Citrus Sinensis ID: 012057

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470--
MESIRELLLILLAVILLVQNLSNVEARYHHHKKQKNKGSTVPPPASPENPVSSSPSYSPSVPSDPYPNDPVNSTDCIFDVRDYGAVGDGSADDTAAFRAAWKAACAVEAGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGAHYSQACVSNITVRNAIIRESDNGLRIKTWQGGTGCVSDLSFENIQMENVRNCINIDQYYCLSKECLNQTSAVFVTGITYRNIKGTYDVRTPPIHFACSDTVPCTKITMAEVELLPYEGQLLDDPFCWNAYGTQETLTIPPIDCLQEGEPQSEQEVSAYGC
cHHHHHHHHHHHHHHHHHHHccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccHHHHHHHHHHHHHccccEEEEccccEEEEEEEEEcccccccEEEEEEEEEEccccccccccccccccEEEEEEEEcEEEEEcEEEEcccccccccccccccccccccccccccccEEEEEEccccEEEEcEEEEcccccEEEEEcEEEEEEEEEEEEcccccccccEEEccccccEEEEEEEEEccccEEEEccccEEEEEEEEEEccccccEEEEEccccccccEEEEEEEEEEEEccccEEEEEEcccccEEEEEEEEEEEEEEcccEEEEEEEEcccccccccccccEEEEcEEEEEEEEEEEcccccEEEEccccccEEEEEEEEEEEEEcccccccccEEEEEEEEEccccccccccccccccccccccccccc
cHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEHccccccccccccHHHHHHHHHHHHcccccEEEEccccEEEEEEEEEEccccccEEEEEEEEEEccccHHHccccccccEEEEEEEEcEEEEEEcEEEccccccHcccccccccccccccccccccccccEEEEccEEEEEEEEEEEccccccEEEEccEEEEEEEEEEEccccccccccEEEEccEEEEEEccEEEcccccEEEEccccEEEEEEEEEcccccEEEEEcccccccccEEEEEEEEEEEEcccccEEEEEcccccEEEEEEEEEEEEEEcccccEEEEccccccccccccccEEEEEEEEEEEEccccccccccEEEEcccccccccEEEEEEEEEEccccccccccHHHcccccccccccccHHHcccccccccccccccc
MESIRELLLILLAVILLVQNLSNVEARYHhhkkqknkgstvpppaspenpvssspsyspsvpsdpypndpvnstdcifdvrdygavgdgsadDTAAFRAAWKAACAVEAGvvlapsdyvfkitstifsgpckpglvfqldgvlmppdgpdtwpkadsrkQWLVFYKlddmtftgkgtiegngqpwwdlpckphrgpngstssgpcdspaLIRFFMSSNLvvsgltiqnspqfhmkfdgcegvmidklsisspklspntdgihientksVGIYNSmisngddcisigtgcsdvdiadvtcgpshgisigslgahysQACVSNITVRNAIIREsdnglriktwqggtgcvsdlsFENIQMENVRNCINIDQYYCLSKECLNQTSAVFVTGITyrnikgtydvrtppihfacsdtvpctkitMAEVEllpyegqllddpfcwnaygtqetltippidclqegepqseqevsaygc
MESIRELLLILLAVILLVQNLSNVEARYHHhkkqknkgstvpppASPENPVSSSPSYSPSVPSDPYPNDPVNSTDCIFDVRDYGAVGDGSADDTAAFRAAWKAACAVEAGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGAHYSQACVSNITVRNAIIREsdnglriktwqggtGCVSDLSFENIQMENVRNCINIDQYYCLSKECLNQTSAVFVTGITYRNIKGTYDVRTPPIHFACSDTVPCTKITMAEVELLPYEGQLLDDPFCWNAYGTQETLTIPPIDCLqegepqseqevsaygc
MESIRElllillavillvQNLSNVEARYHHHKKQKNKGSTvpppaspenpvssspsyspsvpsdpypndpvnsTDCIFDVRDYGAVGDGSaddtaafraawkaacaVEAGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGAHYSQACVSNITVRNAIIRESDNGLRIKTWQGGTGCVSDLSFENIQMENVRNCINIDQYYCLSKECLNQTSAVFVTGITYRNIKGTYDVRTPPIHFACSDTVPCTKITMAEVELLPYEGQLLDDPFCWNAYGTQETLTIPPIDCLQEGEPQSEQEVSAYGC
*************************************************************************TDCIFDVRDYGAVGDGSADDTAAFRAAWKAACAVEAGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPC******************ALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSI*********DGIHIENTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGAHYSQACVSNITVRNAIIRESDNGLRIKTWQGGTGCVSDLSFENIQMENVRNCINIDQYYCLSKECLNQTSAVFVTGITYRNIKGTYDVRTPPIHFACSDTVPCTKITMAEVELLPYEGQLLDDPFCWNAYGTQETLTIPPIDCL****************
**SIRELLLILLAVILLVQNLSNVEA*************************************************CIFDVRDYGAVGDGSADDTAAFRAAWKAACAVEAGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLG*HYSQACVSNITVRNAIIRESDNGLRIKTWQGGTGCVSDLSFENIQMENVRNCINIDQYYCLSKE*LNQTSAVFVTGITYRNIKGTYDVRTPPIHFACSDTVPCTKITMAEVELLPYEGQLLDDPFCWNAYGTQETLTI********************GC
MESIRELLLILLAVILLVQNLSNVEAR**************************************YPNDPVNSTDCIFDVRDYGAVGDGSADDTAAFRAAWKAACAVEAGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPH**********PCDSPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGAHYSQACVSNITVRNAIIRESDNGLRIKTWQGGTGCVSDLSFENIQMENVRNCINIDQYYCLSKECLNQTSAVFVTGITYRNIKGTYDVRTPPIHFACSDTVPCTKITMAEVELLPYEGQLLDDPFCWNAYGTQETLTIPPIDCLQE**************
MESIRELLLILLAVILLVQNLSNVEA************************************************DCIFDVRDYGAVGDGSADDTAAFRAAWKAACAVEAGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGAHYSQACVSNITVRNAIIRESDNGLRIKTWQGGTGCVSDLSFENIQMENVRNCINIDQYYCLSKECLNQTSAVFVTGITYRNIKGTYDVRTPPIHFACSDTVPCTKITMAEVELLPYEGQLLDDPFCWNAYGTQETLTIPPIDCLQEG*************
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ooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MESIRELLLILLAVILLVQNLSNVEARYHHHKKQKNKGSTVPPPASPENPVSSSPSYSPSVPSDPYPNDPVNSTDCIFDVRDYGAVGDGSADDTAAFRAAWKAACAVEAGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGAHYSQACVSNITVRNAIIRESDNGLRIKTWQGGTGCVSDLSFENIQMENVRNCINIDQYYCLSKECLNQTSAVFVTGITYRNIKGTYDVRTPPIHFACSDTVPCTKITMAEVELLPYEGQLLDDPFCWNAYGTQETLTIPPIDCLQEGEPQSEQEVSAYGC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query472 2.2.26 [Sep-21-2011]
Q949Z1475 Polygalacturonase At1g481 yes no 1.0 0.993 0.703 0.0
Q94AJ5444 Probable polygalacturonas no no 0.811 0.862 0.409 9e-84
Q7M1E7514 Polygalacturonase OS=Cham N/A no 0.805 0.739 0.432 1e-83
P43212514 Polygalacturonase OS=Cryp N/A no 0.802 0.737 0.418 1e-83
Q9FY19507 Polygalacturonase OS=Juni N/A no 0.739 0.688 0.420 5e-78
P35336467 Polygalacturonase OS=Acti N/A no 0.792 0.800 0.419 2e-75
Q02096462 Polygalacturonase OS=Pers N/A no 0.781 0.798 0.412 2e-74
P48978460 Polygalacturonase OS=Malu N/A no 0.711 0.730 0.420 1e-70
O23147431 Polygalacturonase ADPG1 O no no 0.709 0.777 0.411 2e-70
Q9SFB7439 Polygalacturonase QRT2 OS no no 0.745 0.801 0.394 3e-69
>sp|Q949Z1|PGLR4_ARATH Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1 Back     alignment and function desciption
 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/475 (70%), Positives = 387/475 (81%), Gaps = 3/475 (0%)

