Citrus Sinensis ID: 012091

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-
Protein Sequence
MAMNMERSLSLTSLKYQELNWEPHWLNVFSTNADALDLLLIFLQRMNWFAFVSVTLFQEIGLNEKEVDSLLEKNPTLRVTPLDKMRSRILSLQSVGIKGMAFCRLISKDSNVLLAEEIDRLICFVRDDLDGNIEPMKLERLLTSTETKFLVGFDQKVRLLLQLGVPQETILHVLNNINLSKAVCLKSVEDIERTFAYLNPFGGADLIVRCPKILNYDLDTQLIPKVRVLSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRERKLRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECRTRELAAAMGSVTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREVGELLAFPAFLGYKLDDRIKHRYEAKRKTLGDGLSINKLLSVSVERFSTKIKKNPIHS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHcHHHHHHHccccHHHHHHHHHHcccccccccccHHHHHHHHHHccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccHHHHHHHHcccccccccHHHHHHHHHHccccHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccccccccccEEEccccccHHHHHHHHHHHccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHccHHHHHHHHccccHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHcccHHcccHHHHHHHHHHHHHccccHHHHHHHHHHcccEEEEccccccccccHHHHHccccHHHHHHHcccccccHHcccHHHHHHHHHccccHHHHHHHHHHHccccHHHcccHHHHHHHHHHHHHcccHHHHHccccHccccHHHccHHHHHHHHHcccccHHHHHHHHHHccHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHcccEEcccHHHccHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHcHHHHHHHHHHccccHHHHHHHHHHcHHHHcccHHHHHHHHHHccccHHHHHHHHHHccHHHEccHHHHHHHHHHHHHHHcccHHHHHHccHHHcccHHHHccHHHHHHHHHccccccHHHHHcccHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mamnmersLSLTSLKyqelnwephwlnvFSTNADALDLLLIFLQRMNWFAFVSVTLFQEIGLNEKEVDSlleknptlrvtpldkMRSRILSLQSVGIKGMAFCRLISKDSNVLLAEEIDRLICFVrddldgniepmkLERLLTSTETKFLVGFDQKVRLLLQLGVPQETILHVLNNINLSKAVCLKSVEDIERTFAylnpfggadlivrcpkilnydldtqliPKVRVLselggddvdsTAAIVWKFPAILSYSLEHIGKHVEFLrsfaglsdqEIFRIFLVFPAVISASRERKLRPRIDflkqcglgsedIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECRTRELAAAMGSVTRTSCENLQKVIGLFLsyglsfadiyimskkhpqilQYNHKSLEEKMEYLIVGMGREVGELLAFPAFLGYKLDDRIKHRYEAKRKTLGDGLSINKLLSVSVERFstkikknpihs
Flexible Loop (DISEMBL)
mamnmersLSLTSLKYQELNWEPHWLNVFSTNADALDLLLIFLQRMNWFAFVSVTLFQEIGLNEkevdslleknptlrvtpldkmrsRILSLQSVGIKGMAFCRLISKDSNVLLAEEIDRLICFVRDDLDGNIEPMKLERLLTSTETKFLVGFDQKVRLLLQLGVPQETILHVLNNINLSKAVCLKSVEDIERTFAYLNPFGGADLIVRCPKILNYDLDTQLIPKVRVLSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVisasrerklrprIDFLKQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECRTRELAAAMGSVTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREVGELLAFPAFLGYKLDDRIKHRYEAkrktlgdglsinkllsvsverfstkikknpihs
Low Complexity Region (SEG)
MAMNMERSLSLTSLKYQELNWEPHWLNVFSTNADALDLLLIFLQRMNWFAFVSVTLFQEIGLNEKEVDSLLEKNPTLRVTPLDKMRSRILSLQSVGIKGMAFCRLISKDSNVLLAEEIDRLICFVRDDLDGNIEPMKLERLLTSTETKFLVGFDQKVRLLLQLGVPQETILHVLNNINLSKAVCLKSVEDIERTFAYLNPFGGADLIVRCPKILNYDLDTQLIPKVRVLSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRERKLRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECRTRELAAAMGSVTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREVGELLAFPAFLGYKLDDRIKHRYEAKRKTLGDGLSINKLLSVSVERFSTKIKKNPIHS
Disordered region (IsUnstruct)
***********TSLKYQELNWEPHWLNVFSTNADALDLLLIFLQRMNWFAFVSVTLFQEIGLNEKEVDSLLEKNPTLRVTPLDKMRSRILSLQSVGIKGMAFCRLISKDSNVLLAEEIDRLICFVRDDLDGNIEPMKLERLLTSTETKFLVGFDQKVRLLLQLGVPQETILHVLNNINLSKAVCLKSVEDIERTFAYLNPFGGADLIVRCPKILNYDLDTQLIPKVRVLSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRERKLRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECRTRELAAAMGSVTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREVGELLAFPAFLGYKLDDRIKHRYEAKRKTLGDGLSINKLLSVSVE*************
Disordered Region (DISOPRED)
*********SLTSLKYQELNWEPHWLNVFSTNADALDLLLIFLQRMNWFAFVSVTLFQEIGLNEKEVDSLLEKNPTLRVTPLDKMRSRILSLQSVGIKGMAFCRLISKDSNVLLAEEIDRLICFVRDDLDGNIEPMKLERLLTSTETKFLVGFDQKVRLLLQLGVPQETILHVLNNINLSKAVCLKSVEDIERTFAYLNPFGGADLIVRCPKILNYDLDTQLIPKVRVLSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRERKLRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECRTRELAAAMGSVTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREVGELLAFPAFLGYKLDDRIKHRYEAKRKTLGDGLSINKLLSVSVERFSTKIKKNP***
Disordered Region (DISEMBL)
*********SLTSLKYQELNWEPHWLNVFSTNADALDLLLIFLQRMNWFAFVSVTLFQEIGLNEKEVDSLLEKNPTLRVTPLDKMRSRILSLQSVGIKGMAFCRLISKDSNVLLAEEIDRLICFVRDDLDGNIEPMKLERLLTSTETKFLVGFDQKVRLLLQLGVPQETILHVLNNINLSKAVCLKSVEDIERTFAYLNPFGGADLIVRCPKILNYDLDTQLIPKVRVLSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRERKLRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECRTRELAAAMGSVTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREVGELLAFPAFLGYKLDDRIKHRYEAKRKTLGDGLSINKLLSVSVERFSTK********
Disordered Region (DISPRO)
********LSLTSLKYQELNWEPHWLNVFSTNADALDLLLIFLQRMNWFAFVSVTLFQEIGLNEKEVDSLLEKNPTLRVTPLDKMRSRILSLQSVGIKGMAFCRLISKDSNVLLAEEIDRLICFVRDDLDGNIEPMKLERLLTSTETKFLVGFDQKVRLLLQLGVPQETILHVLNNINLSKAVCLKSVEDIERTFAYLNPFGGADLIVRCPKILNYDLDTQLIPKVRVLSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRERKLRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECRTRELAAAMGSVTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREVGELLAFPAFLGYKLDDRIKHRYEAKRKTLGDGLSINKLLSVSVERFSTKIKK*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAMNMERSLSLTSLKYQELNWEPHWLNVFSTNADALDLLLIFLQRMNWFAFVSVTLFQEIGLNEKEVDSLLEKNPTLRVTPLDKMRSRILSLQSVGIKGMAFCRLISKDSNVLLAEEIDRLICFVRDDLDGNIEPMKLERLLTSTETKFLVGFDQKVRLLLQLGVPQETILHVLNNINLSKAVCLKSVEDIERTFAYLNPFGGADLIVRCPKILNYDLDTQLIPKVRVLSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRERKLRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECRTRELAAAMGSVTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREVGELLAFPAFLGYKLDDRIKHRYEAKRKTLGDGLSINKLLSVSVERFSTKIKKNPIHS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	471	2.2.26 [Sep-21-2011]
Q5ZJC8	405	mTERF domain-containing p	yes	no	0.437	0.508	0.245	0.0001

>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus GN=MTERFD1 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 101/220 (45%), Gaps = 14/220 (6%)

Query: 258 IGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRERKLRPRIDFLKQCGLGSEDIFKFLT 317
           I K + FL+   G+ D ++       P ++    E  L  R+ +LK    G+ +I + ++
Sbjct: 176 ITKILLFLKD-VGIEDNQLGPFLTKNPYILGEELE-ALETRVAYLKSKKFGNAEITQMVS 233

Query: 318 KAPLFLALSFDNIAIKLGFLV-KIGYEC-RTRELAAAMGSVTRTSCENLQKVIGLF-LSY 374
           +AP  L  S + +  +LGF   ++G    +T++L      +     E +++ + +  + +
Sbjct: 234 RAPYLLLFSVERLDNRLGFFKNELGLSVKKTKDLVIRFPRLLTGKLEPVKENLQVCQVEF 293

Query: 375 GLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREVGELLAFPAFLGYKLDDRIKH 434
           G    ++  ++ K P+IL  + K L +  +YL   MG     L  FP     KL  RIK 
Sbjct: 294 GFERNEVQQIAFKTPKILTASKKRLRQTFDYLHNIMGIPHNMLTRFPQVFNSKL-LRIKE 352

Query: 435 RY--------EAKRKTLGDGLSINKLLSVSVERFSTKIKK 466
           R+             T    +S+++L+S+  E F T+I K
Sbjct: 353 RHMFLIFLGRAQYDPTKPSYISLDQLVSLPDEVFCTEIAK 392

Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.
Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	471
359490831	985	PREDICTED: uncharacterized protein LOC10	0.885	0.423	0.665	1e-158
147852084	478	hypothetical protein VITISV_018393 [Viti	0.878	0.866	0.656	1e-156
302143980	1884	unnamed protein product [Vitis vinifera]	0.855	0.213	0.665	1e-153
255549639	454	conserved hypothetical protein [Ricinus	0.874	0.907	0.648	1e-152
224132612	517	predicted protein [Populus trichocarpa]	0.881	0.802	0.640	1e-150
15239573	500	plastid transcriptionally active 15 prot	0.864	0.814	0.592	1e-134
297792853	500	PTAC15 [Arabidopsis lyrata subsp. lyrata	0.864	0.814	0.589	1e-134
21593780	500	unknown [Arabidopsis thaliana]	0.864	0.814	0.589	1e-134
357464197	506	hypothetical protein MTR_3g092710 [Medic	0.893	0.832	0.559	1e-133
356507548	498	PREDICTED: uncharacterized protein LOC10	0.876	0.829	0.550	1e-128

>gi|359490831|ref|XP_003634173.1| PREDICTED: uncharacterized protein LOC100853133 [Vitis vinifera]

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 278/418 (66%), Positives = 335/418 (80%), Gaps = 1/418 (0%)

Query: 55  TLFQEIGLNEKEVDSLLEKNPTLRVTPLDKMRSRILSLQSVGIKGMAFCRLISKDSNVLL 114
           +LFQ +G++E+EV+ LL KNP LR+   D +  R+ SL+S+GI G+A   LI+K  +VL 
Sbjct: 559 SLFQGLGVDEREVELLLNKNPALRLASFDCVHERVCSLESLGINGVALYSLITKCPDVLT 618

Query: 115 AEEIDRLICFVRDDLDGNIEPMKLERLLTSTETKFLVGFDQKVRLLLQLGVPQETILHVL 174
           A EID LI F+RDDL+G IEP ++ RLL + E +FLVGFD KVRLL+  G+PQE I HVL
Sbjct: 619 APEIDPLISFIRDDLEGKIEPAQICRLLKAAEPRFLVGFDGKVRLLVHHGIPQERIAHVL 678

Query: 175 NNINLSKAVCLKSVEDIERTFAYLNPFGGADLIVRCPKILNYDLDTQLIPKVRVLSELGG 234
           NN+NL++A+CLKS E+IE+TF +L+ FG  D+I++ P ILNYDL++QLIP+VRVL EL G
Sbjct: 679 NNVNLTRAICLKSAEEIEKTFTFLSRFGAVDIIIKRPAILNYDLESQLIPRVRVLVELSG 738

Query: 235 DDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRERK 294
            D  +T  ++ K PAIL YS EH+G HVEFLRSFAGLSDQEIF+I  VFP V SAS+ERK
Sbjct: 739 GDDAATGVVLRKLPAILRYSEEHLGGHVEFLRSFAGLSDQEIFKIVCVFPNVFSASKERK 798

Query: 295 LRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSF-DNIAIKLGFLVKIGYECRTRELAAAM 353
           L PRIDFLKQCGL S DIF+FL KAPLFL LSF +N+  KL  LVKIGY+ RTRELA AM
Sbjct: 799 LNPRIDFLKQCGLNSYDIFRFLIKAPLFLGLSFEENLVHKLSLLVKIGYQYRTRELAIAM 858

Query: 354 GSVTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGRE 413
           G+VTRTSCENLQKVIGLFLSYGLS  DI  MS KHPQILQYN  SL+EK+EYLI  MGRE
Sbjct: 859 GAVTRTSCENLQKVIGLFLSYGLSCEDIVAMSNKHPQILQYNPTSLKEKIEYLIEDMGRE 918

Query: 414 VGELLAFPAFLGYKLDDRIKHRYEAKRKTLGDGLSINKLLSVSVERFSTKIKKNPIHS 471
           V ELLAFPAFLGYKLDDRIKHRYE K+K +G+G+S+NKLLSVS ERFS + KK+P H+
Sbjct: 919 VDELLAFPAFLGYKLDDRIKHRYEVKKKIIGEGMSLNKLLSVSTERFSRRKKKDPAHT 976

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852084|emb|CAN80174.1| hypothetical protein VITISV_018393 [Vitis vinifera]

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 275/419 (65%), Positives = 331/419 (78%), Gaps = 5/419 (1%)

Query: 47  NWFAFVSV----TLFQEIGLNEKEVDSLLEKNPTLRVTPLDKMRSRILSLQSVGIKGMAF 102
           NW + ++     +LFQ +G++E+EV  LL KNP LR+   D +  R+ SL+S+GI G+A 
Sbjct: 48  NWVSVINARSLFSLFQGLGVDEREVXLLLNKNPALRLASFDCVHERVCSLESLGINGVAL 107

Query: 103 CRLISKDSNVLLAEEIDRLICFVRDDLDGNIEPMKLERLLTSTETKFLVGFDQKVRLLLQ 162
             LI+K  +VL A EID LI F+RDDL+G IEP ++ RLL + E +FLVGFD KVRLL+ 
Sbjct: 108 YSLITKCPDVLTAPEIDPLISFIRDDLEGKIEPAQICRLLKAAEPRFLVGFDGKVRLLVH 167

Query: 163 LGVPQETILHVLNNINLSKAVCLKSVEDIERTFAYLNPFGGADLIVRCPKILNYDLDTQL 222
            G+PQE I HVLNN+NL++A+CLKS E+IE+TF +L+ FG  D+I++ P ILNYDL++QL
Sbjct: 168 HGIPQERIAHVLNNVNLTRAICLKSAEEIEKTFTFLSRFGAVDIIIKRPAILNYDLESQL 227

Query: 223 IPKVRVLSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLV 282
           IP+VRVL EL G D  +T  ++ K PAIL YS EH+G HVEFLRSFAGLSDQEIF+I  V
Sbjct: 228 IPRVRVLVELSGGDDAATGVVLRKLPAILRYSEEHLGSHVEFLRSFAGLSDQEIFKIVCV 287

Query: 283 FPAVISASRERKLRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSF-DNIAIKLGFLVKIG 341
           FP V SAS+ERKL PRIDFLKQCGL S DIF+FL KAPLFL LSF +N+  KL  LVKIG
Sbjct: 288 FPNVFSASKERKLNPRIDFLKQCGLNSYDIFRFLIKAPLFLGLSFEENLVYKLSLLVKIG 347

Query: 342 YECRTRELAAAMGSVTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEE 401
           Y+ RTRELA AMG+VTRTSCENLQKVIGLFLSYGLS  DI  MS KHPQILQYN  SL+E
Sbjct: 348 YQYRTRELAIAMGAVTRTSCENLQKVIGLFLSYGLSCEDIVAMSNKHPQILQYNPTSLKE 407

Query: 402 KMEYLIVGMGREVGELLAFPAFLGYKLDDRIKHRYEAKRKTLGDGLSINKLLSVSVERF 460
           K+EYLI  MGREV ELLAFPAFLGYKLDDRIKHRYE K+K +G+G+S+NKLLSVS ERF
Sbjct: 408 KIEYLIEDMGREVDELLAFPAFLGYKLDDRIKHRYEVKKKIIGEGMSLNKLLSVSTERF 466

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143980|emb|CBI23085.3| unnamed protein product [Vitis vinifera]

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 269/404 (66%), Positives = 324/404 (80%), Gaps = 1/404 (0%)

Query: 55  TLFQEIGLNEKEVDSLLEKNPTLRVTPLDKMRSRILSLQSVGIKGMAFCRLISKDSNVLL 114
           +LFQ +G++E+EV+ LL KNP LR+   D +  R+ SL+S+GI G+A   LI+K  +VL 
Sbjct: 92  SLFQGLGVDEREVELLLNKNPALRLASFDCVHERVCSLESLGINGVALYSLITKCPDVLT 151

Query: 115 AEEIDRLICFVRDDLDGNIEPMKLERLLTSTETKFLVGFDQKVRLLLQLGVPQETILHVL 174
           A EID LI F+RDDL+G IEP ++ RLL + E +FLVGFD KVRLL+  G+PQE I HVL
Sbjct: 152 APEIDPLISFIRDDLEGKIEPAQICRLLKAAEPRFLVGFDGKVRLLVHHGIPQERIAHVL 211

Query: 175 NNINLSKAVCLKSVEDIERTFAYLNPFGGADLIVRCPKILNYDLDTQLIPKVRVLSELGG 234
           NN+NL++A+CLKS E+IE+TF +L+ FG  D+I++ P ILNYDL++QLIP+VRVL EL G
Sbjct: 212 NNVNLTRAICLKSAEEIEKTFTFLSRFGAVDIIIKRPAILNYDLESQLIPRVRVLVELSG 271

Query: 235 DDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRERK 294
            D  +T  ++ K PAIL YS EH+G HVEFLRSFAGLSDQEIF+I  VFP V SAS+ERK
Sbjct: 272 GDDAATGVVLRKLPAILRYSEEHLGGHVEFLRSFAGLSDQEIFKIVCVFPNVFSASKERK 331

Query: 295 LRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSF-DNIAIKLGFLVKIGYECRTRELAAAM 353
           L PRIDFLKQCGL S DIF+FL KAPLFL LSF +N+  KL  LVKIGY+ RTRELA AM
Sbjct: 332 LNPRIDFLKQCGLNSYDIFRFLIKAPLFLGLSFEENLVHKLSLLVKIGYQYRTRELAIAM 391

Query: 354 GSVTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGRE 413
           G+VTRTSCENLQKVIGLFLSYGLS  DI  MS KHPQILQYN  SL+EK+EYLI  MGRE
Sbjct: 392 GAVTRTSCENLQKVIGLFLSYGLSCEDIVAMSNKHPQILQYNPTSLKEKIEYLIEDMGRE 451

Query: 414 VGELLAFPAFLGYKLDDRIKHRYEAKRKTLGDGLSINKLLSVSV 457
           V ELLAFPAFLGYKLDDRIKHRYE K+K +G+G+S+NKLLSV +
Sbjct: 452 VDELLAFPAFLGYKLDDRIKHRYEVKKKIIGEGMSLNKLLSVYI 495

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549639|ref|XP_002515871.1| conserved hypothetical protein [Ricinus communis] gi|223545026|gb|EEF46540.1| conserved hypothetical protein [Ricinus communis]

 Score =  546 bits (1406), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 268/413 (64%), Positives = 333/413 (80%), Gaps = 1/413 (0%)

Query: 55  TLFQEIGLNEKEVDSLLEKNPTLRVTPLDKMRSRILSLQSVGIKGMAFCRLISKDSNVLL 114
           + F+E GLNEKE + +LE+NP+L +T  D +RSR+  L+SVG+KG    RLI K  +VL 
Sbjct: 34  SFFREFGLNEKETEFILEQNPSLTLTAFDSIRSRVFLLESVGLKGAELYRLIIKCPDVLT 93

Query: 115 AEEIDRLICFVRDDLDGNIEPMKLERLLTSTETKFLVGFDQKVRLLLQLGVPQETILHVL 174
           AE+I   + FV ++L G IEP +++RL +++E +FLVGFDQKV +LL  GVP+E I+H+L
Sbjct: 94  AEQIHPFLHFVLNNLQGRIEPAQIKRLFSASEPRFLVGFDQKVTMLLSHGVPEEKIVHIL 153

Query: 175 NNINLSKAVCLKSVEDIERTFAYLNPFGGADLIVRCPKILNYDLDTQLIPKVRVLSELGG 234
           NNINL KA+CLKSV++I+RT ++L+ FGG D+IVR P ILN+DLD QLIP+V  L E+ G
Sbjct: 154 NNINLLKAMCLKSVKEIDRTISFLSRFGGIDIIVRRPMILNFDLDRQLIPRVEFLKEISG 213

Query: 235 DDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRERK 294
            D ++T  ++ K PAILSYSLEHI  HVE LRSF GL+D +IF+IFLVFP VISAS+ERK
Sbjct: 214 GDEEATGTLLRKLPAILSYSLEHIKGHVELLRSFGGLTDPQIFKIFLVFPNVISASKERK 273

