDFLNGQDETDFKNKDSDFNKTLAKIKTPKEVNADDYQIFMASAGHGTLFDYPKAKDLQD 121

Query: 171 ITSKQAEEKRLYGAICAAPAVTL------LPWGLLRRKQITCHPAFTDKL---------P 215
           I S+      +  A+C  PA+            L+  K IT      + +          
Sbjct: 122 IASEIYANGGVVAAVCHGPAMFDGLTDKKTGRPLIEGKSITGFTDVGETIMGVDSILKAK 181

Query: 216 TFWAVK------------------SNIHVSGEVTTSRGPGTSFEFALCLVEQL 250
               V+                        G + T   P ++   A+  ++ L
Sbjct: 182 NLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDAL 234

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.9 bits (165), Expect = 1e-13
 Identities = 27/228 (11%), Positives = 58/228 (25%), Gaps = 67/228 (29%)

Query: 289 RVLIPIAN------------GSEEIEIVTIVDILRRAKVDVVVASVERSTQIV------- 329
           +VL+ + +            G   +E +   +  R+   +V   S               
Sbjct: 4   KVLLALTSYNDVFYSDGMKTGVFVVEALHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKD 63

Query: 330 --------------ASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLL 375
                         +     +   K+  +     Y + +   G        K++ L+ + 
Sbjct: 64  FLNGQDETDFKNKDSDFNKTLAKIKTPKEVNADDYQIFMASAGHGTLFDYPKAKDLQDIA 123

Query: 376 KEQKVAGRIYGAVCSSPIVL-------HKHGLLKAKKATAHPSVIGKLTNEVVN------ 422
            E    G +  AVC  P +            L++ K  T    V   +            
Sbjct: 124 SEIYANGGVVAAVCHGPAMFDGLTDKKTGRPLIEGKSITGFTDVGETIMGVDSILKAKNL 183

Query: 423 ---------------------GTKVVVDGKVITSRGLANVIDFALAIV 449
                                    + DG+++T    A+    A+  +
Sbjct: 184 ATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSI 231

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]} Length = 279

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

 Score = 71.3 bits (174), Expect = 2e-14
 Identities = 28/206 (13%), Positives = 57/206 (27%), Gaps = 49/206 (23%)

Query: 94  GTEEMEAVIIVDVLRRAGAQVTMASVEP-QLEVEASS--------------------GTR 132
           G   +E ++ +  L  AG +  +A++     + E  +                      +
Sbjct: 68  GNHPIETLLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLFRNPK 127

Query: 133 LVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAV- 191
            +AD   S  +   +  I +PGG    + L + + +        +  R   ++C  PA  
Sbjct: 128 KLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAF 187

Query: 192 --TLLPWGLLRRKQITCHPAFTDKL---------PTFWAVK----------------SNI 224
                    L    I   P   DK             W                     +
Sbjct: 188 LALRHGDNPLNGYSICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRV 247

Query: 225 HVSGEVTTSRGPGTSFEFALCLVEQL 250
           H   ++ T   P  +        +++
Sbjct: 248 HKDRKLLTGDSPFAANALGKLAAQEM 273

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]} Length = 279

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

 Score = 67.8 bits (165), Expect = 3e-13
 Identities = 34/205 (16%), Positives = 55/205 (26%), Gaps = 50/205 (24%)

Query: 295 ANGSEEIEIVTIVDILRRAKVDVVVASVE---------------------RSTQIVASQG 333
           + G+  IE +  +  L  A  +  VA++                              + 
Sbjct: 66  STGNHPIETLLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLFRN 125

Query: 334 VKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPI 393
            K +AD   S  A+S Y  I +PGG      L +S+ +   L+      R   ++C  P 
Sbjct: 126 PKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPA 185

Query: 394 VLH----KHGLLKAKKATAHPSVIGKLTNEVVNG-------------------------T 424
                      L      A P    K T E+                             
Sbjct: 186 AFLALRHGDNPLNGYSICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITG 245

Query: 425 KVVVDGKVITSRGLANVIDFALAIV 449
           +V  D K++T               
Sbjct: 246 RVHKDRKLLTGDSPFAANALGKLAA 270

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

 Score = 68.6 bits (167), Expect = 2e-14
 Identities = 14/118 (11%), Positives = 35/118 (29%), Gaps = 3/118 (2%)

Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAES 348
            V I + +     +++ I+  L+   V   +       ++ A  G  +    + + A   
Sbjct: 5   VVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRM-GEVTADDGTVLPIAATFAGAPSL 63

Query: 349 VYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKA 406
             D +I+P G      +  +      L E     +       +        +    + 
Sbjct: 64  TVDAVIVPCG--NIADIADNGDANYYLMEAYKHLKPIALAGDARKFKATIKIADQGEE 119

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

 Score = 61.3 bits (148), Expect = 6e-12
 Identities = 13/107 (12%), Positives = 29/107 (27%), Gaps = 3/107 (2%)

Query: 85  KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
           + V + +       + + I+  L+  G    +          A  GT L    + +    
Sbjct: 4   RVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVT-ADDGTVLPIAATFAGAPS 62

Query: 145 QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAV 191
              D + +P G      + D         +  +  +       A   
Sbjct: 63  LTVDAVIVPCGNIA--DIADNGDANYYLMEAYKHLKPIALAGDARKF 107

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	472
d1p5fa_	186	DJ-1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1p5fa_	186	DJ-1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ab0a1	195	Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]	100.0
d2ab0a1	195	Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]	100.0
d1g2ia_	166	Intracellular protease {Archaeon Pyrococcus horiko	100.0
d1g2ia_	166	Intracellular protease {Archaeon Pyrococcus horiko	100.0
d2fexa1	188	Hypothetical protein Atu0886 {Agrobacterium tumefa	100.0
d1oi4a1	170	Hypothetical protein YhbO {Escherichia coli [TaxId	100.0
d2fexa1	188	Hypothetical protein Atu0886 {Agrobacterium tumefa	99.97
d1oi4a1	170	Hypothetical protein YhbO {Escherichia coli [TaxId	99.97
d1sy7a1	184	Catalase, C-terminal domain {Neurospora crassa [Ta	99.97
d1sy7a1	184	Catalase, C-terminal domain {Neurospora crassa [Ta	99.97
d1u9ca_	221	GK2698 ortholog {Bacillus stearothermophilus [TaxI	99.93
d1u9ca_	221	GK2698 ortholog {Bacillus stearothermophilus [TaxI	99.93
d1qvwa_	236	Hypothetical protein Ydr533Cp {Baker's yeast (Sacc	99.92
d1qvwa_	236	Hypothetical protein Ydr533Cp {Baker's yeast (Sacc	99.91
d1n57a_	279	HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}	99.88
d1p80a1	156	Catalase, C-terminal domain {Escherichia coli, HPI	99.87
d1n57a_	279	HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}	99.87
d1vhqa_	217	Putative sigma cross-reacting protein 27A (SCRP-27	99.86
d1vhqa_	217	Putative sigma cross-reacting protein 27A (SCRP-27	99.86
d1p80a1	156	Catalase, C-terminal domain {Escherichia coli, HPI	99.84
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	98.17
d2nv0a1	195	Hypothetical protein YaaE {Bacillus subtilis [TaxI	98.07
d1o1ya_	230	Hypothetical protein TM1158 {Thermotoga maritima [	98.07
d1t3ta2	262	FGAM synthase PurL, amidotransferase domain {Salmo	98.01
d2nv0a1	195	Hypothetical protein YaaE {Bacillus subtilis [TaxI	97.95
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	97.92
d1t3ta2	262	FGAM synthase PurL, amidotransferase domain {Salmo	97.62
d1o1ya_	230	Hypothetical protein TM1158 {Thermotoga maritima [	97.28
d1jvna2	232	GAT subunit, HisH, (or domain) of imidazoleglycero	97.25
d2a9va1	196	GMP synthase subunit A, GuaAA {Archaeon Thermoplas	97.09
d1k9vf_	200	GAT subunit, HisH, (or domain) of imidazoleglycero	97.01
d2abwa1	218	Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p	96.93
d1jvna2	232	GAT subunit, HisH, (or domain) of imidazoleglycero	96.85
d1a9xb2	228	Carbamoyl phosphate synthetase, small subunit C-te	96.7
d1k9vf_	200	GAT subunit, HisH, (or domain) of imidazoleglycero	96.61
d2abwa1	218	Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p	96.43
d2a9va1	196	GMP synthase subunit A, GuaAA {Archaeon Thermoplas	95.86
d2ghra1	281	Homoserine O-succinyltransferase HTS (MetA) {Bacil	95.84
d1wl8a1	188	GMP synthase subunit A, GuaAA {Archaeon Pyrococcus	95.75
d2ghra1	281	Homoserine O-succinyltransferase HTS (MetA) {Bacil	95.53
d1qdlb_	195	Anthranilate synthase GAT subunit, TrpG {Archaeon	95.52
d1qdlb_	195	Anthranilate synthase GAT subunit, TrpG {Archaeon	94.73
d1ka9h_	195	GAT subunit, HisH, (or domain) of imidazoleglycero	94.69
d1i7qb_	192	Anthranilate synthase GAT subunit, TrpG {Serratia	94.37
d1wl8a1	188	GMP synthase subunit A, GuaAA {Archaeon Pyrococcus	94.37
d1ka9h_	195	GAT subunit, HisH, (or domain) of imidazoleglycero	93.8
d1i7qb_	192	Anthranilate synthase GAT subunit, TrpG {Serratia	93.28
d1a9xb2	228	Carbamoyl phosphate synthetase, small subunit C-te	92.91
d1gpma2	205	GMP synthetase {Escherichia coli [TaxId: 562]}	92.38
d1gpma2	205	GMP synthetase {Escherichia coli [TaxId: 562]}	91.08
d1vcoa1	250	CTP synthase PyrG, C-terminal domain {Thermus ther	89.72
d1fyea_	229	Aspartyl dipeptidase PepE {Salmonella typhimurium	89.45
d1s1ma1	258	CTP synthase PyrG, C-terminal domain {Escherichia	89.38
d1l9xa_	288	gamma-glutamyl hydrolase {Human (Homo sapiens) [Ta	83.89
d1s1ma1	258	CTP synthase PyrG, C-terminal domain {Escherichia	82.19

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-39  Score=295.21  Aligned_cols=182  Identities=36%  Similarity=0.558  Sum_probs=170.2

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCC-CcccEEEEcCCCcchhcc
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAE-SVYDLIILPGGVAGAERL  365 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~-~~~D~livpGG~~~~~~~  365 (472)
                      +|||+|+++|||+++|+..|+++|+++||+|+++|++++.++++++|+.+.+|..++++.. .+||+|+||||....+.+
T Consensus         1 sKkvlvll~~Gfe~~E~~~p~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~d~~~~~~~D~liipGG~~~~~~l   80 (186)
T d1p5fa_           1 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNL   80 (186)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHHTCCCSEEEECCCHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEEecCCcceecCCCccccCccchhccCCcccccEEEEecCccccccc
Confidence            4899999999999999999999999999999999998765899999999999999988643 589999999997556777


Q ss_pred             cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc---ceecCCcEEECCCEEEcCChhhHH
Q 012037          366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVI  442 (472)
Q Consensus       366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~---~~~~~~~vv~dg~iiTa~g~~~~~  442 (472)
                      ..++.+++|||++++++++|+++|+|+++||++|||+||++|+||...+.+++   .++.++.+|+|||+|||+|+++++
T Consensus        81 ~~~~~l~~~lr~~~~~~k~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~vv~Dg~iiT~~g~~~~~  160 (186)
T d1p5fa_          81 SESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSF  160 (186)
T ss_dssp             HHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCSTTCEECCCGGGHHHHTTTSCSEECCCSEEEETTEEEECSGGGHH
T ss_pred             cchHHHHHHHHHhhccccceeecccCcchhhhcCCccccccccchhHHHHHHhcCceEEecccEEecCCEEECCCccHHH
Confidence            88999999999999999999999999999999999999999999999999876   467889999999999999999999


Q ss_pred             HHHHHHHHHhcCHHHHHHHHhhcccc
Q 012037          443 DFALAIVSKFFGHARTRSVAEGLVFE  468 (472)
Q Consensus       443 d~al~li~~~~g~~~A~~va~~l~~~  468 (472)
                      ||++++|+++.|++.|+++++.|+++
T Consensus       161 d~al~li~~l~g~~~a~~va~~l~l~  186 (186)
T d1p5fa_         161 EFALAIVEALNGKEVAAQVKAPLVLK  186 (186)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHGGGTCC
T ss_pred             HHHHHHHHHhcCHHHHHHHHHhhccC
Confidence            99999999999999999999999874

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-38  Score=285.95  Aligned_cols=182  Identities=37%  Similarity=0.582  Sum_probs=168.2

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCC-CcccEEEEcCCccccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH-QVFDLIALPGGMPGSVRL  162 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~-~~~D~vivpGG~~~~~~l  162 (472)
                      +|||+||++|||++.|+..|+++|+++|++|+++|++++.++++++|..+.+|.+++++.. .+||+|+||||......+
T Consensus         1 sKkvlvll~~Gfe~~E~~~p~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~d~~~~~~~D~liipGG~~~~~~l   80 (186)
T d1p5fa_           1 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNL   80 (186)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHHTCCCSEEEECCCHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEEecCCcceecCCCccccCccchhccCCcccccEEEEecCccccccc
Confidence            5899999999999999999999999999999999998766899999999999999987643 479999999996566778


Q ss_pred             cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC---CccccCcEEEeCCEEeCCCCCCh
Q 012037          163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTS  239 (472)
Q Consensus       163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~---~~~~~~~~v~Dg~iiTa~g~~~~  239 (472)
                      .+++.+.+|||++++++|+|+++|+| .++|+++|||+||++|+||...+.+++   ..+.++.+|+|||+|||+|+.++
T Consensus        81 ~~~~~l~~~lr~~~~~~k~i~aiC~G-~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~vv~Dg~iiT~~g~~~~  159 (186)
T d1p5fa_          81 SESAAVKEILKEQENRKGLIAAICAG-PTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTS  159 (186)
T ss_dssp             HHCHHHHHHHHHHHHTTCEEEEETTT-HHHHHHTTCSTTCEECCCGGGHHHHTTTSCSEECCCSEEEETTEEEECSGGGH
T ss_pred             cchHHHHHHHHHhhccccceeecccC-cchhhhcCCccccccccchhHHHHHHhcCceEEecccEEecCCEEECCCccHH
Confidence            88999999999999999999999996 668999999999999999999999988   34567889999999999999999


Q ss_pred             HHHHHHHHHHHhCchhHHhhhhccccc
Q 012037          240 FEFALCLVEQLFGESVAKEIGELLLMH  266 (472)
Q Consensus       240 ~dlal~li~~~~g~~~a~~va~~l~~~  266 (472)
                      .||++++|+++.|++.|+++++.|+++
T Consensus       160 ~d~al~li~~l~g~~~a~~va~~l~l~  186 (186)
T d1p5fa_         160 FEFALAIVEALNGKEVAAQVKAPLVLK  186 (186)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHGGGTCC
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHhhccC
Confidence            999999999999999999999999874

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.7e-37  Score=282.04  Aligned_cols=184  Identities=36%  Similarity=0.589  Sum_probs=171.0

Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCC--cceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037          288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERS--TQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  365 (472)
Q Consensus       288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~--~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~  365 (472)
                      ++++|+++|||+++|+..|+|+|+++|+++++++..++  .++++++|+++.+|..+++++..+||+|+||||..+.+.+
T Consensus         2 ~~ali~l~~Gfe~~E~~~p~d~L~rag~~v~~~s~~~~~~~~v~~~~G~~v~~d~~~~d~~~~d~D~liiPGG~~~~~~l   81 (195)
T d2ab0a1           2 ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECF   81 (195)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHHH
T ss_pred             ceEEEEecCCccHHHHHHHHHHHHHCCCEEEEEEEcCCCCceEEeCCCcEeecCcChHHcCcccceEEEEccccCccccc
Confidence            68999999999999999999999999999999997543  3789999999999999999988999999999997556777