Query: 1   MESIRELLLILLAVILLVQNLSNV-EARYHHHKKQKNKGSTVPPPASPENPVSSSPSYSP 59
           M  +  +L+I +   +L  + +NV  ARYH+HK +      +PPP  P    ++ P   P
Sbjct: 1   MRRLSGILVIYIISTVLFGHFTNVARARYHYHKGRHGVTHPLPPPPPPPLETANPPDQVP 60

Query: 60  SVPSDPYPNDPVNS-TDCIFDVRDYGAVGDGSADDTAAFRAAWKAACAVEAGVVLAPSDY 118
           S P       P +S + C+FDV  +GAVGDGS DDTAAF+ AWKAACAVE+GVVLAP   
Sbjct: 61  SDPYPSPDPAPGDSDSGCVFDVTSFGAVGDGSCDDTAAFQDAWKAACAVESGVVLAPEGG 120

Query: 119 VFKITSTIFSGPCKPGLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTI 178
           VFKITSTIFSGPCKPGLVFQLDGVLMPPDGP+ WP+ D++ QWLVFY+LD  TF+GKGT+
Sbjct: 121 VFKITSTIFSGPCKPGLVFQLDGVLMPPDGPEEWPEKDNKNQWLVFYRLDGFTFSGKGTV 180

Query: 179 EGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQFHMKFDG 238
           EGNGQ WWDLPCKPHRGP+GS+SSGPC SP +IRFFMS+N+ V GL IQNSPQFHMKFDG
Sbjct: 181 EGNGQKWWDLPCKPHRGPDGSSSSGPCASPTMIRFFMSNNIEVKGLRIQNSPQFHMKFDG 240

Query: 239 CEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCSDVDIADVT 298
           C+GV+I+++ ISSPKLSPNTDGIH+ NT+SVGIYNS++SNGDDCISIGTGCSDVDI  VT
Sbjct: 241 CQGVLINEIQISSPKLSPNTDGIHLGNTRSVGIYNSVVSNGDDCISIGTGCSDVDIQGVT 300

Query: 299 CGPSHGISIGSLGAHYSQACVSNITVRNAIIRESDNGLRIKTWQGGTGCVSDLSFENIQM 358
           CGPSHGISIGSLG H SQACVSNITVRN +IR+SDNGLR+KTWQGGTG VS+L FENIQM
Sbjct: 301 CGPSHGISIGSLGVHNSQACVSNITVRNTVIRDSDNGLRVKTWQGGTGSVSNLLFENIQM 360

Query: 359 ENVRNCINIDQYYCLSKECLNQTSAVFVTGITYRNIKGTYDVRTPPIHFACSDTVPCTKI 418
           ENV NCI +DQYYC SK+C N+TSAV V  + YRNIKGTYDVR+PPIHFACSDTV CT I
Sbjct: 361 ENVLNCIIVDQYYCQSKDCRNETSAVKVFDVEYRNIKGTYDVRSPPIHFACSDTVACTNI 420

Query: 419 TMAEVELLPYEGQLLDDPFCWNAYGTQETLTIPPIDCLQEGEPQSEQEV-SAYGC 472
           TM+EVELLP EG+L+DDPFCWNAYG QETLTIPPIDCL +G P  E+   S YGC
Sbjct: 421 TMSEVELLPEEGELVDDPFCWNAYGKQETLTIPPIDCLLDGSPVVEEAYDSNYGC 475
Polygalacturonase not involved in the final stages of pod shatter.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|Q94AJ5|PGLR5_ARATH Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1 Back     alignment and function description
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1 Back     alignment and function description
>sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1 Back     alignment and function description
>sp|Q9FY19|PGLR2_JUNAS Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1 Back     alignment and function description
>sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1 Back     alignment and function description
>sp|Q02096|PGLR_PERAE Polygalacturonase OS=Persea americana PE=2 SV=1 Back     alignment and function description
>sp|P48978|PGLR_MALDO Polygalacturonase OS=Malus domestica PE=2 SV=1 Back     alignment and function description
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SFB7|QRT2_ARATH Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query472
255556512479 Polygalacturonase precursor, putative [R 0.993 0.979 0.788 0.0
224101497482 predicted protein [Populus trichocarpa] 0.997 0.977 0.759 0.0
356555962479 PREDICTED: polygalacturonase At1g48100-l 1.0 0.985 0.740 0.0
449441508475 PREDICTED: polygalacturonase At1g48100-l 0.983 0.976 0.757 0.0
356532486474 PREDICTED: polygalacturonase At1g48100-l 0.980 0.976 0.758 0.0
356512221490 PREDICTED: polygalacturonase At1g48100 [ 0.997 0.961 0.730 0.0
356524988484 PREDICTED: polygalacturonase At1g48100-l 0.997 0.973 0.741 0.0
356555964483 PREDICTED: polygalacturonase At1g48100-l 1.0 0.977 0.729 0.0
225432118477 PREDICTED: polygalacturonase At1g48100-l 0.966 0.955 0.757 0.0
297847058474 glycoside hydrolase family 28 protein [A 0.993 0.989 0.704 0.0
>gi|255556512|ref|XP_002519290.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223541605|gb|EEF43154.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/482 (78%), Positives = 423/482 (87%), Gaps = 13/482 (2%)

Query: 1   MESIRELLLILLAVILLVQNLSNVEARYHHHKKQ----KNKGSTVPP-----PASPENPV 51
           ME IR LL+I +AVI L+QN SNVE RYH+HK +    K+ GS V P     PA P  P 
Sbjct: 1   MELIRGLLVISIAVIFLLQNSSNVEGRYHYHKPKGKPSKHTGSPVSPTPDNAPAEPSVP- 59

Query: 52  SSSPSYSPSVPSDPYPNDPVNST-DCIFDVRDYGAVGDGSADDTAAFRAAWKAACAVEAG 110
            S+P+ SP VPSDPYPNDP  ST DCIFDV  YGAVGDGS DDTAAF AAWKAACAVE+G
Sbjct: 60  -STPANSPLVPSDPYPNDPGKSTSDCIFDVTSYGAVGDGSTDDTAAFVAAWKAACAVESG 118