Query: 295 LRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSFD-NIAIKLGFLVKIGYECRTRELAAAM 353
           LRPRI+FLKQCGL S++IFKFLTKAPLFL LSF+ N+  K+ FLVKIGY  R +EL  A+
Sbjct: 274 LRPRIEFLKQCGLNSDEIFKFLTKAPLFLGLSFEYNLVHKIVFLVKIGYGYRNKELTVAL 333

Query: 354 GSVTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGRE 413
           G+VTRTSC+NLQKVI LF SYG S  DI  MSKKHPQILQY++ SL+EKMEYLI GMGRE
Sbjct: 334 GAVTRTSCDNLQKVIELFFSYGFSSPDILSMSKKHPQILQYSYSSLQEKMEYLIEGMGRE 393

Query: 414 VGELLAFPAFLGYKLDDRIKHRYEAKRKTLGDGLSINKLLSVSVERFSTKIKK 466
           VGELLAFPAFLGYKLDDRIKHRYE KRK +G+G+S+NKLLSVS +RFS + KK
Sbjct: 394 VGELLAFPAFLGYKLDDRIKHRYEVKRKVIGEGMSLNKLLSVSADRFSVEKKK 446

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132612|ref|XP_002321365.1| predicted protein [Populus trichocarpa] gi|222868361|gb|EEF05492.1| predicted protein [Populus trichocarpa]

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 267/417 (64%), Positives = 329/417 (78%), Gaps = 2/417 (0%)

Query: 55  TLFQEIGLNEKEVDSLLEKNPTLRVTPLDKMRSRILSLQSVGIKGMAFCRLISKDSNVLL 114
           + F E+G NEKE   LLE+NP L+    D +R  +L L+SVGIKG     LI K  +VL 
Sbjct: 89  SFFAEMGFNEKETGLLLEQNPALKSASFDSIRVHVLLLESVGIKGAELYHLIDKSPDVLT 148

Query: 115 AEEIDRLICFVRDDLDGNIEPMKLERLLTSTETKFLVGFDQKVRLLLQLGVPQETILHVL 174
           A+EI  LI FV +DL+G +EP +L RLL +T  +FL GFD+KV+LL++ G+PQE I+HVL
Sbjct: 149 AKEIVPLIHFVLNDLEGKVEPAQLRRLLIATVPRFLAGFDEKVKLLIKRGIPQEKIVHVL 208

Query: 175 NNINLSKAVCLKSVEDIERTFAYLNPFGGADLIVRCPKILNYDLDTQLIPKVRVLSELGG 234
           NN+NL+KA+ LKS+E+IE+T  YL+ FGG DLIVR P ILN+DLDTQLIP+V +L E+ G
Sbjct: 209 NNVNLTKALSLKSIEEIEKTVTYLSRFGGVDLIVRRPMILNFDLDTQLIPRVELLKEISG 268

Query: 235 DDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRERK 294
            D D+T  ++ K PAILSYS++H G HVE LRSFAGL+D +IF+IF VFP V+SAS+ERK
Sbjct: 269 GDEDATGIVLHKLPAILSYSVKHTGGHVELLRSFAGLTDPQIFKIFSVFPNVVSASKERK 328

Query: 295 LRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSF-DNIAIKLGFLVKIGYECRTRELAAAM 353
           LRPRI+FLKQCGL S++IFKFLTKAP+FL LSF DN+  KL  LVKIGYE  T+ELAAAM
Sbjct: 329 LRPRIEFLKQCGLSSDEIFKFLTKAPVFLGLSFEDNLVHKLVVLVKIGYENETKELAAAM 388

Query: 354 GSVTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGRE 413
           G+ +RTSCENLQ VIGLFLSYGL++ADI  MSKKHPQILQY   +LEEK+E+LI  MGR 
Sbjct: 389 GAASRTSCENLQNVIGLFLSYGLTYADILAMSKKHPQILQYKCGALEEKLEFLIEEMGRG 448

Query: 414 VGELLAFPAFLGYKLDDRIKHRYEAKRKTLGDGLSINKLLSVSVERF-STKIKKNPI 469
           V ELL+FPAFLGY LD+RIKHRYE K+ T G+G+SINKLLSVS +RF + K KK PI
Sbjct: 449 VRELLSFPAFLGYNLDERIKHRYEVKKLTTGEGMSINKLLSVSDDRFLNQKQKKKPI 505

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239573|ref|NP_200229.1| plastid transcriptionally active 15 protein [Arabidopsis thaliana] gi|10178167|dbj|BAB11580.1| unnamed protein product [Arabidopsis thaliana] gi|19698993|gb|AAL91232.1| unknown protein [Arabidopsis thaliana] gi|23198092|gb|AAN15573.1| unknown protein [Arabidopsis thaliana] gi|332009080|gb|AED96463.1| plastid transcriptionally active 15 protein [Arabidopsis thaliana]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 241/407 (59%), Positives = 314/407 (77%)

Query: 55  TLFQEIGLNEKEVDSLLEKNPTLRVTPLDKMRSRILSLQSVGIKGMAFCRLISKDSNVLL 114
           +LF++IG  E+E + +L KNP ++ T LDK+ +R+ SLQS+ I G     LI+K  N+L 
Sbjct: 83  SLFRDIGFIEEETEMILAKNPDIKSTSLDKIGARVASLQSLKINGFPLQGLIAKCPNLLT 142

Query: 115 AEEIDRLICFVRDDLDGNIEPMKLERLLTSTETKFLVGFDQKVRLLLQLGVPQETILHVL 174
           +EE D +I F+ D+L+G ++P  +ERLL+  +T  L+ F+QKVRLLL  G+P+E I HVL
Sbjct: 143 SEEFDLVISFLVDELEGRLDPELVERLLSVVDTSILLSFNQKVRLLLLHGIPKEKISHVL 202

Query: 175 NNINLSKAVCLKSVEDIERTFAYLNPFGGADLIVRCPKILNYDLDTQLIPKVRVLSELGG 234
           N + L+K +  KSVEDIER  ++L PFGG  +I R P ILN DLD+QLIP+V  +  L G
Sbjct: 203 NKVYLNKLLYQKSVEDIERLISFLEPFGGIGIIARRPVILNSDLDSQLIPRVDFIRNLSG 262

Query: 235 DDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRERK 294
           +D  +T  ++ + PAILSYS+EH+   VEFL+SFAGL+ +++F+I  VFP VIS S+ERK
Sbjct: 263 EDDFATGTVLRRLPAILSYSVEHMNGQVEFLKSFAGLTSEQVFKIVHVFPNVISTSKERK 322

Query: 295 LRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECRTRELAAAMG 354
           LRPRI+FLK+CG  S  +FKFL+KAPL LALS +N++ KLGFLVKIGY+ RT+ELA AMG
Sbjct: 323 LRPRIEFLKECGFDSPGMFKFLSKAPLILALSENNLSHKLGFLVKIGYKHRTKELAFAMG 382

Query: 355 SVTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREV 414
           +VTRTS +N+Q+VIGL+LSYGLSF DI  MS KHPQ+LQYN+ SLEEK+EYLI  MGREV
Sbjct: 383 AVTRTSSDNMQRVIGLYLSYGLSFEDILAMSTKHPQVLQYNYTSLEEKLEYLIEYMGREV 442

Query: 415 GELLAFPAFLGYKLDDRIKHRYEAKRKTLGDGLSINKLLSVSVERFS 461
            ELLAFPAFLGYKLD RIKHRYE K K+ G+ +S+NKLL+VS ERFS
Sbjct: 443 EELLAFPAFLGYKLDSRIKHRYEEKLKSRGENMSLNKLLTVSAERFS 489

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792853|ref|XP_002864311.1| PTAC15 [Arabidopsis lyrata subsp. lyrata] gi|297310146|gb|EFH40570.1| PTAC15 [Arabidopsis lyrata subsp. lyrata]

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 240/407 (58%), Positives = 313/407 (76%)

Query: 55  TLFQEIGLNEKEVDSLLEKNPTLRVTPLDKMRSRILSLQSVGIKGMAFCRLISKDSNVLL 114
           +LF++IG  E+E + +L KNP ++   LDK+ +R+ SLQS+ I G A   LI+K   +L 
Sbjct: 83  SLFRDIGFIEEETEMILAKNPDIKSASLDKIGARVASLQSLKIDGFALQGLIAKCPTLLT 142

Query: 115 AEEIDRLICFVRDDLDGNIEPMKLERLLTSTETKFLVGFDQKVRLLLQLGVPQETILHVL 174
           +EE D +I F+ D+L+  ++P  +ERLL+  +T  L+ F+QKVRLLL  G+P+E I HVL
Sbjct: 143 SEEFDPIISFLVDELEARLDPELVERLLSVVDTSILLSFNQKVRLLLLHGIPKEKISHVL 202

Query: 175 NNINLSKAVCLKSVEDIERTFAYLNPFGGADLIVRCPKILNYDLDTQLIPKVRVLSELGG 234
           N + L+K +  KSVEDIER  +++ PFGG  +I R P ILN DLD+QLIP+V  +  L G
Sbjct: 203 NKVYLNKLLYQKSVEDIERLISFMEPFGGIGIIARRPVILNSDLDSQLIPRVDFIRNLSG 262

Query: 235 DDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRERK 294
           +D  +T  ++ + PAILSYS+EH+  HVEFL+SFAGL+ +++F+I  VFP VIS S+ERK
Sbjct: 263 EDDFATGTVLRRLPAILSYSVEHMNSHVEFLKSFAGLTSEQVFKIVHVFPNVISTSKERK 322

Query: 295 LRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECRTRELAAAMG 354
           LRPRI+FLK+CG  S  +FKFL+KAPL LALS DN++ KLGFLVKIGY+ RT+ELA AMG
Sbjct: 323 LRPRIEFLKECGFDSPGMFKFLSKAPLILALSEDNLSHKLGFLVKIGYKHRTKELAFAMG 382

Query: 355 SVTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREV 414
           +VTRTS +N+Q+VIGL+LSYGLSF DI  MS KHPQ+LQYN+ SLEEK+EYLI  MGREV
Sbjct: 383 AVTRTSSDNMQRVIGLYLSYGLSFEDILAMSTKHPQVLQYNYSSLEEKLEYLIEYMGREV 442

Query: 415 GELLAFPAFLGYKLDDRIKHRYEAKRKTLGDGLSINKLLSVSVERFS 461
            ELLAFPAFLGYKLD RIKHRYE K K+ G+ +S+NKLL+VS ERFS
Sbjct: 443 EELLAFPAFLGYKLDSRIKHRYEEKLKSRGENMSLNKLLTVSDERFS 489

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593780|gb|AAM65747.1| unknown [Arabidopsis thaliana]

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 240/407 (58%), Positives = 314/407 (77%)

Query: 55  TLFQEIGLNEKEVDSLLEKNPTLRVTPLDKMRSRILSLQSVGIKGMAFCRLISKDSNVLL 114
           +LF++IG  E+E + +L KNP ++ T LDK+ +R+ SLQS+ I G     LI+K  N+L 
Sbjct: 83  SLFRDIGFIEEETEMILAKNPDIKSTSLDKIGARVASLQSLKINGFPLQGLIAKCPNLLT 142

Query: 115 AEEIDRLICFVRDDLDGNIEPMKLERLLTSTETKFLVGFDQKVRLLLQLGVPQETILHVL 174
           +EE D +I F+ D+L+G ++P  +ERLL+  +T  L+ F+QKVRLLL  G+P+E I HVL
Sbjct: 143 SEEFDLVISFLVDELEGRLDPELVERLLSVVDTSILLSFNQKVRLLLLHGIPKEKISHVL 202

Query: 175 NNINLSKAVCLKSVEDIERTFAYLNPFGGADLIVRCPKILNYDLDTQLIPKVRVLSELGG 234
           N + L+K +  KSVEDIER  ++L PFGG  +I R P ILN DLD+QLIP+V  +  L G
Sbjct: 203 NKVYLNKLLYQKSVEDIERLISFLEPFGGIGIIARRPVILNSDLDSQLIPRVDFIRNLSG 262

Query: 235 DDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRERK 294
           ++  +T  ++ + PAILSYS+EH+   VEFL+SFAGL+ +++F+I  VFP VIS S+ERK
Sbjct: 263 ENDFATGTVLRRLPAILSYSVEHMNGQVEFLKSFAGLTSEQVFKIVHVFPNVISTSKERK 322

Query: 295 LRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECRTRELAAAMG 354
           LRPRI+FLK+CG  S  +FKFL+KAPL LALS +N++ KLGFLVKIGY+ RT+ELA AMG
Sbjct: 323 LRPRIEFLKECGFDSPGMFKFLSKAPLILALSENNLSHKLGFLVKIGYKHRTKELAFAMG 382

Query: 355 SVTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREV 414
           +VTRTS +N+Q+VIGL+LSYGLSF DI  MS KHPQ+LQYN+ SLEEK+EYLI  MGREV
Sbjct: 383 AVTRTSSDNMQRVIGLYLSYGLSFEDILAMSTKHPQVLQYNYTSLEEKLEYLIEYMGREV 442

Query: 415 GELLAFPAFLGYKLDDRIKHRYEAKRKTLGDGLSINKLLSVSVERFS 461
            ELLAFPAFLGYKLD RIKHRYE K K+ G+ +S+NKLL+VS ERFS
Sbjct: 443 EELLAFPAFLGYKLDSRIKHRYEEKLKSRGENMSLNKLLTVSAERFS 489

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464197|ref|XP_003602380.1| hypothetical protein MTR_3g092710 [Medicago truncatula] gi|355491428|gb|AES72631.1| hypothetical protein MTR_3g092710 [Medicago truncatula]

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 236/422 (55%), Positives = 317/422 (75%), Gaps = 1/422 (0%)

Query: 46  MNWFAFVSVTLFQEIGLNEKEVDSLLEKNPTLRVTPLDKMRSRILSLQSVGIKGMAFCRL 105
           +N +    V+LF+EIG++ K+ + LL   P L   PLD +R R+ SL S+G+  ++   L
Sbjct: 76  VNTYIGTLVSLFEEIGISFKQTELLLLNAPELNSIPLDSLRDRVFSLYSLGLDRVSINHL 135

Query: 106 ISKDSNVLLAEEIDRLICFVRDDLDGNIEPMKLERLLTSTETKFLVGFDQKVRLLLQLGV 165
           +++   VL A EID L+ F+R++L G +E  KL+RLL + ETK L GF QKVRLL+  G+
Sbjct: 136 VTERLTVLTANEIDPLLSFLRNELQGQLEKSKLKRLLLANETKNLSGFPQKVRLLVDSGI 195

Query: 166 PQETILHVLNNINLSKAVCLKSVEDIERTFAYLNPFGGADLIVRCPKILNYDLDTQLIPK 225
           P + I+HVLN +NLSKA+C +S+++IER   +L PFGG  LIV+ P ILN DL  QLIP+
Sbjct: 196 PVDKIVHVLNKVNLSKAICHRSIDEIERIIDFLKPFGGIHLIVKHPVILNCDLHNQLIPR 255

Query: 226 VRVLSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPA 285
           +RVL+ L G D DS   ++ +FP IL+YS+EH+ +H++FLR FA L DQ+IF+I LVFPA
Sbjct: 256 IRVLTALSGGDEDSIGKVLNRFPIILNYSVEHLEEHIKFLRCFADLDDQQIFKIVLVFPA 315

Query: 286 VISASRERKLRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSF-DNIAIKLGFLVKIGYEC 344
           + ++SRERKLRPRI FLK+CGL +++IFK LTKA LFL++SF  N+A KLG LVKIGY+ 
Sbjct: 316 IFTSSRERKLRPRIQFLKECGLDADEIFKLLTKAALFLSISFRSNLAYKLGVLVKIGYKY 375

Query: 345 RTRELAAAMGSVTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKME 404
           RT+ELA A+ + TR SCEN+QK++ LFL+YG S  DI+ MSKKHPQILQY+H SLE+KM+
Sbjct: 376 RTKELAVAIAASTRISCENMQKMVSLFLNYGFSLEDIFAMSKKHPQILQYHHASLEKKMD 435

Query: 405 YLIVGMGREVGELLAFPAFLGYKLDDRIKHRYEAKRKTLGDGLSINKLLSVSVERFSTKI 464
           Y+I  M R++ ELL FPA+LGYKLDDRIKHRYE K+   G+ +SINKLL+VS E F+ K 
Sbjct: 436 YMIEEMNRDIQELLDFPAYLGYKLDDRIKHRYEIKKDLRGEQMSINKLLTVSSENFTGKR 495

Query: 465 KK 466
           KK
Sbjct: 496 KK 497

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507548|ref|XP_003522526.1| PREDICTED: uncharacterized protein LOC100799904 [Glycine max]

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 228/414 (55%), Positives = 304/414 (73%), Gaps = 1/414 (0%)

Query: 54  VTLFQEIGLNEKEVDSLLEKNPTLRVTPLDKMRSRILSLQSVGIKGMAFCRLISKDSNVL 113
           + LFQ+IG+  +E   LL  N  L   P+D +  R LSL+S+G   +  C+L++K   +L
Sbjct: 82  IALFQDIGIGFEETQVLLCNNHDLASVPIDSLHVRFLSLRSLGFDPLTLCKLVTKRPTIL 141

Query: 114 LAEEIDRLICFVRDDLDGNIEPMKLERLLTSTETKFLVGFDQKVRLLLQLGVPQETILHV 173
            A EID L+ F+RD+L G +E  +L RLL+STE +FL  F QKV+ L+  G+P + ++HV
Sbjct: 142 TANEIDPLLTFLRDNLQGKLEKQQLNRLLSSTEQEFLESFPQKVQFLVDRGIPVDQVVHV 201

Query: 174 LNNINLSKAVCLKSVEDIERTFAYLNPFGGADLIVRCPKILNYDLDTQLIPKVRVLSELG 233
           LN +NLSK +C +S+E+I+RT ++L PFGG  LI++ P+ILN+DLDTQ++P+V+ L EL 
Sbjct: 202 LNKVNLSKVLCRRSLEEIDRTISFLEPFGGIALILKRPQILNHDLDTQIVPRVKFLMELS 261

Query: 234 GDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRER 293
             D DS   ++ +FP  L+YS+ H+ +HV FL SFA    ++IFRI  V+PA+++ SRER
Sbjct: 262 DGDEDSVGKVLLRFPIFLNYSVAHVEEHVGFLSSFAEFDYKQIFRIIQVYPAIVTTSRER 321

Query: 294 KLRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSF-DNIAIKLGFLVKIGYECRTRELAAA 352
           KLRPRI FLK+CGL S++IFKFL K P FL++SF +NIA KL  LVKIGY  R+++LA A
Sbjct: 322 KLRPRIQFLKECGLDSDEIFKFLIKGPTFLSISFNENIAYKLVLLVKIGYRYRSKDLAMA 381

Query: 353 MGSVTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGR 412
           + S TRT+C N+QKVI LFL+YG S  DI  MSKK PQILQYNH SLE+KMEYLI  MGR
Sbjct: 382 IRSATRTNCGNMQKVISLFLNYGFSCEDIVAMSKKQPQILQYNHTSLEKKMEYLIEEMGR 441

Query: 413 EVGELLAFPAFLGYKLDDRIKHRYEAKRKTLGDGLSINKLLSVSVERFSTKIKK 466
           ++ ELL FPAFLGYKLDDRIKHR+E K+   G G+SINKLL+VS E F+ K KK
Sbjct: 442 DIEELLLFPAFLGYKLDDRIKHRFEVKKLVRGRGMSINKLLTVSEETFAGKRKK 495

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	471
TAIR|locus:2153433	500	PTAC15 "AT5G54180" [Arabidopsi	0.864	0.814	0.592	1.3e-123
TAIR|locus:505006461	493	MDA1 "AT4G14605" [Arabidopsis	0.513	0.490	0.307	5.7e-17
TAIR|locus:2037338	445	AT1G74120 "AT1G74120" [Arabido	0.486	0.514	0.285	1.3e-14
TAIR|locus:2049329	641	EMB2219 "embryo defective 2219	0.532	0.391	0.251	1e-12
TAIR|locus:2039240	333	EMB3114 "AT2G36000" [Arabidops	0.452	0.639	0.283	3.8e-11
TAIR|locus:2056745	283	EMB93 "EMBRYO DEFECTIVE 93" [A	0.439	0.731	0.269	5.1e-11
TAIR|locus:2172798	457	AT5G23930 "AT5G23930" [Arabido	0.573	0.590	0.237	9e-10
TAIR|locus:2051814	507	AT2G44020 "AT2G44020" [Arabido	0.547	0.508	0.239	2.4e-09
TAIR|locus:1006230704	461	AT1G62085 "AT1G62085" [Arabido	0.588	0.600	0.247	4.2e-09
TAIR|locus:2102827	450	AT3G46950 "AT3G46950" [Arabido	0.624	0.653	0.215	8.7e-09

TAIR|locus:2153433 PTAC15 "AT5G54180" [Arabidopsis thaliana (taxid:3702)]

 Score = 1215 (432.8 bits), Expect = 1.3e-123, P = 1.3e-123
 Identities = 241/407 (59%), Positives = 314/407 (77%)