Q ss_pred             cccHHHHHHHHHHHHcCCeEEEEchhH-HHHHHcCCCCCceeccChhhHhhhhcceecCCcEEECCC--EEEcCChhhHH
Q 012037          366 QKSRILKKLLKEQKVAGRIYGAVCSSP-IVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGK--VITSRGLANVI  442 (472)
Q Consensus       366 ~~~~~l~~~L~~~~~~g~~v~aic~G~-~lLA~aGlL~g~~~T~~~~~~~~l~~~~~~~~~vv~dg~--iiTa~g~~~~~  442 (472)
                      ..++.+++|||++++++++|+++|+|+ ++|+++|||+||++|+||...+.+....+.++++|+|||  +|||+|+++++
T Consensus        82 ~~~~~l~~~lr~~~~~gk~i~aiC~g~a~lLa~aGlL~g~~~T~~~~~~~~~~~~~~~~~~vv~Dgn~~liTa~g~~a~~  161 (195)
T d2ab0a1          82 RDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAI  161 (195)
T ss_dssp             HHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTTTSSSSSCBCCCGGGGGGSCTTTBCCCSEEEETTTTEEEECSGGGHH
T ss_pred             cccHHHHHHHHHHhhccceeeeeeccchhhhhhcCccCCCEEeccHHHhhhcccceEeecceEEECCCeEEECCCHHHHH
Confidence            889999999999999999999999995 899999999999999999999999888888999999997  69999999999


Q ss_pred             HHHHHHHHHhcCHHHHHHHHhhcccccCC
Q 012037          443 DFALAIVSKFFGHARTRSVAEGLVFEYPR  471 (472)
Q Consensus       443 d~al~li~~~~g~~~A~~va~~l~~~~~r  471 (472)
                      ||++++|++++|++.|+++++.|+++...
T Consensus       162 d~al~lie~l~g~e~A~~va~~l~~~~~~  190 (195)
T d2ab0a1         162 DFGLKIIDLLVGREKAHEVASQLVMAAGI  190 (195)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTTTTCCTTS
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHhcCCcch
Confidence            99999999999999999999999997653

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.6e-37  Score=279.29  Aligned_cols=186  Identities=33%  Similarity=0.559  Sum_probs=172.6

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCC--CcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEP--QLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR  161 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~--g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~  161 (472)
                      ++++.|+++|||++.|+..++++|+++|+++++++...  +.+|++++|.++.+|.++++++..+||+|+||||..+...
T Consensus         1 ~~~ali~l~~Gfe~~E~~~p~d~L~rag~~v~~~s~~~~~~~~v~~~~G~~v~~d~~~~d~~~~d~D~liiPGG~~~~~~   80 (195)
T d2ab0a1           1 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAEC   80 (195)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHH
T ss_pred             CceEEEEecCCccHHHHHHHHHHHHHCCCEEEEEEEcCCCCceEEeCCCcEeecCcChHHcCcccceEEEEccccCcccc
Confidence            36899999999999999999999999999999999643  3379999999999999999988889999999999756677


Q ss_pred             ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCCCccccCcEEEeCC--EEeCCCCCCh
Q 012037          162 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGE--VTTSRGPGTS  239 (472)
Q Consensus       162 l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~v~Dg~--iiTa~g~~~~  239 (472)
                      +.+++.+.+|||++++++|+|+++|+|++++|+++|||+||++||||.+.+.+....++++++|+|||  +|||+|+.++
T Consensus        81 l~~~~~l~~~lr~~~~~gk~i~aiC~g~a~lLa~aGlL~g~~~T~~~~~~~~~~~~~~~~~~vv~Dgn~~liTa~g~~a~  160 (195)
T d2ab0a1          81 FRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTA  160 (195)
T ss_dssp             HHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTTTSSSSSCBCCCGGGGGGSCTTTBCCCSEEEETTTTEEEECSGGGH
T ss_pred             ccccHHHHHHHHHHhhccceeeeeeccchhhhhhcCccCCCEEeccHHHhhhcccceEeecceEEECCCeEEECCCHHHH
Confidence            88899999999999999999999999878899999999999999999999999888889999999996  7999999999


Q ss_pred             HHHHHHHHHHHhCchhHHhhhhccccccCC
Q 012037          240 FEFALCLVEQLFGESVAKEIGELLLMHNAD  269 (472)
Q Consensus       240 ~dlal~li~~~~g~~~a~~va~~l~~~~~~  269 (472)
                      +||++++|++++|.+.|++++++|+++...
T Consensus       161 ~d~al~lie~l~g~e~A~~va~~l~~~~~~  190 (195)
T d2ab0a1         161 IDFGLKIIDLLVGREKAHEVASQLVMAAGI  190 (195)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTTTTCCTTS
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHhcCCcch
Confidence            999999999999999999999999998754

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=2.5e-36  Score=270.06  Aligned_cols=163  Identities=25%  Similarity=0.422  Sum_probs=154.8

Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc
Q 012037          288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK  367 (472)
Q Consensus       288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~  367 (472)
                      |||+|+++|||+++|+..|+++|+++||+++++|++++ +|+++.|+++.+|.++++++..+||+|+||||. +...+..
T Consensus         1 mKv~il~~dgf~~~E~~~p~~~l~~ag~~v~~vs~~~~-~V~~~~g~~i~~d~~~~~~~~~~~d~viipGg~-~~~~~~~   78 (166)
T d1g2ia_           1 MKVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERG-TITGKHGYSVKVDLTFDKVNPEEFDALVLPGGR-APERVRL   78 (166)
T ss_dssp             CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSE-EEECTTSCEEEECEEGGGCCGGGCSEEEECCBS-HHHHHTT
T ss_pred             CEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCc-eEeecCCcEEeccccHHHcCcccccEEEEeccc-chhhhcc
Confidence            68999999999999999999999999999999999997 999999999999999999988899999999997 4666778


Q ss_pred             cHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc--ceecCCcEEECCCEEEcCChhhHHHHH
Q 012037          368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLANVIDFA  445 (472)
Q Consensus       368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~vv~dg~iiTa~g~~~~~d~a  445 (472)
                      ++++++||+++++++++|++||+|+++||++|||+||++|+||...+.+++  ..+.++++|+|||+|||+|+.++.+|+
T Consensus        79 ~~~~~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~vV~Dg~iiTs~g~~~~~~f~  158 (166)
T d1g2ia_          79 NEKAVSIARKMFSEGKPVASICHGPQILISAGVLRGRKGTSYPGIKDDMINAGVEWVDAEVVVDGNWVSSRVPADLYAWM  158 (166)
T ss_dssp             CHHHHHHHHHHHHTTCCEEEETTTTHHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTEEEECSGGGHHHHH
T ss_pred             ChHHHHHHHHHHhcCCeeeeccccchhhhhcCcccCCccccCccHHHHHHHcCCeEcCCCEEEeCCEEECCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999876  577899999999999999999999999


Q ss_pred             HHHHHHh
Q 012037          446 LAIVSKF  452 (472)
Q Consensus       446 l~li~~~  452 (472)
                      +++|+.+
T Consensus       159 ~~~i~~L  165 (166)
T d1g2ia_         159 REFVKLL  165 (166)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9999986

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=2.6e-35  Score=263.40  Aligned_cols=163  Identities=26%  Similarity=0.360  Sum_probs=153.5

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccC
Q 012037           85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD  164 (472)
Q Consensus        85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~  164 (472)
                      |||+|+++|||++.|+..++++|+++|++++++|++++ +|+++.|..+.+|.+++++++.+||+|+||||. +...+..
T Consensus         1 mKv~il~~dgf~~~E~~~p~~~l~~ag~~v~~vs~~~~-~V~~~~g~~i~~d~~~~~~~~~~~d~viipGg~-~~~~~~~   78 (166)
T d1g2ia_           1 MKVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERG-TITGKHGYSVKVDLTFDKVNPEEFDALVLPGGR-APERVRL   78 (166)
T ss_dssp             CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSE-EEECTTSCEEEECEEGGGCCGGGCSEEEECCBS-HHHHHTT
T ss_pred             CEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCc-eEeecCCcEEeccccHHHcCcccccEEEEeccc-chhhhcc
Confidence            68999999999999999999999999999999999976 999999999999999999988899999999994 5666778


Q ss_pred             ChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC--CccccCcEEEeCCEEeCCCCCChHHH
Q 012037          165 CEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRGPGTSFEF  242 (472)
Q Consensus       165 ~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~~v~Dg~iiTa~g~~~~~dl  242 (472)
                      ++++.+||+++++++|+|+++|+| .++|+++|||+||++||||...+.+++  .+++++++|+|||+|||+|+.++.+|
T Consensus        79 ~~~~~~~l~~~~~~~k~i~aiC~G-~~~La~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~vV~Dg~iiTs~g~~~~~~f  157 (166)
T d1g2ia_          79 NEKAVSIARKMFSEGKPVASICHG-PQILISAGVLRGRKGTSYPGIKDDMINAGVEWVDAEVVVDGNWVSSRVPADLYAW  157 (166)
T ss_dssp             CHHHHHHHHHHHHTTCCEEEETTT-THHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTEEEECSGGGHHHH
T ss_pred             ChHHHHHHHHHHhcCCeeeecccc-chhhhhcCcccCCccccCccHHHHHHHcCCeEcCCCEEEeCCEEECCCHHHHHHH
Confidence            999999999999999999999996 568999999999999999999998877  67889999999999999999999999


Q ss_pred             HHHHHHHH
Q 012037          243 ALCLVEQL  250 (472)
Q Consensus       243 al~li~~~  250 (472)
                      ++++|+.+
T Consensus       158 ~~~~i~~L  165 (166)
T d1g2ia_         158 MREFVKLL  165 (166)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99999986

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=100.00  E-value=1.6e-34  Score=263.09  Aligned_cols=176  Identities=22%  Similarity=0.346  Sum_probs=154.1

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHh-CCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRR-AKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  365 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~-a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~  365 (472)
                      |+||+|+++|||+++|+..+.+.|++ +|++|+++|++++ +|++++|+.+.+|..+++++..+||+|+||||.. .. .
T Consensus         1 M~kv~vll~~gf~~~E~~~~~~~l~~~~g~~v~~vs~~~~-~V~s~~G~~v~~d~~l~~~~~~~~D~liipGG~~-~~-~   77 (188)
T d2fexa1           1 MTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM-PVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLS-WE-K   77 (188)
T ss_dssp             CCEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSS-CEECTTCCEEECSEEGGGCCTTTCSEEEECCBSH-HH-H
T ss_pred             CCEEEEEeCCChhHHHHHHHHHHHhhcCCcEEEEEeCCCC-cEEcCCCCEEeecCchHHCChhhccEEEecCCcc-cc-c
Confidence            68999999999999999999999987 7999999999997 9999999999999999999888999999999973 33 3


Q ss_pred             cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChh-hHhhhhc-----ceecCCcEEECCCEEEcCChh
Q 012037          366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPS-VIGKLTN-----EVVNGTKVVVDGKVITSRGLA  439 (472)
Q Consensus       366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~-~~~~l~~-----~~~~~~~vv~dg~iiTa~g~~  439 (472)
                      ..++++++|||++++++++|+++|+|+++||++|||+|+++|+||. ..+.++.     .+..+..+|+|||+|||+| +
T Consensus        78 ~~~~~l~~~lr~~~~~~~~i~aiC~g~~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~vV~DgnliTs~G-~  156 (188)
T d2fexa1          78 GTAADLGGLVKRFRDRDRLVAGICAAASALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAG-S  156 (188)
T ss_dssp             TCCCCCHHHHHHHHHTTCEEEEETHHHHHHHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCCSSCEEETTEEEECT-T
T ss_pred             cccHHHHHHHHHHHHhCCEEEEecchhHHHHHcCccCCcEEeccchHhhhhhhhcCCCceEEeCCEEEECCCEEECCC-c
Confidence            4677899999999999999999999999999999999999999954 4444433     3455677899999999998 5


Q ss_pred             hHHHHHHHHHHHh--cCHHHHHHHHhhccc
Q 012037          440 NVIDFALAIVSKF--FGHARTRSVAEGLVF  467 (472)
Q Consensus       440 ~~~d~al~li~~~--~g~~~A~~va~~l~~  467 (472)
                      +++||++++|+++  +|++.++++ +.+..
T Consensus       157 aa~d~al~ii~~L~~~~~e~~~~~-~~~~~  185 (188)
T d2fexa1         157 APVSFAVEILKSLGLFGPEAEAEL-QIFAA  185 (188)
T ss_dssp             CHHHHHHHHHHHTTCCSHHHHHHH-GGGGG
T ss_pred             hHHHHHHHHHHHhcccCHHHHHHH-HHhhh
Confidence            6899999999997  788888888 44433

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5e-33  Score=249.25  Aligned_cols=165  Identities=21%  Similarity=0.349  Sum_probs=150.4

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCC-cEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQG-VKIIADKSISDAAESVYDLIILPGGVAGAERL  365 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G-~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~  365 (472)
                      .|||+|+++|||++.|+..++++|+++|++++++|++++.+++++.| +++.+|.+++++.+.+||+||||||. +...+
T Consensus         1 ~KkIail~~dgf~~~E~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~~~~~v~~d~~l~~~~~~~yDalivpGG~-~~~~l   79 (170)
T d1oi4a1           1 SKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGH-SPDYL   79 (170)
T ss_dssp             CCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBT-HHHHH
T ss_pred             CCEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEeccCCCCceeeeeccCeEEecCCcHHHCChhhceEEEEccch-hhhhh
Confidence            37999999999999999999999999999999999987657888765 99999999999988999999999997 56678


Q ss_pred             cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc--ceec-CCcEEECCCEEEcCChhhHH
Q 012037          366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVN-GTKVVVDGKVITSRGLANVI  442 (472)
Q Consensus       366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~-~~~vv~dg~iiTa~g~~~~~  442 (472)
                      ..++++++||+++++++++|++||+|+++|+++|+|+||++|+||...+++++  ..+. +..+|+|||+|||+|+.++.
T Consensus        80 ~~~~~~~~~i~~~~~~~k~i~aiC~g~~~La~~glL~g~~~T~~~~~~~~l~~~g~~~~~~~~VVdd~~liTs~g~~~~~  159 (170)
T d1oi4a1          80 RGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLP  159 (170)
T ss_dssp             TTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTTEEEESSGGGHH
T ss_pred             ccChHHHHHHHHHhhcCCeeeecccchHHHhhhhhccccccccCchHHHHHHhCCCEEecCCEEEECCEEEECCChhhHH
Confidence            88999999999999999999999999999999999999999999999888876  3444 44556788999999999999


Q ss_pred             HHHHHHHHHh
Q 012037          443 DFALAIVSKF  452 (472)
Q Consensus       443 d~al~li~~~  452 (472)
                      +|++++|+.|
T Consensus       160 ~fa~~~i~~L  169 (170)
T d1oi4a1         160 AFNREALRLL  169 (170)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999986

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.97  E-value=3.9e-32  Score=247.11  Aligned_cols=171  Identities=21%  Similarity=0.320  Sum_probs=149.6

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHh-CCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRR-AGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL  162 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~-ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l  162 (472)
                      |+||+|+++|||++.|+..+.+.|++ +|++++++|++++ +|++++|+.+.+|.++++++..+||+|+||||.. .. .
T Consensus         1 M~kv~vll~~gf~~~E~~~~~~~l~~~~g~~v~~vs~~~~-~V~s~~G~~v~~d~~l~~~~~~~~D~liipGG~~-~~-~   77 (188)
T d2fexa1           1 MTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM-PVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLS-WE-K   77 (188)
T ss_dssp             CCEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSS-CEECTTCCEEECSEEGGGCCTTTCSEEEECCBSH-HH-H
T ss_pred             CCEEEEEeCCChhHHHHHHHHHHHhhcCCcEEEEEeCCCC-cEEcCCCCEEeecCchHHCChhhccEEEecCCcc-cc-c
Confidence            68999999999999999999999987 7999999999976 9999999999999999999888999999999953 33 3


Q ss_pred             cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcc-hhccCCC----Ccccc-CcEEEeCCEEeCCCC
Q 012037          163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPA-FTDKLPT----FWAVK-SNIHVSGEVTTSRGP  236 (472)
Q Consensus       163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~-~~~~l~~----~~~~~-~~~v~Dg~iiTa~g~  236 (472)
                      ..++++++|||++++++|+|+++|+| .++|+++|||+||++|+||. ..+.++.    ..+.+ ..+|.|||+|||+| 
T Consensus        78 ~~~~~l~~~lr~~~~~~~~i~aiC~g-~~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~vV~DgnliTs~G-  155 (188)
T d2fexa1          78 GTAADLGGLVKRFRDRDRLVAGICAA-ASALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAG-  155 (188)
T ss_dssp             TCCCCCHHHHHHHHHTTCEEEEETHH-HHHHHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCCSSCEEETTEEEECT-
T ss_pred             cccHHHHHHHHHHHHhCCEEEEecch-hHHHHHcCccCCcEEeccchHhhhhhhhcCCCceEEeCCEEEECCCEEECCC-
Confidence            46788999999999999999999996 56899999999999999955 4444444    33444 46899999999998 