Query: 111 VVLAPSDYVFKITSTIFSGPCKPGLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDM 170
           V+LAPS Y F ITSTIFSGPC+PGLVFQ+DG LMPPDGPD+WP+ DS+KQWLVFY+L DM
Sbjct: 119 VILAPSGYSFMITSTIFSGPCQPGLVFQVDGCLMPPDGPDSWPEKDSKKQWLVFYRLTDM 178

Query: 171 TFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSP 230
           T TGKGTIEGNG+ WWDLPCKPHR PNG +S  PCDSPA+IRFFMSSNLVVSGL+IQNSP
Sbjct: 179 TLTGKGTIEGNGEKWWDLPCKPHRSPNGESSKEPCDSPAMIRFFMSSNLVVSGLSIQNSP 238

Query: 231 QFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCS 290
           QFHMKFDGCEGV+I+KLSISSPKLSPNTDGIHIENTK+VGIYNSMISNGDDCISIGTGCS
Sbjct: 239 QFHMKFDGCEGVLIEKLSISSPKLSPNTDGIHIENTKTVGIYNSMISNGDDCISIGTGCS 298

Query: 291 DVDIADVTCGPSHGISIGSLGAHYSQACVSNITVRNAIIRESDNGLRIKTWQGGTGCVSD 350
           +VDI  VTCGPSHGISIGSLG H SQACVSNITV NAIIR+SDNG+RIKTWQGGTGCVS 
Sbjct: 299 NVDIEGVTCGPSHGISIGSLGVHNSQACVSNITVSNAIIRDSDNGVRIKTWQGGTGCVSG 358

Query: 351 LSFENIQMENVRNCINIDQYYCLSKECLNQTSAVFVTGITYRNIKGTYDVRTPPIHFACS 410
           +SF+NIQMENVRNC+ IDQYYC+SK CLNQTSAV VT ++YRNIKGTYDVRTPPIHFACS
Sbjct: 359 ISFQNIQMENVRNCMIIDQYYCMSKACLNQTSAVHVTDVSYRNIKGTYDVRTPPIHFACS 418

Query: 411 DTVPCTKITMAEVELLPYEGQLLDDPFCWNAYGTQETLTIPPIDCLQEGEPQSEQEVSAY 470
           DTVPCT IT++EVELLP EG+L+DDPFCWNAYGT+ET+TIPP++CL++GEP+S QEVS Y
Sbjct: 419 DTVPCTNITLSEVELLPEEGELVDDPFCWNAYGTEETVTIPPLNCLRDGEPESVQEVS-Y 477

Query: 471 GC 472
           GC
Sbjct: 478 GC 479

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224101497|ref|XP_002312305.1| predicted protein [Populus trichocarpa] gi|222852125|gb|EEE89672.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356555962|ref|XP_003546297.1| PREDICTED: polygalacturonase At1g48100-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|449441508|ref|XP_004138524.1| PREDICTED: polygalacturonase At1g48100-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356532486|ref|XP_003534803.1| PREDICTED: polygalacturonase At1g48100-like [Glycine max] Back     alignment and taxonomy information
>gi|356512221|ref|XP_003524819.1| PREDICTED: polygalacturonase At1g48100 [Glycine max] Back     alignment and taxonomy information
>gi|356524988|ref|XP_003531109.1| PREDICTED: polygalacturonase At1g48100-like [Glycine max] Back     alignment and taxonomy information
>gi|356555964|ref|XP_003546298.1| PREDICTED: polygalacturonase At1g48100-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|225432118|ref|XP_002263668.1| PREDICTED: polygalacturonase At1g48100-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297847058|ref|XP_002891410.1| glycoside hydrolase family 28 protein [Arabidopsis lyrata subsp. lyrata] gi|297337252|gb|EFH67669.1| glycoside hydrolase family 28 protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query472
TAIR|locus:2023817475 AT1G48100 [Arabidopsis thalian 0.841 0.835 0.751 2.5e-173
TAIR|locus:2196055491 AT1G02460 [Arabidopsis thalian 0.824 0.792 0.588 7.5e-135
TAIR|locus:2027534434 AT1G56710 [Arabidopsis thalian 0.811 0.882 0.548 1.2e-122
TAIR|locus:2141345468 AT4G01890 [Arabidopsis thalian 0.824 0.831 0.536 4.1e-120
TAIR|locus:2222657435 AT5G14650 [Arabidopsis thalian 0.807 0.875 0.448 7.5e-89
TAIR|locus:2088842470 AT3G26610 [Arabidopsis thalian 0.796 0.8 0.410 8.4e-79
TAIR|locus:2036581540 AT1G60590 [Arabidopsis thalian 0.663 0.579 0.463 8.4e-74
TAIR|locus:2016314444 AT1G80170 [Arabidopsis thalian 0.811 0.862 0.391 1.4e-73
TAIR|locus:2019963532 AT1G10640 [Arabidopsis thalian 0.542 0.481 0.521 2e-72
TAIR|locus:2026795468 AT1G70500 [Arabidopsis thalian 0.809 0.816 0.385 3.2e-72
TAIR|locus:2023817 AT1G48100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1664 (590.8 bits), Expect = 2.5e-173, Sum P(2) = 2.5e-173
 Identities = 299/398 (75%), Positives = 337/398 (84%)

Query:    76 CIFDVRDYGAVGDGSXXXXXXXXXXXXXXXXVEAGVVLAPSDYVFKITSTIFSGPCKPGL 135
             C+FDV  +GAVGDGS                VE+GVVLAP   VFKITSTIFSGPCKPGL
Sbjct:    78 CVFDVTSFGAVGDGSCDDTAAFQDAWKAACAVESGVVLAPEGGVFKITSTIFSGPCKPGL 137

Query:   136 VFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRG 195
             VFQLDGVLMPPDGP+ WP+ D++ QWLVFY+LD  TF+GKGT+EGNGQ WWDLPCKPHRG
Sbjct:   138 VFQLDGVLMPPDGPEEWPEKDNKNQWLVFYRLDGFTFSGKGTVEGNGQKWWDLPCKPHRG 197

Query:   196 PNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLS 255
             P+GS+SSGPC SP +IRFFMS+N+ V GL IQNSPQFHMKFDGC+GV+I+++ ISSPKLS
Sbjct:   198 PDGSSSSGPCASPTMIRFFMSNNIEVKGLRIQNSPQFHMKFDGCQGVLINEIQISSPKLS 257

Query:   256 PNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGAHYS 315
             PNTDGIH+ NT+SVGIYNS++SNGDDCISIGTGCSDVDI  VTCGPSHGISIGSLG H S
Sbjct:   258 PNTDGIHLGNTRSVGIYNSVVSNGDDCISIGTGCSDVDIQGVTCGPSHGISIGSLGVHNS 317

Query:   316 QACVSNITVRNAIIRESDNGLRIKTWQGGTGCVSDLSFENIQMENVRNCINIDQYYCLSK 375
             QACVSNITVRN +IR+SDNGLR+KTWQGGTG VS+L FENIQMENV NCI +DQYYC SK
Sbjct:   318 QACVSNITVRNTVIRDSDNGLRVKTWQGGTGSVSNLLFENIQMENVLNCIIVDQYYCQSK 377