Query:    55 TLFQEIGLNEKEVDSLLEKNPTLRVTPLDKMRSRILSLQSVGIKGMAFCRLISKDSNVLL 114
             +LF++IG  E+E + +L KNP ++ T LDK+ +R+ SLQS+ I G     LI+K  N+L 
Sbjct:    83 SLFRDIGFIEEETEMILAKNPDIKSTSLDKIGARVASLQSLKINGFPLQGLIAKCPNLLT 142

Query:   115 AEEIDRLICFVRDDLDGNIEPMKLERLLTSTETKFLVGFDQKVRLLLQLGVPQETILHVL 174
             +EE D +I F+ D+L+G ++P  +ERLL+  +T  L+ F+QKVRLLL  G+P+E I HVL
Sbjct:   143 SEEFDLVISFLVDELEGRLDPELVERLLSVVDTSILLSFNQKVRLLLLHGIPKEKISHVL 202

Query:   175 NNINLSKAVCLKSVEDIERTFAYLNPFGGADLIVRCPKILNYDLDTQLIPKVRVLSELGG 234
             N + L+K +  KSVEDIER  ++L PFGG  +I R P ILN DLD+QLIP+V  +  L G
Sbjct:   203 NKVYLNKLLYQKSVEDIERLISFLEPFGGIGIIARRPVILNSDLDSQLIPRVDFIRNLSG 262

Query:   235 DDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRERK 294
             +D  +T  ++ + PAILSYS+EH+   VEFL+SFAGL+ +++F+I  VFP VIS S+ERK
Sbjct:   263 EDDFATGTVLRRLPAILSYSVEHMNGQVEFLKSFAGLTSEQVFKIVHVFPNVISTSKERK 322

Query:   295 LRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECRTRELAAAMG 354
             LRPRI+FLK+CG  S  +FKFL+KAPL LALS +N++ KLGFLVKIGY+ RT+ELA AMG
Sbjct:   323 LRPRIEFLKECGFDSPGMFKFLSKAPLILALSENNLSHKLGFLVKIGYKHRTKELAFAMG 382

Query:   355 SVTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREV 414
             +VTRTS +N+Q+VIGL+LSYGLSF DI  MS KHPQ+LQYN+ SLEEK+EYLI  MGREV
Sbjct:   383 AVTRTSSDNMQRVIGLYLSYGLSFEDILAMSTKHPQVLQYNYTSLEEKLEYLIEYMGREV 442

Query:   415 GELLAFPAFLGYKLDDRIKHRYEAKRKTLGDGLSINKLLSVSVERFS 461
              ELLAFPAFLGYKLD RIKHRYE K K+ G+ +S+NKLL+VS ERFS
Sbjct:   443 EELLAFPAFLGYKLDSRIKHRYEEKLKSRGENMSLNKLLTVSAERFS 489

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009295 "nucleoid" evidence=IDA

GO:0009508 "plastid chromosome" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:505006461 MDA1 "AT4G14605" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 5.7e-17, P = 5.7e-17
 Identities = 79/257 (30%), Positives = 130/257 (50%)

Query:   216 YDLDTQLIPKVRVLSELGGDDVDSTAAIVWKFPAILSYSL-EHIGKHVEFLRSFAGLSDQ 274
             Y LD ++ P V  L +LG    D    I+ K P I   SL +++   + FL +  G+   
Sbjct:   226 YSLDGKIKPVVEFLLDLGIPKSD-IPTILCKRPQICGISLTDNLKPTMAFLETL-GIDKN 283

Query:   275 EIFRIFLVFPAVISASRERKLRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSFDNIAIKL 334
             +  +I   FPA+++ SR+ KL   ++FL Q GL  E I + LT+ P  ++ S ++   KL
Sbjct:   284 QWAKIISRFPAILTYSRQ-KLTSTVEFLSQTGLTEEQIGRILTRCPNIMSYSVED---KL 339

Query:   335 GFLVKIGYECRTRELAAAMGSVTRT---SCE-NLQKVIGLFLSYGLSFADIYIMSKKHPQ 390
                ++  +     ++A  +    +T   S E NL+ V   FL  G    +I IM  ++  
Sbjct:   340 RPTMEY-FRSLNVDVAVLLHRCPQTFGLSIESNLKPVTEFFLEKGFGLDEIGIMISRYGA 398

Query:   391 ILQYNHK-SLEEKMEYLIVGMGREVGELLAFPAFLGYKLDDRIKHRYEAKRKTLGDGLSI 449
             +  ++ K ++  K +Y    M     EL+ FP F GY L +RIK RYE  +++ G  L +
Sbjct:   399 LYTFSLKENVMPKWDYFQT-MDYPKSELVKFPQFFGYSLQERIKPRYELVQRS-GVRLLL 456

Query:   450 NKLLSVSVERFSTKIKK 466
             N++LS+S   F   +KK
Sbjct:   457 NQVLSLSGIEFEKVVKK 473

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

TAIR|locus:2037338 AT1G74120 "AT1G74120" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 69/242 (28%), Positives = 114/242 (47%)

Query:   226 VRVLSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPA 285
             VRVL  LG  D  + + I+  FP +L  +   I + +EFL    G++   I R F VFP 
Sbjct:   151 VRVLKSLGFCD-STVSRILSSFPGVLLVNEIEIRRKIEFLVGI-GIARDNIERFFHVFPE 208

Query:   286 VISASRERKLRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECR 345
             V+    E +L+P +D   + G   +D+ K + + P  L L    +   L  +  +  +CR
Sbjct:   209 VLGIGTETRLKPLLDEFMKMGFSKDDVKKEIAREPRVLGLELGELPRCLELINTL--KCR 266

Query:   346 T--RELAAAMGSVTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKM 403
                R    + G+  R   E ++  +     YGL   D + +  K P+++ Y  + +E+K+
Sbjct:   267 EVIRVSIISEGAF-RAGFE-VKLRVDCLCKYGLIRRDAFKVVWKEPRVILYEIEDIEKKI 324

Query:   404 EYLIVGMGREVGELLAFPAFLGYKLDDRIKHRYEA----KRKT-LGDGLSINKLLSVSVE 458
             E+L   MG  +  L   P +LG  L  +I  RY      K K  LG  + +  L+  S++
Sbjct:   325 EFLTNRMGFHINCLADVPEYLGVNLQKQIVPRYNVIDYLKLKGGLGCDIGLKGLIKPSMK 384

Query:   459 RF 460
             RF
Sbjct:   385 RF 386

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2049329 EMB2219 "embryo defective 2219" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 1.0e-12, P = 1.0e-12
 Identities = 67/266 (25%), Positives = 135/266 (50%)

Query:   206 LIVRCPKILNYDLDTQLIPKVRVLSELGGDDVDSTAAIVWKFPAILSY-SLEHIGKHVEF 264
             ++ RCP++L++ ++ ++  +V    ++G +  D    +V+ +P I+ + S + + K + +
Sbjct:   301 VVGRCPELLSFSME-EVKSRVDFFLKMGMNQNDF-GTMVYDYPKIIGFFSFQVMEKKINY 358

Query:   265 LRSFAGLSDQEIFRIFLVFPAVISASRERKLRPRIDFLKQCGLGSEDIFKFLTKAPLFLA 324
             L+ F GLS +E+ R+    P ++  S E + +P + +    G+  E + + L   P+   
Sbjct:   359 LKEF-GLSTEEVGRLLAYKPHLMGCSIEERWKPLVKYFYYLGIPKEGMKRILVVKPILYC 417

Query:   325 LSFDN-IAIKLGFLVKIGY--ECRTRELAAAMGSVTRTSCENLQKVIGLFLSY-GLSFAD 380
             +  +  IA K+ FL ++G   E     L      +T +  + ++ V+   L+  G++  D
Sbjct:   418 IDLEKTIAPKVRFLQEMGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLTRAGVTQKD 477

Query:   381 IYIMSKKHPQILQYN-HKSLEEKMEYLI-VGMG-REVGELLA-FPAFLGYKLDD-RIKHR 435
             I  +    P +L  +    LE  M Y I +G+   ++GE++A FP  L Y +D+ R K+R
Sbjct:   478 IGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNVDNLRPKYR 537

Query:   436 YEAKR--KTLGDGLSINKLLSVSVER 459
             Y  +   + L D +   +  S S+ER
Sbjct:   538 YLRRTMIRPLQDLIEFPRFFSYSLER 563

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2039240 EMB3114 "AT2G36000" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 3.8e-11, P = 3.8e-11
 Identities = 64/226 (28%), Positives = 112/226 (49%)

Query:   218 LDTQLIPKVRVLSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFA-GLSDQEI 276
             L++ +  K+  L  LG D +     ++ + P +LS +L  +   V+++ +     + Q+ 
Sbjct:    69 LESSIHEKLIYLDSLGIDFL----TLINRHPPLLSTALSAVESVVDYMTTPPINFTLQDF 124

Query:   277 FRIFLVFPAVISASRERKLRPRIDFL-KQCGLGSE-DIFKFLTKAPLFLALSFDN-IAIK 333
              R+  + P ++++       P I FL ++ G+ S  D+ + L + P  LA S D+ +   
Sbjct:   125 RRLVSMCPELLTSPLTSHTIPVITFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRPT 184

Query:   334 LGFLVKIGYECRTRELAAAMGSVTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQILQ 393
             L FL +IG     +       SV       L   I  F   G S      M K+ PQ+  
Sbjct:   185 LYFLQRIGILDPHKHTYLLSCSVDN----KLVPRIDYFEKLGFSRRSATAMFKRFPQLFN 240

Query:   394 YN-HKSLEEKMEYLIVGMGREVGELLAFPAFLGYKLDDRIKHRYEA 438
             Y+  ++ E K++YL+V MGR+V E+L FP +  + L++RIK R+EA
Sbjct:   241 YSIAENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEA 286

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2056745 EMB93 "EMBRYO DEFECTIVE 93" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 5.1e-11, P = 5.1e-11
 Identities = 60/223 (26%), Positives = 111/223 (49%)

Query:   248 PAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRERKLRPRIDFLK-QCG 306
             P++ S  +  +   VE L S  GLS   + RI  +FP ++++  E ++ P + FL  +  
Sbjct:    54 PSLRSAPISSVVS-VETLLSSTGLSRPAVGRILDMFPDLLTSDPESEILPVLRFLSNEIS 112

Query:   307 LGSEDIFKFLTKAPLFLALSFD-NIAIKLGFLVKIGYECR----TRELAAAMGSVTRTSC 361
             +  +DI K +++ P  L  S D  +   L FL  +G+  R    +R     + +V RT  
Sbjct:   113 ISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVGRDTITSRNTVLLVSNVERTLI 172

Query:   362 ENLQKVIGLFLSYGLSFA--DIYIMSKKHPQILQYN-HKSLEEKMEYLIVGMGREVGELL 418
               ++     +L  GL F   ++  M  + P +L Y+   +L  K+E+ I  M  +V EL 
Sbjct:   173 PKIE-----YLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPKVEFFIEEMRGDVKELK 227

Query:   419 AFPAFLGYKLDDRIKHRYEAKRKTLGDGLSINKLLSVSVERFS 461
              FP +  + L+ +IK R+   ++  G  + ++++L VS  +F+
Sbjct:   228 RFPQYFSFSLERKIKPRHRLLKEH-GILMPLSEMLKVSDGQFN 269

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0071452 "cellular response to singlet oxygen" evidence=IGI

TAIR|locus:2172798 AT5G23930 "AT5G23930" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 9.0e-10, P = 9.0e-10
 Identities = 69/291 (23%), Positives = 134/291 (46%)

Query:    56 LFQEIGLNEKEVDSLLEKNPTLRV-TPLDKMRSRILSLQSVGIKGMAFCRLISKDSNVLL 114
             L +  G  + ++ S++   P   +  P   +R+++  L+  G        ++SK   +L 
Sbjct:    93 LLRSYGFKDSQISSIISTYPRFLIENPEKTLRAKLHFLKLNGASSSELTEIVSKVPKIL- 151

Query:   115 AEEIDRLICFVRDDLDGNIEPMKLERLLTSTETKFLVGFDQKVRLLLQLGVPQETILHVL 174
              +   + I    D +    E ++ +   +S+  +     ++ V +L +LGVPQ  +L++L
Sbjct:   152 GKRGGKWISHYYDYVK---EILQDQDSSSSSSKRKQTNRNRNVSVLRKLGVPQRLLLNLL 208

Query:   175 NNINLSKAVCLKSVEDIERTFAYLNPFGGADLIVRCPKILN-----YDLDTQLIP-KVRV 228
               I+ +K VC K  E  E +   +   G      + PK +N     Y+L  + I  KV  
Sbjct:   209 --ISRAKPVCGK--ERFEESVKKIVEMG---FDPKSPKFVNALYVFYELSDKTIEEKVNA 261

Query:   229 LSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVIS 288
                LG   V+   A+  K+P  L YS ++I +  E L+   GL+ +E+  +   +P  + 
Sbjct:   262 YIRLGLS-VNEVWAVFKKWPFSLKYSEKNIIQKFETLKR-VGLTKEEVCLVVKKYPECVG 319

Query:   289 ASRERKLRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVK 339
              S E+ ++    FL + G   +++   + + P  + L+ D++  K  FLVK
Sbjct:   320 TSEEKIVKSVKTFL-ELGFTKDEVLMIIKRHPQCIGLAADSVKKKTEFLVK 369

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2051814 AT2G44020 "AT2G44020" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 2.4e-09, P = 2.4e-09
 Identities = 64/267 (23%), Positives = 121/267 (45%)

Query:   206 LIVRCPKILNYDLDTQLIPKVRVLSELGGDDVDSTAAIVWKFPAILSYSLEHIGKH-VEF 264
             ++++ P++L + L+  +   V  L  +G    D    +V ++P +L   +  + K  V++
Sbjct:   200 VLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRD-IGPMVTQYPYLLGMRVGTMIKPLVDY 258

Query:   265 LRSFAGLSDQEIFRIFLVFPAVISASRERKLRPRIDFLKQCGLGSEDIFKFLTKAPLFLA 324
             L S  GL  + + R+      ++  + E  ++P +D L   G+  E +   + + P  L 
Sbjct:   259 LISI-GLPKKIVARMLEKRSYIVGYNLEETVKPNVDCLISFGVKKELLPLLIAQYPQILG 317

Query:   325 LSFD-NIAIKLGFL---VKIGYECRTRELAAAMGSVTRTSCENLQKVIGLFLSYGLSFAD 380
             L     ++ +  F    +KI  E   R +   M  +       + K I   L       D
Sbjct:   318 LPVKAKMSTQQYFFSLKLKIDPEGFAR-VVEKMPQIVSLKQNVIMKPIEFLLGRAFQVED 376

Query:   381 IYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREVGELLAFPAFLGYKLDDRIKHRYEAKR 440
             I  M  + PQIL    + ++    +    MGR + EL+ +P +  Y L+ RIK RY+ K 
Sbjct:   377 IAKMVVRCPQILCSRVELMKNSYYFYKTEMGRPMKELVEYPEYFTYSLESRIKPRYQ-KL 435

Query:   441 KTLGDGLSINKLLSVSVERFSTKIKKN 467
             ++ G   S+N  L+ S +RF  +++ N
Sbjct:   436 QSKGIRSSLNWFLNCSDQRFEERLQGN 462

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1006230704 AT1G62085 "AT1G62085" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 4.2e-09, P = 4.2e-09
 Identities = 73/295 (24%), Positives = 132/295 (44%)

Query:    54 VTLFQEIGLNEKEVDSLLEKNPTLRVTPLDK-MRSRILSLQSVGIKGMAFCRLISKDSNV 112
             ++L +  G  + ++ S++   P L V   +K +  ++  LQS G        ++S    +
Sbjct:    91 LSLLRSHGFTDSQISSIITDYPQLLVADAEKSIGPKLQFLQSRGASRSELTHIVSTVPEI 150

Query:   113 LLAEEIDRLIC----FVRDDLDGNIEPMKLERLLTST-ETKFLVGFDQKVRLLLQLGVPQ 167
             L  +  D+ I     FV++ ++ + +  K E+L  S  E        + V +L +LGVPQ
Sbjct:   151 L-GKRGDKTISIYYDFVKEIIEAD-KSSKFEKLCHSLPEGSKQENKIRNVLVLRELGVPQ 208

Query:   168 ETILHVLNNINLSKAVCLKSVEDIERTFAYLNPFG---GADLIVRCPKILNYDLDTQLIP 224
               +  +L  I+  + VC K  E+ E +   +   G        V+  +++    D  +  
Sbjct:   209 RLLFPLL--ISDHQPVCGK--ENFEESLKKVVEMGFDPTTSKFVKALRVVYRFRDKTIEA 264

Query:   225 KVRVLSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFP 284
             KV V   LG   V    A+  K P+ L++S   I +  E L+   GL + ++  +   FP
Sbjct:   265 KVNVCKSLGFS-VGDVWAMFKKCPSFLNFSENKIVQTWETLKK-CGLLEDDVLSVLKKFP 322

Query:   285 AVISASRERKLRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVK 339
               I+AS E+K+   I+     G   +++     + P  L LS + +  K  FLVK
Sbjct:   323 QCINAS-EQKIMNSIETFLGLGFSRDEVAMIAKRFPQCLILSAETVKKKTEFLVK 376

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2102827 AT3G46950 "AT3G46950" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 8.7e-09, P = 8.7e-09
 Identities = 67/311 (21%), Positives = 123/311 (39%)

Query:   140 RLLTSTETKFLVGFDQKVRLLLQLGVPQETILHVLNNINLSKAVCLKSVEDIERTFAYLN 199
             RLL +   K L     K++ L   G     ++ +++N+     +  K  E +   + ++ 
Sbjct:   110 RLLVTDAEKSL---RPKLQFLKSRGASSSEVIEIVSNV--PTILDKKGEESVSLYYDFVK 164

Query:   200 PF--GGADLIVRCPKILNYDLDTQLIPKVRVLSELGGDDVDSTAAIVWKFPAILSYSLEH 257
                  G  L + CP+          I  + VL ELG       + ++ ++  +       
Sbjct:   165 DIMQDGKSLCISCPE----GKKGNRIRNISVLRELGVPQKLLFSLLISRYQPVCGKE--- 217

Query:   258 IGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRERKLRPRIDFLKQCGLGSEDIFKFLT 317
               K  E L+    +        F+    V+    E+ +  +++  K+ G    +I+    
Sbjct:   218 --KFEESLKKVVDMGFDPAKSKFVEALHVVYEMSEKTIEEKVNVYKRLGFSEAEIWAIFK 275

Query:   318 KAPLFLALSFDNIAIKLGFLVKIGY-ECRTRELAAAMGSVTRTSCENLQKVIGLFLSYGL 376
             K P FL  S   I +    L K G  E     +  +     R+S + +   I +FL  G 
Sbjct:   276 KWPYFLKFSEKKIILMFETLKKCGLVEEEIISVLKSRPQCIRSSEQKILDSIEMFLGLGF 335

Query:   377 SFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREVGELLAFPAFLGYKLDDRIKHRY 436
             S  D  +M K++P    Y+ ++L +K E L+  M   +  ++  P  LGY L+ RI  R 
Sbjct:   336 SRDDFKMMVKRYPCCTAYSGETLRKKFEVLVKMMNWPLEAVVMIPTVLGYSLEKRIVPRS 395

Query:   437 EAKRKTLGDGL 447
                +  +  GL
Sbjct:   396 NVIKALMSKGL 406

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	471
pfam02536	345	pfam02536, mTERF, mTERF	2e-16
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	1e-15
pfam02536	345	pfam02536, mTERF, mTERF	2e-07

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 80.2 bits (198), Expect = 2e-16
 Identities = 74/316 (23%), Positives = 129/316 (40%), Gaps = 19/316 (6%)

Query: 156 KVRLLLQLGVPQETILHVLNNINLSKAVCLKSVEDIERTFAYLNPFGGADLIV-----RC 210
           K++ L   G  +  +  +++ +   K +  K V+ I   + +L     ADL       + 
Sbjct: 36  KLQFLQSRGASKSELTKIVSTV--PKILGKKGVKSISSVYDFLKKIIVADLDKSSKLEKY 93

Query: 211 PKILNYDLDTQLIPKVRVLSELGGDDVDSTAAIVWKFPAILSYSL--EHIGKHVEFLRSF 268
           P+ L    +   I  V VL ELG       + ++ +   +    +  E + K VE     
Sbjct: 94  PESLPQGNNGNKIRNVSVLRELGVPPKLLFSLLISRPRPVCGKEVFEESLKKVVEM---- 149

Query: 269 AGLSDQEIFRIFLVFPAVISASRERKLRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSFD 328
            G       R+    P ++  S ++ ++P ++FLK  G   ED++  L K P  L  S  
Sbjct: 150 -GFDPTTFKRVIAKRPRLLLYSSDKTIKPNVEFLKSLGFSVEDVWAILKKCPELLGSSEK 208

Query: 329 NIAIKLGFLVKIGYECRTRELAAAMGSVTRTSCENLQKVIGLFLSYGLSFADIYIMSKKH 388
                   L K         +   M      S + +   I   L  G S  +I  M K+ 
Sbjct: 209 KKLQTQEIL-KTCGLLEFLSVIKKMPQFVSYSEQKILNKIEFLLGLGFSREEIAKMVKRC 267