Q ss_pred             CChHHHHHHHHHHH--hCchhHHhh
Q 012037          237 GTSFEFALCLVEQL--FGESVAKEI  259 (472)
Q Consensus       237 ~~~~dlal~li~~~--~g~~~a~~v  259 (472)
                      .+++||++++++++  +|++.++++
T Consensus       156 ~aa~d~al~ii~~L~~~~~e~~~~~  180 (188)
T d2fexa1         156 SAPVSFAVEILKSLGLFGPEAEAEL  180 (188)
T ss_dssp             TCHHHHHHHHHHHTTCCSHHHHHHH
T ss_pred             chHHHHHHHHHHHhcccCHHHHHHH
Confidence            67999999999997  688888777

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=3.6e-32  Score=243.60  Aligned_cols=165  Identities=22%  Similarity=0.268  Sum_probs=150.7

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCC-ceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSG-TRLVADTSISNCSHQVFDLIALPGGMPGSVRL  162 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G-~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l  162 (472)
                      .|||+|+++|||++.|+..++++|+++|++++++++++++++.++.| .++.+|.+++++.+.+||+|+||||+ +...+
T Consensus         1 ~KkIail~~dgf~~~E~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~~~~~v~~d~~l~~~~~~~yDalivpGG~-~~~~l   79 (170)
T d1oi4a1           1 SKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGH-SPDYL   79 (170)
T ss_dssp             CCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBT-HHHHH
T ss_pred             CCEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEeccCCCCceeeeeccCeEEecCCcHHHCChhhceEEEEccch-hhhhh
Confidence            47999999999999999999999999999999999998778888776 89999999999998899999999994 56668


Q ss_pred             cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC--CccccCcE-EEeCCEEeCCCCCCh
Q 012037          163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNI-HVSGEVTTSRGPGTS  239 (472)
Q Consensus       163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~~-v~Dg~iiTa~g~~~~  239 (472)
                      ..++++++||+++++++|+|+++|+|+ ++|+++|+|+||++||||...+.+++  .++.++.+ |.|||+|||+|+.++
T Consensus        80 ~~~~~~~~~i~~~~~~~k~i~aiC~g~-~~La~~glL~g~~~T~~~~~~~~l~~~g~~~~~~~~VVdd~~liTs~g~~~~  158 (170)
T d1oi4a1          80 RGDNRFVTFTRDFVNSGKPVFAICHGP-QLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDL  158 (170)
T ss_dssp             TTSHHHHHHHHHHHHTTCCEEEETTTH-HHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTTEEEESSGGGH
T ss_pred             ccChHHHHHHHHHhhcCCeeeecccch-HHHhhhhhccccccccCchHHHHHHhCCCEEecCCEEEECCEEEECCChhhH
Confidence            899999999999999999999999974 58999999999999999999888877  67777765 556889999999999


Q ss_pred             HHHHHHHHHHH
Q 012037          240 FEFALCLVEQL  250 (472)
Q Consensus       240 ~dlal~li~~~  250 (472)
                      .+|++++++.+
T Consensus       159 ~~fa~~~i~~L  169 (170)
T d1oi4a1         159 PAFNREALRLL  169 (170)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999876

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

Probab=99.97  E-value=3.1e-31  Score=240.60  Aligned_cols=166  Identities=13%  Similarity=0.135  Sum_probs=154.0

Q ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037           82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR  161 (472)
Q Consensus        82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~  161 (472)
                      +++|||+||++|||+..|+..++++|+++|+++++++++++ +++++.|..+.+|.++.+.++.+||++++|||......
T Consensus         1 i~~rkI~ilv~dG~~~~e~~~~~~~l~~ag~~v~ivs~~~~-~v~~~~g~~v~~d~~~~~~~~~~~dalivpgg~~~~~~   79 (184)
T d1sy7a1           1 IKSRRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRS-KVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAET   79 (184)
T ss_dssp             CTTCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSS-CEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHH
T ss_pred             CCccEEEEEecCCCcHHHHHHHHHHHHHCCCEEEEEEecCC-cccccccccccccccccccccccceEEEEeeccccccc
Confidence            46899999999999999999999999999999999999987 99999999999999999999899999999999656667


Q ss_pred             ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC--CccccCcEEEeCCEEeCCCCCCh
Q 012037          162 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRGPGTS  239 (472)
Q Consensus       162 l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~~v~Dg~iiTa~g~~~~  239 (472)
                      +..++.+.+||+++++++|+|+++|+| .++|+++|+|+||++||||...+++..  .+++++.++.||+++|+++....
T Consensus        80 ~~~~~~~~~~l~~~~~~~k~i~aic~G-~~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~v~dg~~it~~~~~~~  158 (184)
T d1sy7a1          80 LSKNGRALHWIREAFGHLKAIGATGEA-VDLVAKAIALPQVTVSSEAEVHESYGVVTLKKVKPESFTDAVKIAKGAAGFL  158 (184)
T ss_dssp             HHTCHHHHHHHHHHHHTTCEEEEETTH-HHHHHHHHCCTTSCCCCSSSCEEETTEEEESSCCTTTTTSCCCCSTTCSSHH
T ss_pred             cccccchhHHHHHHHhcCCceEEechH-HHHHHHcCCCCCceeccCcchhhhhccccceeccCceEeECCEEecCCHhHH
Confidence            889999999999999999999999996 679999999999999999999999887  67778889999999999999988


Q ss_pred             HHHHHHHHHH
Q 012037          240 FEFALCLVEQ  249 (472)
Q Consensus       240 ~dlal~li~~  249 (472)
                      .+|+..|.++
T Consensus       159 ~~f~~~i~~h  168 (184)
T d1sy7a1         159 GEFFYAIAQH  168 (184)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHHh
Confidence            8998877654

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

Probab=99.97  E-value=4e-31  Score=239.89  Aligned_cols=165  Identities=19%  Similarity=0.199  Sum_probs=153.1

Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037          286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  365 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~  365 (472)
                      +.+||+|+++|||++.|+..+++.|+++|++++++|++++ +++++.|..+.++.++++.+..+||++++|||......+
T Consensus         2 ~~rkI~ilv~dG~~~~e~~~~~~~l~~ag~~v~ivs~~~~-~v~~~~g~~v~~d~~~~~~~~~~~dalivpgg~~~~~~~   80 (184)
T d1sy7a1           2 KSRRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRS-KVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETL   80 (184)
T ss_dssp             TTCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSS-CEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHH
T ss_pred             CccEEEEEecCCCcHHHHHHHHHHHHHCCCEEEEEEecCC-cccccccccccccccccccccccceEEEEeecccccccc
Confidence            3589999999999999999999999999999999999998 999999999999999999888899999999997556667


Q ss_pred             cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc--ceecCCcEEECCCEEEcCChhhHHH
Q 012037          366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLANVID  443 (472)
Q Consensus       366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~vv~dg~iiTa~g~~~~~d  443 (472)
                      ..++.+++||+++++++++|++||+|+++||++|+|+||++|+||...+++..  ....+..++.|||++|+++.....+
T Consensus        81 ~~~~~~~~~l~~~~~~~k~i~aic~G~~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~v~dg~~it~~~~~~~~~  160 (184)
T d1sy7a1          81 SKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIALPQVTVSSEAEVHESYGVVTLKKVKPESFTDAVKIAKGAAGFLGE  160 (184)
T ss_dssp             HTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHCCTTSCCCCSSSCEEETTEEEESSCCTTTTTSCCCCSTTCSSHHHH
T ss_pred             ccccchhHHHHHHHhcCCceEEechHHHHHHHcCCCCCceeccCcchhhhhccccceeccCceEeECCEEecCCHhHHHH
Confidence            88999999999999999999999999999999999999999999999988875  5667788899999999999999999


Q ss_pred             HHHHHHHH
Q 012037          444 FALAIVSK  451 (472)
Q Consensus       444 ~al~li~~  451 (472)
                      |+.+|.++
T Consensus       161 f~~~i~~h  168 (184)
T d1sy7a1         161 FFYAIAQH  168 (184)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHh
Confidence            98777664

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.93  E-value=1.5e-26  Score=215.08  Aligned_cols=169  Identities=23%  Similarity=0.270  Sum_probs=140.5

Q ss_pred             CCCEEEEEeCC----------CCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCC-------------CcEEeecCCc
Q 012037          286 RMPRVLIPIAN----------GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQ-------------GVKIIADKSI  342 (472)
Q Consensus       286 ~~~~V~il~~~----------g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~-------------G~~v~~d~~l  342 (472)
                      |.|||+|++.+          |++..|+..|+++|+++||+|+++|+.|+ .+....             ...+..+..+
T Consensus         1 M~KkvLiv~s~~~~~~~~~~tG~~~~E~~~P~~~l~~aG~~V~~aS~~gg-~~~~d~~~~~~~~~~~~~~~~~l~~~~~l   79 (221)
T d1u9ca_           1 MSKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGG-EVPLDPRSINEKDPSWAEAEAALKHTARL   79 (221)
T ss_dssp             CCCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCB-CCCBCGGGSSSCCGGGHHHHHHTTSBEEC
T ss_pred             CCceEEEEecCchhccCCCcccccHHHHHHHHHHHHHCCCEEEEEecCCC-cceeccCccccccchhHHHHHHhhCCCCh
Confidence            45789999974          89999999999999999999999999987 433211             1123445567


Q ss_pred             cccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC------CCCCceeccChhhHhh-
Q 012037          343 SDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG------LLKAKKATAHPSVIGK-  415 (472)
Q Consensus       343 ~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG------lL~g~~~T~~~~~~~~-  415 (472)
                      ++++.++||+|+||||+++...+..++.+.++++++++++++|++||+|+.+|+.++      |++||++|+|+...+. 
T Consensus        80 ~~v~~~dYd~v~iPGG~g~~~~l~~~~~l~~li~~~~~~~k~iaAIChgp~~l~~a~~~~g~~ll~Gk~~T~~p~~~e~~  159 (221)
T d1u9ca_          80 SKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTPIVKGKTVTSFTDEEERE  159 (221)
T ss_dssp             CGGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTSCBTTTTCEECCSCHHHHHH
T ss_pred             hHCCHhHCCEEEeCCCCchhhcchhhHHHHHHHHHHHhccCcceeecccceeeeccccCCCCceeCCceeeccCCHHHhh
Confidence            888889999999999997777899999999999999999999999999999999855      8999999999865443 


Q ss_pred             --------------hhc--ceec-----CCcEEECCCEEEcCChhhHHHHHHHHHHHhcCH
Q 012037          416 --------------LTN--EVVN-----GTKVVVDGKVITSRGLANVIDFALAIVSKFFGH  455 (472)
Q Consensus       416 --------------l~~--~~~~-----~~~vv~dg~iiTa~g~~~~~d~al~li~~~~g~  455 (472)
                                    +++  ..+.     +..+|+|||+||++|+.++.+|++.+|+.+-.+
T Consensus       160 ~~~~~~~p~~~~~~l~~~Ga~y~~~~~~~~~Vv~Dg~lITg~~p~sa~~fa~~~v~~L~~k  220 (221)
T d1u9ca_         160 VGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEER  220 (221)
T ss_dssp             HTCGGGSSSCHHHHHHHTTCEECCCSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTT
T ss_pred             cccccchhhhHHHHHHHCCCEEeecCCCCCCEEEECCEEECCChhhHHHHHHHHHHHHhcC
Confidence                          332  2332     455999999999999999999999999998543

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.93  E-value=2.9e-26  Score=213.14  Aligned_cols=168  Identities=26%  Similarity=0.293  Sum_probs=138.7

Q ss_pred             CcEEEEEeCC----------CCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccC-------------CceeeeCCCcC
Q 012037           84 PKKVLVPVGF----------GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASS-------------GTRLVADTSIS  140 (472)
Q Consensus        84 ~~kV~ill~~----------g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~-------------G~~v~~d~~~~  140 (472)
                      .|||+|++.+          |++..|+..|+++|+++||+|+++|+.+| .+....             ...+..+..++
T Consensus         2 ~KkvLiv~s~~~~~~~~~~tG~~~~E~~~P~~~l~~aG~~V~~aS~~gg-~~~~d~~~~~~~~~~~~~~~~~l~~~~~l~   80 (221)
T d1u9ca_           2 SKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGG-EVPLDPRSINEKDPSWAEAEAALKHTARLS   80 (221)
T ss_dssp             CCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCB-CCCBCGGGSSSCCGGGHHHHHHTTSBEECC
T ss_pred             CceEEEEecCchhccCCCcccccHHHHHHHHHHHHHCCCEEEEEecCCC-cceeccCccccccchhHHHHHHhhCCCChh
Confidence            5799999975          88999999999999999999999999987 433211             11244555677


Q ss_pred             CCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC------CCCCCceeecCcchhcc-
Q 012037          141 NCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW------GLLRRKQITCHPAFTDK-  213 (472)
Q Consensus       141 ~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a------GlL~g~~~T~~~~~~~~-  213 (472)
                      ++...+||+|+||||+++...+..++.+.++++++++++|+|++||+|++ +|..+      +|++||++|+|+...+. 
T Consensus        81 ~v~~~dYd~v~iPGG~g~~~~l~~~~~l~~li~~~~~~~k~iaAIChgp~-~l~~a~~~~g~~ll~Gk~~T~~p~~~e~~  159 (221)
T d1u9ca_          81 KDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPS-GLVNATYKDGTPIVKGKTVTSFTDEEERE  159 (221)
T ss_dssp             GGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGG-GGTTCBCTTSCBTTTTCEECCSCHHHHHH
T ss_pred             HCCHhHCCEEEeCCCCchhhcchhhHHHHHHHHHHHhccCcceeecccce-eeeccccCCCCceeCCceeeccCCHHHhh
Confidence            77788999999999987778899999999999999999999999999877 56664      48999999999875443 


Q ss_pred             --------------CCC--Ccccc-----CcEEEeCCEEeCCCCCChHHHHHHHHHHHhCc
Q 012037          214 --------------LPT--FWAVK-----SNIHVSGEVTTSRGPGTSFEFALCLVEQLFGE  253 (472)
Q Consensus       214 --------------l~~--~~~~~-----~~~v~Dg~iiTa~g~~~~~dlal~li~~~~g~  253 (472)
                                    +++  ++|.+     ..+|+|||+||++++.++.+|++.+|+.+..+
T Consensus       160 ~~~~~~~p~~~~~~l~~~Ga~y~~~~~~~~~Vv~Dg~lITg~~p~sa~~fa~~~v~~L~~k  220 (221)
T d1u9ca_         160 VGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEER  220 (221)
T ss_dssp             HTCGGGSSSCHHHHHHHTTCEECCCSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTT
T ss_pred             cccccchhhhHHHHHHHCCCEEeecCCCCCCEEEECCEEECCChhhHHHHHHHHHHHHhcC
Confidence                          222  34443     34999999999999999999999999998654

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=4.4e-25  Score=206.50  Aligned_cols=166  Identities=16%  Similarity=0.212  Sum_probs=138.3

Q ss_pred             CCEEEEEeCC------------CCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCC----------------------
Q 012037          287 MPRVLIPIAN------------GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQ----------------------  332 (472)
Q Consensus       287 ~~~V~il~~~------------g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~----------------------  332 (472)
                      +|||+|++.+            |++..|+..|+++|+++||+|+++|+.|+ ......                      
T Consensus         2 pKkvLiv~t~~~~~~~~~g~~TG~~~~E~~~P~~~l~~aG~~V~iASp~G~-~~~d~~s~~~~~~~~~~~~~~~~~~~~~   80 (236)
T d1qvwa_           2 PKKVLLALTSYNDVFYSDGMKTGVFVVEALHPFNTFRKEGFEVDFVSETGK-FGWDEHSLAKDFLNGQDETDFKNKDSDF   80 (236)
T ss_dssp             CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSSC-CCBCGGGGSTTTSCHHHHHHHHCTTSHH
T ss_pred             CceEEEEEcCCccccCCCCCcCcccHHHHHHHHHHHHHCCCeEEEECCCCC-CCCCcccccccccccHHHHHHhhhhHHH
Confidence            4788888864            89999999999999999999999999886 321100                      