Query:   376 ECLNQTSAVFVTGITYRNIKGTYDVRTPPIHFACSDTVPCTKITMAEVELLPYEGQLLDD 435
             +C N+TSAV V  + YRNIKGTYDVR+PPIHFACSDTV CT ITM+EVELLP EG+L+DD
Sbjct:   378 DCRNETSAVKVFDVEYRNIKGTYDVRSPPIHFACSDTVACTNITMSEVELLPEEGELVDD 437

Query:   436 PFCWNAYGTQETLTIPPIDCLQEGEPQSEQEV-SAYGC 472
             PFCWNAYG QETLTIPPIDCL +G P  E+   S YGC
Sbjct:   438 PFCWNAYGKQETLTIPPIDCLLDGSPVVEEAYDSNYGC 475
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
TAIR|locus:2196055 AT1G02460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027534 AT1G56710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141345 AT4G01890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2222657 AT5G14650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088842 AT3G26610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036581 AT1G60590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016314 AT1G80170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019963 AT1G10640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026795 AT1G70500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q949Z1PGLR4_ARATH3, ., 2, ., 1, ., 1, 50.70311.00.9936yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.150.979
3rd Layer3.2.10.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query472
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 1e-114
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 5e-90
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 5e-89
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 3e-79
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 2e-72
PLN03010409 PLN03010, PLN03010, polygalacturonase 2e-72
PLN02155394 PLN02155, PLN02155, polygalacturonase 3e-70
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 5e-32
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 4e-10
pfam13229157 pfam13229, Beta_helix, Right handed beta helix reg 4e-04
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information 
 Score =  343 bits (882), Expect = e-114
 Identities = 167/394 (42%), Positives = 225/394 (57%), Gaps = 14/394 (3%)

Query: 77  IFDVRDYGAVGDGSADDTAAFRAAWKAACAVEAGV-VLAPSDYVFKITSTIFSGPCKPGL 135
           +  V D+GA GDG  DDT AF+ AWK AC+ +    ++ P+ Y F +      GPCK  L
Sbjct: 52  VLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPCKAKL 111

Query: 136 VFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRG 195
             Q+ G ++ P  PD W K  + ++WL F+ ++ +T  G GT+ G G  WW   CK    
Sbjct: 112 TLQISGTIIAPKDPDVW-KGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCK---- 166

Query: 196 PNGSTSSGPCD-SPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKL 254
                 + PC  +P  I F    +L V  L + +S Q H+ F  C  V I  L + +P  
Sbjct: 167 ---INHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPAT 223

Query: 255 SPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGAHY 314
           SPNTDGIHI  ++ V I +S++  GDDCISI    S + I ++ CGP HGISIGSLG   
Sbjct: 224 SPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSN 283

Query: 315 SQACVSNITVRNAIIRESDNGLRIKTWQGGTGCVSDLSFENIQMENVRNCINIDQYYCLS 374
           S + V +ITV  A +  +DNG+RIKTWQGG+G  S ++F+NI MENV N I IDQYYC S
Sbjct: 284 SWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDS 343

Query: 375 -KECLNQTSAVFVTGITYRNIKGTYDVRTPPIHFACSDTVPCTKITMAEVELLPYEGQLL 433
            K C NQTSAV V  I++ +IKGT       I FACSD+ PC  + + +V+LL   G   
Sbjct: 344 RKPCANQTSAVKVENISFVHIKGT-SATEEAIKFACSDSSPCEGLYLEDVQLLSSTGDFT 402

Query: 434 DDPFCWNAYGTQETLTIPPIDCLQEGEPQSEQEV 467
           +  FCW AYG+      PP  C  +     +Q+V
Sbjct: 403 ES-FCWEAYGSSSGQVYPP-PCFSDSTSFIKQKV 434

Length = 443
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information
>gnl|CDD|221993 pfam13229, Beta_helix, Right handed beta helix region Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 472
PLN02793443 Probable polygalacturonase 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN02155394 polygalacturonase 100.0
PLN03010409 polygalacturonase 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.92
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.87
PLN03003456 Probable polygalacturonase At3g15720 99.86
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.85
PLN02793443 Probable polygalacturonase 99.85
PLN02218431 polygalacturonase ADPG 99.85
PLN03010409 polygalacturonase 99.85
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.83
PLN02155394 polygalacturonase 99.83
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.71
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.6
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.32
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.94
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.78
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.68
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.53
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.53
smart00656190 Amb_all Amb_all domain. 98.5
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.49
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 98.41
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.41
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.35
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.26
PLN02304379 probable pectinesterase 98.19
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 98.18
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.16
PLN02634359 probable pectinesterase 98.13
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.12
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.09
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.02
smart00656190 Amb_all Amb_all domain. 97.89
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 97.76
PLN02773317 pectinesterase 97.75
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.62
PRK10531422 acyl-CoA thioesterase; Provisional 97.62
PLN02480343 Probable pectinesterase 97.61
PF1221867 End_N_terminal: N terminal extension of bacterioph 97.54
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 97.49
PLN02665366 pectinesterase family protein 97.48
PLN02176340 putative pectinesterase 97.42
PLN02682369 pectinesterase family protein 97.42
PLN02170529 probable pectinesterase/pectinesterase inhibitor 97.4
PLN02432293 putative pectinesterase 97.31
PLN02506537 putative pectinesterase/pectinesterase inhibitor 97.27
PLN02301548 pectinesterase/pectinesterase inhibitor 97.23
PLN02916502 pectinesterase family protein 97.23
PLN02201520 probable pectinesterase/pectinesterase inhibitor 97.22
PLN02484587 probable pectinesterase/pectinesterase inhibitor 97.22
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 97.16
PLN02488509 probable pectinesterase/pectinesterase inhibitor 97.15
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 97.13
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 97.11
PLN02671359 pectinesterase 97.1
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 97.09
PLN02314586 pectinesterase 97.09
PLN02416541 probable pectinesterase/pectinesterase inhibitor 97.09
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 97.08
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 97.07
PLN02497331 probable pectinesterase 97.07
PLN02313587 Pectinesterase/pectinesterase inhibitor 97.02
PLN02217670 probable pectinesterase/pectinesterase inhibitor 97.02
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 96.95
PLN02468565 putative pectinesterase/pectinesterase inhibitor 96.92
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 96.92
PLN02197588 pectinesterase 96.74
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.54
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 95.96
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 95.07
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 94.94
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 94.41
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 94.01
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 92.44
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 92.18
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 91.56
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 90.62
PLN02665366 pectinesterase family protein 89.54
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 88.81
PLN02773317 pectinesterase 88.62
PF09251549 PhageP22-tail: Salmonella phage P22 tail-spike; In 86.7
PF09251549 PhageP22-tail: Salmonella phage P22 tail-spike; In 84.78
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 80.28
>PLN02793 Probable polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=1.1e-79  Score=635.93  Aligned_cols=379  Identities=43%  Similarity=0.834  Sum_probs=344.5