Query: 389 PQILQYNHKSLEEKMEYLIVGMGREVGELLAFPAFLGYKLDDRIKHRYEAKRKTLGDG-- 446
           PQ+L  + + +++K E+L+  M   + EL+ FP   GY L+ RIK R    +  +  G  
Sbjct: 268 PQLLGLSVEKVKKKTEFLVKEMNWPLKELVEFPQVFGYSLEKRIKPRCNVVKALMSKGKS 327

Query: 447 --LSINKLLSVSVERF 460
              S++ +L  + E F
Sbjct: 328 ILPSLSSMLKCTDEEF 343

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 79.0 bits (195), Expect = 1e-15
 Identities = 70/277 (25%), Positives = 115/277 (41%), Gaps = 44/277 (15%)

Query: 196 AYL-----NPFGGADLIVRCPKILNYDLDTQLIPKVRVLSELGGDDVDSTAAIVWKFPAI 250
           AYL      P     ++ R P+IL   +   + PKV  L  LG   +   A I+ K P I
Sbjct: 201 AYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLA-VARILEKRPYI 259

Query: 251 LSYSLEHIGK-HVEFLRSFAGLSDQEIFRIFLVFPAVISASRERKLRPRIDFL-KQCGLG 308
           L + LE   K +VE L  F G+  + +  +   +P ++    + KL  +  +L  +  + 
Sbjct: 260 LGFDLEETVKPNVECLLEF-GVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKID 318

Query: 309 SEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECRTRELAAAMGSVTRTSCENLQKVI 368
            ED  + + K P  ++L+ +     + FL                               
Sbjct: 319 PEDFGRVIEKLPQIVSLNRNVALKHVEFL---------------------RGR------- 350

Query: 369 GLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREVGELLAFPAFLGYKL 428
                 G S  D+  M  + PQIL  N + ++  +E+    M R + EL+ FPA+  Y L
Sbjct: 351 ------GFSAQDVAKMVVRCPQILALNLEIMKPSLEFFKKEMKRPLKELVEFPAYFTYGL 404

Query: 429 DDRIKHRYEAKRKTLGDGLSINKLLSVSVERFSTKIK 465
           + RIK RYE   K  G   S+   L+ S ++F  ++ 
Sbjct: 405 ESRIKPRYERVAKK-GIKCSLAWFLNCSDDKFEQRMS 440

Length = 487

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 57/289 (19%), Positives = 102/289 (35%), Gaps = 73/289 (25%)

Query: 52  VSVTLFQEIGLNEKEVDSLLEKNPTLRVTPLDKMRSRILS-LQSVGIKGMAFCRLISKDS 110
                 ++I + + +  S LEK P       +  + R +S L+ +G+       L+    
Sbjct: 71  SVYDFLKKIIVADLDKSSKLEKYPESLPQGNNGNKIRNVSVLRELGVPPKLLFSLLISRP 130

Query: 111 NVLLAEEIDRLICFVRDDLDGNIEPMKLERLLTSTETKFLVGFDQKVRLLLQLGVPQETI 170
             +  +E+                                  F++ ++ ++++G    T 
Sbjct: 131 RPVCGKEV----------------------------------FEESLKKVVEMGFDPTTF 156

Query: 171 LHVLNNINLSKAVCLKSVEDIERTFAYLNPFGGADLIVRCPKILNYDLDTQLIPKVRVLS 230
             V                                 I + P++L Y  D  + P V  L 
Sbjct: 157 KRV---------------------------------IAKRPRLLLYSSDKTIKPNVEFLK 183

Query: 231 ELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISAS 290
            L G  V+   AI+ K P +L  S +   +  E L++   L   E   +    P  +S  
Sbjct: 184 SL-GFSVEDVWAILKKCPELLGSSEKKKLQTQEILKTCGLL---EFLSVIKKMPQFVS-Y 238

Query: 291 RERKLRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVK 339
            E+K+  +I+FL   G   E+I K + + P  L LS + +  K  FLVK
Sbjct: 239 SEQKILNKIEFLLGLGFSREEIAKMVKRCPQLLGLSVEKVKKKTEFLVK 287

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	471
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
KOG1267	413	consensus Mitochondrial transcription termination	99.96
KOG1267	413	consensus Mitochondrial transcription termination	99.8
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	97.13
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	96.66
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	94.53
PF04695	136	Pex14_N: Peroxisomal membrane anchor protein (Pex1	85.12
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	84.66

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=1.9e-58  Score=481.97  Aligned_cols=379  Identities=23%  Similarity=0.368  Sum_probs=339.5

Q ss_pred             HhccchhHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCchhhHHHHHHHHhcCCCchhhhhhhhccccccchhhHHHHHH
Q 012091           44 QRMNWFAFVSVTLFQEIGLNEKEVDSLLEKNPTLRVTPLDKMRSRILSLQSVGIKGMAFCRLISKDSNVLLAEEIDRLIC  123 (471)
Q Consensus        44 ~~~~~~~~~~~~fL~~lGls~~~i~~~v~~~P~ll~~~~~~l~~~v~~L~~lGls~~~i~~ll~~~P~iL~~~~l~~~l~  123 (471)
                      +........+++||+++|++..++.++.      +.++++.+++++++|+++|++.+||+    ++|.+|+++       
T Consensus        57 ~~~~~~~~~~~~~L~~lgi~~~~l~~~~------~p~~~~~~~~~l~~L~s~G~~~~~i~----~~P~iL~~~-------  119 (487)
T PLN03196         57 KEKLVNREKVLDFLRGIGIDPDELDGLE------LPSTVDVMRERVEFLHKLGLTIEDIN----EYPLVLGCS-------  119 (487)
T ss_pred             hhhhhhHHHHHHHHHHcCCCchhhhccC------CCccHHHHHHHHHHHHHcCCChHHhc----cCcHHhhcC-------
Confidence            3355667788999999999999887632      45788999999999999999999998    789999764       


Q ss_pred             HHHhhccCCCChhhHHHHhhhccccccccchhHHHHHHhcCCCHHHHHHHHhhcccccccccCCcc-cHHHHHHHHhhcC
Q 012091          124 FVRDDLDGNIEPMKLERLLTSTETKFLVGFDQKVRLLLQLGVPQETILHVLNNINLSKAVCLKSVE-DIERTFAYLNPFG  202 (471)
Q Consensus       124 ~l~~~l~gs~~~~~l~~~l~~~~~~~~l~~~~~v~~L~~lGl~~~~i~~l~~~~~~p~~l~~~s~~-~~~~~v~~L~~lG  202 (471)
                               +  +              -+..|.++||+++|++..+|++++.+  +|++|. .+.+ ++.++++||+++|
T Consensus       120 ---------v--~--------------~~l~Pvl~fL~~lG~s~~~i~~lI~~--~P~lL~-~sve~~L~P~v~fL~~lG  171 (487)
T PLN03196        120 ---------V--K--------------KNMIPVLDYLEKLGVTRSSLPELLRR--YPQVLH-ASVVVDLAPVVKYLQGLD  171 (487)
T ss_pred             ---------H--h--------------hhhHHHHHHHHHcCCCHHHHHHHHHh--CCceec-ccHHHHHHHHHHHHHHcC
Confidence                     0  0              01125677888899999999999998  699997 6664 8999999999999


Q ss_pred             Cc-----hhhhhcccccccCccccHHHHHHHHHhCCCCChHHHHHHHHhcCcccccchh-cHHHHHHHhHHhhCCCHHHH
Q 012091          203 GA-----DLIVRCPKILNYDLDTQLIPKVRVLSELGGDDVDSTAAIVWKFPAILSYSLE-HIGKHVEFLRSFAGLSDQEI  276 (471)
Q Consensus       203 ~~-----~~i~~~p~ll~~~~e~~l~~kv~~L~~~g~~~~~~l~~~v~k~P~iL~~s~e-~l~~~~~fL~~~lGl~~~~i  276 (471)
                      +.     +++.++|.++++++++++.++++||.++|+ +++++++++.++|.+|+++.+ +++++++||++ +|++.++|
T Consensus       172 vs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGv-s~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~-lGv~~~~I  249 (487)
T PLN03196        172 VKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGV-APRDIGPMLTRFPEILGMRVGNNIKPKVDYLES-LGLPRLAV  249 (487)
T ss_pred             CCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCC-CHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHH-cCCCHHHH
Confidence            95     378999999999999999999999999985 789999999999999999998 79999999987 59999999


Q ss_pred             HHHHHhCCcccccCcccchhhhHHHHHhcCCChHhHHhHhhcCccccccChh-hHHHHHHHHH-HcCCCccch-hHHHHH
Q 012091          277 FRIFLVFPAVISASRERKLRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSFD-NIAIKLGFLV-KIGYECRTR-ELAAAM  353 (471)
Q Consensus       277 ~~ii~~~P~lL~~sle~~l~pr~~~L~~~Gl~~~~i~~ll~~~P~iL~~s~~-~l~~~l~~L~-~~G~~~~~~-~~~~~~  353 (471)
                      ++++.++|++|++|+|++++|++++|+++|++.+++..++.++|.+++++.+ +++++++|+. ++|++++.- .+.+..
T Consensus       250 ~~il~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~  329 (487)
T PLN03196        250 ARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKL  329 (487)
T ss_pred             HHHHHhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999987 7999999995 599998763 345556


Q ss_pred             HHHhhcChhhHHHHHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHhhcCCChHHHhhcCceeecccccchh
Q 012091          354 GSVTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREVGELLAFPAFLGYKLDDRIK  433 (471)
Q Consensus       354 ~~~~~~~~~~l~~ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~L~~Sle~rI~  433 (471)
                      +.++..+.++|+++++||.++|++.++|..|+.++|++|++|.++|++|++||+++||++.++|+++|.+|+||+|+||+
T Consensus       330 P~il~lSe~kl~~kvefL~~~Gls~edI~~mv~k~P~lL~~S~~~l~~k~dFlvneMg~~~~~Iv~fP~~LsySLEkRI~  409 (487)
T PLN03196        330 PQIVSLNRNVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNLEIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIK  409 (487)
T ss_pred             chhhcccHHHHHHHHHHHHHcCCCHHHHHHHHHhCCceeeccHHHHHHHHHHHHHHhCCCHHHHHhChHHhccChhhhhH
Confidence            67788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCCCchhhhcccHHHHHHHHhhCCCC
Q 012091          434 HRYEAKRKTLGDGLSINKLLSVSVERFSTKIKKNPIH  470 (471)
Q Consensus       434 pR~~~L~~L~~~g~~l~~~l~~sd~~F~~~~~k~~~~  470 (471)
                      |||++|+. ++..+++.++|.+||++|+++|+..+++
T Consensus       410 PR~~~L~~-kGl~~sL~~~L~~sd~~F~~r~v~~y~e  445 (487)
T PLN03196        410 PRYERVAK-KGIKCSLAWFLNCSDDKFEQRMSGDFIE  445 (487)
T ss_pred             HHHHHHHH-cCCCCCHHHHhccCHHHHHHHHhhhccc
Confidence            99998653 3444789999999999999999987754

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=7.2e-51  Score=412.72  Aligned_cols=330  Identities=29%  Similarity=0.516  Sum_probs=208.4

Q ss_pred             HHHHHcCCChHHHHHHHHhCCCCCCCCchh-hHHHHHHHHhcCCCchhhhhhhhccccccchh---hHHHHHHHHHhhcc
Q 012091           55 TLFQEIGLNEKEVDSLLEKNPTLRVTPLDK-MRSRILSLQSVGIKGMAFCRLISKDSNVLLAE---EIDRLICFVRDDLD  130 (471)
Q Consensus        55 ~fL~~lGls~~~i~~~v~~~P~ll~~~~~~-l~~~v~~L~~lGls~~~i~~ll~~~P~iL~~~---~l~~~l~~l~~~l~  130 (471)
                      ++|+++|+++++|.++++++|.++.+++++ +.|+++||+++|+|++||++++..+|.+|.++   ++.|.++||+    
T Consensus         2 ~~~~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~----   77 (345)
T PF02536_consen    2 DLLKNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLK----   77 (345)
T ss_dssp             HHHHHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHT----
T ss_pred             hHHHHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHH----
Confidence            789999999999999999999999999987 99999999999999999999999999999875   5666665554    


Q ss_pred             CCCChhhHHHHhhhccccccccchhHHHHHHhcCCCHHHHHHHHhhcccccccccCCcccHHHHHHHHhhcCCch-----
Q 012091          131 GNIEPMKLERLLTSTETKFLVGFDQKVRLLLQLGVPQETILHVLNNINLSKAVCLKSVEDIERTFAYLNPFGGAD-----  205 (471)
Q Consensus       131 gs~~~~~l~~~l~~~~~~~~l~~~~~v~~L~~lGl~~~~i~~l~~~~~~p~~l~~~s~~~~~~~v~~L~~lG~~~-----  205 (471)
                                                     +.|++++++.+++.+  +|+.+.....+++.+.+++|+++|+++     
T Consensus        78 -------------------------------~~~~s~~d~~~~l~r--~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~  124 (345)
T PF02536_consen   78 -------------------------------SIGLSDEDIVKVLKR--YPRILSFSVEENLSPNVAFLRSLGVPPSQIIS  124 (345)
T ss_dssp             -------------------------------TTSS-HHHHHHHHHH---SHHHHS---HHHHHHHHHHHHTT--HHHHHH
T ss_pred             -------------------------------HHcCCHHHHHHHHHh--cchhhccchHhhhhhhhhHHhhcCCcHHHHHH
Confidence                                           456666777776666  466554222223444444444444421     


Q ss_pred             hhhhcccccccCccccHHHHHHHHHhCCCCChHHHHHHHHhcCccccc-chhcHHHHHHHhHHhhCCCHHHHHHHHHhCC
Q 012091          206 LIVRCPKILNYDLDTQLIPKVRVLSELGGDDVDSTAAIVWKFPAILSY-SLEHIGKHVEFLRSFAGLSDQEIFRIFLVFP  284 (471)
Q Consensus       206 ~i~~~p~ll~~~~e~~l~~kv~~L~~~g~~~~~~l~~~v~k~P~iL~~-s~e~l~~~~~fL~~~lGl~~~~i~~ii~~~P  284 (471)
                      .+..+|..+...  +++.+.++++.++|+ ++++++.++.++|.++.. +.++++++++||++ +|++.+++.+++.++|
T Consensus       125 ~l~~~~~~~~~~--~~~~~~v~~l~~lG~-~~~~~~~vi~~~P~~l~~~~~~~~~~~v~~L~~-~G~~~~~i~~~l~~~P  200 (345)
T PF02536_consen  125 LLISRPPLFLSS--EKIKERVEFLKELGF-DPEKIGRVIAKNPRLLLSDSESELKPKVEFLRS-LGFSKEDIGKLLRKCP  200 (345)
T ss_dssp             HHHH-CHHHHS---HHHHCHHHHHCCCTS-SHHHHCCCHHHHHHHHCGSCCCCCHHHHHHHHH-CTT-GHHHHHHHHHTT
T ss_pred             HHHhcCccccch--hHHHHHHHHHHHhCC-CchhhcccccccchhhccccHHHHHHHHHHHHh-hcccchhhhHHhhccc
Confidence            222223222222  356666666666654 455666666666644443 33356666666655 3666666666666666


Q ss_pred             cccccCcccchhhhHHHHHhcCCChHhHHhHhhcCccccccChhhHHHHHHHHHHcCCCccchhHHHHHHHHhhcChhhH
Q 012091          285 AVISASRERKLRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECRTRELAAAMGSVTRTSCENL  364 (471)
Q Consensus       285 ~lL~~sle~~l~pr~~~L~~~Gl~~~~i~~ll~~~P~iL~~s~~~l~~~l~~L~~~G~~~~~~~~~~~~~~~~~~~~~~l  364 (471)
                      .++.+|.++.+.+...++...|.. ++  .++.++|.+++++                                  .+++
T Consensus       201 ~~l~~s~~~~l~~~~~l~~~~~~~-~~--~~i~~~p~il~~~----------------------------------~~~l  243 (345)
T PF02536_consen  201 RLLSLSVEKILEPVLYLLSSGGVE-EE--RVIKKFPQILSLS----------------------------------EEKL  243 (345)
T ss_dssp             TGGGCGCHC------------------------------THH----------------------------------HHHH
T ss_pred             ceeccccccccccccccccccccc-cc--ccccccccccccc----------------------------------hHhH
Confidence            666666655444433333333222 22  5555666666555                                  4556


Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHhhcCCChHHHhhcCceeecccccchhhHHHHHHHHhc
Q 012091          365 QKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREVGELLAFPAFLGYKLDDRIKHRYEAKRKTLG  444 (471)
Q Consensus       365 ~~ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~L~~Sle~rI~pR~~~L~~L~~  444 (471)
                      ++++++|.++|||++||++|+.++|+||++|.+++++|++||.++||++.++|+++|.+|+||+|+||+|||+++++|++
T Consensus       244 ~~~i~~L~~lG~s~~ei~~mv~~~P~iL~~s~e~l~~k~~fl~~~m~~~~~~i~~~P~~l~~sLe~ri~PR~~~~~~l~~  323 (345)
T PF02536_consen  244 KPKIEFLQSLGFSEEEIAKMVRRFPQILSYSIEKLKPKFEFLVKEMGLPLEEIVEFPQYLSYSLEKRIKPRYEVLKVLKS  323 (345)
T ss_dssp             HHHHHHHHTTT--HHHHHHHHHHSGGGGGS-HHHHHHHHHHHHHCCT--HHHHHHSCHHHCS-HHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHhCcchhhcchhhhhHHHHHHHHHhCcCHHHHhhCCceeEechhhhhhhHHHHHHHHHH
Confidence            77888888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC----CCchhhhcccHHHHHH
Q 012091          445 DG----LSINKLLSVSVERFST  462 (471)
Q Consensus       445 ~g----~~l~~~l~~sd~~F~~  462 (471)
                      +|    +++.+++.+||++|++
T Consensus       324 ~g~~~~~sl~~~l~~s~~~F~~  345 (345)
T PF02536_consen  324 KGLIINPSLSSMLSCSDEEFLK  345 (345)
T ss_dssp             TTTGGGGGS-HHHHHHHHHHT-
T ss_pred             CcCCCCCCHHHHhhccHHHhcC
Confidence            88    7899999999999974

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=2.1e-41  Score=353.82  Aligned_cols=332  Identities=20%  Similarity=0.347  Sum_probs=222.0

Q ss_pred             HHHHHHHHcCCChHHHHHHHHhCCCCCCCCchh-hHHHHHHHHhcCCCchhhhhhhhccccccchh---hHHHHHHHHHh
Q 012091           52 VSVTLFQEIGLNEKEVDSLLEKNPTLRVTPLDK-MRSRILSLQSVGIKGMAFCRLISKDSNVLLAE---EIDRLICFVRD  127 (471)
Q Consensus        52 ~~~~fL~~lGls~~~i~~~v~~~P~ll~~~~~~-l~~~v~~L~~lGls~~~i~~ll~~~P~iL~~~---~l~~~l~~l~~  127 (471)
                      +.++||+++|++.+||+    ++|.+|.+++++ +.|+++||+++|++.++|++++.++|.+|.++   ++.|+++    
T Consensus        94 ~~l~~L~s~G~~~~~i~----~~P~iL~~~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~----  165 (487)
T PLN03196         94 ERVEFLHKLGLTIEDIN----EYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVK----  165 (487)
T ss_pred             HHHHHHHHcCCChHHhc----cCcHHhhcCHhhhhHHHHHHHHHcCCCHHHHHHHHHhCCceecccHHHHHHHHHH----
Confidence            46699999999999997    699999999976 99999999999999999999999999999874   4555554    


Q ss_pred             hccCCCChhhHHHHhhhccccccccchhHHHHHHhcCCCHHHHHHHHhhcccccccccCCcc-cHHHHHHHHhhcCCc--
Q 012091          128 DLDGNIEPMKLERLLTSTETKFLVGFDQKVRLLLQLGVPQETILHVLNNINLSKAVCLKSVE-DIERTFAYLNPFGGA--  204 (471)
Q Consensus       128 ~l~gs~~~~~l~~~l~~~~~~~~l~~~~~v~~L~~lGl~~~~i~~l~~~~~~p~~l~~~s~~-~~~~~v~~L~~lG~~--  204 (471)
                                                     ||+++|++.++|.+++.+  +|++++ .+.+ .+.++++||+++|+.  
T Consensus       166 -------------------------------fL~~lGvs~~~i~~~l~r--~P~LL~-~~~e~~l~p~v~fL~~lGvs~~  211 (487)
T PLN03196        166 -------------------------------YLQGLDVKRQDIPRVLER--YPELLG-FKLEGTMSTSVAYLVSIGVAPR  211 (487)
T ss_pred             -------------------------------HHHHcCCCHHHHHHHHHh--Cchhhc-CCHHHHHHHHHHHHHHcCCCHH
Confidence                                           455555566666666555  455554 3333 455666666666653  