Q ss_pred             CcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc-------CCCCCce
Q 012037          333 GVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH-------GLLKAKK  405 (472)
Q Consensus       333 G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a-------GlL~g~~  405 (472)
                      +-.+..+..+++++.++||+|++|||++....+..++.+.++|++++++|++|++||+|+.+|+.+       +|++||+
T Consensus        81 ~~~l~~~~~~~~v~~~~ydav~ipGG~g~~~dl~~~~~l~~li~~~~~~gk~vaAIChGp~~L~~~~~~~~g~~ll~Gk~  160 (236)
T d1qvwa_          81 NKTLAKIKTPKEVNADDYQIFMASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAMFDGLTDKKTGRPLIEGKS  160 (236)
T ss_dssp             HHHHHTCBCGGGCCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTTCSBTTTTCE
T ss_pred             HHHHhcccChhhCCHhHCCEEEEeCCccchhcchhhhHHHHHHHHHHhcCCeEEEehhhHHHHHHHhhcccccccccCce
Confidence            123455667888888999999999999777889999999999999999999999999999999776       6999999


Q ss_pred             eccChhhHhh-------------------hhc--cee------cCCcEEECCCEEEcCChhhHHHHHHHHHHHhc
Q 012037          406 ATAHPSVIGK-------------------LTN--EVV------NGTKVVVDGKVITSRGLANVIDFALAIVSKFF  453 (472)
Q Consensus       406 ~T~~~~~~~~-------------------l~~--~~~------~~~~vv~dg~iiTa~g~~~~~d~al~li~~~~  453 (472)
                      +|+++...+.                   +++  ..+      .+..+|+|||+||++++.++.++++++|+.+-
T Consensus       161 vT~f~~~ee~~~~~~~~~~~~~~~~le~~l~~~Ga~~~~~~~~~~~~VVvDg~lITGqnP~Sa~~~a~~~v~~L~  235 (236)
T d1qvwa_         161 ITGFTDVGETIMGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALK  235 (236)
T ss_dssp             ECCSCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHGGG
T ss_pred             eccCCcHHHhhccccccccCCCcccHHHHHHHcCCEEeccCCCCCCCEEEeCCEEeCCChhhHHHHHHHHHHHhc
Confidence            9999765543                   222  222      24569999999999999999999999999863

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=4.4e-25  Score=206.53  Aligned_cols=167  Identities=18%  Similarity=0.234  Sum_probs=136.8

Q ss_pred             CcEEEEEeCC------------CCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceec---c------------------CC
Q 012037           84 PKKVLVPVGF------------GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEA---S------------------SG  130 (472)
Q Consensus        84 ~~kV~ill~~------------g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~---~------------------~G  130 (472)
                      +|||+|++.+            |++..|+..|+++|+++||+|+++|+.++.++-.   .                  .+
T Consensus         2 pKkvLiv~t~~~~~~~~~g~~TG~~~~E~~~P~~~l~~aG~~V~iASp~G~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~   81 (236)
T d1qvwa_           2 PKKVLLALTSYNDVFYSDGMKTGVFVVEALHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFN   81 (236)
T ss_dssp             CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSSCCCBCGGGGSTTTSCHHHHHHHHCTTSHHH
T ss_pred             CceEEEEEcCCccccCCCCCcCcccHHHHHHHHHHHHHCCCeEEEECCCCCCCCCcccccccccccHHHHHHhhhhHHHH
Confidence            6899999965            8889999999999999999999999987632110   0                  01


Q ss_pred             ceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC-------CCCCCce
Q 012037          131 TRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW-------GLLRRKQ  203 (472)
Q Consensus       131 ~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a-------GlL~g~~  203 (472)
                      ..+..+..+++++..+||+|++|||++....+..++.+.++|+++++++|+|++||+|++ +|+.+       +|++||+
T Consensus        82 ~~l~~~~~~~~v~~~~ydav~ipGG~g~~~dl~~~~~l~~li~~~~~~gk~vaAIChGp~-~L~~~~~~~~g~~ll~Gk~  160 (236)
T d1qvwa_          82 KTLAKIKTPKEVNADDYQIFMASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPA-MFDGLTDKKTGRPLIEGKS  160 (236)
T ss_dssp             HHHHTCBCGGGCCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGTTCBCTTTCSBTTTTCE
T ss_pred             HHHhcccChhhCCHhHCCEEEEeCCccchhcchhhhHHHHHHHHHHhcCCeEEEehhhHH-HHHHHhhcccccccccCce
Confidence            235556778888888999999999987778899999999999999999999999999987 45543       5999999


Q ss_pred             eecCcchhccC-------------------CC--Ccccc------CcEEEeCCEEeCCCCCChHHHHHHHHHHHh
Q 012037          204 ITCHPAFTDKL-------------------PT--FWAVK------SNIHVSGEVTTSRGPGTSFEFALCLVEQLF  251 (472)
Q Consensus       204 ~T~~~~~~~~l-------------------~~--~~~~~------~~~v~Dg~iiTa~g~~~~~dlal~li~~~~  251 (472)
                      +|+++...+..                   ++  +.|.+      ..+|+|||+||++++.++.++++.+|+.+.
T Consensus       161 vT~f~~~ee~~~~~~~~~~~~~~~~le~~l~~~Ga~~~~~~~~~~~~VVvDg~lITGqnP~Sa~~~a~~~v~~L~  235 (236)
T d1qvwa_         161 ITGFTDVGETIMGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALK  235 (236)
T ss_dssp             ECCSCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHGGG
T ss_pred             eccCCcHHHhhccccccccCCCcccHHHHHHHcCCEEeccCCCCCCCEEEeCCEEeCCChhhHHHHHHHHHHHhc
Confidence            99998765432                   22  34432      348999999999999999999999999764

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=2.1e-22  Score=191.14  Aligned_cols=167  Identities=20%  Similarity=0.206  Sum_probs=132.7

Q ss_pred             CCCEEEEEeC--------------CCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceec-CCCcE---------------
Q 012037          286 RMPRVLIPIA--------------NGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVA-SQGVK---------------  335 (472)
Q Consensus       286 ~~~~V~il~~--------------~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s-~~G~~---------------  335 (472)
                      ..+||+|++.              .|++..|+..|++.|+++||+|+++|+.|+ ++.- ...+.               
T Consensus        43 g~~kIL~V~s~~~~~~~~~g~~~~TG~~~~E~~~P~~~l~~AG~eVdiASp~G~-~~~~D~~s~~~~d~~~~~~~~~~~~  121 (279)
T d1n57a_          43 GKHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGL-MTKFEYWAMPHKDEKVMPFFEQHKS  121 (279)
T ss_dssp             SSCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHHHHTTCCEEEEESSSC-CCCBCGGGCCTTCTTHHHHHHHHHH
T ss_pred             CCceEEEEEcCccccccCCCccccCccCHHHHHHHHHHHHHCCCEEEEECCCCC-CCCcCccccccccHHHHHHHHhHHH
Confidence            4579999987              589999999999999999999999999998 4421 11110               


Q ss_pred             -Ee-----ecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc----CCCCCce
Q 012037          336 -II-----ADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH----GLLKAKK  405 (472)
Q Consensus       336 -v~-----~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a----GlL~g~~  405 (472)
                       +.     .+...++.+..+||+|++|||++....+..++.+.++|++++++|++|++||+|+..|..+    ++++||+
T Consensus       122 ~~~~~~~L~dv~~~~~~~~dYdav~iPGGhG~~~dL~~~~~l~~ll~~~~~~gk~vaaICHGPa~Ll~a~~g~~l~~Gk~  201 (279)
T d1n57a_         122 LFRNPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYS  201 (279)
T ss_dssp             HHHSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGTTSCCTTTTCE
T ss_pred             HHhCchhhhhhhhcccccccccEEEecCCccchhhhhHHHHHHHHHHHHHHcCCcceeccccchhhhhcccCCcccCCeE
Confidence             00     1111122234689999999999777889999999999999999999999999999999876    6999999


Q ss_pred             eccChhhHhh-------------------hhc--ceec----CCcEEECCCEEEcCChhhHHHHHHHHHHHhc
Q 012037          406 ATAHPSVIGK-------------------LTN--EVVN----GTKVVVDGKVITSRGLANVIDFALAIVSKFF  453 (472)
Q Consensus       406 ~T~~~~~~~~-------------------l~~--~~~~----~~~vv~dg~iiTa~g~~~~~d~al~li~~~~  453 (472)
                      +|+++...+.                   +++  ..+.    +..+|+|||+||++++.++.+++..+++++.
T Consensus       202 vT~f~~~eE~~~~~~~~~p~~~~~~le~~L~~~Ga~~~~~~~~~~Vv~D~~LITGqnP~Sa~~~a~~~v~~Ll  274 (279)
T d1n57a_         202 ICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEML  274 (279)
T ss_dssp             ECCCCGGGGGTTTTTTSSSSCCSSCHHHHHHHTTCEECCSSCSCCEEEETTEEEESSGGGHHHHHHHHHHHHH
T ss_pred             EeecCCHHHhccchhccCcccccccHHHHHHHcCCEEECCCCCCCEEEeCCEEeCCCcccHHHHHHHHHHHHH
Confidence            9999765443                   332  2233    3358999999999999999999999999876

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

Probab=99.87  E-value=2.9e-22  Score=176.01  Aligned_cols=118  Identities=14%  Similarity=0.121  Sum_probs=109.6

Q ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037           82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR  161 (472)
Q Consensus        82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~  161 (472)
                      +++|||+||++|||+..|+..++++|+++|+++.+++++.| ++++.+|..+.+|.++.+.++.+||+|+||||.  ...
T Consensus         1 i~grkVaiLv~dg~~~~e~~~~~~~l~~ag~~v~~v~~~~~-~v~~~~G~~i~~d~t~~~~~~~~yDaliiPGG~--~~~   77 (156)
T d1p80a1           1 VKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMG-EVTADDGTVLPIAATFAGAPSLTVDAVIVPCGN--IAD   77 (156)
T ss_dssp             CTTCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSS-EEECTTSCEEECCEETTTSCGGGCSEEEECCSC--THH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecccc-cccccceeEEeeeeeeccCCcccCCEEEeeCCc--hHH
Confidence            36899999999999999999999999999999999999988 999999999999999999999999999999994  345


Q ss_pred             ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCce
Q 012037          162 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ  203 (472)
Q Consensus       162 l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~  203 (472)
                      +..++++++||+++|+|+|+|+++|+|+ ++|+.+|+++++.
T Consensus        78 l~~~~~~~~~i~e~~~~~K~I~aic~g~-~~La~agl~~~~~  118 (156)
T d1p80a1          78 IADNGDANYYLMEAYKHLKPIALAGDAR-KFKATIKIADQGE  118 (156)
T ss_dssp             HHTCHHHHHHHHHHHHTTCCEEEEGGGG-GGGGTTTCCSSCC
T ss_pred             HhcchHHHHHHHHHHHcCCeEEEECchH-HHHHHcCCCcCCC
Confidence            8899999999999999999999999975 5899999998753

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=5.5e-22  Score=188.17  Aligned_cols=169  Identities=18%  Similarity=0.232  Sum_probs=132.0

Q ss_pred             CCcEEEEEeC--------------CCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCce----------------
Q 012037           83 PPKKVLVPVG--------------FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTR----------------  132 (472)
Q Consensus        83 ~~~kV~ill~--------------~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~----------------  132 (472)
                      ..+||+|++.              -|++..|+..|++.|+++||+|++++++++ ++.-.....                
T Consensus        43 g~~kIL~V~s~~~~~~~~~g~~~~TG~~~~E~~~P~~~l~~AG~eVdiASp~G~-~~~~D~~s~~~~d~~~~~~~~~~~~  121 (279)
T d1n57a_          43 GKHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGL-MTKFEYWAMPHKDEKVMPFFEQHKS  121 (279)
T ss_dssp             SSCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHHHHTTCCEEEEESSSC-CCCBCGGGCCTTCTTHHHHHHHHHH
T ss_pred             CCceEEEEEcCccccccCCCccccCccCHHHHHHHHHHHHHCCCEEEEECCCCC-CCCcCccccccccHHHHHHHHhHHH
Confidence            3579999996              389999999999999999999999999987 443211000                


Q ss_pred             -ee-----eCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC---CCCCCce
Q 012037          133 -LV-----ADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW---GLLRRKQ  203 (472)
Q Consensus       133 -v~-----~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a---GlL~g~~  203 (472)
                       +.     .+...+.....+||+|++|||++....+..++.+.++|+++++++|+|++||+|++.+|...   ++++||+
T Consensus       122 ~~~~~~~L~dv~~~~~~~~dYdav~iPGGhG~~~dL~~~~~l~~ll~~~~~~gk~vaaICHGPa~Ll~a~~g~~l~~Gk~  201 (279)
T d1n57a_         122 LFRNPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYS  201 (279)
T ss_dssp             HHHSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGTTSCCTTTTCE
T ss_pred             HHhCchhhhhhhhcccccccccEEEecCCccchhhhhHHHHHHHHHHHHHHcCCcceeccccchhhhhcccCCcccCCeE
Confidence             00     11111222335899999999988888899999999999999999999999999998655432   5899999


Q ss_pred             eecCcchhccC-------------------CC--CccccC----cEEEeCCEEeCCCCCChHHHHHHHHHHHhC
Q 012037          204 ITCHPAFTDKL-------------------PT--FWAVKS----NIHVSGEVTTSRGPGTSFEFALCLVEQLFG  252 (472)
Q Consensus       204 ~T~~~~~~~~l-------------------~~--~~~~~~----~~v~Dg~iiTa~g~~~~~dlal~li~~~~g  252 (472)
                      +|+++...+..                   ++  +.+.+.    .+|+|||+||++++.++.+++..+++++..
T Consensus       202 vT~f~~~eE~~~~~~~~~p~~~~~~le~~L~~~Ga~~~~~~~~~~Vv~D~~LITGqnP~Sa~~~a~~~v~~Ll~  275 (279)
T d1n57a_         202 ICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLA  275 (279)
T ss_dssp             ECCCCGGGGGTTTTTTSSSSCCSSCHHHHHHHTTCEECCSSCSCCEEEETTEEEESSGGGHHHHHHHHHHHHHH
T ss_pred             EeecCCHHHhccchhccCcccccccHHHHHHHcCCEEECCCCCCCEEEeCCEEeCCCcccHHHHHHHHHHHHHH
Confidence            99998765542                   12  334433    389999999999999999999999998764

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=2.2e-22  Score=185.37  Aligned_cols=149  Identities=21%  Similarity=0.237  Sum_probs=116.9

Q ss_pred             CcEEEEEeC-----CCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceec-----------cC-------CceeeeCCCcC
Q 012037           84 PKKVLVPVG-----FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEA-----------SS-------GTRLVADTSIS  140 (472)
Q Consensus        84 ~~kV~ill~-----~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~-----------~~-------G~~v~~d~~~~  140 (472)
                      ||||+|++.     ||++..|+..+++.|+++|++|++++++++ .+..           +.       ++....+.+++
T Consensus         1 MkKvaviLsg~g~~DG~E~~E~~~~~~~L~raG~~v~~~sp~~~-~~~~~~h~~~~~~~~~r~~~~~~~~i~~~~~~~l~   79 (217)
T d1vhqa_           1 MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQ-QVDVINHLTGEAMTETRNVLIEAARITRGEIRPLA   79 (217)
T ss_dssp             CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSB-CSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGG
T ss_pred             CCEEEEEecCCCCCCchhHHHHHHHHHHHHHCCCEEEEEecCCC-ccceeccCCCcccccccceeeeeeeeeccccCChH
Confidence            789999975     899999999999999999999999999875 3321           11       11122345688


Q ss_pred             CCCCCcccEEEEcCCcccccccc----------CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceee-cCcc
Q 012037          141 NCSHQVFDLIALPGGMPGSVRLR----------DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQIT-CHPA  209 (472)
Q Consensus       141 ~~~~~~~D~vivpGG~~~~~~l~----------~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T-~~~~  209 (472)
                      +++..+||+|+||||+++...+.          .++.+.++++++++++|+|++||+|++ +|+.++.+++++.+ .|+.
T Consensus        80 ~v~~~~yDaliiPGG~g~~~~l~~~~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~gp~-~l~~~~~~~~~~~~~~~~~  158 (217)
T d1vhqa_          80 QADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPA-MLPKIFDFPLRLTIGTDID  158 (217)
T ss_dssp             GCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGG-GHHHHCSSCCEECCCSCHH
T ss_pred             HCCHhHCCEEEecCCcccHHHHhhhhccccccccCHHHHHHHHHHHHcCCCEEEEChhHH-HHHHHhccCCCeeeccChh
Confidence            88888999999999986665554          358999999999999999999999887 79988888877554 5666


