Citrus Sinensis ID: 012095
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 471 | 2.2.26 [Sep-21-2011] | |||||||
| E9L7A5 | 479 | Bifunctional aspartate am | N/A | no | 0.940 | 0.924 | 0.829 | 0.0 | |
| Q9SIE1 | 475 | Bifunctional aspartate am | yes | no | 0.989 | 0.981 | 0.737 | 0.0 | |
| Q5F4K8 | 492 | Aspartate aminotransferas | N/A | no | 0.845 | 0.808 | 0.786 | 0.0 | |
| Q9ZE56 | 399 | Aspartate aminotransferas | yes | no | 0.825 | 0.974 | 0.435 | 5e-89 | |
| Q02635 | 400 | Aspartate aminotransferas | yes | no | 0.828 | 0.975 | 0.436 | 5e-89 | |
| Q68XV9 | 399 | Aspartate aminotransferas | yes | no | 0.838 | 0.989 | 0.428 | 2e-88 | |
| Q1RGV0 | 399 | Aspartate aminotransferas | yes | no | 0.838 | 0.989 | 0.438 | 5e-88 | |
| Q4UND3 | 409 | Aspartate aminotransferas | yes | no | 0.830 | 0.955 | 0.427 | 9e-88 | |
| Q55128 | 389 | Aspartate aminotransferas | N/A | no | 0.817 | 0.989 | 0.421 | 2e-86 | |
| Q92JE7 | 401 | Aspartate aminotransferas | yes | no | 0.832 | 0.977 | 0.424 | 9e-86 |
| >sp|E9L7A5|PAT_PETHY Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase OS=Petunia hybrida PE=1 SV=1 | Back alignment and function desciption |
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Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/451 (82%), Positives = 410/451 (90%), Gaps = 8/451 (1%)
Query: 28 PGSVSFPSRYLHNFNLNKS-------DRRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKT 80
P S+SF S LH F+L S RR V+ +++V+VD+SLSPRVN+VKPSKT
Sbjct: 30 PKSISFSSN-LHTFSLKSSGSRRQLYSRRTGAVVIMQSMDKVEVDISLSPRVNSVKPSKT 88
Query: 81 VAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSA 140
VAITDQATAL QAGV VIRLAAGEPDFDTP I EAGINAIREG TRYTPNAGT+ELRSA
Sbjct: 89 VAITDQATALVQAGVPVIRLAAGEPDFDTPAPIVEAGINAIREGHTRYTPNAGTMELRSA 148
Query: 141 ICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 200
I HKLKEENGLSYTPDQILVSNGAKQSI+QAVLAVCSPGDEV+IPAP+WVSYPEMAR+AD
Sbjct: 149 ISHKLKEENGLSYTPDQILVSNGAKQSIIQAVLAVCSPGDEVLIPAPYWVSYPEMARLAD 208
Query: 201 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 260
ATPVILPT ISE+FLLDPK+LESKLTEKSRLLILCSPSNPTGSVYP+ LL++IA IVA+H
Sbjct: 209 ATPVILPTSISEDFLLDPKLLESKLTEKSRLLILCSPSNPTGSVYPRKLLEQIAEIVARH 268
Query: 261 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 320
PRLLV+SDEIYEHIIYAPATHTSFASLPGMW+RTLTVNGFSKAFAMTGWRLGYIAGPKHF
Sbjct: 269 PRLLVISDEIYEHIIYAPATHTSFASLPGMWDRTLTVNGFSKAFAMTGWRLGYIAGPKHF 328
Query: 321 VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 380
+AACNKIQSQFTSGASSISQKA VAALGLGYAGGE+V+ MVK+FRERRD+LVKSFGE+EG
Sbjct: 329 IAACNKIQSQFTSGASSISQKAAVAALGLGYAGGELVATMVKSFRERRDYLVKSFGEIEG 388
Query: 381 VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 440
VK+SEP+GAFYLFID S+YYG E +GFG I NSESLCRYLLDKAQVALVPGDAFGDDTCI
Sbjct: 389 VKISEPRGAFYLFIDLSSYYGVEVDGFGSINNSESLCRYLLDKAQVALVPGDAFGDDTCI 448
Query: 441 RISYAASLTTLQAAVERIKKGLLTLRPGVPV 471
RISYAASL+TLQAAVERIKK L+T++P VPV
Sbjct: 449 RISYAASLSTLQAAVERIKKALVTIKPPVPV 479
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Prokaryotic-type aspartate aminotransferase. Has also a prenate transaminase activity. Involved in the aromatic amino acids biosynthesis pathway via the arogenate route. Required for the transamination of prephenate into arogenate. Can use 2-oxoglutarate, oxaloacetate and prephenate as substrates, but not phenylpyruvate or 4-hydroxyphenylpyruvate. Petunia hybrida (taxid: 4102) EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 7EC: 9 |
| >sp|Q9SIE1|PAT_ARATH Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase OS=Arabidopsis thaliana GN=PAT PE=1 SV=2 | Back alignment and function description |
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Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/472 (73%), Positives = 392/472 (83%), Gaps = 6/472 (1%)
Query: 6 HSSTSFISNPVNFGHSKIPAQIP-GSVSFPSRYLHNFNLNKSDRRVLRVMACSGVEEVQ- 63
SS + IS+ G S ++ P GSV F +F+ KS R+ A + + +
Sbjct: 4 QSSVAVISSAAARGESFPDSKKPIGSVRFQQPLRLSFSYCKSGNMSSRICAMAKPNDAET 63
Query: 64 ----VDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGIN 119
VD+SLSPRV ++KPSKT+ ITD A L Q+GV VIRLAAGEPDFDTP ++AEAGIN
Sbjct: 64 LSSSVDMSLSPRVQSLKPSKTMVITDLAATLVQSGVPVIRLAAGEPDFDTPKVVAEAGIN 123
Query: 120 AIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPG 179
AIREGFTRYT NAG ELR AIC KLKEENGLSY PDQILVSNGAKQS+LQAVLAVCSPG
Sbjct: 124 AIREGFTRYTLNAGITELREAICRKLKEENGLSYAPDQILVSNGAKQSLLQAVLAVCSPG 183
Query: 180 DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSN 239
DEVIIPAP+WVSY E AR+ADATPV++PT+IS NFLLDPK LESKLTEKSRLLILCSPSN
Sbjct: 184 DEVIIPAPYWVSYTEQARLADATPVVIPTKISNNFLLDPKDLESKLTEKSRLLILCSPSN 243
Query: 240 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 299
PTGSVYPK+LL+EIARI+AKHPRLLVLSDEIYEHIIYAPATHTSFASLP M+ERTLTVNG
Sbjct: 244 PTGSVYPKSLLEEIARIIAKHPRLLVLSDEIYEHIIYAPATHTSFASLPDMYERTLTVNG 303
Query: 300 FSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 359
FSKAFAMTGWRLGY+AGPKH VAAC+K+Q Q +SGASSI+QKAGVAALGLG AGGE V++
Sbjct: 304 FSKAFAMTGWRLGYLAGPKHIVAACSKLQGQVSSGASSIAQKAGVAALGLGKAGGETVAE 363
Query: 360 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRY 419
MVKA+RERRDFLVKS G+++GVK+SEPQGAFYLFIDFS YYGSEAEGFG I +S SL Y
Sbjct: 364 MVKAYRERRDFLVKSLGDIKGVKISEPQGAFYLFIDFSAYYGSEAEGFGLINDSSSLALY 423
Query: 420 LLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRPGVPV 471
LDK QVA+VPGDAFGDD+CIRISYA SL LQAAVE+I+K L LR V V
Sbjct: 424 FLDKFQVAMVPGDAFGDDSCIRISYATSLDVLQAAVEKIRKALEPLRATVSV 475
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Prokaryotic-type aspartate aminotransferase. Has also a prenate transaminase activity. Involved in the aromatic amino acids biosynthesis pathway via the arogenate route. Required for the transamination of prephenate into arogenate. Required for early development of the embryo. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|Q5F4K8|PAT_PINPS Aspartate aminotransferase OS=Pinus pinaster GN=AAT PE=1 SV=1 | Back alignment and function description |
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Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/399 (78%), Positives = 354/399 (88%), Gaps = 1/399 (0%)
Query: 63 QVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIR 122
Q+D+SLSPRV A+KPSKT+AITD ATAL QAGV VI LAAGEPDF+TP +AEAGI AI+
Sbjct: 79 QLDISLSPRVAALKPSKTMAITDLATALKQAGVPVIGLAAGEPDFNTPDAVAEAGIKAIQ 138
Query: 123 EGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA-VLAVCSPGDE 181
+G+TRYTPNAGT+E+R+AICHKLKEENGLSYTPDQILVSNGAKQ I+ A VLAVCSPGDE
Sbjct: 139 DGYTRYTPNAGTMEIRTAICHKLKEENGLSYTPDQILVSNGAKQCIMAAAVLAVCSPGDE 198
Query: 182 VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT 241
VIIPAPFWVSY EMAR+ADATPVI+PT +S++FLL+P+V SKL E SRLLILCSPSNPT
Sbjct: 199 VIIPAPFWVSYTEMARLADATPVIIPTLLSDDFLLNPEVFSSKLNENSRLLILCSPSNPT 258
Query: 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 301
GSVYP+ LL+EIA+IVAKHP+LLVLSDEIYEHI+Y PA HTSFASLPGMWERTLTVNGFS
Sbjct: 259 GSVYPRELLEEIAKIVAKHPKLLVLSDEIYEHIMYPPAKHTSFASLPGMWERTLTVNGFS 318
Query: 302 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 361
KAFAMTGWRLGY+AGPKHFV AC +IQSQ TSGASSISQKAGVAAL LGYAG E VS MV
Sbjct: 319 KAFAMTGWRLGYLAGPKHFVTACGRIQSQSTSGASSISQKAGVAALALGYAGSEAVSTMV 378
Query: 362 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL 421
KA+RERRDFLV+ +EGVK+ PQGAFYLF DFS+YYG+E E FG I SE+LCR+ L
Sbjct: 379 KAYRERRDFLVQRLQAMEGVKLPVPQGAFYLFPDFSSYYGTEVEDFGVINGSEALCRFFL 438
Query: 422 DKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 460
+KAQVALVPGDAFG+D CIRISYAASL TL+ A+ I+K
Sbjct: 439 EKAQVALVPGDAFGNDDCIRISYAASLDTLRTAINNIEK 477
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Prokaryotic-type aspartate aminotransferase. Specific for aspartate and no activity with glutamine, asparagine, alanine, histidine, leucine, methionine, lysine, arginine, tryptophan, tyrosine, phenylalanine or kynureine. Pinus pinaster (taxid: 71647) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q9ZE56|AAT_RICPR Aspartate aminotransferase OS=Rickettsia prowazekii (strain Madrid E) GN=aatA PE=3 SV=2 | Back alignment and function description |
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Score = 328 bits (841), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 171/393 (43%), Positives = 242/393 (61%), Gaps = 4/393 (1%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
+S R+N++KPS T+A+ + L +AGV++I L AGEPDFDTP I E I +I++GFT+
Sbjct: 4 ISTRLNSIKPSPTLAVVKKTLELKKAGVNIIALGAGEPDFDTPDNIKEVAITSIKDGFTK 63
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YT G L+ AI +K K EN + Y D+I+VS G KQ I +A GDEVIIP P
Sbjct: 64 YTNVDGIPLLKQAIKNKFKRENNIDYELDEIIVSTGGKQVIYNLFMASLDKGDEVIIPVP 123
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+WVSYP+M ++ TPV + I NF L + LE +T+K++ LI+ SPSNPTG+ Y
Sbjct: 124 YWVSYPDMVALSTGTPVFVNCGIENNFKLSVEALEHSITDKTKWLIINSPSNPTGAGYNC 183
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 306
L+ IA+ + K+P + ++SD+IYEHI + + A + P + ER TVNG SKA++M
Sbjct: 184 KELENIAKTLRKYPNVNIMSDDIYEHITFDDFKFYTLAQIAPDLKERIFTVNGVSKAYSM 243
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
TGWR+GY AG K + A IQSQ TS SISQ A + AL + + F++
Sbjct: 244 TGWRIGYGAGSKALIKAMTIIQSQSTSNPCSISQMAAIEALN---GTQDYIKSNALNFQK 300
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
+RD + E+ + +P+GAFYLF+ +G++ + I NS + YLL++A+V
Sbjct: 301 KRDLALSILEEVTYFECYKPEGAFYLFVKCDKIFGTKTKSGRIIANSNNFSEYLLEEAKV 360
Query: 427 ALVPGDAFGDDTCIRISYAASLTTLQAAVERIK 459
A+VPG AFG D RISYA S+ L+ A RIK
Sbjct: 361 AVVPGIAFGLDGYFRISYATSMQELEEACIRIK 393
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Rickettsia prowazekii (strain Madrid E) (taxid: 272947) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q02635|AATA_RHIME Aspartate aminotransferase A OS=Rhizobium meliloti (strain 1021) GN=aatA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 328 bits (841), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 172/394 (43%), Positives = 236/394 (59%), Gaps = 4/394 (1%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
L+ ++ VKPS T+A++ +A L G VI L AGEPDFDTP I +A I+AI G T+
Sbjct: 4 LADALSRVKPSATIAVSQKARELKAKGRDVIGLGAGEPDFDTPDNIKKAAIDAIDRGETK 63
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YTP +G ELR AI K K EN L YT Q +V G KQ + A +A +PGDEV+IPAP
Sbjct: 64 YTPVSGIPELREAIAKKFKRENNLDYTAAQTIVGTGGKQILFNAFMATLNPGDEVVIPAP 123
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+WVSYPEM + TPV +PTR NF L + L+ +T K++ + SPSNP+G+ Y
Sbjct: 124 YWVSYPEMVALCGGTPVFVPTRQENNFKLKAEDLDRAITPKTKWFVFNSPSNPSGAAYSH 183
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 306
L + ++ KHP + VL+D++YEH+ Y + + PG++ERTLT+NG SKA+AM
Sbjct: 184 EELKALTDVLMKHPHVWVLTDDMYEHLTYGDFRFATPVEVEPGLYERTLTMNGVSKAYAM 243
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
TGWR+GY AGP H + A + IQ Q TSGA+SI+Q A V AL + + + + F+
Sbjct: 244 TGWRIGYAAGPLHLIKAMDMIQGQQTSGAASIAQWAAVEALN---GPQDFIGRNKEIFQG 300
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
RRD +V + +G+ P+GAFY++ + G A IE E LL+ V
Sbjct: 301 RRDLVVSMLNQAKGISCPTPEGAFYVYPSCAGLIGKTAPSGKVIETDEDFVSELLETEGV 360
Query: 427 ALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 460
A+V G AFG RISYA S L+ A RI++
Sbjct: 361 AVVHGSAFGLGPNFRISYATSEALLEEACRRIQR 394
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Required for symbiotic nitrogen fixation. Rhizobium meliloti (strain 1021) (taxid: 266834) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q68XV9|AAT_RICTY Aspartate aminotransferase OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=aatA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 326 bits (836), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 171/399 (42%), Positives = 244/399 (61%), Gaps = 4/399 (1%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
+S R+N++KPS T+A+ + L +AGV++I L AGEPDFDTP I E I +I++GFT+
Sbjct: 4 ISTRLNSIKPSPTLAVVKKTLELKKAGVNIIALGAGEPDFDTPDNIKEVAITSIKDGFTK 63
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YT G L+ AI +K K EN + Y D+I+VS G KQ I +A GDEVIIP P
Sbjct: 64 YTNVDGIPLLKQAIKNKFKRENNIDYELDEIIVSTGGKQVIYNLFMASLDKGDEVIIPVP 123
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+WVSYP+M ++ TP+ + I NF L + LE +T+K++ LI+ SPSNPTG+ Y
Sbjct: 124 YWVSYPDMVALSTGTPIFVNCGIENNFKLTVEALERSITDKTKWLIINSPSNPTGAGYNC 183
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 306
L+ IA+ + K+P + ++SD+IYEHI + + A + P + ER TVNG SKA++M
Sbjct: 184 KELENIAKTLRKYPNVNIMSDDIYEHITFDDFKFYTLAQIAPDLKERIFTVNGVSKAYSM 243
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
TGWR+GY AG K + A IQSQ TS SISQ A + AL + + F++
Sbjct: 244 TGWRIGYGAGSKALIKAMTVIQSQSTSNPCSISQMAAIEALN---GTQDYIKPNALNFQK 300
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
+RD + ++ + +P+GAFYLF+ +G++ + I NS YLL++A+V
Sbjct: 301 KRDLALSILEKVIYFECYKPEGAFYLFVKCDKIFGTKTKSGKIIANSNHFSEYLLEEAKV 360
Query: 427 ALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTL 465
A+VPG AFG D RISYA S+ L+ A RIK+ TL
Sbjct: 361 AVVPGVAFGLDGYFRISYATSMQELKEACIRIKQACNTL 399
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Rickettsia typhi (strain ATCC VR-144 / Wilmington) (taxid: 257363) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q1RGV0|AAT_RICBR Aspartate aminotransferase OS=Rickettsia bellii (strain RML369-C) GN=aatA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 325 bits (832), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 175/399 (43%), Positives = 246/399 (61%), Gaps = 4/399 (1%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
+S ++NA+KPS T+A+ + L +AG+ +I L AGEPDFDTP I EA I AI++GFT+
Sbjct: 4 ISTQLNAIKPSPTLAVVRKTLELKRAGIDIIALGAGEPDFDTPDNIKEAAIKAIKDGFTK 63
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YT G L+ AI K K EN + Y ++I+VS G KQ I +A + GDEVIIPAP
Sbjct: 64 YTNVEGIPALKEAIQAKFKRENNIDYDLEEIIVSTGGKQVIYNLFMASLNKGDEVIIPAP 123
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+WVSYP+M +A+ TPV I NF L + LE +T K++ LI+ SPSNPTG+ Y
Sbjct: 124 YWVSYPDMVLLAEGTPVFANCGIESNFKLSGEALEQLITPKTKWLIINSPSNPTGASYSH 183
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 306
+ L IA ++ KHP + V+SD+IYEHI + + A + P + +R TVNG SKA++M
Sbjct: 184 SELKNIAEVLRKHPYVNVMSDDIYEHITFDGFKFYTLAEIAPDLKDRIFTVNGVSKAYSM 243
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
TGWR+GY AG K + A IQSQ TS SISQ A V AL G G +++ F +
Sbjct: 244 TGWRIGYGAGSKALIKAMTIIQSQSTSNPCSISQVAAVEALN-GVQG--YIAQNALNFEK 300
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
+RD + ++ + +P+GAFYLFI +G++ + I NS YLL++A+V
Sbjct: 301 KRDLALSILQRVKYFECYKPEGAFYLFIKCDKIFGAKTKSGKVINNSNDFGEYLLEEAKV 360
Query: 427 ALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTL 465
A+VPG AFG + RISYA S+ L+ A R+++ +L
Sbjct: 361 AVVPGIAFGLEGYFRISYATSMEELEEACLRMERACGSL 399
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Rickettsia bellii (strain RML369-C) (taxid: 336407) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q4UND3|AAT_RICFE Aspartate aminotransferase OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=aatA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 324 bits (830), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 169/395 (42%), Positives = 241/395 (61%), Gaps = 4/395 (1%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
+S R+N++KPS T+A+ + L +AGV +I L AGEPDFDTP I EA I AI++GFT+
Sbjct: 4 ISTRLNSIKPSPTLAVVKKTLELKKAGVDIIALGAGEPDFDTPDNIKEAAIKAIKDGFTK 63
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YT G L+ AI K K EN + Y D+I+VS G KQ I +A GD+VIIPAP
Sbjct: 64 YTNVEGMPLLKQAIKDKFKRENNIDYELDEIIVSTGGKQVIYNLFMASLDKGDKVIIPAP 123
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+WVSYP+M ++ TPV + I NF L + LE +T+K++ LI+ SPSNPTG+ Y
Sbjct: 124 YWVSYPDMVALSTGTPVFVNCGIENNFKLSAEALERSITDKTKWLIINSPSNPTGASYNF 183
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 306
L+ IA+++ K+P + V+SD+IYEHI + + A + P + ER TVNG SKA++M
Sbjct: 184 EELENIAKVLRKYPHVNVMSDDIYEHITFDDFKFYTLAQIAPDLKERIFTVNGVSKAYSM 243
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
TGWR+GY G K + A IQSQ TS SISQ A + +L + + F++
Sbjct: 244 TGWRIGYGVGSKALIKAMTIIQSQSTSNPCSISQMAAIESLN---GPQDYIKPNALNFQK 300
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
+RD + ++ + +P+GAFYLF+ +G + + I NS YLL++A+V
Sbjct: 301 KRDLALSILKRVKYFECYKPEGAFYLFVKCDKIFGHKTKSGKIIANSNDFAEYLLEEAKV 360
Query: 427 ALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKG 461
A+VPG AFG + RISYA S+ L+ A RI++
Sbjct: 361 AVVPGIAFGLEGYFRISYATSMEELEEACIRIERA 395
|
Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q55128|AAT_SYNY3 Aspartate aminotransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=aspC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 319 bits (818), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 168/399 (42%), Positives = 243/399 (60%), Gaps = 14/399 (3%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
L+ RV+ V PS T+ IT +A A+ G+ V+ AGEPDF TP I EA A+ EG TR
Sbjct: 3 LTQRVSQVVPSITLEITAKAKAMRTEGIDVLSFTAGEPDFTTPPHIVEAAKLALDEGKTR 62
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
Y P AG LR AI KL+E+N L Y ILV+NG K S+ +LA+ GDEVIIPAP
Sbjct: 63 YGPAAGEPALRQAIAKKLREKNNLPYEAANILVTNGGKHSLFNLMLAMIEQGDEVIIPAP 122
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+W+SYPEM R+A+ TPVI+ T + ++ + P+ L +T KS+L +L SPSNPTG+VY
Sbjct: 123 YWLSYPEMVRLAEGTPVIVNTTAATDYKITPEQLRQAITSKSKLFVLNSPSNPTGAVYTP 182
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG-MWERTLTVNGFSKAFAM 306
+ +A ++ ++ L V+SDEIYE I+Y H S ++ +++RT+ NGF+K+++M
Sbjct: 183 AEIRALAAVILEYEDLYVVSDEIYERILYDGTEHLSIGAVNDEIFQRTIISNGFAKSYSM 242
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
TGWR+GY+AG + AC+ IQ TS + +Q +AAL V MVKAF E
Sbjct: 243 TGWRVGYLAGELPLIQACSTIQGHSTSNVCTFAQYGAIAALE---NPQTCVETMVKAFTE 299
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
RR +V+ ++ G+ P+GAFY+F+D + G +E S LL+ QV
Sbjct: 300 RRQVIVEGINQIAGLSCPNPKGAFYVFVDIAK------TGLNSLEFSAR----LLESHQV 349
Query: 427 ALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTL 465
A++PG AFG D C+R SYA + T++ + +++ + TL
Sbjct: 350 AVIPGAAFGADDCVRFSYATDMDTIKQGLAELERFVSTL 388
|
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q92JE7|AAT_RICCN Aspartate aminotransferase OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=aatA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 317 bits (813), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 168/396 (42%), Positives = 240/396 (60%), Gaps = 4/396 (1%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
+S R++++KPS T+A+ + L +AGV +I L AGEPDFDTP I E I AI++GFT+
Sbjct: 4 ISTRLSSIKPSPTLAVVKKTLELKKAGVDIITLGAGEPDFDTPDNIKEGAIKAIKDGFTK 63
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YT G L+ AI K K EN + Y D+I+VS G KQ I +A GDEVIIPAP
Sbjct: 64 YTNVEGMPLLKQAIKDKFKRENNIDYELDEIIVSTGGKQVIYNLFMASLDQGDEVIIPAP 123
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+WVSYP+M ++ TPV + I NF L + LE +T+K++ LI+ SPSNPTG+ Y
Sbjct: 124 YWVSYPDMVALSTGTPVFVNCGIENNFKLSAEALERSITDKTKWLIINSPSNPTGASYNF 183
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 306
L+ IA+++ K+ + V+SD+IYEHI + + A + P + +R TVNG SKA++M
Sbjct: 184 EELENIAKVLRKYSHVNVMSDDIYEHITFDDFKFYTLAQIAPDLKKRIFTVNGVSKAYSM 243
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
TGWR+GY AG K + A IQSQ TS SISQ A + AL + + ++
Sbjct: 244 TGWRIGYGAGSKTLIKAMTIIQSQSTSNPCSISQMAAIEALN---GPQDYIKPNALNCQK 300
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
+RD + ++ + +P+GAFYLF+ +G + + I NS YLL++A+V
Sbjct: 301 KRDLALSILKRVKYFECYKPEGAFYLFVKCDKIFGHKTKSGTIIANSNDFAEYLLEEAKV 360
Query: 427 ALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGL 462
A+VPG AFG + RISYA S+ L+ A RI+K +
Sbjct: 361 AVVPGIAFGLEGYFRISYATSMEELEKACIRIEKTI 396
|
Rickettsia conorii (strain ATCC VR-613 / Malish 7) (taxid: 272944) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 471 | ||||||
| 296082448 | 476 | unnamed protein product [Vitis vinifera] | 0.963 | 0.953 | 0.829 | 0.0 | |
| 395406797 | 479 | RecName: Full=Bifunctional aspartate ami | 0.940 | 0.924 | 0.829 | 0.0 | |
| 350540010 | 480 | prephenate aminotransferase [Solanum lyc | 0.940 | 0.922 | 0.827 | 0.0 | |
| 224096225 | 410 | predicted protein [Populus trichocarpa] | 0.870 | 1.0 | 0.897 | 0.0 | |
| 225438653 | 410 | PREDICTED: bifunctional aspartate aminot | 0.847 | 0.973 | 0.909 | 0.0 | |
| 224083747 | 410 | predicted protein [Populus trichocarpa] | 0.870 | 1.0 | 0.890 | 0.0 | |
| 449469136 | 475 | PREDICTED: bifunctional aspartate aminot | 0.940 | 0.932 | 0.831 | 0.0 | |
| 255576156 | 484 | aspartate aminotransferase, putative [Ri | 0.991 | 0.964 | 0.752 | 0.0 | |
| 356525505 | 464 | PREDICTED: bifunctional aspartate aminot | 0.859 | 0.872 | 0.876 | 0.0 | |
| 388500244 | 475 | unknown [Medicago truncatula] | 0.978 | 0.970 | 0.780 | 0.0 |
| >gi|296082448|emb|CBI21453.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/463 (82%), Positives = 416/463 (89%), Gaps = 9/463 (1%)
Query: 7 SSTSFISNPVN--FGHSKIPAQIPGSVSFPSRYLHNFNLNKSDRRV----LRVMACSG-- 58
S T+F P F I ++ SVSFPSR+ H+ +S R+V L V+ +G
Sbjct: 5 SFTTFTPKPTRLCFADQSIGSECFRSVSFPSRF-HSLKSLESTRQVQSSRLDVIVRAGGT 63
Query: 59 VEEVQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGI 118
E+++VD+SLSPRVN+VKPSKTVAITDQATAL QAGV VIRLAAGEPDFDTP +IAEAGI
Sbjct: 64 SEKMEVDISLSPRVNSVKPSKTVAITDQATALVQAGVPVIRLAAGEPDFDTPAVIAEAGI 123
Query: 119 NAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSP 178
NAIREG+TRYTPNAGTLE+RSAICHKLKEENGLSYTPD+ILVSNGAKQSILQAVLAVCSP
Sbjct: 124 NAIREGYTRYTPNAGTLEVRSAICHKLKEENGLSYTPDEILVSNGAKQSILQAVLAVCSP 183
Query: 179 GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 238
GDEVIIPAPFWVSYPEMAR+ADATPVILPT ISENFLLDPK LESKLTEKSRLLILCSPS
Sbjct: 184 GDEVIIPAPFWVSYPEMARLADATPVILPTLISENFLLDPKFLESKLTEKSRLLILCSPS 243
Query: 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVN 298
NPTGSVY + LL+EIA+IVA+HPRLLVLSDEIYEHIIYAPATHTSFA+LPGMWERTLTVN
Sbjct: 244 NPTGSVYSRKLLEEIAQIVARHPRLLVLSDEIYEHIIYAPATHTSFAALPGMWERTLTVN 303
Query: 299 GFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 358
GFSKAFAMTGWRLGY+AGPKHFVAAC KIQSQFTSGASSISQKA VAALG+GYAGGE VS
Sbjct: 304 GFSKAFAMTGWRLGYLAGPKHFVAACGKIQSQFTSGASSISQKAAVAALGMGYAGGEAVS 363
Query: 359 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCR 418
MVKAFRERRDFLVKSFGELEGVK+SEPQGAFYLF+DFS+YYG+EAEGFG IENSESLCR
Sbjct: 364 TMVKAFRERRDFLVKSFGELEGVKISEPQGAFYLFLDFSSYYGAEAEGFGIIENSESLCR 423
Query: 419 YLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKG 461
YLLD+AQVALVPGDAFGDD CIRISYAASL+TL AAVERIKK
Sbjct: 424 YLLDQAQVALVPGDAFGDDKCIRISYAASLSTLHAAVERIKKA 466
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|395406797|sp|E9L7A5.1|PAT_PETHY RecName: Full=Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase; Short=PhPPA-AT; Flags: Precursor gi|305855253|gb|ADM67557.1| prephenate aminotransferase [Petunia x hybrida] | Back alignment and taxonomy information |
|---|
Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/451 (82%), Positives = 410/451 (90%), Gaps = 8/451 (1%)
Query: 28 PGSVSFPSRYLHNFNLNKS-------DRRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKT 80
P S+SF S LH F+L S RR V+ +++V+VD+SLSPRVN+VKPSKT
Sbjct: 30 PKSISFSSN-LHTFSLKSSGSRRQLYSRRTGAVVIMQSMDKVEVDISLSPRVNSVKPSKT 88
Query: 81 VAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSA 140
VAITDQATAL QAGV VIRLAAGEPDFDTP I EAGINAIREG TRYTPNAGT+ELRSA
Sbjct: 89 VAITDQATALVQAGVPVIRLAAGEPDFDTPAPIVEAGINAIREGHTRYTPNAGTMELRSA 148
Query: 141 ICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 200
I HKLKEENGLSYTPDQILVSNGAKQSI+QAVLAVCSPGDEV+IPAP+WVSYPEMAR+AD
Sbjct: 149 ISHKLKEENGLSYTPDQILVSNGAKQSIIQAVLAVCSPGDEVLIPAPYWVSYPEMARLAD 208
Query: 201 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 260
ATPVILPT ISE+FLLDPK+LESKLTEKSRLLILCSPSNPTGSVYP+ LL++IA IVA+H
Sbjct: 209 ATPVILPTSISEDFLLDPKLLESKLTEKSRLLILCSPSNPTGSVYPRKLLEQIAEIVARH 268
Query: 261 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 320
PRLLV+SDEIYEHIIYAPATHTSFASLPGMW+RTLTVNGFSKAFAMTGWRLGYIAGPKHF
Sbjct: 269 PRLLVISDEIYEHIIYAPATHTSFASLPGMWDRTLTVNGFSKAFAMTGWRLGYIAGPKHF 328
Query: 321 VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 380
+AACNKIQSQFTSGASSISQKA VAALGLGYAGGE+V+ MVK+FRERRD+LVKSFGE+EG
Sbjct: 329 IAACNKIQSQFTSGASSISQKAAVAALGLGYAGGELVATMVKSFRERRDYLVKSFGEIEG 388
Query: 381 VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 440
VK+SEP+GAFYLFID S+YYG E +GFG I NSESLCRYLLDKAQVALVPGDAFGDDTCI
Sbjct: 389 VKISEPRGAFYLFIDLSSYYGVEVDGFGSINNSESLCRYLLDKAQVALVPGDAFGDDTCI 448
Query: 441 RISYAASLTTLQAAVERIKKGLLTLRPGVPV 471
RISYAASL+TLQAAVERIKK L+T++P VPV
Sbjct: 449 RISYAASLSTLQAAVERIKKALVTIKPPVPV 479
|
Source: Petunia x hybrida Species: Petunia x hybrida Genus: Petunia Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350540010|ref|NP_001234609.1| prephenate aminotransferase [Solanum lycopersicum] gi|311700557|gb|ADQ00383.1| prephenate aminotransferase [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/451 (82%), Positives = 406/451 (90%), Gaps = 8/451 (1%)
Query: 28 PGSVSFPSRYLHNFNLNKS-------DRRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKT 80
P S+SF S L +L S R V+ ++ V+VD+SLSPRVN+VKPSKT
Sbjct: 31 PTSISFSSN-LQGLSLRSSGAKRQLYSRGTGSVVIAQNMDRVEVDLSLSPRVNSVKPSKT 89
Query: 81 VAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSA 140
VAITDQATAL QAGV VIRLAAGEPDFDTP IAEAGINAIREG TRYTPNAGT+ELRSA
Sbjct: 90 VAITDQATALVQAGVPVIRLAAGEPDFDTPAPIAEAGINAIREGHTRYTPNAGTMELRSA 149
Query: 141 ICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 200
ICHKLKEENGLSYTPDQI+VSNGAKQSI+QAVLAVCSPGDEV+IPAP+WVSYPEMAR+AD
Sbjct: 150 ICHKLKEENGLSYTPDQIVVSNGAKQSIVQAVLAVCSPGDEVLIPAPYWVSYPEMARMAD 209
Query: 201 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 260
A PVILPT ISE+FLLDPK+LESKLTEKSRLLILCSPSNPTGSVYP+ LL+EIA IVA+H
Sbjct: 210 AMPVILPTSISEDFLLDPKLLESKLTEKSRLLILCSPSNPTGSVYPRKLLEEIAEIVARH 269
Query: 261 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 320
PRLLV+SDEIYEHIIYAPATHTSFASLPGMW+RTLTVNGFSKAFAMTGWRLGYIAGPKHF
Sbjct: 270 PRLLVISDEIYEHIIYAPATHTSFASLPGMWDRTLTVNGFSKAFAMTGWRLGYIAGPKHF 329
Query: 321 VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 380
V+ACNK+QSQFTSGASSISQKA VAALGLGYAGGE V+ MVKAFRERRDFLVKSFGE++G
Sbjct: 330 VSACNKLQSQFTSGASSISQKAAVAALGLGYAGGEAVATMVKAFRERRDFLVKSFGEIDG 389
Query: 381 VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 440
VK+SEP+GAFYLFID S+YYG E +GFG I NSESLCRYLLDK+QVALVPGDAFGDDTCI
Sbjct: 390 VKISEPRGAFYLFIDLSSYYGVEVDGFGTINNSESLCRYLLDKSQVALVPGDAFGDDTCI 449
Query: 441 RISYAASLTTLQAAVERIKKGLLTLRPGVPV 471
RISYAASL+TLQAAVERIKK L+TLRP VPV
Sbjct: 450 RISYAASLSTLQAAVERIKKALVTLRPPVPV 480
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224096225|ref|XP_002310582.1| predicted protein [Populus trichocarpa] gi|222853485|gb|EEE91032.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/410 (89%), Positives = 389/410 (94%)
Query: 62 VQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAI 121
+Q+D+SLSPRVNAVKPSKTVAITDQATAL QAGV VIRLAAGEPDFDTPV+IAEAGINAI
Sbjct: 1 MQLDISLSPRVNAVKPSKTVAITDQATALVQAGVPVIRLAAGEPDFDTPVVIAEAGINAI 60
Query: 122 REGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDE 181
REGFTRYTPNAGT ELR AICHKLKEENG+SYTPDQILVSNGAKQSI QA+LAVCSPGDE
Sbjct: 61 REGFTRYTPNAGTQELRVAICHKLKEENGISYTPDQILVSNGAKQSIYQAMLAVCSPGDE 120
Query: 182 VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT 241
VIIPAPFWVSYPEMAR+ADATPVILPT ISENFLLDPK+LESKL+ KSRLLILCSPSNPT
Sbjct: 121 VIIPAPFWVSYPEMARLADATPVILPTSISENFLLDPKLLESKLSAKSRLLILCSPSNPT 180
Query: 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 301
GSVY K LL+EIARIVAKHPRLLVLSDEIYEHIIYAPATH SFASLPGMWERTLTVNGFS
Sbjct: 181 GSVYSKKLLEEIARIVAKHPRLLVLSDEIYEHIIYAPATHISFASLPGMWERTLTVNGFS 240
Query: 302 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 361
KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE VS MV
Sbjct: 241 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEAVSTMV 300
Query: 362 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL 421
KAF ERRDFL++SFGE+EGV+MSEPQGAFYLFID S+YYG+EAEGFGKIE+S+SLCRYLL
Sbjct: 301 KAFMERRDFLIRSFGEMEGVRMSEPQGAFYLFIDTSSYYGTEAEGFGKIEDSDSLCRYLL 360
Query: 422 DKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRPGVPV 471
D+AQVALVPG AFGDD+CIRISYAASLTTLQ AV RIKK LL L+ VPV
Sbjct: 361 DQAQVALVPGVAFGDDSCIRISYAASLTTLQEAVGRIKKALLPLKSAVPV 410
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225438653|ref|XP_002277000.1| PREDICTED: bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/399 (90%), Positives = 385/399 (96%)
Query: 62 VQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAI 121
++VD+SLSPRVN+VKPSKTVAITDQATAL QAGV VIRLAAGEPDFDTP +IAEAGINAI
Sbjct: 1 MEVDISLSPRVNSVKPSKTVAITDQATALVQAGVPVIRLAAGEPDFDTPAVIAEAGINAI 60
Query: 122 REGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDE 181
REG+TRYTPNAGTLE+RSAICHKLKEENGLSYTPD+ILVSNGAKQSILQAVLAVCSPGDE
Sbjct: 61 REGYTRYTPNAGTLEVRSAICHKLKEENGLSYTPDEILVSNGAKQSILQAVLAVCSPGDE 120
Query: 182 VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT 241
VIIPAPFWVSYPEMAR+ADATPVILPT ISENFLLDPK LESKLTEKSRLLILCSPSNPT
Sbjct: 121 VIIPAPFWVSYPEMARLADATPVILPTLISENFLLDPKFLESKLTEKSRLLILCSPSNPT 180
Query: 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 301
GSVY + LL+EIA+IVA+HPRLLVLSDEIYEHIIYAPATHTSFA+LPGMWERTLTVNGFS
Sbjct: 181 GSVYSRKLLEEIAQIVARHPRLLVLSDEIYEHIIYAPATHTSFAALPGMWERTLTVNGFS 240
Query: 302 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 361
KAFAMTGWRLGY+AGPKHFVAAC KIQSQFTSGASSISQKA VAALG+GYAGGE VS MV
Sbjct: 241 KAFAMTGWRLGYLAGPKHFVAACGKIQSQFTSGASSISQKAAVAALGMGYAGGEAVSTMV 300
Query: 362 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL 421
KAFRERRDFLVKSFGELEGVK+SEPQGAFYLF+DFS+YYG+EAEGFG IENSESLCRYLL
Sbjct: 301 KAFRERRDFLVKSFGELEGVKISEPQGAFYLFLDFSSYYGAEAEGFGIIENSESLCRYLL 360
Query: 422 DKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 460
D+AQVALVPGDAFGDD CIRISYAASL+TL AAVERIKK
Sbjct: 361 DQAQVALVPGDAFGDDKCIRISYAASLSTLHAAVERIKK 399
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224083747|ref|XP_002307109.1| predicted protein [Populus trichocarpa] gi|222856558|gb|EEE94105.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/410 (89%), Positives = 386/410 (94%)
Query: 62 VQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAI 121
+QVD+SLSPRV AVKPSKTVAITDQATALAQAGV VIRLAAGEPDFDTP +IAEAGINAI
Sbjct: 1 MQVDISLSPRVTAVKPSKTVAITDQATALAQAGVPVIRLAAGEPDFDTPAVIAEAGINAI 60
Query: 122 REGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDE 181
REG TRYTPNAGT ELR AIC KLKEENG+SY PDQILVSNGAKQSI QA+LAVCSPGDE
Sbjct: 61 REGHTRYTPNAGTQELRVAICQKLKEENGISYKPDQILVSNGAKQSIYQAILAVCSPGDE 120
Query: 182 VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT 241
VIIPAPFWVSYPEMAR+ADATPVILPT ISENFLLDPK LESKL EKSRLLILCSPSNPT
Sbjct: 121 VIIPAPFWVSYPEMARLADATPVILPTSISENFLLDPKQLESKLNEKSRLLILCSPSNPT 180
Query: 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 301
GSVYPK LL+EIA+IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS
Sbjct: 181 GSVYPKKLLEEIAKIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 240
Query: 302 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 361
KAFAMTGWRLGY+AGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE VS MV
Sbjct: 241 KAFAMTGWRLGYLAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEAVSTMV 300
Query: 362 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL 421
AFRERRDFL+KSFGE+EGV +SEP GAFYLFIDFS+YYG+E EGFGKI++S++LCRYLL
Sbjct: 301 TAFRERRDFLIKSFGEMEGVGLSEPLGAFYLFIDFSSYYGAEVEGFGKIDDSDALCRYLL 360
Query: 422 DKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRPGVPV 471
D+AQVALVPG AFGDD+CIRISYAASLTTLQAAVERIKK LL L+ VPV
Sbjct: 361 DQAQVALVPGVAFGDDSCIRISYAASLTTLQAAVERIKKALLPLKSAVPV 410
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449469136|ref|XP_004152277.1| PREDICTED: bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase-like [Cucumis sativus] gi|449484357|ref|XP_004156861.1| PREDICTED: bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/444 (83%), Positives = 399/444 (89%), Gaps = 1/444 (0%)
Query: 29 GSVSFPSRYLH-NFNLNKSDRRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQA 87
GS+SFPS+ L + + ++V VMA + + V VD+SLSPRVN+VKPSKTVAI+DQA
Sbjct: 32 GSLSFPSQRLAPSLKSVQLTKKVKPVMAGNIPDHVSVDISLSPRVNSVKPSKTVAISDQA 91
Query: 88 TALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147
TAL QAGV VIRLAAGEPDFDTP I EAGINAIR+G+TRYT NAGTLELR AICHKLK+
Sbjct: 92 TALVQAGVPVIRLAAGEPDFDTPAPITEAGINAIRDGYTRYTANAGTLELRQAICHKLKD 151
Query: 148 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILP 207
ENGLSYTPDQILVSNGAKQSILQAV+AVCSPGDEVIIPAPFWVSYPEMAR+ADATPVILP
Sbjct: 152 ENGLSYTPDQILVSNGAKQSILQAVVAVCSPGDEVIIPAPFWVSYPEMARLADATPVILP 211
Query: 208 TRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLS 267
T I NFLLDPK+LESK+TEKSRLLILCSPSNPTGSVYPK LL++IA IVAKHPRLLVLS
Sbjct: 212 THIDNNFLLDPKLLESKITEKSRLLILCSPSNPTGSVYPKELLEKIAEIVAKHPRLLVLS 271
Query: 268 DEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI 327
DEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV+AC KI
Sbjct: 272 DEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVSACGKI 331
Query: 328 QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387
QSQ TSGASSISQKA VAALG+GYAGGE V+ MVKAFRERRD+LVKSFGEL GVK+SEPQ
Sbjct: 332 QSQSTSGASSISQKAAVAALGMGYAGGEAVATMVKAFRERRDYLVKSFGELAGVKISEPQ 391
Query: 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAAS 447
GAFYLF+DFS+YYG+E EGFG I NSESLCRYLL+K QVALVPGDAFGDDTCIRISYA S
Sbjct: 392 GAFYLFLDFSSYYGAEVEGFGVINNSESLCRYLLEKGQVALVPGDAFGDDTCIRISYAES 451
Query: 448 LTTLQAAVERIKKGLLTLRPGVPV 471
L+ LQAAVERIKK L RP VPV
Sbjct: 452 LSVLQAAVERIKKALEAARPVVPV 475
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255576156|ref|XP_002528972.1| aspartate aminotransferase, putative [Ricinus communis] gi|223531562|gb|EEF33391.1| aspartate aminotransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/485 (75%), Positives = 417/485 (85%), Gaps = 18/485 (3%)
Query: 2 ANSLHSSTSFISNPVNFGHSKIP----AQIPGSVSFPSRYLHNFNLNKSDRRVLRVMACS 57
A SL + TS IS+ H + +Q S+ FPSR +NL R + S
Sbjct: 3 AASLRTLTSSISHLGGSAHQSVALDLGSQPSRSLFFPSR---PYNLFLKPLEATRQVGSS 59
Query: 58 GV-----------EEVQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPD 106
+ +E+++D+SLSPRVN++KPSKTVAI D AT+L +AG+ VIRLAAGEPD
Sbjct: 60 RISAVVKPESDSDQEMELDISLSPRVNSLKPSKTVAIMDHATSLLEAGIPVIRLAAGEPD 119
Query: 107 FDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166
FDTP IAEAGINAIREG+TRYTPNAGTLE+R+AICHKLKEENGLSY P++ILVSNGAKQ
Sbjct: 120 FDTPTPIAEAGINAIREGYTRYTPNAGTLEVRTAICHKLKEENGLSYAPNEILVSNGAKQ 179
Query: 167 SILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 226
SI+QAVLAVCSPGDEV+IPAPFWVSYPE+AR+ADATPVI+PT ISENFL+DP++LESK++
Sbjct: 180 SIVQAVLAVCSPGDEVLIPAPFWVSYPEIARLADATPVIVPTSISENFLMDPRLLESKIS 239
Query: 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS 286
EKSRLLILCSPSNPTGSVYPK LL+EIARIVAK+PRLLVLSDEIYEHIIYAPATHTSFAS
Sbjct: 240 EKSRLLILCSPSNPTGSVYPKELLEEIARIVAKYPRLLVLSDEIYEHIIYAPATHTSFAS 299
Query: 287 LPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAA 346
LPGMWERTLTVNGFSKAFAMTGWRLGY+A P+HF+AACNKIQSQFTSGASSI+QKA VAA
Sbjct: 300 LPGMWERTLTVNGFSKAFAMTGWRLGYLAAPRHFLAACNKIQSQFTSGASSIAQKAAVAA 359
Query: 347 LGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEG 406
LGLG+AGGE VS MVKAF+ERRDFL+KSFGE+EGV+MSEPQGAFYLFID S+YYG E EG
Sbjct: 360 LGLGFAGGEAVSTMVKAFKERRDFLIKSFGEMEGVRMSEPQGAFYLFIDVSSYYGVEVEG 419
Query: 407 FGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 466
FGKI++S+SLCRYLLD AQVA+VPG AFGDD+CIRISYAASLTTLQAAVERIKK L+ L+
Sbjct: 420 FGKIDDSDSLCRYLLDNAQVAVVPGGAFGDDSCIRISYAASLTTLQAAVERIKKALIPLK 479
Query: 467 PGVPV 471
P VPV
Sbjct: 480 PAVPV 484
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525505|ref|XP_003531365.1| PREDICTED: bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/405 (87%), Positives = 380/405 (93%)
Query: 61 EVQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINA 120
+ VD+SLSPRVNAVKPSKTVAI+D ATAL QAGV VIRLAAGEPDFDTP IAEAGINA
Sbjct: 54 DFDVDLSLSPRVNAVKPSKTVAISDHATALFQAGVPVIRLAAGEPDFDTPAPIAEAGINA 113
Query: 121 IREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGD 180
IREG+TRYTPNAGT+ELR AIC KLKEENG+SYTPDQ++VSNGAKQSI QAVLAVCSPGD
Sbjct: 114 IREGYTRYTPNAGTMELRQAICRKLKEENGISYTPDQVVVSNGAKQSIAQAVLAVCSPGD 173
Query: 181 EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNP 240
EVIIPAPFWVSYPEMAR+ADATPVILPT IS+NFLLDPK+LESK+TE+SRLLILCSPSNP
Sbjct: 174 EVIIPAPFWVSYPEMARLADATPVILPTLISDNFLLDPKLLESKITERSRLLILCSPSNP 233
Query: 241 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF 300
TGSVYPK LL+EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW+RTLTVNGF
Sbjct: 234 TGSVYPKELLEEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWDRTLTVNGF 293
Query: 301 SKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 360
SKAFAMTGWRLGYIAGPKHFVAAC KIQSQFTSGASSI+QKA VAALGLG+AGGE VS M
Sbjct: 294 SKAFAMTGWRLGYIAGPKHFVAACGKIQSQFTSGASSIAQKAAVAALGLGHAGGEAVSTM 353
Query: 361 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYL 420
VKAFRERRDFLVKSF E++GVK+SEPQGAFYLF+DFS YYG EAEGFGKIE+SESLCRYL
Sbjct: 354 VKAFRERRDFLVKSFREIDGVKISEPQGAFYLFLDFSFYYGREAEGFGKIEDSESLCRYL 413
Query: 421 LDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTL 465
LD QVALVPG AFGDDTCIRISYA SLTTLQAAVER+K+ L+ L
Sbjct: 414 LDVGQVALVPGSAFGDDTCIRISYAESLTTLQAAVERVKRALIPL 458
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388500244|gb|AFK38188.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/473 (78%), Positives = 405/473 (85%), Gaps = 12/473 (2%)
Query: 1 MANS-LHSSTSFISNPVNFGHSKIPA---QIPGSVSFPSRYLHNF----NLNKSDRRVLR 52
MAN+ LH++T+ ++F +PA S+SF S L F + +RR
Sbjct: 1 MANTFLHNNTTCT---ISFPDKSLPAISVSRHRSLSFSSN-LSTFPKMSTAVEQNRRETI 56
Query: 53 VMACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVL 112
++ E++V +SLSPRVNAVKPS+TVAITDQATAL QAGV VIRLAAGEPDFDTP +
Sbjct: 57 IVKSKSDSELEVGISLSPRVNAVKPSRTVAITDQATALVQAGVPVIRLAAGEPDFDTPAV 116
Query: 113 IAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 172
IAEAG+NAI EG+TRYTPNAGTLE+R AICHKLKEENGL YTPDQI+V+NGAKQSI QAV
Sbjct: 117 IAEAGVNAICEGYTRYTPNAGTLEIRQAICHKLKEENGLDYTPDQIVVTNGAKQSITQAV 176
Query: 173 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLL 232
+AVCSPGDEVIIPAPFWVSYPEMAR+ADATPVILPT IS NFLLDPK+LESK+TEKSRLL
Sbjct: 177 IAVCSPGDEVIIPAPFWVSYPEMARLADATPVILPTSISNNFLLDPKLLESKITEKSRLL 236
Query: 233 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292
ILCSPSNPTGSVYPK LL+EIA+IVAKHPRLLV+SDEIYEHIIYAP THTSFASLP MW
Sbjct: 237 ILCSPSNPTGSVYPKYLLEEIAKIVAKHPRLLVISDEIYEHIIYAPTTHTSFASLPRMWN 296
Query: 293 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA 352
RTLTVNGFSKAFAMTGWRLGYIAGPKHF+AA KIQSQFTSG SSISQKAGVAALGLGYA
Sbjct: 297 RTLTVNGFSKAFAMTGWRLGYIAGPKHFIAAVGKIQSQFTSGPSSISQKAGVAALGLGYA 356
Query: 353 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 412
GGE VS MVKA RERRD+LVKSF E++GVK+SEPQGAFYLFIDFS+YYG EAEGFGKIEN
Sbjct: 357 GGEAVSTMVKALRERRDYLVKSFSEIDGVKISEPQGAFYLFIDFSSYYGKEAEGFGKIEN 416
Query: 413 SESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTL 465
SES CRYLLDK QVALVPG AFGDDTCIRISYAASL TLQAAVE IKK L+ L
Sbjct: 417 SESFCRYLLDKGQVALVPGSAFGDDTCIRISYAASLPTLQAAVENIKKALIPL 469
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 471 | ||||||
| UNIPROTKB|E9L7A5 | 479 | E9L7A5 "Bifunctional aspartate | 0.940 | 0.924 | 0.802 | 1.4e-190 | |
| TAIR|locus:2060435 | 475 | AAT "AT2G22250" [Arabidopsis t | 0.987 | 0.978 | 0.713 | 3.4e-171 | |
| TIGR_CMR|GSU_1242 | 399 | GSU_1242 "aspartate aminotrans | 0.845 | 0.997 | 0.442 | 4.9e-85 | |
| TIGR_CMR|CBU_0517 | 423 | CBU_0517 "aspartate aminotrans | 0.817 | 0.910 | 0.453 | 6.2e-85 | |
| TIGR_CMR|SPO_1264 | 400 | SPO_1264 "aspartate aminotrans | 0.828 | 0.975 | 0.426 | 2e-81 | |
| UNIPROTKB|Q0BXZ8 | 403 | aatA "Aspartate aminotransfera | 0.834 | 0.975 | 0.418 | 5.2e-81 | |
| TIGR_CMR|ECH_0732 | 398 | ECH_0732 "aspartate aminotrans | 0.819 | 0.969 | 0.420 | 1.6e-77 | |
| TIGR_CMR|CHY_1491 | 392 | CHY_1491 "aspartate aminotrans | 0.823 | 0.989 | 0.402 | 1.2e-72 | |
| UNIPROTKB|Q2GK59 | 394 | aspC "Aspartate aminotransfera | 0.813 | 0.972 | 0.407 | 8.6e-72 | |
| TIGR_CMR|APH_0660 | 394 | APH_0660 "aspartate aminotrans | 0.813 | 0.972 | 0.407 | 8.6e-72 |
| UNIPROTKB|E9L7A5 E9L7A5 "Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase" [Petunia x hybrida (taxid:4102)] | Back alignment and assigned GO terms |
|---|
Score = 1847 (655.2 bits), Expect = 1.4e-190, P = 1.4e-190
Identities = 362/451 (80%), Positives = 398/451 (88%)
Query: 28 PGSVSFPSRYLHNFNLNKS-------DRRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKT 80
P S+SF S LH F+L S RR V+ +++V+VD+SLSPRVN+VKPSKT
Sbjct: 30 PKSISFSSN-LHTFSLKSSGSRRQLYSRRTGAVVIMQSMDKVEVDISLSPRVNSVKPSKT 88
Query: 81 VAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSA 140
VAITDQATAL QAGV VIRLAAGEPDFDTP I EAGINAIREG TRYTPNAGT+ELRSA
Sbjct: 89 VAITDQATALVQAGVPVIRLAAGEPDFDTPAPIVEAGINAIREGHTRYTPNAGTMELRSA 148
Query: 141 ICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 200
I HKLKEENGLSYTPDQILVSNGAKQSI+QAVLAVCSPGDEV+IPAP+WVSYPEMAR+AD
Sbjct: 149 ISHKLKEENGLSYTPDQILVSNGAKQSIIQAVLAVCSPGDEVLIPAPYWVSYPEMARLAD 208
Query: 201 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 260
ATPVILPT ISE+FLLDPK+LESKLTEKSRLLILCSPSNPTGSVYP+ LL++IA IVA+H
Sbjct: 209 ATPVILPTSISEDFLLDPKLLESKLTEKSRLLILCSPSNPTGSVYPRKLLEQIAEIVARH 268
Query: 261 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 320
PRLLV+SDEIYEHIIYAPATHTSFASLPGMW+RTLTVNGFSKAFAMTGWRLGYIAGPKHF
Sbjct: 269 PRLLVISDEIYEHIIYAPATHTSFASLPGMWDRTLTVNGFSKAFAMTGWRLGYIAGPKHF 328
Query: 321 VAACNKIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKAFRERRDFLVKSFGELEG 380
+AACNKIQSQFTSGASSISQK E+V+ MVK+FRERRD+LVKSFGE+EG
Sbjct: 329 IAACNKIQSQFTSGASSISQKAAVAALGLGYAGGELVATMVKSFRERRDYLVKSFGEIEG 388
Query: 381 VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 440
VK+SEP+GAFYLFID S+YYG E +GFG I NSESLCRYLLDKAQVALVPGDAFGDDTCI
Sbjct: 389 VKISEPRGAFYLFIDLSSYYGVEVDGFGSINNSESLCRYLLDKAQVALVPGDAFGDDTCI 448
Query: 441 RISYAASLTTLQAAVERIKKGLLTLRPGVPV 471
RISYAASL+TLQAAVERIKK L+T++P VPV
Sbjct: 449 RISYAASLSTLQAAVERIKKALVTIKPPVPV 479
|
|
| TAIR|locus:2060435 AAT "AT2G22250" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1664 (590.8 bits), Expect = 3.4e-171, P = 3.4e-171
Identities = 336/471 (71%), Positives = 380/471 (80%)
Query: 7 SSTSFISNPVNFGHSKIPAQIP-GSVSFPSRYLHNFNLNKSDRRVLRVMACSGVEEVQ-- 63
SS + IS+ G S ++ P GSV F +F+ KS R+ A + + +
Sbjct: 5 SSVAVISSAAARGESFPDSKKPIGSVRFQQPLRLSFSYCKSGNMSSRICAMAKPNDAETL 64
Query: 64 ---VDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINA 120
VD+SLSPRV ++KPSKT+ ITD A L Q+GV VIRLAAGEPDFDTP ++AEAGINA
Sbjct: 65 SSSVDMSLSPRVQSLKPSKTMVITDLAATLVQSGVPVIRLAAGEPDFDTPKVVAEAGINA 124
Query: 121 IREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGD 180
IREGFTRYT NAG ELR AIC KLKEENGLSY PDQILVSNGAKQS+LQAVLAVCSPGD
Sbjct: 125 IREGFTRYTLNAGITELREAICRKLKEENGLSYAPDQILVSNGAKQSLLQAVLAVCSPGD 184
Query: 181 EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNP 240
EVIIPAP+WVSY E AR+ADATPV++PT+IS NFLLDPK LESKLTEKSRLLILCSPSNP
Sbjct: 185 EVIIPAPYWVSYTEQARLADATPVVIPTKISNNFLLDPKDLESKLTEKSRLLILCSPSNP 244
Query: 241 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF 300
TGSVYPK+LL+EIARI+AKHPRLLVLSDEIYEHIIYAPATHTSFASLP M+ERTLTVNGF
Sbjct: 245 TGSVYPKSLLEEIARIIAKHPRLLVLSDEIYEHIIYAPATHTSFASLPDMYERTLTVNGF 304
Query: 301 SKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKM 360
SKAFAMTGWRLGY+AGPKH VAAC+K+Q Q +SGASSI+QK E V++M
Sbjct: 305 SKAFAMTGWRLGYLAGPKHIVAACSKLQGQVSSGASSIAQKAGVAALGLGKAGGETVAEM 364
Query: 361 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYL 420
VKA+RERRDFLVKS G+++GVK+SEPQGAFYLFIDFS YYGSEAEGFG I +S SL Y
Sbjct: 365 VKAYRERRDFLVKSLGDIKGVKISEPQGAFYLFIDFSAYYGSEAEGFGLINDSSSLALYF 424
Query: 421 LDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRPGVPV 471
LDK QVA+VPGDAFGDD+CIRISYA SL LQAAVE+I+K L LR V V
Sbjct: 425 LDKFQVAMVPGDAFGDDSCIRISYATSLDVLQAAVEKIRKALEPLRATVSV 475
|
|
| TIGR_CMR|GSU_1242 GSU_1242 "aspartate aminotransferase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
Identities = 178/402 (44%), Positives = 248/402 (61%)
Query: 66 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGF 125
+ L+ RVN ++PS T++I +A AL G+ V+ AGEPDFDTP I EAG AI GF
Sbjct: 1 MKLADRVNKIQPSPTLSIDAKAKALKAQGIDVVGFGAGEPDFDTPANIKEAGKKAIDAGF 60
Query: 126 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIP 185
T+Y P G +L+ AI K+K ++GL YT D+I V+ GAK ++ A+ GDEVIIP
Sbjct: 61 TKYMPVGGADDLKDAIIAKMKRDHGLEYTRDEISVACGAKHTLYNISQALIQEGDEVIIP 120
Query: 186 APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245
P+WVSYP+ +A TPV + T S F + + LE +T ++ +IL SP NPTGS Y
Sbjct: 121 GPYWVSYPDQIVLAGGTPVFIMTDESTGFKITAEQLEKAITPRTVYVILNSPCNPTGSTY 180
Query: 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA-SLPGMWERTLTVNGFSKAF 304
K+ L +A ++ KHP + V+SD+IYE ++Y + + P + +RT+ VNG SKA+
Sbjct: 181 TKDELKALAAVLLKHPHVYVVSDDIYEKLLYDGLEFCNIPMACPELKDRTIIVNGVSKAY 240
Query: 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKAF 364
+MTGWR+GY GPK +AA K+QSQ TS A+SI+QK E V++MVK F
Sbjct: 241 SMTGWRIGYACGPKALMAAMTKMQSQSTSNATSIAQKASVEALNGPQ---EPVAEMVKEF 297
Query: 365 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 424
+RR ++V + GV + GAFY F +FS YG KIENS YLL+ A
Sbjct: 298 EKRRTYIVDRLNAIPGVTCFKSTGAFYAFPNFSGVYGKTTPAGKKIENSSDFAAYLLEDA 357
Query: 425 QVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 466
+VALVPG AFGDD R+SYA SL T++ ++RI++ + L+
Sbjct: 358 KVALVPGIAFGDDRYARLSYATSLETIKKGLDRIEEAIGNLK 399
|
|