Q ss_pred             ---hhhhhcccccccCccccHHHHHHHHHhCCCCChHHHHHHHHhcCcccccchh-cHHHHHHHhHHhhCCCHHHHHHHH
Q 012091          205 ---DLIVRCPKILNYDLDTQLIPKVRVLSELGGDDVDSTAAIVWKFPAILSYSLE-HIGKHVEFLRSFAGLSDQEIFRIF  280 (471)
Q Consensus       205 ---~~i~~~p~ll~~~~e~~l~~kv~~L~~~g~~~~~~l~~~v~k~P~iL~~s~e-~l~~~~~fL~~~lGl~~~~i~~ii  280 (471)
                         +++.++|.++.+++++++.|+++||+++|+ +.+++++++.++|.+|++|++ +++++++||.+ +|++++.++.++
T Consensus       212 ~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv-~~~~I~~il~~~P~iL~~sle~~lkp~v~~L~e-lGv~~~~i~~lI  289 (487)
T PLN03196        212 DIGPMLTRFPEILGMRVGNNIKPKVDYLESLGL-PRLAVARILEKRPYILGFDLEETVKPNVECLLE-FGVRKEALPSVI  289 (487)
T ss_pred             HHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCC-CHHHHHHHHHhCCceeEcCHHHhHHHHHHHHHH-cCCCHHHHHHHH
Confidence               255566666666665566666666666653 455566666666666666655 56666666654 366666666666


Q ss_pred             HhCCcccccCcccchhhhHHHHH-hcCCChHhHHhHhhcCccccccChhhHHHHHHHHHHcCCCccc-hhHHHHHHHHhh
Q 012091          281 LVFPAVISASRERKLRPRIDFLK-QCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECRT-RELAAAMGSVTR  358 (471)
Q Consensus       281 ~~~P~lL~~sle~~l~pr~~~L~-~~Gl~~~~i~~ll~~~P~iL~~s~~~l~~~l~~L~~~G~~~~~-~~~~~~~~~~~~  358 (471)
                      .++|.++++++++++.++++||+ +.|++.+++.+++.++|.+++++.++++++++|++++|++.+. ..+....+.++.
T Consensus       290 ~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~il~lSe~kl~~kvefL~~~Gls~edI~~mv~k~P~lL~  369 (487)
T PLN03196        290 AQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNRNVALKHVEFLRGRGFSAQDVAKMVVRCPQILA  369 (487)
T ss_pred             HhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchhhcccHHHHHHHHHHHHHcCCCHHHHHHHHHhCCceee
Confidence            66666666666555666666653 4666666666666666666666665666666666666665543 112222333444


Q ss_pred             cChhhHHHHHHHHH-HcCCCHHHHHHHHHhCCcccccChh-hHHHHHHHHHhhcCCChHHHhhcCceeecccccchhhHH
Q 012091          359 TSCENLQKVIGLFL-SYGLSFADIYIMSKKHPQILQYNHK-SLEEKMEYLIVGMGREVGELLAFPAFLGYKLDDRIKHRY  436 (471)
Q Consensus       359 ~~~~~l~~ki~~L~-~lG~s~~ev~~~v~~~P~iL~~s~~-~l~~k~~fL~~~mg~~~~~i~~~P~~L~~Sle~rI~pR~  436 (471)
                      .+.+++++|++||. ++|++.++    +.++|++|+||.+ +|++++.+|.+ -|+..    .-..+|.+|= ++-..|+
T Consensus       370 ~S~~~l~~k~dFlvneMg~~~~~----Iv~fP~~LsySLEkRI~PR~~~L~~-kGl~~----sL~~~L~~sd-~~F~~r~  439 (487)
T PLN03196        370 LNLEIMKPSLEFFKKEMKRPLKE----LVEFPAYFTYGLESRIKPRYERVAK-KGIKC----SLAWFLNCSD-DKFEQRM  439 (487)
T ss_pred             ccHHHHHHHHHHHHHHhCCCHHH----HHhChHHhccChhhhhHHHHHHHHH-cCCCC----CHHHHhccCH-HHHHHHH
Confidence            45566677777776 68999887    8999999999986 99999999986 68742    1224566664 5666665


Q ss_pred             H
Q 012091          437 E  437 (471)
Q Consensus       437 ~  437 (471)
                      .
T Consensus       440 v  440 (487)
T PLN03196        440 S  440 (487)
T ss_pred             h
Confidence            5

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=5.6e-35  Score=296.33  Aligned_cols=285  Identities=27%  Similarity=0.493  Sum_probs=204.6

Q ss_pred             chhHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCchh-hHHHHHHHHhcCCCchhhhhhhhccccccchhhHHHHHHHHH
Q 012091           48 WFAFVSVTLFQEIGLNEKEVDSLLEKNPTLRVTPLDK-MRSRILSLQSVGIKGMAFCRLISKDSNVLLAEEIDRLICFVR  126 (471)
Q Consensus        48 ~~~~~~~~fL~~lGls~~~i~~~v~~~P~ll~~~~~~-l~~~v~~L~~lGls~~~i~~ll~~~P~iL~~~~l~~~l~~l~  126 (471)
                      ..-...++||.+.|++.+||++++.++|.+++.+.++ +.|.+++|+++|.+.+|+++++.++|.+|..+.         
T Consensus        31 ~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~s~~d~~~~l~r~p~~l~~~~---------  101 (345)
T PF02536_consen   31 KTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGLSDEDIVKVLKRYPRILSFSV---------  101 (345)
T ss_dssp             -HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS-HHHHHHHHHH-SHHHHS-----------
T ss_pred             cchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcCCHHHHHHHHHhcchhhccch---------
Confidence            3445678999999999999999999999999999765 999999999999999999999999999886531         


Q ss_pred             hhccCCCChhhHHHHhhhccccccccchhHHHHHHhcCCCHHHHHHHHhhcccccccccCCcccHHHHHHHHhhcCCc--
Q 012091          127 DDLDGNIEPMKLERLLTSTETKFLVGFDQKVRLLLQLGVPQETILHVLNNINLSKAVCLKSVEDIERTFAYLNPFGGA--  204 (471)
Q Consensus       127 ~~l~gs~~~~~l~~~l~~~~~~~~l~~~~~v~~L~~lGl~~~~i~~l~~~~~~p~~l~~~s~~~~~~~v~~L~~lG~~--  204 (471)
                               +   .           ...+|+++|+++|++.+.+.+++..  .|..+. .. +++.+.++++.++|++  
T Consensus       102 ---------~---~-----------~l~~~v~~L~~lGv~~~~~~~~l~~--~~~~~~-~~-~~~~~~v~~l~~lG~~~~  154 (345)
T PF02536_consen  102 ---------E---E-----------NLSPNVAFLRSLGVPPSQIISLLIS--RPPLFL-SS-EKIKERVEFLKELGFDPE  154 (345)
T ss_dssp             -------------H-----------HHHHHHHHHHHTT--HHHHHHHHHH---CHHHH-S--HHHHCHHHHHCCCTSSHH
T ss_pred             ---------H---h-----------hhhhhhhHHhhcCCcHHHHHHHHHh--cCcccc-ch-hHHHHHHHHHHHhCCCch
Confidence                     0   0           1126899999999999978777776  466554 33 8999999999999996  


Q ss_pred             ---hhhhhcccccccCccccHHHHHHHHHhCCCCChHHHHHHHHhcCcccccchhcHHHHHHHhHHhhCCCHHHHHHHHH
Q 012091          205 ---DLIVRCPKILNYDLDTQLIPKVRVLSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFL  281 (471)
Q Consensus       205 ---~~i~~~p~ll~~~~e~~l~~kv~~L~~~g~~~~~~l~~~v~k~P~iL~~s~e~l~~~~~fL~~~lGl~~~~i~~ii~  281 (471)
                         .++.++|.++..+.+++++++++||+++|+ +++++.+++.++|.+++.|.+++.....++.+..|...+   .++.
T Consensus       155 ~~~~vi~~~P~~l~~~~~~~~~~~v~~L~~~G~-~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~---~~i~  230 (345)
T PF02536_consen  155 KIGRVIAKNPRLLLSDSESELKPKVEFLRSLGF-SKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEE---RVIK  230 (345)
T ss_dssp             HHCCCHHHHHHHHCGSCCCCCHHHHHHHHHCTT--GHHHHHHHHHTTTGGGCGCHC------------------------
T ss_pred             hhcccccccchhhccccHHHHHHHHHHHHhhcc-cchhhhHHhhcccceeccccccccccccccccccccccc---cccc
Confidence               379999988888888899999999999985 789999999999999999999755555555555455555   8889


Q ss_pred             hCCcccccCcccchhhhHHHHHhcCCChHhHHhHhhcCccccccChhhHHHHHHHHHHcCCCccchhHHHHHHHHhhcCh
Q 012091          282 VFPAVISASRERKLRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECRTRELAAAMGSVTRTSC  361 (471)
Q Consensus       282 ~~P~lL~~sle~~l~pr~~~L~~~Gl~~~~i~~ll~~~P~iL~~s~~~l~~~l~~L~~~G~~~~~~~~~~~~~~~~~~~~  361 (471)
                      ++|.+++++.+ ++.+++++|+++|++++++.+|+.++|++|.++.++++++++|+.+                      
T Consensus       231 ~~p~il~~~~~-~l~~~i~~L~~lG~s~~ei~~mv~~~P~iL~~s~e~l~~k~~fl~~----------------------  287 (345)
T PF02536_consen  231 KFPQILSLSEE-KLKPKIEFLQSLGFSEEEIAKMVRRFPQILSYSIEKLKPKFEFLVK----------------------  287 (345)
T ss_dssp             ------THHHH-HHHHHHHHHHTTT--HHHHHHHHHHSGGGGGS-HHHHHHHHHHHHH----------------------
T ss_pred             ccccccccchH-hHHHHHHHHHHhcCcHHHHHHHHHhCcchhhcchhhhhHHHHHHHH----------------------
Confidence            99999999965 6999999999999999999999999999999998877766666653                      


Q ss_pred             hhHHHHHHHHHHcCCCHHHHHHHHHhCCcccccChh-hHHHH---HHHHHhhcC
Q 012091          362 ENLQKVIGLFLSYGLSFADIYIMSKKHPQILQYNHK-SLEEK---MEYLIVGMG  411 (471)
Q Consensus       362 ~~l~~ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~-~l~~k---~~fL~~~mg  411 (471)
                                 ++|++.++    +.++|++|++|.+ .|+++   ++++.+ .|
T Consensus       288 -----------~m~~~~~~----i~~~P~~l~~sLe~ri~PR~~~~~~l~~-~g  325 (345)
T PF02536_consen  288 -----------EMGLPLEE----IVEFPQYLSYSLEKRIKPRYEVLKVLKS-KG  325 (345)
T ss_dssp             -----------CCT--HHH----HHHSCHHHCS-HHHHHHHHHHHHHTT---TT
T ss_pred             -----------HhCcCHHH----HhhCCceeEechhhhhhhHHHHHHHHHH-Cc
Confidence                       57778777    6799999999986 79999   666655 45

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.96  E-value=5.1e-28  Score=250.60  Aligned_cols=315  Identities=26%  Similarity=0.435  Sum_probs=241.2

Q ss_pred             hccchhHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCchh-hHHHHHHHHhcCCCchhhhhhhhccccccchh---hHHH
Q 012091           45 RMNWFAFVSVTLFQEIGLNEKEVDSLLEKNPTLRVTPLDK-MRSRILSLQSVGIKGMAFCRLISKDSNVLLAE---EIDR  120 (471)
Q Consensus        45 ~~~~~~~~~~~fL~~lGls~~~i~~~v~~~P~ll~~~~~~-l~~~v~~L~~lGls~~~i~~ll~~~P~iL~~~---~l~~  120 (471)
                      .....|.+++.+|+++|+++++|..++..+|.++.++.++ +.++..+|++.|++.+++.+++...|.+|..+   ++.+
T Consensus        86 ~~~~~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~~~s~l~~i~s~~~~il~~~~~~~~~~  165 (413)
T KOG1267|consen   86 EDSVNPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGLPSSELSSIVSVVPKILLKSKGESLST  165 (413)
T ss_pred             hhccCcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccCccccccchhhhccHHHHHhhcCCchhh
Confidence            3567799999999999999999999999999999999988 99999999999999999999999888888863   7888


Q ss_pred             HHHHHHhhccCCCChhhHHHHhhhcccccc--ccchhHHHHHHhcCCCHHHHHHHHhhcccccccccCCcccHHHHHHHH
Q 012091          121 LICFVRDDLDGNIEPMKLERLLTSTETKFL--VGFDQKVRLLLQLGVPQETILHVLNNINLSKAVCLKSVEDIERTFAYL  198 (471)
Q Consensus       121 ~l~~l~~~l~gs~~~~~l~~~l~~~~~~~~--l~~~~~v~~L~~lGl~~~~i~~l~~~~~~p~~l~~~s~~~~~~~v~~L  198 (471)
                      .++|+.+... ......+.+.+...+..++  ... +++++++++|...+++..++..  +|+.+....  .+...+.++
T Consensus       166 ~~~~l~~~~~-~~~~s~~~~~~~~~~~~~~~~~~v-~~~~~~~~lg~~~~~L~~~l~~--~~~~~~~~~--~l~~~~~~i  239 (413)
T KOG1267|consen  166 FIEFLKSIPP-ELLSSVVERLLTPVPSFLLNENSV-ERLDIRRELGVKPRLLKSLLES--QPRPVLLYL--KLKARLPFL  239 (413)
T ss_pred             HHHHhhccch-hhhhhHHHHhcccccccccccccc-ccchhhHHhCCCHHHHHHHHhc--Cccceeeeh--hhhhhhhhH
Confidence            9999987520 1222334444444332111  233 5999999999999999999987  576665333  677777777


Q ss_pred             hhcCCc---hhhhhcccccccCccccHHHHHHHHHhCCCCChHHHHHHHHhcCcccccchhcHHHHHHHhHHhhCCCHHH
Q 012091          199 NPFGGA---DLIVRCPKILNYDLDTQLIPKVRVLSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQE  275 (471)
Q Consensus       199 ~~lG~~---~~i~~~p~ll~~~~e~~l~~kv~~L~~~g~~~~~~l~~~v~k~P~iL~~s~e~l~~~~~fL~~~lGl~~~~  275 (471)
                      .++|++   +.+.+.|.++.++.++++++++++|++.|+ +.+|+..|+.|+|.++++|.+++..+.+|+.+.    .++
T Consensus       240 ~~~g~~p~~~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf-~~~di~~~~~k~P~~l~~s~~~~~~~~~~~~~~----~~~  314 (413)
T KOG1267|consen  240 LTLGFDPKTREFVKAPILLSYSSEKTLEPKVEVLKSLGF-SREEIWKMVKKCPQILGYSVKKNLKTTEYLLKN----PKH  314 (413)
T ss_pred             HHhccCCchhHHHhhhhhhcccccccHHHHHHHHHHcCC-CHHHHHHHHHhCchheEeehhhhhHHHHHHHhc----chh
Confidence            777753   356666667777777777777777777764 567777777777777777777666666666554    111


Q ss_pred             HHHHHHhCCcccccCcccchhhhHHHHHhcCCChHhHHhHhhcCccccccChhhHHHHHHHHHHcCCCccchhHHHHHHH
Q 012091          276 IFRIFLVFPAVISASRERKLRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECRTRELAAAMGS  355 (471)
Q Consensus       276 i~~ii~~~P~lL~~sle~~l~pr~~~L~~~Gl~~~~i~~ll~~~P~iL~~s~~~l~~~l~~L~~~G~~~~~~~~~~~~~~  355 (471)
                                                              +.++|.++.++.                            
T Consensus       315 ----------------------------------------~~k~p~~l~~s~----------------------------  326 (413)
T KOG1267|consen  315 ----------------------------------------ILKFPQLLRSSE----------------------------  326 (413)
T ss_pred             ----------------------------------------hhhhhhhhhccc----------------------------
Confidence                                                    334455544432                            


Q ss_pred             HhhcChhhHHHHHHHHHHcCCCHHHHHHHHHhCCcccccChh-hHHHHHHHHHhhcCCChHHHhhcCceeecccccchhh
Q 012091          356 VTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQILQYNHK-SLEEKMEYLIVGMGREVGELLAFPAFLGYKLDDRIKH  434 (471)
Q Consensus       356 ~~~~~~~~l~~ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~-~l~~k~~fL~~~mg~~~~~i~~~P~~L~~Sle~rI~p  434 (471)
                            ..+.++++++..+|++.+|+..|++++|+++.+|.+ .++.+.+|+.+.|+++.+.++.+|.+++|++|+|++|
T Consensus       327 ------~~l~~~ie~l~~~g~~~~q~~~~~~~~Pq~l~~s~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~y~le~ri~p  400 (413)
T KOG1267|consen  327 ------DKLKPRIEFLLSLGFSDVQILEMVKRFPQYLSFSLEKILKRKYEYLLKGLLRPLSALVSFPAFFGYSLEKRIRP  400 (413)
T ss_pred             ------hhhhhhHHHHHHcCCcHHHHHHHHhhccHHhhhhHHhhhhhhHHHHHHHcCchHHHHhccchhhccchhhcchh
Confidence                  234455666667788888888999999999999988 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc
Q 012091          435 RYEAKRKTLG  444 (471)
Q Consensus       435 R~~~L~~L~~  444 (471)
                      |+.+..++..
T Consensus       401 r~~~~~~~~~  410 (413)
T KOG1267|consen  401 RFNVIKKLGV  410 (413)
T ss_pred             HHHHHHHHhc
Confidence            9999877643

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.80  E-value=4.9e-19  Score=183.61  Aligned_cols=236  Identities=26%  Similarity=0.406  Sum_probs=196.2

Q ss_pred             hcCCCHHHHHHHHhhcccccccccCCcccHHHHHHHHhhcCCc-----hhhhhcccccccCccccHHHHHHHHHhCCCCC
Q 012091          162 QLGVPQETILHVLNNINLSKAVCLKSVEDIERTFAYLNPFGGA-----DLIVRCPKILNYDLDTQLIPKVRVLSELGGDD  236 (471)
Q Consensus       162 ~lGl~~~~i~~l~~~~~~p~~l~~~s~~~~~~~v~~L~~lG~~-----~~i~~~p~ll~~~~e~~l~~kv~~L~~~g~~~  236 (471)
                      .+|++...+......      +......+...+..+|+++|++     .++..+|.++.++.++.+.++..+|...|. +
T Consensus        68 s~~~~~~~~~~~~~~------~~~~~~~~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~-~  140 (413)
T KOG1267|consen   68 SLGLSIKLARKLSRE------VSSEDSVNPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGL-P  140 (413)
T ss_pred             ccccchhhHHHHHHH------HHhhhccCcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccCc-c
Confidence            567666666665432      3346667888999999999995     378888999999999999999999999996 5


Q ss_pred             hHHHHHHHHhcCcccccchh-cHHHHHHHhHHhh-CCCHHHHHHHHHhCCcccccCcccchhhhHHHHHhcCCChHhHHh
Q 012091          237 VDSTAAIVWKFPAILSYSLE-HIGKHVEFLRSFA-GLSDQEIFRIFLVFPAVISASRERKLRPRIDFLKQCGLGSEDIFK  314 (471)
Q Consensus       237 ~~~l~~~v~k~P~iL~~s~e-~l~~~~~fL~~~l-Gl~~~~i~~ii~~~P~lL~~sle~~l~pr~~~L~~~Gl~~~~i~~  314 (471)
                      ..++..+++..|.+|+.+.. ++.+.++|+.+.. +.....+.++....|...  ..+..+. ++++++++|....++..
T Consensus       141 ~s~l~~i~s~~~~il~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~~~~~--~~~~~v~-~~~~~~~lg~~~~~L~~  217 (413)
T KOG1267|consen  141 SSELSSIVSVVPKILLKSKGESLSTFIEFLKSIPPELLSSVVERLLTPVPSFL--LNENSVE-RLDIRRELGVKPRLLKS  217 (413)
T ss_pred             ccccchhhhccHHHHHhhcCCchhhHHHHhhccchhhhhhHHHHhcccccccc--ccccccc-cchhhHHhCCCHHHHHH
Confidence            67899999999999987765 8999999999964 466666766665555322  2233455 89999999999999999


Q ss_pred             HhhcCccccccChhhHHHHHHHHHHcCCCccchhHHHHHHHHhhcChhhHHHHHHHHHHcCCCHHHHHHHHHhCCccccc
Q 012091          315 FLTKAPLFLALSFDNIAIKLGFLVKIGYECRTRELAAAMGSVTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQILQY  394 (471)
Q Consensus       315 ll~~~P~iL~~s~~~l~~~l~~L~~~G~~~~~~~~~~~~~~~~~~~~~~l~~ki~~L~~lG~s~~ev~~~v~~~P~iL~~  394 (471)
                      ++..+|+.+.... .+...+.++.++|+++.+.++++++..+...+++++++++++|.++||+++||.+|+.++|++|++
T Consensus       218 ~l~~~~~~~~~~~-~l~~~~~~i~~~g~~p~~~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~  296 (413)
T KOG1267|consen  218 LLESQPRPVLLYL-KLKARLPFLLTLGFDPKTREFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQILGY  296 (413)
T ss_pred             HHhcCccceeeeh-hhhhhhhhHHHhccCCchhHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCchheEe
Confidence            9999999998775 788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHh
Q 012091          395 NHKSLEEKMEYLIV  408 (471)
Q Consensus       395 s~~~l~~k~~fL~~  408 (471)
                      |.+++..+++|+.+
T Consensus       297 s~~~~~~~~~~~~~  310 (413)
T KOG1267|consen  297 SVKKNLKTTEYLLK  310 (413)
T ss_pred             ehhhhhHHHHHHHh
Confidence            99864444444444