Q ss_pred             hhccCCC--Ccccc---CcEEEe--CCEEeCC
Q 012037          210 FTDKLPT--FWAVK---SNIHVS--GEVTTSR  234 (472)
Q Consensus       210 ~~~~l~~--~~~~~---~~~v~D--g~iiTa~  234 (472)
                      ..+.+++  +++++   ..+|+|  ||+||+.
T Consensus       159 ~~~~l~~~Ga~~v~~~~~~~vVD~dg~ivTsp  190 (217)
T d1vhqa_         159 TAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTP  190 (217)
T ss_dssp             HHHHHHHTTCEECCCCTTCCEEETTTTEEEEC
T ss_pred             hHHHHHHcCCcEEeccCCeEEEecCCCEEccc
Confidence            7777766  56655   234555  9999974

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=2.1e-21  Score=178.82  Aligned_cols=149  Identities=23%  Similarity=0.300  Sum_probs=116.6

Q ss_pred             CCEEEEEe-----CCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceec-----------CCC-------cEEeecCCcc
Q 012037          287 MPRVLIPI-----ANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVA-----------SQG-------VKIIADKSIS  343 (472)
Q Consensus       287 ~~~V~il~-----~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s-----------~~G-------~~v~~d~~l~  343 (472)
                      |+||+|++     +||+++.|+..+++.|+++|++++++|++++ .+..           +.+       +....+.+++
T Consensus         1 MkKvaviLsg~g~~DG~E~~E~~~~~~~L~raG~~v~~~sp~~~-~~~~~~h~~~~~~~~~r~~~~~~~~i~~~~~~~l~   79 (217)
T d1vhqa_           1 MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQ-QVDVINHLTGEAMTETRNVLIEAARITRGEIRPLA   79 (217)
T ss_dssp             CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSB-CSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGG
T ss_pred             CCEEEEEecCCCCCCchhHHHHHHHHHHHHHCCCEEEEEecCCC-ccceeccCCCcccccccceeeeeeeeeccccCChH
Confidence            78999996     5999999999999999999999999999876 3221           111       1122334688


Q ss_pred             ccCCCcccEEEEcCCCcchhccc----------ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceecc-Chhh
Q 012037          344 DAAESVYDLIILPGGVAGAERLQ----------KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATA-HPSV  412 (472)
Q Consensus       344 ~~~~~~~D~livpGG~~~~~~~~----------~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~-~~~~  412 (472)
                      +++.++||+|++|||++....+.          .++.+++++++|+++||+|++||+|+++|++++.+++++.++ |+..
T Consensus        80 ~v~~~~yDaliiPGG~g~~~~l~~~~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~gp~~l~~~~~~~~~~~~~~~~~~  159 (217)
T d1vhqa_          80 QADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDT  159 (217)
T ss_dssp             GCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCSSCCEECCCSCHHH
T ss_pred             HCCHhHCCEEEecCCcccHHHHhhhhccccccccCHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhccCCCeeeccChhh
Confidence            88889999999999986555553          358999999999999999999999999999999988886554 5666


Q ss_pred             Hhhhhc--ceecC----CcEEE-CCCEEEcC
Q 012037          413 IGKLTN--EVVNG----TKVVV-DGKVITSR  436 (472)
Q Consensus       413 ~~~l~~--~~~~~----~~vv~-dg~iiTa~  436 (472)
                      .+.+++  ..+.+    +.+|+ ||||||+.
T Consensus       160 ~~~l~~~Ga~~v~~~~~~~vVD~dg~ivTsp  190 (217)
T d1vhqa_         160 AEVLEEMGAEHVPCPVDDIVVDEDNKIVTTP  190 (217)
T ss_dssp             HHHHHHTTCEECCCCTTCCEEETTTTEEEEC
T ss_pred             HHHHHHcCCcEEeccCCeEEEecCCCEEccc
Confidence            777775  23322    33443 59999984

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

Probab=99.84  E-value=4.9e-21  Score=168.07  Aligned_cols=117  Identities=12%  Similarity=0.122  Sum_probs=110.1

Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037          286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  365 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~  365 (472)
                      +.+||+|+++|||+..|+..+++.|+++|+++.+++++.+ ++++..|..+.++.++++.+..+||+|+||||..  ..+
T Consensus         2 ~grkVaiLv~dg~~~~e~~~~~~~l~~ag~~v~~v~~~~~-~v~~~~G~~i~~d~t~~~~~~~~yDaliiPGG~~--~~l   78 (156)
T d1p80a1           2 KGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMG-EVTADDGTVLPIAATFAGAPSLTVDAVIVPCGNI--ADI   78 (156)
T ss_dssp             TTCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSS-EEECTTSCEEECCEETTTSCGGGCSEEEECCSCT--HHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecccc-cccccceeEEeeeeeeccCCcccCCEEEeeCCch--HHH
Confidence            3589999999999999999999999999999999999998 9999999999999999999878999999999963  457


Q ss_pred             cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCce
Q 012037          366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKK  405 (472)
Q Consensus       366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~  405 (472)
                      ..++.+++||+++++++|+|+++|+|+++|+.+|++++++
T Consensus        79 ~~~~~~~~~i~e~~~~~K~I~aic~g~~~La~agl~~~~~  118 (156)
T d1p80a1          79 ADNGDANYYLMEAYKHLKPIALAGDARKFKATIKIADQGE  118 (156)
T ss_dssp             HTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGTTTCCSSCC
T ss_pred             hcchHHHHHHHHHHHcCCeEEEECchHHHHHHcCCCcCCC
Confidence            7899999999999999999999999999999999999865

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.17  E-value=9.4e-07  Score=78.93  Aligned_cols=89  Identities=22%  Similarity=0.281  Sum_probs=67.1

Q ss_pred             cCCCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch-
Q 012037          284 FDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA-  362 (472)
Q Consensus       284 ~~~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~-  362 (472)
                      +..+|||+|+.++|- .   ......|++.|+++.++..                   .+++  .++|.||+|||.... 
T Consensus         3 ~~~~mkIgii~~~Gn-~---~s~~~al~~~G~~~~~v~~-------------------~~~l--~~~D~lIlPGG~~~~~   57 (202)
T d1q7ra_           3 FQSNMKIGVLGLQGA-V---REHVRAIEACGAEAVIVKK-------------------SEQL--EGLDGLVLPGGESTTM   57 (202)
T ss_dssp             CCCCCEEEEESCGGG-C---HHHHHHHHHTTCEEEEECS-------------------GGGG--TTCSEEEECCCCHHHH
T ss_pred             cccCCEEEEEECCCC-H---HHHHHHHHHCCCcEEEECC-------------------HHHH--hcCCEEEECCCCcHHH
Confidence            356799999999873 3   3446889999999887731                   1234  679999999986321 


Q ss_pred             hcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHH
Q 012037          363 ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK  397 (472)
Q Consensus       363 ~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~  397 (472)
                      ........+.++|+++.++|+++.+||.|..+|++
T Consensus        58 ~~~l~~~~l~~~I~~~~~~gkPiLGIClG~Qll~~   92 (202)
T d1q7ra_          58 RRLIDRYGLMEPLKQFAAAGKPMFGTCAGLILLAK   92 (202)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCEEEETTHHHHHEE
T ss_pred             HHHhhhhHHHHHHhhhccccceeeeeehhhHHhhh
Confidence            11223456789999999999999999999999985

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

Probab=98.07  E-value=2.3e-06  Score=75.85  Aligned_cols=87  Identities=22%  Similarity=0.270  Sum_probs=65.5

Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch-hcc
Q 012037          287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA-ERL  365 (472)
Q Consensus       287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~-~~~  365 (472)
                      |+||+|+-++|-. .|   .+..|+++|++++++..                   .+++  +++|.||+|||.... ...
T Consensus         1 m~~igv~~~~G~~-~~---~~~al~~~G~~~~~i~~-------------------~~~l--~~~D~lIlPGG~~~~~~~~   55 (195)
T d2nv0a1           1 MLTIGVLGLQGAV-RE---HIHAIEACGAAGLVVKR-------------------PEQL--NEVDGLILPGGESTTMRRL   55 (195)
T ss_dssp             CCEEEEECSSSCC-HH---HHHHHHHTTCEEEEECS-------------------GGGG--GGCSEEEECCSCHHHHHHH
T ss_pred             CcEEEEEecCChH-HH---HHHHHHHCCCcEEEECC-------------------HHHH--hhCCEEEECCCCccHHHHH
Confidence            7899999998733 33   36789999999887732                   1234  568999999985321 122


Q ss_pred             cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      .....+.++|+++.++++++.+||.|..+|++.
T Consensus        56 ~~~~~~~~~I~~~~~~g~pilGIC~G~Qll~~~   88 (195)
T d2nv0a1          56 IDTYQFMEPLREFAAQGKPMFGTCAGLIILAKE   88 (195)
T ss_dssp             HHHTTCHHHHHHHHHTTCCEEEETHHHHHHSBC
T ss_pred             hhhchhcchhhhhhhhcceeeeccccHHHHHhh
Confidence            234456789999999999999999999999874

>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein TM1158
species: Thermotoga maritima [TaxId: 2336]

Probab=98.07  E-value=6e-06  Score=75.05  Aligned_cols=96  Identities=21%  Similarity=0.216  Sum_probs=71.3

Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc-
Q 012037          286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER-  364 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~-  364 (472)
                      +.|||+|+-...++  +...+.++|+..|++++++-...+             +...+++  ++||.+||+||+.+... 
T Consensus         2 ~~mrvli~qh~~~e--~~G~~~~~l~~~g~~~~~~~~~~~-------------~~~p~~l--~~~d~iii~Ggp~~~~d~   64 (230)
T d1o1ya_           2 HHVRVLAIRHVEIE--DLGMMEDIFREKNWSFDYLDTPKG-------------EKLERPL--EEYSLVVLLGGYMGAYEE   64 (230)
T ss_dssp             CCCEEEEECSSTTS--SCTHHHHHHHHTTCEEEEECGGGT-------------CCCSSCG--GGCSEEEECCCSCCTTCT
T ss_pred             CceEEEEEECCCCC--CcHHHHHHHHHCCCEEEEEECCCC-------------CcCCcch--hhCCEEEEcCCCcccccc
Confidence            56899888766554  455678999999999998866543             1111233  57999999998744322 


Q ss_pred             --ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          365 --LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       365 --~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                        ..-...+.++|++..+++++|.+||-|..+|+.+
T Consensus        65 ~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a  100 (230)
T d1o1ya_          65 EKYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKV  100 (230)
T ss_dssp             TTCTHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHhcceEEEeecCHHHHHHH
Confidence              1224567899999999999999999999999876

>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: FGAM synthase PurL, amidotransferase domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.01  E-value=1.1e-05  Score=74.40  Aligned_cols=100  Identities=13%  Similarity=0.186  Sum_probs=70.4

Q ss_pred             CCCEEEEEeCCCC-CHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037          286 RMPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER  364 (472)
Q Consensus       286 ~~~~V~il~~~g~-~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~  364 (472)
                      ..+||+|+.++|. ++.|+..   +|+.+|++++.+..+.-               .-...+..+||+|++|||..-.+.
T Consensus         5 ~kpkvaVl~~pGtNcd~e~~~---Af~~aG~~~~~v~~~dl---------------~~~~~~L~~~~~lvipGGFSygD~   66 (262)
T d1t3ta2           5 ARPKVAVLREQGVNSHVEMAA---AFHRAGFDAIDVHMSDL---------------LGGRIGLGNFHALVACGGFSYGDV   66 (262)
T ss_dssp             CCCEEEEEECTTBCCHHHHHH---HHHHTTCEEEEEEHHHH---------------HHTSCCGGGCSEEEECCBCGGGGT
T ss_pred             CCCeEEEEeCCCCCcHHHHHH---HHHHcCCceEEEEeeec---------------ccCcccccccceEEEecccccccc
Confidence            4579999999996 7788764   67789999998866420               001112367999999998632333


Q ss_pred             c----------cccHHHHHHHHHHH-HcCCeEEEEchhHHHHHHcC-CCCC
Q 012037          365 L----------QKSRILKKLLKEQK-VAGRIYGAVCSSPIVLHKHG-LLKA  403 (472)
Q Consensus       365 ~----------~~~~~l~~~L~~~~-~~g~~v~aic~G~~lLA~aG-lL~g  403 (472)
                      +          ..+..+.+.+.+|. +++++|.+||+|..+|.+.| |+.|
T Consensus        67 l~ag~~~a~~~~~~~~~~~~~~~f~~~~~~~iLGICNGfQiL~elg~l~pg  117 (262)
T d1t3ta2          67 LGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPG  117 (262)
T ss_dssp             TSTTHHHHHHHHHSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTT
T ss_pred             ccchhHHHhhhhhhhHHHHHHHHHhhcCCceEEeechHHHHHHHhcccCCC
Confidence            2          22344555666665 46899999999999999986 5544

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

Probab=97.95  E-value=3.8e-06  Score=74.37  Aligned_cols=87  Identities=18%  Similarity=0.112  Sum_probs=63.1

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc-ccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS-VRL  162 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~-~~l  162 (472)
                      |+||+||-++|-.    ...+..|+++|+++.++...                   ++..  ++|.||+|||.... ...
T Consensus         1 m~~igv~~~~G~~----~~~~~al~~~G~~~~~i~~~-------------------~~l~--~~D~lIlPGG~~~~~~~~   55 (195)
T d2nv0a1           1 MLTIGVLGLQGAV----REHIHAIEACGAAGLVVKRP-------------------EQLN--EVDGLILPGGESTTMRRL   55 (195)
T ss_dssp             CCEEEEECSSSCC----HHHHHHHHHTTCEEEEECSG-------------------GGGG--GCSEEEECCSCHHHHHHH
T ss_pred             CcEEEEEecCChH----HHHHHHHHHCCCcEEEECCH-------------------HHHh--hCCEEEECCCCccHHHHH
Confidence            7899999998733    33478899999998887422                   1222  68999999984221 122


Q ss_pred             cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      .....+.++|+++.+++++|.+||.|- .+|++.
T Consensus        56 ~~~~~~~~~I~~~~~~g~pilGIC~G~-Qll~~~   88 (195)
T d2nv0a1          56 IDTYQFMEPLREFAAQGKPMFGTCAGL-IILAKE   88 (195)
T ss_dssp             HHHTTCHHHHHHHHHTTCCEEEETHHH-HHHSBC
T ss_pred             hhhchhcchhhhhhhhcceeeeccccH-HHHHhh
Confidence            233456788999999999999999975 477764

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.92  E-value=4.6e-06  Score=74.23  Aligned_cols=88  Identities=22%  Similarity=0.151  Sum_probs=63.4

Q ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc-cc
Q 012037           83 PPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS-VR  161 (472)
Q Consensus        83 ~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~-~~  161 (472)
                      ..+||+|+.++| +   +...+.+|++.|+++.++...                   ++..  ++|.||+|||.... ..
T Consensus         5 ~~mkIgii~~~G-n---~~s~~~al~~~G~~~~~v~~~-------------------~~l~--~~D~lIlPGG~~~~~~~   59 (202)
T d1q7ra_           5 SNMKIGVLGLQG-A---VREHVRAIEACGAEAVIVKKS-------------------EQLE--GLDGLVLPGGESTTMRR   59 (202)
T ss_dssp             CCCEEEEESCGG-G---CHHHHHHHHHTTCEEEEECSG-------------------GGGT--TCSEEEECCCCHHHHHH
T ss_pred             cCCEEEEEECCC-C---HHHHHHHHHHCCCcEEEECCH-------------------HHHh--cCCEEEECCCCcHHHHH
Confidence            368999998876 2   345578999999998887421                   1223  69999999985221 11