Q ss_pred             CCceEEeeeecccCCCCcchHHHHHHHHHHHhhc-CCcEEEecCCcEEEEeeeeecCCCCCceEEEeCceEeCCCCCCCC
Q 012057           74 TDCIFDVRDYGAVGDGSADDTAAFRAAWKAACAV-EAGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDGVLMPPDGPDTW  152 (472)
Q Consensus        74 ~~~~~~V~dfGA~gDG~tDdT~Aiq~Ai~~a~~~-~g~~V~iP~G~ty~i~~~~l~gp~~s~v~l~~~Gtl~~~~~~~~~  152 (472)
                      .+++|||+||||+|||++|||+|||+||++||+. +|++|+||+|++|+++++.|+||||++++|+++|+|+++.++.+|
T Consensus        49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~g~l~~~~d~~~w  128 (443)
T PLN02793         49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQISGTIIAPKDPDVW  128 (443)
T ss_pred             CceEEEhhhcccCCCCCCccHHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCccCCCeEEEEEEEEEccCChHHc
Confidence            3589999999999999999999999999977875 579999999977999999999999999999999999999999999


Q ss_pred             CCCCCCceEEEEEeecCcEEEeeeeeecCCCcccCCCCCCCCCCCCCCCCCCCCCCeEEEEEeeeeEEEeceEEecCCCC
Q 012057          153 PKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQF  232 (472)
Q Consensus       153 ~~~~~~~~~i~~~~~~nvtI~G~GtIdG~g~~~w~~~~~~~~g~~g~~~~g~~~rp~~i~~~~~~nv~I~~v~i~ns~~~  232 (472)
                      +.. ..+.|+.+.+.+|++|+|.|+|||+|+.||...++... .+..     ..||++|+|.+|+|++|++++++|+|.|
T Consensus       129 ~~~-~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~-~~~~-----~~rP~~i~f~~~~nv~v~gitl~nSp~~  201 (443)
T PLN02793        129 KGL-NPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINH-TNPC-----RHAPTAITFHKCKDLRVENLNVIDSQQM  201 (443)
T ss_pred             cCC-CCceEEEEecCceEEEEeceEEECCCcccccccccccC-CCCc-----cCCceEEEEEeeccEEEECeEEEcCCCe
Confidence            865 34679999999999999999999999999976432111 1110     1489999999999999999999999999


Q ss_pred             eeeeeccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEecCCceEEeCCCceeEEEEeeeecCCCcceecccCc
Q 012057          233 HMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGA  312 (472)
Q Consensus       233 ~i~~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~~~gi~iGs~~~  312 (472)
                      ++++.+|+||+|++++|.++..++|+|||++.+|+||+|+||+|.++||||+++++++||+|+||+|..+|||+|||+++
T Consensus       202 ~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~  281 (443)
T PLN02793        202 HIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGK  281 (443)
T ss_pred             EEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccC
Confidence            99999999999999999998888999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCcEEEEEEEeEEEecCCceEEEEeecCCCceeeeEEEEeEEEEccCeeEEEEeeccCC-ccccCCCCceEEEeEEE
Q 012057          313 HYSQACVSNITVRNAIIRESDNGLRIKTWQGGTGCVSDLSFENIQMENVRNCINIDQYYCLS-KECLNQTSAVFVTGITY  391 (472)
Q Consensus       313 ~~~~~~i~nI~i~n~~i~~~~~gi~I~~~~g~~g~v~nI~f~Ni~~~~v~~~i~I~~~~~~~-~~~~~~~~~~~i~nI~f  391 (472)
                      +...+.|+||+|+||++.++.+|+|||+|+++.|.|+||+|+||+|+++.+||.|+++|+.. ++|.+.++.+.|+||+|
T Consensus       282 ~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~  361 (443)
T PLN02793        282 SNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISF  361 (443)
T ss_pred             cCCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEE
Confidence            87778999999999999999999999999999999999999999999999999999999874 36877788999999999


Q ss_pred             EeEEEEeeCCCCceEEecCCCCceeeEEEEEEEEEcCCCCccCCceeecceeeeeeeecCCccccCCCCCC
Q 012057          392 RNIKGTYDVRTPPIHFACSDTVPCTKITMAEVELLPYEGQLLDDPFCWNAYGTQETLTIPPIDCLQEGEPQ  462 (472)
Q Consensus       392 ~nI~~t~~~~~~~~~i~~~~~~~~~~i~~~ni~~~~~~~~~~~~~~c~~~~g~~~~~~~~~~~~~~~~~~~  462 (472)
                      +||+++...+ .++.+.|++..||+||+|+||+++...|. .....|||++|...+...|| +||.++.+.
T Consensus       362 ~nI~Gt~~~~-~ai~l~cs~~~pc~ni~l~nI~l~~~~g~-~~~~~C~n~~g~~~~~~~p~-~C~~~~~~~  429 (443)
T PLN02793        362 VHIKGTSATE-EAIKFACSDSSPCEGLYLEDVQLLSSTGD-FTESFCWEAYGSSSGQVYPP-PCFSDSTSF  429 (443)
T ss_pred             EEEEEEEccc-ccEEEEeCCCCCEeeEEEEeeEEEecCCC-CCCcEEEccEEeECCeEcCC-ccccCCCcc
Confidence            9999988543 47899999999999999999999987665 34689999999999998777 899887753

>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query472
1nhc_A336 Structural Insights Into The Processivity Of Endopo 5e-20
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 7e-19
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 3e-18
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 1e-17
1rmg_A422 Rhamnogalacturonase A From Aspergillus Aculeatus Le 9e-17
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 3e-16
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 4e-16
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 4e-10
1k5c_A335 Endopolygalacturonase I From Stereum Purpureum At 0 9e-08
2uve_A608 Structure Of Yersinia Enterocolitica Family 28 Exop 3e-05
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure 
Iteration: 1

 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 129/277 (46%), Gaps = 24/277 (8%)
Query: 159 KQW---LVFYKLDDMTFT--GKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRF 213
           K+W   L+ +   D+T T      I+G+G  WWD      +G NG  +      P  +  
Sbjct: 56  KEWKGPLIRFGGKDLTVTMADGAVIDGDGSRWWD-----SKGTNGGKTK-----PKFMYI 105
Query: 214 FMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPN----TDGIHIENTKSV 269
               +    G+ I+N+P   +       V ++  +I +     N    TDG  I  +  V
Sbjct: 106 HDVEDSTFKGINIKNTPVQAISVQATN-VHLNDFTIDNSDGDDNGGHNTDGFDISESTGV 164
Query: 270 GIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGAHYSQACVSNITVRNAII 329
            I  + + N DDCI+I +G S +     TC   HG+SIGS+G       V N+T+ ++ +
Sbjct: 165 YISGATVKNQDDCIAINSGES-ISFTGGTCSGGHGLSIGSVGGR-DDNTVKNVTISDSTV 222
Query: 330 RESDNGLRIKTWQGGTGCVSDLSFENIQMENVRN-CINIDQYYCLSKECLNQTSAVFVTG 388
             S NG+RIKT    TG VS++++ NIQ+  + +  I I+Q Y         ++ + +T 
Sbjct: 223 SNSANGVRIKTIYKETGDVSEITYSNIQLSGITDYGIVIEQDYENGSPTGTPSTGIPITD 282
Query: 389 ITYRNIKGTYDVRTPPIHFACSDTVPCTKITMAEVEL 425
           +T   + GT +     ++  C D   C+  T + V+L
Sbjct: 283 VTVDGVTGTLEDDATQVYILCGDG-SCSDWTWSGVDL 318
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus Length = 422 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A Resolution Length = 335 Back     alignment and structure
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase Length = 608 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query472
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 1e-127
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 1e-124
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 1e-114
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 1e-112
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 1e-106
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 1e-103
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 1e-102
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 4e-98
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 2e-96
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 8e-93
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 4e-34
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 2e-32
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 1e-31
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 4e-27
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 7e-24
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 4e-19
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 7e-14
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 6e-06
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 3e-11
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 4e-05
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
 Score =  376 bits (966), Expect = e-127
 Identities = 96/413 (23%), Positives = 162/413 (39%), Gaps = 35/413 (8%)