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=97.13  E-value=0.00035  Score=43.84  Aligned_cols=30  Identities=43%  Similarity=0.667  Sum_probs=27.0

Q ss_pred             HHHHhCCcccccChhhHHHHHHHHHhhcCCC
Q 012091          383 IMSKKHPQILQYNHKSLEEKMEYLIVGMGRE  413 (471)
Q Consensus       383 ~~v~~~P~iL~~s~~~l~~k~~fL~~~mg~~  413 (471)
                      +++.++|.+++++.++++++++||. ++|++
T Consensus         2 ~~~~~~P~il~~~~~~l~~~~~~l~-~~g~~   31 (31)
T smart00733        2 KILKKFPQILGYSEKKLKPKVEFLK-ELGFS   31 (31)
T ss_pred             chhhhCcCcccccHHHhhHHHHHHH-HcCCC
Confidence            4789999999999999999999999 68874

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=96.66  E-value=0.0014  Score=40.93  Aligned_cols=27  Identities=41%  Similarity=0.915  Sum_probs=13.7

Q ss_pred             HHhCCcccccCcccchhhhHHHHHhcCC
Q 012091          280 FLVFPAVISASRERKLRPRIDFLKQCGL  307 (471)
Q Consensus       280 i~~~P~lL~~sle~~l~pr~~~L~~~Gl  307 (471)
                      +.++|.+++++ +++++++++||+++|+
T Consensus         4 ~~~~P~il~~~-~~~l~~~~~~l~~~g~   30 (31)
T smart00733        4 LKKFPQILGYS-EKKLKPKVEFLKELGF   30 (31)
T ss_pred             hhhCcCccccc-HHHhhHHHHHHHHcCC
Confidence            44455555555 3445555555555544

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=94.53  E-value=0.16  Score=51.24  Aligned_cols=186  Identities=15%  Similarity=0.176  Sum_probs=107.6

Q ss_pred             HHHHHhcCcccccchhc-H-HHHHHHhHHhhCCCHHHHHHHHHhCCcccccCc-ccc--hhhhHHHHHhcCCChHhHHhH
Q 012091          241 AAIVWKFPAILSYSLEH-I-GKHVEFLRSFAGLSDQEIFRIFLVFPAVISASR-ERK--LRPRIDFLKQCGLGSEDIFKF  315 (471)
Q Consensus       241 ~~~v~k~P~iL~~s~e~-l-~~~~~fL~~~lGl~~~~i~~ii~~~P~lL~~sl-e~~--l~pr~~~L~~~Gl~~~~i~~l  315 (471)
                      ..++.+--.+|.+|.++ | -.++..++..+|++.+....++.++|..|...- ++.  .-.-+.|=.++.++.-+-...
T Consensus       100 ~~~v~rL~KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~~~~LeLv~Wd~~LAvs~~E~~~~  179 (335)
T PF11955_consen  100 PDLVERLRKLLMMSKDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVDLEDGGRYLELVSWDPELAVSALEKRAE  179 (335)
T ss_pred             HHHHHHHHHHhccCCCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEeecCCCCCEEEEeecCCccCcCccchhhh
Confidence            45566666788888873 3 677899999999999999999999999987532 111  000011111222322221111


Q ss_pred             -------------hhcCccccccCh-----hhHHHHHHHHHHcC----------CCccchhHH-HHHHH---HhhcChhh
Q 012091          316 -------------LTKAPLFLALSF-----DNIAIKLGFLVKIG----------YECRTRELA-AAMGS---VTRTSCEN  363 (471)
Q Consensus       316 -------------l~~~P~iL~~s~-----~~l~~~l~~L~~~G----------~~~~~~~~~-~~~~~---~~~~~~~~  363 (471)
                                   --.+|  +.++.     .+....++-++++-          +++++.... ++.+.   ++.++.++
T Consensus       180 ~~~~~~~~~~~~~~~~Fp--~~fp~G~~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~~EKRaVaVlHElLSLTveK  257 (335)
T PF11955_consen  180 KEYREKREDGFDRPLAFP--VSFPKGFRLKKKFREWLEEFQKLPYISPYEDASHLDPGSDEAEKRAVAVLHELLSLTVEK  257 (335)
T ss_pred             hccccccccccCCceeee--ecCCCCccccHHHHHHHHHHhcCCCCCCCCCccCCCCCChHHHhHHHHHHHHHHHhhhhh
Confidence                         11222  22222     24566666666653          333443332 23332   34454433


Q ss_pred             --HHHHHHHHH-HcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHhhcCCChHH-HhhcCceeecccccchhhHHHHH
Q 012091          364 --LQKVIGLFL-SYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREVGE-LLAFPAFLGYKLDDRIKHRYEAK  439 (471)
Q Consensus       364 --l~~ki~~L~-~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~mg~~~~~-i~~~P~~L~~Sle~rI~pR~~~L  439 (471)
                        ..+++..|+ ++|++ +.+..++.+||.|+.+|... +.-.-||.+  ++..++ |-++|.       -.++.|+.-|
T Consensus       258 r~~~~~L~~fr~ef~lp-~k~~~~l~rHPgIFYvS~kg-~~~TVfLrE--AY~~~~Liek~Pl-------~~~r~k~~~L  326 (335)
T PF11955_consen  258 RTEVDHLTHFRKEFGLP-QKFRRLLLRHPGIFYVSLKG-KRHTVFLRE--AYDGGELIEKHPL-------VVIREKFLEL  326 (335)
T ss_pred             hccHHHHHHHHHHhCCc-HHHHHHHHhCCCeEEEeccC-CceEEEEee--ccCCCCCCCCCch-------HHHHHHHHHH
Confidence              445677776 79999 56799999999999999752 223336766  555555 456664       3566665543

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes

Probab=85.12  E-value=1.4  Score=38.55  Aligned_cols=48  Identities=23%  Similarity=0.146  Sum_probs=33.0

Q ss_pred             hhHHHHHHHHHHcCCCccchhHHHHHHHHhhcChhhHHHHHHHHHHcCCCHHHHHHHHHhCCccc
Q 012091          328 DNIAIKLGFLVKIGYECRTRELAAAMGSVTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQIL  392 (471)
Q Consensus       328 ~~l~~~l~~L~~~G~~~~~~~~~~~~~~~~~~~~~~l~~ki~~L~~lG~s~~ev~~~v~~~P~iL  392 (471)
                      +.++..+.||++-.+                 ....+.+|++||++=|++++||.+.+.+.+.-=
T Consensus         4 ~li~~A~~FL~~p~V-----------------~~sp~~~k~~FL~sKGLt~~EI~~al~~a~~~~   51 (136)
T PF04695_consen    4 DLIEQAVKFLQDPKV-----------------RNSPLEKKIAFLESKGLTEEEIDEALGRAGSPP   51 (136)
T ss_dssp             HHHHHHHHHHCTTTC-----------------CCS-HHHHHHHHHHCT--HHHHHHHHHHHT--S
T ss_pred             HHHHHHHHHhCCccc-----------------ccCCHHHHHHHHHcCCCCHHHHHHHHHhcCCcc
Confidence            346666777765322                 234588999999999999999999999988755

Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=84.66  E-value=6.6  Score=35.68  Aligned_cols=17  Identities=18%  Similarity=0.229  Sum_probs=13.9

Q ss_pred             HHHHHHcCCCHHHHHHH
Q 012091          368 IGLFLSYGLSFADIYIM  384 (471)
Q Consensus       368 i~~L~~lG~s~~ev~~~  384 (471)
                      .+||.++|++++|+..+
T Consensus       151 ~~~l~~~g~~~~~~~~i  167 (172)
T cd04790         151 QEFLQSLGIPEDEIERI  167 (172)
T ss_pred             HHHHHHcCCCHHHHHHH
Confidence            47888999999997665

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	471
3opg_A	298	Crystal Structure Of Human Mitochondrial Transcript		8e-04

>pdb|3OPG|A Chain A, Crystal Structure Of Human Mitochondrial Transcription Termination Factor 3 Length = 298

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 90/209 (43%), Gaps = 15/209 (7%)
Query: 270 GLSDQEIFRIFLVFPAVISASRERKLRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSFDN 329
           G+ D ++        A+ S   E  L+ R+ +L        D+ + + KAP  L  S + 
Sbjct: 80  GIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVER 138
Query: 330 IAIKLGFLVKIGYEC---RTRELAAAMGSVTRTSCENLQKVIGLF-LSYGLSFADIYIMS 385
           +  +LGF  K   E    +TR+L   +  +   S E +++ + ++ L  G    +I  M 
Sbjct: 139 LDNRLGFFQK-ELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMI 197
Query: 386 KKHPQILQYNHKSLEEKMEYLIVGMGREVGELLAFPAFLGYKLDDRIKHRY--------E 437
            + P++L  N   L E  +++   M      ++ FP     +L  ++K R+         
Sbjct: 198 TRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRL-FKVKERHLFLTYLGRA 256
Query: 438 AKRKTLGDGLSINKLLSVSVERFSTKIKK 466
                  + +S++KL+S+  E F  +I K
Sbjct: 257 QYDPAKPNYISLDKLVSIPDEIFCEEIAK 285

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	471
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	3e-41
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	3e-24
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	4e-19
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	2e-15
3mva_O	343	Transcription termination factor, mitochondrial; a	3e-32
3mva_O	343	Transcription termination factor, mitochondrial; a	3e-25
3mva_O	343	Transcription termination factor, mitochondrial; a	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score =  147 bits (372), Expect = 3e-41
 Identities = 51/255 (20%), Positives = 97/255 (38%), Gaps = 16/255 (6%)

Query: 224 PKVRVLSELGGDDVDSTAAIVWKFPAILSYSLE-HIGKHVEFLRSFAGLSDQEIFRIFLV 282
             ++ L  LG D              +L    E  I + + FL+   G+ D ++      
Sbjct: 7   ETLQKLVLLGVDLSK-IEKHPEAANLLLRLDFEKDIKQMLLFLKDV-GIEDNQLGAFLTK 64

Query: 283 FPAVISASRERKLRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVK--- 339
             A+ S   E  L+ R+ +L        D+ + + KAP  L  S + +  +LGF  K   
Sbjct: 65  NHAIFSEDLE-NLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELE 123

Query: 340 IGYECRTRELAAAMGSVTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSL 399
           +  +     +      +T +     + +    L  G    +I  M  + P++L  N   L
Sbjct: 124 LSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKL 183

Query: 400 EEKMEYLIVGMGREVGELLAFPAFLGYKLDDRIKHRYE--------AKRKTLGDGLSINK 451
            E  +++   M      ++ FP     +L  ++K R+                + +S++K
Sbjct: 184 TETFDFVHNVMSIPHHIIVKFPQVFNTRL-FKVKERHLFLTYLGRAQYDPAKPNYISLDK 242

Query: 452 LLSVSVERFSTKIKK 466
           L+S+  E F  +I K
Sbjct: 243 LVSIPDEIFCEEIAK 257

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score =  100 bits (251), Expect = 3e-24
 Identities = 36/191 (18%), Positives = 73/191 (38%), Gaps = 9/191 (4%)

Query: 154 DQKVRLLLQLGVPQETILHVLNNINLSKAVCLKSVEDIERTFAYLNPFGG-----ADLIV 208
            + ++ L+ LGV    I       N    + L   +DI++   +L   G         + 
Sbjct: 6   SETLQKLVLLGVDLSKIEKHPEAAN--LLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLT 63

Query: 209 RCPKILNYDLDTQLIPKVRVLSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSF 268
           +   I + DL+  L  +V  L           A +V K P +L++S+E +   + F +  
Sbjct: 64  KNHAIFSEDLEN-LKTRVAYLHSKNFSK-ADVAQMVRKAPFLLNFSVERLDNRLGFFQKE 121

Query: 269 AGLSDQEIFRIFLVFPAVISASRERKLRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSFD 328
             LS ++   + +  P +++ S E        +  + G    +I   +T+ P  L  +  
Sbjct: 122 LELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKM 181

Query: 329 NIAIKLGFLVK 339
            +     F+  
Sbjct: 182 KLTETFDFVHN 192

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score = 86.0 bits (213), Expect = 4e-19
 Identities = 41/269 (15%), Positives = 91/269 (33%), Gaps = 49/269 (18%)

Query: 53  SVTLFQEIGLNEKEVDSLLEKNPTLRVTPLDK-MRSRILSLQSVGIKGMAFCRLISKDSN 111
           ++     +G++  +++   E    L     +K ++  +L L+ VGI+       ++K+  
Sbjct: 8   TLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHA 67

Query: 112 VLLAEEIDRLICFVRDDLDGNIEPMKLERLLTSTETKFLVGFDQKVRLLLQLGVPQETIL 171
           +                         LE L              +V  L      +  + 
Sbjct: 68  IFS---------------------EDLENLK------------TRVAYLHSKNFSKADVA 94

Query: 172 HVLNNINLSKAVCLKSVEDIERTFAYLNPFGG------ADLIVRCPKILNYDLDTQLIPK 225
            ++     +  +   SVE ++    +             DL+VR P++L   L+      
Sbjct: 95  QMVRK---APFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENM 151

Query: 226 VRVLSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPA 285
                ELG    +    ++ + P +L+ +   + +  +F+ +   +    I +    FP 
Sbjct: 152 KVYRLELGFKH-NEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVK----FPQ 206

Query: 286 VISASRERKLRPRIDFLKQCGLGSEDIFK 314
           V +    + ++ R  FL   G    D  K
Sbjct: 207 VFNTRLFK-VKERHLFLTYLGRAQYDPAK 234

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score = 75.2 bits (185), Expect = 2e-15
 Identities = 44/237 (18%), Positives = 93/237 (39%), Gaps = 23/237 (9%)

Query: 54  VTLFQEIGLNEKEVDSLLEKNPTLRVTPLDKMRSRILSLQSVGIKGMAFCRLISKDSNVL 113
           +   +++G+ + ++ + L KN  +    L+ +++R+  L S         +++ K   +L
Sbjct: 45  LLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKADVAQMVRKAPFLL 104

Query: 114 LA--EEIDRLICFVRDDLDGNIEP-----MKLERLLTSTETKFLVGFDQKVRLLLQLGVP 166
               E +D  + F + +L+ +++      ++L RLLT +        +      L+LG  
Sbjct: 105 NFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVK---ENMKVYRLELGFK 161

Query: 167 QETILHVLNNINLSKAVCLKSVEDIERTFAYLNPFGGADL--IVRCPKILNYDLDTQLIP 224
              I H++        +   +   +  TF +++         IV+ P++ N  L   +  
Sbjct: 162 HNEIQHMITR---IPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLFK-VKE 217

Query: 225 KVRVLSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFL 281
           +   L+ LG    D           ++S   E       F    A  S Q+ F  FL
Sbjct: 218 RHLFLTYLGRAQYDPAKPNYISLDKLVSIPDE------IFCEEIAKASVQD-FEKFL 267

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score =  124 bits (313), Expect = 3e-32
 Identities = 55/345 (15%), Positives = 121/345 (35%), Gaps = 33/345 (9%)

Query: 143 TSTETKFLVGFDQKVRLLLQLGVPQETILHVLNNINLSKAVCLKSVEDIERTFAYLNPFG 202
                   +  +  ++ LL +GV  +              V  + + + +    +L   G
Sbjct: 9   CHNTDSEPLKNEDLLKNLLTMGVDIDMA------RKRQPGVFHRMITNEQDLKMFLLSKG 62

Query: 203 G-----ADLIVRCPKILNYDLDTQLIPKVRVLSELGGDDVDSTAAIVWKFPAILSYSLEH 257
                 A +I R P+ +    +  L  +  +  ++   D++    I+ + P     S  +
Sbjct: 63  ASKEVIASIISRYPRAITRTPE-NLSKRWDLWRKIVTSDLE-IVNILERSPESFFRSNNN 120

Query: 258 IGK--HVEFLRSFAGLSDQEIFRIFLVFPAVISASRERKLRPRIDFLKQCGLGS------ 309
           +    +++FL S  GL+ + + R+    P   S S +   +  ++FL+  GL        
Sbjct: 121 LNLENNIKFLYSV-GLTRKCLCRLLTNAPRTFSNSLD-LNKQMVEFLQAAGLSLGHNDPA 178

Query: 310 EDIFKFLTKAPLFLALSFDNIAIKLGFLVKIG-------YECRTRELAAAMGSVTRTSCE 362
           + + K + K P  L  S   +   + FL                   A  +      +  
Sbjct: 179 DFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARR 238

Query: 363 NLQKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREVGELLAFPA 422
           +   +     S G +  ++      +P ++    K   +K++ L +     + +++  P 
Sbjct: 239 SYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCL-MEENISISQIIENPR 297

Query: 423 FLGYKLDDRIKHRYEA-KRKTLGDGLSINKLLSVSVERFSTKIKK 466
            L   +   +K R +               LLS S +R+  K+KK
Sbjct: 298 VLDSSI-STLKSRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKK 341

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score =  105 bits (262), Expect = 3e-25
 Identities = 51/324 (15%), Positives = 113/324 (34%), Gaps = 35/324 (10%)

Query: 66  EVDSLLEKNPTLRVTPLDKMRSRILSLQSVGIKGMAFCRLISKDSNVLLA--EEIDRLIC 123
           ++D   ++ P +    +   +   + L S G        +IS+    +    E + +   
Sbjct: 32  DIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRWD 91

Query: 124 FVRDDLDGNIEPMKL-----ERLLTSTETKFLVGFDQKVRLLLQLGVPQETILHVLNNIN 178
             R  +  ++E + +     E    S         +  ++ L  +G+ ++ +  +L N  
Sbjct: 92  LWRKIVTSDLEIVNILERSPESFFRSNNNL---NLENNIKFLYSVGLTRKCLCRLLTN-- 146

Query: 179 LSKAVCLKSVEDIERTFAYLNPFG-----------GADLIVRCPKILNYDLDTQLIPKVR 227
            +      S++  ++   +L   G              +I + P IL       +   + 
Sbjct: 147 -APRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTKR-VKANIE 204

Query: 228 VL-SELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFA---GLSDQEIFRIFLVF 283
            L S    +  +    I      IL  S ++  +    ++      G +++E+ +  L +
Sbjct: 205 FLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSY 264

Query: 284 PAVISASRERKLRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYE 343
           P VI  + + K   +ID L +  +    I +     P  L  S   +  ++  LV  G  
Sbjct: 265 PDVIFLAEK-KFNDKIDCLMEENISISQIIEN----PRVLDSSISTLKSRIKELVNAGCN 319

Query: 344 CRTRELAAAMGSVTRTSCENLQKV 367
             T  +     S  R     L+K+
Sbjct: 320 LSTLNITLLSWSKKR-YEAKLKKL 342

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 6/146 (4%)

Query: 326 SFDNIAIKLGFLVKIGYECRTRELAAAMGSVTRTSCENLQKVIGLFLSYGLSFADIYIMS 385
                   L  L+ +G +            V      N Q +    LS G S   I  + 
Sbjct: 15  EPLKNEDLLKNLLTMGVDID--MARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASII 72

Query: 386 KKHPQILQYNHKSLEEKMEYL--IVGMGREVGELLA-FPAFLGYKLDDRIKHRYEAKRKT 442
            ++P+ +    ++L ++ +    IV    E+  +L   P       ++           +
Sbjct: 73  SRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYS 132

Query: 443 LG-DGLSINKLLSVSVERFSTKIKKN 467
           +G     + +LL+ +   FS  +  N
Sbjct: 133 VGLTRKCLCRLLTNAPRTFSNSLDLN 158

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 74.1 bits (181), Expect = 4e-14
 Identities = 74/427 (17%), Positives = 136/427 (31%), Gaps = 85/427 (19%)

Query: 64  EKEVDSLLEKNPTL------RVTPLDKMRSRILSLQS---VGIKGMAFCRLISKDS---N 111
            ++ D L   N         R+ P  K+R  +L L+    V I G+       K     +
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS---GKTWVALD 169

Query: 112 VLLAEEIDRLICF------VRDDLDGNIEPMKLERLLTSTETKFLVGFDQKVRLLLQLGV 165
           V L+ ++   + F      +++          L++LL   +  +    D    + L++  
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 166 PQETILHVLNNINLSKA-VCLKSVEDIERTFAYLNPFGGADLIVRCPKILNYDLDTQLIP 224
            Q  +  +L +       + L +V++ +      N F      + C KIL   L T+   
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAK----AWNAFN-----LSC-KIL---LTTRFKQ 276

Query: 225 KVRVLSELGGDDVDSTAAIVWKFPAILSYSLEHI------GKHVEFLRSFAGLSDQEIFR 278
               LS      +                SL+H        +    L  +     Q++ R
Sbjct: 277 VTDFLSAATTTHI----------------SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 279 -IFLVFPAVIS--ASRERKLRPRIDFLKQCGLGS-----EDIFKFLTKA---PLFLALS- 326
            +    P  +S  A   R      D  K           E     L  A    +F  LS 
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 327 F-DNIAIKLGFLVKIGYECRTRELAAAMGSVTRTSCENLQKVIGLFLSYGLSFADIYIMS 385
           F  +  I    L  I ++    ++   +  + + S    Q          +S   IY+  
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK-----ESTISIPSIYLEL 435