Q ss_pred             ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          162 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       162 l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ......+.++|+++.+.+++|.+||.|-+ +|++.
T Consensus        60 ~l~~~~l~~~I~~~~~~gkPiLGIClG~Q-ll~~~   93 (202)
T d1q7ra_          60 LIDRYGLMEPLKQFAAAGKPMFGTCAGLI-LLAKR   93 (202)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCEEEETTHHH-HHEEE
T ss_pred             HhhhhHHHHHHhhhccccceeeeeehhhH-Hhhhh
Confidence            22335667899999999999999999744 67653

>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: FGAM synthase PurL, amidotransferase domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.62  E-value=0.00013  Score=67.03  Aligned_cols=99  Identities=15%  Similarity=0.116  Sum_probs=66.1

Q ss_pred             CcEEEEEeCCCCc-HHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037           84 PKKVLVPVGFGTE-EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL  162 (472)
Q Consensus        84 ~~kV~ill~~g~~-~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l  162 (472)
                      ..||+||.++|.. +.|.   ..+|+.+|++++.+....  -+        ..     .....+||+|++|||+.--+.+
T Consensus         6 kpkvaVl~~pGtNcd~e~---~~Af~~aG~~~~~v~~~d--l~--------~~-----~~~L~~~~~lvipGGFSygD~l   67 (262)
T d1t3ta2           6 RPKVAVLREQGVNSHVEM---AAAFHRAGFDAIDVHMSD--LL--------GG-----RIGLGNFHALVACGGFSYGDVL   67 (262)
T ss_dssp             CCEEEEEECTTBCCHHHH---HHHHHHTTCEEEEEEHHH--HH--------HT-----SCCGGGCSEEEECCBCGGGGTT
T ss_pred             CCeEEEEeCCCCCcHHHH---HHHHHHcCCceEEEEeee--cc--------cC-----cccccccceEEEeccccccccc
Confidence            4699999999954 3443   468999999999886652  10        00     1123479999999997433333


Q ss_pred             cC----------ChHHHHHHHHHH-hcCCeEEEEchhhHHhhhcCC-CCCC
Q 012037          163 RD----------CEILKKITSKQA-EEKRLYGAICAAPAVTLLPWG-LLRR  201 (472)
Q Consensus       163 ~~----------~~~~~~~l~~~~-~~~k~I~aic~g~~~lLa~aG-lL~g  201 (472)
                      ..          +..+.+.+.+++ +.++.|.+||+|-+ +|.+.| |+.|
T Consensus        68 ~ag~~~a~~~~~~~~~~~~~~~f~~~~~~~iLGICNGfQ-iL~elg~l~pg  117 (262)
T d1t3ta2          68 GAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQ-MMSNLRELIPG  117 (262)
T ss_dssp             STTHHHHHHHHHSHHHHHHHHHHHHSSSCEEEEETHHHH-HHHTTGGGSTT
T ss_pred             cchhHHHhhhhhhhHHHHHHHHHhhcCCceEEeechHHH-HHHHhcccCCC
Confidence            22          334445555555 46899999999755 788885 5554

>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein TM1158
species: Thermotoga maritima [TaxId: 2336]

Probab=97.28  E-value=0.00028  Score=63.64  Aligned_cols=95  Identities=15%  Similarity=0.160  Sum_probs=66.4

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR  163 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~  163 (472)
                      .+||.|+--..++  +...+.+.|++.|++++++-...+..        +.     ++  ..+||++||+||..++..-.
T Consensus         3 ~mrvli~qh~~~e--~~G~~~~~l~~~g~~~~~~~~~~~~~--------~p-----~~--l~~~d~iii~Ggp~~~~d~~   65 (230)
T d1o1ya_           3 HVRVLAIRHVEIE--DLGMMEDIFREKNWSFDYLDTPKGEK--------LE-----RP--LEEYSLVVLLGGYMGAYEEE   65 (230)
T ss_dssp             CCEEEEECSSTTS--SCTHHHHHHHHTTCEEEEECGGGTCC--------CS-----SC--GGGCSEEEECCCSCCTTCTT
T ss_pred             ceEEEEEECCCCC--CcHHHHHHHHHCCCEEEEEECCCCCc--------CC-----cc--hhhCCEEEEcCCCcccccch
Confidence            5788888655544  44567889999999999886654311        11     11  23699999999853432211


Q ss_pred             ---CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          164 ---DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       164 ---~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                         -.....+||++..+++++|.+||-|.. +|+.+
T Consensus        66 ~~~~~~~~~~~i~~~~~~~~PilGIC~G~Q-lla~a  100 (230)
T d1o1ya_          66 KYPFLKYEFQLIEEILKKEIPFLGICLGSQ-MLAKV  100 (230)
T ss_dssp             TCTHHHHHHHHHHHHHHHTCCEEEETHHHH-HHHHH
T ss_pred             hhhhhHHHHHHHHHHHHhcceEEEeecCHH-HHHHH
Confidence               134667899999999999999999866 67665

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.09  E-value=0.00059  Score=59.71  Aligned_cols=88  Identities=17%  Similarity=0.162  Sum_probs=60.2

Q ss_pred             CCEEEEEeCC-CCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037          287 MPRVLIPIAN-GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  365 (472)
Q Consensus       287 ~~~V~il~~~-g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~  365 (472)
                      |+||+|+=+- +|.    -.....|++.|.+++++..                |....++  .+||.||++||...... 
T Consensus         1 m~ki~iiD~g~~~~----~~i~r~l~~lg~~~~i~~~----------------d~~~~~~--~~~dgiIl~Gg~~~~~~-   57 (196)
T d2a9va1           1 MLKIYVVDNGGQWT----HREWRVLRELGVDTKIVPN----------------DIDSSEL--DGLDGLVLSGGAPNIDE-   57 (196)
T ss_dssp             CCBEEEEEESCCTT----CHHHHHHHHTTCBCCEEET----------------TSCGGGG--TTCSEEEEEEECSCGGG-
T ss_pred             CCEEEEEECCCcHH----HHHHHHHHHCCCeEEEEeC----------------CCCHHHH--hcCCcEEEecccccccc-
Confidence            6788887653 332    2456888888888776532                2234555  67999999998643322 


Q ss_pred             cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                       ....+.++++...++++++.+||-|-.+|+.+
T Consensus        58 -~~~~~~~l~~~~~~~~~PilGIC~G~Qll~~~   89 (196)
T d2a9va1          58 -ELDKLGSVGKYIDDHNYPILGICVGAQFIALH   89 (196)
T ss_dssp             -TGGGHHHHHHHHHHCCSCEEEETHHHHHHHHH
T ss_pred             -ccchhhhHHHHHhhcCceEEEeehhhhhhhhc
Confidence             22334455555567899999999999999986

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=97.01  E-value=0.00031  Score=61.68  Aligned_cols=50  Identities=28%  Similarity=0.529  Sum_probs=38.4

Q ss_pred             CcccEEEEcC-CCcc--hhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          348 SVYDLIILPG-GVAG--AERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       348 ~~~D~livpG-G~~~--~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      ..+|.||+|| |..+  ...+ ++..+.+.|+++.+++++|.+||.|..+|++.
T Consensus        41 ~~~D~lIlPG~G~f~~~~~~l-~~~~~~~~i~~~~~~~~PiLGIClG~QlL~~~   93 (200)
T d1k9vf_          41 DLYDLLFIPGVGHFGEGMRRL-RENDLIDFVRKHVEDERYVVGVCLGMQLLFEE   93 (200)
T ss_dssp             CCCSEEEECCCSCHHHHHHHH-HHTTCHHHHHHHHHTTCEEEEETHHHHTTEEE
T ss_pred             hccCeEEEcChHHHHHHHHhh-hcccccccccccccccceEEEEecceeEEeee
Confidence            4689999999 6411  1222 33467889999999999999999999999864

>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Pyridoxine biosynthesis protein 2, Pdx2
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.93  E-value=0.00057  Score=60.61  Aligned_cols=88  Identities=16%  Similarity=0.246  Sum_probs=55.4

Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhCCC-eEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh---
Q 012037          288 PRVLIPIANGSEEIEIVTIVDILRRAKV-DVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE---  363 (472)
Q Consensus       288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~-~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~---  363 (472)
                      +||+|+.++|-. .|   ...+|+++++ .+++.-.                 ...+++  .++|.||||||.....   
T Consensus         3 ikIGvl~l~G~~-~~---~~~al~~lg~~~~~v~~~-----------------~~~~~l--~~~D~lIlPGgg~~~~~~~   59 (218)
T d2abwa1           3 ITIGVLSLQGDF-EP---HINHFIKLQIPSLNIIQV-----------------RNVHDL--GLCDGLVIPGGESTTVRRC   59 (218)
T ss_dssp             EEEEEECTTSCC-HH---HHHHHHTTCCTTEEEEEE-----------------CSHHHH--HTCSEEEECCSCHHHHHHH
T ss_pred             CEEEEEeCCCcH-HH---HHHHHHHcCCCceEEEEe-----------------CCHHHH--hhCCEEEEcCCCccHHHHH
Confidence            689999998655 22   2466888774 2222211                 123455  6789999999742111   


Q ss_pred             cccccHHHHHHHHHH-HHcCCeEEEEchhHHHHHHc
Q 012037          364 RLQKSRILKKLLKEQ-KVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       364 ~~~~~~~l~~~L~~~-~~~g~~v~aic~G~~lLA~a  398 (472)
                      .+.....+.+.|.++ ..++++|.+||.|..+|++.
T Consensus        60 ~~~~~~~~~~~i~~~~~~~gkPilGIC~G~QlL~~~   95 (218)
T d2abwa1          60 CAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKN   95 (218)
T ss_dssp             TTHHHHHHHHHHHHHHHTSCCCEEEETHHHHHTEEE
T ss_pred             HHHHhccchHHHHHHHHHcCCeEEEecHHHHHHHHh
Confidence            122233444545554 45799999999999999764

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.70  E-value=0.0038  Score=55.75  Aligned_cols=123  Identities=14%  Similarity=0.062  Sum_probs=79.0

Q ss_pred             CchhHHhhhhccccccCCcc-hhhhcccccccccCCCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceec
Q 012037          252 GESVAKEIGELLLMHNADNS-LKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVA  330 (472)
Q Consensus       252 g~~~a~~va~~l~~~~~~~~-~~~~~~n~~~~~~~~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s  330 (472)
                      |.+++++|+-.=-|.+.... +................||+|+=| |..-.    .+..|++.|+.++++..+-      
T Consensus         3 ~~~l~~~Vstk~~y~w~~~~~~~~~~~~~~~~~~~~~~~i~~~D~-G~k~~----ilr~l~~~~~~~~v~p~~~------   71 (228)
T d1a9xb2           3 GMDLAKEVTTAEAYSWTQGSWTLTGGLPQAKKEDELPFHVVAYDF-GAKRN----ILRMLVDRGCRLTIVPAQT------   71 (228)
T ss_dssp             TCBCHHHHSCSSCEEECCCCCBTTTBSCCCCCGGGCCEEEEEEES-SCCHH----HHHHHHHTTEEEEEEETTC------
T ss_pred             CCcccccccCCCCEEcCCCccccccCccccccCCCCcceEEEEeC-CCcHH----hHhHHHhcCceEEEcCCCC------
Confidence            55667777644333332221 112222222222223356666633 55533    3488899999998876653      


Q ss_pred             CCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          331 SQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       331 ~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                                +++++...++|.||+.||++.+.   .....++.++++.+.+.+|.+||-|-.+|+.+
T Consensus        72 ----------~~~~i~~~~pdgivlS~GPg~P~---~~~~~~~~~~~~~~~~iPILGIClG~Qlia~~  126 (228)
T d1a9xb2          72 ----------SAEDVLKMNPDGIFLSNGPGDPA---PCDYAITAIQKFLETDIPVFGICLGHQLLALA  126 (228)
T ss_dssp             ----------CHHHHHTTCCSEEEECCCSBCST---TCHHHHHHHHHHTTSCCCEEEETHHHHHHHHH
T ss_pred             ----------CHHHHHhcCCCEEEEeCCCCccc---cchhHHHHHHHHHhCCCCEEEEEcChHHHHHH
Confidence                      45566556799999999985433   44567888998888899999999999999865

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=96.61  E-value=0.0014  Score=57.27  Aligned_cols=90  Identities=24%  Similarity=0.317  Sum_probs=53.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcC-Cccc--ccc
Q 012037           85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPG-GMPG--SVR  161 (472)
Q Consensus        85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpG-G~~~--~~~  161 (472)
                      |||+|+=+......+   +...|++.|..+..+...            +.  .. .+.  ..+|.||+|| |..+  ...
T Consensus         1 MKI~IiDyg~gN~~s---i~~al~~~g~~~~~~~~~------------~~--~~-~~~--~~~D~lIlPG~G~f~~~~~~   60 (200)
T d1k9vf_           1 MRIGIISVGPGNIMN---LYRGVKRASENFEDVSIE------------LV--ES-PRN--DLYDLLFIPGVGHFGEGMRR   60 (200)
T ss_dssp             CEEEEECSSSSCCHH---HHHHHHHHTTTSSSCEEE------------EE--SS-SCS--CCCSEEEECCCSCHHHHHHH
T ss_pred             CEEEEEeCCCcHHHH---HHHHHHHhccccccceEE------------Ee--CC-hHh--hccCeEEEcChHHHHHHHHh
Confidence            589998555444334   456666665432211110            00  00 112  2689999999 5211  122


Q ss_pred             ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          162 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       162 l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      + .+..+.+.|+++.+++++|.+||.|-+ +|+..
T Consensus        61 l-~~~~~~~~i~~~~~~~~PiLGIClG~Q-lL~~~   93 (200)
T d1k9vf_          61 L-RENDLIDFVRKHVEDERYVVGVCLGMQ-LLFEE   93 (200)
T ss_dssp             H-HHTTCHHHHHHHHHTTCEEEEETHHHH-TTEEE
T ss_pred             h-hcccccccccccccccceEEEEeccee-EEeee
Confidence            3 234577899999999999999999754 67754

>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Pyridoxine biosynthesis protein 2, Pdx2
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.43  E-value=0.0017  Score=57.42  Aligned_cols=89  Identities=13%  Similarity=0.088  Sum_probs=51.9

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCE-EEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc---
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQ-VTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS---  159 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~-v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~---  159 (472)
                      .+||+||.++|-.    .....+|++.|+. +++.-.+                 ..++..  ++|.||||||....   
T Consensus         2 ~ikIGvl~l~G~~----~~~~~al~~lg~~~~~v~~~~-----------------~~~~l~--~~D~lIlPGgg~~~~~~   58 (218)
T d2abwa1           2 EITIGVLSLQGDF----EPHINHFIKLQIPSLNIIQVR-----------------NVHDLG--LCDGLVIPGGESTTVRR   58 (218)
T ss_dssp             CEEEEEECTTSCC----HHHHHHHHTTCCTTEEEEEEC-----------------SHHHHH--TCSEEEECCSCHHHHHH
T ss_pred             CCEEEEEeCCCcH----HHHHHHHHHcCCCceEEEEeC-----------------CHHHHh--hCCEEEEcCCCccHHHH
Confidence            4799999886643    3335778888742 2221111                 112233  68999999973211   


Q ss_pred             ccccCChHHHHHHHHHH-hcCCeEEEEchhhHHhhhcC
Q 012037          160 VRLRDCEILKKITSKQA-EEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       160 ~~l~~~~~~~~~l~~~~-~~~k~I~aic~g~~~lLa~a  196 (472)
                      ..+.....+.+.+.+++ +.+++|.+||.|-+ +|++.
T Consensus        59 ~~~~~~~~~~~~i~~~~~~~gkPilGIC~G~Q-lL~~~   95 (218)
T d2abwa1          59 CCAYENDTLYNALVHFIHVLKKPIWGTCAGCI-LLSKN   95 (218)
T ss_dssp             HTTHHHHHHHHHHHHHHHTSCCCEEEETHHHH-HTEEE
T ss_pred             HHHHHhccchHHHHHHHHHcCCeEEEecHHHH-HHHHh
Confidence            11222233444455444 57999999999755 67664

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.86  E-value=0.0086  Score=51.89  Aligned_cols=88  Identities=17%  Similarity=0.141  Sum_probs=56.1