| TIGR_CMR|CBU_0517 CBU_0517 "aspartate aminotransferase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
Identities = 179/395 (45%), Positives = 252/395 (63%)
Query: 65 DVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG 124
DV LS R ++PS T+A++D A L G VI L+AGEPDFDTP I ++ I AI+EG
Sbjct: 32 DV-LSVRAQQLEPSVTLAVSDLARELLNKGHDVISLSAGEPDFDTPDFIKQSAIKAIQEG 90
Query: 125 FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVII 184
FT+YT GT L++AI HKLK +N L+Y P +ILVS GAKQSI ++ + GDE II
Sbjct: 91 FTKYTNVDGTPALKAAIVHKLKRDNHLNYEPSEILVSGGAKQSIYNVLMGTLNAGDEAII 150
Query: 185 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 244
PAP+WVSYP M ++A+A P+I+ I +NF L P L +T +SRLLIL SP+NP+G
Sbjct: 151 PAPYWVSYPPMVQLAEAKPIIISATIDQNFKLTPGQLSQAITPQSRLLILNSPNNPSGVA 210
Query: 245 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKA 303
Y ++ L +A ++ +HP++L+LSDEIYE+I++ + ++ P + +RT+ +NG SKA
Sbjct: 211 YTESELKALADVLMEHPQILILSDEIYEYILWGQNRFVNILNVCPELRDRTIIINGASKA 270
Query: 304 FAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKA 363
+AMTGWR+GY AGPK + A KIQSQ TS +SI+Q + M +A
Sbjct: 271 YAMTGWRIGYAAGPKSIIQAMKKIQSQSTSSPNSIAQVAATTALGAQRGDF---AYMYEA 327
Query: 364 FRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 423
++ R D ++K+ +++GV GAFYLF D S + + G +E+ L YLLDK
Sbjct: 328 YKTRHDLVLKALNQMKGVHCIPADGAFYLFPDVS----AAIQQLG-LEDDIKLGTYLLDK 382
Query: 424 AQVALVPGDAFGDDTCIRISYAASLTTLQAAVERI 458
+VA+VPG AFG +R+S A S LQ A+ER+
Sbjct: 383 TKVAVVPGSAFGSPGHVRLSCATSTEKLQEALERL 417
|
|
| TIGR_CMR|SPO_1264 SPO_1264 "aspartate aminotransferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
Identities = 168/394 (42%), Positives = 242/394 (61%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
LS ++ VKPS TVA+T +A L G +I L+AGEPDFDTP I +A AI G T+
Sbjct: 4 LSATLSRVKPSPTVAMTAKAAELKAGGRDIIGLSAGEPDFDTPQNIKDAATAAIAAGKTK 63
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YT G +EL+ A+C K++ ++GLSYTP Q+ V +G KQ++ A++A +PGDEVIIPAP
Sbjct: 64 YTAPDGIIELKQAVCAKMQRDHGLSYTPAQVSVGSGGKQTLYNALMATLNPGDEVIIPAP 123
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+WVSYP+M + TPV++ T + F L P LE+ +T +++ I SPSNPTG+ Y +
Sbjct: 124 YWVSYPDMVLLGGGTPVVVETALESAFKLTPAQLEAAITPRTKWFIFNSPSNPTGAGYSR 183
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 306
+ L + ++ +HP + V+SD++YEH+ Y + A + PG++ERTLT NG SKA+AM
Sbjct: 184 DELKGLTDVLMRHPHVWVMSDDMYEHLAYDGFAFCTPAQVEPGLYERTLTCNGTSKAYAM 243
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKAFRE 366
TGWR+GY AGP +AA KIQSQ TS +ISQ E ++ F+
Sbjct: 244 TGWRIGYAAGPVGLIAAMRKIQSQSTSNPCTISQ---WAAVEALNGTQEFLAPNNALFKR 300
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
RRD ++ +EG+ P+GAFY++ + G +I++ E+ C LL++A V
Sbjct: 301 RRDLVLSMLNAIEGIDCPTPEGAFYVYPSIAGLIGKTTPKGTRIDSDETFCTALLEEADV 360
Query: 427 ALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 460
A+V G AFG R+SYAAS L A RI++
Sbjct: 361 AVVFGAAFGLSPNFRVSYAASDAALTEACTRIQR 394
|
|
| UNIPROTKB|Q0BXZ8 aatA "Aspartate aminotransferase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] | Back alignment and assigned GO terms |
|---|
Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
Identities = 166/397 (41%), Positives = 242/397 (60%)
Query: 65 DVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG 124
D+ LS + VKPS T+A+T +A + + G+ VI L AGEPDFDTP I EA I A+REG
Sbjct: 4 DIRLSDAIARVKPSATIAVTTKANEMKRQGLDVIGLGAGEPDFDTPENIKEAAIRAMREG 63
Query: 125 FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVII 184
T+YTP+ G EL+ AI K ENGL+Y P Q+ VS G K + A +A + GDEV+I
Sbjct: 64 KTKYTPSDGIPELKEAIVAKFARENGLTYKPSQVNVSPGGKAVLFNAFMATLNAGDEVVI 123
Query: 185 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 244
PAP+WVSYPEM + ATPV +P + L P+ LE+ +T K++ LIL SPSNPTG+
Sbjct: 124 PAPYWVSYPEMVLLCGATPVAVPCGADTAYKLSPEKLEAAITPKTKWLILNSPSNPTGAA 183
Query: 245 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKA 303
Y L +A ++ +HP++ +L+D++YEH++Y + + A + P +++RTLT+NG SKA
Sbjct: 184 YTGAELKALADVLLRHPQVWILTDDMYEHLVYDGFEYKTIAQVEPALYDRTLTMNGVSKA 243
Query: 304 FAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKA 363
+AMTGWR+GY AGP+ + A K+ Q TS SISQ V A
Sbjct: 244 YAMTGWRIGYAAGPEKLIGAMRKVMDQSTSNPCSISQWASVEALNGPQDFLPVFRA---A 300
Query: 364 FRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 423
+ +RR+ +V + G+ +P+GAFY++ + G + G I++ ++ LL++
Sbjct: 301 YAKRRNLMVDGLNQAAGIVCPKPEGAFYVYPSCAGLIGKKTAGGAVIDSDKTFAAELLEQ 360
Query: 424 AQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 460
+VA+V G+AFG RISYA S L A+ RI++
Sbjct: 361 EKVAIVFGEAFGLPETFRISYATSDAALTEALVRIQR 397
|
|
| TIGR_CMR|ECH_0732 ECH_0732 "aspartate aminotransferase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
Identities = 165/392 (42%), Positives = 233/392 (59%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
++ R+ +KPS T+ I +QA L +GV VI L+AGEPDFDTP I +A I+AI G T+
Sbjct: 4 IAERMGCIKPSPTLEIANQAQKLKMSGVDVISLSAGEPDFDTPQHIKQAAIDAINSGKTK 63
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YT G +EL+ I + K+++ L Y +QI V NGAKQ I +A + GDEVIIP+P
Sbjct: 64 YTAVNGIIELKKVIIDRFKQDHDLIYNVNQISVGNGAKQCIYNLFMATINSGDEVIIPSP 123
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+WVSYP++ +I+ PVI+ E F L P +LES +TEK++ LI+ SP+NPTG VY
Sbjct: 124 YWVSYPDVVKISGGNPVIVDC--GETFKLTPDILESVITEKTKWLIMNSPNNPTGLVYTY 181
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 306
L IA ++ K+P + V++D+IY IIY + A + P +++R T+NG SKA+AM
Sbjct: 182 EELKSIAEVLLKYPNIYVMTDDIYSKIIYDDLEFFTIAQVEPRLYDRVFTINGVSKAYAM 241
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKAFRE 366
TGWR+GYIAG ++A + IQSQ T+ +SI+Q E + + K F
Sbjct: 242 TGWRIGYIAGDSRVISAISVIQSQSTTNPNSIAQ---FASIQALAGDQEFLKERNKIFAA 298
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
RRD +V + + +PQGAFY+FI G I ++ +YLL+ V
Sbjct: 299 RRDMMVDMVNNTSLLSVKKPQGAFYVFISCKKLIGKSTRNGLVINSAMDFTKYLLEDYNV 358
Query: 427 ALVPGDAFGDDTCIRISYAASLTTLQAAVERI 458
A+VPG+AFG RISYA S L A +RI
Sbjct: 359 AVVPGEAFGAQGFFRISYATSTEHLSKACDRI 390
|
|
| TIGR_CMR|CHY_1491 CHY_1491 "aspartate aminotransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
Identities = 160/398 (40%), Positives = 234/398 (58%)
Query: 69 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRY 128
S R + S T+AI +A L + G VI GEPDFDTP I EA INA+R+G T+Y
Sbjct: 3 SERALQIGESPTLAIDKKAKELIKQGKKVINFGVGEPDFDTPEYIKEAAINALRQGKTKY 62
Query: 129 TPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPF 188
TP G ELR I L + G++Y +++V+ GAK + + +PGDEVIIP P+
Sbjct: 63 TPVGGIPELRKKIAEYLTQRTGVNYEDQEVVVTCGAKHGLYNIFQVILNPGDEVIIPVPY 122
Query: 189 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKN 248
WVSY E ++A P+++PT ENF L P L + L +++ +I+ SPSNPTG VY +
Sbjct: 123 WVSYVEQVKLAGGVPILVPT--GENFKLAPDKLINYLNNRTKAIIINSPSNPTGVVYSFD 180
Query: 249 LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 308
L + R++ K +L+++DEIYE I ++ + A+ P + E+T VNGFSK+ +MTG
Sbjct: 181 ELKSLGRLL-KDREILIIADEIYERIYFSEKPISFVAANPELKEKTFIVNGFSKSHSMTG 239
Query: 309 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKAFRERR 368
WRLGY+A + + A ++QS TS +S +Q + V KMV+ F++RR
Sbjct: 240 WRLGYVAASRQYAAKLIELQSHQTSNPTSFAQ---WGALAALTIEDDSVEKMVQEFKKRR 296
Query: 369 DFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSE-SLCRYLLDKAQVA 427
DF+V EL+ +K+ EP GAFY+F +G + G KI N+ +L+ VA
Sbjct: 297 DFVVSRLQELK-LKVIEPAGAFYVFPRIDNCFGKKHSG--KIINTSIDFAEIMLEYYLVA 353
Query: 428 LVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTL 465
+VPG AFGDD +R+SYA SL L+ ++R++ L L
Sbjct: 354 MVPGIAFGDDRFVRLSYALSLADLKEGLKRLETFLKNL 391
|
|
| UNIPROTKB|Q2GK59 aspC "Aspartate aminotransferase" [Anaplasma phagocytophilum HZ (taxid:212042)] | Back alignment and assigned GO terms |
|---|
Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
Identities = 160/393 (40%), Positives = 229/393 (58%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
LS R+N +KPS T+ ++ L G+ +I L AGEPDFDTP + +A I AI G T+
Sbjct: 2 LSERMNCIKPSPTLELSRLTLELRAQGLDIISLGAGEPDFDTPDHVKDAAIAAINAGKTK 61
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YTP G EL+ +I ++ + G+ Y +Q+LV GAKQ I +A + GDEVIIPAP
Sbjct: 62 YTPVEGIPELKDSIIRSVRRDYGIDYVANQVLVGAGAKQCIYNLFMATINEGDEVIIPAP 121
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+WVSYP+M +IA PVI+ + L P++L +T K++ LI+ SPSNPTG+VY +
Sbjct: 122 YWVSYPDMVKIAGGAPVIV--NCGDYLKLTPELLRGAITPKTKWLIINSPSNPTGAVYSR 179
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 306
L IA ++ +H +LV++D+IY ++Y A + P +++R VNG SKA++M
Sbjct: 180 EELAAIAEVLKQHKHVLVITDDIYAKLVY-DAEFCGILQVEPSLYDRVYIVNGVSKAYSM 238
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKAFRE 366
TGWR+GYI G + A + IQSQ T+ A+SI+Q + +KAF
Sbjct: 239 TGWRIGYILGNAEAIKAVSTIQSQSTTNANSIAQYAAIAALDGDQSFLDT---RIKAFAR 295
Query: 367 RRDFLVKSFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 425
RRD ++ + GV ++ PQGAFY+FI G A G I + + ++LL+ +
Sbjct: 296 RRDRVMDAVLS-SGVLQADVPQGAFYVFISCGNAIGKHAPKVGVINDGSDMAKHLLNH-R 353
Query: 426 VALVPGDAFGDDTCIRISYAASLTTLQAAVERI 458
VA+VPG AFG RISYA S L A ERI
Sbjct: 354 VAVVPGVAFGAPNFFRISYALSDDRLSEACERI 386
|
|
| TIGR_CMR|APH_0660 APH_0660 "aspartate aminotransferase" [Anaplasma phagocytophilum HZ (taxid:212042)] | Back alignment and assigned GO terms |
|---|
Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
Identities = 160/393 (40%), Positives = 229/393 (58%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
LS R+N +KPS T+ ++ L G+ +I L AGEPDFDTP + +A I AI G T+
Sbjct: 2 LSERMNCIKPSPTLELSRLTLELRAQGLDIISLGAGEPDFDTPDHVKDAAIAAINAGKTK 61
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YTP G EL+ +I ++ + G+ Y +Q+LV GAKQ I +A + GDEVIIPAP
Sbjct: 62 YTPVEGIPELKDSIIRSVRRDYGIDYVANQVLVGAGAKQCIYNLFMATINEGDEVIIPAP 121
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+WVSYP+M +IA PVI+ + L P++L +T K++ LI+ SPSNPTG+VY +
Sbjct: 122 YWVSYPDMVKIAGGAPVIV--NCGDYLKLTPELLRGAITPKTKWLIINSPSNPTGAVYSR 179
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 306
L IA ++ +H +LV++D+IY ++Y A + P +++R VNG SKA++M
Sbjct: 180 EELAAIAEVLKQHKHVLVITDDIYAKLVY-DAEFCGILQVEPSLYDRVYIVNGVSKAYSM 238
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKAFRE 366
TGWR+GYI G + A + IQSQ T+ A+SI+Q + +KAF
Sbjct: 239 TGWRIGYILGNAEAIKAVSTIQSQSTTNANSIAQYAAIAALDGDQSFLDT---RIKAFAR 295
Query: 367 RRDFLVKSFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 425
RRD ++ + GV ++ PQGAFY+FI G A G I + + ++LL+ +
Sbjct: 296 RRDRVMDAVLS-SGVLQADVPQGAFYVFISCGNAIGKHAPKVGVINDGSDMAKHLLNH-R 353
Query: 426 VALVPGDAFGDDTCIRISYAASLTTLQAAVERI 458
VA+VPG AFG RISYA S L A ERI
Sbjct: 354 VAVVPGVAFGAPNFFRISYALSDDRLSEACERI 386
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q02635 | AATA_RHIME | 2, ., 6, ., 1, ., 1 | 0.4365 | 0.8280 | 0.975 | yes | no |
| Q1RGV0 | AAT_RICBR | 2, ., 6, ., 1, ., 1 | 0.4385 | 0.8386 | 0.9899 | yes | no |
| Q56232 | AAT_THET8 | 2, ., 6, ., 1, ., 1 | 0.4307 | 0.8004 | 0.9792 | yes | no |
| P53001 | AAT1_BACSU | 2, ., 6, ., 1, ., 1 | 0.3879 | 0.8174 | 0.9796 | yes | no |
| Q4UND3 | AAT_RICFE | 2, ., 6, ., 1, ., 1 | 0.4278 | 0.8301 | 0.9559 | yes | no |
| Q5F4K8 | PAT_PINPS | 2, ., 6, ., 1, ., 1 | 0.7869 | 0.8450 | 0.8089 | N/A | no |
| E9L7A5 | PAT_PETHY | 2, ., 6, ., 1, ., 7, 9 | 0.8292 | 0.9405 | 0.9248 | N/A | no |
| O67781 | AAT_AQUAE | 2, ., 6, ., 1, ., 1 | 0.4141 | 0.8195 | 0.9796 | yes | no |
| Q9SIE1 | PAT_ARATH | 2, ., 6, ., 1, ., 7, 9 | 0.7372 | 0.9893 | 0.9810 | yes | no |
| Q68XV9 | AAT_RICTY | 2, ., 6, ., 1, ., 1 | 0.4285 | 0.8386 | 0.9899 | yes | no |
| Q972A2 | AAT_SULTO | 2, ., 6, ., 1, ., 1 | 0.3143 | 0.8046 | 0.9498 | yes | no |
| Q9V0L2 | AAT_PYRAB | 2, ., 6, ., 1, ., 1 | 0.405 | 0.8067 | 0.9768 | yes | no |
| O53870 | DAPC_MYCTU | 2, ., 6, ., 1, ., 1, 7 | 0.3041 | 0.8025 | 0.9521 | yes | no |
| Q9ZE56 | AAT_RICPR | 2, ., 6, ., 1, ., 1 | 0.4351 | 0.8259 | 0.9749 | yes | no |
| Q92JE7 | AAT_RICCN | 2, ., 6, ., 1, ., 1 | 0.4242 | 0.8322 | 0.9775 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.6.1 | 0.983 |
| 4th Layer | 2.6.1.1 | 0.979 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 471 | |||
| PRK05764 | 393 | PRK05764, PRK05764, aspartate aminotransferase; Pr | 0.0 | |
| COG0436 | 393 | COG0436, COG0436, Aspartate/tyrosine/aromatic amin | 1e-147 | |
| PRK06107 | 402 | PRK06107, PRK06107, aspartate aminotransferase; Pr | 1e-132 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 1e-109 | |
| PRK07682 | 378 | PRK07682, PRK07682, hypothetical protein; Validate | 1e-107 | |
| PRK07683 | 387 | PRK07683, PRK07683, aminotransferase A; Validated | 2e-97 | |
| PRK07309 | 391 | PRK07309, PRK07309, aromatic amino acid aminotrans | 8e-90 | |
| PRK08361 | 391 | PRK08361, PRK08361, aspartate aminotransferase; Pr | 6e-88 | |
| PRK06348 | 384 | PRK06348, PRK06348, aspartate aminotransferase; Pr | 3e-81 | |
| PRK08960 | 387 | PRK08960, PRK08960, hypothetical protein; Provisio | 5e-76 | |
| PRK06108 | 382 | PRK06108, PRK06108, aspartate aminotransferase; Pr | 2e-75 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 5e-74 | |
| PRK05957 | 389 | PRK05957, PRK05957, aspartate aminotransferase; Pr | 1e-73 | |
| PRK07777 | 387 | PRK07777, PRK07777, aminotransferase; Validated | 5e-72 | |
| PRK07568 | 397 | PRK07568, PRK07568, aspartate aminotransferase; Pr | 1e-70 | |
| PRK07337 | 388 | PRK07337, PRK07337, aminotransferase; Validated | 8e-69 | |
| PRK08363 | 398 | PRK08363, PRK08363, alanine aminotransferase; Vali | 3e-65 | |
| PLN00175 | 413 | PLN00175, PLN00175, aminotransferase family protei | 8e-60 | |
| TIGR03540 | 383 | TIGR03540, DapC_direct, LL-diaminopimelate aminotr | 2e-57 | |
| PRK06836 | 394 | PRK06836, PRK06836, aspartate aminotransferase; Pr | 7e-56 | |
| PRK09276 | 385 | PRK09276, PRK09276, LL-diaminopimelate aminotransf | 3e-55 | |
| PRK08912 | 387 | PRK08912, PRK08912, hypothetical protein; Provisio | 2e-52 | |
| PRK09082 | 386 | PRK09082, PRK09082, methionine aminotransferase; V | 2e-50 | |
| PRK12414 | 384 | PRK12414, PRK12414, putative aminotransferase; Pro | 2e-45 | |
| COG1168 | 388 | COG1168, MalY, Bifunctional PLP-dependent enzyme w | 6e-45 | |
| PRK09265 | 404 | PRK09265, PRK09265, aminotransferase AlaT; Validat | 5e-44 | |
| PRK08068 | 389 | PRK08068, PRK08068, transaminase; Reviewed | 4e-43 | |
| TIGR01265 | 403 | TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine | 2e-42 | |
| PRK07550 | 386 | PRK07550, PRK07550, hypothetical protein; Provisio | 2e-42 | |
| COG0079 | 356 | COG0079, HisC, Histidinol-phosphate/aromatic amino | 4e-42 | |
| PRK05942 | 394 | PRK05942, PRK05942, aspartate aminotransferase; Pr | 7e-41 | |
| TIGR04350 | 384 | TIGR04350, C_S_lyase_PatB, putative C-S lyase | 1e-40 | |
| TIGR01264 | 401 | TIGR01264, tyr_amTase_E, tyrosine aminotransferase | 2e-39 | |
| PRK07681 | 399 | PRK07681, PRK07681, aspartate aminotransferase; Pr | 4e-39 | |
| COG1167 | 459 | COG1167, ARO8, Transcriptional regulators containi | 2e-38 | |
| TIGR01141 | 346 | TIGR01141, hisC, histidinol-phosphate aminotransfe | 4e-37 | |
| PRK09148 | 405 | PRK09148, PRK09148, aminotransferase; Validated | 8e-35 | |
| PRK13355 | 517 | PRK13355, PRK13355, bifunctional HTH-domain contai | 3e-34 | |
| PRK08175 | 395 | PRK08175, PRK08175, aminotransferase; Validated | 1e-33 | |
| TIGR03537 | 350 | TIGR03537, DapC, succinyldiaminopimelate transamin | 2e-33 | |
| PRK06290 | 410 | PRK06290, PRK06290, aspartate aminotransferase; Pr | 2e-32 | |
| PTZ00433 | 412 | PTZ00433, PTZ00433, tyrosine aminotransferase; Pro | 6e-32 | |
| PRK08636 | 403 | PRK08636, PRK08636, aspartate aminotransferase; Pr | 1e-31 | |
| PRK03321 | 352 | PRK03321, PRK03321, putative aminotransferase; Pro | 2e-31 | |
| PRK00950 | 361 | PRK00950, PRK00950, histidinol-phosphate aminotran | 7e-27 | |
| TIGR03538 | 393 | TIGR03538, DapC_gpp, succinyldiaminopimelate trans | 1e-26 | |
| PRK06225 | 380 | PRK06225, PRK06225, aspartate aminotransferase; Pr | 5e-26 | |
| TIGR03947 | 359 | TIGR03947, viomycin_VioD, capreomycidine synthase | 9e-26 | |
| PRK07324 | 373 | PRK07324, PRK07324, transaminase; Validated | 3e-24 | |
| PRK02731 | 367 | PRK02731, PRK02731, histidinol-phosphate aminotran | 7e-24 | |
| PLN00143 | 409 | PLN00143, PLN00143, tyrosine/nicotianamine aminotr | 9e-24 | |
| PLN00145 | 430 | PLN00145, PLN00145, tyrosine/nicotianamine aminotr | 8e-23 | |
| TIGR03542 | 402 | TIGR03542, DAPAT_plant, LL-diaminopimelate aminotr | 1e-22 | |
| PRK14807 | 351 | PRK14807, PRK14807, histidinol-phosphate aminotran | 2e-22 | |
| PRK06207 | 405 | PRK06207, PRK06207, aspartate aminotransferase; Pr | 2e-21 | |
| PRK07366 | 388 | PRK07366, PRK07366, succinyldiaminopimelate transa | 9e-21 | |
| PRK09147 | 396 | PRK09147, PRK09147, succinyldiaminopimelate transa | 1e-20 | |
| PRK03158 | 359 | PRK03158, PRK03158, histidinol-phosphate aminotran | 3e-20 | |
| PRK14809 | 357 | PRK14809, PRK14809, histidinol-phosphate aminotran | 5e-20 | |
| PLN02187 | 462 | PLN02187, PLN02187, rooty/superroot1 | 9e-20 | |
| PRK07590 | 409 | PRK07590, PRK07590, L,L-diaminopimelate aminotrans | 1e-19 | |
| PRK03967 | 337 | PRK03967, PRK03967, histidinol-phosphate aminotran | 3e-19 | |
| PLN02656 | 409 | PLN02656, PLN02656, tyrosine transaminase | 3e-19 | |
| PRK04781 | 364 | PRK04781, PRK04781, histidinol-phosphate aminotran | 1e-18 | |
| TIGR01140 | 330 | TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phospha | 1e-18 | |
| PLN03026 | 380 | PLN03026, PLN03026, histidinol-phosphate aminotran | 1e-17 | |
| PTZ00377 | 481 | PTZ00377, PTZ00377, alanine aminotransferase; Prov | 3e-17 | |
| TIGR03539 | 357 | TIGR03539, DapC_actino, succinyldiaminopimelate tr | 3e-16 | |
| PRK06855 | 433 | PRK06855, PRK06855, aminotransferase; Validated | 3e-16 | |
| PRK06358 | 354 | PRK06358, PRK06358, threonine-phosphate decarboxyl | 3e-15 | |
| PRK03317 | 368 | PRK03317, PRK03317, histidinol-phosphate aminotran | 9e-15 | |
| PLN02376 | 496 | PLN02376, PLN02376, 1-aminocyclopropane-1-carboxyl | 2e-14 | |
| PLN02607 | 447 | PLN02607, PLN02607, 1-aminocyclopropane-1-carboxyl | 4e-14 | |
| PRK05166 | 371 | PRK05166, PRK05166, histidinol-phosphate aminotran | 1e-13 | |
| PRK07865 | 364 | PRK07865, PRK07865, N-succinyldiaminopimelate amin | 4e-13 | |
| PRK01688 | 351 | PRK01688, PRK01688, histidinol-phosphate aminotran | 5e-13 | |
| PRK04870 | 356 | PRK04870, PRK04870, histidinol-phosphate aminotran | 1e-12 | |
| PRK02610 | 374 | PRK02610, PRK02610, histidinol-phosphate aminotran | 2e-12 | |
| PRK09275 | 527 | PRK09275, PRK09275, aspartate aminotransferase; Pr | 3e-12 | |
| PRK05839 | 374 | PRK05839, PRK05839, hypothetical protein; Provisio | 6e-12 | |
| TIGR03801 | 521 | TIGR03801, asp_4_decarbox, aspartate 4-decarboxyla | 1e-11 | |
| PRK01533 | 366 | PRK01533, PRK01533, histidinol-phosphate aminotran | 1e-11 | |
| PRK09105 | 370 | PRK09105, PRK09105, putative aminotransferase; Pro | 6e-11 | |
| PRK04635 | 354 | PRK04635, PRK04635, histidinol-phosphate aminotran | 7e-11 | |
| PLN02231 | 534 | PLN02231, PLN02231, alanine transaminase | 1e-10 | |
| PRK08153 | 369 | PRK08153, PRK08153, histidinol-phosphate aminotran | 1e-09 | |
| PRK08354 | 311 | PRK08354, PRK08354, putative aminotransferase; Pro | 2e-08 | |
| PRK14808 | 335 | PRK14808, PRK14808, histidinol-phosphate aminotran | 6e-08 | |
| PRK07392 | 360 | PRK07392, PRK07392, threonine-phosphate decarboxyl | 1e-07 | |
| PLN02368 | 407 | PLN02368, PLN02368, alanine transaminase | 1e-07 | |
| PRK08637 | 388 | PRK08637, PRK08637, hypothetical protein; Provisio | 3e-07 | |
| PRK05387 | 353 | PRK05387, PRK05387, histidinol-phosphate aminotran | 8e-07 | |
| PLN02672 | 1082 | PLN02672, PLN02672, methionine S-methyltransferase | 2e-06 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 2e-06 | |
| PRK07324 | 373 | PRK07324, PRK07324, transaminase; Validated | 4e-06 | |
| PRK08056 | 356 | PRK08056, PRK08056, threonine-phosphate decarboxyl | 1e-05 | |
| cd00616 | 352 | cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid s | 2e-05 | |
| PRK09440 | 416 | PRK09440, avtA, valine--pyruvate transaminase; Pro | 5e-05 | |
| PLN02450 | 468 | PLN02450, PLN02450, 1-aminocyclopropane-1-carboxyl | 1e-04 | |
| COG0520 | 405 | COG0520, csdA, Selenocysteine lyase/Cysteine desul | 2e-04 | |
| COG3977 | 417 | COG3977, COG3977, Alanine-alpha-ketoisovalerate (o | 3e-04 | |
| PRK06425 | 332 | PRK06425, PRK06425, histidinol-phosphate aminotran | 3e-04 | |
| pfam01041 | 362 | pfam01041, DegT_DnrJ_EryC1, DegT/DnrJ/EryC1/StrS a | 4e-04 | |
| PRK15481 | 431 | PRK15481, PRK15481, transcriptional regulatory pro | 5e-04 | |
| PRK07908 | 349 | PRK07908, PRK07908, hypothetical protein; Provisio | 6e-04 | |
| COG0399 | 374 | COG0399, WecE, Predicted pyridoxal phosphate-depen | 7e-04 | |
| pfam00266 | 370 | pfam00266, Aminotran_5, Aminotransferase class-V | 0.001 | |
| cd00615 | 294 | cd00615, Orn_deC_like, Ornithine decarboxylase fam | 0.001 | |
| COG1982 | 557 | COG1982, LdcC, Arginine/lysine/ornithine decarboxy | 0.002 | |
| PRK11658 | 379 | PRK11658, PRK11658, UDP-4-amino-4-deoxy-L-arabinos | 0.003 | |
| pfam01276 | 417 | pfam01276, OKR_DC_1, Orn/Lys/Arg decarboxylase, ma | 0.004 |
| >gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 533 bits (1376), Expect = 0.0
Identities = 200/401 (49%), Positives = 263/401 (65%), Gaps = 13/401 (3%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
LS RV+ V PS T+A+T +A L G VI L AGEPDFDTP I EA I A+ +G T+
Sbjct: 4 LSKRVSRVTPSATLAVTAKAKELKAQGRDVISLGAGEPDFDTPEHIKEAAIEALDDGKTK 63
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YTP AG ELR AI KLK +NGL Y P Q++V+ GAKQ++ A +A+ PGDEVIIPAP
Sbjct: 64 YTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAP 123
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+WVSYPEM ++A PV +PT F L + LE+ +T K++ LIL SPSNPTG+VY
Sbjct: 124 YWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNSPSNPTGAVYSP 183
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 306
L+ IA + +H + VLSDEIYE ++Y A TS ASL P + +RT+TVNGFSKA+AM
Sbjct: 184 EELEAIADVAVEHD-IWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAM 242
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG-EVVSKMVKAFR 365
TGWRLGY AGPK + A +K+QS TS +SI+Q A VAAL G + V +M +AF
Sbjct: 243 TGWRLGYAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAAL----NGPQDEVEEMRQAFE 298
Query: 366 ERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 425
ERRD +V E+ G++ +P+GAFY+F + S G I +S LL++A
Sbjct: 299 ERRDLMVDGLNEIPGLECPKPEGAFYVFPNVSKLLG------KSITDSLEFAEALLEEAG 352
Query: 426 VALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 466
VA+VPG AFG +R+SYA SL L+ +ERI++ L +L+
Sbjct: 353 VAVVPGIAFGAPGYVRLSYATSLEDLEEGLERIERFLESLK 393
|
Length = 393 |
| >gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 424 bits (1093), Expect = e-147
Identities = 168/406 (41%), Positives = 243/406 (59%), Gaps = 22/406 (5%)
Query: 70 PRVNAVKPSKTVAITDQATALAQAG--VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
R+ V PS T A+ +A A A+ VI L+ GEPDF TP I EA I A+ EG T
Sbjct: 1 SRLLKVLPSYTFAVLAEAKAAAELKGKEDVIDLSIGEPDFPTPEHIIEAAIEALEEGGTH 60
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQ-ILVSNGAKQSILQAVLAVCSPGDEVIIPA 186
YTP+AG ELR AI K K GL P++ I+V+ GAK+++ A LA+ +PGDEV+IP
Sbjct: 61 YTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPD 120
Query: 187 PFWVSYPEMARIADATPVILPTRISEN-FLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245
P + SY ++A PV +P EN F D + LE+ +T K++ +IL SP+NPTG+VY
Sbjct: 121 PGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVY 180
Query: 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305
K L I + +H ++++SDEIYE ++Y A H S L G +RT+T+N FSK +
Sbjct: 181 SKEELKAIVELAREH-DIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYG 239
Query: 306 MTGWRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364
MTGWR+G++ GP + +AA K++S TS A + +Q A +AAL G EVV +M + +
Sbjct: 240 MTGWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALN-GPQSDEVVEEMREEY 298
Query: 365 RERRDFLVKSFGELEGVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 423
RERRD LV++ E+ G+ + P+GAFYLF ++ +SE + LL++
Sbjct: 299 RERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIP-----------ELLDSEEFAKKLLEE 347
Query: 424 AQVALVPGDAFGD---DTCIRISYAASLTTLQAAVERIKKGLLTLR 466
A VA+VPG FG+ + +R+S A S TL+ A+ R+ + L R
Sbjct: 348 AGVAVVPGSGFGEPPGEGYVRLSLATSEETLEEALRRLARFLAEYR 393
|
Length = 393 |
| >gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 387 bits (995), Expect = e-132
Identities = 174/398 (43%), Positives = 241/398 (60%), Gaps = 6/398 (1%)
Query: 71 RVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP 130
RV+ +KPS + A +A L AG S++ L GEPDFDTP I +A + AI G T+YT
Sbjct: 9 RVSRIKPSPSTAAAARARELRAAGRSIVDLTVGEPDFDTPDHIKQAAVAAIERGETKYTL 68
Query: 131 NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWV 190
GT LR AI KL+ NGL Y ++I V GAKQ+I A++A GDEVIIPAP+WV
Sbjct: 69 VNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWV 128
Query: 191 SYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLL 250
SYP+M D TPVI+ + F L P+ LE+ +T ++R LIL +PSNPTG+VY + L
Sbjct: 129 SYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNAPSNPTGAVYSRAEL 188
Query: 251 DEIARIVAKHPRLLVLSDEIYEHIIY--APATHTSFASLPGMWERTLTVNGFSKAFAMTG 308
+A ++ +HP +LVL+D+IY+HI + P H A+ P + +R L NG SK +AMTG
Sbjct: 189 RALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHL-LAAAPELRDRVLVTNGVSKTYAMTG 247
Query: 309 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 368
WR+GY AGP +AA NK+QSQ +S SSISQ A AAL V++ V +++RR
Sbjct: 248 WRIGYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALN---GDQSFVTESVAVYKQRR 304
Query: 369 DFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL 428
D+ + + G+ P GAFYL+++ + G +E + + YLLD A VA+
Sbjct: 305 DYALALLNAIPGLSCLVPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAV 364
Query: 429 VPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 466
V G A+G R+S A SL TL+ A RI++ + LR
Sbjct: 365 VQGTAYGLSPYFRLSIATSLETLEEACARIERAVAALR 402
|
Length = 402 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 326 bits (839), Expect = e-109
Identities = 126/367 (34%), Positives = 200/367 (54%), Gaps = 21/367 (5%)
Query: 98 IRLAAGEPDFDTPVLIAEAGI-NAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD 156
I L+ GEPDF P + EA A+R G Y P+ G ELR AI L G+ P+
Sbjct: 1 IDLSIGEPDFPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPE 60
Query: 157 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 216
+I+V+NGA++++ + A+ +PGDEV++P P + Y AR+A A V +P FLL
Sbjct: 61 EIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLL 120
Query: 217 DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 276
D ++LE+ T K++LL L +P+NPTG+V + L+E+A + KH +L++SDE Y ++Y
Sbjct: 121 DLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKH-GILIISDEAYAELVY 179
Query: 277 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAACNKIQSQFTSGA 335
+L +ER + + FSK F + G R+GY+ P + K+ TSG
Sbjct: 180 DGEPP-PALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSGP 238
Query: 336 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFID 395
S++SQ A AAL G E + ++ + +R RRD L+++ EL + + +P G F+L++D
Sbjct: 239 STLSQAAAAAALD---DGEEHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLD 295
Query: 396 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--DDTCIRISYAASLTTLQA 453
+ E LL +A V + PG AFG + +R+S+A L+
Sbjct: 296 LPEG------------DDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATPEEELEE 343
Query: 454 AVERIKK 460
A+ER+ +
Sbjct: 344 ALERLAE 350
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 323 bits (830), Expect = e-107
Identities = 168/392 (42%), Positives = 238/392 (60%), Gaps = 23/392 (5%)
Query: 72 VNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPN 131
V +++PS D A + VI L GEPDF TP + EA I ++ +G+T YT N
Sbjct: 1 VESLQPSGIRKFFDLAANME----GVISLGVGEPDFVTPWNVREASIRSLEQGYTSYTAN 56
Query: 132 AGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWV 190
AG LELR I LK+ +SY P+ +I+V+ GA Q++ A+ A+ +PGDEV+I P +V
Sbjct: 57 AGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFV 116
Query: 191 SYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLL 250
SY + +A PV + T + F + P +E+ +T K++ ++LCSP+NPTG+V K+ L
Sbjct: 117 SYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSEL 176
Query: 251 DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWR 310
+EIA IV KH L+VLSDEIY + Y A +TSFAS+ GM ERT+ ++GFSK FAMTGWR
Sbjct: 177 EEIAVIVEKH-DLIVLSDEIYAELTYDEA-YTSFASIKGMRERTILISGFSKGFAMTGWR 234
Query: 311 LGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 370
LG+IA P +F A KI A +++Q A + AL AG + V +M ++R+RR+F
Sbjct: 235 LGFIAAPVYFSEAMLKIHQYSMMCAPTMAQFAALEAL---RAGNDDVIRMRDSYRKRRNF 291
Query: 371 LVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 430
V SF E+ G+ P GAFY F S+ G +SE LL + +VA+VP
Sbjct: 292 FVTSFNEI-GLTCHVPGGAFYAFPSISS------TGL----SSEEFAEQLLLEEKVAVVP 340
Query: 431 GDAFGD--DTCIRISYAASLTTLQAAVERIKK 460
G FG+ + IR SYA SL LQ A++R+K+
Sbjct: 341 GSVFGESGEGFIRCSYATSLEQLQEAMKRMKR 372
|
Length = 378 |
| >gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated | Back alignment and domain information |
|---|
Score = 298 bits (764), Expect = 2e-97
Identities = 145/402 (36%), Positives = 225/402 (55%), Gaps = 24/402 (5%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
++PRV ++ S ++ + Q ++I L G+PDF TP + EA AI E +T
Sbjct: 5 INPRVKDIQISGIRQFSN----MVQNYDNLISLTIGQPDFPTPSHVKEAAKRAITENYTS 60
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPA 186
YT NAG LELR A C+ +K++ L Y+P+ +I+V+ GA ++I A + PG EVI+PA
Sbjct: 61 YTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILPA 120
Query: 187 PFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 246
P + Y + R+ A PV + TR S F L + LE+ +TEK+R ++L PSNPTG
Sbjct: 121 PIYPGYEPIIRLCGAKPVFIDTR-STGFRLTAEALENAITEKTRCVVLPYPSNPTGVTLS 179
Query: 247 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306
K L +IA ++ K + VLSDEIY ++Y HTS A P M E+T+ +NG SK+ +M
Sbjct: 180 KEELQDIADVL-KDKNIFVLSDEIYSELVYE-QPHTSIAHFPEMREKTIVINGLSKSHSM 237
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
TGWR+G++ P + K+ + ASSISQ A + AL G ++ M +++
Sbjct: 238 TGWRIGFLFAPSYLAKHILKVHQYNVTCASSISQYAALEALTAGKDDAKM---MRHQYKK 294
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
RRD++ + G+ + +P GAFYLF F +S L+++A +
Sbjct: 295 RRDYVYNRLISM-GLDVEKPTGAFYLFPSIGH--------FT--MSSFDFALDLVEEAGL 343
Query: 427 ALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLTLR 466
A+VPG AF + + +R+SYA S+ TL+ ++R++ L
Sbjct: 344 AVVPGSAFSEYGEGYVRLSYAYSIETLKEGLDRLEAFLQQKA 385
|
Length = 387 |
| >gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 278 bits (713), Expect = 8e-90
Identities = 127/369 (34%), Positives = 203/369 (55%), Gaps = 23/369 (6%)
Query: 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP- 155
+++L GEPDF TP + EA AI + YT AG LELR A +KE+ L Y P
Sbjct: 32 ILKLTLGEPDFTTPDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPE 91
Query: 156 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 215
++ILV+ GA +++ ++ A+ PGD+V++PAP + Y + + A V + T +F+
Sbjct: 92 NEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTT-ENDFV 150
Query: 216 LDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 272
L P++LE + E K + +IL P+NPTG Y + + +A ++ K+ + V+SDE+Y
Sbjct: 151 LTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYD-IFVISDEVYS 209
Query: 273 HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 332
+ Y H S A + ++T+ +NG SK+ AMTGWR+G I P F A K
Sbjct: 210 ELTYTGEPHVSIAEY--LPDQTILINGLSKSHAMTGWRIGLIFAPAEFTAQLIKSHQYLV 267
Query: 333 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYL 392
+ A++++Q A V AL G M K + +RRD++++ +L G K+ +P GAFY+
Sbjct: 268 TAATTMAQFAAVEALTNGKDDALP---MKKEYIKRRDYIIEKMTDL-GFKIIKPDGAFYI 323
Query: 393 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTT 450
F Y ++S + K VA +PG AFG + +R+SYAAS+ T
Sbjct: 324 FAKIPAGYN---------QDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAASMET 374
Query: 451 LQAAVERIK 459
++ A++R+K
Sbjct: 375 IKEAMKRLK 383
|
Length = 391 |
| >gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 274 bits (701), Expect = 6e-88
Identities = 149/400 (37%), Positives = 223/400 (55%), Gaps = 26/400 (6%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
++ R+N ++ SK + ++A+ + +VI L GEPDFDTP I EA A+ EG+T
Sbjct: 10 IAGRINLIQRSKIRELFERASKME----NVISLGIGEPDFDTPKNIKEAAKRALDEGWTH 65
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YTPNAG ELR AI K+ G+ D ++V+ GA ++ A ++ GDEVIIP P
Sbjct: 66 YTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDP 125
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+V Y E A+IA+A P+ +P R F DP L +T+++R++++ P+NPTG+ K
Sbjct: 126 AFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELITKRTRMIVINYPNNPTGATLDK 185
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH---TSFASLPGMWERTLTVNGFSKAF 304
+ IA I A+ + +LSDE YEH +Y A H +A + T+ N FSK F
Sbjct: 186 EVAKAIADI-AEDYNIYILSDEPYEHFLYEGAKHYPMIKYAP-----DNTILANSFSKTF 239
Query: 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364
AMTGWRLG++ P+ + K+ + +S Q AG+ AL + V +M K +
Sbjct: 240 AMTGWRLGFVIAPEQVIKDMIKLHAYIIGNVASFVQIAGIEAL-RSKESWKAVEEMRKEY 298
Query: 365 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 424
ERR ++K E+ +K+ EP+GAFY+F + +SE +LL+KA
Sbjct: 299 NERRKLVLKRLKEMPHIKVFEPKGAFYVFANID----------ETGMSSEDFAEWLLEKA 348
Query: 425 QVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGL 462
+V ++PG AFG + IRISYA S L A+ER++K L
Sbjct: 349 RVVVIPGTAFGKAGEGYIRISYATSKEKLIEAMERMEKAL 388
|
Length = 391 |
| >gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 256 bits (656), Expect = 3e-81
Identities = 121/374 (32%), Positives = 197/374 (52%), Gaps = 17/374 (4%)
Query: 89 ALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEE 148
LA+ +I L+ G+PD T I A ++G TRYT + G +EL I +
Sbjct: 23 TLAKKFPDIIDLSLGDPDLITDESIINAAFEDAKKGHTRYTDSGGDVELIEEIIKYYSKN 82
Query: 149 NGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPT 208
LS+ ++I+ + GA + A+ ++ PGDEVII P++ Y + + P+IL T
Sbjct: 83 YDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQIEMVGGKPIILET 142
Query: 209 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 268
+ F ++ K LE+ +T K++ +IL SP+NPTG+V+ K L+EIA+I ++ L ++SD
Sbjct: 143 YEEDGFQINVKKLEALITSKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEY-DLFIISD 201
Query: 269 EIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 328
E+Y+ + A+L GM ERT+T FSK FAMTGWR+GY+ P + + I
Sbjct: 202 EVYDGFSFY-EDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAPDYIIETAKIIN 260
Query: 329 SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG 388
A +ISQ+A + AL +V + + F++R ++ K + + + P+G
Sbjct: 261 EGICFSAPTISQRAAIYALKH---RDTIVPLIKEEFQKRLEYAYKRIESIPNLSLHPPKG 317
Query: 389 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAA 446
+ Y FI+ G +S C LL +A V ++PG AFG+ + IR++
Sbjct: 318 SIYAFINIK------KTGL----SSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACTV 367
Query: 447 SLTTLQAAVERIKK 460
+ L+ A RI+K
Sbjct: 368 GIEVLEEAFNRIEK 381
|
Length = 384 |
| >gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 243 bits (621), Expect = 5e-76
Identities = 125/399 (31%), Positives = 188/399 (47%), Gaps = 22/399 (5%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
S R ++P +A+ +A L AG VI L GEPDF T I AG A+ G TR
Sbjct: 5 YSRRSRDIEPFHVMALLARANELEAAGHDVIHLEIGEPDFTTAEPIVAAGQAALAAGHTR 64
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YT G LR AI + G+ P++ILV+ G ++L A + PG ++ P
Sbjct: 65 YTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADP 124
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+ R+ + ++P + L P ++E + ++ SP+NPTG++ +
Sbjct: 125 GYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNADTVGALVASPANPTGTLLSR 184
Query: 248 NLLDEIARIV-AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306
+ L +++ + A+ L+V DEIY + Y AS+ + + +N FSK F M
Sbjct: 185 DELAALSQALRARGGHLVV--DEIYHGLTYG----VDAASVLEVDDDAFVLNSFSKYFGM 238
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
TGWRLG++ P V K+ AS+ +Q A +A ++ F
Sbjct: 239 TGWRLGWLVAPPAAVPELEKLAQNLYISASTPAQHAALACFEP--ETLAILEARRAEFAR 296
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
RRDFL+ + EL EPQGAFYL+ D S + G ++ + CR+ L+ V
Sbjct: 297 RRDFLLPALRELGFGIAVEPQGAFYLYADISAFGG----------DAFAFCRHFLETEHV 346
Query: 427 ALVPGDAFGD---DTCIRISYAASLTTLQAAVERIKKGL 462
A PG FG +R +Y SL LQ AVERI +GL
Sbjct: 347 AFTPGLDFGRHQAGQHVRFAYTQSLPRLQEAVERIARGL 385
|
Length = 387 |
| >gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 241 bits (616), Expect = 2e-75
Identities = 129/401 (32%), Positives = 196/401 (48%), Gaps = 25/401 (6%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVS-VIRLAAGEPDFDTPVLIAEAGINAIREGFT 126
P A+ S + A A G V+ L GE D TP I +A A+ +G T
Sbjct: 1 ARPAARALPESGIREV-----ANAGRGREGVLPLWFGESDLPTPDFIRDAAAAALADGET 55
Query: 127 RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 186
YT N G ELR A+ + +G++ P++I V++ Q+++ A A+ PGDEV+
Sbjct: 56 FYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVT 115
Query: 187 PFWVSYPEMARIADATPVILPTRISEN-FLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245
P W + +I A V +P + LD L + +T ++R L + SP+NPTG
Sbjct: 116 PLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNPTGWTA 175
Query: 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP-ATHTSFASLPGMWERTLTVNGFSKAF 304
++ L I +H L +++DE+YE + YAP SF + +R + VN FSK +
Sbjct: 176 SRDDLRAILAHCRRH-GLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNW 234
Query: 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364
AMTGWRLG++ P K+ TS + Q+A VAAL G + V+++V
Sbjct: 235 AMTGWRLGWLVAPPALGQVLEKLIEYNTSCVAQFVQRAAVAALD---EGEDFVAELVARL 291
Query: 365 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 424
R RD LV + L GV++++P GA Y F G +S +L + L+D+A
Sbjct: 292 RRSRDHLVDALRALPGVEVAKPDGAMYAFF--------RIPGV---TDSLALAKRLVDEA 340
Query: 425 QVALVPGDAFGDD--TCIRISYAASLTTLQAAVERIKKGLL 463
+ L PG AFG +R +A L AVER+++ L
Sbjct: 341 GLGLAPGTAFGPGGEGFLRWCFARDPARLDEAVERLRRFLA 381
|
Length = 382 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 236 bits (605), Expect = 5e-74
Identities = 106/374 (28%), Positives = 166/374 (44%), Gaps = 31/374 (8%)
Query: 97 VIRLAAGEPDFDTPVLI----AEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLS 152
I L + E D+ L AE A Y P G ELR A+ L L
Sbjct: 3 KINLGSNEYLGDSGTLPAVAKAEKDALAGG-TRNLYGPTDGLPELREALAKFLGRSPVLK 61
Query: 153 YTP-DQILVSNGAKQSILQAV-LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI 210
++ +GA +I + L +PGD +++PAP + SY + R+A V P
Sbjct: 62 LDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLAGGEVVRYPLYS 121
Query: 211 SENFLLDPKVLESKL---TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLS 267
S +F LD LE+ L TE +++++ SP NPTG+V L+++ + +H +L+L
Sbjct: 122 SNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEH-NILLLV 180
Query: 268 DEIYEHIIYAPATHTSFASL--PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 325
DE Y ++ + +L G L V FSKAF + GWR+GYI G ++
Sbjct: 181 DEAYAGFVFGSLDAVATRALLAEGPN--LLVVGSFSKAFGLAGWRVGYILGNAAVISQLR 238
Query: 326 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385
K+ F S S+ Q A AAL + +M + +ERRD+L G+ +
Sbjct: 239 KLARPFYS--STHLQAAAAAALSDPLLVASELEEMRQRIKERRDYLRDGLEAA-GLSVLP 295
Query: 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 445
Q F+L E + +L + LL++ V + PG +FG +RI+ A
Sbjct: 296 SQAGFFLLTGLDP------------EAALALAQVLLEEVGVYVTPGSSFGGPGWLRITVA 343
Query: 446 A-SLTTLQAAVERI 458
+ L+ +E I
Sbjct: 344 GGTEEELEELLEAI 357
|
Length = 357 |
| >gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 236 bits (604), Expect = 1e-73
Identities = 113/345 (32%), Positives = 186/345 (53%), Gaps = 24/345 (6%)
Query: 127 RYTPNAGTLELRSAICHKLKEENGLSYTPDQ-ILVSNGAKQSILQAVLAVCSPGDEVIIP 185
+Y G L AI KL+++NG+ +Q I+V+ G+ + + A+LA+ PGDE+I+
Sbjct: 60 KYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAITDPGDEIILN 119
Query: 186 APFWVSYPEMA-RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 244
P++ ++ EMA +A P+++PT +N+ L P+ +E +T K+R ++ SP+NPTG V
Sbjct: 120 TPYYFNH-EMAITMAGCQPILVPT--DDNYQLQPEAIEQAITPKTRAIVTISPNNPTGVV 176
Query: 245 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 304
YP+ LL + +I A+H + +SDE YE+ Y H S S+PG T+++ SKA+
Sbjct: 177 YPEALLRAVNQICAEH-GIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAY 235
Query: 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364
WR+GY+ P H + A KIQ +SQ A + AL G + +
Sbjct: 236 GFASWRIGYMVIPIHLLEAIKKIQDTILICPPVVSQYAALGAL---QVGKSYCQQHLPEI 292
Query: 365 RERRDFLVKSFGELEGV-KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 423
+ R L+KS G+L+ + GAFY F+ +T + F L + L+ +
Sbjct: 293 AQVRQILLKSLGQLQDRCTLHPANGAFYCFLKVNT----DLNDF-------ELVKQLIRE 341
Query: 424 AQVALVPGDAFG-DDTC-IRISYAA-SLTTLQAAVERIKKGLLTL 465
+VA++PG FG + C +RI+Y A T + +ER+ +GL T+
Sbjct: 342 YRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERLVQGLKTI 386
|
Length = 389 |
| >gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 232 bits (593), Expect = 5e-72
Identities = 124/380 (32%), Positives = 190/380 (50%), Gaps = 22/380 (5%)
Query: 88 TALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147
+ALA + L G PD D P + EA AI G +Y P G ELR+AI + +
Sbjct: 18 SALA-VRTGAVNLGQGFPDEDGPPEMLEAAQEAIAGGVNQYPPGPGIPELRAAIAAQRRR 76
Query: 148 ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 206
GL Y PD ++LV+ GA ++I AVL + PGDEV++ P++ SY + +A A V +
Sbjct: 77 RYGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPV 136
Query: 207 PTRISEN-FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 265
P F LD L + +T ++R LI+ SP NPTG+V L IA + +H LLV
Sbjct: 137 PLVPDGRGFALDLDALRAAVTPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHD-LLV 195
Query: 266 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 325
++DE+YEH+++ A H A+LPGM ERT+T++ +K F +TGW++G+ GP +AA
Sbjct: 196 ITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWACGPAPLIAAVR 255
Query: 326 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385
+ T + Q A AL A V+ + + + +RD L E G ++ +
Sbjct: 256 AAKQYLTYVGGAPFQPAVAHALDHEDA---WVAALRDSLQAKRDRLAAGLAEA-GFEVHD 311
Query: 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT-----CI 440
G ++L D + F CR L ++ VA +P F D +
Sbjct: 312 SAGTYFLCADPRPLGYDDGTEF---------CRALPERVGVAAIPMSVFYDPADAWNHLV 362
Query: 441 RISYAASLTTLQAAVERIKK 460
R ++ TL A+ R++
Sbjct: 363 RFAFCKRDDTLDEAIRRLRA 382
|
Length = 387 |
| >gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 229 bits (586), Expect = 1e-70
Identities = 124/412 (30%), Positives = 209/412 (50%), Gaps = 41/412 (9%)
Query: 68 LSPRVNAVKPS---KTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG 124
+S RV + S K V D+A + G+ V L G+PD TP + EA I E
Sbjct: 3 ISKRVLNMPASPIRKLVPYADEA---KKRGIKVYHLNIGQPDIKTPEVFFEA-IKNYDEE 58
Query: 125 FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVII 184
Y+ + G ELR A K ++ G+ PD+IL++NG ++IL A++A+C PGDE+++
Sbjct: 59 VLAYSHSQGIPELREAFA-KYYKKWGIDVEPDEILITNGGSEAILFAMMAICDPGDEILV 117
Query: 185 PAPFWVSYPEMARIADATPVILPTRISENFLLDPK-VLESKLTEKSRLLILCSPSNPTGS 243
P PF+ +Y A A V + T+I E F L K +E +T K++ +++ +P NPTG
Sbjct: 118 PEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITPKTKAILISNPGNPTGV 177
Query: 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 303
VY K L+ +A I KH L ++SDE+Y +Y +TS SL G+ +R + ++ SK
Sbjct: 178 VYTKEELEMLAEIAKKH-DLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKR 236
Query: 304 FAMTGWRLGYIAGP-KHFVAACNKI-QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 361
++ G R+G + K +AA K+ Q++ + ++ Q A L ++
Sbjct: 237 YSACGARIGCLISKNKELIAAAMKLCQARLS--PPTLEQIGAAALLDT---PESYFDEVR 291
Query: 362 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL 421
+ +++RRD L + ++ GV +P+GAFY+ ++++E ++LL
Sbjct: 292 EEYKKRRDILYEELNKIPGVVCEKPKGAFYIIAKLP------------VDDAEDFAKWLL 339
Query: 422 -----DKAQVALVPGDAF------GDDTCIRISYAASLTTLQAAVERIKKGL 462
+ V + P F G + IRI+Y + L+ A+E +K+ L
Sbjct: 340 TDFNYNGETVMVAPASGFYATPGLGKNE-IRIAYVLNEEDLKRAMEILKEAL 390
|
Length = 397 |
| >gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 224 bits (572), Expect = 8e-69
Identities = 141/408 (34%), Positives = 211/408 (51%), Gaps = 40/408 (9%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
L+ RV+A++P + + +A AL +AG +I + GEPDF P + EA A+R G T+
Sbjct: 3 LAARVDAIEPFYVMELAKEAQALERAGRDIIHMGIGEPDFTAPEPVVEAAARALRRGVTQ 62
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YT G LR AI GL P++I+V+ GA ++L A LA+ GDEV++P P
Sbjct: 63 YTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDP 122
Query: 188 FWVSYP---EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTG-S 243
SYP A+ PV++P+ +E F L +E+ E++R ++L SPSNPTG S
Sbjct: 123 ---SYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGERTRGVLLASPSNPTGTS 179
Query: 244 VYPKNLLDEIARIVA--KHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 301
+ P DE+ RIV + + DEIY+ + Y A ++ + + + +T+N FS
Sbjct: 180 IAP----DELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALS----LGDDVITINSFS 231
Query: 302 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVA-----ALGLGYAGGEV 356
K F MTGWRLG++ P+ V K+ AS+++Q A +A L +
Sbjct: 232 KYFNMTGWRLGWLVVPEALVGTFEKLAQNLFICASALAQHAALACFEPDTL-------AI 284
Query: 357 VSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSES 415
+ F+ RRDF+V + L G K+ P GAFY++ D A S +
Sbjct: 285 YERRRAEFKRRRDFIVPALESL-GFKVPVMPDGAFYVYADCRGVAHPAAGD------SAA 337
Query: 416 LCRYLLDKAQVALVPGDAFGDDTC---IRISYAASLTTLQAAVERIKK 460
L + +L A V LVPG FG IR+SYA S++ L+ AV R+ K
Sbjct: 338 LTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYATSMSRLEEAVARLGK 385
|
Length = 388 |
| >gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 215 bits (549), Expect = 3e-65
Identities = 124/403 (30%), Positives = 198/403 (49%), Gaps = 31/403 (7%)
Query: 75 VKPSKTV-----AITD---QATALAQAGVSVIRLAAGEP---DFDTPVLIAEAGINAIRE 123
++ S+ AI D A L + G+ VIRL G+P DF P + EA AI+E
Sbjct: 2 IRASERAMGVEYAIRDVVLPARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCRAIKE 61
Query: 124 GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVI 183
G Y P+ G ELR AI + K +NG+ TPD + V+ +++ A+ PGDE++
Sbjct: 62 GHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEIL 121
Query: 184 IPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGS 243
IP P + Y + + PV T E + D + K+TEK++ + + +P+NPTG+
Sbjct: 122 IPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITEKTKAIAVINPNNPTGA 181
Query: 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 303
+Y K L EI I +H L V+SDEIY+ + Y H S SL + +NG SK
Sbjct: 182 LYEKKTLKEILDIAGEH-DLPVISDEIYDLMTYE-GKHVSPGSLTKD-VPVIVMNGLSKV 238
Query: 304 FAMTGWRLGYIA--GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 361
+ TGWRLGYI P+ +A + + + A AA+ + + + +
Sbjct: 239 YFATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYM 298
Query: 362 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLF--IDFSTYYGSEAEGFGKIENSESLCRY 419
K +ERRD++ K E+ G+ ++PQGAFY+F I+ G ++ +
Sbjct: 299 KKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPRIE-----------EGPWKDDKEFVLD 347
Query: 420 LLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKK 460
+L +A V V G FG+ R+ + + L+ A++R ++
Sbjct: 348 VLHEAHVLFVHGSGFGEYGAGHFRLVFLPPVEILEEAMDRFEE 390
|
Length = 398 |
| >gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Score = 201 bits (512), Expect = 8e-60
Identities = 119/371 (32%), Positives = 199/371 (53%), Gaps = 22/371 (5%)
Query: 98 IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD- 156
I L G P+FD P + EA I AIR+G +Y G EL SAI + K++ GL P+
Sbjct: 57 INLGQGFPNFDGPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEK 116
Query: 157 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 216
++ V++G ++I +L + +PGDEVI+ APF+ SY +A A + R +F +
Sbjct: 117 EVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKTVTLR-PPDFAV 175
Query: 217 DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 276
L++ T K+R +++ +P NPTG ++ + L+ IA + ++ +L +DE+Y+ + +
Sbjct: 176 PEDELKAAFTSKTRAILINTPHNPTGKMFTREELELIASLCKEN-DVLAFTDEVYDKLAF 234
Query: 277 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGAS 336
H S ASLPGM+ERT+T+N K F++TGW++G+ P H + S T +
Sbjct: 235 E-GDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATA 293
Query: 337 SISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF 396
+ Q A VAAL A ++ + + ++D LV+ E+ G K+ G +++ +D
Sbjct: 294 TPMQWAAVAAL---RAPESYYEELKRDYSAKKDILVEGLKEV-GFKVYPSSGTYFVMVDH 349
Query: 397 STYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD-----TCIRISYAASLTTL 451
+ + GF EN + C YL+++ VA +P F + +R ++ TL
Sbjct: 350 TPF------GF---ENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCKDEETL 400
Query: 452 QAAVERIKKGL 462
+AAVER+K L
Sbjct: 401 RAAVERMKTKL 411
|
Length = 413 |
| >gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 194 bits (494), Expect = 2e-57
Identities = 116/398 (29%), Positives = 185/398 (46%), Gaps = 22/398 (5%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQA-GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT 126
L+ R+ + P I D+ A +A GV VI L G+PD TP I EA A
Sbjct: 2 LADRIENLPPYLFAEI-DKKKAEKKAEGVDVISLGIGDPDLPTPKHIVEALCKAAENPEN 60
Query: 127 -RYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVII 184
RY G L R A+ K G+ P+ ++L G+K+ I LA +PGD V++
Sbjct: 61 HRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLV 120
Query: 185 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 244
P P + Y A P +P + FL D + + +K++L+ + P+NPTG+V
Sbjct: 121 PDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYPNNPTGAV 180
Query: 245 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 304
P E+ ++ ++V D Y I + SF + G + + + SK +
Sbjct: 181 APLKFFKELVEFAKEY-NIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTY 239
Query: 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364
MTGWR+G G +A K+++ SG Q A +AAL +VV ++ K +
Sbjct: 240 NMTGWRIGMAVGNADLIAGLGKVKTNVDSGVFQAIQYAAIAALNG---PQDVVKEIRKIY 296
Query: 365 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 424
+ RRD L+++ ++ G+ + +P+ FY+++ EG+ S LL++
Sbjct: 297 QRRRDLLLEALKKI-GIDVEKPKATFYVWV-------PVPEGY----TSAEFAARLLEET 344
Query: 425 QVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKK 460
V + PG FG+ + IRIS L+ AV RIKK
Sbjct: 345 GVVVTPGVGFGEYGEGYIRISLTVPDERLEEAVARIKK 382
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia and the clade containing the Chlamydia gene is a neighboring one in the same pfam00155 superfamily so it seems quite reasonable that these enzymes catalyze the same transformation. Length = 383 |
| >gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 190 bits (485), Expect = 7e-56
Identities = 111/381 (29%), Positives = 170/381 (44%), Gaps = 57/381 (14%)
Query: 103 GEPDFDTPVLIAEAGINAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQIL 159
G P P + EA E G Y PNAG E+R AI L G T D I+
Sbjct: 41 GNPSVPPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIV 100
Query: 160 VSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPK 219
++ GA ++ A+ A+ +PGDEVI+ AP++V Y V++PT ++ F D
Sbjct: 101 MTCGAAGALNVALKAILNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTD-TDTFQPDLD 159
Query: 220 VLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK------HPRLLVLSDEIYEH 273
LE+ +T K++ +I+ SP+NPTG VY + L +A ++ + P + ++SDE Y
Sbjct: 160 ALEAAITPKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRP-IYLISDEPYRE 218
Query: 274 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA------GPKHFVAACNKI 327
I+Y A + ++ ++ V FSK+ ++ G R+GYIA VAA
Sbjct: 219 IVYDGAE---VPYIFKYYDNSIVVYSFSKSLSLPGERIGYIAVNPEMEDADDLVAALV-- 273
Query: 328 QSQFTSG------ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 381
F + A ++ Q+ L V V ++ RD L EL G
Sbjct: 274 ---FANRILGFVNAPALMQRVVAKCL------DATVD--VSIYKRNRDLLYDGLTEL-GF 321
Query: 382 KMSEPQGAFYLFIDFSTYYGSEAEGFGK--IENSESLCRYLLDKAQVALVPGDAFGDDTC 439
+ +PQGAFYLF K E+ + C K + LVPG FG
Sbjct: 322 ECVKPQGAFYLFP--------------KSPEEDDVAFCE-KAKKHNLLLVPGSGFGCPGY 366
Query: 440 IRISYAASLTTLQAAVERIKK 460
R+SY T++ ++ +K
Sbjct: 367 FRLSYCVDTETIERSLPAFEK 387
|
Length = 394 |
| >gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 3e-55
Identities = 122/398 (30%), Positives = 191/398 (47%), Gaps = 22/398 (5%)
Query: 68 LSPRVNAVKPSKTVAITDQATA-LAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT 126
L+ R+ + P I D+ A GV VI L G+PD TP I EA A+ +
Sbjct: 4 LADRIKNLPPYLFAEI-DKKKAEKIARGVDVISLGIGDPDLPTPDHIIEAMCKAVEDPEN 62
Query: 127 -RYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVII 184
+Y G LE R A+ K G+ P+ +++ G+K+ I LA +PGD V++
Sbjct: 63 HQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFVNPGDVVLV 122
Query: 185 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 244
P P + Y A P +P + FL D + + +K++L+ + P+NPTG+V
Sbjct: 123 PDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFINYPNNPTGAV 182
Query: 245 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 304
+E+ K+ ++V D Y I Y SF +PG + + + SK +
Sbjct: 183 ADLEFFEEVVDFAKKY-DIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTY 241
Query: 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364
MTGWR+G+ G +A K++S SG Q+AG+AAL EVV ++ K +
Sbjct: 242 NMTGWRIGFAVGNADLIAGLGKVKSNVDSGVFQAIQEAGIAALNG---PQEVVEELRKIY 298
Query: 365 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 424
+ERRD LV+ +L G+++ P+ FY++ +G+ S LLDKA
Sbjct: 299 QERRDILVEGLRKL-GLEVEPPKATFYVWAPVP-------KGY----TSAEFATLLLDKA 346
Query: 425 QVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKK 460
V + PG+ FG+ + RI+ ++ AVERIKK
Sbjct: 347 GVVVTPGNGFGEYGEGYFRIALTVPDERIEEAVERIKK 384
|
Length = 385 |
| >gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 180 bits (460), Expect = 2e-52
Identities = 107/394 (27%), Positives = 187/394 (47%), Gaps = 20/394 (5%)
Query: 70 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYT 129
N V I + + LA+ I L G PD P + A +A+ +G +Y
Sbjct: 2 KMGNPVFADLPTTIFEVMSQLAREH-GAINLGQGFPDDPGPEDVRRAAADALLDGSNQYP 60
Query: 130 PNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPF 188
P G ELR A+ GL P+ +++V++GA +++ A+LA+ PGDEV++ P
Sbjct: 61 PMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPL 120
Query: 189 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKN 248
+ +Y + R A P ++ ++ L L + + +++ ++L +P NP G V+P+
Sbjct: 121 YDAYLPLIRRAGGVPRLVRLE-PPHWRLPRAALAAAFSPRTKAVLLNNPLNPAGKVFPRE 179
Query: 249 LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 308
L +A +H + + DE++EH+++ H +LPGM ERT+ + K F++TG
Sbjct: 180 ELALLAEFCQRH-DAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTG 238
Query: 309 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 368
W++G++ + K QF + + + +A V A GLG M R
Sbjct: 239 WKVGFVCAAPPLLRVLAKAH-QFLTFTTPPNLQAAV-AYGLGKPDD-YFEGMRADLARSR 295
Query: 369 DFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL 428
D L + G + QG ++L +D + G E+ + CR L+++A VA
Sbjct: 296 DRLAAGLRRI-GFPVLPSQGTYFLTVDLA--------PLGLAEDDVAFCRRLVEEAGVAA 346
Query: 429 VPGDAFGDD----TCIRISYAASLTTLQAAVERI 458
+P AF ++ + +R +A TL AVER+
Sbjct: 347 IPVSAFYEEDPVTSVVRFCFAKRDATLDEAVERL 380
|
Length = 387 |
| >gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 175 bits (447), Expect = 2e-50
Identities = 112/402 (27%), Positives = 183/402 (45%), Gaps = 47/402 (11%)
Query: 77 PSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLE 136
P+ I +ALA I L+ G PDFD P + EA A+ G +Y P G
Sbjct: 13 PNVGTTIFTVMSALAAE-HGAINLSQGFPDFDGPPYLVEALAYAMAAGHNQYPPMTGVAA 71
Query: 137 LRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM 195
LR AI K G Y D +I V+ GA +++ A+LA+ PGDEVI+ P + SY
Sbjct: 72 LREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYAPA 131
Query: 196 ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR 255
+A V + + +F +D + + ++ ++RL+IL +P NP+G+V+ + + +
Sbjct: 132 IELAGGRAVRVALQ-PPDFRVDWQRFAAAISPRTRLIILNTPHNPSGTVWSAADMRALWQ 190
Query: 256 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 315
++A + VLSDE+YEHI++ A H S P + ER V+ F K + +TGW++GY
Sbjct: 191 LIAGT-DIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCV 249
Query: 316 GPKHFVAACNKIQSQFTSGASSISQKAGVAA---------LGLGYAGGEVVSKMVKAF-R 365
P A K+ Q+ + + + +A L L AF +
Sbjct: 250 APAALSAEFRKVH-QYNTFTVNTPAQLALADYLRAEPEHYLELP------------AFYQ 296
Query: 366 ERRDFLVKSFGELEG--VKMSEPQGAFYLFIDFSTYYG-SEAEGFGKIENSESLCRYLLD 422
+RD + L K+ +G ++ +D+S + E C++L
Sbjct: 297 AKRDRFRAA---LANSRFKLLPCEGTYFQLVDYSAISDLDDVE----------FCQWLTR 343
Query: 423 KAQVALVPGDAF----GDDTCIRISYAASLTTLQAAVERIKK 460
+ VA +P F +R+ +A TL AA ER+ +
Sbjct: 344 EHGVAAIPLSVFYADPFPHRLVRLCFAKQEETLDAAAERLCQ 385
|
Length = 386 |
| >gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 2e-45
Identities = 110/371 (29%), Positives = 186/371 (50%), Gaps = 31/371 (8%)
Query: 98 IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD- 156
+ L+ G P+F + E A+R+G +Y P AG LR A+ K + G Y P
Sbjct: 32 LNLSQGAPNFAPDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPAS 91
Query: 157 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 216
++ V A + + A+ A+ PGDEVI P + SY + R+ ATPV + E+F +
Sbjct: 92 EVTVIASASEGLYAAISALVHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSP-EDFRV 150
Query: 217 DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 276
+ + + +T ++R++I+ +P NP+ +V+ L +A++ ++ +++LSDE+YEH+++
Sbjct: 151 NWDEVAAAITPRTRMIIVNTPHNPSATVFSAADLARLAQLT-RNTDIVILSDEVYEHVVF 209
Query: 277 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGAS 336
A H S A + ER++ V+ F K++ +TGWR+GY P + K+ A
Sbjct: 210 DGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPAELMDEIRKVHQFMVFSAD 269
Query: 337 SISQKAGVAALG--LGYAGGEVVSKMVKAFRER-RDFLVKSFGELEG--VKMSEPQGAFY 391
+ Q A AL Y G + AF +R RD L + EL G ++ +G+F+
Sbjct: 270 TPMQHAFAEALAEPASYLG-------LGAFYQRKRDLLAR---ELAGSRFELLPSEGSFF 319
Query: 392 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF---GDDT-CIRISYAAS 447
+ F F +S+ + R + D A+VA +P AF G DT IR+S++
Sbjct: 320 MLARFR--------HFSDESDSDFVLRLIRD-ARVATIPLSAFYTDGTDTGLIRLSFSKD 370
Query: 448 LTTLQAAVERI 458
TL R+
Sbjct: 371 DATLVEGARRL 381
|
Length = 384 |
| >gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 6e-45
Identities = 105/376 (27%), Positives = 173/376 (46%), Gaps = 38/376 (10%)
Query: 106 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165
DF TP I EA + G Y G+ EL +AI H K+ + P+ I+ G
Sbjct: 36 DFPTPPEIIEALRERVDHGVFGYP--YGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVV 93
Query: 166 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT-------PVILPTRISENFLLDP 218
I A+ A+ PGD V+I P YP P++ + +D
Sbjct: 94 PGISLAIRALTKPGDGVVIQTP---VYPPFYNAIKLNGRKVIENPLVED---DGRYEIDF 147
Query: 219 KVLESKL-TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 277
LE E+ +L ILC+P NPTG V+ K L +IA + +H + V+SDEI+ ++
Sbjct: 148 DALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRH-GVRVISDEIHADLVLG 206
Query: 278 PATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGY--IAGPKHFVAACNKIQSQFTSG 334
H FASL + ++T+ SK F + G + Y I+ + +++ G
Sbjct: 207 GHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHG 266
Query: 335 ASSISQKAGVAALGLGYA-GGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYL 392
S++ A AA Y G + ++++ ++ RD++ + L GVK++EPQG +
Sbjct: 267 PSALGIIATEAA----YNQGEPWLDELLEYLKDNRDYVADFLNKHLPGVKVTEPQGTYLA 322
Query: 393 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTT 450
++D + L +LL++A+VAL PG FG+ +R+++A
Sbjct: 323 WLDCREL----------GLDDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFACPRAI 372
Query: 451 LQAAVERIKKGLLTLR 466
L+ A+ER+K+ L R
Sbjct: 373 LEEALERLKRALKKRR 388
|
Length = 388 |
| >gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 5e-44
Identities = 117/411 (28%), Positives = 190/411 (46%), Gaps = 55/411 (13%)
Query: 83 ITDQATALAQAGVSVIRLAAGEP---DFDTPVLIAEAGINAIR--EGFTRYTPNAGTLEL 137
+ +A L + G +++L G P F+ P I I + +G Y+ + G
Sbjct: 21 VLKEAKRLEEEGHKILKLNIGNPAPFGFEAPDEILRDVIRNLPTAQG---YSDSKGLFSA 77
Query: 138 RSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP---E 194
R AI +++ D I + NG + I+ A+ A+ + GDEV++PAP YP
Sbjct: 78 RKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAP---DYPLWTA 134
Query: 195 MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 254
++ PV + D + SK+T +++ +++ +P+NPTG+VY K LL+EI
Sbjct: 135 AVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSKELLEEIV 194
Query: 255 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGY 313
I +H L++ +DEIY+ I+Y A H S ASL P + +T NG SKA+ + G+R+G+
Sbjct: 195 EIARQH-NLIIFADEIYDKILYDGAVHISIASLAPDLL--CVTFNGLSKAYRVAGFRVGW 251
Query: 314 --IAGPKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGYA--------GGEVVSK 359
++GPK ++ + + + A+ +Q A ALG GY GG
Sbjct: 252 MVLSGPKKHAKGYIEGLD-MLASMRLCANVPAQHAIQTALG-GYQSINELILPGGR---- 305
Query: 360 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF--IDFSTYYGSEAEGFGKIENSESLC 417
E+RD + + GV +P+GA Y F +D Y I + E
Sbjct: 306 ----LYEQRDRAWELLNAIPGVSCVKPKGALYAFPKLDPKVY---------PIHDDEQFV 352
Query: 418 RYLLDKAQVALVPGDAFG--DDTCIRISYAASLTTLQAAVERIKKGLLTLR 466
LL + +V LV G F + RI + L+ A+ RI + L R
Sbjct: 353 LDLLLQEKVLLVQGTGFNWPEPDHFRIVTLPRVDDLEEAIGRIGRFLSGYR 403
|
Length = 404 |
| >gnl|CDD|181219 PRK08068, PRK08068, transaminase; Reviewed | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 4e-43
Identities = 107/377 (28%), Positives = 175/377 (46%), Gaps = 22/377 (5%)
Query: 89 ALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKE 147
G VI L G PD TP I EA A +Y+P G L+ A K
Sbjct: 26 KKVAEGHDVINLGQGNPDQPTPEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKR 85
Query: 148 ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 206
E G++ P+ ++ + G K +++ + +PGD +++P P + Y +A A +
Sbjct: 86 EYGVTLDPETEVAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYLSGVALARAQFETM 145
Query: 207 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 266
P NFL D + ++ EK++L+ L P+NPTG+V K +E KH + V+
Sbjct: 146 PLIAENNFLPDYTKIPEEVAEKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKH-NIGVV 204
Query: 267 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 326
D Y I + SF PG + + + SK F M GWR+ + G + + A N
Sbjct: 205 HDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVGNESVIEAINL 264
Query: 327 IQSQ-FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385
+Q F S +I Q A + AL + V+++V + RR+ + + E+ G ++
Sbjct: 265 LQDHLFVSLFGAI-QDAAIEAL---LSDQSCVAELVARYESRRNAFISACREI-GWEVDA 319
Query: 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRIS 443
P+G+F+ ++ +G+ SE LL+KA VA+ PG+ FG+ + +R+
Sbjct: 320 PKGSFFAWMPV-------PKGY----TSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVG 368
Query: 444 YAASLTTLQAAVERIKK 460
L+ AVERI K
Sbjct: 369 LLTDEERLREAVERIGK 385
|
Length = 389 |
| >gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family aminotransferase | Back alignment and domain information |
|---|
Score = 154 bits (392), Expect = 2e-42
Identities = 100/378 (26%), Positives = 173/378 (45%), Gaps = 29/378 (7%)
Query: 97 VIRLAAGEP----DFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGL 151
VI L+ G+P + T EA +A+R G F Y P+ G L R A+ L +
Sbjct: 33 VIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPG 92
Query: 152 SYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR---IADATPVILPT 208
T D +++++G Q+I + A+ +PG +++P P + Y A + +LP
Sbjct: 93 KLTADDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLP- 151
Query: 209 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 268
+++ +D LES EK+ +++ +PSNP GSV+ ++ L +IA + K + +++D
Sbjct: 152 --EKDWEIDLDGLESLADEKTVAIVVINPSNPCGSVFSRDHLQKIAEVAEKL-GIPIIAD 208
Query: 269 EIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA-------GPKHFV 321
EIY H+++ A AS + L++ G SK + + GWRLG+I +
Sbjct: 209 EIYGHMVFGDAPFIPMASFASIVPV-LSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVL 267
Query: 322 AACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 381
+ Q G ++I Q A L E + + + + ++ G+
Sbjct: 268 QGLKNL-LQRILGPATIVQGALPDI--LENTPQEFFDGKISVLKSNAELCYEELKDIPGL 324
Query: 382 KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIR 441
+P+GA YL + E E F +I++ C L + V +PG AFG +R
Sbjct: 325 VCPKPEGAMYLMV------KLELELFPEIKDDVDFCEKLAREESVICLPGSAFGLPNWVR 378
Query: 442 ISYAASLTTLQAAVERIK 459
I+ + L+ A RIK
Sbjct: 379 ITITVPESMLEEACSRIK 396
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. Length = 403 |
| >gnl|CDD|181026 PRK07550, PRK07550, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (390), Expect = 2e-42
Identities = 110/400 (27%), Positives = 171/400 (42%), Gaps = 29/400 (7%)
Query: 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPV----LIAEAGINAIR 122
L+P + A+ P + A +I L+ P + P +AEA A
Sbjct: 1 PLNPLIAALFPPPIPEVRAWLAGYDGADGPLIDLSQAVPGYPPPPELLRALAEA---AAD 57
Query: 123 EGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEV 182
Y P G ELR A G + +P+Q+ +++G Q+ A++ + GDEV
Sbjct: 58 PAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAGAGDEV 117
Query: 183 IIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTG 242
I+P P++ ++ + PV LP L DP E+ +T ++R + L +P+NPTG
Sbjct: 118 ILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITPRTRAIALVTPNNPTG 177
Query: 243 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP-ATHTSFASLPGMWERTLT-VNGF 300
VYP LL E+ + +H L+L DE Y A H FA P W+ TL + F
Sbjct: 178 VVYPPELLHELYDLARRHGIALIL-DETYRDFDSGGGAPHDLFAD-PD-WDDTLVHLYSF 234
Query: 301 SKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 360
SK++A+TG R+G + +A K A I Q A A GL
Sbjct: 235 SKSYALTGHRVGAVVASPARIAEIEKFMDTVAICAPRIGQIA--VAWGLPNLADWRAGNR 292
Query: 361 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYL 420
+ R RRD F L G ++ GA++ ++ F S + R L
Sbjct: 293 AEIAR-RRDAFRAVFARLPGWEL-LASGAYFAYV---------RHPFPDRP-SREVARRL 340
Query: 421 LDKAQVALVPGDAFGDDT--CIRISYA-ASLTTLQAAVER 457
+A + +PG FG +R+++A A + + VER
Sbjct: 341 AKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELVER 380
|
Length = 386 |
| >gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 4e-42
Identities = 95/354 (26%), Positives = 159/354 (44%), Gaps = 37/354 (10%)
Query: 91 AQAGVS-VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEEN 149
Q G+ +I+L++ E + P + EA A+ + RY P+ ELR+A+
Sbjct: 17 RQYGLPGIIKLSSNENPYGPPPKVIEAIRAALDK-LNRY-PDPDYRELRAALAEYYGVV- 73
Query: 150 GLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR 209
P+ +LV NG+ + I V A PGD V+IP P + Y A++A A V +P +
Sbjct: 74 ----DPENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLK 129
Query: 210 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 269
F LD + + + +K++L+ LC+P+NPTG++ P+ L + + + L+V+ DE
Sbjct: 130 ---EFRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRALLEALPEG-GLVVI-DE 184
Query: 270 IYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS 329
Y I ++P + P T FSKAF + G R+GY +AA NK++
Sbjct: 185 AY--IEFSPESSLELLKYPPNLIVLRT---FSKAFGLAGLRVGYAIANPELIAALNKVRP 239
Query: 330 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGA 389
F SS + A +AAL + + + V+ RE R+ L + L G+ P A
Sbjct: 240 PFN--VSSPALAAAIAALRD----ADYLEESVERIREERERLYAALKAL-GLFGVFPSQA 292
Query: 390 FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 443
++ + + +L LL K + +RI+
Sbjct: 293 NFVLVRVPD------------AEAAALAEALLKKGILVRDCSSVGLLPGYLRIT 334
|
Length = 356 |
| >gnl|CDD|180317 PRK05942, PRK05942, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 7e-41
Identities = 110/398 (27%), Positives = 186/398 (46%), Gaps = 28/398 (7%)
Query: 71 RVNAVKPSKTVAITDQATALA-QAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRY 128
R+ A+ P A D+ A A + G+ +I L G PD P + EA I A+ + Y
Sbjct: 11 RLQAL-PPYVFARLDELKARAREQGLDLIDLGMGNPDGAAPQPVIEAAIAALADPQNHGY 69
Query: 129 TPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
P GT R AI G+ PD + L G+K+ + LA +PGD V++P+P
Sbjct: 70 PPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVPSP 129
Query: 188 FWVSYPEMAR---IADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 244
+YP R IA A + + ++L+D + ++ +++++L PSNPT +
Sbjct: 130 ---AYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQAKILYFNYPSNPTTAT 186
Query: 245 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 304
P+ +EI A+ ++++ D Y + + TS +PG + + + SK +
Sbjct: 187 APREFFEEIVAF-ARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTY 245
Query: 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364
M GWR+G++ G +H + +++ G S QKA AL L + ++ + +
Sbjct: 246 NMAGWRVGFVVGNRHIIQGLRTLKTNLDYGIFSALQKAAETALQL---PDSYLQQVQERY 302
Query: 365 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 424
R RRDFL++ GEL G + + YL++ G S +L K
Sbjct: 303 RTRRDFLIQGLGEL-GWNIPPTKATMYLWVPCPVGMG-----------STDFALNVLQKT 350
Query: 425 QVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKK 460
V + PG+AFG+ + +RIS A L A++R+K+
Sbjct: 351 GVVVTPGNAFGEGGEGYVRISLIADCDRLGEALDRLKQ 388
|
Length = 394 |
| >gnl|CDD|213963 TIGR04350, C_S_lyase_PatB, putative C-S lyase | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 1e-40
Identities = 98/372 (26%), Positives = 174/372 (46%), Gaps = 39/372 (10%)
Query: 106 DFDTPVLIAEAGINAIRE-------GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQI 158
DF TP A + A+++ G+T L +A+ + L + +G P+ I
Sbjct: 36 DFATP----PAVLEALKQRLEHPVFGYTLPPD-----SLYAAVINWLAQRHGWQIDPEWI 86
Query: 159 LVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN-FLLD 217
+ G S+ AV A+ +PG+ VI+ P + + + V+ P ++ + D
Sbjct: 87 VFLPGVVPSLFAAVRALTAPGEGVIVQTPVYPPFLSAVKSNGRELVLNPLKLDPGRYRFD 146
Query: 218 PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 277
+ LE +TEK+RLL+LCSP NP G V+ + L +A + +H ++V+SDEI+ ++Y
Sbjct: 147 LEDLEDAITEKARLLLLCSPHNPVGRVWTREELTRLAELCLRH-NVVVVSDEIHADLVYP 205
Query: 278 PATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGY--IAGPKHFVAACNKIQSQFTSG 334
P H ASL P + ERT+T+ K F + G + + I P+ A Q
Sbjct: 206 PNKHIPLASLSPEIAERTVTLLSPGKTFNIAGLNISFAIIPNPELRRAFQEAAQRVHIQH 265
Query: 335 ASSISQKAGVAALGLGYAGGEVVSKMVKA-FRERRDFLVKSFGE-LEGVKMSEPQGAFYL 392
+ A AA Y GE + A R RD + + + L +++ P+ +
Sbjct: 266 GNLFGYVAFEAA----YREGEPWLDALLAYLRGNRDLVEEFIAKRLPQIRVRPPEATYLA 321
Query: 393 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTC--IRISYAASLTT 450
++D +A+ L + +++A + L PG +FGD +R+++ +T
Sbjct: 322 WLDCRALGLDDAD----------LRAFFIEQAGLGLNPGISFGDGGSGFMRLNFGCPRST 371
Query: 451 LQAAVERIKKGL 462
L+ A+ER+++ L
Sbjct: 372 LEQALERLRQAL 383
|
Members of this subfamily are probable C-S lyases from a family of pyridoxal phosphate-dependent enzymes that tend to be (mis)annotated as probable aminotransferases. One member is PatB of Bacillus subtilis, a proven C-S-lyase. Another is the virulence factor cystalysin from Treponema denticola, whose hemolysin activity may stem from H2S production. Members of the seed alignment occur next to examples of the enzyme 5-histidylcysteine sulfoxide synthase, from ovothiol A biosynthesis, and would be expected to perform a C-S cleavage of 5-histidylcysteine sulfoxide to leave 1-methyl-4-mercaptohistidine (ovothiol A). Length = 384 |
| >gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 2e-39
Identities = 96/403 (23%), Positives = 166/403 (41%), Gaps = 29/403 (7%)
Query: 75 VKPS----KTV----AITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-- 124
VKPS TV AI D VI+L+ G+P + + A+++
Sbjct: 3 VKPSDHSNNTVNPIRAIVDNMKVKPNPEKPVIKLSIGDPTVFGNLPTDPEVMQAMKDSLD 62
Query: 125 ---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDE 181
+ Y P G L R AI +G D +++ +G +I + A+ + G
Sbjct: 63 SGKYNGYAPTVGALSAREAIASYYHNPDG-PIEADDVVLCSGCSHAIEMCIAALANAGQN 121
Query: 182 VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT 241
+++P P + Y +A + +++ +D K LES + EK+ L++ +PSNP
Sbjct: 122 ILVPRPGFPLYRTLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDEKTAALVVNNPSNPC 181
Query: 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 301
GSV+ + L+EI + + L +++DEIY ++++ AT ASL L+ G +
Sbjct: 182 GSVFSRQHLEEILAVAERQ-CLPIIADEIYGDMVFSGATFEPVASLSSNVPI-LSCGGLA 239
Query: 302 KAFAMTGWRLGYIAGPKHFVAACN-----KIQSQFTSGASSISQKAGVAALGLGYAGGEV 356
K + + GWRLG+I + SQ G +I Q A + L E
Sbjct: 240 KRWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQRILGPCTIVQGALPSI--LLRTPQEY 297
Query: 357 VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESL 416
+ + + G++ P GA Y+ + G E E F + +N
Sbjct: 298 FDGTLSVLESNAMLCYGALAAVPGLQPVMPSGAMYMMV------GIEMEHFPEFKNDVEF 351
Query: 417 CRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIK 459
L+ + V +PG F R+ + ++ A RI+
Sbjct: 352 TERLIAEQSVFCLPGSCFEYPGFFRVVLTVPVVMMEEACSRIQ 394
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs [Energy metabolism, Amino acids and amines]. Length = 401 |
| >gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 4e-39
Identities = 101/404 (25%), Positives = 186/404 (46%), Gaps = 27/404 (6%)
Query: 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE--- 123
+L+ R+ A + S + AG +I L+ G PD + E ++ +
Sbjct: 4 TLATRMKAFQSSIFSELGAYKKEKIAAGHKMIDLSIGNPDMPPADFVREEMVHTANQKES 63
Query: 124 -GFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDE 181
G+T +G E A+ + + D ++L+ G++ ++ + +PGD
Sbjct: 64 YGYTL----SGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYANPGDI 119
Query: 182 VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT 241
+++P P + +Y ++A AT +P + +FL D +++ ++ +K++++IL P NP
Sbjct: 120 ILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIADKAKMMILNFPGNPV 179
Query: 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 301
++ ++ E+ KH ++V+ D Y + SF S+PG E + +N S
Sbjct: 180 PAMAHEDFFKEVIAFAKKH-NIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLS 238
Query: 302 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 361
K++++ G R+GY+ G + V A + +S G QKA AAL G K
Sbjct: 239 KSYSLAGSRIGYMIGNEEIVRALTQFKSNTDYGVFLPIQKAACAAL---RNGAAFCEKNR 295
Query: 362 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL 421
++ERRD LV F G + +P G+ +++ + +G+ S S L+
Sbjct: 296 GIYQERRDTLVDGFRTF-GWNVDKPAGSMFVWAEIP-------KGW----TSLSFAYALM 343
Query: 422 DKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLL 463
D+A V + PG AFG + +RI+ LQ AVE I+ +
Sbjct: 344 DRANVVVTPGHAFGPHGEGFVRIALVQDEEVLQQAVENIRNSGI 387
|
Length = 399 |
| >gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 2e-38
Identities = 100/390 (25%), Positives = 169/390 (43%), Gaps = 47/390 (12%)
Query: 96 SVIRLAAGEPDFDTPVL--IAEAGINAIR----EGFTRYTPNAGTLELRSAICHKLKEEN 149
SVI A G PD L + A +R +Y P AG ELR AI L
Sbjct: 90 SVIDFAGGLPDPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARR 149
Query: 150 GLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM---ARIADATPVIL 206
G+S P+QI++++GA+Q++ + + PGD V++ P +YP A + +
Sbjct: 150 GISCEPEQIVITSGAQQALDLLLRLLLDPGDTVLVEDP---TYPGALQALEALGARVIPV 206
Query: 207 PTRISENFLLDPKVLESKLTEKSRLLILCSPS--NPTGSVYP----KNLLDEIARIVAKH 260
P + +DP+ LE L + + +P+ NPTG K LL +A+
Sbjct: 207 PV---DEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLA-----LAEK 258
Query: 261 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 320
+L++ D+ Y + Y +L R + + FSK A G RLGY+ P
Sbjct: 259 YDVLIIEDDYYGELRYDGPPPPPLKAL-DAPGRVIYLGSFSKTLA-PGLRLGYVVAPPEL 316
Query: 321 VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL-- 378
+ +++ G SS+SQ A A L G+ + ++ + + RRD L+++ E
Sbjct: 317 IEKLLRLKQAADLGPSSLSQAALAAFLLSGHY-DRHLRRLRREYARRRDALLEALAEYLP 375
Query: 379 EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT 438
E + P+G +L+++ EG ++ L L+K V G AF D
Sbjct: 376 ELATWTRPEGGLFLWLEL-------PEGI----DARELLAAALEKGVVVTPLGSAFSADG 424
Query: 439 ----CIRISYA-ASLTTLQAAVERIKKGLL 463
+R+S++ S ++ ++R+ L
Sbjct: 425 DPRNGLRLSFSSPSEEEIEEGIKRLAALLR 454
|
Length = 459 |
| >gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 4e-37
Identities = 92/356 (25%), Positives = 157/356 (44%), Gaps = 36/356 (10%)
Query: 88 TALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147
A G VI+L + E F P EA + A + RY P+ EL+ A+
Sbjct: 12 PARELGGKEVIKLNSNENPFGPPPKAKEA-LRAEADKLHRY-PDPDPAELKQALADYY-- 67
Query: 148 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILP 207
P+QIL+ NG+ + I + A PGD V++P P + Y A+I A V +P
Sbjct: 68 ----GVDPEQILLGNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYEISAKIHGAEVVKVP 123
Query: 208 TRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLS 267
E+ LD + + + +K +L+ LCSP+NPTG++ ++ ++ + + LV+
Sbjct: 124 LD--EDGQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIEAVLERTPE--DALVVV 179
Query: 268 DEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI 327
DE Y ++ S L + + + SKAF + G R+GY + A NK+
Sbjct: 180 DEAY--GEFSG--EPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANAEIIDALNKV 235
Query: 328 QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387
++ F S ++Q A +AAL + + K V+ R+ L +L G+++
Sbjct: 236 RAPF--NLSRLAQAAAIAAL----RDDDFIEKTVEEINAERERLYDGLKKLPGLEVYPSD 289
Query: 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 443
F + I F ++++L LL+K + G C+RI+
Sbjct: 290 ANF-VLIRFP-------------RDADALFEALLEKGIIVRDLNSYPGLPNCLRIT 331
|
Alternate names: histidinol-phosphate transaminase; imidazole acetol-phosphate transaminase Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme [Amino acid biosynthesis, Histidine family]. Length = 346 |
| >gnl|CDD|181674 PRK09148, PRK09148, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 8e-35
Identities = 113/385 (29%), Positives = 176/385 (45%), Gaps = 31/385 (8%)
Query: 89 ALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT-RYTPNAGTLELRSAICHKLKE 147
A AG +I L G PD TP I + ++ T RY+ + G LR A
Sbjct: 24 AARAAGADIIDLGMGNPDLPTPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYAR 83
Query: 148 ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA---RIADATP 203
G+ PD Q++ + G+K+ A+ +PGD ++ P P SYP A +A
Sbjct: 84 RFGVKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPNP---SYPIHAFGFIMAGGVI 140
Query: 204 VILPTRISENFL--LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV--AK 259
+P E F L+ V S K LI+ PSNPT V LD +V AK
Sbjct: 141 RSVPAEPDEEFFPALERAVRHS--IPKPIALIVNYPSNPTAYVAD---LDFYKDVVAFAK 195
Query: 260 HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH 319
+++LSD Y I + S +PG + T+ SK F+M GWR+G+ G +
Sbjct: 196 KHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVGNER 255
Query: 320 FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE 379
+AA +++S GA + Q A AAL + +++M + +++RRD LV+SFG
Sbjct: 256 LIAALTRVKSYLDYGAFTPIQVAATAALN---GPQDCIAEMRELYKKRRDVLVESFGR-A 311
Query: 380 GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--D 437
G + P + + + + G +E S + L++KA VA+ PG FG+ D
Sbjct: 312 GWDIPPPAASMFAWAPIPEAF----RHLGSLEFS----KLLVEKADVAVAPGVGFGEHGD 363
Query: 438 TCIRISYAASLTTLQAAVERIKKGL 462
+RI+ + ++ A IK+ L
Sbjct: 364 GYVRIALVENEQRIRQAARNIKRFL 388
|
Length = 405 |
| >gnl|CDD|237361 PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 3e-34
Identities = 109/403 (27%), Positives = 189/403 (46%), Gaps = 59/403 (14%)
Query: 85 DQATALAQAGVSVIRLAAGEP---DFDTP--VL--IAEAGINAIREGFTRYTPNAGTLEL 137
D+A + AG +++L G P F TP V+ +A+ + EG Y+ + G
Sbjct: 136 DEANRMEAAGTHILKLNIGNPAPFGFRTPDEVVYDMAQQLTDT--EG---YSDSKGLFSA 190
Query: 138 RSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR 197
R AI + + + D I NG + I ++ A+ GDEV+IP+P + +
Sbjct: 191 RKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTACVN 250
Query: 198 IADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV 257
+A T V + D + SK+T +++ +++ +P+NPTG++YP+ +L +I I
Sbjct: 251 LAGGTAVHYRCDEQSEWYPDIDDIRSKITSRTKAIVIINPNNPTGALYPREVLQQIVDIA 310
Query: 258 AKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGY--I 314
+H +L++ SDEIY+ ++ HTS ASL P ++ +T +G SK+ + G+R+G+ +
Sbjct: 311 REH-QLIIFSDEIYDRLVMDGLEHTSIASLAPDLF--CVTFSGLSKSHMIAGYRIGWMIL 367
Query: 315 AGPKHFVA-------------ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 361
+G K C+ + +Q SI Q ALG G+ V +V
Sbjct: 368 SGNKRIAKDYIEGLNMLANMRLCSNVPAQ------SIVQ----TALG-GHQ--SVKDYLV 414
Query: 362 KAFR--ERRDFLVKSFGELEGVKMSEPQGAFYLF--IDFSTYYGSEAEGFGKIENSESLC 417
R E+R+ + + + G+ +P+ AFY+F ID + I + E
Sbjct: 415 PGGRVYEQRELVYNALNAIPGISAVKPKAAFYIFPKIDVKKF---------NIHDDEQFA 465
Query: 418 RYLLDKAQVALVPGDAFGDDTC--IRISYAASLTTLQAAVERI 458
LL +V +V G F D R+ Y L L+ A++R+
Sbjct: 466 LDLLHDKKVLIVQGTGFNWDKPDHFRVVYLPRLEDLEDAMDRL 508
|
Length = 517 |
| >gnl|CDD|181268 PRK08175, PRK08175, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 1e-33
Identities = 105/399 (26%), Positives = 183/399 (45%), Gaps = 25/399 (6%)
Query: 70 PRVNAVKPSKTVAITDQATALAQA-GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT-R 127
R++ + P IT + A+ G +I + G PD TP I E + T
Sbjct: 4 TRIDRL-PPYVFNITAELKMAARRRGEDIIDFSMGNPDGPTPPHIVEKLCEVAQRPDTHG 62
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPA 186
Y+ + G LR AI ++ + P+ + +V+ G+K+ + +LA GD V++P
Sbjct: 63 YSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPN 122
Query: 187 PFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGS 243
P + + A IA A +P +F + LE + E K +++IL PSNPT
Sbjct: 123 PSYPIHIYGAVIAGAQVRSVPLVEGVDFFNE---LERAIRESYPKPKMMILGFPSNPTAQ 179
Query: 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 303
+++ + ++ +LV+ D Y I+Y S +PG + + SK+
Sbjct: 180 CVELEFFEKVVALAKRY-DVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKS 238
Query: 304 FAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363
+ M GWR+G++ G V+A +I+S G + Q A +AAL + V + +
Sbjct: 239 YNMAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALE---GDQQCVRDIAEQ 295
Query: 364 FRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 423
++ RRD LVK E G + P+ + Y++ Y + G +E + + LL++
Sbjct: 296 YKRRRDVLVKGLHEA-GWMVEMPKASMYVWAKIPEPYAA----MGSLEFA----KKLLNE 346
Query: 424 AQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKK 460
A+V + PG FGD DT +R + + ++ A+ IK
Sbjct: 347 AKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKA 385
|
Length = 395 |
| >gnl|CDD|163313 TIGR03537, DapC, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 2e-33
Identities = 92/362 (25%), Positives = 169/362 (46%), Gaps = 28/362 (7%)
Query: 102 AGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILV 160
G+P TP I +A I+A+ E ++Y GT LR AI + G+ PD Q+L
Sbjct: 7 TGDPKEPTPPFIRKALIDAVPE-VSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLP 65
Query: 161 SNGAKQSILQAVLAVCSPGDE---VIIPAPFWVSYPEMARIADATPVILPTRISENFLLD 217
S G+K++I L P ++ VI P + Y A A P + + + FLL
Sbjct: 66 SAGSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLR 125
Query: 218 PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 277
+ +E + E+++++ + P NPTG+ P++ L E + +H +++ SDE Y I +
Sbjct: 126 LEKVEKSILEETKIVWINYPHNPTGATAPRSYLKETIAMCREHG-IILCSDECYTEIYFG 184
Query: 278 PATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASS 337
H+ +L E L + SK MTG+R G++AG + ++ K+++ F +
Sbjct: 185 EPPHS---ALEVGIENVLAFHSLSKRSGMTGYRSGFVAGDEKLISFLRKLRANFGVASPD 241
Query: 338 ISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS 397
Q A AA ++ V + K F+ +RD ++ F + G++ P FYL++
Sbjct: 242 FVQAAAKAA----WSDDNHVLERRKIFKRKRDLFIEFFNK-VGLEYLYPDATFYLWVKVP 296
Query: 398 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF--GDDTCIRISYAASLTTLQAAV 455
+ +++ LL+ + + PG+ F G++ +R++ +L + A+
Sbjct: 297 SGI-----------DAKDYALRLLE-NGIVVAPGENFGSGEEGYVRVALVPTLEECEEAL 344
Query: 456 ER 457
Sbjct: 345 RL 346
|
The four sequences which make up the seed for this model are not closely related, although they are all members of the pfam00155 family of aminotransferases and are more closely related to each other than to anything else. Additionally, all of them are found in the vicinity of genes involved in the biosynthesis of lysine via the diaminopimelate pathway (GenProp0125), although this amount to a separation of 12 genes in the case of Sulfurihydrogenibium azorense Az-Fu1. None of these genomes contain another strong candidate for this role in the pathway. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. Length = 350 |
| >gnl|CDD|235772 PRK06290, PRK06290, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 2e-32
Identities = 105/353 (29%), Positives = 161/353 (45%), Gaps = 33/353 (9%)
Query: 95 VSVIRLAAGEPDF--DTPV---LIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEEN 149
+ +I + GEPD D V L EA R Y N G E + A +++
Sbjct: 44 MELIDMGVGEPDEMADESVVEVLCEEAKKPENRG----YADN-GIQEFKEAAARYMEKVF 98
Query: 150 GL-SYTPD-QILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIA---DAT 202
G+ P +++ S G+K ++ A+L C +PGD ++ P YP
Sbjct: 99 GVKDIDPVTEVIHSIGSKPAL--AMLPSCFINPGDVTLMTVP---GYPVTGTHTKYYGGE 153
Query: 203 PVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 262
LP NFL D + + EK++LL L P+NPTG+V K +E+ AK
Sbjct: 154 VYNLPLLEENNFLPDLDSIPKDIKEKAKLLYLNYPNNPTGAVATKEFYEEVVDF-AKENN 212
Query: 263 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA 322
++V+ D Y + + SF S+PG E + ++ SKA+ MTGWRL ++ G + V
Sbjct: 213 IIVVQDAAYAALTFD-GKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVGNELIVK 271
Query: 323 ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 382
A ++ SG QKAG+ AL E+ K+ + + R D LVK E+ G K
Sbjct: 272 AFATVKDNNDSGQFIAIQKAGIYAL----DHPEITEKIREKYSRRLDKLVKILNEV-GFK 326
Query: 383 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 435
P G FYL++ + K EN+E +YL+ + ++ VP D G
Sbjct: 327 AEMPGGTFYLYVKAPK----GTKSGIKFENAEEFSQYLIKEKLISTVPWDDAG 375
|
Length = 410 |
| >gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (317), Expect = 6e-32
Identities = 106/414 (25%), Positives = 187/414 (45%), Gaps = 34/414 (8%)
Query: 65 DVSLSPRV-NAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFD----TPVLIAEAGIN 119
DVS+S P +T +TD A + + S+I+L+ G+P D TP + +A +
Sbjct: 5 DVSMSKHAGRVFNPLRT--VTDNAKP-SPSPKSIIKLSVGDPTLDGNLLTPAIQTKALVE 61
Query: 120 AIREG-FTRYTPNAGTLELRSAI--------CHKLKEENGLSYTPDQILVSNGAKQSILQ 170
A+ Y P G+ E R A+ HK ++ + D +++ +G +IL
Sbjct: 62 AVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKK--DNVVLCSGVSHAILM 119
Query: 171 AVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSR 230
A+ A+C GD +++PAP + Y + + R +++ D + + ++++
Sbjct: 120 ALTALCDEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDDRTK 179
Query: 231 LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 290
LI+ +PSNP GS + + +++I R + + RL ++SDEIY +++ AT TS A
Sbjct: 180 ALIMTNPSNPCGSNFSRKHVEDIIR-LCEELRLPLISDEIYAGMVFNGATFTSVADFDTT 238
Query: 291 WERTLTVNGFSKAFAMTGWRLGY-IAGPKHFVAA----CNKIQSQFTSGASSISQKAGVA 345
R + + G +K + GWRLG+ + H K G S+ Q A
Sbjct: 239 VPR-VILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGMLVCGPCSVVQAALGE 297
Query: 346 ALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAE 405
A L E + ++V E L GE G+ + P+G+ +L
Sbjct: 298 A--LLNTPQEHLEQIVAKLEEGAMVLYNHIGECIGLSPTMPRGSMFLMSRLDLEK----- 350
Query: 406 GFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIK 459
F I++ LL++ V ++PG+ F R++ + + L+ AVERIK
Sbjct: 351 -FRDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTISRPVEVLREAVERIK 403
|
Length = 412 |
| >gnl|CDD|236316 PRK08636, PRK08636, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 1e-31
Identities = 106/395 (26%), Positives = 188/395 (47%), Gaps = 30/395 (7%)
Query: 82 AITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT-RYTPNAGTLELRSA 140
+ + A +AG +I + G PD TP I + + ++ T Y+ + G +LR A
Sbjct: 20 EVNELKMAARRAGEDIIDFSMGNPDGPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLA 79
Query: 141 ICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR-- 197
IC+ K + + P+ +++ + G+K+ + V A+ +PGD I+P P +YP ++
Sbjct: 80 ICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPDP---AYPIHSQAF 136
Query: 198 -IADATPVILPTRISENFLLDP----KVLESKLTE---KSRLLILCSPSNPTGSVYPKNL 249
+A +P +E+F LD + LE L E K + +++ P NPT + K+
Sbjct: 137 ILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSF 196
Query: 250 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGW 309
+ + + AK R ++SD Y I + S + G + + SK++ M GW
Sbjct: 197 YERLVAL-AKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGW 255
Query: 310 RLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRD 369
R+G++ G K V A KI+S G + Q A AL V ++ + +R+RRD
Sbjct: 256 RVGFVVGNKKLVGALKKIKSWLDYGMFTPIQVAATIALD---GDQSCVEEIRETYRKRRD 312
Query: 370 FLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV 429
L++SF G ++ +P+ + +++ G +E S + LL +A+VA+
Sbjct: 313 VLIESFAN-AGWELQKPRASMFVWAKIPEPARH----LGSLEFS----KQLLTEAKVAVS 363
Query: 430 PGDAFGD--DTCIRISYAASLTTLQAAVERIKKGL 462
PG FG+ D +RI+ + ++ A IKK L
Sbjct: 364 PGIGFGEYGDEYVRIALIENENRIRQAARNIKKFL 398
|
Length = 403 |
| >gnl|CDD|179559 PRK03321, PRK03321, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 2e-31
Identities = 91/306 (29%), Positives = 139/306 (45%), Gaps = 46/306 (15%)
Query: 98 IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQ 157
I+L++ E F P+ A I G RY P+ G +ELR+A+ L P+
Sbjct: 25 IKLSSNETPFG-PLPSVRAAIARAAAGVNRY-PDMGAVELRAALAEHL------GVPPEH 76
Query: 158 ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS---YPEMARIADATPVILPTRISENF 214
+ V G+ Q V A PGDEVI W S YP + ++A ATPV +P
Sbjct: 77 VAVGCGSVALCQQLVQATAGPGDEVIFA---WRSFEAYPILVQVAGATPVQVPLTPDHTH 133
Query: 215 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR-LLVLSDEIYEH 273
LD + + +T+++RL+ +C+P+NPTG+V E+AR + P +LV+ DE Y
Sbjct: 134 DLD--AMAAAITDRTRLIFVCNPNNPTGTVVTP---AELARFLDAVPADVLVVLDEAYVE 188
Query: 274 IIYAPAT---------HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC 324
+ H + L RT FSKA+ + G R+GY G +AA
Sbjct: 189 YVRDDDVPDGLELVRDHPNVVVL-----RT-----FSKAYGLAGLRVGYAVGHPEVIAAL 238
Query: 325 NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384
K+ F +S++Q A +A+L A E++ + V A RD + + G +
Sbjct: 239 RKVAVPF--SVNSLAQAAAIASLA---AEDELLER-VDAVVAERDRVRAALRA-AGWTVP 291
Query: 385 EPQGAF 390
Q F
Sbjct: 292 PSQANF 297
|
Length = 352 |
| >gnl|CDD|234872 PRK00950, PRK00950, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 7e-27
Identities = 79/311 (25%), Positives = 140/311 (45%), Gaps = 33/311 (10%)
Query: 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP 155
S+I+L + E EA + RY P ELR A+
Sbjct: 35 SIIKLGSNENPLGPSPKAVEAIEKEL-SKIHRY-PEPDAPELREAL------SKYTGVPV 86
Query: 156 DQILVS-NGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENF 214
+ I+V +G + I + PGDEVIIP P + Y A+ A PV + E+F
Sbjct: 87 ENIIVGGDGMDEVIDTLMRTFIDPGDEVIIPTPTFSYYEISAKAHGAKPVYA--KREEDF 144
Query: 215 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 274
LD + + +TEK++++ LC+P+NPTG++ P+ ++I +I+ L+ + DE Y +
Sbjct: 145 SLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPE---EDIRKILESTDALVFV-DEAY--V 198
Query: 275 IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 334
+A +T A ++ + FSK F + G R+GY P+ + + ++ F+
Sbjct: 199 EFAEYDYTPLA---LEYDNLIIGRTFSKVFGLAGLRIGYGFVPEWLIDYYMRAKTPFS-- 253
Query: 335 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLF 393
+ +SQ A +AAL + E + K ++ + R++L + P A ++
Sbjct: 254 LTRLSQAAAIAAL----SDKEYIEKSIEHGIKSREYL------YNELPFKVYPSEANFVL 303
Query: 394 IDFSTYYGSEA 404
+D + E
Sbjct: 304 VDVTPMTAKEF 314
|
Length = 361 |
| >gnl|CDD|234249 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 1e-26
Identities = 99/395 (25%), Positives = 166/395 (42%), Gaps = 44/395 (11%)
Query: 87 ATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLK 146
A A I L+ GEP TP + EA + G + Y G ELR AI L+
Sbjct: 20 AGVTPPASKPPIALSIGEPKHPTPAFVLEALRENL-HGLSTYPTTKGLPELRQAIARWLE 78
Query: 147 EENGLSYTPD---QILVSNGAKQSILQAVLAVCSPGDE--VIIPAPFWVSYPEMARIADA 201
L D +L NG ++++ AV +PG V++P PF+ Y A +A A