Query: 386 KKHPQILQYNHKSLEEKMEYLIVGMGREVGELLA------FPAFLGYKLDD-RIKHRYEA 438
           K   +     H+S+ +   Y I     +  +L+       F + +G+ L +     R   
Sbjct: 436 KVKLENEYALHRSIVDH--YNIP-KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492

Query: 439 KRKTLGD 445
            R    D
Sbjct: 493 FRMVFLD 499

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 5e-09
 Identities = 65/375 (17%), Positives = 109/375 (29%), Gaps = 116/375 (30%)

Query: 27  NVFSTN-ADALDL---LLIFLQRMNWFAFVSVTLFQEI-------GLNEKEVDSLLEKN- 74
           NV +    +A +L   +L+  +      F+S      I        L   EV SLL K  
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 75  -------P--TLRVTPL---------DKMRSRILSLQSVGIKGMAFCRLISKDSNVLLAE 116
                  P   L   P              +   + + V    +    +I    NVL   
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT--TIIESSLNVLEPA 369

Query: 117 EI----DRLICFVRDDLDGNIEPMKLERL---LTSTETKFLVGFDQKVRLLLQLGVPQET 169
           E     DRL  F       +I  + L  +   +  ++   +V    K   L++    + T
Sbjct: 370 EYRKMFDRLSVF-PPSA--HIPTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQPKEST 425

Query: 170 I-LHVLNNINLSKAVCLKSVEDIERTFAYLNPFGGADLIVRCPKILNYDLDTQLIPKVRV 228
           I +                   I     YL      +L V+      Y L   ++    +
Sbjct: 426 ISIP-----------------SI-----YL------ELKVKLEN--EYALHRSIVDHYNI 455

Query: 229 LSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHV----------EFLRSFAGLS--DQEI 276
                 DD+          P +  Y   HIG H+           F   F      +Q+I
Sbjct: 456 PKTFDSDDLIP--------PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507

Query: 277 -------------------FRIFLVFPAVISASRERKLRPRIDFLKQCGLGSEDIFKFLT 317
                               + +  +        ER +   +DFL +     E++     
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE---ENLICSKY 564

Query: 318 KAPLFLALSFDNIAI 332
              L +AL  ++ AI
Sbjct: 565 TDLLRIALMAEDEAI 579

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	471
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	99.97
4fp9_B	335	Mterf domain-containing protein 2; modification en	99.89
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	99.59
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	98.5
3ff5_A	54	PEX14P, peroxisomal biogenesis factor 14; protein	91.86
2w84_A	70	Peroxisomal membrane protein PEX14; zellweger synd	87.11
3ff5_A	54	PEX14P, peroxisomal biogenesis factor 14; protein	84.98

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=3.3e-47  Score=383.69  Aligned_cols=307  Identities=19%  Similarity=0.287  Sum_probs=267.4

Q ss_pred             HHHHHcCCChHHHHHHHHhCCCCCCCCchhhHHHHHHHHhcCCCchhhhhhhhccccccchh--hHHHHHHHHHhhccCC
Q 012091           55 TLFQEIGLNEKEVDSLLEKNPTLRVTPLDKMRSRILSLQSVGIKGMAFCRLISKDSNVLLAE--EIDRLICFVRDDLDGN  132 (471)
Q Consensus        55 ~fL~~lGls~~~i~~~v~~~P~ll~~~~~~l~~~v~~L~~lGls~~~i~~ll~~~P~iL~~~--~l~~~l~~l~~~l~gs  132 (471)
                      +||.++|++.++   +++.+|.++..++++..++++||+++|++.++|++++.++|.+|.++  ++.             
T Consensus        24 ~~L~s~Gl~~~~---~~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l~-------------   87 (343)
T 3mva_O           24 KNLLTMGVDIDM---ARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLS-------------   87 (343)
T ss_dssp             HHHHHHTCCHHH---HHHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHHHHH-------------
T ss_pred             HHHHHcCCCHHH---HHHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHHHHH-------------
Confidence            999999999754   56789999999998899999999999999999999999999999764  222             


Q ss_pred             CChhhHHHHhhhccccccccchhHHHHHHhcCCCHHHHHHHHhhcccccccccCCcccHHHHHHHHhhcCCchhhhhccc
Q 012091          133 IEPMKLERLLTSTETKFLVGFDQKVRLLLQLGVPQETILHVLNNINLSKAVCLKSVEDIERTFAYLNPFGGADLIVRCPK  212 (471)
Q Consensus       133 ~~~~~l~~~l~~~~~~~~l~~~~~v~~L~~lGl~~~~i~~l~~~~~~p~~l~~~s~~~~~~~v~~L~~lG~~~~i~~~p~  212 (471)
                                            |+++||+++|++.+++++++.+  +|+++.. +                         
T Consensus        88 ----------------------p~l~fL~~lG~s~~~i~~il~~--~P~iLl~-s-------------------------  117 (343)
T 3mva_O           88 ----------------------KRWDLWRKIVTSDLEIVNILER--SPESFFR-S-------------------------  117 (343)
T ss_dssp             ----------------------HHHHHHTTTSSCHHHHHHHHHH--CSHHHHS-C-------------------------
T ss_pred             ----------------------HHHHHHHHcCCCHHHHHHHHHH--CCHHHhC-C-------------------------
Confidence                                  4667777899999999999887  5774331 1                         


Q ss_pred             ccccCccccHHHHHHHHHhCCCCChHHHHHHHHhcCcccccchhcHHHHHHHhHHh---hCCC--HHHHHHHHHhCCccc
Q 012091          213 ILNYDLDTQLIPKVRVLSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSF---AGLS--DQEIFRIFLVFPAVI  287 (471)
Q Consensus       213 ll~~~~e~~l~~kv~~L~~~g~~~~~~l~~~v~k~P~iL~~s~e~l~~~~~fL~~~---lGl~--~~~i~~ii~~~P~lL  287 (471)
                          ..++++.|+++||+++|+ +++++++++.++|.++++++++.+++++||.+.   +|.+  .+.|.+++.++|.++
T Consensus       118 ----~~~~~l~p~v~fL~~lGl-~~~~i~~ll~~~P~il~~~~e~~~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL  192 (343)
T 3mva_O          118 ----NNNLNLENNIKFLYSVGL-TRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFIL  192 (343)
T ss_dssp             ----CCHHHHHHHHHHHHHTTC-CHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGG
T ss_pred             ----ChHhhHHHHHHHHHHhCC-CHHHHHHHHHhCChhheeCHHHhhHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHh
Confidence                112479999999999986 789999999999999999999889999999874   2333  778999999999999


Q ss_pred             ccCcccchhhhHHHHHh-cCCChHhHHhHhhcC-ccccccChhhHHHHHHHHHHcCCCccchhHHHHHHHHhhcChhhHH
Q 012091          288 SASRERKLRPRIDFLKQ-CGLGSEDIFKFLTKA-PLFLALSFDNIAIKLGFLVKIGYECRTRELAAAMGSVTRTSCENLQ  365 (471)
Q Consensus       288 ~~sle~~l~pr~~~L~~-~Gl~~~~i~~ll~~~-P~iL~~s~~~l~~~l~~L~~~G~~~~~~~~~~~~~~~~~~~~~~l~  365 (471)
                      ++| +++++++++||++ +|++++++..++.+. |.+++++.+.+++++.++.                           
T Consensus       193 ~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~---------------------------  244 (343)
T 3mva_O          193 IQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIK---------------------------  244 (343)
T ss_dssp             GSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHH---------------------------
T ss_pred             cCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHH---------------------------
Confidence            999 7889999999995 999999999998885 5889999887777666655                           


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHhhcCCChHHHhhcCceeecccccchhhHHHHHHHHhcC
Q 012091          366 KVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREVGELLAFPAFLGYKLDDRIKHRYEAKRKTLGD  445 (471)
Q Consensus       366 ~ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~L~~Sle~rI~pR~~~L~~L~~~  445 (471)
                         ++|.++||+++|+..|+.++|++|++|.++|++|++||.+ ||+++++|+++|.+|+||+| ||+|||++|   ++.
T Consensus       245 ---e~~~~lG~s~~ev~~~v~~~P~il~~s~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~~L---~~~  316 (343)
T 3mva_O          245 ---EKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRIKEL---VNA  316 (343)
T ss_dssp             ---HHHHTTTCCHHHHHHHHHTCGGGGGSCHHHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHHHH---HTT
T ss_pred             ---HHHHHcCCCHHHHHHHHHhCCchhcccHHHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHHHH---HHC
Confidence               3556899999999999999999999999999999999999 99999999999999999999 999999875   456


Q ss_pred             C--CCch--hhhcccHHHHHHHHhhCC
Q 012091          446 G--LSIN--KLLSVSVERFSTKIKKNP  468 (471)
Q Consensus       446 g--~~l~--~~l~~sd~~F~~~~~k~~  468 (471)
                      |  +++.  ++|++||++|+++|+|.+
T Consensus       317 g~~~~~~~~~~l~~s~~~F~~~~~~~~  343 (343)
T 3mva_O          317 GCNLSTLNITLLSWSKKRYEAKLKKLS  343 (343)
T ss_dssp             TCCSSSSCGGGGGSCHHHHHHHHHHTC
T ss_pred             CCCCCCCcchhhcCCHHHHHHHHhccC
Confidence            6  5666  999999999999999864

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=2.5e-43  Score=344.16  Aligned_cols=222  Identities=23%  Similarity=0.351  Sum_probs=204.9

Q ss_pred             ccccccCccccHHHHHHHHHhCCCCChHHHHHHHHhcCcccccchhcHHHHHHHhHHhhCCCHHHHHHHHHhCCcccccC
Q 012091          211 PKILNYDLDTQLIPKVRVLSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISAS  290 (471)
Q Consensus       211 p~ll~~~~e~~l~~kv~~L~~~g~~~~~~l~~~v~k~P~iL~~s~e~l~~~~~fL~~~lGl~~~~i~~ii~~~P~lL~~s  290 (471)
                      |.++.+++++++.|+++||.++|+ +++++++++.++|.+++++.++++++++||++ +|++.++|++++.++|++|++|
T Consensus        30 p~lL~~~~~~~l~~~l~fL~~lG~-~~~~i~~il~~~P~lL~~~~e~l~p~v~~L~~-~Gls~~~i~~~l~~~P~lL~~s  107 (270)
T 3m66_A           30 NLLLRLDFEKDIKQMLLFLKDVGI-EDNQLGAFLTKNHAIFSEDLENLKTRVAYLHS-KNFSKADVAQMVRKAPFLLNFS  107 (270)
T ss_dssp             HHHHTCCHHHHTHHHHHHHHHHTC-CGGGHHHHHHHCTTGGGSCHHHHHHHHHHHHH-TTCCHHHHHHHHHHSTTGGGSC
T ss_pred             hhhhccChhhhHHHHHHHHHHcCC-CHHHHHHHHHhCChhhhCCHHHHHHHHHHHHH-cCCCHHHHHHHHHhCCHHHcCC
Confidence            444888888899999999999996 68899999999999999999999999999997 5999999999999999999999


Q ss_pred             cccchhhhHHHH-HhcCCChHhHHhHhhcCccccccChhhHHHHHHHHHHcCCCccchhHHHHHHHHhhcChhhHHHHHH
Q 012091          291 RERKLRPRIDFL-KQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECRTRELAAAMGSVTRTSCENLQKVIG  369 (471)
Q Consensus       291 le~~l~pr~~~L-~~~Gl~~~~i~~ll~~~P~iL~~s~~~l~~~l~~L~~~G~~~~~~~~~~~~~~~~~~~~~~l~~ki~  369 (471)
                      +++ ++|+++|| +++|++++++.+++.++|++++++.+++++                                  +++
T Consensus       108 ~~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e~~~~----------------------------------~v~  152 (270)
T 3m66_A          108 VER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKE----------------------------------NMK  152 (270)
T ss_dssp             HHH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSHHHHH----------------------------------HHH
T ss_pred             HHH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechHHHHH----------------------------------HHH
Confidence            985 99999999 579999999999999999999999776554                                  444


Q ss_pred             HH-HHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHhhcCCChHHHhhcCceeecccccchhhHHHHHHHHhcCC--
Q 012091          370 LF-LSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREVGELLAFPAFLGYKLDDRIKHRYEAKRKTLGDG--  446 (471)
Q Consensus       370 ~L-~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~L~~Sle~rI~pR~~~L~~L~~~g--  446 (471)
                      ++ .++|++.+||.+|+.++|+++++|.+++++|++||.++||+++++|+++|.+|+||+| ||+|||.++++|+++|  
T Consensus       153 ~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sle-ri~pR~~~l~~L~~~g~~  231 (270)
T 3m66_A          153 VYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYD  231 (270)
T ss_dssp             HHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHH-HHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHHHhCchHhhCCHH-HHHHHHHHHHHhhccCCC
Confidence            43 4899999999999999999999999999999999999999999999999999999998 9999999999998877  


Q ss_pred             ------CCchhhhcccHHHHHHHHhhCCCC
Q 012091          447 ------LSINKLLSVSVERFSTKIKKNPIH  470 (471)
Q Consensus       447 ------~~l~~~l~~sd~~F~~~~~k~~~~  470 (471)
                            +++.+++.+||++|+++|++.+++
T Consensus       232 ~~~~~~~~L~~~l~~sd~~F~~~~~~~~~e  261 (270)
T 3m66_A          232 PAKPNYISLDKLVSIPDEIFCEEIAKASVQ  261 (270)
T ss_dssp             TTSSSCCCHHHHHHSCHHHHHHHTTCSCHH
T ss_pred             CCCCCCCCHHHHhcCCHHHHHHHHhcCCHH
Confidence                  467789999999999999998853

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=1.7e-36  Score=305.40  Aligned_cols=264  Identities=15%  Similarity=0.284  Sum_probs=234.8

Q ss_pred             cccccccccchHHHHHHHHHHHhccchhHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCchhhHHHHHHHHhcCCCchhh
Q 012091           23 PHWLNVFSTNADALDLLLIFLQRMNWFAFVSVTLFQEIGLNEKEVDSLLEKNPTLRVTPLDKMRSRILSLQSVGIKGMAF  102 (471)
Q Consensus        23 ~h~~~~~~~~~d~v~~~l~~~~~~~~~~~~~~~fL~~lGls~~~i~~~v~~~P~ll~~~~~~l~~~v~~L~~lGls~~~i  102 (471)
                      -|++|  |++||+|   +              +||+++|++++||++++.++|.+|+++++++.|+++||+++|++.+++
T Consensus        43 l~~~s--~~~~~~v---l--------------~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l~fL~~lG~s~~~i  103 (343)
T 3mva_O           43 VFHRM--ITNEQDL---K--------------MFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEI  103 (343)
T ss_dssp             GGGCS--CCCHHHH---H--------------HHHHHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHHHHHTTTSSCHHHH
T ss_pred             hhccC--cccHHHH---H--------------HHHHHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHcCCCHHHH
Confidence            47888  8899998   8              999999999999999999999999999888999999999999999999


Q ss_pred             hhhhhccccccchhhHHHHHHHHHhhccCCCChhhHHHHhhhccccccccchhHHHHHHhcCCCHHHHHHHHhhcccccc
Q 012091          103 CRLISKDSNVLLAEEIDRLICFVRDDLDGNIEPMKLERLLTSTETKFLVGFDQKVRLLLQLGVPQETILHVLNNINLSKA  182 (471)
Q Consensus       103 ~~ll~~~P~iL~~~~l~~~l~~l~~~l~gs~~~~~l~~~l~~~~~~~~l~~~~~v~~L~~lGl~~~~i~~l~~~~~~p~~  182 (471)
                      ++++.++|.+|..                +...+               ...||++||+++|++.++|++++.+  +|++
T Consensus       104 ~~il~~~P~iLl~----------------s~~~~---------------~l~p~v~fL~~lGl~~~~i~~ll~~--~P~i  150 (343)
T 3mva_O          104 VNILERSPESFFR----------------SNNNL---------------NLENNIKFLYSVGLTRKCLCRLLTN--APRT  150 (343)
T ss_dssp             HHHHHHCSHHHHS----------------CCCHH---------------HHHHHHHHHHHTTCCHHHHHHHHHH--CGGG
T ss_pred             HHHHHHCCHHHhC----------------CChHh---------------hHHHHHHHHHHhCCCHHHHHHHHHh--CChh
Confidence            9999999995421                21000               1236899999999999999999998  7998


Q ss_pred             cccCCcccHHHHHHHHhhcCCc-----------hhhhhcccccccCccccHHHHHHHHHh-CCCCChHHHHHHHHhcC-c
Q 012091          183 VCLKSVEDIERTFAYLNPFGGA-----------DLIVRCPKILNYDLDTQLIPKVRVLSE-LGGDDVDSTAAIVWKFP-A  249 (471)
Q Consensus       183 l~~~s~~~~~~~v~~L~~lG~~-----------~~i~~~p~ll~~~~e~~l~~kv~~L~~-~g~~~~~~l~~~v~k~P-~  249 (471)
                      ++ .++++.++.+++|+++|++           .++.++|.++..+ +++++++++||++ +|+ +++++..++.+.| .
T Consensus       151 l~-~~~e~~~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~-~~~~~~~~i~~~~~~  227 (343)
T 3mva_O          151 FS-NSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNL-NSEELLVLICGPGAE  227 (343)
T ss_dssp             GT-SCHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCC-CHHHHHHHHHTTTGG
T ss_pred             he-eCHHHhhHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCC-CHHHHHHHHhcCChH
Confidence            87 8899889999999987752           2788999999999 7799999999996 885 7888999998864 8


Q ss_pred             ccccchhcHHHHHHHhHH---hhCCCHHHHHHHHHhCCcccccCcccchhhhHHHHHhcCCChHhHHhHhhcCccccccC
Q 012091          250 ILSYSLEHIGKHVEFLRS---FAGLSDQEIFRIFLVFPAVISASRERKLRPRIDFLKQCGLGSEDIFKFLTKAPLFLALS  326 (471)
Q Consensus       250 iL~~s~e~l~~~~~fL~~---~lGl~~~~i~~ii~~~P~lL~~sle~~l~pr~~~L~~~Gl~~~~i~~ll~~~P~iL~~s  326 (471)
                      +++++.+.+++++.|+.+   .+|++.++|..++.++|+++++|.++ ++++++||.+.|++.++|    .++|.+|++|
T Consensus       228 ~l~~s~~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~~~-l~~k~~fl~~mg~~~~~i----~~~P~~l~~s  302 (343)
T 3mva_O          228 ILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKK-FNDKIDCLMEENISISQI----IENPRVLDSS  302 (343)
T ss_dssp             GGGCCTTHHHHHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSCHHH-HHHHHHHHHTTTCCHHHH----HHSGGGGGSC
T ss_pred             HhhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCchhcccHHH-HHHHHHHHHHcCCCHHHH----HhCCHHHhcC
Confidence            889999999999999886   57999999999999999999999986 999999999999998776    5799999999


Q ss_pred             hhhHHHHHHHHHHcCCCccc
Q 012091          327 FDNIAIKLGFLVKIGYECRT  346 (471)
Q Consensus       327 ~~~l~~~l~~L~~~G~~~~~  346 (471)
                      .|+++++.++|++.|++...
T Consensus       303 leri~~R~~~L~~~g~~~~~  322 (343)
T 3mva_O          303 ISTLKSRIKELVNAGCNLST  322 (343)
T ss_dssp             HHHHHHHHHHHHTTTCCSSS
T ss_pred             HHHHHHHHHHHHHCCCCCCC
Confidence            99999999999999998764

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=100.00  E-value=3.4e-35  Score=292.00  Aligned_cols=208  Identities=16%  Similarity=0.242  Sum_probs=188.4

Q ss_pred             cHHHHHHHHHhCCCCChHHHHHHHHhcCcccccchhcHHHHHHHhHHhhCCCHHHHHHHHHhCCcccccCcccchhhhHH
Q 012091          221 QLIPKVRVLSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRERKLRPRID  300 (471)
Q Consensus       221 ~l~~kv~~L~~~g~~~~~~l~~~v~k~P~iL~~s~e~l~~~~~fL~~~lGl~~~~i~~ii~~~P~lL~~sle~~l~pr~~  300 (471)
                      ++...+..|.++|+ ++++++.++.++|.++.   +++.+++.||... |++.++|+++|.++|++|++|++ +++|+++
T Consensus        45 ~~e~~l~~L~d~Gf-s~~~i~~il~~~P~il~---~~l~~~i~~L~~L-Gls~e~V~kiL~k~P~lL~~s~e-~L~~~l~  118 (335)
T 4fp9_B           45 ELERVMSSLLDMGF-SNAHINELLSVRRGASL---QQLLDIISEFILL-GLNPEPVCVVLKKSPQLLKLPIM-QMRKRSS  118 (335)
T ss_dssp             HHHHHHHHHHHTTC-CHHHHHHHHHHCSSCCH---HHHHHHHHHHHHT-TCCHHHHHHHHHHCGGGGGSCHH-HHHHHHH
T ss_pred             cHHHHHHHHHHCCC-CHHHHHHHHHhCcccch---hHHHHHHHHHHHc-CCCHHHHHHHHHhChhhccCCHH-HHHHHHH
Confidence            47778889999996 78999999999999874   4577889999885 99999999999999999999996 5999999