Q ss_pred             CcEEEEEeCC-CCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037           84 PKKVLVPVGF-GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL  162 (472)
Q Consensus        84 ~~kV~ill~~-g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l  162 (472)
                      |+||+|+=+- +|.    ......|++.|.+++++..+                .+..+..  .||.||++||..+... 
T Consensus         1 m~ki~iiD~g~~~~----~~i~r~l~~lg~~~~i~~~d----------------~~~~~~~--~~dgiIl~Gg~~~~~~-   57 (196)
T d2a9va1           1 MLKIYVVDNGGQWT----HREWRVLRELGVDTKIVPND----------------IDSSELD--GLDGLVLSGGAPNIDE-   57 (196)
T ss_dssp             CCBEEEEEESCCTT----CHHHHHHHHTTCBCCEEETT----------------SCGGGGT--TCSEEEEEEECSCGGG-
T ss_pred             CCEEEEEECCCcHH----HHHHHHHHHCCCeEEEEeCC----------------CCHHHHh--cCCcEEEecccccccc-
Confidence            6788886543 232    24467888888887776432                1222333  6999999998433322 


Q ss_pred             cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                       .......+++...+.+++|.+||-|-+ +|+.+
T Consensus        58 -~~~~~~~l~~~~~~~~~PilGIC~G~Q-ll~~~   89 (196)
T d2a9va1          58 -ELDKLGSVGKYIDDHNYPILGICVGAQ-FIALH   89 (196)
T ss_dssp             -TGGGHHHHHHHHHHCCSCEEEETHHHH-HHHHH
T ss_pred             -ccchhhhHHHHHhhcCceEEEeehhhh-hhhhc
Confidence             223345555555678999999999765 67765

>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: HTS-like
domain: Homoserine O-succinyltransferase HTS (MetA)
species: Bacillus cereus [TaxId: 1396]

Probab=95.84  E-value=0.01  Score=54.43  Aligned_cols=112  Identities=16%  Similarity=0.158  Sum_probs=64.7

Q ss_pred             CCCEEEEEeC-CCCCHHHHHHHHHHHHhCC--CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch
Q 012037          286 RMPRVLIPIA-NGSEEIEIVTIVDILRRAK--VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA  362 (472)
Q Consensus       286 ~~~~V~il~~-~g~~~~e~~~~~d~l~~a~--~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~  362 (472)
                      +++||+|+=. |.-...|. .+...|....  ++++++....-....+....--.--..++++....||.+||-|+..+.
T Consensus        18 rpL~I~iLNlMP~k~~TE~-qf~rll~~~~~qv~~~~~~~~~~~~~~~~~~~~~~~y~~~~~i~~~~fDglIITGap~~~   96 (281)
T d2ghra1          18 RALKIAILNLMPTKQETEA-QLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPVET   96 (281)
T ss_dssp             CCEEEEEECCCSSHHHHHH-HHHHHTTSSSSCEEEEEECCCC------------CCEECHHHHTTCCEEEEEECCCSCTT
T ss_pred             ceeEEEEEecCCcchhhHH-HHHHHhcCCcceEEEEEeeecccccCCccHHHHHhcchhHHHhhcccCCEEEEeCCCCCc
Confidence            4578999832 22233333 1334443333  566666665431111111111111235777767889999999987433


Q ss_pred             hccc---ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          363 ERLQ---KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       363 ~~~~---~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      ..+.   -=+++.++++...+.++.+.+||-|..+++.+
T Consensus        97 ~~fedv~y~~eL~eii~~a~~~~~~~lgiCwGaQa~~~~  135 (281)
T d2ghra1          97 LSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYH  135 (281)
T ss_dssp             SCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHH
T ss_pred             ccccccccHHHHHHHHHHHHhcCCCeEEEcHHHHHHHHH
Confidence            2221   23688889998889999999999999877643

>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.75  E-value=0.013  Score=50.12  Aligned_cols=74  Identities=16%  Similarity=0.161  Sum_probs=55.6

Q ss_pred             HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCe
Q 012037          305 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI  384 (472)
Q Consensus       305 ~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~  384 (472)
                      .++..|++.|++++++..+.                .++++..-.+|.|+++||...    ..+.....++++..+.+++
T Consensus        15 ~i~~~L~~~G~~~~v~~~~~----------------~~~~~~~~~~~gvilsgg~~~----~~~~~~~~~i~~~~~~~~P   74 (188)
T d1wl8a1          15 RIWRTLRYLGVETKIIPNTT----------------PLEEIKAMNPKGIIFSGGPSL----ENTGNCEKVLEHYDEFNVP   74 (188)
T ss_dssp             HHHHHHHHTTCEEEEEETTC----------------CHHHHHHTCCSEEEECCCSCT----TCCTTHHHHHHTGGGTCSC
T ss_pred             HHHHHHHHCCCeEEEEeCCC----------------CHHHHhhhccceeeeccCccc----ccccccccccccccccccc
Confidence            35788999999998875432                344544356899999998632    2344567788888889999


Q ss_pred             EEEEchhHHHHHHc
Q 012037          385 YGAVCSSPIVLHKH  398 (472)
Q Consensus       385 v~aic~G~~lLA~a  398 (472)
                      +.+||-|-.+|+.+
T Consensus        75 iLGIClG~Q~l~~~   88 (188)
T d1wl8a1          75 ILGICLGHQLIAKF   88 (188)
T ss_dssp             EEEETHHHHHHHHH
T ss_pred             eeehhhhhhhhhhh
Confidence            99999999999864

>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: HTS-like
domain: Homoserine O-succinyltransferase HTS (MetA)
species: Bacillus cereus [TaxId: 1396]

Probab=95.53  E-value=0.017  Score=52.91  Aligned_cols=115  Identities=15%  Similarity=0.169  Sum_probs=63.0

Q ss_pred             CCCCcEEEEEeC-CCCcHHHHHHHHHHHHhC--CCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcc
Q 012037           81 AVPPKKVLVPVG-FGTEEMEAVIIVDVLRRA--GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMP  157 (472)
Q Consensus        81 ~~~~~kV~ill~-~g~~~~e~~~~~~~l~~a--g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~  157 (472)
                      .++++||+||=. +.-...|. .+...|...  .++++++....-..-.......-.--.+++++....||++||.|+..
T Consensus        16 dirpL~I~iLNlMP~k~~TE~-qf~rll~~~~~qv~~~~~~~~~~~~~~~~~~~~~~~y~~~~~i~~~~fDglIITGap~   94 (281)
T d2ghra1          16 DIRALKIAILNLMPTKQETEA-QLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPV   94 (281)
T ss_dssp             TSCCEEEEEECCCSSHHHHHH-HHHHHTTSSSSCEEEEEECCCC------------CCEECHHHHTTCCEEEEEECCCSC
T ss_pred             CcceeEEEEEecCCcchhhHH-HHHHHhcCCcceEEEEEeeecccccCCccHHHHHhcchhHHHhhcccCCEEEEeCCCC
Confidence            577899999921 12222231 133333333  35666666653211111111101111344455556799999999843


Q ss_pred             ccccccC---ChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          158 GSVRLRD---CEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       158 ~~~~l~~---~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      +.....+   -.++.++++...++++.+.+||=|...++-..
T Consensus        95 ~~~~fedv~y~~eL~eii~~a~~~~~~~lgiCwGaQa~~~~l  136 (281)
T d2ghra1          95 ETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHH  136 (281)
T ss_dssp             TTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHH
T ss_pred             CcccccccccHHHHHHHHHHHHhcCCCeEEEcHHHHHHHHHh
Confidence            3322222   27889999999999999999999866444333

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.52  E-value=0.0063  Score=52.64  Aligned_cols=78  Identities=14%  Similarity=0.043  Sum_probs=54.1

Q ss_pred             HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCe
Q 012037          305 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI  384 (472)
Q Consensus       305 ~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~  384 (472)
                      .+++.|++.|.+++++..+.-               .++++...++|.|++.||...+... .+.....++.+...++++
T Consensus        16 Ni~~~l~~lG~~~~vi~~d~~---------------~~~~i~~~~~~gvilsgGp~~~~~~-~~~~~~~~i~~~~~~~~P   79 (195)
T d1qdlb_          16 NIAQIVGELGSYPIVIRNDEI---------------SIKGIERIDPDRLIISPGPGTPEKR-EDIGVSLDVIKYLGKRTP   79 (195)
T ss_dssp             HHHHHHHHTTCEEEEEETTTS---------------CHHHHHHHCCSEEEECCCSSCTTSH-HHHTTHHHHHHHHTTTSC
T ss_pred             HHHHHHHhCCCeEEEEeCCCC---------------CHHHHHhhCCCccccCCCCCccccc-cccccchhhhhhhcCCCC
Confidence            446789999999988754431               2344432467999999987543321 222344566677788999


Q ss_pred             EEEEchhHHHHHHc
Q 012037          385 YGAVCSSPIVLHKH  398 (472)
Q Consensus       385 v~aic~G~~lLA~a  398 (472)
                      +.+||-|-.+|+.+
T Consensus        80 iLGIClG~Qll~~~   93 (195)
T d1qdlb_          80 ILGVCLGHQAIGYA   93 (195)
T ss_dssp             EEEETHHHHHHHHH
T ss_pred             EEEeehhhhhhhhc
Confidence            99999999999865

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.73  E-value=0.012  Score=50.77  Aligned_cols=78  Identities=9%  Similarity=-0.007  Sum_probs=51.0

Q ss_pred             HHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCe
Q 012037          102 IIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRL  181 (472)
Q Consensus       102 ~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~  181 (472)
                      .+++.|++.|++++++..+.- .              +++...-.+|.|++.||...+... .+.....++.+..+.+++
T Consensus        16 Ni~~~l~~lG~~~~vi~~d~~-~--------------~~~i~~~~~~gvilsgGp~~~~~~-~~~~~~~~i~~~~~~~~P   79 (195)
T d1qdlb_          16 NIAQIVGELGSYPIVIRNDEI-S--------------IKGIERIDPDRLIISPGPGTPEKR-EDIGVSLDVIKYLGKRTP   79 (195)
T ss_dssp             HHHHHHHHTTCEEEEEETTTS-C--------------HHHHHHHCCSEEEECCCSSCTTSH-HHHTTHHHHHHHHTTTSC
T ss_pred             HHHHHHHhCCCeEEEEeCCCC-C--------------HHHHHhhCCCccccCCCCCccccc-cccccchhhhhhhcCCCC
Confidence            457889999999988865421 1              111221257999999984333321 222344567777889999


Q ss_pred             EEEEchhhHHhhhcC
Q 012037          182 YGAICAAPAVTLLPW  196 (472)
Q Consensus       182 I~aic~g~~~lLa~a  196 (472)
                      |.+||-|-+ +|+.+
T Consensus        80 iLGIClG~Q-ll~~~   93 (195)
T d1qdlb_          80 ILGVCLGHQ-AIGYA   93 (195)
T ss_dssp             EEEETHHHH-HHHHH
T ss_pred             EEEeehhhh-hhhhc
Confidence            999999866 56654

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=94.69  E-value=0.024  Score=48.26  Aligned_cols=87  Identities=18%  Similarity=0.158  Sum_probs=59.0

Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh--cc
Q 012037          288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE--RL  365 (472)
Q Consensus       288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~--~~  365 (472)
                      |||+|+=|-.-+.-.   +...|++.|+++.+++.                   .+++  .++|.+|+|||.....  ..
T Consensus         1 Mki~IiD~G~gN~~s---i~~~l~~lg~~~~i~~~-------------------~~~i--~~~d~lIlpG~g~~~~~~~~   56 (195)
T d1ka9h_           1 MKALLIDYGSGNLRS---AAKALEAAGFSVAVAQD-------------------PKAH--EEADLLVLPGQGHFGQVMRA   56 (195)
T ss_dssp             CEEEEECSSCSCHHH---HHHHHHHTTCEEEEESS-------------------TTSC--SSCSEEEECCCSCHHHHHHT
T ss_pred             CEEEEEeCCCcHHHH---HHHHHHHCCCeEEEECC-------------------HHHH--HHHhhhhcCCCccccchhhh
Confidence            577777554334433   66778888988876521                   1233  5689999999752111  12


Q ss_pred             cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                      .....+...+.+....++++.++|.|..+|++.
T Consensus        57 ~~~~~~~~~~~~~~~~g~pilGiClG~qll~~~   89 (195)
T d1ka9h_          57 FQESGFVERVRRHLERGLPFLGICVGMQVLYEG   89 (195)
T ss_dssp             TSSSCTHHHHHHHHHTTCCEEECTHHHHTTSSE
T ss_pred             ccccCCcccccccccccchhhhhhhhhheeeec
Confidence            233345667788888999999999999999854

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

Probab=94.37  E-value=0.015  Score=50.20  Aligned_cols=78  Identities=15%  Similarity=0.111  Sum_probs=53.6

Q ss_pred             HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCe
Q 012037          305 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI  384 (472)
Q Consensus       305 ~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~  384 (472)
                      .+++.|+..|++++++..+..            .+...+++...++|+|++.||++.+...    ....++++..+++++
T Consensus        15 ni~~~l~~lG~~~~v~~~~~~------------~~~~~~~l~~~~~~~iils~Gpg~~~~~----~~~~~i~~~l~~~iP   78 (192)
T d1i7qb_          15 NLVDQLRASGHQVVIYRNQIG------------AEVIIERLQHMEQPVLMLSPGPGTPSEA----GCMPELLQRLRGQLP   78 (192)
T ss_dssp             HHHHHHHHTTCEEEEEETTSC------------HHHHHHHHHHCSSEEEEECCCSSCGGGS----TTHHHHHHHHBTTBC
T ss_pred             HHHHHHHHCCCeEEEEeCCCc------------ccccHHHHHhcCCCeEEecCcccccccc----ccchhhHHhhhcCcc
Confidence            468889999999988865542            0112222322468999998887543322    223456777788999


Q ss_pred             EEEEchhHHHHHHc
Q 012037          385 YGAVCSSPIVLHKH  398 (472)
Q Consensus       385 v~aic~G~~lLA~a  398 (472)
                      +.+||-|-.+|+.+
T Consensus        79 iLGIClG~Q~la~~   92 (192)
T d1i7qb_          79 IIGICLGHQAIVEA   92 (192)
T ss_dssp             EEEETHHHHHHHHH
T ss_pred             EEeeeHHHHHHHHH
Confidence            99999999999975

>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.37  E-value=0.025  Score=48.30  Aligned_cols=74  Identities=15%  Similarity=0.131  Sum_probs=52.4

Q ss_pred             HHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCe
Q 012037          102 IIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRL  181 (472)
Q Consensus       102 ~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~  181 (472)
                      .+...|++.|++++++..+.  .              +++...-.+|.|+++||. +.   ..+.....++++..+.+++
T Consensus        15 ~i~~~L~~~G~~~~v~~~~~--~--------------~~~~~~~~~~gvilsgg~-~~---~~~~~~~~~i~~~~~~~~P   74 (188)
T d1wl8a1          15 RIWRTLRYLGVETKIIPNTT--P--------------LEEIKAMNPKGIIFSGGP-SL---ENTGNCEKVLEHYDEFNVP   74 (188)
T ss_dssp             HHHHHHHHTTCEEEEEETTC--C--------------HHHHHHTCCSEEEECCCS-CT---TCCTTHHHHHHTGGGTCSC
T ss_pred             HHHHHHHHCCCeEEEEeCCC--C--------------HHHHhhhccceeeeccCc-cc---ccccccccccccccccccc
Confidence            46788999999999886442  1              122222258999999883 32   2345677788889999999


Q ss_pred             EEEEchhhHHhhhcC
Q 012037          182 YGAICAAPAVTLLPW  196 (472)
Q Consensus       182 I~aic~g~~~lLa~a  196 (472)
                      +.+||-|-+ +|+.+
T Consensus        75 iLGIClG~Q-~l~~~   88 (188)
T d1wl8a1          75 ILGICLGHQ-LIAKF   88 (188)
T ss_dssp             EEEETHHHH-HHHHH
T ss_pred             eeehhhhhh-hhhhh
Confidence            999999755 56653

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=93.80  E-value=0.12  Score=43.69  Aligned_cols=86  Identities=20%  Similarity=0.097  Sum_probs=55.5