Sbjct: 79 RRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGA 138
Query: 202 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 261
P L FL D + + + +LL +CSP NPTG+V LD + +++
Sbjct: 139 EPYFLNCTAENGFLPDFDAVPESVWRRCQLLFVCSPGNPTGAVLS---LDTLKKLIELAD 195
Query: 262 R--LLVLSDEIYEHIIY----APATHTSFASLPGM--WERTLTVNGFSKAFAMTGWRLGY 313
+ ++ SDE Y + + PA A+ G + R L + SK + G R G+
Sbjct: 196 QYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGF 255
Query: 314 IAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 373
+AG + A + ++ +Q A +AA + + V + +RE+ +++
Sbjct: 256 VAGDAEILKAFLRYRTYHGCAMPIPTQLASIAA----WNDEQHVRENRALYREKFAAVLE 311
Query: 374 SFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 433
G++ +++ P FYL+ + G + E+ R L ++ V ++PG
Sbjct: 312 ILGQVLDLEL--PDAGFYLWP--------KVPG-----DDEAFARALYEEENVTVLPGRF 356
Query: 434 FGDDT--------CIRISYAASLTTLQAAVERIKK 460
+ +RI+ A L A ERI+
Sbjct: 357 LAREAEGVNPGEGRVRIALVAPLEECVEAAERIRS 391
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 393 |
| >gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 5e-26
Identities = 98/362 (27%), Positives = 159/362 (43%), Gaps = 35/362 (9%)
Query: 113 IAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 171
+ EA I I EG + +Y P G ELR I LK+ L D+ L++ GA +S+
Sbjct: 46 VREAMIRCIEEGEYCKYPPPEGFPELRELI---LKD---LGLDDDEALITAGATESLYLV 99
Query: 172 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE-NFLLDPKVLESKLTEKSR 230
+ A SPGD + P P ++ A A + +P E N+ L P++++ + E +R
Sbjct: 100 MRAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDENTR 159
Query: 231 LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 290
L+ L P NP GS Y + + E A I A+ +L D Y +A + P
Sbjct: 160 LIYLIDPLNPLGSSYTEEEIKEFAEI-ARDNDAFLLHDCTYRD--FAREHTLAAEYAP-- 214
Query: 291 WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLG 350
E T+T FSK F M G R+G + + I G + I+Q+A +A L
Sbjct: 215 -EHTVTSYSFSKIFGMAGLRIGAVVATPDLIEVVKSIVIN-DLGTNVIAQEAAIAGL--- 269
Query: 351 YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDFSTYYGSEAEGFGK 409
E + ++ + + + + ++ E+EGV + P + ID S G
Sbjct: 270 KVKDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISEA------GI-- 321
Query: 410 IENSESLCRYLLDKAQVALVPG----DAFGDDTCIRISYAASLTTLQAAVERIKKGLLTL 465
+ E L YLL++ ++ + G FGD IR+S++ ++ E + TL
Sbjct: 322 --DPEDLVEYLLER-KIFVRQGTYTSKRFGDRY-IRVSFSIPREQVEVFCEEFPDVVETL 377
Query: 466 RP 467
R
Sbjct: 378 RT 379
|
Length = 380 |
| >gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 9e-26
Identities = 77/332 (23%), Positives = 145/332 (43%), Gaps = 22/332 (6%)
Query: 127 RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 186
R P+ G LR+AI + + + ++ ++G+ ++I + A+ PGDEV++
Sbjct: 46 RDGPSLGGEGLRAAIADRWRGGD-----AHVVMTTHGSSEAIYLVLTALLRPGDEVVVVD 100
Query: 187 PFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 246
P + S +A P F D L + LT ++R +++ P NPTG+
Sbjct: 101 PAYHSLSHLAVATGCEVRPWPLLAVRGFRPDLDALRALLTPRTRAVVVNFPHNPTGASVT 160
Query: 247 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306
LDE+ A+ +L+ D + +++ +++R ++ SKAF +
Sbjct: 161 PRELDELLERAARSGAVLLW-DNAFADLVH---DAPPLPDPSALYDRVISFGTLSKAFGL 216
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
G R+G+ GP +A +++ T S + + +A + + +A + ++ +A
Sbjct: 217 PGLRVGWCVGPADLLAELVRLRDYTTLSLSPLVEL--LAEVAVEHADALIGPRLAEARAN 274
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
RR L + + V+ + P+G F F + LCR LL + V
Sbjct: 275 RRRLLDWAAAHPDVVRCTPPEGGVAAFPRFP-----------GHADVTDLCRRLLARHGV 323
Query: 427 ALVPGDAFGDDTCIRISYAASLTTLQAAVERI 458
LVPG FG +R+ + S L+A + R+
Sbjct: 324 LLVPGSCFGAADRMRLGFGGSSAELRAGLARL 355
|
Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359 |
| >gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-24
Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 16/197 (8%)
Query: 133 GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSY 192
G+ E + A+ L + + P+ IL +NGA + + A+ PGD VI P +Y
Sbjct: 63 GSPEFKEAVA-SLYQ----NVKPENILQTNGATGANFLVLYALVEPGDHVISVYP---TY 114
Query: 193 PEMARIAD---ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNL 249
++ I + A + +L D L + ++L+ + + +NPTG++ +
Sbjct: 115 QQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAY 174
Query: 250 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGW 309
L+EI I A+ VLSDE+Y + S S+ ++E+ ++ N SK +++ G
Sbjct: 175 LEEIVEI-ARSVDAYVLSDEVYRPL----DEDGSTPSIADLYEKGISTNSMSKTYSLPGI 229
Query: 310 RLGYIAGPKHFVAACNK 326
R+G+IA + + K
Sbjct: 230 RVGWIAANEEVIDILRK 246
|
Length = 373 |
| >gnl|CDD|235064 PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 7e-24
Identities = 92/352 (26%), Positives = 156/352 (44%), Gaps = 44/352 (12%)
Query: 97 VIRLAAGEPDFDTPVLIAEAGINAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSY 153
+I+LA+ E P+ + I AIR RY P+ EL++A+ K G+
Sbjct: 34 IIKLASNE----NPLGPSPKAIEAIRAAADELHRY-PDGSGFELKAALAEKF----GVD- 83
Query: 154 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 213
P++I++ NG+ + + A PGDEVI + YP A+ A PV +P +++
Sbjct: 84 -PERIILGNGSDEILELLARAYLGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVP---AKD 139
Query: 214 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR--LLVLSDEIY 271
+ D + + +T ++RL+ + +P+NPTG+ P +E+ R +A P L+VL DE Y
Sbjct: 140 YGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLPA---EEVERFLAGVPPDVLVVL-DEAY 195
Query: 272 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 331
+ L + + FSKA+ + G R+GY P + A N+++ F
Sbjct: 196 AEYVRRKDYEDGLE-LVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPPEIIDALNRVRQPF 254
Query: 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY 391
+S++ A VAAL V K E +L + EL G++ G F
Sbjct: 255 N--VNSLALAAAVAAL----DDDAFVEKSRALNAEGMAWLTEFLAEL-GLEYIPSVGNFI 307
Query: 392 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 443
L F +++ + LL + V + P +G +RI+
Sbjct: 308 LVD------------FDDGKDAAEAYQALLKRG-VIVRPVAGYGLPNALRIT 346
|
Length = 367 |
| >gnl|CDD|165711 PLN00143, PLN00143, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 9e-24
Identities = 83/379 (21%), Positives = 155/379 (40%), Gaps = 31/379 (8%)
Query: 98 IRLAAGEPD----FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLS 152
I G+P F T + +A + A+R F Y P G L R AI L +
Sbjct: 35 ISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQ 94
Query: 153 YTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV------IL 206
+PD + ++ G K + + + P +++P P +P++ A + +L
Sbjct: 95 LSPDDVYLTLGCKHAAEIIIKVLARPEANILLPRP---GFPDVETYAIFHHLEIRHFDLL 151
Query: 207 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 266
P + E +D +E+ E + +++ +P NP GSVY L++IA A+ +LV+
Sbjct: 152 PEKGWE---VDLDAVEAIADENTIAMVIINPGNPCGSVYSYEHLNKIAE-TARKLGILVI 207
Query: 267 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYI--AGPKHFVAAC 324
+DE+Y HI++ L +T+ SK + + GW LG++ P + C
Sbjct: 208 ADEVYGHIVFGSKPFVPM-GLFASIVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQIC 266
Query: 325 ---NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 381
+ I+ + L + SK + R F E+ +
Sbjct: 267 EIADSIKKALNPAPFPPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCI 326
Query: 382 KMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 440
+ +GAF+ + + + IE+ C L + + ++PG G +
Sbjct: 327 MCPQKAEGAFFALVKLNLLLLED------IEDDMEFCLKLAKEESLIILPGVTVGLKNWL 380
Query: 441 RISYAASLTTLQAAVERIK 459
RI++A ++L+ + R+K
Sbjct: 381 RITFAVEQSSLEDGLGRLK 399
|
Length = 409 |
| >gnl|CDD|215074 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 8e-23
Identities = 96/388 (24%), Positives = 174/388 (44%), Gaps = 47/388 (12%)
Query: 97 VIRLAAGEPD----FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGL 151
V+ L G+P F T +A A+R G + Y+ G L R AI L +
Sbjct: 54 VLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPY 113
Query: 152 SYTPDQILVSNGAKQSI--LQAVLAVCSPGDEVIIPAPFWVSYPEMA-------RIADAT 202
+ D I ++ G Q+I + +VLA PG +++P P + Y A R D
Sbjct: 114 ELSTDDIYLTAGCAQAIEIIMSVLA--QPGANILLPRPGYPLYEARAVFSGLEVRHFD-- 169
Query: 203 PVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 262
+LP R E +D + +E+ E + +++ +P+NP GSVY L +IA A+
Sbjct: 170 --LLPERGWE---VDLEGVEALADENTVAMVIINPNNPCGSVYSYEHLAKIAE-TARKLG 223
Query: 263 LLVLSDEIYEHIIYAPATHTSFASLPGMWERT---LTVNGFSKAFAMTGWRLGYIA--GP 317
+LV++DE+Y+H+ + F + G++ LT+ SK + + GWRLG+IA P
Sbjct: 224 ILVIADEVYDHLTFG---SKPFVPM-GVFGEVAPVLTLGSISKRWVVPGWRLGWIATCDP 279
Query: 318 KHFVAACNKIQS-----QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 372
+ + S ++ ++ Q A + + + E +K + +E D
Sbjct: 280 NGILKETKVVDSIRNYLNISTDPATFVQGA-IPQI-IANTKEEFFTKTLGLLKETADICY 337
Query: 373 KSFGELEGVKM-SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG 431
+ E++ + +P+G+ ++ + I++ C L + V ++PG
Sbjct: 338 EKIKEIKCITCPHKPEGSMFVMVKLDLSC------LSGIKDDMDFCCKLAKEESVVVLPG 391
Query: 432 DAFGDDTCIRISYAASLTTLQAAVERIK 459
A G +RI++A +L+ +ER+K
Sbjct: 392 SALGMKNWLRITFAIDPPSLEDGLERLK 419
|
Length = 430 |
| >gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 1e-22
Identities = 106/402 (26%), Positives = 161/402 (40%), Gaps = 54/402 (13%)
Query: 89 ALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIR-----EGFTRYTPNAGTLELRSAICH 143
+IRL G+ P + EA NA+ E F Y P G LR AI
Sbjct: 27 RKKNPSADIIRLGIGDTTQPLPASVIEAFHNAVDELASPETFRGYGPEQGYPFLREAI-- 84
Query: 144 KLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATP 203
+ + P++I +S+GAK + + + ++ P + V + P + +Y + +A
Sbjct: 85 -AENDYRGRIDPEEIFISDGAKCDVFR-LQSLFGPDNTVAVQDPVYPAYLDSNVMAGRAG 142
Query: 204 VI-----------LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 252
V+ LP NF+ P++ E + ++ LCSP+NPTG+V K L E
Sbjct: 143 VLDDDGRYSKITYLPCTAENNFI--PELPEEPHID---IIYLCSPNNPTGTVLTKEQLKE 197
Query: 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLG 312
+ +H L+L D Y I P+ S +PG + FSK TG RLG
Sbjct: 198 LVDYANEH-GSLILFDAAYSAFISDPSLPHSIFEIPGARFCAIEFRSFSKTAGFTGVRLG 256
Query: 313 YIAGPK-------HFVAAC-NKIQSQFTSGASSISQKAGVAAL-GLG-YAGGEVVSKMVK 362
+ PK H V + Q +GAS Q+A A G G E +S
Sbjct: 257 WTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAGYAGEGLQPILEAISY--- 313
Query: 363 AFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLD 422
+ E L K+ E G K+ + A YL++ + +S +LL
Sbjct: 314 -YMENARILRKAL-EAAGFKVYGGEHAPYLWVKTP-----------EGISSWDFFDFLLY 360
Query: 423 KAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGL 462
+ V PG FG + +R S + A ERIK+ L
Sbjct: 361 EYHVVGTPGSGFGPSGEGFVRFSAFGKRENIIEACERIKEAL 402
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Length = 402 |
| >gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 2e-22
Identities = 67/252 (26%), Positives = 122/252 (48%), Gaps = 21/252 (8%)
Query: 144 KLKEE--NGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 201
KL+EE S P I V NG+ + I +LA + GD VI P P + Y ++IA A
Sbjct: 63 KLREELARYCSVVPTNIFVGNGSDEIIHLIMLAFINKGDVVIYPHPSFAMYSVYSKIAGA 122
Query: 202 TPVILPTRISENFLLD-PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 260
+ P ++ E++ D ++ + +L+ LC+P+NPTGSV + ++I +I+ K
Sbjct: 123 VEI--PVKLKEDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIER---EDIIKIIEKS 177
Query: 261 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 320
++V+ + +E Y + + +E + + SKAF + G R+GY ++
Sbjct: 178 RGIVVVDEAYFE--FYG----NTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANENI 231
Query: 321 VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 380
+ N ++S + +S+SQ + L G V+ + V R+ L+K ++ G
Sbjct: 232 LKYLNLVKSPYN--INSLSQVIALKVLRTG-----VLKERVNYILNERERLIKELSKIPG 284
Query: 381 VKMSEPQGAFYL 392
+K+ + F L
Sbjct: 285 IKVYPSKTNFIL 296
|
Length = 351 |
| >gnl|CDD|235742 PRK06207, PRK06207, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 2e-21
Identities = 93/391 (23%), Positives = 167/391 (42%), Gaps = 41/391 (10%)
Query: 92 QAGVSVIRLAAGEPDFDTPVLIAEAGINAIR----------EGFTR-----YTPNAGTLE 136
Q+ + L GEP PV + ++A G R YT G +
Sbjct: 23 QSAAGLEALLRGEPLPGRPVDFSHGDVDAHEPTPGAFELFSAGVERGGVQAYTEYRGDAD 82
Query: 137 LRSAICHKLKEENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM 195
+R + +L G D+++++ G + ++ AV A + GD+V I P + + ++
Sbjct: 83 IRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKL 142
Query: 196 ARIADATPVILPTRI-----SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLL 250
+ ++P ++ + LD LE R+ + +P+NP G VY +
Sbjct: 143 VEFFEG--EMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVFLFSNPNNPAGVVYSAEEI 200
Query: 251 DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWR 310
+IA + ++ V+ D++Y ++Y ++T +LP E +T+ G SK +++G+R
Sbjct: 201 AQIAALARRY-GATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYR 259
Query: 311 LGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRD 369
LG G + K+Q+ + A+ SQ A L ++ + + + + RD
Sbjct: 260 LGVAFGSPAIIDRMEKLQAIVSLRAAGYSQ----AVLRTWFSEPDGWMKDRIARHQAIRD 315
Query: 370 FLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV 429
L++ +EGV + PQ YLF S + F KI L +A V +
Sbjct: 316 DLLRVLRGVEGVFVRAPQAGSYLFPRLPRLAVSLHD-FVKI---------LRLQAGVIVT 365
Query: 430 PGDAFGDDT--CIRISYAASLTTLQAAVERI 458
PG F T IR++++ AA ERI
Sbjct: 366 PGTEFSPHTADSIRLNFSQDHAAAVAAAERI 396
|
Length = 405 |
| >gnl|CDD|180947 PRK07366, PRK07366, succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 9e-21
Identities = 95/390 (24%), Positives = 172/390 (44%), Gaps = 40/390 (10%)
Query: 85 DQATALA-QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR-YTPNAGTLELRSAIC 142
D+A A A AG +I L+ G D P EA ++ + T Y GTL+ R A
Sbjct: 19 DRAKAQARAAGKELIDLSLGSSDLPAPAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAA 78
Query: 143 HKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 201
++ GL+ P+ ++L G+++ LAV +PGD ++ P + S+ +A
Sbjct: 79 QWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHAGGVYLAGG 138
Query: 202 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 261
+P R +FL + +++ ++RL++L P NPT ++ P + E +H
Sbjct: 139 QIYPMPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHD 198
Query: 262 RLLV----LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIA 315
+LV D +++ + P+ L E+++++ F SK++ M G+R+G+
Sbjct: 199 LVLVHDFPYVDLVFDGEVEPPSI------LQADPEKSVSIEFFTLSKSYNMGGFRIGFAI 252
Query: 316 GPKHFVAACNKIQSQFTSGASSISQKAG-----VAALGLGYAGGEVVSKMVKAFRERRDF 370
G + A ++++ +Q G +AAL V + V+ FR+RRD
Sbjct: 253 GNAQLIQALRQVKA-----VVDFNQYRGILNGAIAALT---GPQATVQQTVQIFRQRRDA 304
Query: 371 LVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 430
+ + ++ G + P+ Y++ + NS C L+ + VA P
Sbjct: 305 FINALHQI-GWPVPLPEATMYVWAKLPEPWQG---------NSVEFCTQLVAQTGVAASP 354
Query: 431 GDAFGD--DTCIRISYAASLTTLQAAVERI 458
G FG + +R + L+ AVERI
Sbjct: 355 GSGFGKSGEGYVRFALVHDPDILEEAVERI 384
|
Length = 388 |
| >gnl|CDD|236393 PRK09147, PRK09147, succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 1e-20
Identities = 106/397 (26%), Positives = 160/397 (40%), Gaps = 62/397 (15%)
Query: 93 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGL- 151
A + I L+ GEP TP I +A + +G Y AG LR AI L+ GL
Sbjct: 27 ADLPPISLSIGEPKHPTPAFIKDALAANL-DGLASYPTTAGLPALREAIAAWLERRYGLP 85
Query: 152 SYTPD-QILVSNGAKQ---SILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILP 207
+ P Q+L NG+++ + Q V+ PG V+ P PF+ Y A +A A P L
Sbjct: 86 ALDPATQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEPYFLN 145
Query: 208 TRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR--LLV 265
+ NF D + +++ +++LL +CSP NPTG+V P LD+ ++ A R ++
Sbjct: 146 CDPANNFAPDFDAVPAEVWARTQLLFVCSPGNPTGAVLP---LDDWKKLFALSDRYGFVI 202
Query: 266 LSDEIYEHIIYAPATHTSFASLP-------GMWERTLTVNGFSKAFAMTGWRLGYIAGPK 318
SDE Y I Y L ++R + + SK + G R G
Sbjct: 203 ASDECYSEI-YFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSG------ 255
Query: 319 HFVAACNKIQSQFT-------SGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDF 370
FVA + +F Q A +AA E V + +RE+ D
Sbjct: 256 -FVAGDAALLKKFLLYRTYHGCAMPPAVQAASIAAWN-----DEAHVRENRALYREKFDA 309
Query: 371 LVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 430
+ + V++ P FYL+ G + E R L V ++P
Sbjct: 310 VTPILAPVLDVQL--PDAGFYLWAKVP---GDDTE----------FARRLYADYNVTVLP 354
Query: 431 G-----DAFGDDTC---IRISYAASLTTLQAAVERIK 459
G +A G + +RI+ A L A ERI
Sbjct: 355 GSYLAREAHGVNPGAGRVRIALVAPLAECVEAAERIV 391
|
Length = 396 |
| >gnl|CDD|235106 PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 3e-20
Identities = 78/354 (22%), Positives = 144/354 (40%), Gaps = 50/354 (14%)
Query: 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD 156
+++LA+ E + + EA + E P+ ELR+ + L + +
Sbjct: 31 IVKLASNENPYGPSPKVKEAIAAHLDE--LALYPDGYAPELRTKVAKHLGVD------EE 82
Query: 157 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 216
Q+L G + I A+ +PG ++ P + Y A I A +P + +
Sbjct: 83 QLLFGAGLDEVIQMISRALLNPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK---DGGH 139
Query: 217 DPKVLESKLTEKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIY-EHI 274
D + + + E+++++ +C+P+NPTG+ V + LL + + +LV+ DE Y E++
Sbjct: 140 DLEAMLKAIDEQTKIVWICNPNNPTGTYVNHEELLSFLESV---PSHVLVVLDEAYYEYV 196
Query: 275 IYAPATHT-----SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS 329
T + +L + RT FSKA+ + R+GY + + N +
Sbjct: 197 TAEDYPDTLPLLEKYENL--IVLRT-----FSKAYGLAALRVGYGIASEELIEKLNIARP 249
Query: 330 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGA 389
F + + I+Q A +AAL + + V+ E + E G+ Q
Sbjct: 250 PFNT--TRIAQYAAIAALE----DQAFLKECVEKNAEGLEQYYAFCKEY-GLFYYPSQTN 302
Query: 390 FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 443
F +F+D ++ L LL K + G A G T +RI+
Sbjct: 303 F-IFVDTG-------------RDANELFEALLKKGYIVR-SGAALGFPTGVRIT 341
|
Length = 359 |
| >gnl|CDD|184830 PRK14809, PRK14809, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 5e-20
Identities = 72/259 (27%), Positives = 120/259 (46%), Gaps = 23/259 (8%)
Query: 116 AGINAIREGFTRYT--PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 173
A + AIRE R P A +L +A+ + +P+Q+ ++NG ++
Sbjct: 47 AAVEAIREAAERVHSYPKASHADLTAALADRW------DVSPEQVWLANGGDGALDYLAR 100
Query: 174 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDP-KVLESKLTEKSRLL 232
A+ PGD V++P P + Y AR P +++F VL++ E R++
Sbjct: 101 AMLDPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTADTVLDAYDGE--RIV 158
Query: 233 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292
L SP NPTGS P + ++ +A + LV+ DE Y P S +L +
Sbjct: 159 YLTSPHNPTGSEIPLDEVEALAERTDEET--LVVVDEAYGEFAERP----SAVALVEERD 212
Query: 293 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA 352
+ FSKA+ + G RLGY P+ + A ++ + F AS ++ +AG+AAL
Sbjct: 213 DVAVLRTFSKAYGLAGLRLGYAVVPEEWADAYARVNTPFA--ASELACRAGLAALD---- 266
Query: 353 GGEVVSKMVKAFRERRDFL 371
E V + V+ R R+++
Sbjct: 267 DDEHVERTVETARWAREYI 285
|
Length = 357 |
| >gnl|CDD|215119 PLN02187, PLN02187, rooty/superroot1 | Back alignment and domain information |
|---|
Score = 91.3 bits (226), Expect = 9e-20
Identities = 88/377 (23%), Positives = 161/377 (42%), Gaps = 23/377 (6%)
Query: 96 SVIRLAAGEPD----FDTPVLIAEAGINAIREGF-TRYTPNAGTLELRSAICHKLKEENG 150
+++ L G+P F T + +A ++ +R G Y P AG L R A+ + +
Sbjct: 67 TILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLP 126
Query: 151 LSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI 210
TP+ I ++ G Q I ++ P +++P P + Y A +
Sbjct: 127 HKLTPEDIFLTAGCNQGIEIVFESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLP 186
Query: 211 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 270
+ + +D + +E+ E + +++ +P+NP G+VY + L ++A A+ ++V+SDE+
Sbjct: 187 EKEWEIDLEGIEAIADENTVAMVVINPNNPCGNVYSHDHLKKVAE-TARKLGIMVISDEV 245
Query: 271 YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA--GPKHFVAACNKIQ 328
Y+ I+ S + LT+ G SK + + GW++G+IA P+ +Q
Sbjct: 246 YDRTIFGDNPFVSMGKFASIVP-VLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQ 304
Query: 329 S-----QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 383
S T ++I Q A A L A +K K + D + ++ V
Sbjct: 305 SIKQNLDVTPDPATIIQAALPAI--LEKADKNFFAKKNKILKHNVDLVCDRLKDIPCVVC 362
Query: 384 -SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRI 442
+P+ YL E I++ C L + + +PGDA G +RI
Sbjct: 363 PKKPESCTYLLTKL------ELSLMDNIKDDIDFCVKLAREENLVFLPGDALGLKNWMRI 416
Query: 443 SYAASLTTLQAAVERIK 459
+ L+ A+ER+K
Sbjct: 417 TIGVEAHMLEDALERLK 433
|
Length = 462 |
| >gnl|CDD|181053 PRK07590, PRK07590, L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 1e-19
Identities = 102/408 (25%), Positives = 151/408 (37%), Gaps = 78/408 (19%)
Query: 96 SVIRLAAGEPDFDTPVLIAEAGINAI---------REGFTRYTPNAGTLELRSAICHKLK 146
+IRL G D + A I A+ E F Y P G LR I
Sbjct: 35 KIIRLGIG----DVTQPLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDY 90
Query: 147 EENGLSYTPDQILVSNGAK------QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 200
+ G + D+I +S+GAK I P + + + P + Y + +A
Sbjct: 91 QARGCDISADEIFISDGAKCDTGNILDIF-------GPDNTIAVTDPVYPVYVDTNVMAG 143
Query: 201 ATP-----------VILPTRISENFLLD-PKVLESKLTEKSRLLILCSPSNPTGSVYPKN 248
T V LP NF+ + P+ EK ++ LC P+NPTG+V K
Sbjct: 144 RTGEANEDGRYSGIVYLPCTAENNFVPELPE-------EKVDIIYLCFPNNPTGTVLTK- 195
Query: 249 LLDEIARIV--AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306
+++ V AK L+L D YE I P+ S + G E + FSK
Sbjct: 196 --EQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGF 253
Query: 307 TGWRLGYIAGPKHFVAAC------------NKIQSQFTSGASSISQKAGVAALGLGYAGG 354
TG R Y PK N+ QS +G S I Q+A A G
Sbjct: 254 TGTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSP--EGK 311
Query: 355 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSE 414
+ +++ + E + + G ++ A Y+++ S + F K
Sbjct: 312 AQIKELIDYYMENAKIIREGLESA-GFEVYGGVNAPYIWVKTPDGMSSW-DFFDK----- 364
Query: 415 SLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKK 460
LL +A V PG FG + R+S S + A+ERIKK
Sbjct: 365 -----LLQEANVVGTPGSGFGPSGEGYFRLSAFGSRENVLEAMERIKK 407
|
Length = 409 |
| >gnl|CDD|167650 PRK03967, PRK03967, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 3e-19
Identities = 78/334 (23%), Positives = 140/334 (41%), Gaps = 47/334 (14%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFT 126
+ V + KP + V G I L E FD P + E ++ F
Sbjct: 2 IRELVKSFKPYRVVE-----------GNYRIWLDKNENPFDLPEELKEEIFEELKRVPFN 50
Query: 127 RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 186
RY P+ + LR AI + I V NG+ + I + L G ++I
Sbjct: 51 RY-PHITSDPLREAIA------EFYGLDAENIAVGNGSDELI--SYLVKLFEGKHIVITP 101
Query: 187 PFWVSYPEMARIADATPVI-LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245
P + Y A++ + PVI +P + E+F +D + + K + + + +CSP+NPTG++
Sbjct: 102 PTFGMYSFYAKL-NGIPVIDVPLK--EDFTIDGERIAEK-AKNASAVFICSPNNPTGNLQ 157
Query: 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305
P+ +EI +++ V+ DE Y A + S L + + + FSKAF
Sbjct: 158 PE---EEILKVL--ETGKPVVLDEAY-----AEFSGKSLIGLIDEYPNLILLRTFSKAFG 207
Query: 306 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 365
+ G R GY + + A +I+ F+ ++ K + L L + ++ + +
Sbjct: 208 LAGIRAGYAIANEEIIDALYRIKPPFSLN--ILTMK--IVRLALDHYD--LIEERIDYII 261
Query: 366 ERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTY 399
+ R+ + + GE + P A +L + Y
Sbjct: 262 KERERVRRELGE-----YAYPSDANFLLLKLDAY 290
|
Length = 337 |
| >gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase | Back alignment and domain information |
|---|
Score = 89.2 bits (221), Expect = 3e-19
Identities = 95/390 (24%), Positives = 165/390 (42%), Gaps = 41/390 (10%)
Query: 92 QAGVSVIRLAAGEPD----FDTPVLIAEAGINAIR-EGFTRYTPNAGTLELRSAICHKLK 146
+ G VI L G+P F T + EA ++A++ F Y P G + R AI L
Sbjct: 28 ENGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLS 87
Query: 147 EENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA-------RIA 199
+ + D + +++G Q+I A+ + PG +++P P + Y A R
Sbjct: 88 RDLPYKLSLDDVFITSGCTQAIDVALSMLARPGANILLPRPGFPIYELCAAFRHLEVRYV 147
Query: 200 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK 259
D +LP + E +D +E+ + + L++ +P NP G+VY L +IA A+
Sbjct: 148 D----LLPEKGWE---VDLDAVEALADQNTVALVIINPGNPCGNVYSYQHLKKIAE-TAE 199
Query: 260 HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA---- 315
++LV++DE+Y H+ + G LT+ SK + + GWRLG+
Sbjct: 200 KLKILVIADEVYGHLAFGSNPFVPMGVF-GSIVPVLTLGSLSKRWIVPGWRLGWFVTTDP 258
Query: 316 -----GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 370
PK V K A+ I +A V + L K + ++ D
Sbjct: 259 SGSFRDPK-IVERIKKYFDILGGPATFI--QAAVPTI-LEQTDESFFKKTINILKQSSDI 314
Query: 371 LVKSFGELEGVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV 429
E+ + +P+G+ + + + I + C L + V ++
Sbjct: 315 CCDRIKEIPCITCPHKPEGSMAVMVKLNLSL------LEDISDDIDFCFKLAREESVIIL 368
Query: 430 PGDAFGDDTCIRISYAASLTTLQAAVERIK 459
PG A G +RI++AA ++L+ A+ RIK
Sbjct: 369 PGTAVGLKNWLRITFAADPSSLEEALGRIK 398
|
Length = 409 |
| >gnl|CDD|235311 PRK04781, PRK04781, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 86.9 bits (215), Expect = 1e-18
Identities = 79/282 (28%), Positives = 125/282 (44%), Gaps = 23/282 (8%)
Query: 120 AIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPG 179
A + TR P+ LRSA L G P+Q+L+ G+ ++I V A+C PG
Sbjct: 47 ADPDASTRRYPDPQPPGLRSA----LAALYGC--APEQLLIGRGSDEAIDLLVRALCVPG 100
Query: 180 -DEVIIPAPFWVSYPEMARIADATPVILP-TRISENFLLD-PKVLESKLTEKSRLLILCS 236
D V++ P + Y AR+ +A V +P ++ F D P ++ + L ++L+ LCS
Sbjct: 101 RDAVLVTPPVFGMYAVCARLQNAPLVEVPLVDGADGFHADVPAIVAAALASNAKLVFLCS 160
Query: 237 PSNPTGSVYPKNLLDEIARIV-AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE-RT 294
PSNP GS LD+I R + A + LV+ DE Y P+ A + RT
Sbjct: 161 PSNPAGSAIA---LDQIERALQALQGKALVVVDEAYGEFSDVPSAVGLLARYDNLAVLRT 217
Query: 295 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG 354
L SKA A+ R+G + +A + Q+ + + +A L
Sbjct: 218 L-----SKAHALAAARIGSLIANAELIAVLRRCQAPYPVPTPCAA----LAEQALSAPAL 268
Query: 355 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF 396
V ++ V R R+ L + +L GV+ P +L + F
Sbjct: 269 AVTARRVAEVRAERERLHAALAQLPGVRRVYPSQGNFLLVRF 310
|
Length = 364 |
| >gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 1e-18
Identities = 64/273 (23%), Positives = 102/273 (37%), Gaps = 34/273 (12%)
Query: 125 FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVII 184
+ RY P+ ELR+A +L NGA Q + + + +PG V++
Sbjct: 41 WARY-PDPEYDELRAAAAAYYG------LPAASVLPVNGA-QEAIYLLPRLLAPGR-VLV 91
Query: 185 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 244
AP + Y R A V LP D L + L E + LL++C+P+NPTG +
Sbjct: 92 LAPTYSEYARAWRAAGHEVVELP---------DLDRLPAALEE-ADLLVVCNPNNPTGRL 141
Query: 245 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT-HTSFASLPGMWERTLTVNGFSKA 303
P L +A + LV+ DE + T S A + + + +K
Sbjct: 142 IPPETLLALAARLRARGGWLVV-DE-----AFIDFTPDASLAPQAARFPGLVVLRSLTKF 195
Query: 304 FAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA-SSISQKAGVAALGLGYAGGEVVSKMVK 362
F + G RLG++ +A ++ + + AG AAL A +
Sbjct: 196 FGLAGLRLGFVVAHPALIAR---LREALGPWTVNGPALAAGRAAL----ADTAWQAATRA 248
Query: 363 AFRERRDFLVKSFGELEGVKMSEPQGAFYLFID 395
R L L G+++ F L
Sbjct: 249 RLAAERARLAALLARLGGLRVVGGTALFLLVRT 281
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see pfam00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 330 |
| >gnl|CDD|178597 PLN03026, PLN03026, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 1e-17
Identities = 86/311 (27%), Positives = 140/311 (45%), Gaps = 30/311 (9%)
Query: 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP 155
+++L A E + P + EA N F P+ + LR+A+ E++GL
Sbjct: 53 DIVKLDANENPYGPPPEVLEALGNM---KFPYVYPDPESRRLRAALA----EDSGLE--S 103
Query: 156 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 215
+ ILV GA + I + V PGD++I P + Y A + A + +P + +F
Sbjct: 104 ENILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVP--RTPDFS 161
Query: 216 LD-PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 274
LD P+++E+ T K +LL L SP+NP GS+ + L +I + P L+VL DE Y
Sbjct: 162 LDVPRIVEAVETHKPKLLFLTSPNNPDGSIISDDDLLKILEL----PILVVL-DEAYIEF 216
Query: 275 IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 334
+T S ++ + + FSK + G R+GY A P + + + +
Sbjct: 217 ----STQESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYN-- 270
Query: 335 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFI 394
S ++ A AAL + + + A E R+ L FG L+ V EP + FI
Sbjct: 271 VSVAAEVAACAALS----NPKYLEDVKNALVEERERL---FGLLKEVPFLEPYPSDANFI 323
Query: 395 DFSTYYGSEAE 405
G +A+
Sbjct: 324 LCRVTSGRDAK 334
|
Length = 380 |
| >gnl|CDD|240391 PTZ00377, PTZ00377, alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 3e-17
Identities = 92/392 (23%), Positives = 152/392 (38%), Gaps = 70/392 (17%)
Query: 118 INAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI---LQAVLA 174
+NAI G YT +AG +R A+ ++ +G+ P I +++GA I LQ ++
Sbjct: 101 LNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIG 160
Query: 175 VCSPGDEVIIPAPFWVSYP-EMARIA--DATPVILPTRISENFLLDPKVLESKLTE---- 227
P D V+IP P YP A I V + + LD + LE +
Sbjct: 161 --DPSDGVMIPIP---QYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRN 215
Query: 228 --KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSF 284
R L++ +P NPTG V +++++EI + + +++++DE+Y+ IY SF
Sbjct: 216 GITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEK-GIVLMADEVYQENIYDGEKPFISF 274
Query: 285 ----ASLPGMWERTLTVNGF---SKAF-AMTGWRLGYIAGPKHFVAACNKIQSQFTSGAS 336
LP + + + F SK G R GY I +
Sbjct: 275 RKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYF--------ELTNIPPEVR---- 322
Query: 337 SISQKAGVAALGL--GYAGGEVVSKMVK---------------------AFRERRDFLVK 373
Q +A++ L G + M + + R + L
Sbjct: 323 --EQIYKLASINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTD 380
Query: 374 SFGELEGVKMSEPQGAFYLF--IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG 431
++EGV +GA Y F I+ EA+ G C LL+ + +VPG
Sbjct: 381 ELNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKERGL-APDVLYCLELLESTGIVVVPG 439
Query: 432 DAFG--DDTC-IRISYAASLTTLQAAVERIKK 460
FG T RI+ ++ V++IK+
Sbjct: 440 SGFGQKPGTYHFRITILPPEEQIEEMVKKIKE 471
|
Length = 481 |
| >gnl|CDD|132578 TIGR03539, DapC_actino, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 3e-16
Identities = 102/383 (26%), Positives = 153/383 (39%), Gaps = 51/383 (13%)
Query: 87 ATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLK 146
A A + ++ L+ G P P LI A A Y GT ELR AI L+
Sbjct: 14 AKAASHPD-GIVDLSVGTPVDPVPPLIRAALAAAADA--PGYPQTWGTPELREAIVDWLE 70
Query: 147 EENG-LSYTPDQILVSNGAKQSI--LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATP 203
G P +L G K+ + L +L + PGD V+IP + +Y A +A ATP
Sbjct: 71 RRRGVPGLDPTAVLPVIGTKELVAWLPTLLGL-GPGDTVVIPELAYPTYEVGALLAGATP 129
Query: 204 VILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV--AKHP 261
V + LDP L+ L SP NPTG V +DE+ IV A+
Sbjct: 130 V----AADDPTELDP--------VGPDLIWLNSPGNPTGRVLS---VDELRAIVAWARER 174
Query: 262 RLLVLSDEIYEHIIYAPAT----HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 317
+V SDE Y + + G L V+ SK + G+R G++AG
Sbjct: 175 GAVVASDECYLELGWEGRPVSILDPRVCG--GDHTGLLAVHSLSKRSNLAGYRAGFVAGD 232
Query: 318 KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377
VA ++ + Q A VAALG V++ + RR L + E
Sbjct: 233 PALVAELLTVRKHAGLMVPAPVQAAMVAALG----DDGHVAEQKARYAARRAQLKPAL-E 287
Query: 378 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD 437
G ++ + YL ++T G E++ L + + + PGD +G
Sbjct: 288 KAGFRIDHSEAGLYL---WAT------RG----EDAWDTVDRLAELG-ILVAPGDFYGPA 333
Query: 438 TC--IRISYAASLTTLQAAVERI 458
+R++ A+ + AAV R+
Sbjct: 334 GSQHVRVALTATDERIAAAVARL 356
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 357 |
| >gnl|CDD|180734 PRK06855, PRK06855, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 3e-16
Identities = 84/313 (26%), Positives = 126/313 (40%), Gaps = 47/313 (15%)
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
Y P G LE R + + G TPD I+ NG +I + + VI P+P
Sbjct: 69 YCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAI-AKIYGLLRREARVIGPSP 127
Query: 188 FWVSYP-----EMARIADATPVILPTRISENFLLDPKVLESKLTEKSR------LLILCS 236
+Y E A A PV N+ D LE+K+ K LLI +
Sbjct: 128 ---AYSTHSSAEAAH-AGYPPVTYRLDPENNWYPDLDDLENKV--KYNPSIAGILLI--N 179
Query: 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL----PGMWE 292
P NPTG+VYPK +L EI I A+ L ++ DEIY +I+Y + + PG+
Sbjct: 180 PDNPTGAVYPKEILREIVDI-AREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGI-- 236
Query: 293 RTLTVNGFSKAFAMTGWRLGYIA---GPK--HFVAACNKIQSQFTSGASSIS--QKAGVA 345
+ G SK G R G+I K F N I + S + Q A
Sbjct: 237 ---ALKGISKELPWPGSRCGWIEVYNADKDEVFKKYINSILNAKMIEVCSTTLPQMAIPR 293
Query: 346 ALG----LGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG 401
+ Y + + K + +R + + ++ G+K++ GAFY+ + F
Sbjct: 294 IMSHPEYKNY-----LKERNKRYEKRSNIAYEKLKDVPGLKVNRTNGAFYMTVVFEDGVL 348
Query: 402 SEAEGFGKIENSE 414
+ + IEN E
Sbjct: 349 NNKQSL-PIENPE 360
|
Length = 433 |
| >gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 3e-15
Identities = 77/301 (25%), Positives = 121/301 (40%), Gaps = 48/301 (15%)
Query: 110 PVLIAEAGINAIREGF---TRYTPNAGTLELRSAIC--HKLKEENGLSYTPDQILVSNGA 164
P+ + E+ AI E Y P+ LELR I +L EN +++ NGA
Sbjct: 30 PLGVPESLKQAITENLDKLVEY-PDPDYLELRKRIASFEQLDLEN--------VILGNGA 80
Query: 165 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESK 224
+ I V P +V+I AP + Y + DA NF + VLE +
Sbjct: 81 TELIFNIVKVT-KP-KKVLILAPTFAEYERALKAFDAEIEYAELTEETNFAANEIVLE-E 137
Query: 225 LTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF 284
+ E+ L+ LC+P+NPTG + K + +I + + ++ DE +F
Sbjct: 138 IKEEIDLVFLCNPNNPTGQLISKEEMKKIL-DKCEKRNIYLIIDE-------------AF 183
Query: 285 ASLPGMWERTLTVN------------GFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 332
E +N F+K FA+ G RLGY +A K+
Sbjct: 184 MDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLA--EKLLQ--M 239
Query: 333 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYL 392
SI+ A +A L E + K ++ +E +DFL E +G+K+ +P F
Sbjct: 240 REPWSINTFADLAGQTL-LDDKEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYKPSVNFIF 298
Query: 393 F 393
F
Sbjct: 299 F 299
|
Length = 354 |
| >gnl|CDD|235115 PRK03317, PRK03317, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 9e-15
Identities = 84/311 (27%), Positives = 135/311 (43%), Gaps = 33/311 (10%)
Query: 103 GEPDFDTPVL-------------IAEAGINAIRE---GFTRYTPNAGTLELRSAICHKLK 146
G P D PV + A+ E G RY P+ + LR+ + L
Sbjct: 21 GAPQLDVPVRLNTNENPYPPSPALVADIAEAVAEAAAGLNRY-PDRDAVALRADLAAYLT 79
Query: 147 EENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 206
+ G+ T + + +NG+ + + Q + A PG + P + +P +AR V
Sbjct: 80 AQTGVGLTVENVWAANGSNEILQQLLQAFGGPGRTALGFVPSYSMHPIIARGTHTEWVEG 139
Query: 207 PTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 265
P +F LD + + E + ++ L SP+NPTG+ P LD++ I+ P ++V
Sbjct: 140 PRA--ADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALP---LDDVEAILDAAPGIVV 194
Query: 266 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 325
+ DE Y T ++ LP + R + SKAFA G RLGY+A V A
Sbjct: 195 V-DEAY-AEFRRSGTPSALTLLPE-YPRLVVSRTMSKAFAFAGGRLGYLAAAPAVVDALR 251
Query: 326 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385
++ + S+++Q A AAL + + V A R RD +V EL G++++
Sbjct: 252 LVRLPYH--LSAVTQAAARAAL----RHADELLASVAALRAERDRVVAWLREL-GLRVAP 304
Query: 386 PQGAFYLFIDF 396
F LF F
Sbjct: 305 SDANFVLFGRF 315
|
Length = 368 |
| >gnl|CDD|178004 PLN02376, PLN02376, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 75.1 bits (184), Expect = 2e-14
Identities = 55/215 (25%), Positives = 100/215 (46%), Gaps = 17/215 (7%)
Query: 133 GTLELRSAICHKLKEENG--LSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWV 190
G + R AI H + + G +++ P+++++S GA + + + PGD +IP+P++
Sbjct: 95 GLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYA 154
Query: 191 SYPEMARIADATPVI-LPTRISENFLLDPKVLE------SKLTEKSRLLILCSPSNPTGS 243
++ R +I +P S+NF L + + +K + LIL +PSNP G+
Sbjct: 155 AFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGT 214
Query: 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLT------- 296
+ K+ L + R V + LV+ DEIY ++A S A + + +
Sbjct: 215 MLDKDTLTNLVRFVTRKNIHLVV-DEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHI 273
Query: 297 VNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 331
V SK + G+R+G + V +C + S F
Sbjct: 274 VYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMSSF 308
|
Length = 496 |
| >gnl|CDD|215327 PLN02607, PLN02607, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 4e-14
Identities = 81/327 (24%), Positives = 149/327 (45%), Gaps = 34/327 (10%)
Query: 153 YTPDQILVSNGAKQS--ILQAVLAVCSPGDEVIIPAPFWVSYPEMAR-IADATPV-ILPT 208
+ PD+I+++ GA + +L +LA PGD +++P P+ YP R + T V I+P
Sbjct: 118 FDPDRIVLTAGATAANELLTFILA--DPGDALLVPTPY---YPGFDRDLRWRTGVKIVPI 172
Query: 209 R--ISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 260
S NF + P+ LE+ E + R +++ +PSNP G+ +++L++I V +
Sbjct: 173 HCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRK 232
Query: 261 PRLLVLSDEIYEHIIYAPATHTSFASL------PGMWERTLTVNGFSKAFAMTGWRLGYI 314
LV SDEIY +++ + S A + G+ ER V SK + G+R+G I
Sbjct: 233 NIHLV-SDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTI 291
Query: 315 AGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 374
V + S FT SS +Q + L + + R+R + +V+
Sbjct: 292 YSYNDKVVTTARRMSSFTL-VSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQG 350
Query: 375 FGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA- 433
G++ + + +++ S + E +L +L + ++ + PG +
Sbjct: 351 LRR-AGIECLKGNAGLFCWMNLSPLLET-----PTREGELALWDSILREVKLNISPGSSC 404
Query: 434 -FGDDTCIRISYA-ASLTTLQAAVERI 458
+ R+ +A S TL+ A++RI
Sbjct: 405 HCSEPGWFRVCFANMSEDTLEVALKRI 431
|
Length = 447 |
| >gnl|CDD|179950 PRK05166, PRK05166, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 1e-13
Identities = 86/329 (26%), Positives = 137/329 (41%), Gaps = 44/329 (13%)
Query: 91 AQAGVSVI-RLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEEN 149
A+ GV I +L + E + A I E Y P+ LR AI +
Sbjct: 31 ARYGVPRIAKLGSNENPLGPSPAVRRA-FADIAELLRLY-PDPQGRALREAIAARTGVPA 88
Query: 150 GLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVII--PA-PFWVSYPEM--ARIADATPV 204
D+I++ NG++ I AV PGD V+ P+ P YP M AR + V
Sbjct: 89 ------DRIILGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLHEDYPTMMGAR-VERVTV 141
Query: 205 ILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV-AKHPRL 263
+ + D L + + R+L+ +PSNP GS D++AR++ A P
Sbjct: 142 ------TPDLGFDLDALCAAVARAPRMLMFSNPSNPVGSWLTA---DQLARVLDATPPET 192
Query: 264 LVLSDEIYEHIIYAPATHTSFA-----SLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGP 317
L++ DE Y ++ LP + RT FSKA+ + G R+GY +
Sbjct: 193 LIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRT-----FSKAYGLAGLRVGYGLVSD 247
Query: 318 KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377
V +++++ F + +Q A +AAL + V+ + A RER +K
Sbjct: 248 PELVGLLDRVRTPFN--VNGAAQAAALAALDDEEHLAKGVA-LALAERER----LKKELA 300
Query: 378 LEGVKMSEPQGAFYLFIDFSTYYGSEAEG 406
G +++ P A +LF D + AE
Sbjct: 301 EMGYRIA-PSRANFLFFDARRPASAVAEA 328
|
Length = 371 |
| >gnl|CDD|236119 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 4e-13
Identities = 106/393 (26%), Positives = 161/393 (40%), Gaps = 65/393 (16%)
Query: 87 ATALAQA---GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICH 143
A A A A G+ + L+ G P P +I EA A Y AGT ELR AI
Sbjct: 18 AKATAAAHPDGI--VDLSVGTPVDPVPPVIQEALAAA--ADAPGYPTTAGTPELREAIVG 73
Query: 144 KLKEENGLSY-TPDQILVSNGAKQSI-LQAVLAVCSPGDEVIIPAPFWVSYP--EM-ARI 198
L G++ P +L G+K+ + L PGD V+IP ++YP E+ AR+
Sbjct: 74 WLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIPE---LAYPTYEVGARL 130
Query: 199 ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV- 257
A AT V R L P ++ L+ L SPSNPTG V +D + ++V
Sbjct: 131 AGATVV----RADSLTELGP--------QRPALIWLNSPSNPTGRVLG---VDHLRKVVA 175
Query: 258 -AKHPRLLVLSDEIYEHIIYAPAT----HTSFASLPGMWERTLTVNGFSKAFAMTGWRLG 312
A+ +V SDE Y + + G L V+ SK + G+R G
Sbjct: 176 WARERGAVVASDECYLELGWDAEPVSILDPRVCG--GDHTGLLAVHSLSKQSNLAGYRAG 233
Query: 313 YIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 372
++AG VA +++ + Q A VAALG V + + + RR L
Sbjct: 234 FVAGDPALVAELLEVRKHAGMMVPAPVQAAMVAALG----DDAHVREQRERYARRRAVLR 289
Query: 373 KSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK-AQVALV-- 429
+ E G ++ + YL + + E C + A+ ++
Sbjct: 290 PAL-EAAGFRVDHSEAGLYL-------WATRGED----------CWDTVAWLAERGILVA 331
Query: 430 PGDAFGDDTC--IRISYAASLTTLQAAVERIKK 460
PGD +G +R++ A+ + AAVER+
Sbjct: 332 PGDFYGPAGAQHVRVALTATDERIAAAVERLAA 364
|
Length = 364 |
| >gnl|CDD|234972 PRK01688, PRK01688, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 5e-13
Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 26/169 (15%)
Query: 154 TPDQILVSNGAKQSILQAVLAVCSPG-DEVIIPAPFWVSYPEMARIADATPVILPTRISE 212
P+Q+LVS GA + I + A C PG D ++ P + Y A +PT +
Sbjct: 73 KPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTL--D 130
Query: 213 NFLLDPKVLESKLTEKSRLLILCSPSNPTGS-VYPKNLLD--EIARIVAKHPRLLVLSDE 269
N+ LD + L + +++ +CSP+NPTG+ + P++L E+ R + +V++DE
Sbjct: 131 NWQLDLPAIADNL-DGVKVVYVCSPNNPTGNLINPQDLRTLLELTR-----GKAIVVADE 184
Query: 270 IYEHIIYAPATHTSFASLPGMWE-----RTLTVNGFSKAFAMTGWRLGY 313
Y I + P S A + RTL SKAFA+ G R G+
Sbjct: 185 AY--IEFCP--QASLAGWLAEYPHLVILRTL-----SKAFALAGLRCGF 224
|
Length = 351 |
| >gnl|CDD|179888 PRK04870, PRK04870, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 1e-12
Identities = 72/281 (25%), Positives = 120/281 (42%), Gaps = 32/281 (11%)
Query: 114 AEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 173
AE +N RY P+ L++A+ + G +L+ NG+ + I L
Sbjct: 53 AEVALN-------RY-PDPRAAALKAALRAAMGVPAGAD-----VLLGNGSDELIQLLAL 99
Query: 174 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLD-PKVLESKLTEKSRLL 232
A PG V+ P P +V Y A++A V +P +F LD P +L + + L+
Sbjct: 100 ACAKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLT--ADFTLDLPAMLAAIAEHRPALV 157
Query: 233 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292
L P+NPTG+++ ++ RI+ P L+V+ DE Y A S+ +
Sbjct: 158 FLAYPNNPTGNLFDD---ADVERIIEAAPGLVVV-DEAY----QPFAGD-SWLPRLARFP 208
Query: 293 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA 352
L + SK + G RLGY+AG ++A +K++ + + ++Q + AL
Sbjct: 209 NLLVMRTVSK-LGLAGLRLGYLAGHPAWIAELDKVRPPYN--VNVLTQATALFAL----E 261
Query: 353 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 393
+V+ R R L + L GV + F L
Sbjct: 262 HVDVLDAQAAQLRAERTRLAAALAALPGVTVFPSAANFILV 302
|
Length = 356 |
| >gnl|CDD|235053 PRK02610, PRK02610, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 2e-12
Identities = 74/285 (25%), Positives = 125/285 (43%), Gaps = 36/285 (12%)
Query: 127 RYTPNAGTLELRSAICHKLKEENGLSY--TPDQILVSNGAKQSILQAVLAVCSPGDEVII 184
RY P+ G L+ AI + E S TP I V NG+ + I ++A C G+ I+
Sbjct: 62 RY-PDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIATCLGGEGSIL 120
Query: 185 PAPFWVSYPEMARIADAT---PVILPTRISENFLLDPKVLESKLTEKS----RLLILCSP 237
A S M I T PV+ R E F +D +S + + R++ + P
Sbjct: 121 VAEPTFS---MYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHP 177
Query: 238 SNPTGSVYPKNLL--DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT- 294
++PTG N L E+ + + +LV+ DE Y + + T + + +
Sbjct: 178 NSPTG-----NPLTAAELEWLRSLPEDILVVIDEAY----FEFSQTTL---VGELAQHPN 225
Query: 295 -LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAG 353
+ + FSKAF + R+GY G +A K++ + S SQ A AL
Sbjct: 226 WVILRTFSKAFRLAAHRVGYAIGHPELIAVLEKVRLPYN--LPSFSQLAAQLALE---HR 280
Query: 354 GEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFST 398
E+++ + + +E RD L ++ EL +++ P A +L++ S
Sbjct: 281 QELLAAIPEILQE-RDRLYQALQELPQLRVW-PSAANFLYLRLSQ 323
|
Length = 374 |
| >gnl|CDD|236444 PRK09275, PRK09275, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 3e-12
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 15/102 (14%)
Query: 215 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH-PRLLVLSDEIYEH 273
L DP + + L L +PSNP L++IA IV + P L++++D++Y
Sbjct: 237 LRDPSI---------KALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYG- 286
Query: 274 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 315
+ + FA LP T+ V FSK F TGWRLG IA
Sbjct: 287 -TFVDDFRSLFAVLP---YNTILVYSFSKYFGATGWRLGVIA 324
|
Length = 527 |
| >gnl|CDD|180281 PRK05839, PRK05839, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 6e-12
Identities = 94/374 (25%), Positives = 150/374 (40%), Gaps = 47/374 (12%)
Query: 100 LAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQIL 159
L GEP F+TP I +A N +Y +AG LR A K + ++++
Sbjct: 29 LTIGEPQFETPKFIQDALKNNAHL-LNKYPKSAGEESLREAQRGFFKRRFKIELKENELI 87
Query: 160 VSNGAKQSIL---QAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN-FL 215
+ G ++ + Q VL + P PF+ Y E A IA V+L EN F
Sbjct: 88 PTFGTREVLFNFPQFVLFD-KQNPTIAYPNPFYQIY-EGAAIASRAKVLLMPLTKENDF- 144
Query: 216 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE----IY 271
P + E +L E L+IL SP+NPTG L E ++ KH +L ++DE IY
Sbjct: 145 -TPSLNEKELQE-VDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFIL-INDECYSEIY 201
Query: 272 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 331
E+ S ++ L +N SK + G R G+IAG + ++
Sbjct: 202 ENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGDASILKKYKAYRTYL 261
Query: 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE--RRDFLVKSFGELEGVKMSEPQGA 389
+ QKA A + E + FR ++ K E+ G+ + P
Sbjct: 262 GCASPLPLQKAAAVA----WLDDE----HAEFFRNIYAKNL--KLAREILGITI--PPAT 309
Query: 390 FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTC----IRISYA 445
FY+++ ++N E + L + ++PG G + +RI+
Sbjct: 310 FYVWL--------------PVDNDEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALV 355
Query: 446 ASLTTLQAAVERIK 459
L+ A+E IK
Sbjct: 356 YDTPKLEKALEIIK 369
|
Length = 374 |
| >gnl|CDD|163513 TIGR03801, asp_4_decarbox, aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 1e-11
Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 31/155 (20%)
Query: 178 PGDEVIIPAPFWVSYPEMARIAD---------ATPVILPTRISENF-------LLDPKVL 221
GD++ + P + Y E+ + A + + + L DP +
Sbjct: 183 KGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPSI- 241
Query: 222 ESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH-PRLLVLSDEIYEHIIYAPAT 280
+ L + +PSNP +++I IVA P L++L+D++Y +
Sbjct: 242 --------KALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYG--TFVDDF 291