Query: 60  SVPSDPYPNDPVNSTDCIFDVRDYGAVGDGSADDTAAFRAAWKAACAVEAGVVLAPSDYV 119
           S    P  +          ++  YGAV D S D   A  +AW AAC    G+V  PS   
Sbjct: 3   SGSVGPLTSASTKGATKTCNILSYGAVADNSTDVGPAITSAW-AACK-SGGLVYIPSGNY 60

Query: 120 FKITSTIFSGPCKPGLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIE 179
              T    +G        QLDG++           A            +  + T KG ++
Sbjct: 61  ALNTWVTLTGGSA--TAIQLDGIIYRTGTASGNMIA-----VTDTTDFELFSSTSKGAVQ 113

Query: 180 GNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGC 239
           G G  +                +       ++R    ++  V  + + ++P FH   D C
Sbjct: 114 GFGYVYH---------------AEGTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTC 158

Query: 240 EGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTC 299
               +  ++I         DGI +  + ++ +++  ++N D+C+++ +  +++ +  + C
Sbjct: 159 SDGEVYNMAIRGGN-EGGLDGIDVWGS-NIWVHDVEVTNKDECVTVKSPANNILVESIYC 216

Query: 300 GPSHGISIGSLGAHYSQACVSNITVRNAIIRESDNGLRIKTWQGGTGCVSDLSFENIQME 359
             S G ++GSLGA      V++I  RN     S+    IK+  GG+G VS++  EN    
Sbjct: 217 NWSGGCAMGSLGAD---TDVTDIVYRNVYTWSSNQMYMIKSN-GGSGTVSNVLLENFIGH 272

Query: 360 NVRNCINIDQYYCLSKECLNQTSAVFVTGITYRNIKGTY--DVRTPPIHFACSDTVPCTK 417
                ++ID Y+            V +  IT +N KGT       PPI   CSDT PCT 
Sbjct: 273 GNAYSLDIDGYWS--SMTAVAGDGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTD 330

Query: 418 ITMAEVELLPYEGQLLDDPFCWNAYGTQETLTIPPIDCLQEGEPQSEQEVSAY 470
           +T+ ++ +    G   +   C +AYG+   L                   S Y
Sbjct: 331 LTLEDIAIWTESGS-SELYLCRSAYGSGYCLKDSSSHTSYTTTSTVTAAPSGY 382
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query472
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 100.0
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 99.97
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.97
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.93
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.9
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.89
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.87
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.87
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.87
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.86
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.84
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.84
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.84
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.84
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.76
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.75
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.57
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.51
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.4
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.4
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.37
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.28
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.2
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.03
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.83
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.57
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 98.56
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.54
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.52
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.5
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.5
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.46
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.46
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.46
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.41
2x3h_A 542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 98.38
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 98.38
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.3
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 98.27
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.2
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.2
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.17
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.15
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 98.13
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.13
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.96
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.95
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.93
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.91
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 97.68
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.63
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 97.59
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 97.52
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.2
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.0
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 96.84
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 96.4
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 95.78
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 95.51
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 95.42
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 95.21
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 94.96
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 94.17
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 93.46
3ju4_A 670 Endo-N-acetylneuraminidase; endonf, polysia, high- 92.75
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 92.06
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 90.0
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 88.11
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 87.28
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=2.7e-64  Score=524.83  Aligned_cols=338  Identities=25%  Similarity=0.393  Sum_probs=295.9

Q ss_pred             CceEEeeeecccCCCCcchHHHHHHHHHHHhhcCCcEEEecCCcEEEEeeeeecCCCCCceEEEeCceEeCCCCCCCC-C
Q 012057           75 DCIFDVRDYGAVGDGSADDTAAFRAAWKAACAVEAGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDGVLMPPDGPDTW-P  153 (472)
Q Consensus        75 ~~~~~V~dfGA~gDG~tDdT~Aiq~Ai~~a~~~~g~~V~iP~G~ty~i~~~~l~gp~~s~v~l~~~Gtl~~~~~~~~~-~  153 (472)
                      +.+|||++|||+|||+||||+|||+||+++++.++++|+||+| +|+++++.|    +++++|+++|+|+++.++.+| |
T Consensus        25 ~~~~~v~~~GA~gdg~tddt~Aiq~Ai~~c~~~ggg~v~vP~G-~yl~~~l~l----~s~v~l~l~gtL~~s~d~~~y~p   99 (448)
T 3jur_A           25 DREVNLLDFGARGDGRTDCSESFKRAIEELSKQGGGRLIVPEG-VFLTGPIHL----KSNIELHVKGTIKFIPDPERYLP   99 (448)
T ss_dssp             SCEEEGGGGTCCCEEEEECHHHHHHHHHHHHHHTCEEEEECSS-EEEESCEEC----CTTEEEEESSEEEECCCGGGGCS
T ss_pred             CcEEEEEecccCCCCCeecHHHHHHHHHhhhhcCCeEEEECCC-cEEEeeeEe----CCCcEEEEEEEEEecCCHHHhCc
Confidence            5789999999999999999999999999655567899999999 899999988    899999999999999999998 5


Q ss_pred             CCC---------CCceEEEEEeecCcEEEeeeeeecCC--CcccCCCCCCCCC-----CC------------------CC
Q 012057          154 KAD---------SRKQWLVFYKLDDMTFTGKGTIEGNG--QPWWDLPCKPHRG-----PN------------------GS  199 (472)
Q Consensus       154 ~~~---------~~~~~i~~~~~~nvtI~G~GtIdG~g--~~~w~~~~~~~~g-----~~------------------g~  199 (472)
                      ...         ...+||.+.+++||+|+|.|+|||+|  +.||.+......+     +.                  ..
T Consensus       100 ~~~~~~~G~~~~~~~~lI~~~~~~ni~ItG~GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~  179 (448)
T 3jur_A          100 VVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEE  179 (448)
T ss_dssp             CEEEEETTEEEEESCCSEEEESCEEEEEESSCEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHHHHHHHTCCGGG
T ss_pred             ccccccccccccCccceEEEeCcEeeEEEEeEEEECCCCchhhhhhcccccccccccccccccchhhhhhhhcccCcchh
Confidence            321         12468999999999999999999999  8899854321100     00                  00


Q ss_pred             CC--CCCCCCCeEEEEEeeeeEEEeceEEecCCCCeeeeeccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEe
Q 012057          200 TS--SGPCDSPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMIS  277 (472)
Q Consensus       200 ~~--~g~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~  277 (472)
                      ..  .+...||++|.|.+|+|++|+|++++|++.|++++..|+|++|++++|.++  ++|+|||++.+|+||+|+||+|.
T Consensus       180 ~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~nV~I~n~~i~  257 (448)
T 3jur_A          180 RVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYMLIEKCRFD  257 (448)
T ss_dssp             CBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEEEEEESCEEE
T ss_pred             hhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcCEEEEeeEEE
Confidence            00  123378999999999999999999999999999999999999999999996  68999999999999999999999