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc---c
Q 012037           85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV---R  161 (472)
Q Consensus        85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~---~  161 (472)
                      |||+|+=+..-.   +..+..+|++.|+++.++...                   ++..  .+|.+++|||. ...   .
T Consensus         1 Mki~IiD~G~gN---~~si~~~l~~lg~~~~i~~~~-------------------~~i~--~~d~lIlpG~g-~~~~~~~   55 (195)
T d1ka9h_           1 MKALLIDYGSGN---LRSAAKALEAAGFSVAVAQDP-------------------KAHE--EADLLVLPGQG-HFGQVMR   55 (195)
T ss_dssp             CEEEEECSSCSC---HHHHHHHHHHTTCEEEEESST-------------------TSCS--SCSEEEECCCS-CHHHHHH
T ss_pred             CEEEEEeCCCcH---HHHHHHHHHHCCCeEEEECCH-------------------HHHH--HHhhhhcCCCc-cccchhh
Confidence            567766333222   334688889999998876321                   1223  68999999973 221   1


Q ss_pred             ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          162 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       162 l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ..........+......++++.++|.| ..+|+..
T Consensus        56 ~~~~~~~~~~~~~~~~~g~pilGiClG-~qll~~~   89 (195)
T d1ka9h_          56 AFQESGFVERVRRHLERGLPFLGICVG-MQVLYEG   89 (195)
T ss_dssp             TTSSSCTHHHHHHHHHTTCCEEECTHH-HHTTSSE
T ss_pred             hccccCCcccccccccccchhhhhhhh-hheeeec
Confidence            223334556788888999999999996 4466643

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

Probab=93.28  E-value=0.021  Score=49.14  Aligned_cols=90  Identities=14%  Similarity=0.096  Sum_probs=55.6

Q ss_pred             EEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHH
Q 012037           89 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL  168 (472)
Q Consensus        89 ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~  168 (472)
                      ||+-|.++-.. ..+++.|++.|+++.++..+....        ...    ++....++|+|++-||.....    +...
T Consensus         3 iliiD~~DSFt-~ni~~~l~~lG~~~~v~~~~~~~~--------~~~----~~l~~~~~~~iils~Gpg~~~----~~~~   65 (192)
T d1i7qb_           3 ILLLDNVDSFT-YNLVDQLRASGHQVVIYRNQIGAE--------VII----ERLQHMEQPVLMLSPGPGTPS----EAGC   65 (192)
T ss_dssp             EEEEECSCSSH-HHHHHHHHHTTCEEEEEETTSCHH--------HHH----HHHHHCSSEEEEECCCSSCGG----GSTT
T ss_pred             EEEEECCCcHH-HHHHHHHHHCCCeEEEEeCCCccc--------ccH----HHHHhcCCCeEEecCcccccc----cccc
Confidence            34545544322 246888999999999987653211        111    111222589999977733222    2223


Q ss_pred             HHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          169 KKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       169 ~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      ..++++..+++++|.+||-|-+ +|+.+
T Consensus        66 ~~~i~~~l~~~iPiLGIClG~Q-~la~~   92 (192)
T d1i7qb_          66 MPELLQRLRGQLPIIGICLGHQ-AIVEA   92 (192)
T ss_dssp             HHHHHHHHBTTBCEEEETHHHH-HHHHH
T ss_pred             chhhHHhhhcCccEEeeeHHHH-HHHHH
Confidence            4567788899999999999866 56654

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.91  E-value=0.18  Score=44.23  Aligned_cols=88  Identities=20%  Similarity=0.181  Sum_probs=61.4

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037           84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR  163 (472)
Q Consensus        84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~  163 (472)
                      ..||+|+=+ |....    .+..|++.|+.++++..+.                +.+++...++|+||+.||.+.+.   
T Consensus        39 ~~~i~~~D~-G~k~~----ilr~l~~~~~~~~v~p~~~----------------~~~~i~~~~pdgivlS~GPg~P~---   94 (228)
T d1a9xb2          39 PFHVVAYDF-GAKRN----ILRMLVDRGCRLTIVPAQT----------------SAEDVLKMNPDGIFLSNGPGDPA---   94 (228)
T ss_dssp             CEEEEEEES-SCCHH----HHHHHHHTTEEEEEEETTC----------------CHHHHHTTCCSEEEECCCSBCST---
T ss_pred             cceEEEEeC-CCcHH----hHhHHHhcCceEEEcCCCC----------------CHHHHHhcCCCEEEEeCCCCccc---
Confidence            456776633 44433    3488899999998887653                12233333699999999943332   


Q ss_pred             CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                      +.....+.+++..+.+.||.+||-|-+ +|+.+
T Consensus        95 ~~~~~~~~~~~~~~~~iPILGIClG~Q-lia~~  126 (228)
T d1a9xb2          95 PCDYAITAIQKFLETDIPVFGICLGHQ-LLALA  126 (228)
T ss_dssp             TCHHHHHHHHHHTTSCCCEEEETHHHH-HHHHH
T ss_pred             cchhHHHHHHHHHhCCCCEEEEEcChH-HHHHH
Confidence            446788899999999999999999866 56654

>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthetase
species: Escherichia coli [TaxId: 562]

Probab=92.38  E-value=0.081  Score=45.60  Aligned_cols=90  Identities=17%  Similarity=0.061  Sum_probs=58.6

Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037          286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  365 (472)
Q Consensus       286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~  365 (472)
                      +.+||+|+=|- ..-.  -.+...|+..|+++++++.+..                .++.....+|.+++.||+..... 
T Consensus         4 ~~~kI~IiD~G-~~~~--~~I~r~lr~lg~~~~I~~~d~~----------------~~~~~~~~~~giils~gp~~~~~-   63 (205)
T d1gpma2           4 HKHRILILDFG-SQYT--QLVARRVRELGVYCELWAWDVT----------------EAQIRDFNPSGIILSGGPESTTE-   63 (205)
T ss_dssp             TSSEEEEEECS-CTTH--HHHHHHHHHTTCEEEEEESCCC----------------HHHHHHHCCSEEEECCCSSCTTS-
T ss_pred             ccCeEEEEECC-chHH--HHHHHHHHHCCCEEEEECCCCC----------------HHHHhhcCCCeEEecCCCCccch-
Confidence            34689888553 2111  2246788999999988765432                22322246899999998743322 


Q ss_pred             cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037          366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  398 (472)
Q Consensus       366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a  398 (472)
                         .....+++...++++++.+||-|-.+|+.+
T Consensus        64 ---~~~~~~~~~~~~~~~PiLGIClG~Qlla~~   93 (205)
T d1gpma2          64 ---ENSPRAPQYVFEAGVPVFGVCYGMQTMAMQ   93 (205)
T ss_dssp             ---TTCCCCCGGGGTSSSCEEEETHHHHHHHHH
T ss_pred             ---hhhhhHHHHHHhCCCCEEEeccchhhhhhh
Confidence               112234455567899999999999999974

>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthetase
species: Escherichia coli [TaxId: 562]

Probab=91.08  E-value=0.063  Score=46.33  Aligned_cols=91  Identities=12%  Similarity=0.047  Sum_probs=56.7

Q ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037           82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR  161 (472)
Q Consensus        82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~  161 (472)
                      +..+||+|+=+-. .-.  ......|++.|++++++..+..  .              ++.....+|.+++.||...+..
T Consensus         3 ~~~~kI~IiD~G~-~~~--~~I~r~lr~lg~~~~I~~~d~~--~--------------~~~~~~~~~giils~gp~~~~~   63 (205)
T d1gpma2           3 IHKHRILILDFGS-QYT--QLVARRVRELGVYCELWAWDVT--E--------------AQIRDFNPSGIILSGGPESTTE   63 (205)
T ss_dssp             TTSSEEEEEECSC-TTH--HHHHHHHHHTTCEEEEEESCCC--H--------------HHHHHHCCSEEEECCCSSCTTS
T ss_pred             CccCeEEEEECCc-hHH--HHHHHHHHHCCCEEEEECCCCC--H--------------HHHhhcCCCeEEecCCCCccch
Confidence            4567999885432 111  2245778899999988865421  1              1111225899999988433221


Q ss_pred             ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037          162 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  196 (472)
Q Consensus       162 l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a  196 (472)
                          .....++++.++.++||.+||-|-+ +|+.+
T Consensus        64 ----~~~~~~~~~~~~~~~PiLGIClG~Q-lla~~   93 (205)
T d1gpma2          64 ----ENSPRAPQYVFEAGVPVFGVCYGMQ-TMAMQ   93 (205)
T ss_dssp             ----TTCCCCCGGGGTSSSCEEEETHHHH-HHHHH
T ss_pred             ----hhhhhHHHHHHhCCCCEEEeccchh-hhhhh
Confidence                1222345566788999999999766 67654

>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.72  E-value=0.16  Score=44.95  Aligned_cols=44  Identities=14%  Similarity=0.155  Sum_probs=35.7

Q ss_pred             CcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHH
Q 012037          348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVL  395 (472)
Q Consensus       348 ~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lL  395 (472)
                      .++|.|+||||.+ .   +.-+.-+..++....++.+..+||-|..+.
T Consensus        57 ~~~dGIlvPGGFG-~---rG~eGki~ai~yARen~iPfLGIClGmQ~a  100 (250)
T d1vcoa1          57 RDVSGILVPGGFG-V---RGIEGKVRAAQYARERKIPYLGICLGLQIA  100 (250)
T ss_dssp             TTCSCEEECCCCS-S---TTHHHHHHHHHHHHHTTCCEEEETHHHHHH
T ss_pred             hcCCeEEecCCCC-c---cchHHHHHHHHHHHHcchhHHHHHHHHHHH
Confidence            6789999999984 2   234566777888899999999999998753

>d1fyea_ c.23.16.4 (A:) Aspartyl dipeptidase PepE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Aspartyl dipeptidase PepE
domain: Aspartyl dipeptidase PepE
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.45  E-value=0.19  Score=44.14  Aligned_cols=93  Identities=13%  Similarity=0.099  Sum_probs=61.1

Q ss_pred             CCCEEEEEeCC---CCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch
Q 012037          286 RMPRVLIPIAN---GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA  362 (472)
Q Consensus       286 ~~~~V~il~~~---g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~  362 (472)
                      ..+||+++-+=   .-...=.-...+.|...+++++.+.....               ..+.+  .+.|+|++.||.  .
T Consensus        30 ~~~~i~~IPtAs~~~~~~~y~~~~~~~~~~l~~~v~~l~~~~~---------------~~~~l--~~ad~I~v~GGn--~   90 (229)
T d1fyea_          30 GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVAD---------------PLAAI--EKAEIIIVGGGN--T   90 (229)
T ss_dssp             TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEEGGGSSC---------------HHHHH--HHCSEEEECCSC--H
T ss_pred             CCCeEEEECCCCCCCchhHHHHHHHHHhhhcCceeEEeccccc---------------HHHHH--hhCCEEEEcCCC--H
Confidence            34678887542   11222234456677778888776533221               22333  567999999996  3


Q ss_pred             hcc---cccHHHHHHHHHHHHcCCeEEEEchhHHHHHH
Q 012037          363 ERL---QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK  397 (472)
Q Consensus       363 ~~~---~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~  397 (472)
                      ..+   .....+.+.|++.+++|.++++..+|+.++..
T Consensus        91 ~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~v~~~  128 (229)
T d1fyea_          91 FQLLKESRERGLLAPMADRVKRGALYIGWSAGANLACP  128 (229)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHHTSS
T ss_pred             HHHHHHHHhCCHHHHHHHHHHcCCeEEEeChhHhhcCc
Confidence            222   23445778999999999999999999998863

>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.38  E-value=0.28  Score=43.62  Aligned_cols=90  Identities=12%  Similarity=0.189  Sum_probs=56.9

Q ss_pred             EEEEEeC-CCCCHHHHHHHHHHHHhCC----CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh
Q 012037          289 RVLIPIA-NGSEEIEIVTIVDILRRAK----VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE  363 (472)
Q Consensus       289 ~V~il~~-~g~~~~e~~~~~d~l~~a~----~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~  363 (472)
                      +|+++-= -...+ .+..+.+.|..|+    .++++.-.+.. .+.         +...+..  .++|.|+||||.+ . 
T Consensus         5 ~Ia~vGKY~~l~D-aY~Sv~eaL~ha~~~~~~~v~i~wi~s~-~~e---------~~~~~~L--~~~dGIlvPGGFG-~-   69 (258)
T d1s1ma1           5 TIGMVGKYIELPD-AYKSVIEALKHGGLKNRVSVNIKLIDSQ-DVE---------TRGVEIL--KGLDAILVPGGFG-Y-   69 (258)
T ss_dssp             EEEEEESSCSSGG-GGHHHHHHHHHHHHHHTEEEEEEEEEHH-HHH---------HHCTTTT--TTCSEEEECCCCS-S-
T ss_pred             EEEEEeCcCCCch-hHHhHHHHHHHhHHhcCCeEEEEEEccc-ccc---------ccccccc--cccccEEeecccC-c-
Confidence            4555532 23222 3456777887764    44444443322 111         1112233  6799999999984 2 


Q ss_pred             cccccHHHHHHHHHHHHcCCeEEEEchhHHHH
Q 012037          364 RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVL  395 (472)
Q Consensus       364 ~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lL  395 (472)
                        +.-+.-+..++...+++.+..+||-|..+.
T Consensus        70 --RG~eGki~ai~yARen~iPfLGIClGmQ~a   99 (258)
T d1s1ma1          70 --RGVEGMITTARFARENNIPYLGICLGMQVA   99 (258)
T ss_dssp             --TTHHHHHHHHHHHHHTTCCEEEETHHHHHH
T ss_pred             --CCHHHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence              345677888999999999999999999764

>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: gamma-glutamyl hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.89  E-value=0.62  Score=42.08  Aligned_cols=50  Identities=16%  Similarity=0.091  Sum_probs=31.3

Q ss_pred             CcccEEEEcCCCcchh---cccccHHHHHHHHHHHHc--CCeEEEEchhHHHHHH
Q 012037          348 SVYDLIILPGGVAGAE---RLQKSRILKKLLKEQKVA--GRIYGAVCSSPIVLHK  397 (472)
Q Consensus       348 ~~~D~livpGG~~~~~---~~~~~~~l~~~L~~~~~~--g~~v~aic~G~~lLA~  397 (472)
                      ...|.|++|||.....   .....+.+.++.......  +.+|.+||-|-.+|+.
T Consensus        58 ~~idGillpGG~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~PilGIC~G~Qll~~  112 (288)
T d1l9xa_          58 KSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSL  112 (288)
T ss_dssp             HHSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHH
T ss_pred             hhcCCeEecCCCCCcccccccccchHHHHHHHHHHHhhCCCCeEEEcHHHHHHHH
Confidence            4569999999953211   111223444544444444  4599999999998864

>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.19  E-value=0.78  Score=40.58  Aligned_cols=90  Identities=19%  Similarity=0.256  Sum_probs=55.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHHHhC----CCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037           86 KVLVPVGFGTEEMEAVIIVDVLRRA----GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR  161 (472)
Q Consensus        86 kV~ill~~g~~~~e~~~~~~~l~~a----g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~  161 (472)
                      +|+++=-----...+..+.+.|..+    +..+++...+.. .+..        + ..+..  .++|.|+||||++ .  
T Consensus         5 ~Ia~vGKY~~l~DaY~Sv~eaL~ha~~~~~~~v~i~wi~s~-~~e~--------~-~~~~L--~~~dGIlvPGGFG-~--   69 (258)
T d1s1ma1           5 TIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQ-DVET--------R-GVEIL--KGLDAILVPGGFG-Y--   69 (258)
T ss_dssp             EEEEEESSCSSGGGGHHHHHHHHHHHHHHTEEEEEEEEEHH-HHHH--------H-CTTTT--TTCSEEEECCCCS-S--
T ss_pred             EEEEEeCcCCCchhHHhHHHHHHHhHHhcCCeEEEEEEccc-cccc--------c-ccccc--cccccEEeecccC-c--
Confidence            4555532212344567788888866    455555554421 2211        1 11222  3799999999963 2  


Q ss_pred             ccCChHHHHHHHHHHhcCCeEEEEchhhHH
Q 012037          162 LRDCEILKKITSKQAEEKRLYGAICAAPAV  191 (472)
Q Consensus       162 l~~~~~~~~~l~~~~~~~k~I~aic~g~~~  191 (472)
                       +.-+--+..++.+.+++.|+.+||-|-+.
T Consensus        70 -RG~eGki~ai~yARen~iPfLGIClGmQ~   98 (258)
T d1s1ma1          70 -RGVEGMITTARFARENNIPYLGICLGMQV   98 (258)
T ss_dssp             -TTHHHHHHHHHHHHHTTCCEEEETHHHHH
T ss_pred             -CCHHHHHHHHHHHHHcCccHHHHHHHHHH
Confidence             24466777888888999999999997553