Query: 281 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 315
+ FA LP T+ V FSK F TGWRLG IA
Sbjct: 292 RSLFAELP---YNTIGVYSFSKYFGATGWRLGTIA 323
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1) [Energy metabolism, Amino acids and amines]. Length = 521 |
| >gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 1e-11
Identities = 64/279 (22%), Positives = 120/279 (43%), Gaps = 24/279 (8%)
Query: 96 SVIRLAAGEPDFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYT 154
S ++LA+ E F +P ++ E + + P+ G LR I +KL +
Sbjct: 30 SFVKLASNENPFGCSPRVLDELQKSWLDHALY---PDGGATTLRQTIANKLHVKM----- 81
Query: 155 PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENF 214
+Q+L +G + I AV GD ++ + Y A I + N
Sbjct: 82 -EQVLCGSGLDEVIQIISRAVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVALN---NG 137
Query: 215 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 274
+ D + S + ++++ +C+P+NPTG+ L + ++++ L+V+ + YE++
Sbjct: 138 VYDLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYV 196
Query: 275 IYAPATHTSFASLPGMWER---TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 331
T F + E+ L + FSKA+ + +R+GY G + + N ++ F
Sbjct: 197 -----TAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHEELIEKLNVVRLPF 251
Query: 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 370
SS++QKA A G E+V + R+ F
Sbjct: 252 N--VSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESF 288
|
Length = 366 |
| >gnl|CDD|181651 PRK09105, PRK09105, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 6e-11
Identities = 62/252 (24%), Positives = 99/252 (39%), Gaps = 36/252 (14%)
Query: 80 TVAITDQATALAQAGVSVIRLAAGEPDFDTPVLI---------AEAGINAIREGFT---R 127
A A A A + AA P + V + + A +A R
Sbjct: 19 AAAALGLLAAAAAA----AKRAAAPPAAEGAVFLNANECPLGPSPAARDAAARSAALSGR 74
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
Y +LR+ + GL D ++ G+ + + AVLA SP ++ P
Sbjct: 75 YDLELED-DLRTLFA----AQEGLP--ADHVMAYAGSSEPLNYAVLAFTSPTAGLVTADP 127
Query: 188 FWVSYPEMARIADATPV-ILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 246
+Y R ADA + + + D K + + + L+ +C+P+NPTG+V P
Sbjct: 128 ---TYEAGWRAADAQGAPVAKVPLRADGAHDVKAMLAA-DPNAGLIYICNPNNPTGTVTP 183
Query: 247 KNLLDEIARIVAKHP-RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305
+ +I ++A P ++L DE Y H AP S L + + + FSK +
Sbjct: 184 R---ADIEWLLANKPAGSVLLVDEAYIHFSDAP----SVVDLVAQRKDLIVLRTFSKLYG 236
Query: 306 MTGWRLGYIAGP 317
M G RLG A
Sbjct: 237 MAGMRLGLAAAR 248
|
Length = 370 |
| >gnl|CDD|179869 PRK04635, PRK04635, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 7e-11
Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 12/161 (7%)
Query: 154 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPT-RISE 212
P+QIL S GA ++I + A C PG + I A F +Y A A+ V + ++
Sbjct: 76 APEQILTSRGADEAIELLIRAFCEPGQDSI--ACFGPTYGMYAISAETFNVGVKALPLTA 133
Query: 213 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 272
++ L +E + ++L+ +C+P+NPTG+V + +I +++ P +V+ DE Y
Sbjct: 134 DYQLPLDYIEQ--LDGAKLVFICNPNNPTGTVIDR---ADIEQLIEMTPDAIVVVDEAY- 187
Query: 273 HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 313
I + P S A L + + + SKAFA+ G R G+
Sbjct: 188 -IEFCPE--YSVADLLASYPNLVVLRTLSKAFALAGARCGF 225
|
Length = 354 |
| >gnl|CDD|177876 PLN02231, PLN02231, alanine transaminase | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 1e-10
Identities = 84/340 (24%), Positives = 146/340 (42%), Gaps = 40/340 (11%)
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI-LQAVLAVCSPGDEVIIPA 186
Y+ + G LR AI ++ +G P+ I +++GA ++ + L + S D ++ P
Sbjct: 164 YSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPI 223
Query: 187 PFWVSYPEMARIADATPVILPTRISE--NFLLDPKVLESKLTEKS------RLLILCSPS 238
P + Y A IA ++P + E + L+ L+ +L + R L++ +P
Sbjct: 224 PQYPLYS--ASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPG 281
Query: 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP-ATHTSFASLP---GMWERT 294
NPTG V + +I K L++L+DE+Y+ +Y P SF + G E+
Sbjct: 282 NPTGQVLAEENQRDIVEF-CKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKD 340
Query: 295 LTVNGF---SKAF-AMTGWRLGYIA----GPK-----HFVAA---CNKIQSQFTSGASSI 338
+++ F SK + G R GY+ + VA+ C+ I Q +
Sbjct: 341 ISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVASVNLCSNISGQILASLVMS 400
Query: 339 SQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF--ID 395
K G + A + ++S + + R L + LEGV ++ +GA YLF I
Sbjct: 401 PPKPGDESYESYMAEKDGILSSLAR----RAKTLEDALNSLEGVTCNKAEGAMYLFPRIH 456
Query: 396 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 435
AE ++ C+ LL+ + +VPG FG
Sbjct: 457 LPQKAIKAAEAAKTAPDA-FYCKRLLNATGIVVVPGSGFG 495
|
Length = 534 |
| >gnl|CDD|181255 PRK08153, PRK08153, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR--LLVLSDEIYEHIIYAPATHTSF 284
E + L+ L +P NP GS +P +I + P LLVL DE Y APA +
Sbjct: 154 ENAPLVYLANPDNPMGSWHPA---ADIVAFIEALPETTLLVL-DEAYCET--APAG--AA 205
Query: 285 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGV 344
+ + + FSKA+ + G R+GY G + A +K+++ F G + I+Q A +
Sbjct: 206 PPIDTDDPNVIRMRTFSKAYGLAGARVGYAIGAPGTIKAFDKVRNHF--GMNRIAQAAAL 263
Query: 345 AALGLGYAGGEVVSKMVKAFRER 367
AAL EVV K + A R+R
Sbjct: 264 AALKDQAYLAEVVGK-IAAARDR 285
|
Length = 369 |
| >gnl|CDD|169399 PRK08354, PRK08354, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 29/170 (17%)
Query: 179 GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 238
+VIIP + Y +AR A + P DP+ LE +L E++ ++ C+P+
Sbjct: 77 DRKVIIPRHTYGEYERVARFFAARIIKGP--------NDPEKLE-ELVERNSVVFFCNPN 127
Query: 239 NPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTV 297
NP G Y K L + + + L++ DE + I + S G E + +
Sbjct: 128 NPDGKFYNFKELKPLLDAVEDR--NALLILDEAF--IDFVK----KPESPEG--ENIIKL 177
Query: 298 NGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAAL 347
F+K++ + G R+GY+ G F A ++ ++ G++ G A L
Sbjct: 178 RTFTKSYGLPGIRVGYVKG---FEEAFRSVRMPWSIGST------GYAFL 218
|
Length = 311 |
| >gnl|CDD|173269 PRK14808, PRK14808, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 6e-08
Identities = 59/241 (24%), Positives = 108/241 (44%), Gaps = 29/241 (12%)
Query: 156 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 215
+ + V NGA + I +L D + P + Y A+ A + +P
Sbjct: 77 NNVSVGNGADEIIYVMMLMF----DRSVFFPPTYSCYRIFAKAVGAKFLEVP------LT 126
Query: 216 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII 275
D ++ E + E + I +P+NPTG V+ + +EI RI+ K + L + YE
Sbjct: 127 KDLRIPEVNVGEGDVVFI-PNPNNPTGHVFER---EEIERIL-KTGAFVALDEAYYEF-- 179
Query: 276 YAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA 335
S+ L +E + FSKAF++ R+GY+ + F+ A N+++ F
Sbjct: 180 ----HGESYVDLLKKYENLAVIRTFSKAFSLAAQRIGYVVSSEKFIDAYNRVRLPFN--V 233
Query: 336 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAF-YLFI 394
S +SQ AL E+ + K E R+ + + E+ G ++++ +G F ++F+
Sbjct: 234 SYVSQMFAKVAL----DHREIFEERTKFIVEERERMKSALREM-GYRITDSRGNFVFIFM 288
Query: 395 D 395
+
Sbjct: 289 E 289
|
Length = 335 |
| >gnl|CDD|236009 PRK07392, PRK07392, threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 52/211 (24%), Positives = 88/211 (41%), Gaps = 26/211 (12%)
Query: 118 INAIREGFT--RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 175
I AI+ + R+ P+ ELR A+ + P+ IL NGA + +L
Sbjct: 41 IAAIQSALSALRHYPDPDYRELRLALAQHHQ------LPPEWILPGNGAAE-LLTWAGRE 93
Query: 176 CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKS--RLLI 233
+ V + P + Y R AT LP + + L++ + + L+
Sbjct: 94 LAQLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQLTPNDGLL 153
Query: 234 LCSPSNPTGSVYPKN----LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289
L +P NPTG ++ + LL++ A +V + L + + +I A + + L
Sbjct: 154 LNNPHNPTGKLWSREAILPLLEQFALVVVDEAFMDFLPPDAEQSLIPCLAEYPNLIIL-- 211
Query: 290 MWERTLTVNGFSKAFAMTGWRLGY-IAGPKH 319
R+LT K +++ G RLGY IA P
Sbjct: 212 ---RSLT-----KFYSLPGLRLGYAIAHPDR 234
|
Length = 360 |
| >gnl|CDD|177996 PLN02368, PLN02368, alanine transaminase | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 8/160 (5%)
Query: 124 GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-SPGDEV 182
G Y+ + G +R + ++ +G P+ I +++GA + ++Q + AV D V
Sbjct: 99 GLGAYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGV 158
Query: 183 IIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKS------RLLILCS 236
++P P + Y + T V SEN+ LD L + + R +++ +
Sbjct: 159 LVPVPQYPLYSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIIN 218
Query: 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 276
P NPTG + L EI + RL++L DE+Y+ IY
Sbjct: 219 PGNPTGQCLSEANLREILKF-CYQERLVLLGDEVYQQNIY 257
|
Length = 407 |
| >gnl|CDD|181512 PRK08637, PRK08637, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 50/207 (24%), Positives = 84/207 (40%), Gaps = 27/207 (13%)
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQI---LVSNGAKQSILQAVLAVCS-----PG 179
Y P G ELR K+ EN S + ++ +V+N L L++ + G
Sbjct: 40 YAPPQGIPELRDLWQEKMLRENP-SLSGKKMSLPIVTNA-----LTHGLSLVADLFVDQG 93
Query: 180 DEVIIPAPFWVSYPEMARIA-DATPVILPTRISENFLLDPKVLESKLTEKSR----LLIL 234
D V++P W +Y A V P E+ D L+ L ++IL
Sbjct: 94 DTVLLPDHNWGNYKLTFNTRRGAEIVTYPI-FDEDGGFDTDALKEALQAAYNKGKVIVIL 152
Query: 235 CSPSNPTGSVYPKNLLDEIARIV----AKHPRLLVLSDEIYEHIIYAPATHTS-FASLPG 289
P+NPTG + I + +++ + D+ Y + Y + S FA+L
Sbjct: 153 NFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALAN 212
Query: 290 MWERTLTV--NGFSKAFAMTGWRLGYI 314
+ L V +G +K + G+R+G+I
Sbjct: 213 LHSNILAVKLDGATKEEFVWGFRVGFI 239
|
Length = 388 |
| >gnl|CDD|235440 PRK05387, PRK05387, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 8e-07
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 233 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292
I +P+ PTG P L EI RI+A +P +V+ DE Y + + S L +
Sbjct: 149 IFPNPNAPTGIALP---LAEIERILAANPDSVVVIDEAY--VDFGGE---SAIPLIDRYP 200
Query: 293 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS-GASSISQKAGVAAL 347
L V FSK+ ++ G R+G+ G + A N++++ F S ++Q +AA+
Sbjct: 201 NLLVVQTFSKSRSLAGLRVGFAIGHPELIEALNRVKNSFNSYPLDRLAQAGAIAAI 256
|
Length = 353 |
| >gnl|CDD|215360 PLN02672, PLN02672, methionine S-methyltransferase | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 48/195 (24%), Positives = 79/195 (40%), Gaps = 12/195 (6%)
Query: 75 VKPSKTVAITDQAT-ALAQAGVSVIRLAAGEP----DFDTPVLIAEAGINA-IREGFTRY 128
+ SK + + A AL +A +SV + D D L + + A I E F R
Sbjct: 668 EESSKFIGFSSSARSALKEAELSV-SGSQESSLIHMDVDESFLPVPSAVKASIFESFVRQ 726
Query: 129 TPNAGTLELRSAICHKLKEENGL--SYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 186
+ + R +I +K G + + + + + VL G + PA
Sbjct: 727 NISESETDPRPSILQFIKSNYGFPTDSC-TEFVYGDTSLALFNKLVLCCVQEGGTLCFPA 785
Query: 187 PFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCS-PS-NPTGSV 244
+Y A+ A +PT+ S+ F L K L S L + + S P+ NPTG +
Sbjct: 786 GSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLL 845
Query: 245 YPKNLLDEIARIVAK 259
Y + ++EI + AK
Sbjct: 846 YSNSEIEEILSVCAK 860
|
Length = 1082 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-06
Identities = 41/168 (24%), Positives = 64/168 (38%), Gaps = 23/168 (13%)
Query: 156 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS-YPEMARIADATPVILPTRISENF 214
D+ + + A+LA+ PGDEVI+ A S Y A +A A PV +P +
Sbjct: 18 DKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGYG 77
Query: 215 LLDPKVLE-SKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 273
LD +LE K L+++ + G + P L EI +I ++ +L+L D
Sbjct: 78 GLDVAILEELKAKPNVALIVITPNTTSGGVLVP---LKEIRKIAKEY-GILLLVD----- 128
Query: 274 IIYAPATHTSFAS----LPGMWERTLTVN-GFSKAFAMTGWRLGYIAG 316
A AS + V K + G G +
Sbjct: 129 -----AASAGGASPAPGVLIPEGGADVVTFSLHK--NLGGEGGGVVIV 169
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 4e-06
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 411 ENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGL 462
SE C LL + V LVPG+ F + +RI Y TL+ ++++ + L
Sbjct: 317 MPSEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYCCDTETLKKGLKKLSEFL 368
|
Length = 373 |
| >gnl|CDD|181212 PRK08056, PRK08056, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 9/158 (5%)
Query: 158 ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLD 217
IL NG +SI AV++ P +I+ P + Y + R ++ + L
Sbjct: 75 ILAGNGETESIF-AVVSGLKPRRAMIV-TPGFAEYRRALQQVGCEIRRYSLREADGWQLT 132
Query: 218 PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 277
+LE+ LT L LC+P+NPTG + + LL IA L+L + + I
Sbjct: 133 DAILEA-LTPDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDE 191
Query: 278 PATHTSFASLPGMWE-RTLTVNGFSKAFAMTGWRLGYI 314
A P +W R+LT K +A+ G RLGY+
Sbjct: 192 TGFIPQLADNPHLWVLRSLT-----KFYAIPGLRLGYL 224
|
Length = 356 |
| >gnl|CDD|99740 cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 18/116 (15%)
Query: 158 ILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISE 212
+ VS+G + L L PGDEVI+P+ +V+ + ATPV I P +
Sbjct: 37 VAVSSGT--AALHLALRALGIGPGDEVIVPSFTFVATANAILLLGATPVFVDIDP----D 90
Query: 213 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 268
+ +DP+++E+ +T +++ +I P + G+ +D I I +H L V+ D
Sbjct: 91 TYNIDPELIEAAITPRTKAII---PVHLYGNPAD---MDAIMAIAKRH-GLPVIED 139
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD. Length = 352 |
| >gnl|CDD|236517 PRK09440, avtA, valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 5e-05
Identities = 75/398 (18%), Positives = 138/398 (34%), Gaps = 123/398 (30%)
Query: 127 RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS---ILQAVLAVCSPGDE-- 181
Y G EL A+ L E G + +P I ++NG+ QS L + A
Sbjct: 69 NYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGS-QSAFFYLFNLFAGRRADGSLK 127
Query: 182 -VIIP-APFWVSYPEMARIADATPVILPTRISENFLLDPKVLES---------------- 223
++ P AP ++ Y ADA L+ + S
Sbjct: 128 KILFPLAPEYIGY------ADAG-------------LEEDLFVSYRPNIELLPEGQFKYH 168
Query: 224 ------KLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY----EH 273
+ E + + + P+NPTG+V L+++ + +H + +L D Y
Sbjct: 169 VDFEHLHIDEDTGAICVSRPTNPTGNVLTDEELEKLDALARQH-NIPLLIDNAYGPPFPG 227
Query: 274 IIYAPATHTSFASLPGMW-ERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 332
II++ AT W + SK + G R G + + + A
Sbjct: 228 IIFSEATPL--------WNPNIILCMSLSKL-GLPGVRCGIVIADEEIIEA--------- 269
Query: 333 SGASSISQKAGVAALGLGYAGGEVVSKMVKA--------------FRERRDFLV----KS 374
+S G+ +L G G + ++M+++ +R++ + +
Sbjct: 270 -----LSNMNGIISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRY 324
Query: 375 FGELEGVKMSEPQGAFYL---FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG 431
+ + +P+GA +L F D +E L + L + V +VPG
Sbjct: 325 LPDEP-CLIHKPEGAIFLWLWFKDLPI-------------TTEELYQRLKARG-VLVVPG 369
Query: 432 DAF--GDD-------TCIRISYAASLTTLQAAVERIKK 460
F G D CIR++Y ++ + + +
Sbjct: 370 HYFFPGLDEDWPHAHQCIRMNYVQDDEEIEKGIAILAE 407
|
Length = 416 |
| >gnl|CDD|178069 PLN02450, PLN02450, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 51/205 (24%), Positives = 94/205 (45%), Gaps = 31/205 (15%)
Query: 148 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR-IADATPV-I 205
N +++ P++++++ GA + + + PGD ++P P+ YP R + T V I
Sbjct: 104 GNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPY---YPGFDRDLKWRTGVEI 160
Query: 206 LPT--------RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE-IARI 256
+P +I+E+ L + KL K + +++ +PSNP G+ + L+ + I
Sbjct: 161 VPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFI 220
Query: 257 VAKHPRLLVLSDEIYEHIIYAPATHTSFASL-----------PGMWERTLTVNGFSKAFA 305
AK+ L+ SDEIY ++ F S+ + R V SK
Sbjct: 221 TAKNIHLI--SDEIYSGTVFD---SPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLG 275
Query: 306 MTGWRLGYI-AGPKHFVAACNKIQS 329
+ G+R+G I + + V+A K+ S
Sbjct: 276 LPGFRVGAIYSNDEMVVSAATKMSS 300
|
Length = 468 |
| >gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 178 PGDEVII-PAPF-WVSYP--EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLI 233
PGDE+++ P E+A+ A ++P + ++ LLD LE +T K++L+
Sbjct: 110 PGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIP--LDDDGLLDLDALEKLITPKTKLVA 167
Query: 234 LCSPSNPTGSVYPKNLLDEIARIVAKH 260
L SN TG+V P + EIA + +H
Sbjct: 168 LSHVSNVTGTVNP---VKEIAELAHEH 191
|
Length = 405 |
| >gnl|CDD|226485 COG3977, COG3977, Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 75/368 (20%), Positives = 136/368 (36%), Gaps = 55/368 (14%)
Query: 123 EGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA--VLA-VCSPG 179
E Y G L A+ L+ E G + T I ++NG++ + + A S G
Sbjct: 65 EALCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDG 124
Query: 180 DE--VIIP-APFWVSYPEMARIAD----ATPVI--LPTRISENFLLDPKVLESKLTEKSR 230
E +++P AP ++ Y + D A P I LP + F + E +
Sbjct: 125 TEKKILLPLAPEYIGYADAGLEEDLFVSAKPNIELLP---AGQFKYHVDFEHLHIGESTG 181
Query: 231 LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY----EHIIYAPATHTSFAS 286
+ + P+NPTG+V L ++ + +H L++ D Y II++ AT
Sbjct: 182 AICVSRPTNPTGNVLTDEELAKLDALARQHGIPLII-DNAYGVPFPGIIFSDAT------ 234
Query: 287 LPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAA 346
P E + SK + G R G I + + A + + +
Sbjct: 235 -PLWNENIILCMSLSKL-GLPGSRCGIIIANEKVIQAITNMNGIISLAPGRMGPAIAAEM 292
Query: 347 LGLGYAGGEVVSKMVKAFRERR-----DFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG 401
+ G + ++++ F R L + E + +P+GA +L++ F
Sbjct: 293 IESG-DLLRLSEQVIRPFYRNRVQTTIAILRRYLPEYR-CLIHKPEGAIFLWLWFKDLPI 350
Query: 402 SEAEGFGKIENSESLCRYLLDKAQVALVPGDAF--GDD-------TCIRISYAASLTTLQ 452
+ E + + L V +VPG F G D C+R++Y ++
Sbjct: 351 TTEELYQR-----------LKARGVLMVPGHYFFPGLDKEWPHTHQCMRMNYVPEPEKIE 399
Query: 453 AAVERIKK 460
V + +
Sbjct: 400 KGVAILAE 407
|
Length = 417 |
| >gnl|CDD|102370 PRK06425, PRK06425, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 3e-04
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 265
LP + N +P++L + L+ + SP NP G++ ++ L I+ I K LL
Sbjct: 106 LPFNLINN---NPEILNNY---NFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLF 159
Query: 266 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH 319
+ DE + I + P L + + +K + R+GYIA +
Sbjct: 160 I-DEAF--IDFVPNRAEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDDY 210
|
Length = 332 |
| >gnl|CDD|216261 pfam01041, DegT_DnrJ_EryC1, DegT/DnrJ/EryC1/StrS aminotransferase family | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 4e-04
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 30/122 (24%)
Query: 158 ILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISE 212
+ VS+G S L L PGDEVI+PA +V+ ATPV + P +
Sbjct: 43 LAVSSGT--SALHLALRALGIGPGDEVIVPAFTFVATANAVLQLGATPVFVDVDP----D 96
Query: 213 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNL------LDEIARIVAKHPRLLVL 266
+ +DP +E+ +T +++ ++ P +L +D I I A+H L V+
Sbjct: 97 TYNIDPAAIEAAITPRTKAIM------------PVHLYGQPADMDAIRAIAAEH-GLPVI 143
Query: 267 SD 268
D
Sbjct: 144 ED 145
|
The members of this family are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA, StsC and StsS. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase EC:2.6.1.50, which catalyzes the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin. Length = 362 |
| >gnl|CDD|185378 PRK15481, PRK15481, transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 5e-04
Identities = 50/234 (21%), Positives = 88/234 (37%), Gaps = 52/234 (22%)
Query: 91 AQAGVSVIRLAAGEPD--------------FDTPVLIAEAGINA-----IREGFTRYTPN 131
G + LA G PD TP L +A ++ P
Sbjct: 81 GDPGTPLHDLAGGNPDPQRLPDLSRYFARLSRTPRLYGDAPVSPELHAWAARWLRDDCPV 140
Query: 132 AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS 191
A ++L ++GA +I + + A PGD V + P ++S
Sbjct: 141 AFEIDL-----------------------TSGAIDAIERLLCAHLLPGDSVAVEDPCFLS 177
Query: 192 YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS--NPTGSVYPKNL 249
M R A + + +E + P+ LE L + +R +IL +P NPTG
Sbjct: 178 SINMLRYAGFSASPVSVD-AEG--MQPEKLERALAQGARAVIL-TPRAHNPTGCSLSARR 233
Query: 250 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 303
+ ++A++P++LV+ D+ + + +P +P +R + SKA
Sbjct: 234 AAALRNLLARYPQVLVIIDDHFALLSSSPYHSV----IPQTTQRWALIRSVSKA 283
|
Length = 431 |
| >gnl|CDD|236128 PRK07908, PRK07908, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 6e-04
Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 28/168 (16%)
Query: 154 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI--S 211
TPD++L+ GA + A+LA P ++ F + PE A A PV R+
Sbjct: 74 TPDEVLLLAGAAEGF--ALLARLRPRRAAVVHPSF--TEPEAALRAAGIPV---HRVVLD 126
Query: 212 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 271
F LDP + + + + L+++ +P+NPT ++P L + R R+LV+ DE +
Sbjct: 127 PPFRLDP----AAVPDDADLVVIGNPTNPTSVLHPAEQLLALRR----PGRILVV-DEAF 177
Query: 272 EHIIYAPATHTSFA--SLPGMWE-RTLTVNGFSKAFAMTGWRLGYIAG 316
+ P S A LPG+ R+LT K +++ G R+GY G
Sbjct: 178 ADAV--PGEPESLAGDDLPGVLVLRSLT-----KTWSLAGLRVGYALG 218
|
Length = 349 |
| >gnl|CDD|223476 COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 7e-04
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 18/116 (15%)
Query: 158 ILVSNGAKQSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISE 212
+ VS+G + L L + PGDEVI+P+ +V+ + A PV I P +
Sbjct: 53 VAVSSGT--AALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDP----D 106
Query: 213 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 268
+DP ++E+ +T +++ +I P + G +D I + +H L V+ D
Sbjct: 107 TLNIDPDLIEAAITPRTKAII---PVHLAGQPCD---MDAIMALAKRH-GLPVIED 155
|
Length = 374 |
| >gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 18/121 (14%)
Query: 155 PDQILVSNGAKQSI---LQAVLAVCSPGDEVII-----PAPF--WVSYPEMARIADATPV 204
++I+ ++G ++I ++ PGDE+++ A W E+A+ AT
Sbjct: 61 DEEIIFTSGTTEAINLVAISLGRSLKPGDEILVTEMEHHANLVPWQ---ELAKRTGATVR 117
Query: 205 ILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLL 264
++P + N LLD LE LT +++L+ + SN TG+V P ++EI ++ ++ L+
Sbjct: 118 VIP--VDPNGLLDLDALEKLLTPRTKLVAITHVSNVTGTVNP---VEEIGKLAHEYGALV 172
Query: 265 V 265
V
Sbjct: 173 V 173
|
This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370 |
| >gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 11/117 (9%)
Query: 159 LVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL-PTRISENFL-- 215
+ NG S +LAVC PGD+++I S ++ A PV L P R +
Sbjct: 79 FLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNPYYGIAG 138
Query: 216 -LDPKVLESKLTE--KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 269
+ P+ + L E ++ ++ +P G Y L +I A H L VL DE
Sbjct: 139 GIPPETFKKALIEHPDAKAAVITNP-TYYGICYN---LRKIVE-EAHHRGLPVLVDE 190
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. Length = 294 |
| >gnl|CDD|224893 COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 29/152 (19%)
Query: 160 VSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI--ADATPVILPTRISENFLL- 216
V NG + + AV +PGD+V++ + A ATPV L + + +
Sbjct: 91 VVNGTSTANKAVINAVLTPGDKVLVDRN--CHKSIHHGLILAGATPVYLEPSRNPLYGII 148
Query: 217 ---DPKVLESKLTEK---SRLLILCSPSNPT--GSVY-PKNLLDEIARIVAK------HP 261
+ + L +L ++ +NPT G Y + +++ + A HP
Sbjct: 149 GGIPLETFKEALLAHPDAEKLAVI---TNPTYDGVCYNLRKIVELLHHYGAWVLYDEAHP 205
Query: 262 RLLVLSDEIYEH------IIYAPATHTSFASL 287
S + E +TH A+L
Sbjct: 206 AHFDFSPMLPESALNGGADFVTQSTHKLLAAL 237
|
Length = 557 |
| >gnl|CDD|183263 PRK11658, PRK11658, UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 21/86 (24%)
Query: 163 GAKQSILQAVLAVCS---------------PGDEVIIPAPFWVSYPEMARIADATPVILP 207
G + +I AV S PGDEVI P+ WVS M + ATPV++
Sbjct: 47 GNQHAI-----AVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMVD 101
Query: 208 TRISENFLLDPKVLESKLTEKSRLLI 233
+ ++ P+ +E+ +T +++ +I
Sbjct: 102 VD-RDTLMVTPEAIEAAITPRTKAII 126
|
Length = 379 |
| >gnl|CDD|201705 pfam01276, OKR_DC_1, Orn/Lys/Arg decarboxylase, major domain | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.004
Identities = 36/138 (26%), Positives = 54/138 (39%), Gaps = 19/138 (13%)
Query: 160 VSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL-PTRISENFL--- 215
V NG + +AVC+PGD V+I S ++ ATPV L PTR + +
Sbjct: 87 VVNGTSGANKTVGMAVCTPGDTVLIDRNCHKSIHHALMMSGATPVYLEPTRNAYGIIGGI 146
Query: 216 ----LDPKVLESKLTE--KSRLLILCSPSNPT--GSVYPKNLLDEIARIVAKHPRLLVLS 267
+ ++ L E ++ L +N T G++Y EI H +L
Sbjct: 147 PLHEFQEETIKEALAEVPPAKGPRLAVITNGTYDGTIYN---AKEIVDT-LGHLSDYILF 202
Query: 268 DE---IYEHIIYAPATHT 282
D YE I A +
Sbjct: 203 DSAWVGYEQFIPIYADAS 220
|
Length = 417 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 471 | |||
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 100.0 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 100.0 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 100.0 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 100.0 | |
| PRK08068 | 389 | transaminase; Reviewed | 100.0 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 100.0 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 100.0 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 100.0 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 100.0 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06855 | 433 | aminotransferase; Validated | 100.0 | |
| PRK09148 | 405 | aminotransferase; Validated | 100.0 | |
| PLN02187 | 462 | rooty/superroot1 | 100.0 | |
| PRK07682 | 378 | hypothetical protein; Validated | 100.0 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PRK07337 | 388 | aminotransferase; Validated | 100.0 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02656 | 409 | tyrosine transaminase | 100.0 | |
| PRK07324 | 373 | transaminase; Validated | 100.0 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 100.0 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 100.0 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 100.0 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 100.0 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 100.0 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 100.0 | |
| PRK07683 | 387 | aminotransferase A; Validated | 100.0 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 100.0 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 100.0 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 100.0 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 100.0 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 100.0 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02231 | 534 | alanine transaminase | 100.0 | |
| PRK07777 | 387 | aminotransferase; Validated | 100.0 | |
| PRK08175 | 395 | aminotransferase; Validated | 100.0 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 100.0 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 100.0 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 100.0 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 100.0 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02368 | 407 | alanine transaminase | 100.0 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 100.0 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 100.0 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 100.0 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 100.0 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 100.0 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 100.0 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 100.0 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 100.0 | |
| PLN02397 | 423 | aspartate transaminase | 100.0 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 100.0 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 100.0 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 100.0 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 100.0 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 100.0 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 100.0 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 100.0 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 100.0 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 100.0 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 100.0 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 100.0 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 100.0 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 100.0 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 100.0 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 100.0 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 100.0 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 100.0 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 100.0 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 100.0 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 100.0 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 100.0 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 100.0 | |
| PLN02822 | 481 | serine palmitoyltransferase | 100.0 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 100.0 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 100.0 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 100.0 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 100.0 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 100.0 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 100.0 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 100.0 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 100.0 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 100.0 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 100.0 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 100.0 | |
| PLN02483 | 489 | serine palmitoyltransferase | 100.0 | |
| PLN02721 | 353 | threonine aldolase | 100.0 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 100.0 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 100.0 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 100.0 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 100.0 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 100.0 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 100.0 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.98 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.98 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.98 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.98 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.98 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.97 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.97 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.97 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.97 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.97 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.97 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.97 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.97 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.97 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.97 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.97 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.97 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.97 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.97 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.96 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.96 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.96 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.96 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.96 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.96 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.96 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.96 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.96 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.96 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.96 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.96 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.96 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.96 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.96 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.96 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.96 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.95 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.95 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.95 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.95 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.95 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.95 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.95 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.95 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 99.95 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.95 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.95 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.95 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.95 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.94 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.94 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.94 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.94 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.94 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.94 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.94 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.94 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.94 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.94 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.93 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.93 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.93 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.93 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.93 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.93 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.93 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.93 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.93 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.93 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 99.93 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.93 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.93 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.93 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.93 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.92 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.92 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.92 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.92 | |
| PLN02651 | 364 | cysteine desulfurase | 99.92 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.92 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.92 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.92 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.92 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.92 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.92 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.92 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.92 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.92 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.91 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.91 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.9 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.9 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.9 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.9 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.9 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.9 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.9 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.9 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.89 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.89 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.89 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.89 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.89 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.89 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.89 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.89 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.89 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.89 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.89 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.88 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.88 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.88 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.88 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.87 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.87 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.87 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.87 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.87 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.87 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.87 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.86 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.86 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.86 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.85 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.85 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.85 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.84 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.84 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.84 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.84 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.84 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.84 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.83 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.83 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.83 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.82 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.82 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.82 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.82 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.81 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.81 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.81 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.81 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.81 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 99.8 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.8 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.8 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.8 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.8 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.8 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.8 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.79 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.79 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.79 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.79 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.79 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.79 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.78 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.78 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.78 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.78 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.77 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.77 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.77 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.77 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.77 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.76 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.76 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.76 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.76 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.76 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.76 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.76 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.76 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.76 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.75 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.75 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.75 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.75 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.75 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.75 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.75 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.75 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.74 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.74 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.74 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.73 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.73 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.73 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.73 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.72 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.72 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.71 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.71 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.71 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.7 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.7 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.69 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.69 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.69 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.69 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.69 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.68 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.68 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.67 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.67 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.67 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.64 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.64 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.64 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.64 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.63 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.63 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.63 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.63 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.62 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.62 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.61 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 99.6 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.58 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.57 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.57 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.57 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.56 | |
| PLN02263 | 470 | serine decarboxylase | 99.56 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 99.54 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.54 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.52 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.52 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.51 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.5 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 99.49 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.45 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 99.45 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.43 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 99.42 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.42 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.39 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 99.37 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.31 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.29 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 99.24 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 99.11 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 99.1 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.08 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 99.07 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 99.06 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.05 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 98.96 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 98.87 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 98.84 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 98.81 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.62 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 98.61 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 98.52 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 98.43 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 98.42 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 97.76 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 97.57 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 97.32 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.31 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 96.95 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 96.46 | |
| PLN02591 | 250 | tryptophan synthase | 88.81 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 86.0 | |
| COG2102 | 223 | Predicted ATPases of PP-loop superfamily [General | 85.18 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 83.54 |
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-70 Score=544.06 Aligned_cols=358 Identities=43% Similarity=0.726 Sum_probs=333.7
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-EEEeCChHHHHHHHHH
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQ-ILVSNGAKQSILQAVL 173 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~-i~it~G~~~al~~~~~ 173 (471)
.++|+|++|+|++++|+.+.+++.+++.++..+|++..|+++||++|++++++++|..+++++ |++|+|++++|..++.