Q ss_pred             cCCceEEeCCC-----------ceeEEEEeeee--cCCC-cceecccCccCCCCcEEEEEEEeEEEecCCceEEEEeecC
Q 012057          278 NGDDCISIGTG-----------CSDVDIADVTC--GPSH-GISIGSLGAHYSQACVSNITVRNAIIRESDNGLRIKTWQG  343 (472)
Q Consensus       278 ~gDD~I~i~s~-----------s~nI~I~n~~~--~~~~-gi~iGs~~~~~~~~~i~nI~i~n~~i~~~~~gi~I~~~~g  343 (472)
                      ++||||+++++           ++||+|+||+|  ..+| ||+|||++    .+.++||+|+||++.++++|++||+|.+
T Consensus       258 ~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~----~~~v~nV~v~n~~~~~t~~GirIKt~~g  333 (448)
T 3jur_A          258 TGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEM----SGGVRNVVARNNVYMNVERALRLKTNSR  333 (448)
T ss_dssp             ESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSC----TTCEEEEEEESCEEESCSEEEEEECCTT
T ss_pred             eCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcc----cCcEEEEEEEEEEEecccceEEEEEEcC
Confidence            99999999997           89999999999  5576 89999986    4689999999999999999999999988


Q ss_pred             CCceeeeEEEEeEEEEccCeeE-EEEeeccCCccccCCCCceEEEeEEEEeEEEEeeCCCCceEEecCCCCceeeEEEEE
Q 012057          344 GTGCVSDLSFENIQMENVRNCI-NIDQYYCLSKECLNQTSAVFVTGITYRNIKGTYDVRTPPIHFACSDTVPCTKITMAE  422 (472)
Q Consensus       344 ~~g~v~nI~f~Ni~~~~v~~~i-~I~~~~~~~~~~~~~~~~~~i~nI~f~nI~~t~~~~~~~~~i~~~~~~~~~~i~~~n  422 (472)
                      +.|.|+||+|+||+|+++.+++ .|+++|+..  +  ....+.|+||+|+||+++..  ..++.+.|+++.+|+||+|+|
T Consensus       334 ~gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~--~--~~~~~~i~nI~~~NI~~t~~--~~~i~i~g~~~~p~~~I~~~n  407 (448)
T 3jur_A          334 RGGYMENIFFIDNVAVNVSEEVIRINLRYDNE--E--GEYLPVVRSVFVKNLKATGG--KYAVRIEGLENDYVKDILISD  407 (448)
T ss_dssp             TCSEEEEEEEESCEEEEESSEEEEEESCGGGC--C--CSCCCEEEEEEEESCEEEEC--SEEEEEECBTTBCEEEEEEEE
T ss_pred             CCceEeeEEEEEEEEECCccccEEEEeeccCC--C--CCCCceEEEEEEEeEEEEec--ceEEEEEeCCCCCEeeEEEEE
Confidence            8899999999999999999988 999999864  2  33567999999999999873  247899999999999999999


Q ss_pred             EEEEcCC
Q 012057          423 VELLPYE  429 (472)
Q Consensus       423 i~~~~~~  429 (472)
                      |+++...
T Consensus       408 v~i~~~~  414 (448)
T 3jur_A          408 TIIEGAK  414 (448)
T ss_dssp             EEEESCS
T ss_pred             EEEEccc
Confidence            9999754
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 472
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 3e-87
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 6e-74
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 5e-73
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-68
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 3e-64
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 4e-63
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 5e-62
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 2e-61
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  271 bits (693), Expect = 3e-87
 Identities = 94/405 (23%), Positives = 162/405 (40%), Gaps = 43/405 (10%)

Query: 65  PYPNDPVNSTDCIFDVRDYGAVGDGSADDTAAFRAAWKAACAVEAGVVLAPSDYVFKITS 124
           P  +          ++  YGAV D S D   A  +AW AAC    G+V  PS      T 
Sbjct: 8   PLTSASTKGATKTCNILSYGAVADNSTDVGPAITSAW-AACK-SGGLVYIPSGNYALNTW 65

Query: 125 TIFSGPCKPGLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQP 184
              +G        QLDG++           A            +  + T KG ++G G  
Sbjct: 66  VTLTGGSA--TAIQLDGIIYRTGTASGNMIA-----VTDTTDFELFSSTSKGAVQGFGYV 118

Query: 185 WWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMI 244
           +                +       ++R    ++  V  + + ++P FH   D C    +
Sbjct: 119 YH---------------AEGTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEV 163

Query: 245 DKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHG 304
             ++I         DGI +  +  + +++  ++N D+C+++ +  +++ +  + C  S G
Sbjct: 164 YNMAIRGGN-EGGLDGIDVWGSN-IWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGG 221

Query: 305 ISIGSLGAHYSQACVSNITVRNAIIRESDNGLRIKTWQGGTGCVSDLSFENIQMENVRNC 364
            ++GSLGA      V++I  RN     S+    IK+  GG+G VS++  EN         
Sbjct: 222 CAMGSLGAD---TDVTDIVYRNVYTWSSNQMYMIKSN-GGSGTVSNVLLENFIGHGNAYS 277

Query: 365 INIDQYYCLSKECLNQTSAVFVTGITYRNIKGTY--DVRTPPIHFACSDTVPCTKITMAE 422
           ++ID Y+            V +  IT +N KGT       PPI   CSDT PCT +T+ +
Sbjct: 278 LDIDGYWSSMTAV--AGDGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLED 335

Query: 423 VELLPYEGQLLDDPFCWNAYGTQETLTIPPIDCLQEGEPQSEQEV 467
           + +    G   +   C +AYG+          CL++    +    
Sbjct: 336 IAIWTESGS-SELYLCRSAYGSGY--------CLKDSSSHTSYTT 371
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query472
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.85
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.83
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.82
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.8
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.78
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.76
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.69
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.6
d1h80a_464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.49
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.65
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 98.46
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.16
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 98.1
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 98.0
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.97
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.89
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.88
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.82
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 97.61
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.55
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.46
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.41
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.27
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 97.04
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 96.55
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.67
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 95.25
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 94.6
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 93.66
d1v0ea1 516 Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 34 89.58
d1tywa_554 P22 tailspike protein {Salmonella phage P22 [TaxId 81.55
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=3.8e-63  Score=511.57  Aligned_cols=348  Identities=26%  Similarity=0.465  Sum_probs=300.6