Q ss_pred             HHHhcCCChHhHHhHhhcCccccccChhhHHHHHHHHHHcCCCccchhHHHHHHHHhhcChhhHHHHHHHHHHcCCCHHH
Q 012091          301 FLKQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECRTRELAAAMGSVTRTSCENLQKVIGLFLSYGLSFAD  380 (471)
Q Consensus       301 ~L~~~Gl~~~~i~~ll~~~P~iL~~s~~~l~~~l~~L~~~G~~~~~~~~~~~~~~~~~~~~~~l~~ki~~L~~lG~s~~e  380 (471)
                      ||+++|++.+++++++.++|++|+++.+++..++.+|.                                 .++|||.+|
T Consensus       119 fL~~lGl~~~~i~~ll~~~P~lL~~s~e~i~~~v~~L~---------------------------------~~lGfS~~e  165 (335)
T 4fp9_B          119 YLQKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLK---------------------------------EKCLFTVQQ  165 (335)
T ss_dssp             HHHHTTCTTTTHHHHHHHCGGGGTSCHHHHHHHHHHHH---------------------------------HTSCCCHHH
T ss_pred             HHHHcCCCHHHHHHHHHhCchhhccChHHHHHHHHHHH---------------------------------HHcCCCHHH
Confidence            99999999999999999999999999877655444443                                 379999999


Q ss_pred             HHHHHHhCCcccccChhhHHHHHHHHHhhcCCChHHHhhcCceeecccccchhhHHHHHHHHhcC------------CCC
Q 012091          381 IYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREVGELLAFPAFLGYKLDDRIKHRYEAKRKTLGD------------GLS  448 (471)
Q Consensus       381 v~~~v~~~P~iL~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~L~~Sle~rI~pR~~~L~~L~~~------------g~~  448 (471)
                      |..||.++|+||++|.++|++|++||+++||+++++|++ |.+|+||++ ||+|||.||+.|...            +++
T Consensus       166 v~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~nps  243 (335)
T 4fp9_B          166 VTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPL  243 (335)
T ss_dssp             HHHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCC
T ss_pred             HHHHHHhCChhhhCCHHHHHHHHHHHHHHhCCCHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCcc
Confidence            999999999999999999999999999999999999997 999999998 999999999988542            247


Q ss_pred             chhhhcccHHHHHHHHhhCCC
Q 012091          449 INKLLSVSVERFSTKIKKNPI  469 (471)
Q Consensus       449 l~~~l~~sd~~F~~~~~k~~~  469 (471)
                      |.++++.||++|+.+++|.|+
T Consensus       244 L~~il~~sd~~F~~~vA~~s~  264 (335)
T 4fp9_B          244 LKDILRVSEAEFLARTACTSV  264 (335)
T ss_dssp             HHHHTTSCHHHHHHHTSCCCH
T ss_pred             HHHHHcCCHHHHHHHHHhcCH
Confidence            899999999999999999985

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=99.97  E-value=1.2e-30  Score=254.32  Aligned_cols=215  Identities=18%  Similarity=0.340  Sum_probs=186.1

Q ss_pred             HHHHHHHHcCCChHHHHHHHHhCCCCCCCCchh-hHHHHHHHHhcCCCchhhhhhhhccccccchhhHHHHHHHHHhhcc
Q 012091           52 VSVTLFQEIGLNEKEVDSLLEKNPTLRVTPLDK-MRSRILSLQSVGIKGMAFCRLISKDSNVLLAEEIDRLICFVRDDLD  130 (471)
Q Consensus        52 ~~~~fL~~lGls~~~i~~~v~~~P~ll~~~~~~-l~~~v~~L~~lGls~~~i~~ll~~~P~iL~~~~l~~~l~~l~~~l~  130 (471)
                      .++++|.++|++.++|++....+|.++++++++ +.|+++||+++|+++++|++++.++|.+|.++              
T Consensus         7 ~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~--------------   72 (270)
T 3m66_A            7 ETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSED--------------   72 (270)
T ss_dssp             HHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSC--------------
T ss_pred             HHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCC--------------
Confidence            356999999999999977666666669999975 99999999999999999999999999999864              


Q ss_pred             CCCChhhHHHHhhhccccccccchhHHHHHHhcCCCHHHHHHHHhhcccccccccCCcccHHHHHHHH-hhcCCc-----
Q 012091          131 GNIEPMKLERLLTSTETKFLVGFDQKVRLLLQLGVPQETILHVLNNINLSKAVCLKSVEDIERTFAYL-NPFGGA-----  204 (471)
Q Consensus       131 gs~~~~~l~~~l~~~~~~~~l~~~~~v~~L~~lGl~~~~i~~l~~~~~~p~~l~~~s~~~~~~~v~~L-~~lG~~-----  204 (471)
                        +  +   + +           .|+++||+++|++.+++++++.+  +|+++. .+++++++.+++| +++|++     
T Consensus        73 --~--e---~-l-----------~p~v~~L~~~Gls~~~i~~~l~~--~P~lL~-~s~~~l~~~v~~L~~~lG~~~~~i~  130 (270)
T 3m66_A           73 --L--E---N-L-----------KTRVAYLHSKNFSKADVAQMVRK--APFLLN-FSVERLDNRLGFFQKELELSVKKTR  130 (270)
T ss_dssp             --H--H---H-H-----------HHHHHHHHHTTCCHHHHHHHHHH--STTGGG-SCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             --H--H---H-H-----------HHHHHHHHHcCCCHHHHHHHHHh--CCHHHc-CCHHHHHHHHHHHHHHhCCCHHHHH
Confidence              0  1   1 1           25788899999999999999998  699887 8888999999999 579985     


Q ss_pred             hhhhhcccccccCccccHHHHHHHH-HhCCCCChHHHHHHHHhcCcccccchhcHHHHHHHhHHhhCCCHHHHHHHHHhC
Q 012091          205 DLIVRCPKILNYDLDTQLIPKVRVL-SELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVF  283 (471)
Q Consensus       205 ~~i~~~p~ll~~~~e~~l~~kv~~L-~~~g~~~~~~l~~~v~k~P~iL~~s~e~l~~~~~fL~~~lGl~~~~i~~ii~~~  283 (471)
                      +++.++|.++..+.+ +++++++++ .++| ++++++..++.++|.++++|.++++++++||.+++|++.++|.+    +
T Consensus       131 ~ll~~~P~il~~s~e-~~~~~v~~l~~~~G-~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~----~  204 (270)
T 3m66_A          131 DLVVRLPRLLTGSLE-PVKENMKVYRLELG-FKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVK----F  204 (270)
T ss_dssp             HHHHHSGGGGTSCSH-HHHHHHHHHHHTSC-CCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHHHH----C
T ss_pred             HHHHhCCcceeechH-HHHHHHHHHHHHcC-CCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHHHh----C
Confidence            378899999999876 699999975 6787 58899999999999999999999999999999999999998887    9


Q ss_pred             CcccccCcccchhhhHHHHHh---cCCCh
Q 012091          284 PAVISASRERKLRPRIDFLKQ---CGLGS  309 (471)
Q Consensus       284 P~lL~~sle~~l~pr~~~L~~---~Gl~~  309 (471)
                      |++|+||+| +++||..+++.   .|+..
T Consensus       205 P~~l~~Sle-ri~pR~~~l~~L~~~g~~~  232 (270)
T 3m66_A          205 PQVFNTRLF-KVKERHLFLTYLGRAQYDP  232 (270)
T ss_dssp             GGGGGSCHH-HHHHHHHHHHHHTCCCCCT
T ss_pred             chHhhCCHH-HHHHHHHHHHHhhccCCCC
Confidence            999999998 89999887776   45543

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=99.89  E-value=1.5e-22  Score=201.10  Aligned_cols=179  Identities=21%  Similarity=0.402  Sum_probs=151.5

Q ss_pred             hHHHHHHhcCCCHHHHHHHHhhcccccccccCCcccHHHHHHHHhhcCCchhhhhcccccccCccccHHHHHHHHHhCCC
Q 012091          155 QKVRLLLQLGVPQETILHVLNNINLSKAVCLKSVEDIERTFAYLNPFGGADLIVRCPKILNYDLDTQLIPKVRVLSELGG  234 (471)
Q Consensus       155 ~~v~~L~~lGl~~~~i~~l~~~~~~p~~l~~~s~~~~~~~v~~L~~lG~~~~i~~~p~ll~~~~e~~l~~kv~~L~~~g~  234 (471)
                      .+++.|.++|+++.+|++++..  +|.++                                   ..++.+++.+|..+|+
T Consensus        48 ~~l~~L~d~Gfs~~~i~~il~~--~P~il-----------------------------------~~~l~~~i~~L~~LGl   90 (335)
T 4fp9_B           48 RVMSSLLDMGFSNAHINELLSV--RRGAS-----------------------------------LQQLLDIISEFILLGL   90 (335)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHH--CSSCC-----------------------------------HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCCHHHHHHHHHh--Ccccc-----------------------------------hhHHHHHHHHHHHcCC
Confidence            4666677777777777777765  45433                                   2357888999999986


Q ss_pred             CChHHHHHHHHhcCcccccchhcHHHHHHHhHHhhCCCHHHHHHHHHhCCcccccCcccchhhhHHHHH-hcCCChHhHH
Q 012091          235 DDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRERKLRPRIDFLK-QCGLGSEDIF  313 (471)
Q Consensus       235 ~~~~~l~~~v~k~P~iL~~s~e~l~~~~~fL~~~lGl~~~~i~~ii~~~P~lL~~sle~~l~pr~~~L~-~~Gl~~~~i~  313 (471)
                       +.++|.+|+.++|.+|++|.++|+++++||++ +|++..+|.+++.++|++|+++.+ ++..++.+|+ ++|++.+++.
T Consensus        91 -s~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~~-lGl~~~~i~~ll~~~P~lL~~s~e-~i~~~v~~L~~~lGfS~~ev~  167 (335)
T 4fp9_B           91 -NPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQK-LGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLFTVQQVT  167 (335)
T ss_dssp             -CHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHH-TTCTTTTHHHHHHHCGGGGTSCHH-HHHHHHHHHHHTSCCCHHHHH
T ss_pred             -CHHHHHHHHHhChhhccCCHHHHHHHHHHHHH-cCCCHHHHHHHHHhCchhhccChH-HHHHHHHHHHHHcCCCHHHHH
Confidence             78999999999999999999999999999988 699999999999999999999997 4888888886 6999999999


Q ss_pred             hHhhcCccccccChhhHHHHHHHHHHcCCCccchhHHHHHHHHhhcChhhHHHHHHHHHHcCCCHHHHHHHHHhCCcccc
Q 012091          314 KFLTKAPLFLALSFDNIAIKLGFLVKIGYECRTRELAAAMGSVTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQILQ  393 (471)
Q Consensus       314 ~ll~~~P~iL~~s~~~l~~~l~~L~~~G~~~~~~~~~~~~~~~~~~~~~~l~~ki~~L~~lG~s~~ev~~~v~~~P~iL~  393 (471)
                      +|+.++|++|.++.++++++++|+.+                                 ++|++.++|.    + |++|+
T Consensus       168 ~mv~r~P~lL~~S~e~L~~K~efLv~---------------------------------~Mgl~~~eIv----k-P~~l~  209 (335)
T 4fp9_B          168 KILHSCPSVLREDLGQLEYKFQYAYF---------------------------------RMGIKHPDIV----K-SEYLQ  209 (335)
T ss_dssp             HHHHHCGGGGTSCHHHHHHHHHHHHT---------------------------------TTCCCHHHHH----H-TTGGG
T ss_pred             HHHHhCChhhhCCHHHHHHHHHHHHH---------------------------------HhCCCHHHcc----c-cchhh
Confidence            99999999999997776666555542                                 6888888854    3 99999


Q ss_pred             cChhhHHHHHHHHHhhcCC
Q 012091          394 YNHKSLEEKMEYLIVGMGR  412 (471)
Q Consensus       394 ~s~~~l~~k~~fL~~~mg~  412 (471)
                      ||.+.|+++..||.. +|.
T Consensus       210 ySLeRIkpRH~fL~~-lG~  227 (335)
T 4fp9_B          210 YSLTKIKQRHIYLER-LGR  227 (335)
T ss_dssp             SCHHHHHHHHHHHHH-HTS
T ss_pred             ccHHHHHHHHHHHHH-cCC
Confidence            999999999999987 776

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=99.59  E-value=8.7e-15  Score=124.13  Aligned_cols=165  Identities=19%  Similarity=0.337  Sum_probs=146.0

Q ss_pred             hCCCHHHHHHHHHhCCcccccCcccchhhhHHHHHhcCCChHhHHhHhhcCccccccChhhHHHHHHHHHHcCCCccchh
Q 012091          269 AGLSDQEIFRIFLVFPAVISASRERKLRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECRTRE  348 (471)
Q Consensus       269 lGl~~~~i~~ii~~~P~lL~~sle~~l~pr~~~L~~~Gl~~~~i~~ll~~~P~iL~~s~~~l~~~l~~L~~~G~~~~~~~  348 (471)
                      +|++++-++-++.+.|+++...+- .++.|-.+|+.+|+.+..+.+++-.+|.|+++....+...+..+++         
T Consensus        43 lglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrqqdindtvrllke---------  112 (239)
T 4fzv_B           43 LGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLKE---------  112 (239)
T ss_dssp             HCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHHHHHHHHHHHHH---------
T ss_pred             hcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHHhhHhHHHHHHHH---------
Confidence            599999999999999999999985 4888999999999999999999999999999997666555544442         


Q ss_pred             HHHHHHHHhhcChhhHHHHHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHhhcCCChHHHhhcCceeeccc
Q 012091          349 LAAAMGSVTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREVGELLAFPAFLGYKL  428 (471)
Q Consensus       349 ~~~~~~~~~~~~~~~l~~ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~L~~Sl  428 (471)
                                              .+-|+..++.+++..||.++.-+...++.|+.|-.-.||+.+.+|++ ..||.||+
T Consensus       113 ------------------------kclftvqqvtkilhscpsvlredlgqleykfqyayfrmgikhpdivk-seylqysl  167 (239)
T 4fzv_B          113 ------------------------KCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSL  167 (239)
T ss_dssp             ------------------------HSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHHHH-TTGGGSCH
T ss_pred             ------------------------hHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcchhH-HHHHHHHH
Confidence                                    67899999999999999999999999999999999999999999998 47999999


Q ss_pred             ccchhhHHHHHHHHhc------CC------CCchhhhcccHHHHHHHHhhCCC
Q 012091          429 DDRIKHRYEAKRKTLG------DG------LSINKLLSVSVERFSTKIKKNPI  469 (471)
Q Consensus       429 e~rI~pR~~~L~~L~~------~g------~~l~~~l~~sd~~F~~~~~k~~~  469 (471)
                       .+|+.||-+++.|..      +|      +-+.+++..||.+|..+-++.|+
T Consensus       168 -tkikqrhiylerlgryqtpdkkgqtqipnpllkdilrvseaeflartactsv  219 (239)
T 4fzv_B          168 -TKIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSV  219 (239)
T ss_dssp             -HHHHHHHHHHHHHTCCCCCCSSSCCSSCCCCHHHHHTSCHHHHHHHTSCSCH
T ss_pred             -HHHHHHHhHHHHhcccCCCCccCCccCCChHHHHHHHHhHHHHHHHHhcccH
Confidence             599999999998854      23      24689999999999999988875

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=98.50  E-value=1.8e-06  Score=73.25  Aligned_cols=150  Identities=21%  Similarity=0.447  Sum_probs=122.5

Q ss_pred             cHHHHHHHHHhCCCCChHHHHHHHHhcCcccccchhcHHHHHHHhHHhhCCCHHHHHHHHHhCCcccccCcccchhhhHH
Q 012091          221 QLIPKVRVLSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRERKLRPRID  300 (471)
Q Consensus       221 ~l~~kv~~L~~~g~~~~~~l~~~v~k~P~iL~~s~e~l~~~~~fL~~~lGl~~~~i~~ii~~~P~lL~~sle~~l~pr~~  300 (471)
                      .+...+.-+.-+|. +++-+.-++.+.|.++....-.++.+..||++. |+.+..+.+++..+|.++++.-. .+...++
T Consensus        32 qlldiisefillgl-npepvcvvlkkspqllklpimqmrkrssylqkl-glgegklkrvlyccpeiftmrqq-dindtvr  108 (239)
T 4fzv_B           32 QLLDIISEFILLGL-NPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKL-GLGEGKLKRVLYCCPEIFTMRQQ-DINDTVR  108 (239)
T ss_dssp             TTTHHHHHHHHHCC-CTTHHHHHHHSCGGGGTSCHHHHHHHHHHHHHH-TTCSSCCHHHHHHCGGGGTSCHH-HHHHHHH
T ss_pred             HHHHHHHHHHhhcC-CCCceEEEecCCHHHhcChHHHHHHHHHHHHHh-CCCccchhhheecCcHHHHHHHh-hHhHHHH
Confidence            45556666666775 788899999999999999999999999999985 99999999999999999998764 4778899


Q ss_pred             HHHh-cCCChHhHHhHhhcCccccccChhhHHHHHHHHHHcCCCccchhHHHHHHHHhhcChhhHHHHHHHHHHcCCCHH
Q 012091          301 FLKQ-CGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECRTRELAAAMGSVTRTSCENLQKVIGLFLSYGLSFA  379 (471)
Q Consensus       301 ~L~~-~Gl~~~~i~~ll~~~P~iL~~s~~~l~~~l~~L~~~G~~~~~~~~~~~~~~~~~~~~~~l~~ki~~L~~lG~s~~  379 (471)
                      .|++ +=++.+++.+++..+|.++.-+...++.+++|.-                                 .++|+...
T Consensus       109 llkekclftvqqvtkilhscpsvlredlgqleykfqyay---------------------------------frmgikhp  155 (239)
T 4fzv_B          109 LLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAY---------------------------------FRMGIKHP  155 (239)
T ss_dssp             HHHHHSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHH---------------------------------HTSCCCHH
T ss_pred             HHHHhHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHH---------------------------------HHccCCCc
Confidence            9987 7789999999999999999998888777666643                                 24566665


Q ss_pred             HHHHHHHhCCcccccChhhHHHHHHHHHhhcCC
Q 012091          380 DIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGR  412 (471)
Q Consensus       380 ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~mg~  412 (471)
                      +|.+     ...+.||..+++.+.-||.. +|.
T Consensus       156 divk-----seylqysltkikqrhiyler-lgr  182 (239)
T 4fzv_B          156 DIVK-----SEYLQYSLTKIKQRHIYLER-LGR  182 (239)
T ss_dssp             HHHH-----TTGGGSCHHHHHHHHHHHHH-HTC
T ss_pred             chhH-----HHHHHHHHHHHHHHHhHHHH-hcc
Confidence            5332     34678888899999988876 664

>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}

Probab=91.86  E-value=0.35  Score=33.84  Aligned_cols=27  Identities=15%  Similarity=0.160  Sum_probs=23.9

Q ss_pred             hhHHHHHHHHHHcCCCHHHHHHHHHhC
Q 012091          362 ENLQKVIGLFLSYGLSFADIYIMSKKH  388 (471)
Q Consensus       362 ~~l~~ki~~L~~lG~s~~ev~~~v~~~  388 (471)
                      ..+.+|++||++=|++.+||...+.++
T Consensus        28 sp~~~K~~FL~sKGLt~~EI~~Al~rs   54 (54)
T 3ff5_A           28 SPLATRRAFLKKKGLTDEEIDLAFQQS   54 (54)
T ss_dssp             SCHHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence            458899999999999999999998764

>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A

Probab=87.11  E-value=0.94  Score=33.38  Aligned_cols=27  Identities=15%  Similarity=0.156  Sum_probs=24.2

Q ss_pred             hhHHHHHHHHHHcCCCHHHHHHHHHhC
Q 012091          362 ENLQKVIGLFLSYGLSFADIYIMSKKH  388 (471)
Q Consensus       362 ~~l~~ki~~L~~lG~s~~ev~~~v~~~  388 (471)
                      ..+.+|++||++=|++.+||...+.+.
T Consensus        33 sp~~~K~~FL~sKGLt~eEI~~Al~ra   59 (70)
T 2w84_A           33 SPLATRRAFLKKKGLTDEEIDMAFQQS   59 (70)
T ss_dssp             SCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence            458899999999999999999999885

>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}

Probab=84.98  E-value=0.93  Score=31.70  Aligned_cols=35  Identities=17%  Similarity=0.282  Sum_probs=28.1

Q ss_pred             HHhCCCCCCCCchhhHHHHHHHHhcCCCchhhhhhhhc
Q 012091           71 LEKNPTLRVTPLDKMRSRILSLQSVGIKGMAFCRLISK  108 (471)
Q Consensus        71 v~~~P~ll~~~~~~l~~~v~~L~~lGls~~~i~~ll~~  108 (471)
                      +..+|.+-.++   +..+++||++-|++..+|...+.+
T Consensus        19 FL~dp~V~~sp---~~~K~~FL~sKGLt~~EI~~Al~r   53 (54)
T 3ff5_A           19 FLQNSRVRQSP---LATRRAFLKKKGLTDEEIDLAFQQ   53 (54)
T ss_dssp             HHHCTTGGGSC---HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HhCChhhhcCC---HHHHHHHHHHcCCCHHHHHHHHHc
Confidence            46688887766   556999999999999999877653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00