T Consensus 28 ~~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~ 107 (393)
T COG0436 28 EDVIDLSIGEPDFPTPEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFL 107 (393)
T ss_pred CCEEEeCCCCCCCCCCHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHH
Confidence 479999999999999999999999999876447889999999999999999999998888876 9999999999999999
Q ss_pred HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCC-CCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHH
Q 012095 174 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS-ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 252 (471)
Q Consensus 174 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~ 252 (471)
++++|||+|++++|+|++|..+++.+|++++.++++.+ ++|.+|++.|++++++++|+|++|+||||||.+++++++++
T Consensus 108 a~~~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NPTGav~~~~~l~~ 187 (393)
T COG0436 108 ALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKA 187 (393)
T ss_pred HhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCCCCcCcCCCHHHHHH
Confidence 99999999999999999999999999999999998765 48999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcC-HHHHHHHHHHHhcc
Q 012095 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQF 331 (471)
Q Consensus 253 i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~-~~~i~~l~~~~~~~ 331 (471)
|+++|++| +++||+||+|.++.|++..+.++.++....+++|+++||||.|+|+|||+||++++ +++++.+.+++...
T Consensus 188 i~~~a~~~-~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~~l~~~~~~~~~~~ 266 (393)
T COG0436 188 IVELAREH-DIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPEELIAALRKLKSYL 266 (393)
T ss_pred HHHHHHHc-CeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEeecChHHHHHHHHHHHHhc
Confidence 99999999 99999999999999998666777777665689999999999999999999999999 89999999999999
Q ss_pred cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC-CCcceEEeEecCCccCCcccCCCCC
Q 012095 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKI 410 (471)
Q Consensus 332 ~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~-p~~g~~~~~~~~~~~~~~~~~~~~~ 410 (471)
.+|++.+.|.++.++|+.... ..+++.+++.|++||+.+.+.|.+++|+.+.. |+|+||+|++++..
T Consensus 267 ~~~~~~~~Q~aa~~aL~~~~~-~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~Ga~Y~~~~i~~~----------- 334 (393)
T COG0436 267 TSCAPTPAQYAAIAALNGPQS-DEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPEL----------- 334 (393)
T ss_pred ccCCCHHHHHHHHHHhcCccc-hHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCCCeeEEEEeecCCC-----------
Confidence 999999999999999997422 46888899999999999999999998899988 89999999999864
Q ss_pred CCHHHHHHHHHHcCCEEEECCCCCCCC---CcEEEEeecCHHHHHHHHHHHHHHHHhh
Q 012095 411 ENSESLCRYLLDKAQVALVPGDAFGDD---TCIRISYAASLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 411 ~~~~~l~~~Ll~~~gV~v~pg~~f~~~---~~iRis~~~~~e~i~~~~~~l~~~l~~~ 465 (471)
.++.+|+.+|++++||.++||+.||.+ ++||+|++.+.+++++++++|.++++.+
T Consensus 335 ~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~~~~~l~~a~~rl~~~~~~~ 392 (393)
T COG0436 335 LDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLATSEETLEEALRRLARFLAEY 392 (393)
T ss_pred CCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEecCHHHHHHHHHHHHHHHHhc
Confidence 289999999999999999999999975 7999999998899999999999998764
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-62 Score=466.00 Aligned_cols=384 Identities=38% Similarity=0.644 Sum_probs=336.9
Q ss_pred cccccccCCChHHHHHHHHHHHHhcCCCeEE-cCCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHH
Q 012095 69 SPRVNAVKPSKTVAITDQATALAQAGVSVIR-LAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLK 146 (471)
Q Consensus 69 s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~-l~~g~~~~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~ 146 (471)
+.++...+++.+.++..++.+ .+ ..+ |+.|.|++++|+.+.+++.+++.+. .++|++..|.++|+++|++.++
T Consensus 9 ~~~l~~~~~~vw~e~~~la~e---~~--~~~~LgqGfp~~~~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~s 83 (420)
T KOG0257|consen 9 NRNLSTSKPYVWTEINRLAAE---HK--VPNPLGQGFPDFPPPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYS 83 (420)
T ss_pred cccccccCCcHHHHHHHHHHh---cC--CCCcccCCCCCCCCcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHH
Confidence 344555556656565554433 22 233 9999999999999999999998874 7899999999999999999999
Q ss_pred HHhCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCC------CCCCCcCCHH
Q 012095 147 EENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR------ISENFLLDPK 219 (471)
Q Consensus 147 ~~~g~~~~~-~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~------~~~~~~ld~e 219 (471)
..+|....+ ++|++|.|+.++|..++++++++||+|++.+|.|..|...++++|+++++|+.. ..++|.+|.+
T Consensus 84 e~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~ 163 (420)
T KOG0257|consen 84 EFYGGLLDPDDEVLVTAGANEAISSALLGLLNPGDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPE 163 (420)
T ss_pred HHhccccCCcccEEEecCchHHHHHHHHHHcCCCCEEEEecCcchhhhhHHhhcCCcceeeccccccccccCccccCChH
Confidence 988877666 579999999999999999999999999999999999999999999999999998 5677999999
Q ss_pred HHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEec
Q 012095 220 VLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 299 (471)
Q Consensus 220 ~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S 299 (471)
+++.+++++||+|++|+||||||.++|+++|++|+++|++| |++||.||+|..+.|++..+..+..++++++++|.++|
T Consensus 164 ~le~~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~-~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS 242 (420)
T KOG0257|consen 164 ELESKITEKTKAIILNTPHNPTGKVFSREELERIAELCKKH-GLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGS 242 (420)
T ss_pred HHHhhccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHC-CEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEecc
Confidence 99999999999999999999999999999999999999999 99999999999999999889999999999999999999
Q ss_pred CCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCC-----hHHHHHHHHHHHHHHHHHHHH
Q 012095 300 FSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAG-----GEVVSKMVKAFRERRDFLVKS 374 (471)
Q Consensus 300 ~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~-----~~~~~~~~~~~~~~r~~l~~~ 374 (471)
|||+||++|||+||+++++.++..+..++....+..+++.|.|..+++..++.. ..++.++.+.|+++|+.|.+.
T Consensus 243 ~gKtf~~TGWrlGW~igp~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~ 322 (420)
T KOG0257|consen 243 FGKTFGVTGWRLGWAIGPKHLYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKA 322 (420)
T ss_pred ccceeeeeeeeeeeeechHHhhhhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988764310 155677999999999999999
Q ss_pred hcCCCCCeeeCCCcceEEeEecCCcc-CCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCC-------CcEEEEeec
Q 012095 375 FGELEGVKMSEPQGAFYLFIDFSTYY-GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD-------TCIRISYAA 446 (471)
Q Consensus 375 L~~~~g~~~~~p~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~-------~~iRis~~~ 446 (471)
|.++ |++++.|+|++|+|++++... .+..++.....++-.++.+|+++.||.+.|++.||.+ +++|++++.
T Consensus 323 L~~l-g~~v~~p~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~~~k 401 (420)
T KOG0257|consen 323 LEEL-GLKVTGPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFCFCK 401 (420)
T ss_pred HHhc-CCccccCCCceEEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHHHHh
Confidence 9999 999999999999999998211 1112222223356788999999999999999999964 468888888
Q ss_pred CHHHHHHHHHHHH
Q 012095 447 SLTTLQAAVERIK 459 (471)
Q Consensus 447 ~~e~i~~~~~~l~ 459 (471)
+++.++.++++|+
T Consensus 402 ~~~~L~~a~e~l~ 414 (420)
T KOG0257|consen 402 ADETLRKAIERLK 414 (420)
T ss_pred hHHHHHHHHHHHh
Confidence 9899999999988
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-60 Score=479.95 Aligned_cols=381 Identities=23% Similarity=0.387 Sum_probs=330.6
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLK 146 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~ 146 (471)
+++++..++.+.+..+.......+..|+++|+|+.|+|++++|+.+.+++.+.+... ..+|++..|.++||+++++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~ 82 (388)
T PRK07366 3 FAQRLQPLQSNVFADMDRAKAQARAAGKELIDLSLGSSDLPAPAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYE 82 (388)
T ss_pred hhhhhhcCCccHHHHHHHHHHHHHhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHH
Confidence 455666666666666666666666788899999999999999999999999877543 4679888999999999999999
Q ss_pred HHhCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhh
Q 012095 147 EENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL 225 (471)
Q Consensus 147 ~~~g~~~~~~-~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l 225 (471)
+.+|++++++ +|++|+|+++++..+++++++|||+|++++|+|+.|...++..|++++.+|++.+++|.+|++++++.+
T Consensus 83 ~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~ 162 (388)
T PRK07366 83 QRFGLAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEV 162 (388)
T ss_pred HhhCCcCCCcCeEEECCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhh
Confidence 9999989998 799999999999999999999999999999999999999999999999999987777889999998888
Q ss_pred ccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCC-ccccccCCCCCCceEEEecCCccc
Q 012095 226 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT-HTSFASLPGMWERTLTVNGFSKAF 304 (471)
Q Consensus 226 ~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~ 304 (471)
.+++|+|++|+||||||.++|.+++++|+++|++| +++||+||+|.++.|++.. .+++..++...+++|+++||||.|
T Consensus 163 ~~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~ 241 (388)
T PRK07366 163 LAQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQH-DLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSY 241 (388)
T ss_pred cccceEEEEeCCCCCCCccCCHHHHHHHHHHHHHc-CeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeeccccc
Confidence 77899999999999999999999999999999999 9999999999999987643 445666654456799999999999
Q ss_pred CccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeee
Q 012095 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (471)
Q Consensus 305 g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~ 384 (471)
|++|+|+||+++++++++.+.+.+..+..+.++..+.++.++|.. .++|++++++.|+++|+.+.+.|+++ |+.+.
T Consensus 242 g~~GlRiG~~v~~~~li~~l~~~~~~~~~~~~~~~~~~a~~~l~~---~~~~l~~~~~~~~~~r~~l~~~L~~~-~~~~~ 317 (388)
T PRK07366 242 NMGGFRIGFAIGNAQLIQALRQVKAVVDFNQYRGILNGAIAALTG---PQATVQQTVQIFRQRRDAFINALHQI-GWPVP 317 (388)
T ss_pred CCcchhheehcCCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHC-CCccc
Confidence 999999999999999999999888777666655555566666654 37899999999999999999999988 88878
Q ss_pred CCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHH
Q 012095 385 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGL 462 (471)
Q Consensus 385 ~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~l 462 (471)
.|++|+|+|+++++... .++.++++.|++++||.+.||+.|+. ++|+||+++.+.+++++++++|++++
T Consensus 318 ~p~~g~f~~~~~~~~~~---------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~l~rl~~~l 388 (388)
T PRK07366 318 LPEATMYVWAKLPEPWQ---------GNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVHDPDILEEAVERIAAFL 388 (388)
T ss_pred CCCeeEEEEEECCcccC---------CCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecCCHHHHHHHHHHHHHhC
Confidence 89999999999985321 14678888888778999999999975 47999999999999999999998763
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-59 Score=477.67 Aligned_cols=376 Identities=32% Similarity=0.602 Sum_probs=334.7
Q ss_pred cccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHH
Q 012095 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLK 146 (471)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~ 146 (471)
.+++++..+..+.+..+.+.+ .+.++|+|+.|+|++++|+.+.+++.+++.++..+|++..|.++||++++++++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~l~~G~P~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~ 105 (413)
T PLN00175 31 QVAKRLEKFKTTIFTQMSSLA-----IKHGAINLGQGFPNFDGPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFK 105 (413)
T ss_pred chhHHhhcCCCCHHHHHHHHh-----hcCCeEecCCCCCCCCCCHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHH
Confidence 357778888888776655443 234799999999999999999999999887766889999999999999999999
Q ss_pred HHhCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhh
Q 012095 147 EENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL 225 (471)
Q Consensus 147 ~~~g~~~~~~-~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l 225 (471)
+.+|++++++ +|++|+|+++++..++.++++|||+|++++|+|..|...++..|++++.++++.++ |.+|++.|++++
T Consensus 106 ~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~~~~l~~~~ 184 (413)
T PLN00175 106 KDTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPD-FAVPEDELKAAF 184 (413)
T ss_pred HHhCCCCCCCCCEEEeCCHHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEEECCccc-CCCCHHHHHHhc
Confidence 9999988887 79999999999999999999999999999999999999999999999999997544 889999999999
Q ss_pred ccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccC
Q 012095 226 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305 (471)
Q Consensus 226 ~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 305 (471)
.+++|+|++++||||||.++|.+++++|+++|++| +++||+||+|.++.|++. +.++.++++..+++|+++||||.|+
T Consensus 185 ~~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~-~~~ii~De~Y~~l~~~~~-~~s~~~~~~~~~~vi~i~SfSK~~~ 262 (413)
T PLN00175 185 TSKTRAILINTPHNPTGKMFTREELELIASLCKEN-DVLAFTDEVYDKLAFEGD-HISMASLPGMYERTVTMNSLGKTFS 262 (413)
T ss_pred CcCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHc-CcEEEEecccCccccCCc-ccChhhCCCCcCcEEEEecchhhcc
Confidence 88999999999999999999999999999999999 999999999999998653 4456666655689999999999999
Q ss_pred ccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC
Q 012095 306 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385 (471)
Q Consensus 306 ~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~ 385 (471)
++|||+||+++++++++.+........++++.+.|.++..+|.. .+.|+++.++.|+++++++.+.|.+. |+.+..
T Consensus 263 ~~G~RiG~~v~~~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 338 (413)
T PLN00175 263 LTGWKIGWAIAPPHLTWGVRQAHSFLTFATATPMQWAAVAALRA---PESYYEELKRDYSAKKDILVEGLKEV-GFKVYP 338 (413)
T ss_pred CcchheeeeEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHC-CCeecC
Confidence 99999999999999999999888777888999999999999986 46789999999999999999999998 899999
Q ss_pred CCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-----CCcEEEEeecCHHHHHHHHHHHHH
Q 012095 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-----DTCIRISYAASLTTLQAAVERIKK 460 (471)
Q Consensus 386 p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~-----~~~iRis~~~~~e~i~~~~~~l~~ 460 (471)
|+||||+|++++.. + ..++.+|+++|++++||.+.||+.|+. +++|||+++.+++++++++++|.+
T Consensus 339 p~g~~f~~~~~~~~-~--------~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~~~e~l~~~~~rL~~ 409 (413)
T PLN00175 339 SSGTYFVMVDHTPF-G--------FENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCKDEETLRAAVERMKT 409 (413)
T ss_pred CCeeEEEEEecccc-C--------CCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcCCHHHHHHHHHHHHH
Confidence 99999999998531 0 115679999999888999999999852 369999999999999999999999
Q ss_pred HHH
Q 012095 461 GLL 463 (471)
Q Consensus 461 ~l~ 463 (471)
+++
T Consensus 410 ~~~ 412 (413)
T PLN00175 410 KLK 412 (413)
T ss_pred HHh
Confidence 876
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-59 Score=474.11 Aligned_cols=376 Identities=26% Similarity=0.478 Sum_probs=334.5
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLK 146 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~ 146 (471)
+++++....++.+.++...+.+....++++|+|+.|+|++++++.+.+++.+.+.. ....|+ ..|..+||++|+++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~y~-~~G~~~lr~aia~~~~ 83 (399)
T PRK07681 5 LATRMKAFQSSIFSELGAYKKEKIAAGHKMIDLSIGNPDMPPADFVREEMVHTANQKESYGYT-LSGIQEFHEAVTEYYN 83 (399)
T ss_pred HhHHHhhcCccHHHHHHHHHHHhhhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhccccCCCC-CCCcHHHHHHHHHHHH
Confidence 45667777777777777666666566788999999999998899999999887754 234563 5899999999999999
Q ss_pred HHhCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhh
Q 012095 147 EENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL 225 (471)
Q Consensus 147 ~~~g~~~~~-~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l 225 (471)
+.+|+++++ ++|++|+|+++++..++.+++++||.|++++|+|+.|...++..|++++.+|++++++|.+|++++++++
T Consensus 84 ~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~ 163 (399)
T PRK07681 84 NTHNVILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEI 163 (399)
T ss_pred HHhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhc
Confidence 999999998 8999999999999999999999999999999999999999999999999999987778899999999988
Q ss_pred ccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccC
Q 012095 226 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305 (471)
Q Consensus 226 ~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 305 (471)
.+++++|++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++....++.+++...+++|+++||||.||
T Consensus 164 ~~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~-~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 242 (399)
T PRK07681 164 ADKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKH-NIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYS 242 (399)
T ss_pred cccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHc-CeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccC
Confidence 88899999999999999999999999999999999 99999999999999876555566666554578999999999999
Q ss_pred ccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC
Q 012095 306 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385 (471)
Q Consensus 306 ~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~ 385 (471)
++|+|+||+++++++++.+.........+++.+.|.++..+|.+ ...++++.++.++++++.+.+.|++. |+++..
T Consensus 243 ~~GlRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 318 (399)
T PRK07681 243 LAGSRIGYMIGNEEIVRALTQFKSNTDYGVFLPIQKAACAALRN---GAAFCEKNRGIYQERRDTLVDGFRTF-GWNVDK 318 (399)
T ss_pred CccceeEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccC
Confidence 99999999999999999999887766778999999999999986 35789999999999999999999988 888878
Q ss_pred CCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHH
Q 012095 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKK 460 (471)
Q Consensus 386 p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~ 460 (471)
|.+|+|+|++++... ++.++++.|++++||.+.||..|+. ++++||+++.+++++++++++|++
T Consensus 319 p~~g~f~~~~l~~~~-----------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~l~~l~~ 384 (399)
T PRK07681 319 PAGSMFVWAEIPKGW-----------TSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQDEEVLQQAVENIRN 384 (399)
T ss_pred CCeeeEEEEECCCCC-----------CHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 999999999998532 6788999999877999999999875 479999999988999999999988
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-59 Score=487.84 Aligned_cols=391 Identities=25% Similarity=0.412 Sum_probs=332.2
Q ss_pred ccccccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCC---CCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHH
Q 012095 64 VDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP---DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSA 140 (471)
Q Consensus 64 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~---~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ 140 (471)
+++.+++++.++.++....+...+..++..|+++|+|+.|+| ++++|+.+.+++.+++.. ..+|++..|..+||++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~-~~~Y~~~~G~~~lRea 193 (517)
T PRK13355 115 RTFKKSHKLDNVLYDVRGPVVDEANRMEAAGTHILKLNIGNPAPFGFRTPDEVVYDMAQQLTD-TEGYSDSKGLFSARKA 193 (517)
T ss_pred cCCChhHHhhccCccHHHHHHHHHHHHHHcCCCeEEecCcCCCcCCCCCCHHHHHHHHHHhhc-CCCCCCCcChHHHHHH
Confidence 446688999999998888888888888888999999999998 577799999999888764 5679999999999999
Q ss_pred HHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHH
Q 012095 141 ICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKV 220 (471)
Q Consensus 141 ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~ 220 (471)
|+++++++++..+++++|++|+|+++++..++.+++++||+|++++|+|+.|...++..|++++.++++++++|.+|+++
T Consensus 194 ia~~~~~~~~~~~~~~~I~it~G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~ 273 (517)
T PRK13355 194 IMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDD 273 (517)
T ss_pred HHHHHHhcCCCCCChhHEEEeCcHHHHHHHHHHHhCCCCCEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHH
Confidence 99999887766689999999999999999999999999999999999999999999999999999999887789999999
Q ss_pred HHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecC
Q 012095 221 LESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF 300 (471)
Q Consensus 221 l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 300 (471)
+++++++++|+|+++|||||||.+++.+++++|+++|++| +++||+||+|.++.|++..+.++..+.. ...+++++||
T Consensus 274 l~~~~~~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~-~~~ii~DE~Y~~~~~~~~~~~s~~~~~~-~~~vi~~~S~ 351 (517)
T PRK13355 274 IRSKITSRTKAIVIINPNNPTGALYPREVLQQIVDIAREH-QLIIFSDEIYDRLVMDGLEHTSIASLAP-DLFCVTFSGL 351 (517)
T ss_pred HHHhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHc-CcEEEEehhhhhhcCCCCCcccHHHhCC-CCeEEEEecc
Confidence 9999999999999999999999999999999999999999 9999999999999998755566655533 2457888999
Q ss_pred CcccCccchhheeeEc--CHHH----HHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHH
Q 012095 301 SKAFAMTGWRLGYIAG--PKHF----VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 374 (471)
Q Consensus 301 SK~~g~~G~R~G~v~~--~~~~----i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~ 374 (471)
||.|+++|||+||+++ ++++ ++.+... .....+++.++|.++..+|.......+++...+. +.++|+++.+.
T Consensus 352 SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~-~~~~r~~l~~~ 429 (517)
T PRK13355 352 SKSHMIAGYRIGWMILSGNKRIAKDYIEGLNML-ANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGR-VYEQRELVYNA 429 (517)
T ss_pred hhhccCcccceEEEEeeCchhhHHHHHHHHHHH-hcCcCCcChHHHHHHHHHhcCCccHHHHHHHHHH-HHHHHHHHHHH
Confidence 9999999999999994 4544 4444333 3344678999999999999642112456666544 44568999999
Q ss_pred hcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC--CCCcEEEEeecCHHHHH
Q 012095 375 FGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--DDTCIRISYAASLTTLQ 452 (471)
Q Consensus 375 L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~--~~~~iRis~~~~~e~i~ 452 (471)
|++++|+++.+|+|+||+|++++... ..+.++.+++..++++.||.++||+.|+ .++||||+|+.++++|+
T Consensus 430 L~~~~g~~~~~p~g~fy~~~~l~~~~-------~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~~~~~~l~ 502 (517)
T PRK13355 430 LNAIPGISAVKPKAAFYIFPKIDVKK-------FNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYLPRLEDLE 502 (517)
T ss_pred HhcCCCcccCCCCeeeEEEeecCccc-------CCCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeCCCHHHHH
Confidence 99998999999999999999987420 0012566788888888899999999997 36899999988999999
Q ss_pred HHHHHHHHHHHhhC
Q 012095 453 AAVERIKKGLLTLR 466 (471)
Q Consensus 453 ~~~~~l~~~l~~~~ 466 (471)
+++++|++++++.+
T Consensus 503 ~a~~rl~~~~~~~~ 516 (517)
T PRK13355 503 DAMDRLADFFSYYR 516 (517)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999997653
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-58 Score=467.24 Aligned_cols=378 Identities=28% Similarity=0.463 Sum_probs=331.6
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLK 146 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~ 146 (471)
+++++....++.+..+...+......++++|+|+.|+|++++++.+.+++.+++... ..+|+|..|.++||+++++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~ 84 (389)
T PRK08068 5 PSELLKQLPKQFFASLVAKVNKKVAEGHDVINLGQGNPDQPTPEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYK 84 (389)
T ss_pred hhhHhhhcCccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 556666677777777766666666677889999999999988888899988887653 4679889999999999999999
Q ss_pred HHhCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhh
Q 012095 147 EENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL 225 (471)
Q Consensus 147 ~~~g~~~~~~-~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l 225 (471)
+.+|.+++++ +|++|+|+++++..++.+++++||+|++++|+|..|...++..|++++.+|++.+++|.+|++++++.+
T Consensus 85 ~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~ 164 (389)
T PRK08068 85 REYGVTLDPETEVAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEV 164 (389)
T ss_pred HHhCCCCCCCccEEEcCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhc
Confidence 8899888988 899999999999999999999999999999999999999999999999999987678899999999999
Q ss_pred ccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccC
Q 012095 226 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305 (471)
Q Consensus 226 ~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 305 (471)
.+++++|++++||||||.++|.+++++|+++|++| +++||+||+|.++.|++....++.......+++++++||||.||
T Consensus 165 ~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~-~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g 243 (389)
T PRK08068 165 AEKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKH-NIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFN 243 (389)
T ss_pred cccceEEEEECCCCCCCCcCCHHHHHHHHHHHHHc-CeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccC
Confidence 88899999999999999999999999999999999 99999999999988865333344443334568999999999999
Q ss_pred ccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC
Q 012095 306 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385 (471)
Q Consensus 306 ~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~ 385 (471)
++|+|+||+++++++++.+.+....+..+.+++.|.++..++.. ...+++++++.|+++++.+.+.|+++ |+.+.+
T Consensus 244 ~~GlRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~r~~~~~~L~~~-g~~~~~ 319 (389)
T PRK08068 244 MAGWRVAFAVGNESVIEAINLLQDHLFVSLFGAIQDAAIEALLS---DQSCVAELVARYESRRNAFISACREI-GWEVDA 319 (389)
T ss_pred CccceeEeEecCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccC
Confidence 99999999999999999999888777767777788888888865 46889999999999999999999988 888888
Q ss_pred CCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHH
Q 012095 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKG 461 (471)
Q Consensus 386 p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~ 461 (471)
|+||||+|+++++.. ++.+++++|++++||.+.||..|+. ++++||+++.+++.+++++++|.++
T Consensus 320 ~~g~~~~~v~~~~~~-----------~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~ 386 (389)
T PRK08068 320 PKGSFFAWMPVPKGY-----------TSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLTDEERLREAVERIGKL 386 (389)
T ss_pred CCeeEEEEEECCCCC-----------CHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEcCCHHHHHHHHHHHHHh
Confidence 999999999998532 6789999998777999999999985 4799999998888999999998763
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-58 Score=467.08 Aligned_cols=395 Identities=43% Similarity=0.706 Sum_probs=343.3
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~ 147 (471)
+++++..+.++.+..+.+.+++....|+++|+|+.|.|++++++.+.+++.+++.....+|++..|.++||+++++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~ 85 (402)
T PRK06107 6 PAARVSRIKPSPSTAAAARARELRAAGRSIVDLTVGEPDFDTPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLER 85 (402)
T ss_pred hhHHhhhcCccHHHHHHHHHHHHHhccCCEEEcCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 55667666666666666666666667888999999999999889999999998876667899999999999999999999
Q ss_pred HhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc
Q 012095 148 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 227 (471)
Q Consensus 148 ~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~ 227 (471)
.+|..+++++|++|+|+++++..++.+++++||+|++++|+|..|...+...|++++.++++.+++|.+|++.+++++++
T Consensus 86 ~~g~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~ 165 (402)
T PRK06107 86 RNGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAITP 165 (402)
T ss_pred hcCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcCc
Confidence 89998899999999999999999999999999999999999999999999999999999987667788999999999988
Q ss_pred CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCC-CCCCceEEEecCCcccCc
Q 012095 228 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP-GMWERTLTVNGFSKAFAM 306 (471)
Q Consensus 228 ~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~g~ 306 (471)
+++++++++|+||||.+++.+++++|+++|++|++++||+||+|.++.|++...+++..+. +..+++++++||||.|++
T Consensus 166 ~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~ 245 (402)
T PRK06107 166 RTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAM 245 (402)
T ss_pred CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcC
Confidence 8999999999999999999999999999999964799999999999988765455555543 235789999999999999
Q ss_pred cchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC
Q 012095 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (471)
Q Consensus 307 ~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p 386 (471)
+|+|+||+++++++++.+.........+++.+.|.++..+|.. .+.|+++.++.|+++++.+.+.|++++|+.+.+|
T Consensus 246 pGlRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~p 322 (402)
T PRK06107 246 TGWRIGYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALNG---DQSFVTESVAVYKQRRDYALALLNAIPGLSCLVP 322 (402)
T ss_pred cccceeeeecCHHHHHHHHHHHHhcccCCChHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCC
Confidence 9999999999999999999988877888999999999999975 3678999999999999999999998878998899
Q ss_pred CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhh
Q 012095 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 387 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~~~ 465 (471)
+||||+|++++...+..........++.+++++|++++||.+.||+.|+.++|+|++++.++|++++++++|+++++++
T Consensus 323 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~~~~e~l~~~l~~l~~~l~~~ 401 (402)
T PRK06107 323 DGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIATSLETLEEACARIERAVAAL 401 (402)
T ss_pred CcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999998532110000000112567889888888899999999999889999999999999999999999998765
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-59 Score=482.50 Aligned_cols=398 Identities=22% Similarity=0.353 Sum_probs=328.7
Q ss_pred cccccccccCCChHHHHHHHHHHHHh---------cCCCeEEcCCCCCC----------------CCCh-----------
Q 012095 67 SLSPRVNAVKPSKTVAITDQATALAQ---------AGVSVIRLAAGEPD----------------FDTP----------- 110 (471)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~~~~~~~~~---------~g~~~i~l~~g~~~----------------~~~p----------- 110 (471)
.+++++.+++++...++..++.++++ +|.++|+|++|+|+ +.+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~vi~~~~G~p~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~~ 88 (481)
T PTZ00377 9 DINPRVVAAEYAVRGLVPARAAEIKEELKTGKGKYPFDSIVYCNIGNPQALGQKPLTFYRQVLSLVEYPFLLEDPSVSSL 88 (481)
T ss_pred ccCHHHhhhhhhcCChHHHHHHHHHHHHhcCCccCCcceeEEcCCCChhhcCCCCchHHHHHHHHccChhhhcCcccccc
Confidence 36888888888888888778877766 45799999999996 7664
Q ss_pred --HHHHHHHHHHHHc---CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhc-CCCCeEEE
Q 012095 111 --VLIAEAGINAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-SPGDEVII 184 (471)
Q Consensus 111 --~~v~~a~~~~~~~---~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~-~~gd~Vlv 184 (471)
..+++++.+++.. ....|++..|.++||++|++++++.+|+++++++|++|+|+++++..++++++ +|||+|++
T Consensus 89 ~P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv 168 (481)
T PTZ00377 89 FPADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMI 168 (481)
T ss_pred CCHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEE
Confidence 4777777766654 34679999999999999999999999999999999999999999999999998 79999999
Q ss_pred cCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc------CCcEEEEcCCCCCcccCCCHHHHHHHHHHHH
Q 012095 185 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVA 258 (471)
Q Consensus 185 ~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~------~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~ 258 (471)
++|+|+.|...++..|++++.++++++++|.+|+++|++++++ ++|+|+++|||||||.++|.+++++|+++|+
T Consensus 169 ~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~ 248 (481)
T PTZ00377 169 PIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCY 248 (481)
T ss_pred CCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHH
Confidence 9999999999999999999999998878899999999999864 7899999999999999999999999999999
Q ss_pred hCCCeEEEEccCCCccccCC-CCcccccc----CCCC---CCceEEEecCCcc-cCccchhheeeEc---CHHHHHHHHH
Q 012095 259 KHPRLLVLSDEIYEHIIYAP-ATHTSFAS----LPGM---WERTLTVNGFSKA-FAMTGWRLGYIAG---PKHFVAACNK 326 (471)
Q Consensus 259 ~~~~~~ii~De~y~~~~~~~-~~~~~~~~----~~~~---~~~~i~~~S~SK~-~g~~G~R~G~v~~---~~~~i~~l~~ 326 (471)
+| +++||+||+|.++.|++ ....++.. +... ..++|+++||||. ++|+|||+||+++ ++++++++.+
T Consensus 249 ~~-~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~ 327 (481)
T PTZ00377 249 EK-GIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYK 327 (481)
T ss_pred HC-CCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHHHH
Confidence 99 99999999999999853 23334332 2221 1379999999997 5999999999986 8999999988
Q ss_pred HHhcccCCCChHHHHHHHHHHhccCC----ChHH---HHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCc
Q 012095 327 IQSQFTSGASSISQKAGVAALGLGYA----GGEV---VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTY 399 (471)
Q Consensus 327 ~~~~~~~~~~~~~q~aa~~~L~~~~~----~~~~---~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~ 399 (471)
... ...+++.++|.++..+|+.... .+.+ +.+++..|+++++.+.+.|++++|+.+..|+||||+|++++..
T Consensus 328 ~~~-~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p~gg~fl~~~~~l~ 406 (481)
T PTZ00377 328 LAS-INLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAMYAFPRIELP 406 (481)
T ss_pred Hhh-eecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeecCCeeEEEEeeccCc
Confidence 765 3457999999999999964211 1224 4444556899999999999999899999999999999876421
Q ss_pred cCC--cccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeecCHHHHHHHHHHHHHHHHhhCC
Q 012095 400 YGS--EAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAASLTTLQAAVERIKKGLLTLRP 467 (471)
Q Consensus 400 ~~~--~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~---~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~ 467 (471)
.+. ...+. ...++..++..+++++||.++||+.|+. ++|||+|++.+++++++++++|+++++++..
T Consensus 407 ~~~~~~~~~~-~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~~~~e~l~~~l~rl~~~~~~~~~ 478 (481)
T PTZ00377 407 EKAIQEAKER-GLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITILPPEEQIEEMVKKIKEFHESFMK 478 (481)
T ss_pred hhhHHHHHhc-CCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence 000 00000 0123556777888888999999999984 3699999998888999999999999987653
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-58 Score=465.00 Aligned_cols=377 Identities=32% Similarity=0.566 Sum_probs=334.6
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLK 146 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~ 146 (471)
+++++....++....+...+.++...|+++|+|+.|+|++++++.+.+++.+++.. ....|++..|.++||++++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~ 83 (385)
T PRK09276 4 LADRIKNLPPYLFAEIDKKKAEKIARGVDVISLGIGDPDLPTPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYK 83 (385)
T ss_pred hhhHhhhCCccHHHHHHHHHHHHHhcCCCEEEecCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHH
Confidence 45666677777676766667777778889999999999999899999999988764 34679888999999999999999
Q ss_pred HHhCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhh
Q 012095 147 EENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL 225 (471)
Q Consensus 147 ~~~g~~~~~~-~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l 225 (471)
+.+|.+++++ +|++|+|+++++..++..+++|||+|++++|+|+.|...++..|++++.++++.+++|.+|++++++.+
T Consensus 84 ~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~ 163 (385)
T PRK09276 84 RRFGVELDPETEVISLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDV 163 (385)
T ss_pred HHhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhc
Confidence 8889888887 599999999999999999999999999999999999999999999999999976667889999999988
Q ss_pred ccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccC
Q 012095 226 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305 (471)
Q Consensus 226 ~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 305 (471)
.+++++|+++|||||||.+++.+++++|+++|++| +++||+||+|.++.+++....++..++...+++|+++||||.||
T Consensus 164 ~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 242 (385)
T PRK09276 164 AKKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKY-DIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYN 242 (385)
T ss_pred cccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHC-CcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcC
Confidence 88899999999999999999999999999999999 99999999999998876555666666544578899999999999
Q ss_pred ccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC
Q 012095 306 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385 (471)
Q Consensus 306 ~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~ 385 (471)
++|+|+||+++++++++.+.+.......+++.+.|.++..+|.. .+.|++++++.++++++.+.+.|+++ |+.+..
T Consensus 243 ~~GlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~ 318 (385)
T PRK09276 243 MTGWRIGFAVGNADLIAGLGKVKSNVDSGVFQAIQEAGIAALNG---PQEVVEELRKIYQERRDILVEGLRKL-GLEVEP 318 (385)
T ss_pred CcchhheeeeCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHcC---cHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccC
Confidence 99999999999999999999887766777888899999999975 47889999999999999999999998 888888
Q ss_pred CCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHH
Q 012095 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKK 460 (471)
Q Consensus 386 p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~ 460 (471)
|++|||+|+++++.. ++.+++++|++++||.+.||..|+. ++++||+++.+++++.+++++|.+
T Consensus 319 ~~~~~~~~v~~~~~~-----------~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~ 384 (385)
T PRK09276 319 PKATFYVWAPVPKGY-----------TSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALTVPDERIEEAVERIKK 384 (385)
T ss_pred CCcceEEEEECCCCC-----------CHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeCCCHHHHHHHHHHHhh
Confidence 999999999998542 6788999998777999999998875 479999999888999999999864
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-58 Score=462.27 Aligned_cols=376 Identities=30% Similarity=0.528 Sum_probs=331.2
Q ss_pred cccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHH
Q 012095 69 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKE 147 (471)
Q Consensus 69 s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~ 147 (471)
++++.....+.+..+.+.+.+.+..|+++++|+.|+|++++|+.+.+++.+++.. ...+|++..|.++||+++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~ 82 (383)
T TIGR03540 3 ADRIENLPPYLFAEIDKKKAEKKAEGVDVISLGIGDPDLPTPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKR 82 (383)
T ss_pred chhhccCChhHHHHHHHHHHHHHhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3444445555555566666666677889999999999999899999999987754 357898889999999999999998
Q ss_pred HhCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc
Q 012095 148 ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 226 (471)
Q Consensus 148 ~~g~~~~~~-~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~ 226 (471)
.+|.+++++ +|++|+|+++++..++++++++||.|++++|+|+.|...++..|++++.+|++.++++.+|++++++.+.
T Consensus 83 ~~~~~~~~~~~vi~t~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~ 162 (383)
T TIGR03540 83 RFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIA 162 (383)
T ss_pred hhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhcc
Confidence 889887776 6999999999999999999999999999999999999999999999999999877788899999999988
Q ss_pred cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCc
Q 012095 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (471)
Q Consensus 227 ~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~ 306 (471)
++++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++....++..++...+++|+++||||.||+
T Consensus 163 ~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~ 241 (383)
T TIGR03540 163 KKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEY-NIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNM 241 (383)
T ss_pred ccceEEEEeCCCCCcCccCCHHHHHHHHHHHHHc-CEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCC
Confidence 8999999999999999999999999999999999 999999999999988765556666655445788999999999999
Q ss_pred cchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC
Q 012095 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (471)
Q Consensus 307 ~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p 386 (471)
+|+|+||+++++++++++.........+++.+.|.++..+|.+ ..+|++++++.++++++.+.+.|++. |+.+..|
T Consensus 242 ~GlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~ 317 (383)
T TIGR03540 242 TGWRIGMAVGNADLIAGLGKVKTNVDSGVFQAIQYAAIAALNG---PQDVVKEIRKIYQRRRDLLLEALKKI-GIDVEKP 317 (383)
T ss_pred ccceeeEEeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHhC-CCEecCC
Confidence 9999999999999999998887766677888999999999986 47899999999999999999999998 8999899
Q ss_pred CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHH
Q 012095 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKK 460 (471)
Q Consensus 387 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~ 460 (471)
++|||+|+++++.. ++.+++++|++++||.+.||..|+. ++++||+++.+++++++++++|++
T Consensus 318 ~~~~~~~~~l~~~~-----------~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 318 KATFYVWVPVPEGY-----------TSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTVPDERLEEAVARIKK 382 (383)
T ss_pred CcceEEEEECCCCC-----------CHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEecCCHHHHHHHHHHHhh
Confidence 99999999998542 6789999988777999999999975 479999999888999999998864
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-58 Score=462.38 Aligned_cols=375 Identities=32% Similarity=0.578 Sum_probs=327.5
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~ 147 (471)
+++++.......+..+.+.. +..+++|+|+.|+|++++++.+.+++.+.......+|++..|.++||+++++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~----~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~ 81 (384)
T PRK06348 6 LAKKYQQMEVNIMAEIATLA----KKFPDIIDLSLGDPDLITDESIINAAFEDAKKGHTRYTDSGGDVELIEEIIKYYSK 81 (384)
T ss_pred HHHHHhcCCccHHHHHHHHH----HhcCCcEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHH
Confidence 45556555555554444332 22356899999999998888887777666655678899999999999999999999
Q ss_pred HhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc
Q 012095 148 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 227 (471)
Q Consensus 148 ~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~ 227 (471)
.+|+.+++++|++|+|+++++..++.+++++||+|++++|+|..|...++..|++++.+++..+++|.+|++.+++.+++
T Consensus 82 ~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~ 161 (384)
T PRK06348 82 NYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITS 161 (384)
T ss_pred HhCCCCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCc
Confidence 99999999999999999999999999999999999999999999999999999999999986667789999999999988
Q ss_pred CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCcc
Q 012095 228 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307 (471)
Q Consensus 228 ~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 307 (471)
++++|++++||||||.++|.+++++|+++|++| +++||+||+|.++.|++ ...++..++...+++|+++||||.+|++
T Consensus 162 ~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~-~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~vi~~~SfSK~~~l~ 239 (384)
T PRK06348 162 KTKAIILNSPNNPTGAVFSKETLEEIAKIAIEY-DLFIISDEVYDGFSFYE-DFVPMATLAGMPERTITFGSFSKDFAMT 239 (384)
T ss_pred CccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHC-CeEEEEecccccceeCC-CccchhhcCCCcCcEEEEecchhccCCc
Confidence 899999999999999999999999999999999 99999999999998865 2345555554457999999999999999
Q ss_pred chhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC
Q 012095 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (471)
Q Consensus 308 G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~ 387 (471)
|+|+||+++++++++.+.........+++.+.|.++..+|.. .+.+++++++.|+++++++.+.|.+++|+++.+|+
T Consensus 240 GlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~ 316 (384)
T PRK06348 240 GWRIGYVIAPDYIIETAKIINEGICFSAPTISQRAAIYALKH---RDTIVPLIKEEFQKRLEYAYKRIESIPNLSLHPPK 316 (384)
T ss_pred cccceeeecCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHhcCCCceeccCC
Confidence 999999999999999999888777778999999999999975 47889999999999999999999988788888999
Q ss_pred cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHH
Q 012095 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKG 461 (471)
Q Consensus 388 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~ 461 (471)
||||+|++++... .++.++++.|++++||.+.||+.|+. ++++|++++.+++++++++++|++.
T Consensus 317 gg~~~~~~~~~~~----------~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~ 382 (384)
T PRK06348 317 GSIYAFINIKKTG----------LSSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACTVGIEVLEEAFNRIEKM 382 (384)
T ss_pred eeEEEEEecccCC----------CCHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEecCCHHHHHHHHHHHHhh
Confidence 9999999997420 16789999998878999999999985 4799999988889999999999764
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-58 Score=462.43 Aligned_cols=379 Identities=27% Similarity=0.499 Sum_probs=330.8
Q ss_pred cccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHH
Q 012095 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKL 145 (471)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~ 145 (471)
.+++++..+.++....+.+.+...+..|+++|+|+.|+|++++|+.+.+++.+.+... ...|++..|.++||+++++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~ 86 (394)
T PRK05942 7 TPADRLQALPPYVFARLDELKARAREQGLDLIDLGMGNPDGAAPQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWY 86 (394)
T ss_pred chhhhhccCCCcHHHHHHHHHHHHHhcCCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHH
Confidence 4556666666665555555566666678899999999999877777888777766543 478998999999999999999
Q ss_pred HHHhCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhh
Q 012095 146 KEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESK 224 (471)
Q Consensus 146 ~~~~g~~~~~~-~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~ 224 (471)
++.+|++++++ +|++|+|+++++..++.++++|||+|++++|+|+.+...+...|++++.++++.+++|.+|++++++.
T Consensus 87 ~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 166 (394)
T PRK05942 87 HRRYGVELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEE 166 (394)
T ss_pred HHHHCCCcCCCCeEEEccChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHHh
Confidence 99889888888 58999999999999999999999999999999999999999999999999998777889999999999
Q ss_pred hccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCccc
Q 012095 225 LTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 304 (471)
Q Consensus 225 l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 304 (471)
+++++|+|+++|||||||.++|.+++++|+++|++| +++||+||+|.++.+++....++..++...+++|+++||||.|
T Consensus 167 ~~~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~-~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~ 245 (394)
T PRK05942 167 VAQQAKILYFNYPSNPTTATAPREFFEEIVAFARKY-EIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTY 245 (394)
T ss_pred ccccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHc-CeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhcc
Confidence 988999999999999999999999999999999999 9999999999999887654455555554346789999999999
Q ss_pred CccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeee
Q 012095 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (471)
Q Consensus 305 g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~ 384 (471)
|++|+|+||+++++++++.+.........++++++|.++..+|+. .+.++++.++.|+++++++.+.|++. |+.+.
T Consensus 246 ~~~GlRiG~i~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~ 321 (394)
T PRK05942 246 NMAGWRVGFVVGNRHIIQGLRTLKTNLDYGIFSALQKAAETALQL---PDSYLQQVQERYRTRRDFLIQGLGEL-GWNIP 321 (394)
T ss_pred CChhhheeeeecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHC-CCeec
Confidence 999999999999999999999887766777899999999999975 47889999999999999999999887 88888
Q ss_pred CCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHH
Q 012095 385 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKG 461 (471)
Q Consensus 385 ~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~ 461 (471)
.|++|||+|++++... ++.+++.++++++||.+.||+.|+. ++|+|++++.+.+.+.+++++|.++
T Consensus 322 ~~~~~~f~~~~~~~~~-----------~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~ 389 (394)
T PRK05942 322 PTKATMYLWVPCPVGM-----------GSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIADCDRLGEALDRLKQA 389 (394)
T ss_pred CCCeeeEEEEECCCCC-----------CHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHHHHHh
Confidence 8999999999998542 5678888888778999999999964 5799999998888999999999775
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-58 Score=465.31 Aligned_cols=373 Identities=25% Similarity=0.416 Sum_probs=325.2
Q ss_pred ccccccCCChHHHHHHHHHHH-HhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHH
Q 012095 70 PRVNAVKPSKTVAITDQATAL-AQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEE 148 (471)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~ 148 (471)
+++..++++.+..+.+.+..+ ...|+++|+|+.|+|++++|+.+.+++.+.+. +..+|++..|.++||++|++++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~ 81 (396)
T PRK09147 3 PRLDRLQPYPFEKLRALFAGVTPPADLPPISLSIGEPKHPTPAFIKDALAANLD-GLASYPTTAGLPALREAIAAWLERR 81 (396)
T ss_pred chhhcCCcchHHHHHHHHHhhhhccCCCeEecCCCCCCCCCCHHHHHHHHHHhh-hhcCCCCCCCCHHHHHHHHHHHHHH
Confidence 455667777777777777665 34688999999999999999999999988765 4678998999999999999999999
Q ss_pred hCCC-CCCC-cEEEeCChHHHHHHHHHHhcCC---CCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHh
Q 012095 149 NGLS-YTPD-QILVSNGAKQSILQAVLAVCSP---GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLES 223 (471)
Q Consensus 149 ~g~~-~~~~-~i~it~G~~~al~~~~~~l~~~---gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~ 223 (471)
+|++ ++++ +|++|+|+++++..+++++++| ||.|++++|+|+.|...++..|++++.+|++.+++|.+|++.+++
T Consensus 82 ~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~ 161 (396)
T PRK09147 82 YGLPALDPATQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPA 161 (396)
T ss_pred hCCCcCCccceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEEEEeccCccccCccCHHHHHH
Confidence 9988 8885 9999999999999999999999 899999999999999999999999999999877789999999998
Q ss_pred hhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCC-Ccccccc----CC-CCCCceEEE
Q 012095 224 KLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA-THTSFAS----LP-GMWERTLTV 297 (471)
Q Consensus 224 ~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~----~~-~~~~~~i~~ 297 (471)
.+.+++|++++||||||||.++|.+++++|+++|++| +++||+||+|.++.|++. ...+... +. ...+++|++
T Consensus 162 ~~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 240 (396)
T PRK09147 162 EVWARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRY-GFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVF 240 (396)
T ss_pred HHhhccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHc-CeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEE
Confidence 8877899999999999999999999999999999999 999999999999988653 1112111 11 124799999
Q ss_pred ecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC
Q 012095 298 NGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377 (471)
Q Consensus 298 ~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 377 (471)
+||||.++++|+|+||+++++++++.+.+.......+++.+.|.++.+++.. .+++.+.++.|+++++.+.+.|.+
T Consensus 241 ~S~SK~~~~~GlRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~L~~ 316 (396)
T PRK09147 241 HSLSKRSNVPGLRSGFVAGDAALLKKFLLYRTYHGCAMPPAVQAASIAAWND----EAHVRENRALYREKFDAVTPILAP 316 (396)
T ss_pred eccccccCCccceeeeecCCHHHHHHHHHHhhhcccCCCHHHHHHHHHHhcc----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998877666667899999998888853 678999999999999999999987
Q ss_pred CCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--------CCcEEEEeecCHH
Q 012095 378 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--------DTCIRISYAASLT 449 (471)
Q Consensus 378 ~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--------~~~iRis~~~~~e 449 (471)
. +.+..|++|+|+|++++ . ++.++++.|++++||.+.||..|+. .+++||+++.+++
T Consensus 317 ~--~~~~~p~~g~f~~~~~~-~------------~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~~~~ 381 (396)
T PRK09147 317 V--LDVQLPDAGFYLWAKVP-G------------DDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVAPLA 381 (396)
T ss_pred h--cCCCCCCeeEEEEEECC-C------------CHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecCCHH
Confidence 4 56678999999999997 2 5678999988777999999998862 4699999999889
Q ss_pred HHHHHHHHHHHHHH
Q 012095 450 TLQAAVERIKKGLL 463 (471)
Q Consensus 450 ~i~~~~~~l~~~l~ 463 (471)
++++++++|.++++
T Consensus 382 ~l~~~l~rl~~~~~ 395 (396)
T PRK09147 382 ECVEAAERIVDFCR 395 (396)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998874
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-58 Score=462.44 Aligned_cols=380 Identities=32% Similarity=0.547 Sum_probs=338.4
Q ss_pred ccccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHH
Q 012095 66 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKL 145 (471)
Q Consensus 66 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~ 145 (471)
..++++++++.++.+.++...+.+....++++|+|+.|+|++++|+.+.+++.+.+..+..+|++..|.++||+++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~ 82 (387)
T PRK08960 3 QGYSRRSRDIEPFHVMALLARANELEAAGHDVIHLEIGEPDFTTAEPIVAAGQAALAAGHTRYTAARGLPALREAIAGFY 82 (387)
T ss_pred cchhhHHHhCCchHHHHHHHHHHHHHhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHH
Confidence 34567788888888888888877777788899999999999999999999999988766678999999999999999999
Q ss_pred HHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhh
Q 012095 146 KEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL 225 (471)
Q Consensus 146 ~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l 225 (471)
++.+|+.+++++|++|+|++++|..++.++++|||+|++++|+|+.+...++..|++++.++++.+++|.+|++.+++.+
T Consensus 83 ~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~ 162 (387)
T PRK08960 83 AQRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHW 162 (387)
T ss_pred HHHhCCCCChhhEEEccCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHh
Confidence 99999989999999999999999999999999999999999999999999999999999999987777899999999999
Q ss_pred ccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccC
Q 012095 226 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305 (471)
Q Consensus 226 ~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 305 (471)
+++++++++++||||||.++|.+++++|+++|++| +++||+||+|.++.|++. ..++..+ .+++++++||||.||
T Consensus 163 ~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~-~~~li~De~Y~~~~~~~~-~~~~~~~---~~~vi~~~S~SK~~g 237 (387)
T PRK08960 163 NADTVGALVASPANPTGTLLSRDELAALSQALRAR-GGHLVVDEIYHGLTYGVD-AASVLEV---DDDAFVLNSFSKYFG 237 (387)
T ss_pred CccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHc-CCEEEEEccccccccCCC-CCChhhc---cCCEEEEeecccccC
Confidence 88899999999999999999999999999999999 999999999999888643 2333333 468999999999999
Q ss_pred ccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCee-e
Q 012095 306 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-S 384 (471)
Q Consensus 306 ~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~-~ 384 (471)
++|+|+||+++++++++.+.+.......+++.+.|.++..+|... ...++.+.++.|+++++.+.+.|+++ |+.+ .