Q ss_pred             CCceEEeeeecccCCCCcchHHHHHHHHHHHhhcCCcEEEecCCcEEEEe-eeeecCCCCCceEEEeCceEeCCCCCCCC
Q 012057           74 TDCIFDVRDYGAVGDGSADDTAAFRAAWKAACAVEAGVVLAPSDYVFKIT-STIFSGPCKPGLVFQLDGVLMPPDGPDTW  152 (472)
Q Consensus        74 ~~~~~~V~dfGA~gDG~tDdT~Aiq~Ai~~a~~~~g~~V~iP~G~ty~i~-~~~l~gp~~s~v~l~~~Gtl~~~~~~~~~  152 (472)
                      ..++|||+||||+|||+||||+|||+||+ ||+. |++|+||+| +|++. .+.|.|  .+++.|+++|+|++......|
T Consensus        17 ~~k~~nV~dfGA~gDG~tDdT~Ai~~Ai~-ac~~-gg~V~iP~G-ty~l~~~i~l~g--~~~~~l~~~G~i~~~~~~~~~   91 (422)
T d1rmga_          17 ATKTCNILSYGAVADNSTDVGPAITSAWA-ACKS-GGLVYIPSG-NYALNTWVTLTG--GSATAIQLDGIIYRTGTASGN   91 (422)
T ss_dssp             HHCEEEGGGGTCCCSSSSBCHHHHHHHHH-HHTB-TCEEEECSS-EEEECSCEEEES--CEEEEEEECSEEEECCCCSSE
T ss_pred             CCcEEEEecCCCCCCCCccCHHHHHHHHH-hcCC-CCEEEECCC-cEEEeCcEEEcC--CCceEEEEeEEEEeccCCccC
Confidence            46799999999999999999999999997 7865 789999999 77665 588988  568999999999876554322


Q ss_pred             CCCCCCceEEEEEeecCcEEEeeeeeecCCCcccCCCCCCCCCCCCCCCCCCCCCCeEEEEEeeeeEEEeceEEecCCCC
Q 012057          153 PKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQF  232 (472)
Q Consensus       153 ~~~~~~~~~i~~~~~~nvtI~G~GtIdG~g~~~w~~~~~~~~g~~g~~~~g~~~rp~~i~~~~~~nv~I~~v~i~ns~~~  232 (472)
                      .     ..+....+...+++.|.|+|||+|..||...               ..+|.+|+|.+|+|++|++++++|++.|
T Consensus        92 ~-----~~~~~~~~~~~~~~~g~G~IdG~G~~~~~~~---------------~~~p~~l~~~~~~n~~i~git~~nsp~~  151 (422)
T d1rmga_          92 M-----IAVTDTTDFELFSSTSKGAVQGFGYVYHAEG---------------TYGARILRLTDVTHFSVHDIILVDAPAF  151 (422)
T ss_dssp             E-----EEEEEEEEEEEECSSSCCEEECCTHHHHTTT---------------CCCCEEEEEEEEEEEEEEEEEEECCSSC
T ss_pred             E-----EEeccCccEEEEEeecceEEecCcceecCCC---------------CCCCcEEEEEeeeeeEEECcEecCCCce
Confidence            1     2233344555666788999999999999642               2578899999999999999999999999


Q ss_pred             eeeeeccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEecCCceEEeCCCceeEEEEeeeecCCCcceecccCc
Q 012057          233 HMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGA  312 (472)
Q Consensus       233 ~i~~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~~~gi~iGs~~~  312 (472)
                      ++.+..|++++|+|++|.++ ..+|+|||++.+ +||+|+||+|.++||||+++++++||+|+|++|..+||++|||++.
T Consensus       152 ~i~i~~c~~v~i~nv~I~~~-~~~NtDGIdi~~-snv~I~n~~i~~gDDcIaiks~s~nI~i~n~~c~~g~GisiGs~g~  229 (422)
T d1rmga_         152 HFTMDTCSDGEVYNMAIRGG-NEGGLDGIDVWG-SNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGA  229 (422)
T ss_dssp             SEEEEEEEEEEEEEEEEECC-SSTTCCSEEEEE-EEEEEEEEEEESSSEEEEEEEEEEEEEEEEEEEESSSEEEEEEECT
T ss_pred             EEEEeccccEEEEeeEEcCC-CCCccceEeecc-cEEEEEeeEEEcCCCccccCCCCccEEEEeeEEccccceeEeeccC
Confidence            99999999999999999985 457999999976 5899999999999999999999999999999999999999999874


Q ss_pred             cCCCCcEEEEEEEeEEEecCCceEEEEeecCCCceeeeEEEEeEEEEccCeeEEEEeeccCCccccCCCCceEEEeEEEE
Q 012057          313 HYSQACVSNITVRNAIIRESDNGLRIKTWQGGTGCVSDLSFENIQMENVRNCINIDQYYCLSKECLNQTSAVFVTGITYR  392 (472)
Q Consensus       313 ~~~~~~i~nI~i~n~~i~~~~~gi~I~~~~g~~g~v~nI~f~Ni~~~~v~~~i~I~~~~~~~~~~~~~~~~~~i~nI~f~  392 (472)
                         ...++||+|+||++.++.+|++||++ ++.|.|+||+|+||+|+++.+||.|+++|+....+  ..+.+.|+||+|+
T Consensus       230 ---~~~V~nV~v~n~~~~~s~~g~~ik~~-~g~G~V~nI~f~Ni~~~nv~~pI~Id~~y~~~~~~--~~~~v~isnIt~~  303 (422)
T d1rmga_         230 ---DTDVTDIVYRNVYTWSSNQMYMIKSN-GGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAV--AGDGVQLNNITVK  303 (422)
T ss_dssp             ---TEEEEEEEEEEEEEESSSCSEEEEEB-BCCEEEEEEEEEEEEEEEESCSEEEETBCTTSCCB--SSSCCEEEEEEEE
T ss_pred             ---CCCEEEEEEEeEEEeCCCceEEEEEc-CCCceecceEEEEEEEecccccEEEecccCCCCCC--CCCCeEEEEEEEE
Confidence               45799999999999999999999986 45689999999999999999999999999876543  3457899999999


Q ss_pred             eEEEEee--CCCCceEEecCCCCceeeEEEEEEEEEcCCCCccCCceeecceeeeeeeecCCccccCCCCCCc
Q 012057          393 NIKGTYD--VRTPPIHFACSDTVPCTKITMAEVELLPYEGQLLDDPFCWNAYGTQETLTIPPIDCLQEGEPQS  463 (472)
Q Consensus       393 nI~~t~~--~~~~~~~i~~~~~~~~~~i~~~ni~~~~~~~~~~~~~~c~~~~g~~~~~~~~~~~~~~~~~~~~  463 (472)
                      ||+++..  ....++.+.|++..||+||+|+||+|+.+.|..+ ...|+|++|..        +||+++.+-.
T Consensus       304 Ni~GT~~~~~~~~~i~l~Cs~~~pc~ni~l~ni~l~~~~g~~~-~~~C~na~G~~--------~~l~~~~~~~  367 (422)
T d1rmga_         304 NWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSE-LYLCRSAYGSG--------YCLKDSSSHT  367 (422)
T ss_dssp             EEEEEESCTTTSCSEEEECBTTBCEEEEEEEEEEEEESSSSCE-EEEEESEEEES--------TTCBCCSSCC
T ss_pred             eEEEEecCCcccccEEEEcCCCCCCcceEEEEEEEEcCCCCCc-ceEEECceeeE--------EeecCCCCcc
Confidence            9999874  2335899999999999999999999999887654 47999999987        8998876543
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]} Back     information, alignment and structure
>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22 [TaxId: 10754]} Back     information, alignment and structure