T Consensus 238 ~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~ 314 (387)
T PRK08960 238 MTGWRLGWLVAPPAAVPELEKLAQNLYISASTPAQHAALACFEPE--TLAILEARRAEFARRRDFLLPALREL-GFGIAV 314 (387)
T ss_pred CcccEEEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHHHHHHHHHHhc-CCcCCc
Confidence 999999999999999999998888778889999999999998742 36889999999999999999999987 7654 4
Q ss_pred CCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeecCHHHHHHHHHHHHHH
Q 012095 385 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAASLTTLQAAVERIKKG 461 (471)
Q Consensus 385 ~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~---~~~iRis~~~~~e~i~~~~~~l~~~ 461 (471)
.|+||+|+|+++++.. .++.++++.|++++||.+.||+.|+. ++|+|++++.+.+++++++++|.++
T Consensus 315 ~p~g~~f~~~~~~~~~----------~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~~~~~l~~al~~l~~~ 384 (387)
T PRK08960 315 EPQGAFYLYADISAFG----------GDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQSLPRLQEAVERIARG 384 (387)
T ss_pred CCCeeEEEEEeccccC----------CCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 6899999999998521 16788999888878999999999975 3699999999889999999999987
Q ss_pred HH
Q 012095 462 LL 463 (471)
Q Consensus 462 l~ 463 (471)
++
T Consensus 385 ~~ 386 (387)
T PRK08960 385 LR 386 (387)
T ss_pred Hh
Confidence 64
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-58 Score=463.79 Aligned_cols=384 Identities=26% Similarity=0.450 Sum_probs=331.4
Q ss_pred ccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHHH
Q 012095 70 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEE 148 (471)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~ 148 (471)
+++..+.++.+..+...+.+.++.+.++++|+.|+|+.++|+.+.+++.+.+.. ...+|++..|.++||+++++++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~ 87 (403)
T PRK08636 8 NKIKRLPKYVFAEVNELKMAARRAGEDIIDFSMGNPDGPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRK 87 (403)
T ss_pred HHHHhCCccHHHHHHHHHHHHHhcCCCEEEcCCcCCCCCCCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHH
Confidence 445566666677777777777777888999999999988787788887776654 3678999999999999999999999
Q ss_pred hCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHH----Hh
Q 012095 149 NGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVL----ES 223 (471)
Q Consensus 149 ~g~~~~~~-~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l----~~ 223 (471)
+|++++++ +|++|+|+++++..+++++++|||.|++++|+|+.|...++..|++++.++++.+++|++|++.+ ++
T Consensus 88 ~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 167 (403)
T PRK08636 88 YNVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEK 167 (403)
T ss_pred hCCCCCCCCeEEECCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHH
Confidence 99988987 79999999999999999999999999999999999999999999999999987566788998754 55
Q ss_pred hhc---cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecC
Q 012095 224 KLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF 300 (471)
Q Consensus 224 ~l~---~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 300 (471)
+++ .+++++++++||||||.++|.+++++|+++|++| +++||+||+|.++.|++...+++..++...+++|+++||
T Consensus 168 ~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~-~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~ 246 (403)
T PRK08636 168 ALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKE-RFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTL 246 (403)
T ss_pred HHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHc-CcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEec
Confidence 553 4688999999999999999999999999999999 999999999999998765556666665444678899999
Q ss_pred CcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 012095 301 SKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 380 (471)
Q Consensus 301 SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g 380 (471)
||.||++|+|+||+++++++++.+.+.......+++++.|.++..++.. ...|++++++.|+++++.+.+.|++. |
T Consensus 247 SK~~~~~GlRiG~iv~~~~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-~ 322 (403)
T PRK08636 247 SKSYNMAGWRVGFVVGNKKLVGALKKIKSWLDYGMFTPIQVAATIALDG---DQSCVEEIRETYRKRRDVLIESFANA-G 322 (403)
T ss_pred ccccCCccceeeeeeCCHHHHHHHHHHHHHhcccCChHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHC-C
Confidence 9999999999999999999999998887665667888899988887764 36889999999999999999999987 7
Q ss_pred CeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHH
Q 012095 381 VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERI 458 (471)
Q Consensus 381 ~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l 458 (471)
+.+..|++|+|+|+++++... ..++.++++.+++++||.+.||..|+. ++|+||+++.+++++++++++|
T Consensus 323 ~~~~~p~~g~~~~~~l~~~~~--------~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~~~rl 394 (403)
T PRK08636 323 WELQKPRASMFVWAKIPEPAR--------HLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALIENENRIRQAARNI 394 (403)
T ss_pred CcccCCCcceEEEEECCCccC--------CCCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEecCCHHHHHHHHHHH
Confidence 888889999999999985321 014678998888778999999999975 4799999998889999999999
Q ss_pred HHHHHhhC
Q 012095 459 KKGLLTLR 466 (471)
Q Consensus 459 ~~~l~~~~ 466 (471)
+++++.++
T Consensus 395 ~~~l~~~~ 402 (403)
T PRK08636 395 KKFLKELE 402 (403)
T ss_pred HHHHHhhc
Confidence 99998754
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-57 Score=464.17 Aligned_cols=364 Identities=23% Similarity=0.418 Sum_probs=317.2
Q ss_pred CCCeEEcCCCCCC----CCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 94 GVSVIRLAAGEPD----FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 94 g~~~i~l~~g~~~----~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
|+++|+|+.|+|+ +++|+.+.+++.+++..+ ...|++..|.++||+++++++++.+|.++++++|++|+|++++|
T Consensus 51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al 130 (430)
T PLN00145 51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAI 130 (430)
T ss_pred CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHH
Confidence 7899999999985 777899999999988764 45798889999999999999999899889999999999999999
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHH
Q 012095 169 LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKN 248 (471)
Q Consensus 169 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~ 248 (471)
.++++++++|||+|++++|+|+.|...+...|++++.+++.++++|.+|++.+++.+++++++++++|||||||.+++.+
T Consensus 131 ~l~~~~l~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~P~NPtG~v~~~~ 210 (430)
T PLN00145 131 EIIMSVLAQPGANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALADENTVAMVIINPNNPCGSVYSYE 210 (430)
T ss_pred HHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCcCceEEEEeCCCCCCCCCCCHH
Confidence 99999999999999999999999999999999999999987777899999999999998999999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEc--CHHHHH----
Q 012095 249 LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG--PKHFVA---- 322 (471)
Q Consensus 249 ~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~--~~~~i~---- 322 (471)
++++|+++|+++ +++||+||+|.++.|++....++..+.. .+++|+++||||.|++||||+||+++ ++.+++
T Consensus 211 ~l~~i~~~a~~~-~i~ii~De~Y~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~ 288 (430)
T PLN00145 211 HLAKIAETARKL-GILVIADEVYDHLTFGSKPFVPMGVFGE-VAPVLTLGSISKRWVVPGWRLGWIATCDPNGILKETKV 288 (430)
T ss_pred HHHHHHHHHHHc-CCEEEEeccchhhccCCCCccchhhhcc-cCcEEEEeccccccCCCCeeEEEEEEecchhhhhhhHH
Confidence 999999999999 9999999999999987654455555543 57899999999999999999999997 444443
Q ss_pred --HHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCee-eCCCcceEEeEecCCc
Q 012095 323 --ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-SEPQGAFYLFIDFSTY 399 (471)
Q Consensus 323 --~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~-~~p~~g~~~~~~~~~~ 399 (471)
.+.... ....+++++.|.++..+|... .++++++.++.++++++.+.+.|++++|+.+ ..|+|+||+|++++..
T Consensus 289 ~~~~~~~~-~~~~~~~~~~Q~a~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P~ga~y~~v~l~~~ 365 (430)
T PLN00145 289 VDSIRNYL-NISTDPATFVQGAIPQIIANT--KEEFFTKTLGLLKETADICYEKIKEIKCITCPHKPEGSMFVMVKLDLS 365 (430)
T ss_pred HHHHHHHh-cccCCCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCeeeEEEeccChh
Confidence 333333 334467899999999999852 2688999999999999999999999888876 4799999999998732
Q ss_pred cCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhCCC
Q 012095 400 YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRPG 468 (471)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~~ 468 (471)
.. ....++.+++.+|++++||.+.||..|+.++|+||+|+.+++++++++++|.+++.+.+..
T Consensus 366 ~~------~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~~~~~~l~~al~rl~~~~~~~~~~ 428 (430)
T PLN00145 366 CL------SGIKDDMDFCCKLAKEESVVVLPGSALGMKNWLRITFAIDPPSLEDGLERLKSFCLRHAKL 428 (430)
T ss_pred hc------CCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHhccc
Confidence 00 0012567899889988899999999999899999999999899999999999999887644
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-57 Score=462.15 Aligned_cols=358 Identities=23% Similarity=0.351 Sum_probs=318.3
Q ss_pred CCeEEcCCCCCC-CCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcEEEeCChHHHHHHH
Q 012095 95 VSVIRLAAGEPD-FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSILQA 171 (471)
Q Consensus 95 ~~~i~l~~g~~~-~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~-~~i~it~G~~~al~~~ 171 (471)
++.|+|+.|+|+ +++|+.+.+++.+++... ..+|++..|.++||++|++++++.+|.++++ ++|++|+|+++++..+
T Consensus 39 ~~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~ 118 (405)
T PRK06207 39 GRPVDFSHGDVDAHEPTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLA 118 (405)
T ss_pred CCceecCCcCCCCCCCCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHH
Confidence 468999999987 456778888888877653 4679889999999999999999999988888 8999999999999999
Q ss_pred HHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCC---CCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHH
Q 012095 172 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR---ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKN 248 (471)
Q Consensus 172 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~---~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~ 248 (471)
+.+++++||+|++++|+|+.|...++..|++++.++++ .+++|++|+++|++++++++++|++++||||||.+++.+
T Consensus 119 ~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~e 198 (405)
T PRK06207 119 VAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVFLFSNPNNPAGVVYSAE 198 (405)
T ss_pred HHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhhcCeEEEECCCCCCCCcCCCHH
Confidence 99999999999999999999999999999999999986 234688999999999988899999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHH
Q 012095 249 LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 328 (471)
Q Consensus 249 ~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~ 328 (471)
++++|+++|++| +++||+||+|.++.|++....++..+....+++|+++||||.|+++|+|+||+++++++++.+.+..
T Consensus 199 ~l~~l~~~a~~~-~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~~~~l~~~~~~~~ 277 (405)
T PRK06207 199 EIAQIAALARRY-GATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAFGSPAIIDRMEKLQ 277 (405)
T ss_pred HHHHHHHHHHHc-CCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceEEEEcCHHHHHHHHHHH
Confidence 999999999999 9999999999999987654445554444468999999999999999999999999999999999988
Q ss_pred hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCC
Q 012095 329 SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFG 408 (471)
Q Consensus 329 ~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~ 408 (471)
..+..+.+.+.|.++..+|++ ...|+++.++.++++|+.+.+.|++++|+.+..|++|+|+|++++...
T Consensus 278 ~~~~~~~~~~~q~a~~~~l~~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~fl~~~l~~~~-------- 346 (405)
T PRK06207 278 AIVSLRAAGYSQAVLRTWFSE---PDGWMKDRIARHQAIRDDLLRVLRGVEGVFVRAPQAGSYLFPRLPRLA-------- 346 (405)
T ss_pred hHhccCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEeCcccC--------
Confidence 877778889999999999975 356788888889999999999998887899888999999999997520
Q ss_pred CCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012095 409 KIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 409 ~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~l~~~~ 466 (471)
.+..++++.|++++||.+.||..|+. ++++||+++.+.+++++++++|++++++++
T Consensus 347 --~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~~~~~l~~al~rl~~~l~~~~ 404 (405)
T PRK06207 347 --VSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQDHAAAVAAAERIAQLIERYR 404 (405)
T ss_pred --CCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence 15788999988777999999999974 579999999988999999999999998764
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-58 Score=466.52 Aligned_cols=381 Identities=22% Similarity=0.350 Sum_probs=315.5
Q ss_pred HHHHHHHHHHHHhcCCCeEEcCCCCC---CCCChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 012095 80 TVAITDQATALAQAGVSVIRLAAGEP---DFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTP 155 (471)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~i~l~~g~~---~~~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~ 155 (471)
+..+...+.+++..|+++++|+.|+| ++++|+.+.+++.+++.+ ...+|++..|.++||+++++++++.+|+++++
T Consensus 17 ~~~~~~~~~~~~~~g~~~~~~~~G~p~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~ 96 (433)
T PRK06855 17 IRNIVAVAKKLEKLGVKITWENIGDPIAKGEKIPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITP 96 (433)
T ss_pred HHHHHHHHHHHHhccccccccccCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCH
Confidence 34455555666667889999999999 678899999999887754 45689999999999999999999989999999
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH-HHHcCCEEEEecCCCCCCCcCCHHHHHhhhc--cCCcEE
Q 012095 156 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM-ARIADATPVILPTRISENFLLDPKVLESKLT--EKSRLL 232 (471)
Q Consensus 156 ~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~-~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~--~~~~~i 232 (471)
++|++|+|++++|..++. +++|||.|++++|+|+.|... ....|++++.++++++++|.+|+++|+++++ ++++++
T Consensus 97 ~~I~it~G~~~al~~~~~-l~~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i 175 (433)
T PRK06855 97 DDIIFFNGLGDAIAKIYG-LLRREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGI 175 (433)
T ss_pred hHEEEcCcHHHHHHHHHH-hcCCCCeEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcCCCceEE
Confidence 999999999999998875 789999999999999998755 3456999999999877789999999999986 467899
Q ss_pred EEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhhe
Q 012095 233 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLG 312 (471)
Q Consensus 233 ~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G 312 (471)
++++||||||.++|.+++++|+++|++| +++||+||+|.++.|++...+++.++.. ..++|+++||||.|++||||+|
T Consensus 176 ~l~~P~NPTG~~~s~~~~~~l~~~a~~~-~~~II~De~Y~~l~~~~~~~~sl~~~~~-~~~~I~~~S~SK~~~~pGlRiG 253 (433)
T PRK06855 176 LLINPDNPTGAVYPKEILREIVDIAREY-DLFIICDEIYNNIVYNGKKTVPLSEVIG-DVPGIALKGISKELPWPGSRCG 253 (433)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccccccCCCCCCCHHHHcC-cCCeEEEecCccccCCCcceEE
Confidence 9999999999999999999999999999 9999999999999987654556666543 2468999999999999999999
Q ss_pred eeEcC-----H---HHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeee
Q 012095 313 YIAGP-----K---HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (471)
Q Consensus 313 ~v~~~-----~---~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~ 384 (471)
|++++ + ++++.+..... ...+++.+.|.++..+|.++.. ++|++++++.|+++++.+.+.|++++|+.+.
T Consensus 254 ~ii~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Q~a~~~~l~~~~~-~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~ 331 (433)
T PRK06855 254 WIEVYNADKDEVFKKYINSILNAKM-IEVCSTTLPQMAIPRIMSHPEY-KNYLKERNKRYEKRSNIAYEKLKDVPGLKVN 331 (433)
T ss_pred EEEEeCCchhhHHHHHHHHHHHhhc-cccCCChHHHHHHHHhhcCCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCCeecc
Confidence 99973 2 23344433332 3456889999999999986432 6899999999999999999999988888889
Q ss_pred CCCcceEEeEecCCccCCcccCCC----------------CCCCHHHHHHHHHHcCCEEEECCCCCCCC-CcEEEEeec-
Q 012095 385 EPQGAFYLFIDFSTYYGSEAEGFG----------------KIENSESLCRYLLDKAQVALVPGDAFGDD-TCIRISYAA- 446 (471)
Q Consensus 385 ~p~~g~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~-~~iRis~~~- 446 (471)
+|+||||+|+++|+.......+.. ...++.+++..|+++.||.+.||+.|+.. .++||+|+.
T Consensus 332 ~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~~~~Rls~~~~ 411 (433)
T PRK06855 332 RTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTELNGFRVTLLER 411 (433)
T ss_pred CCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCCCCceEEEECCC
Confidence 999999999999863210000000 00146788888888889999999999753 579999997
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q 012095 447 SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 447 ~~e~i~~~~~~l~~~l~~~ 465 (471)
++++|++++++|+++++++
T Consensus 412 ~~~~i~~~~~~l~~~~~~~ 430 (433)
T PRK06855 412 DEEKFEWIYQTLAEKIEEY 430 (433)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999764
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-57 Score=458.75 Aligned_cols=384 Identities=27% Similarity=0.439 Sum_probs=330.2
Q ss_pred cccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHH
Q 012095 69 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKE 147 (471)
Q Consensus 69 s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~ 147 (471)
++++..+.++.+.++.+.+......|+++|+|+.|+|++++|+.+.+++.+.+.. ...+|++..|.++||+++++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~ 83 (405)
T PRK09148 4 FHRIRRLPPYVFEQVNRLKAAARAAGADIIDLGMGNPDLPTPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYAR 83 (405)
T ss_pred hhhhhcCCccHHHHHHHHHHHHHhcCCCeEEcCCCCCCCCCCHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHH
Confidence 3455666677677776666666667889999999999998888888888887653 347899889999999999999998
Q ss_pred HhCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc
Q 012095 148 ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 226 (471)
Q Consensus 148 ~~g~~~~~~-~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~ 226 (471)
.+|++++++ +|++|+|++++|..++.+++++||+|++++|+|+.|...++..|++++.++++.+++|..+++++.+...
T Consensus 84 ~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~l~~~~~~~~ 163 (405)
T PRK09148 84 RFGVKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEEFFPALERAVRHSI 163 (405)
T ss_pred HhCCCCCCCCcEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHhcCCEEEEEeCCCCCCCccCHHHHHhhcc
Confidence 889888887 8999999999999999999999999999999999999999999999999999766666555555554445
Q ss_pred cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCc
Q 012095 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (471)
Q Consensus 227 ~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~ 306 (471)
++++++++++||||||.++|.+++++|+++|++| +++||+||+|.++.|++....++..++...+++|+++||||.+|+
T Consensus 164 ~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~-~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~ 242 (405)
T PRK09148 164 PKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKH-DIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSM 242 (405)
T ss_pred ccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHc-CeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCC
Confidence 6889999999999999999999999999999999 999999999999988764444555555435678999999999999
Q ss_pred cchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC
Q 012095 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (471)
Q Consensus 307 ~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p 386 (471)
+|+|+||+++++++++.+.+.+.....+++.+.|.++..+|.. .+.+++++++.|+++++.+.+.|+++ |+.+..|
T Consensus 243 pGlR~G~~v~~~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~---~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~p 318 (405)
T PRK09148 243 AGWRMGFAVGNERLIAALTRVKSYLDYGAFTPIQVAATAALNG---PQDCIAEMRELYKKRRDVLVESFGRA-GWDIPPP 318 (405)
T ss_pred cchheeeeeCCHHHHHHHHHHHHHhccCCChHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHc-CCccCCC
Confidence 9999999999999999999988777778899999999999975 36889999999999999999999987 7887789
Q ss_pred CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012095 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 387 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~l~~ 464 (471)
++|+|+|+++|.... ..++.++++.|+++.||.+.||..|+. ++|+||+++.+.+++.+++++|.+++.+
T Consensus 319 ~~g~f~~~~l~~~~~--------~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~~~~~~l~~al~~l~~~l~~ 390 (405)
T PRK09148 319 AASMFAWAPIPEAFR--------HLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALVENEQRIRQAARNIKRFLSS 390 (405)
T ss_pred CeeEEEEEECCCccC--------CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 999999999985421 014678999888777999999999975 4799999998889999999999999875
Q ss_pred h
Q 012095 465 L 465 (471)
Q Consensus 465 ~ 465 (471)
+
T Consensus 391 ~ 391 (405)
T PRK09148 391 A 391 (405)
T ss_pred H
Confidence 4
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-57 Score=464.26 Aligned_cols=366 Identities=23% Similarity=0.406 Sum_probs=315.3
Q ss_pred cCCCeEEcCCCCCC----CCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHH
Q 012095 93 AGVSVIRLAAGEPD----FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (471)
Q Consensus 93 ~g~~~i~l~~g~~~----~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~a 167 (471)
.++++|+|+.|+|+ +.+|+.+.+++.+++..+ ...|++..|.++||+++++++++.+|..+++++|++|+|++++
T Consensus 64 ~~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~a 143 (462)
T PLN02187 64 VNKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQG 143 (462)
T ss_pred CCCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHH
Confidence 46789999999988 556788999999888754 3679999999999999999999888988999999999999999
Q ss_pred HHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCH
Q 012095 168 ILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247 (471)
Q Consensus 168 l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~ 247 (471)
|..++.++++|||+|++++|+|+.|...++..|++++.+++.++++|.+|++.+++++++++++++++|||||||.+++.
T Consensus 144 l~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~~v~i~nP~NPTG~v~s~ 223 (462)
T PLN02187 144 IEIVFESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMVVINPNNPCGNVYSH 223 (462)
T ss_pred HHHHHHHhcCCCCEEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcCCCcEEEEEeCCCCCCCCccCH
Confidence 99999999999999999999999999999999999999999766789999999999998889999999999999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcC--HH---HHH
Q 012095 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP--KH---FVA 322 (471)
Q Consensus 248 ~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~--~~---~i~ 322 (471)
+++++|+++|++| +++||+||+|.++.|++....++..+.. ..++|+++||||.|+++|||+||++++ +. +++
T Consensus 224 e~l~~i~~~a~~~-~i~iI~DE~Y~~l~f~~~~~~s~~~~~~-~~~vi~l~SfSK~f~~pGlRiG~~v~~~p~~~~~~~~ 301 (462)
T PLN02187 224 DHLKKVAETARKL-GIMVISDEVYDRTIFGDNPFVSMGKFAS-IVPVLTLAGISKGWVVPGWKIGWIALNDPEGVFETTK 301 (462)
T ss_pred HHHHHHHHHHHHC-CCEEEEeccccccccCCCCceeHHHhcc-CCcEEEEecchhhcCCccceeEEEEecCchhHHHHHH
Confidence 9999999999999 9999999999999987654445555543 257999999999999999999999983 33 345
Q ss_pred HHHHHHhcccC--CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCe-eeCCCcceEEeEecCCc
Q 012095 323 ACNKIQSQFTS--GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFSTY 399 (471)
Q Consensus 323 ~l~~~~~~~~~--~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~-~~~p~~g~~~~~~~~~~ 399 (471)
.+...+..+.. +++.+.|.++.++|... ..+|+++.++.++++++++.+.|+++++.. +..|+||+|+|++++..
T Consensus 302 ~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~--~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~~~~P~gg~fl~~~l~~~ 379 (462)
T PLN02187 302 VLQSIKQNLDVTPDPATIIQAALPAILEKA--DKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKPESCTYLLTKLELS 379 (462)
T ss_pred HHHHHHHhccccCCCCHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCCCCCEeEEEEeecChh
Confidence 66666665544 56899999999999742 368999999999999999999999985554 34789999999988631
Q ss_pred cCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhCCC
Q 012095 400 YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRPG 468 (471)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~~ 468 (471)
.. ..+.++.+++.+++++.||.+.||..|+.++||||+++.+++++++++++|.+++++...+
T Consensus 380 ~~------~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis~~~~~e~l~~al~rL~~~l~~~~~~ 442 (462)
T PLN02187 380 LM------DNIKDDIDFCVKLAREENLVFLPGDALGLKNWMRITIGVEAHMLEDALERLKGFCTRHAKK 442 (462)
T ss_pred hC------CCCCCHHHHHHHHHhhCCEEEECccccCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHhhhc
Confidence 00 0012466888888778899999999999889999999999999999999999999876543
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-57 Score=454.36 Aligned_cols=356 Identities=46% Similarity=0.736 Sum_probs=318.2
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cEEEeCChHHHHHHHHH
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVL 173 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~i~it~G~~~al~~~~~ 173 (471)
+++|+|+.|+|++++++.+.+++.+++.....+|++..|.++||+++++++++.+|++++++ +|++|+|+++++..+++
T Consensus 20 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~ 99 (378)
T PRK07682 20 EGVISLGVGEPDFVTPWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMR 99 (378)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHH
Confidence 46899999999998888888998888766667898899999999999999999999888886 89999999999999999
Q ss_pred HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHH
Q 012095 174 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 253 (471)
Q Consensus 174 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i 253 (471)
++++|||+|++++|+|+.|...++..|++++.++++.+++|.+|++++++++.++++++++++||||||.+++.+++++|
T Consensus 100 ~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~s~~~~~~l 179 (378)
T PRK07682 100 AIINPGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSELEEI 179 (378)
T ss_pred HhCCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCcccEEEEEECCCCCcCcCcCHHHHHHH
Confidence 99999999999999999999999999999999998766678899999999998899999999999999999999999999
Q ss_pred HHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccC
Q 012095 254 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 333 (471)
Q Consensus 254 ~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~ 333 (471)
+++|++| +++||+||+|.++.+++. ..++..+....+++++++||||.||++|+|+||+++++++++.+.+.......
T Consensus 180 ~~~~~~~-~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~i~~l~~~~~~~~~ 257 (378)
T PRK07682 180 AVIVEKH-DLIVLSDEIYAELTYDEA-YTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPVYFSEAMLKIHQYSMM 257 (378)
T ss_pred HHHHHHc-CcEEEEehhhhhcccCCC-CCChhhcccccCCEEEEecCcccccChhhhhhhhhcCHHHHHHHHHHHHhhcc
Confidence 9999999 999999999999998753 33444454445789999999999999999999999999999999887766667
Q ss_pred CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCH
Q 012095 334 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 413 (471)
Q Consensus 334 ~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~ 413 (471)
+++.+.|.++..+|++ .+.+++++++.|+++++.+.+.|+++ |+.+..|+|+||+|++++.. + .++
T Consensus 258 ~~~~~~q~a~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~p~g~~~~~~~~~~~-~---------~~~ 323 (378)
T PRK07682 258 CAPTMAQFAALEALRA---GNDDVIRMRDSYRKRRNFFVTSFNEI-GLTCHVPGGAFYAFPSISST-G---------LSS 323 (378)
T ss_pred CCCHHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHHC-CCccCCCCeeEEEEEeccCC-C---------CCH
Confidence 7899999999999986 35678999999999999999999998 88888999999999988532 0 267
Q ss_pred HHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012095 414 ESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 414 ~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~l~~~~ 466 (471)
.++++.|++++||.+.||..|+. ++++|||++.+.+++++++++|++++++++
T Consensus 324 ~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~l~~~~ 378 (378)
T PRK07682 324 EEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYATSLEQLQEAMKRMKRFVENKK 378 (378)
T ss_pred HHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHHHhhcC
Confidence 88999988777999999999975 589999999988999999999999987653
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-57 Score=456.89 Aligned_cols=366 Identities=22% Similarity=0.389 Sum_probs=313.2
Q ss_pred hcCCCeEEcCCCCCC----CCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHH
Q 012095 92 QAGVSVIRLAAGEPD----FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (471)
Q Consensus 92 ~~g~~~i~l~~g~~~----~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~ 166 (471)
..++++|+|+.|+|+ +++|+.+.+++.+++... ..+|+|..|.++||+++++++.+.+|.++++++|++|+|+++
T Consensus 29 ~~~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~ 108 (409)
T PLN00143 29 DDHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKH 108 (409)
T ss_pred CCCCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHH
Confidence 357899999999998 899999999999988764 467999999999999999999999998899999999999999
Q ss_pred HHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCC
Q 012095 167 SILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 246 (471)
Q Consensus 167 al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~ 246 (471)
++..+++++++|||.|++++|+|+.|...++..|++++.++++.+++|.+|+++|++++++++++++++|||||||.+++
T Consensus 109 al~~~~~~l~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~nP~NPTG~~~s 188 (409)
T PLN00143 109 AAEIIIKVLARPEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENTIAMVIINPGNPCGSVYS 188 (409)
T ss_pred HHHHHHHHHcCCCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcccCCEEEEEECCCCCCCCccC
Confidence 99999999999999999999999999999999999999999876678899999999998888999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEc--CHHHH---
Q 012095 247 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG--PKHFV--- 321 (471)
Q Consensus 247 ~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~--~~~~i--- 321 (471)
.+++++|+++|++| +++||+||+|.++.|++....++..+.. .+++|+++||||.|+++|+|+||+++ ++.++
T Consensus 189 ~~~~~~l~~~a~~~-~~~ii~De~Y~~l~~~~~~~~~~~~~~~-~~~vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~ 266 (409)
T PLN00143 189 YEHLNKIAETARKL-GILVIADEVYGHIVFGSKPFVPMGLFAS-IVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQIC 266 (409)
T ss_pred HHHHHHHHHHHHHc-CCeEEEEccccccccCCCCCcchhhhcc-cCcEEEEccchhhcCCCccceEEEEeeCchhhhhhH
Confidence 99999999999999 9999999999999987643334434432 46899999999999999999999998 34443
Q ss_pred ---HHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCe-eeCCCcceEEeEecC
Q 012095 322 ---AACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFS 397 (471)
Q Consensus 322 ---~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~-~~~p~~g~~~~~~~~ 397 (471)
+.+.+.... ...++.+.|.++.++|.+. ...++++.++.++++++.+.+.|.++++.. +..|+||||+|++++
T Consensus 267 ~~~~~~~~~~~~-~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p~gg~f~w~~l~ 343 (409)
T PLN00143 267 EIADSIKKALNP-APFPPTFIQAAIPEILEKT--TEDFFSKTINILRAALAFCYDKLKEIPCIMCPQKAEGAFFALVKLN 343 (409)
T ss_pred HHHHHHHHHHhc-cCCCCchHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEEEEecc
Confidence 334443332 3345889999999999742 367899999999999999999999875544 347899999999997
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhCCC
Q 012095 398 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRPG 468 (471)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~~ 468 (471)
.... ....++.+++.++++++||.+.||..|+.++|+||+++.++++++++++||++++++...+
T Consensus 344 ~~~~------~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~~~~~~~l~~al~rl~~~l~~~~~~ 408 (409)
T PLN00143 344 LLLL------EDIEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITFAVEQSSLEDGLGRLKSFCGRHAKK 408 (409)
T ss_pred hhhc------CCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEEcCCHHHHHHHHHHHHHHHHHhccC
Confidence 4200 0012567888888777899999999999889999999999999999999999999877655
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-56 Score=453.44 Aligned_cols=381 Identities=35% Similarity=0.588 Sum_probs=331.8
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~ 147 (471)
+++++....++.+..+...+.+++..++++++|+.|+|++++|+.+.+++.+.+......|++..|.++||+++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~ 82 (388)
T PRK07337 3 LAARVDAIEPFYVMELAKEAQALERAGRDIIHMGIGEPDFTAPEPVVEAAARALRRGVTQYTSALGLAPLREAIAAWYAR 82 (388)
T ss_pred hhhHhHhcCchHHHHHHHHHHHHHhcCCCEEEeCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 56667777777777777777777777889999999999998888999999988876677898889999999999999999
Q ss_pred HhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc
Q 012095 148 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 227 (471)
Q Consensus 148 ~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~ 227 (471)
.+|+.+++++|++|+|+++++..++.+++++||+|++++|+|+.+...++..|++++.++++.+++|.+|++++++.+++
T Consensus 83 ~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (388)
T PRK07337 83 RFGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGE 162 (388)
T ss_pred HhCCCCChHhEEEecCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcCc
Confidence 89988899999999999999999999999999999999999999999999999999999998767789999999999988
Q ss_pred CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCcc
Q 012095 228 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307 (471)
Q Consensus 228 ~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 307 (471)
++++|++++||||||.+++.+++++|+++|++| +++||+||+|.++.+++. ..++..+ .+++++++||||.+|++
T Consensus 163 ~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~-~~~~~~~---~~~vi~~~S~SK~~~~~ 237 (388)
T PRK07337 163 RTRGVLLASPSNPTGTSIAPDELRRIVEAVRAR-GGFTIVDEIYQGLSYDAA-PVSALSL---GDDVITINSFSKYFNMT 237 (388)
T ss_pred cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHC-CCEEEEeccccccccCCC-CcChhhc---cCCEEEEEechhhcCCc
Confidence 999999999999999999999999999999999 999999999999887653 2233332 46799999999999999
Q ss_pred chhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCee-eCC
Q 012095 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-SEP 386 (471)
Q Consensus 308 G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~-~~p 386 (471)
|+|+||+++++++++.+.+....+..+.+.+.|.++..++..+. ..++.+.++.|+++|+++.+.|+++ |+.+ ..|
T Consensus 238 G~RiG~~~~~~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~r~~~~~~L~~~-~~~~~~~p 314 (388)
T PRK07337 238 GWRLGWLVVPEALVGTFEKLAQNLFICASALAQHAALACFEPDT--LAIYERRRAEFKRRRDFIVPALESL-GFKVPVMP 314 (388)
T ss_pred hhheeeeecCHHHHHHHHHHHHHhccCCChHHHHHHHHHhccCc--hHHHHHHHHHHHHHHHHHHHHHHhc-CCccccCC
Confidence 99999999999999999988877777889999999999987532 3557888999999999999999987 7654 478
Q ss_pred CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeecCHHHHHHHHHHHHHHH
Q 012095 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAASLTTLQAAVERIKKGL 462 (471)
Q Consensus 387 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~---~~~iRis~~~~~e~i~~~~~~l~~~l 462 (471)
++|+|+|+++++...+ ...++.+++++|++++||.+.||+.|+. ++|+||+++.+++++++++++|.+++
T Consensus 315 ~~g~f~~~~~~~~~~~------~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 315 DGAFYVYADCRGVAHP------AAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYATSMSRLEEAVARLGKLF 387 (388)
T ss_pred CeeEEEEEecccccCC------CCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecCCHHHHHHHHHHHHHHh
Confidence 9999999999752100 0126778998888888999999999975 47999999998899999999998865
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-56 Score=451.92 Aligned_cols=376 Identities=27% Similarity=0.430 Sum_probs=323.9
Q ss_pred CChHHHHHHHHHHHHh--cCCCeEEcCCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHHHhCCC-
Q 012095 77 PSKTVAITDQATALAQ--AGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLS- 152 (471)
Q Consensus 77 ~~~~~~~~~~~~~~~~--~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~g~~- 152 (471)
.+++..+....+.++. .|.++|+|+.|+|++.+++.+.+++.+.+... ...|+ ..|..+||+++++++++.+|+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~i~L~~g~p~~~~~~~~~~~l~~~~~~~~~~~Y~-~~G~~~lr~aia~~~~~~~g~~~ 102 (410)
T PRK06290 24 IYKFEKIKRAKRAAKEKHPDMELIDMGVGEPDEMADESVVEVLCEEAKKPENRGYA-DNGIQEFKEAAARYMEKVFGVKD 102 (410)
T ss_pred hhHHHHHHHHHHHHhhhcCCCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCCCCCC-CCCcHHHHHHHHHHHHHHcCCCc
Confidence 3455555555555543 46689999999999999999999888776543 45685 5899999999999999989987
Q ss_pred CCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcE
Q 012095 153 YTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRL 231 (471)
Q Consensus 153 ~~~~-~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~ 231 (471)
++++ +|++|+|+++++..++.+++++||.|++++|+|+.|...++..|++++.++++.+++|.+|++++++++.+++++
T Consensus 103 ~~~~~~I~it~Gs~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~k~ 182 (410)
T PRK06290 103 IDPVTEVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKEKAKL 182 (410)
T ss_pred CCCcceEEEccCHHHHHHHHHHHhCCCCCEEEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcccceE
Confidence 8886 899999999999999999999999999999999999999999999999999987778889999999998888999
Q ss_pred EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhh
Q 012095 232 LILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRL 311 (471)
Q Consensus 232 i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~ 311 (471)
|++++||||||.++|.+++++|+++|++| +++||+||+|.++.|++. ..++..+....+++|+++||||.+|++|+|+
T Consensus 183 i~l~nP~NPTG~v~s~e~l~~l~~la~~~-~~~iI~DEaY~~~~~~~~-~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRi 260 (410)
T PRK06290 183 LYLNYPNNPTGAVATKEFYEEVVDFAKEN-NIIVVQDAAYAALTFDGK-PLSFLSVPGAKEVGVEIHSLSKAYNMTGWRL 260 (410)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHc-CeEEEEecchhhceeCCC-CcChhcCCCccccEEEEeechhhcCCchhhe
Confidence 99999999999999999999999999999 999999999999988652 3455555444578899999999999999999
Q ss_pred eeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceE
Q 012095 312 GYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY 391 (471)
Q Consensus 312 G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~ 391 (471)
||+++++++++.+.+....+..+++.++|.++..+|.+ ..|+++.++.|+++++.+.+.|+++ |+.+.+|+||||
T Consensus 261 G~ii~~~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~g~f~ 335 (410)
T PRK06290 261 AFVVGNELIVKAFATVKDNNDSGQFIAIQKAGIYALDH----PEITEKIREKYSRRLDKLVKILNEV-GFKAEMPGGTFY 335 (410)
T ss_pred EeEEeCHHHHHHHHHHHhccccCCcHHHHHHHHHHhhC----cHHHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCeeeE
Confidence 99999999999999888877777888999999999985 4788999999999999999999998 899889999999
Q ss_pred EeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec---CHHHHHHHHHHHHHHHHhhC
Q 012095 392 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~---~~e~i~~~~~~l~~~l~~~~ 466 (471)
+|+++|+.... +.+ ..++.+++++|+++++|.++||+.|+ +|+||+++. ++++.+++++.|.+.|.++.
T Consensus 336 l~v~lp~~~~~---~~~-~~~~~~~~~~Ll~~~~v~~~p~~~~~--~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~~ 407 (410)
T PRK06290 336 LYVKAPKGTKS---GIK-FENAEEFSQYLIKEKLISTVPWDDAG--HFLRFSVTFEAKDEEEEDRILEEIKRRLSDVE 407 (410)
T ss_pred EEEECCCcccc---CCC-CCCHHHHHHHHHHhCCEEEECCcccc--CeEEEEEEcccccccchhHHHHHHHHHHhhcc
Confidence 99999853210 000 02678999999999889999998764 799999995 77889999999999887654
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-56 Score=454.09 Aligned_cols=365 Identities=24% Similarity=0.425 Sum_probs=317.9
Q ss_pred hcCCCeEEcCCCCCC----CCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHH
Q 012095 92 QAGVSVIRLAAGEPD----FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (471)
Q Consensus 92 ~~g~~~i~l~~g~~~----~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~ 166 (471)
..|+++|+|+.|+|+ +++|+.+.+++.+++... ..+|++..|.++||+++++++++.+|..+++++|++|+|+++
T Consensus 28 ~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 107 (409)
T PLN02656 28 ENGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQ 107 (409)
T ss_pred ccCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHH
Confidence 468899999999998 788999999999988764 568999999999999999999998898899999999999999
Q ss_pred HHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCC
Q 012095 167 SILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 246 (471)
Q Consensus 167 al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~ 246 (471)
++..++.+++++||+|++++|+|+.|...++..|++++.++++.+++|.+|++.++++++++++++++++||||||.+++
T Consensus 108 al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~s 187 (409)
T PLN02656 108 AIDVALSMLARPGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVALVIINPGNPCGNVYS 187 (409)
T ss_pred HHHHHHHHHhCCCCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccCceEEEEECCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999976677899999999999888999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcC--------H
Q 012095 247 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP--------K 318 (471)
Q Consensus 247 ~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~--------~ 318 (471)
.+++++|+++|++| +++||+||+|.++.|++....++..+.. .+++|+++||||.|+++|+|+||++++ +
T Consensus 188 ~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~ 265 (409)
T PLN02656 188 YQHLKKIAETAEKL-KILVIADEVYGHLAFGSNPFVPMGVFGS-IVPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDP 265 (409)
T ss_pred HHHHHHHHHHHHHc-CCEEEEehhhhhcccCCCCcccHHHhcc-cCcEEEEcccchhccCcceeEEEEEEeCcccccccH
Confidence 99999999999999 9999999999999987654444444433 468999999999999999999999984 5
Q ss_pred HHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCe-eeCCCcceEEeEecC
Q 012095 319 HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFS 397 (471)
Q Consensus 319 ~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~-~~~p~~g~~~~~~~~ 397 (471)
++++++.+.... ..+++.+.|.++..+|++. .+.++++.++.++++|+.+.+.|++++++. +..|+||||+|++++
T Consensus 266 ~~~~~~~~~~~~-~~~~s~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p~gg~~~w~~l~ 342 (409)
T PLN02656 266 KIVERIKKYFDI-LGGPATFIQAAVPTILEQT--DESFFKKTINILKQSSDICCDRIKEIPCITCPHKPEGSMAVMVKLN 342 (409)
T ss_pred HHHHHHHHHHhh-hcCCCHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCCCeEEEEEEecc
Confidence 788888876554 3468899999999999752 357899999999999999999999886554 357999999999986
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhCC
Q 012095 398 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRP 467 (471)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~ 467 (471)
...- ....++.+++..++++.||.+.||+.|+.++|+||+++.+++++++++++|++++.+.+.
T Consensus 343 ~~~~------~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~~~~~e~l~eal~rl~~~~~~~~~ 406 (409)
T PLN02656 343 LSLL------EDISDDIDFCFKLAREESVIILPGTAVGLKNWLRITFAADPSSLEEALGRIKSFYLRHSK 406 (409)
T ss_pred hhhc------CCCCCHHHHHHHHHHhCCEEEecchhcCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHhcc
Confidence 3200 000135567766777789999999999988999999999999999999999999886653
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-57 Score=454.12 Aligned_cols=352 Identities=23% Similarity=0.314 Sum_probs=318.2
Q ss_pred HHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 90 LAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 90 ~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
+...+.++++|+.|+|++.+|+.+ +++.+++.+...+|++..|.++||++|++++. + +++++|++|+|+++++.
T Consensus 21 ~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~---~--~~~~~vi~t~G~~~al~ 94 (373)
T PRK07324 21 YDIAESCIDSLTLEELLALAGKNP-EAFYQELGQKKLTYGWIEGSPEFKEAVASLYQ---N--VKPENILQTNGATGANF 94 (373)
T ss_pred cccccCCCCCCcHHHHHhccCcch-HHHHHHHhcCCccCCCCCCCHHHHHHHHHHhc---C--CChhhEEEcCChHHHHH
Confidence 334577899999999999988888 88888888777899999999999999999874 2 57899999999999999
Q ss_pred HHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHH
Q 012095 170 QAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNL 249 (471)
Q Consensus 170 ~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~ 249 (471)
.++.+++++||+|+++.|+|..+...++..|++++.+|++.+++|.+|++++++.+++++|+|++++||||||.+++.++
T Consensus 95 ~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~~p~NPtG~~~~~~~ 174 (373)
T PRK07324 95 LVLYALVEPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAY 174 (373)
T ss_pred HHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCCCCCcEEEEeCCCCCCCCCCCHHH
Confidence 99999999999999999999999999999999999999987778899999999999889999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHh
Q 012095 250 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS 329 (471)
Q Consensus 250 l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~ 329 (471)
+++|+++|++| +++||+||+|.++.+++. ..++... .+++|+++||||.+|++|||+||+++++++++.+.+.+.
T Consensus 175 l~~i~~~a~~~-~~~ii~De~y~~l~~~~~-~~s~~~~---~~~~I~~~s~SK~~~~~G~RiG~i~~~~~li~~~~~~~~ 249 (373)
T PRK07324 175 LEEIVEIARSV-DAYVLSDEVYRPLDEDGS-TPSIADL---YEKGISTNSMSKTYSLPGIRVGWIAANEEVIDILRKYRD 249 (373)
T ss_pred HHHHHHHHHHC-CCEEEEEccccccccCCC-CCChhhc---cCCEEEEecchhhcCCccceeEEEecCHHHHHHHHHHhC
Confidence 99999999999 999999999999887643 3333332 468899999999999999999999999999999999988
Q ss_pred cccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCC
Q 012095 330 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK 409 (471)
Q Consensus 330 ~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~ 409 (471)
..+.+++.++|.++..+|+. .+.++++.++.++++++.+.+.|.+.+++.+..|++|+|+|+.++..
T Consensus 250 ~~~~~~~~~~q~~a~~~l~~---~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~gg~~~~i~~~~~---------- 316 (373)
T PRK07324 250 YTMICAGVFDDMLASLALEH---RDAILERNRKIVRTNLAILDEWVAKEPRVSYVKPKAVSTSFVKLDVD---------- 316 (373)
T ss_pred cEEecCChHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHHHHHHhcCCCceEECCCceEEEEEEeCCC----------
Confidence 77788999999999999875 46789999999999999999999988788999999999999988743
Q ss_pred CCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012095 410 IENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 410 ~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~~~~ 466 (471)
.++.+|+++|++++||.+.||+.|+.++++||+++.+++.+++++++|+++++++.
T Consensus 317 -~~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis~~~~~~~l~~~l~rl~~~l~~~~ 372 (373)
T PRK07324 317 -MPSEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYCCDTETLKKGLKKLSEFLREFD 372 (373)
T ss_pred -CCHHHHHHHHHHhcCEEEECccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHhcc
Confidence 26789999998888999999999998899999999999999999999999998754
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-56 Score=452.64 Aligned_cols=370 Identities=25% Similarity=0.452 Sum_probs=319.8
Q ss_pred cccccCCChHHHHHHHHHHHH-hcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 012095 71 RVNAVKPSKTVAITDQATALA-QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEEN 149 (471)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~-~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~ 149 (471)
++...+.+.+.++...+.++. ..|+++|+|+.|+|++++|+.+.+++.+.+. ....|++..|.++||+++++++.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~a~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~ 81 (393)
T TIGR03538 3 NLSRLQPYPFEKLAALLAGVTPPASKPPIALSIGEPKHPTPAFVLEALRENLH-GLSTYPTTKGLPELRQAIARWLERRF 81 (393)
T ss_pred hhhhCCccHHHHHHHHHHhhhhhcCCCeEEecCCCCCCCCCHHHHHHHHHHhh-ccCCCCCCCCCHHHHHHHHHHHHHhh
Confidence 344555666667766666553 3678999999999999999999999998765 46789999999999999999999988
Q ss_pred CCC--CCCC-cEEEeCChHHHHHHHHHHhcCCCCe--EEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhh
Q 012095 150 GLS--YTPD-QILVSNGAKQSILQAVLAVCSPGDE--VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESK 224 (471)
Q Consensus 150 g~~--~~~~-~i~it~G~~~al~~~~~~l~~~gd~--Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~ 224 (471)
|++ ++++ +|++|+|+++++..+++++++|||. |++++|+|+.|...++..|++++.++++++++|.+|+++++++
T Consensus 82 ~~~~~~~~~~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 161 (393)
T TIGR03538 82 DLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPES 161 (393)
T ss_pred CCcccCCCCceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHH
Confidence 876 6885 8999999999999999999999986 9999999999999999999999999998777899999999998
Q ss_pred hccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCC-Cccccc-c---CC-CCCCceEEEe
Q 012095 225 LTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA-THTSFA-S---LP-GMWERTLTVN 298 (471)
Q Consensus 225 l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~-~~~~~~-~---~~-~~~~~~i~~~ 298 (471)
+.+++|+|+++|||||||.+++.+++++|+++|++| +++||+||+|.++.+++. ...++. . .. ...+++|+++
T Consensus 162 ~~~~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~ 240 (393)
T TIGR03538 162 VWRRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQY-GFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFH 240 (393)
T ss_pred HhhcceEEEEeCCCCCcCcccCHHHHHHHHHHHHHC-CEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEe
Confidence 878899999999999999999999999999999999 999999999999887642 222221 1 11 1357899999
Q ss_pred cCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCC
Q 012095 299 GFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL 378 (471)
Q Consensus 299 S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 378 (471)
||||.++++|+|+||+++++++++.+.+.......+++.+.|.++.+.+.. ++++++.++.|+++++.+.+.|++.
T Consensus 241 S~SK~~~~~GlRvG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~L~~~ 316 (393)
T TIGR03538 241 SLSKRSNLPGLRSGFVAGDAEILKAFLRYRTYHGCAMPIPTQLASIAAWND----EQHVRENRALYREKFAAVLEILGQV 316 (393)
T ss_pred cchhhcCCcccceEEEecCHHHHHHHHHHHHhhccCcCHHHHHHHHHHhcC----hHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999998887766667899999998888863 6789999999999999999999875
Q ss_pred CCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--------CCcEEEEeecCHHH
Q 012095 379 EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--------DTCIRISYAASLTT 450 (471)
Q Consensus 379 ~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--------~~~iRis~~~~~e~ 450 (471)
+.+..|++|+|+|++++ . ++.++++.|++++||.+.||+.|+. .+++||+++.++++
T Consensus 317 --~~~~~p~gg~f~~~~~~-~------------~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~~~~~ 381 (393)
T TIGR03538 317 --LDLELPDAGFYLWPKVP-G------------DDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVAPLEE 381 (393)
T ss_pred --CcccCCCeeEEEEEECC-C------------CHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecCCHHH
Confidence 45667999999999997 2 5678999988878999999998852 36999999998999
Q ss_pred HHHHHHHHHHH
Q 012095 451 LQAAVERIKKG 461 (471)
Q Consensus 451 i~~~~~~l~~~ 461 (471)
+++++++|+++
T Consensus 382 l~~~l~~l~~~ 392 (393)
T TIGR03538 382 CVEAAERIRSF 392 (393)
T ss_pred HHHHHHHHHHh
Confidence 99999999875
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-56 Score=449.85 Aligned_cols=390 Identities=51% Similarity=0.811 Sum_probs=346.6
Q ss_pred ccccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHH
Q 012095 66 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKL 145 (471)
Q Consensus 66 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~ 145 (471)
+++|+++..+.++.+.++...+..+...+.++++|+.|+|++++++.+.+++.+.+.+...+|++..|..+||+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~ 81 (393)
T PRK05764 2 MKLSKRVSRVTPSATLAVTAKAKELKAQGRDVISLGAGEPDFDTPEHIKEAAIEALDDGKTKYTPAAGIPELREAIAAKL 81 (393)
T ss_pred cchhhhhhhcCchHHHHHHHHHHHHHhccCCEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHH
Confidence 34788999999998888888877777778899999999999998899999999888766678999999999999999999
Q ss_pred HHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhh
Q 012095 146 KEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL 225 (471)
Q Consensus 146 ~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l 225 (471)
.+.+|..+++++|++|+|+++++..++.+++++||.|++++|+|..|..+++.+|++++.++++.+++|.+|++.+++++
T Consensus 82 ~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l 161 (393)
T PRK05764 82 KRDNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAI 161 (393)
T ss_pred HHHhCCCCCHHHEEEeCCcHHHHHHHHHHhcCCCCEEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhh
Confidence 99988888899999999999999999999999999999999999999999999999999999987677899999999999
Q ss_pred ccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccC-CCCCCceEEEecCCccc
Q 012095 226 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAF 304 (471)
Q Consensus 226 ~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~-~~~~~~~i~~~S~SK~~ 304 (471)
+++++++++++|+||||.++|.+++++|+++|++| +++||+||+|.++.+++....++..+ ....+++++++||||.+
T Consensus 162 ~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 240 (393)
T PRK05764 162 TPKTKALILNSPSNPTGAVYSPEELEAIADVAVEH-DIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAY 240 (393)
T ss_pred CccceEEEEECCCCCCCcccCHHHHHHHHHHHHHC-CcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccc
Confidence 88899999999999999999999999999999999 99999999999998865433444444 23357899999999999
Q ss_pred CccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeee
Q 012095 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (471)
Q Consensus 305 g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~ 384 (471)
|++|+|+||+++++++++.+.........+++.+.|.++..+|.. ..++++++++.++++++.+.+.|++++|+.+.
T Consensus 241 ~~~G~RiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 317 (393)
T PRK05764 241 AMTGWRLGYAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAALNG---PQDEVEEMRQAFEERRDLMVDGLNEIPGLECP 317 (393)
T ss_pred cCccceeEEEecCHHHHHHHHHHHhhcccCCChHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHHHHHHhhCCCCccc
Confidence 999999999999999999999888777778999999999999974 36889999999999999999999998899988
Q ss_pred CCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012095 385 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 385 ~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~~ 464 (471)
.|+|++|+|++++..... .+ .++.++.+.|++++||.+.||..|+.++++|++++.+++++++++++|.+++++
T Consensus 318 ~~~g~~~~~~~~~~~~~~--~~----~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis~~~~~~~~~~~i~~l~~~~~~ 391 (393)
T PRK05764 318 KPEGAFYVFPNVSKLLGK--SI----TDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLSYATSLEDLEEGLERIERFLES 391 (393)
T ss_pred CCCcceEEEEeccccccc--cc----CCHHHHHHHHHHhCCEEEccccccCCCCEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 999999999999753210 00 135789999888789999999999888999999999999999999999999876
Q ss_pred h
Q 012095 465 L 465 (471)
Q Consensus 465 ~ 465 (471)
.
T Consensus 392 ~ 392 (393)
T PRK05764 392 L 392 (393)
T ss_pred h
Confidence 4
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-56 Score=449.47 Aligned_cols=379 Identities=39% Similarity=0.634 Sum_probs=330.8
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~ 147 (471)
++.++.......+..+.+.. +...++|+|+.|+|++++++.+.+++.+++......|++..|.++||+++++++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~----~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~ 85 (391)
T PRK08361 10 IAGRINLIQRSKIRELFERA----SKMENVISLGIGEPDFDTPKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKK 85 (391)
T ss_pred hhHHHHhCCccHHHHHHHHH----HhhcCeEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHH
Confidence 46666666655555544332 22346899999999998889999999988877677899999999999999999998
Q ss_pred HhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc
Q 012095 148 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 227 (471)
Q Consensus 148 ~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~ 227 (471)
.+|..+++++|++|+|+++++..++.+++++||.|++++|+|..+...++..|++++.++++.+++|.+|++.+++.+++
T Consensus 86 ~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~ 165 (391)
T PRK08361 86 FYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELITK 165 (391)
T ss_pred HhCCCCCcccEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhccc
Confidence 88988899999999999999999999999999999999999999999999999999999998777789999999999998
Q ss_pred CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCcc
Q 012095 228 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307 (471)
Q Consensus 228 ~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 307 (471)
+++++++++||||||.+++.+++++|+++|+++ +++||+||+|.++.+++....++..+. .+++++++||||.||++
T Consensus 166 ~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~--~~~~i~~~s~SK~~~~~ 242 (391)
T PRK08361 166 RTRMIVINYPNNPTGATLDKEVAKAIADIAEDY-NIYILSDEPYEHFLYEGAKHYPMIKYA--PDNTILANSFSKTFAMT 242 (391)
T ss_pred ccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHc-CeEEEEEcccccceeCCCCCCCHhhcC--CCCEEEEecCchhcCCc
Confidence 999999999999999999999999999999999 999999999999988654444444432 36899999999999999
Q ss_pred chhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC
Q 012095 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (471)
Q Consensus 308 G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~ 387 (471)
|+|+||+++++++++.+.+.......+++.+.|.++..+|.++.. .+++++.++.++++++.+.+.|++++|+.+..|+
T Consensus 243 GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~ 321 (391)
T PRK08361 243 GWRLGFVIAPEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKES-WKAVEEMRKEYNERRKLVLKRLKEMPHIKVFEPK 321 (391)
T ss_pred HhhhhhhccCHHHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcc-cHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCC
Confidence 999999999999999988877666677899999999999986432 3678999999999999999999998889999999
Q ss_pred cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012095 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 388 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~l~~ 464 (471)
||||+|+++++.. .++.++++.|++++||.+.||..|+. +++|||+++.+++++++++++|++++++
T Consensus 322 g~~~~~~~l~~~~----------~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~l~~ 390 (391)
T PRK08361 322 GAFYVFANIDETG----------MSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYATSKEKLIEAMERMEKALEE 390 (391)
T ss_pred EEEEEEEECCCCC----------CCHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 9999999997420 26788999888778999999999975 4799999999888999999999998865
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-56 Score=448.41 Aligned_cols=373 Identities=33% Similarity=0.539 Sum_probs=326.0
Q ss_pred ccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCC
Q 012095 72 VNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGL 151 (471)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~ 151 (471)
+....++.+.++...+. ..+++|+|+.|+|++++|+.+.+++.+.+.+....|++..|.++||+++++++++.+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~----~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~ 80 (382)
T PRK06108 5 ARALPESGIREVANAGR----GREGVLPLWFGESDLPTPDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGV 80 (382)
T ss_pred hhhCCchHHHHHHHHHh----ccCCeEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 33444444444433321 23468999999999999999999999988776677999999999999999999998898
Q ss_pred CCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCC-CCCcCCHHHHHhhhccCCc
Q 012095 152 SYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS-ENFLLDPKVLESKLTEKSR 230 (471)
Q Consensus 152 ~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~ld~e~l~~~l~~~~~ 230 (471)
.+++++|++|+|+++++..++.+++++||.|++++|+|+.|...++..|++++.+|++.+ ++|.+|++++++.++++++
T Consensus 81 ~~~~~~i~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~ 160 (382)
T PRK06108 81 ATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITPRTR 160 (382)
T ss_pred CcCcceEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCccce
Confidence 889999999999999999999999999999999999999999999999999999999753 4688999999999988899
Q ss_pred EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccC-CCCccccccCCCCCCceEEEecCCcccCccch
Q 012095 231 LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA-PATHTSFASLPGMWERTLTVNGFSKAFAMTGW 309 (471)
Q Consensus 231 ~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~-~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~ 309 (471)
+|++++||||||.+++.+++++|+++|+++ +++||+||+|.++.++ +...+++..+....+++++++||||.||++|+
T Consensus 161 ~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~ 239 (382)
T PRK06108 161 ALFINSPNNPTGWTASRDDLRAILAHCRRH-GLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGW 239 (382)
T ss_pred EEEEECCCCCCCcccCHHHHHHHHHHHHHC-CcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCccc
Confidence 999999999999999999999999999999 9999999999999886 33334444544435789999999999999999
Q ss_pred hheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcc
Q 012095 310 RLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGA 389 (471)
Q Consensus 310 R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g 389 (471)
|+||+++++++++.+.+.......+++.+.|.++..+|.. ..+++++++++++++++.+.+.|++++|+.+..|++|
T Consensus 240 RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g 316 (382)
T PRK06108 240 RLGWLVAPPALGQVLEKLIEYNTSCVAQFVQRAAVAALDE---GEDFVAELVARLRRSRDHLVDALRALPGVEVAKPDGA 316 (382)
T ss_pred ceeeeeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCee
Confidence 9999999999999998876655677899999999999986 3678899999999999999999998888999899999
Q ss_pred eEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012095 390 FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLL 463 (471)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~l~ 463 (471)
+|+|+++++. .+..+++++|++++||.+.||..|+. ++++|+|++.+++++++++++|+++++
T Consensus 317 ~~~~~~l~~~-----------~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~l~ 381 (382)
T PRK06108 317 MYAFFRIPGV-----------TDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFARDPARLDEAVERLRRFLA 381 (382)
T ss_pred EEEEEeCCCC-----------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 9999999753 26778999998878999999998864 579999999998999999999999875
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-56 Score=447.99 Aligned_cols=351 Identities=28% Similarity=0.505 Sum_probs=310.0
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcEEEeCChHHHHHHHH
Q 012095 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSILQAV 172 (471)
Q Consensus 94 g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~-~~i~it~G~~~al~~~~ 172 (471)
++++|+|+.|+|++++++.+.+++.+++.....+|+|..|.++||+++++++++.+|.++++ ++|++|+|+++++..++
T Consensus 28 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~ 107 (384)
T PRK12414 28 QHDALNLSQGAPNFAPDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAI 107 (384)
T ss_pred hCCeEEcCCCCCCCCCCHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHH
Confidence 35799999999999989999999998877666889999999999999999999999987766 68999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHH
Q 012095 173 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 252 (471)
Q Consensus 173 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~ 252 (471)
+++++|||+|++++|+|..|...++.+|++++.++++. ++|.+|++.+++++++++++|++++||||||.+++.+++++
T Consensus 108 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~v~i~~p~NPTG~~~s~~~~~~ 186 (384)
T PRK12414 108 SALVHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSP-EDFRVNWDEVAAAITPRTRMIIVNTPHNPSATVFSAADLAR 186 (384)
T ss_pred HHhcCCCCEEEEeCCCccchHHHHHHcCCEEEEEecCc-cccccCHHHHHhhcCcccEEEEEcCCCCCCCcCCCHHHHHH
Confidence 99999999999999999999999999999999999864 45789999999999888999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhccc
Q 012095 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 332 (471)
Q Consensus 253 i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~ 332 (471)
|+++|++| +++||+||+|.++.|++....++..++...+++|+++||||.||++|+|+||+++++++++.+.+......
T Consensus 187 i~~~a~~~-~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~~~l~~~l~~~~~~~~ 265 (384)
T PRK12414 187 LAQLTRNT-DIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPAELMDEIRKVHQFMV 265 (384)
T ss_pred HHHHHHHC-CeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEecCHHHHHHHHHHHhhee
Confidence 99999999 99999999999999876444455555444578999999999999999999999999999999999887777
Q ss_pred CCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCC
Q 012095 333 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 412 (471)
Q Consensus 333 ~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~ 412 (471)
.+++.+.|.++..+|.. ..+..+.++.|+++|+.+.+.|++. |+.+.+|.||||+|++++.... .+
T Consensus 266 ~~~s~~~q~a~~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~gg~~~~~~~~~~~~---------~~ 331 (384)
T PRK12414 266 FSADTPMQHAFAEALAE----PASYLGLGAFYQRKRDLLARELAGS-RFELLPSEGSFFMLARFRHFSD---------ES 331 (384)
T ss_pred cCCCcHHHHHHHHHhcC----ChHHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCcceEEEEcccccCC---------CC
Confidence 78999999999999975 2334567889999999999999998 8888899999999999874210 14
Q ss_pred HHHHHHHHHHcCCEEEECCCCCCC----CCcEEEEeecCHHHHHHHHHHHHH
Q 012095 413 SESLCRYLLDKAQVALVPGDAFGD----DTCIRISYAASLTTLQAAVERIKK 460 (471)
Q Consensus 413 ~~~l~~~Ll~~~gV~v~pg~~f~~----~~~iRis~~~~~e~i~~~~~~l~~ 460 (471)
+.+++..+++++||.+.||+.|+. ++++||+++.+++++++++++|.+
T Consensus 332 ~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~~~rl~~ 383 (384)
T PRK12414 332 DSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSKDDATLVEGARRLCS 383 (384)
T ss_pred HHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecCCHHHHHHHHHHHhh
Confidence 667887777778999999998863 479999999999999999999974
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-56 Score=448.82 Aligned_cols=377 Identities=27% Similarity=0.490 Sum_probs=326.8
Q ss_pred cccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHH
Q 012095 69 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEE 148 (471)
Q Consensus 69 s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~ 148 (471)
++++..+.++.+..+.+... ..++|+|+.|.|+.++|+.+.+++.+.+.++..+|++..|.++||+++++++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~-----~~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~ 79 (387)
T PRK08912 5 NPVFADLPTTIFEVMSQLAR-----EHGAINLGQGFPDDPGPEDVRRAAADALLDGSNQYPPMMGLPELRQAVAAHYARF 79 (387)
T ss_pred hHHHhhCCCCHHHHHHHHHh-----hCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 45566666665555443332 2468999999999888888888888877666688999999999999999999988
Q ss_pred hCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc
Q 012095 149 NGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 227 (471)
Q Consensus 149 ~g~~~~~~-~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~ 227 (471)
+|++++++ +|++|+|+++++..++.+++++||+|++++|+|+.|...++..|++++.++++. ++|.+|++.+++.+++
T Consensus 80 ~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~ 158 (387)
T PRK08912 80 QGLDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRLEP-PHWRLPRAALAAAFSP 158 (387)
T ss_pred hCCCCCCcccEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCc-ccCcCCHHHHHHHhCc
Confidence 99888998 999999999999999999999999999999999999999999999999999864 4578999999999988
Q ss_pred CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCcc
Q 012095 228 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307 (471)
Q Consensus 228 ~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 307 (471)
+++++++++||||||.++|.+++++|+++|++| +++||+||+|.++.|++....++..+++..+++++++||||.||++
T Consensus 159 ~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 237 (387)
T PRK08912 159 RTKAVLLNNPLNPAGKVFPREELALLAEFCQRH-DAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLT 237 (387)
T ss_pred cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHC-CeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCc
Confidence 999999999999999999999999999999999 9999999999999887644455555544457899999999999999
Q ss_pred chhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC
Q 012095 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (471)
Q Consensus 308 G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~ 387 (471)
|+|+||+++++++++.+........++.++..|.++..+|.. .++|++++++.++++++.+.+.|+++ |+.+.+|+
T Consensus 238 GlRiG~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 313 (387)
T PRK08912 238 GWKVGFVCAAPPLLRVLAKAHQFLTFTTPPNLQAAVAYGLGK---PDDYFEGMRADLARSRDRLAAGLRRI-GFPVLPSQ 313 (387)
T ss_pred CceeEEEecCHHHHHHHHHHHhhccccCChHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCC
Confidence 999999999999999998877766667788889888888864 47889999999999999999999998 88888899
Q ss_pred cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC----CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012095 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD----DTCIRISYAASLTTLQAAVERIKKGLL 463 (471)
Q Consensus 388 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~----~~~iRis~~~~~e~i~~~~~~l~~~l~ 463 (471)
|+||+|+++++... ..++.++++.|++++||.+.||..|+. .+|+||+++.+++++++++++|.++++
T Consensus 314 g~~~l~~~l~~~~~--------~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~~~~~l~~~l~rl~~~l~ 385 (387)
T PRK08912 314 GTYFLTVDLAPLGL--------AEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAKRDATLDEAVERLAAARR 385 (387)
T ss_pred cceEEEecccccCC--------CCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 99999999975200 026788999988878999999999853 479999999988999999999999876
Q ss_pred h
Q 012095 464 T 464 (471)
Q Consensus 464 ~ 464 (471)
+
T Consensus 386 ~ 386 (387)
T PRK08912 386 R 386 (387)
T ss_pred c
Confidence 4
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-56 Score=450.51 Aligned_cols=363 Identities=26% Similarity=0.455 Sum_probs=315.3
Q ss_pred cCCCeEEcCCCCCC----CCChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHHHh------CCCCCCCcEEEe
Q 012095 93 AGVSVIRLAAGEPD----FDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEEN------GLSYTPDQILVS 161 (471)
Q Consensus 93 ~g~~~i~l~~g~~~----~~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~------g~~~~~~~i~it 161 (471)
.|+++|+|+.|+|+ +.+|+.+.+++.+.+.. ...+|++..|.++||+++++++++.+ |..+++++|++|
T Consensus 31 ~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it 110 (412)
T PTZ00433 31 SPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLC 110 (412)
T ss_pred CCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhhEEEe
Confidence 67899999999987 45788999999887764 35789888899999999999998765 466889999999
Q ss_pred CChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCc
Q 012095 162 NGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT 241 (471)
Q Consensus 162 ~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPt 241 (471)
+|+++++..++.+++++||+|++++|+|..|...++..|++++.++++.+++|++|++++++++++++++|+++||||||
T Consensus 111 ~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPt 190 (412)
T PTZ00433 111 SGVSHAILMALTALCDEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDDRTKALIMTNPSNPC 190 (412)
T ss_pred CChHHHHHHHHHHhcCCCCEEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhccCceEEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999876778999999999998889999999999999
Q ss_pred ccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEc--C--
Q 012095 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG--P-- 317 (471)
Q Consensus 242 G~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~--~-- 317 (471)
|.+++.+++++|+++|++| |++||+||+|.++.|++....++..++. ..++|+++||||.||++|+|+||+++ +
T Consensus 191 G~~~s~~~~~~l~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~SfSK~~~~pGlRlG~~i~~~p~~ 268 (412)
T PTZ00433 191 GSNFSRKHVEDIIRLCEEL-RLPLISDEIYAGMVFNGATFTSVADFDT-TVPRVILGGTAKNLVVPGWRLGWLLLVDPHG 268 (412)
T ss_pred CcccCHHHHHHHHHHHHHc-CCeEEEeccccccccCCCCccchhhccC-CCceEEEccchhhcCCCCeeEEEEEEeCCcc
Confidence 9999999999999999999 9999999999999987644445555543 24689999999999999999999997 2
Q ss_pred --HHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEe
Q 012095 318 --KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFID 395 (471)
Q Consensus 318 --~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~ 395 (471)
+++++.+.+... ...+++++.|.++..+|.+. .+.|+++.++.++++++.+.+.|++..|+.+..|+||+|+|++
T Consensus 269 ~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~f~~~~ 345 (412)
T PTZ00433 269 NGGDFLDGMKRLGM-LVCGPCSVVQAALGEALLNT--PQEHLEQIVAKLEEGAMVLYNHIGECIGLSPTMPRGSMFLMSR 345 (412)
T ss_pred cHHHHHHHHHHHhh-ccCCCChHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCeeEEEEEE
Confidence 467777777554 23578999999999999752 3688999999999999999999998768888899999999999
Q ss_pred cCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012095 396 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~~~~ 466 (471)
++... .....++.++++.|++++||.+.||+.|+.++|+||+++..++++++++++|.++++..+
T Consensus 346 l~~~~------~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~l~~al~~l~~~~~~~~ 410 (412)
T PTZ00433 346 LDLEK------FRDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTISRPVEVLREAVERIKAFCERHK 410 (412)
T ss_pred echhh------cCCCCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhc
Confidence 87410 000115678999998777999999999988899999999988999999999999998765
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-55 Score=444.84 Aligned_cols=372 Identities=29% Similarity=0.490 Sum_probs=324.4
Q ss_pred cccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHH
Q 012095 69 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEE 148 (471)
Q Consensus 69 s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~ 148 (471)
.+++..+..+.+..+...+ ++.++|+|+.|.|++++++.+.+++.+.+..+..+|++..|.++||+++++++++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~-----~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~ 83 (386)
T PRK09082 9 QSKLPNVGTTIFTVMSALA-----AEHGAINLSQGFPDFDGPPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARL 83 (386)
T ss_pred hhHhhccCccHHHHHHHHH-----hhCCEEEecCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 3445555555443332222 23568999999999988889999999888766788999999999999999999998
Q ss_pred hCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc
Q 012095 149 NGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 227 (471)
Q Consensus 149 ~g~~~~~~-~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~ 227 (471)
+|.+++++ +|++|+|+++++..++.+++++||+|++++|+|..+...++..|++++.++++. .+|.+|++++++.+++
T Consensus 84 ~~~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~~~~ 162 (386)
T PRK09082 84 YGRQYDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYAPAIELAGGRAVRVALQP-PDFRVDWQRFAAAISP 162 (386)
T ss_pred hCCCCCCCCcEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCc-ccccCCHHHHHHhcCc
Confidence 89877775 899999999999999999999999999999999999999999999999999964 3588999999999988
Q ss_pred CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCcc
Q 012095 228 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307 (471)
Q Consensus 228 ~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 307 (471)
+++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++....++..+++..+++++++||||.||++
T Consensus 163 ~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~-~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~ 241 (386)
T PRK09082 163 RTRLIILNTPHNPSGTVWSAADMRALWQLIAGT-DIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVT 241 (386)
T ss_pred cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHC-CEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccch
Confidence 899999999999999999999999999999999 9999999999999987655566666665568999999999999999
Q ss_pred chhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC
Q 012095 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (471)
Q Consensus 308 G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~ 387 (471)
|+|+||+++++++++.+.+......++++.+.|.++..++.. .+++++++++.|+++++++.+.|++. |+++.+|+
T Consensus 242 G~RiG~iv~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~ 317 (386)
T PRK09082 242 GWKVGYCVAPAALSAEFRKVHQYNTFTVNTPAQLALADYLRA---EPEHYLELPAFYQAKRDRFRAALANS-RFKLLPCE 317 (386)
T ss_pred hhhhhhhhCCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCC
Confidence 999999999999999999988777778999999999998874 36889999999999999999999986 89998999
Q ss_pred cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC----CCcEEEEeecCHHHHHHHHHHHHH
Q 012095 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD----DTCIRISYAASLTTLQAAVERIKK 460 (471)
Q Consensus 388 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~----~~~iRis~~~~~e~i~~~~~~l~~ 460 (471)
||||+|+++++..+ .++.+++++|++++||.+.||+.|+. .+++|++++.+++++++++++|++
T Consensus 318 g~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~~~~~l~~~~~rl~~ 385 (386)
T PRK09082 318 GTYFQLVDYSAISD---------LDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAKQEETLDAAAERLCQ 385 (386)
T ss_pred eeEEEEEeccccCC---------CCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecCCHHHHHHHHHHHhh
Confidence 99999999974201 26789999988888999999998853 379999999998999999999875
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-55 Score=448.58 Aligned_cols=363 Identities=28% Similarity=0.400 Sum_probs=305.5
Q ss_pred ChHHHHHHHHHHHHhc--CCCeEEcCCCCCCCCChHHHHHHHHHHHHc-----CCCCCCCCCCCHHHHHHHHHHHHHHhC
Q 012095 78 SKTVAITDQATALAQA--GVSVIRLAAGEPDFDTPVLIAEAGINAIRE-----GFTRYTPNAGTLELRSAICHKLKEENG 150 (471)
Q Consensus 78 ~~~~~~~~~~~~~~~~--g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~-----~~~~Y~~~~G~~~lr~~ia~~~~~~~g 150 (471)
+.+.++.........+ ++++++|+.|+|++++|+.+.+++.+++.+ ...+|++..|.++||+++++++.+.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g 94 (409)
T PRK07590 15 YLFPEIARRVNAFREANPEAKIIRLGIGDVTQPLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARG 94 (409)
T ss_pred chHHHHHHHHHHHhhhcCCCceEEecCcCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcC
Confidence 3444555545544443 567999999999999999999999888764 346899999999999999999988899
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCE-----------EEEecCCCCCCCcCCHH
Q 012095 151 LSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT-----------PVILPTRISENFLLDPK 219 (471)
Q Consensus 151 ~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~-----------~~~v~~~~~~~~~ld~e 219 (471)
+++++++|++|+|+++++..+. .+++|||+|++++|+|+.|...++..|.+ ++.++++.+++|.+|.+
T Consensus 95 ~~~~~~~I~it~Ga~~al~~l~-~~~~~gd~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~ 173 (409)
T PRK07590 95 CDISADEIFISDGAKCDTGNIL-DIFGPDNTIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELP 173 (409)
T ss_pred CcCChhhEEECCCHHHHHHHHH-HhcCCCCEEEEeCCCCcchHHHHHHcCCcccccccccccceeEeecccccCCcccCc
Confidence 9999999999999999999764 56789999999999999999999999997 89999876666666643
Q ss_pred HHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEec
Q 012095 220 VLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 299 (471)
Q Consensus 220 ~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S 299 (471)
. +++|+|++||||||||.++|.+++++|+++|++| +++||+||+|.++.+++....++..++...+++|+++|
T Consensus 174 ~------~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~-~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~S 246 (409)
T PRK07590 174 E------EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKEN-GSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRS 246 (409)
T ss_pred c------cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHc-CeEEEEEccchhhccCCCCCcchhhCCCcccceEEEec
Confidence 2 5789999999999999999999999999999999 99999999999998876444455556554568999999
Q ss_pred CCcccCccchhheeeEcCHHHHHHH------------HHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Q 012095 300 FSKAFAMTGWRLGYIAGPKHFVAAC------------NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367 (471)
Q Consensus 300 ~SK~~g~~G~R~G~v~~~~~~i~~l------------~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~ 367 (471)
|||.||++|+|+||+++++++++.+ .........+++.+.|.++..++... ...|++++++.|+++
T Consensus 247 fSK~~~~pGlRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~ 324 (409)
T PRK07590 247 FSKTAGFTGTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPE--GKAQIKELIDYYMEN 324 (409)
T ss_pred CccccCCcCceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCC--cHHHHHHHHHHHHHH
Confidence 9999999999999999999998732 12222222357899999998988742 357899999999999
Q ss_pred HHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEee
Q 012095 368 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYA 445 (471)
Q Consensus 368 r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~ 445 (471)
++.+.+.|++. |+.+..|.+++|+|+++++.. ++.++++.|++++||.+.||+.|+. .+++||+++
T Consensus 325 r~~l~~~L~~~-~~~~~~~~g~~f~wi~~~~~~-----------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~ 392 (409)
T PRK07590 325 AKIIREGLESA-GFEVYGGVNAPYIWVKTPDGM-----------SSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAF 392 (409)
T ss_pred HHHHHHHHHhc-CCceecCCcceEEEEECCCCC-----------CHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEcc
Confidence 99999999998 888888899999999998642 5678999888888999999999975 369999987
Q ss_pred cCHHHHHHHHHHHHHHH
Q 012095 446 ASLTTLQAAVERIKKGL 462 (471)
Q Consensus 446 ~~~e~i~~~~~~l~~~l 462 (471)
.+++++++++++|.+++
T Consensus 393 ~~~~~l~~~l~rl~~~~ 409 (409)
T PRK07590 393 GSRENVLEAMERIKKAL 409 (409)
T ss_pred CCHHHHHHHHHHHHhhC
Confidence 78999999999998753
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-55 Score=441.68 Aligned_cols=376 Identities=38% Similarity=0.652 Sum_probs=328.4
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~ 147 (471)
+++++..+.++.+.+....+ ...+++|+|+.|.|++++++.+.+++.+++......|++..|.++||+++++++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~----~~~~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~ 80 (387)
T PRK07683 5 INPRVKDIQISGIRQFSNMV----QNYDNLISLTIGQPDFPTPSHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKD 80 (387)
T ss_pred hhHHHHhCCccHHHHHHHHH----HhcCCeEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 35677777777665554433 23457899999999988888999999998877677899899999999999999998
Q ss_pred HhCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc
Q 012095 148 ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 226 (471)
Q Consensus 148 ~~g~~~~~~-~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~ 226 (471)
.+|++++++ +|++|+|+++++..++.+++++||+|++++|+|..|...++..|++++.++.+. ++|.+|++.+++.++
T Consensus 81 ~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~ 159 (387)
T PRK07683 81 KYDLHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPIIRLCGAKPVFIDTRS-TGFRLTAEALENAIT 159 (387)
T ss_pred HhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCccchHHHHHHcCCEEEEeecCc-ccCCCCHHHHHHhcC
Confidence 889888998 999999999999999999999999999999999999999999999999999864 568889999999998
Q ss_pred cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCc
Q 012095 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (471)
Q Consensus 227 ~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~ 306 (471)
+++++|++++||||||.+++.+++++|+++|+++ +++||+||+|.++.+++. ..++.++.+..+++++++||||.||+
T Consensus 160 ~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~-~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~vi~~~s~SK~~~~ 237 (387)
T PRK07683 160 EKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDK-NIFVLSDEIYSELVYEQP-HTSIAHFPEMREKTIVINGLSKSHSM 237 (387)
T ss_pred cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHc-CeEEEEecccccceeCCC-cCChhhccCCcCCeEEEeeccccccC
Confidence 8899999999999999999999999999999999 999999999999988653 33555554345789999999999999
Q ss_pred cchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC
Q 012095 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (471)
Q Consensus 307 ~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p 386 (471)
+|+|+||+++++++++++.+.......+++.+.|.++..+|.+ ...++++.++.++++++.+.+.|.+. |+.+.+|
T Consensus 238 pGlRiG~i~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~ 313 (387)
T PRK07683 238 TGWRIGFLFAPSYLAKHILKVHQYNVTCASSISQYAALEALTA---GKDDAKMMRHQYKKRRDYVYNRLISM-GLDVEKP 313 (387)
T ss_pred ccceeEEEEcCHHHHHHHHHHHHhccCCCChHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHHc-CCcccCC
Confidence 9999999999999999998876555566788999999999986 35678899999999999999999987 8888899
Q ss_pred CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012095 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 387 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~l~~ 464 (471)
+||||+|+.++... .++.+++..|++++||.+.||+.|+. ++++||+++.+++++++++++|.+++++
T Consensus 314 ~~~~~~~~~~~~~~----------~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~~~~~~~~~al~~l~~~l~~ 383 (387)
T PRK07683 314 TGAFYLFPSIGHFT----------MSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAYSIETLKEGLDRLEAFLQQ 383 (387)
T ss_pred CeeEEEEEecccCC----------CCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 99999999987420 15678888888888999999999875 4799999999999999999999998864
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-55 Score=443.31 Aligned_cols=381 Identities=32% Similarity=0.529 Sum_probs=322.9
Q ss_pred cccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCC---CCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHH
Q 012095 69 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP---DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKL 145 (471)
Q Consensus 69 s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~---~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~ 145 (471)
+.++.... +.+.++.....+.+..|+++|+|+.|.| ++++|+.+.+++.+++......|++..|..+||+++++++
T Consensus 5 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~ 83 (398)
T PRK08363 5 SERAMGVE-YAIRDVVLPARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKRE 83 (398)
T ss_pred hHHHHhcc-HHHHHHHHHHHHHHhcCCCeEEEeCCCCCcCCCCCCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHH
Confidence 33444443 3345555555555667889999999999 6888899999999888766667988999999999999999
Q ss_pred HHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhh
Q 012095 146 KEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL 225 (471)
Q Consensus 146 ~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l 225 (471)
+..+|+.+++++|++|+|+++++..++.+++++||+|++++|+|..|...++..|++++.++...+++|.+|++.+++.+
T Consensus 84 ~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~ 163 (398)
T PRK08363 84 KRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKI 163 (398)
T ss_pred HHhcCCCCChhhEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeccccccCCcCCHHHHHhhC
Confidence 99899889999999999999999999999999999999999999999999999999998884333456889999999999
Q ss_pred ccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccC
Q 012095 226 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305 (471)
Q Consensus 226 ~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 305 (471)
+++++++++++||||||.+++.+++++|+++|+++ +++||+||+|.++.|++. ..++..++. ..++++++||||.|+
T Consensus 164 ~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~-~~~li~Deay~~~~~~~~-~~~~~~~~~-~~~vi~~~SfSK~~~ 240 (398)
T PRK08363 164 TEKTKAIAVINPNNPTGALYEKKTLKEILDIAGEH-DLPVISDEIYDLMTYEGK-HVSPGSLTK-DVPVIVMNGLSKVYF 240 (398)
T ss_pred CcceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHc-CeEEEEhhhhhhhccCCc-ccCHHHcCc-CCcEEEEecchhccC
Confidence 88899999999999999999999999999999999 999999999999888653 334445543 468999999999999
Q ss_pred ccchhheeeEc--CHHHHHHHHHHHhc---ccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 012095 306 MTGWRLGYIAG--PKHFVAACNKIQSQ---FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 380 (471)
Q Consensus 306 ~~G~R~G~v~~--~~~~i~~l~~~~~~---~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g 380 (471)
++|+|+||+++ ++++++.+...... ...+++.+.|.++..+|.. ..+|+++.++.++++++++.+.|.+++|
T Consensus 241 ~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~---~~~~l~~~~~~~~~~~~~l~~~L~~~~~ 317 (398)
T PRK08363 241 ATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTG---PMDYLEEYMKKLKERRDYIYKRLNEIPG 317 (398)
T ss_pred CccceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999997 77777776544321 2357899999999999975 4789999999999999999999998888
Q ss_pred CeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHH
Q 012095 381 VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERI 458 (471)
Q Consensus 381 ~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l 458 (471)
+.+..|+||||+|++++... ..++.+++..+++++||.+.||+.|+. ++|+|++++.+++++++++++|
T Consensus 318 ~~~~~p~g~~~~~~~l~~~~---------~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l 388 (398)
T PRK08363 318 ISTTKPQGAFYIFPRIEEGP---------WKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLPPVEILEEAMDRF 388 (398)
T ss_pred CEecCCCeEEEEEEEeccCC---------CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHH
Confidence 88889999999999987520 014567777777778999999999975 4799999988889999999999
Q ss_pred HHHHHhh
Q 012095 459 KKGLLTL 465 (471)
Q Consensus 459 ~~~l~~~ 465 (471)
++++++.
T Consensus 389 ~~~~~~~ 395 (398)
T PRK08363 389 EEFMRER 395 (398)
T ss_pred HHHHHHh
Confidence 9998764
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-55 Score=441.02 Aligned_cols=379 Identities=34% Similarity=0.591 Sum_probs=324.6
Q ss_pred cccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHH
Q 012095 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLK 146 (471)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~ 146 (471)
.+++++.......+.++.+.. ...+++|+|+.|+|++.+|+.+.+++.+++......|++..|.++||++++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~ 81 (391)
T PRK07309 6 RFNKQLDKIEVSLIRQFDQSI----SDIPGILKLTLGEPDFTTPDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVK 81 (391)
T ss_pred HHHhhhhhcCccHHHHHHHHH----HhcCCeEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHH
Confidence 345666666655554544322 2235699999999999989999999998887656679999999999999999999
Q ss_pred HHhCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhh
Q 012095 147 EENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL 225 (471)
Q Consensus 147 ~~~g~~~~~-~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l 225 (471)
..+|+++++ ++|++|+|+++++..++++++++||+|++++|+|..|...++..|++++.++.+. ++|.+|++.+++++
T Consensus 82 ~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~~ 160 (391)
T PRK07309 82 EKYNLDYAPENEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTTE-NDFVLTPEMLEKAI 160 (391)
T ss_pred HHhCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEEecCC-cCCcCCHHHHHHHh
Confidence 989987775 7999999999999999999999999999999999999999999999999999863 46789999999988
Q ss_pred cc---CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCc
Q 012095 226 TE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK 302 (471)
Q Consensus 226 ~~---~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 302 (471)
++ ++++|++++||||||.+++.+++++|+++|++| +++||+||+|.++.+++....++..+. .+++++++||||
T Consensus 161 ~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~-~~~ii~D~~y~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK 237 (391)
T PRK07309 161 LEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKY-DIFVISDEVYSELTYTGEPHVSIAEYL--PDQTILINGLSK 237 (391)
T ss_pred hccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHc-CcEEEEEccccceeeCCCCCCCHHHhc--cCCEEEEecChh
Confidence 63 688999999999999999999999999999999 999999999999998654444544443 378999999999
Q ss_pred ccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCe
Q 012095 303 AFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 382 (471)
Q Consensus 303 ~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~ 382 (471)
.||++|+|+||+++++++++.+.........+++.+.|.++..+|.+ ...+....++.|+++++++.+.|++. |+.
T Consensus 238 ~~g~~GlRvG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 313 (391)
T PRK07309 238 SHAMTGWRIGLIFAPAEFTAQLIKSHQYLVTAATTMAQFAAVEALTN---GKDDALPMKKEYIKRRDYIIEKMTDL-GFK 313 (391)
T ss_pred hccCccceeEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhC---ChhHHHHHHHHHHHHHHHHHHHHHHC-CCe
Confidence 99999999999999999999998876555567899999999999986 24455678889999999999999988 899
Q ss_pred eeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHH
Q 012095 383 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKK 460 (471)
Q Consensus 383 ~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~ 460 (471)
+..|+||||+|+++|.... .++.+++++|++++||.+.||..|+. +++|||+++.+.+++++++++|++
T Consensus 314 ~~~p~gg~~~~~~l~~~~~---------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~i~~l~~ 384 (391)
T PRK07309 314 IIKPDGAFYIFAKIPAGYN---------QDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAASMETIKEAMKRLKE 384 (391)
T ss_pred ecCCCeeEEEEEECCCCCC---------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHH
Confidence 9999999999999885321 15678898888778999999999976 579999999988999999999999
Q ss_pred HHHhhC
Q 012095 461 GLLTLR 466 (471)
Q Consensus 461 ~l~~~~ 466 (471)
++++++
T Consensus 385 ~~~~~~ 390 (391)
T PRK07309 385 YMEEHA 390 (391)
T ss_pred HHHhhc
Confidence 998764
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-55 Score=439.76 Aligned_cols=379 Identities=31% Similarity=0.558 Sum_probs=325.9
Q ss_pred cccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHH
Q 012095 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKL 145 (471)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~ 145 (471)
.+++++..+.+..+..+.+.. ....++++|+.|+|++++|+.+.+++.+.+... ...|++..|.+++|+++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l 78 (389)
T PRK05957 3 QFTSRMDAVQSPIIPVVGQLI----RENPGTISLGQGVVSYPPPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKL 78 (389)
T ss_pred hhhHHHHhcCCcHHHHHHHHH----HhCCCeEEccCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 356666666655443332222 233568999999999999999999998877543 357999999999999999999
Q ss_pred HHHhCCCCC-CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhh
Q 012095 146 KEENGLSYT-PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESK 224 (471)
Q Consensus 146 ~~~~g~~~~-~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~ 224 (471)
++.+|.+++ +++|++|+|+++++..++..++++||+|++++|+|..+...++..|++++.++.+ ++|.+|+++++++
T Consensus 79 ~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~ 156 (389)
T PRK05957 79 QQDNGIELNNEQAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNHEMAITMAGCQPILVPTD--DNYQLQPEAIEQA 156 (389)
T ss_pred HHHhCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeecC--CCCCcCHHHHHHh
Confidence 998898777 6899999999999999999999999999999999999999899999999999975 4578999999999
Q ss_pred hccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCccc
Q 012095 225 LTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 304 (471)
Q Consensus 225 l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 304 (471)
+++++|+|++++||||||.++|.+++++|+++|++| |++||+||+|.++.|++....+...+.....++|+++||||.|
T Consensus 157 i~~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 235 (389)
T PRK05957 157 ITPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEH-GIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAY 235 (389)
T ss_pred cCcCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHc-CcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhc
Confidence 988999999999999999999999999999999999 9999999999999886543334444434457899999999999
Q ss_pred CccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCC-ee
Q 012095 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV-KM 383 (471)
Q Consensus 305 g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~-~~ 383 (471)
|++|+|+||+++++++++++.........+++.+.|.++..+|.. ...++++.++.++++|+.+.+.|++++|+ .+
T Consensus 236 g~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~ 312 (389)
T PRK05957 236 GFASWRIGYMVIPIHLLEAIKKIQDTILICPPVVSQYAALGALQV---GKSYCQQHLPEIAQVRQILLKSLGQLQDRCTL 312 (389)
T ss_pred cCccceeEEEecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 999999999999999999999988777778899999999999976 35778888888999999999999988774 77
Q ss_pred eCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeec-CHHHHHHHHHHHHH
Q 012095 384 SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAA-SLTTLQAAVERIKK 460 (471)
Q Consensus 384 ~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~-~~e~i~~~~~~l~~ 460 (471)
.+|+||||+|++++.. .++.+++++|++++||.+.||+.|+. ++|+||+++. +++++++++++|.+
T Consensus 313 ~~~~gg~~~~~~~~~~-----------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~l~~~~~~l~~ 381 (389)
T PRK05957 313 HPANGAFYCFLKVNTD-----------LNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERLVQ 381 (389)
T ss_pred cCCCeeEEEEEeCCCC-----------CChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHH
Confidence 8899999999999753 26789999998777999999999975 4699999987 88999999999999
Q ss_pred HHHhhC
Q 012095 461 GLLTLR 466 (471)
Q Consensus 461 ~l~~~~ 466 (471)
.++++.
T Consensus 382 ~~~~~~ 387 (389)
T PRK05957 382 GLKTIV 387 (389)
T ss_pred HHHhhh
Confidence 988753
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-55 Score=439.10 Aligned_cols=358 Identities=23% Similarity=0.358 Sum_probs=307.2
Q ss_pred CCChHHHHHHHHHHHHhc-CCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q 012095 76 KPSKTVAITDQATALAQA-GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYT 154 (471)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~-g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~ 154 (471)
.++++.++.+.+..+... |.++|+|+.|+|++++|+.+.+++.+... ....|++..|..+||+++++++++++|++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~a~~~~~~-~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~ 82 (374)
T PRK05839 4 EPYPFEKLRELLKEITPNKEYKGLDLTIGEPQFETPKFIQDALKNNAH-LLNKYPKSAGEESLREAQRGFFKRRFKIELK 82 (374)
T ss_pred CcchHHHHHHHHHHhhhcCCCCeEEcCCCCCCCCCCHHHHHHHHHHhh-ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCC
Confidence 455666777777777777 77999999999999999889998887653 3678988999999999999999999998899
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEE
Q 012095 155 PDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLL 232 (471)
Q Consensus 155 ~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i 232 (471)
+++|++|+|+++++..++.+++ .+||.|+++.|+|+.|...++..|++++.++++.+++|.+|++..+ + +++|+|
T Consensus 83 ~~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~~--~-~~~k~v 159 (374)
T PRK05839 83 ENELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLLMPLTKENDFTPSLNEKE--L-QEVDLV 159 (374)
T ss_pred cceEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEEeecccccCCcCCcchhh--h-ccccEE
Confidence 9999999999999998888775 4789999999999999999999999999999987777888876543 2 468999
Q ss_pred EEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccC-----CCCCCceEEEecCCcccCcc
Q 012095 233 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-----PGMWERTLTVNGFSKAFAMT 307 (471)
Q Consensus 233 ~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~-----~~~~~~~i~~~S~SK~~g~~ 307 (471)
+++|||||||.+++.+++++|+++|++| |++||+||+|.++.+++ ..+++... ....+++|+++||||.|+++
T Consensus 160 ~i~nP~NPTG~~~s~~~l~~i~~~~~~~-~~~ii~DE~Y~~~~~~~-~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~ 237 (374)
T PRK05839 160 ILNSPNNPTGRTLSLEELIEWVKLALKH-DFILINDECYSEIYENT-PPPSLLEASILVGNESFKNVLVINSISKRSSAP 237 (374)
T ss_pred EEeCCCCCcCcccCHHHHHHHHHHHHHc-CCEEEeccchhhcccCC-CCCCHhhhhcccCccccCcEEEEeccccccCCc
Confidence 9999999999999999999999999999 99999999999986543 23333321 12347999999999999999
Q ss_pred chhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC
Q 012095 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (471)
Q Consensus 308 G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~ 387 (471)
|+|+||+++++++++++.+.......+.+.+.|.++..++.. ++++++.++.++++++.+.+.| |+. .|.
T Consensus 238 GlRiG~ii~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~l----~~~--~p~ 307 (374)
T PRK05839 238 GLRSGFIAGDASILKKYKAYRTYLGCASPLPLQKAAAVAWLD----DEHAEFFRNIYAKNLKLAREIL----GIT--IPP 307 (374)
T ss_pred cceeEEEecCHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHhc----CCC--CCC
Confidence 999999999999999998887666677899999999888864 6789999999999999988766 333 689
Q ss_pred cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC----CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012095 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD----DTCIRISYAASLTTLQAAVERIKKGLL 463 (471)
Q Consensus 388 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~----~~~iRis~~~~~e~i~~~~~~l~~~l~ 463 (471)
+|+|+|++++ +..+++++|++++||.+.||..|+. ++|+||+++.+++++++++++|+++++
T Consensus 308 gg~fi~~~~~--------------~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 308 ATFYVWLPVD--------------NDEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVYDTPKLEKALEIIKTYLE 373 (374)
T ss_pred eeEEEEEeCC--------------ChHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecCCHHHHHHHHHHHHHHhh
Confidence 9999999986 3568999988767999999998874 489999999889999999999999874
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-55 Score=439.51 Aligned_cols=378 Identities=25% Similarity=0.410 Sum_probs=331.0
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLK 146 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~ 146 (471)
+++++..+.++.+..+.+.+.+....+++.|+|+.|+|++.+++.+.+++.+.+.. ....|++..|.++||+++++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~ 81 (386)
T PRK07550 2 LNPLIAALFPPPIPEVRAWLAGYDGADGPLIDLSQAVPGYPPPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYS 81 (386)
T ss_pred cchhhhhcCChHHHHHHHHHHHHhhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHH
Confidence 35566667777788888877777677889999999999988888999998887654 34679889999999999999999
Q ss_pred HHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc
Q 012095 147 EENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 226 (471)
Q Consensus 147 ~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~ 226 (471)
+.+|..+++++|++|+|+++++..++.+++++||+|++++|+|..+...++..|++++.+++++++++.+|+++++++++
T Consensus 82 ~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~ 161 (386)
T PRK07550 82 RLYGAAISPEQVHITSGCNQAFWAAMVTLAGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALIT 161 (386)
T ss_pred HHhCCCCCcceEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhc
Confidence 99998889999999999999999999999999999999999999999999999999999999866778899999999998
Q ss_pred cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCc
Q 012095 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (471)
Q Consensus 227 ~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~ 306 (471)
+++++|++++||||||.++|.+++++|+++|++| +++||+||+|.++.+++....++.......+++++++||||.+|+
T Consensus 162 ~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~-~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~ 240 (386)
T PRK07550 162 PRTRAIALVTPNNPTGVVYPPELLHELYDLARRH-GIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYAL 240 (386)
T ss_pred ccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHc-CeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccC
Confidence 8999999999999999999999999999999999 999999999999876533222333322235689999999999999
Q ss_pred cchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC
Q 012095 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (471)
Q Consensus 307 ~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p 386 (471)
+|+|+||+++++++++.+.+.......+++.++|.++..+|.. .++|+++.++.++++++.+.+.|.+++++.+ .+
T Consensus 241 ~G~RiG~i~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~ 316 (386)
T PRK07550 241 TGHRVGAVVASPARIAEIEKFMDTVAICAPRIGQIAVAWGLPN---LADWRAGNRAEIARRRDAFRAVFARLPGWEL-LA 316 (386)
T ss_pred cccceEeeecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHHhCCCcee-CC
Confidence 9999999999999999999888777788999999999999975 4788999999999999999999998767755 46
Q ss_pred CcceEEeEecCC-ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeec-CHHHHHHHHHHHHHH
Q 012095 387 QGAFYLFIDFST-YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAA-SLTTLQAAVERIKKG 461 (471)
Q Consensus 387 ~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~-~~e~i~~~~~~l~~~ 461 (471)
.+++|+|++++. . .++.+++++|++++||.+.||..|+. ++++||+++. +++++++++++|.++
T Consensus 317 ~g~~~~~~~~~~~~-----------~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 317 SGAYFAYVRHPFPD-----------RPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELVERLRAF 384 (386)
T ss_pred CceEEEEecCCCCC-----------CCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecCCHHHHHHHHHHHHhh
Confidence 789999999875 2 26889999988878999999999974 4799999997 889999999999875
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-55 Score=443.51 Aligned_cols=374 Identities=23% Similarity=0.385 Sum_probs=317.5
Q ss_pred HHHHHHHHHHHHhcCCCeEEcCCCCCC----CCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q 012095 80 TVAITDQATALAQAGVSVIRLAAGEPD----FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYT 154 (471)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~i~l~~g~~~----~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~ 154 (471)
+..+..........|+++|+|+.|+|+ +++++.+.+++.+++... ..+|+|..|..+||+++++++.+ .+..++
T Consensus 16 ~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~-~~~~~~ 94 (401)
T TIGR01264 16 IRAIVDNMKVKPNPEKPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHN-PDGPIE 94 (401)
T ss_pred HHHHHHHHHhhhhcCCCeeecCCCCCCCcCCCCCCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhh-cCCCCC
Confidence 344444444444557789999999985 777889999998887654 35799999999999999999986 455688
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEE
Q 012095 155 PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLIL 234 (471)
Q Consensus 155 ~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i 234 (471)
+++|++|+|+++++..++.+++++||+|++++|+|..|...++..|++++.++++.++++++|++.+++.++++++++++
T Consensus 95 ~~~i~~t~G~~~al~~~~~~l~~~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~ 174 (401)
T TIGR01264 95 ADDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDEKTAALIV 174 (401)
T ss_pred HHHEEECcChHHHHHHHHHHhCCCCCEEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhccCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999876667899999999998888999999
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheee
Q 012095 235 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYI 314 (471)
Q Consensus 235 ~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v 314 (471)
++||||||.+++.+++++|+++|+++ +++||+||+|.++.|++....++..+.. ..++|+++||||.|+++|+|+||+
T Consensus 175 ~~p~NPtG~~~~~~~~~~l~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~vi~~~SfSK~~~~~GlRiG~i 252 (401)
T TIGR01264 175 NNPSNPCGSVFSRQHLEEILAVAERQ-CLPIIADEIYGDMVFSGATFEPLASLSS-TVPILSCGGLAKRWLVPGWRLGWI 252 (401)
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEhhhhhhccCCcccccHHHcCC-CCcEEEEccCcccCCCccceEEEE
Confidence 99999999999999999999999999 9999999999999987654455555543 346999999999999999999999
Q ss_pred EcCH------HHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCc
Q 012095 315 AGPK------HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG 388 (471)
Q Consensus 315 ~~~~------~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~ 388 (471)
++++ ++++.+.+... ...+++++.|.++..+|.+. .++++++.++.++++|+.+.+.|++++|+.+..|++
T Consensus 253 v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~--~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~ 329 (401)
T TIGR01264 253 IIHDRRGILRDIRDGLVKLSQ-RILGPCTIVQGALPSILLRT--PQEYFDGTLSVLESNAMLCYGALAAVPGLRPVMPSG 329 (401)
T ss_pred EecCcchhHHHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCe
Confidence 9874 35555555433 24567899999999999752 368999999999999999999999987888888999
Q ss_pred ceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhh
Q 012095 389 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 389 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~~~ 465 (471)
|+|+|++++... . . ...++.++++.|++++||.+.||+.|+.++++|++++.+++++++++++|.++++++
T Consensus 330 g~f~~~~~~~~~-~--~---~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~~~~~~~l~~~l~rl~~~~~~~ 400 (401)
T TIGR01264 330 AMYMMVGIEMEH-F--P---EFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVLTVPVVMMEEACSRIQEFCERH 400 (401)
T ss_pred eeEEEEEecccc-c--C---CCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence 999999986410 0 0 012567899998877799999999998889999999998899999999999998753
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-54 Score=436.98 Aligned_cols=380 Identities=31% Similarity=0.540 Sum_probs=327.5
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~ 147 (471)
+++++....++.+.++...+......|.++|+|+.|.|++++|+.+.+++.+... ...+|++..|..++|+++++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~-~~~~Y~~~~g~~~lr~~ia~~~~- 80 (397)
T PRK07568 3 ISKRVLNMPASPIRKLVPYADEAKKRGIKVYHLNIGQPDIKTPEVFFEAIKNYDE-EVLAYSHSQGIPELREAFAKYYK- 80 (397)
T ss_pred hhhHhhhCCcchHHHHHHHHHHHHhhCCCEEEecCCCCCCCCCHHHHHHHHHHhc-CCcCcCCCCCCHHHHHHHHHHHH-
Confidence 4566666666777666655544444567899999999999889999998877643 46789999999999999999998
Q ss_pred HhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcC-CHHHHHhhhc
Q 012095 148 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL-DPKVLESKLT 226 (471)
Q Consensus 148 ~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~l-d~e~l~~~l~ 226 (471)
.+|..+++++|++|+|+++++..++..++++||+|++++|+|..|...++..|++++.++++.++++.+ +++.++++++
T Consensus 81 ~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~ 160 (397)
T PRK07568 81 KWGIDVEPDEILITNGGSEAILFAMMAICDPGDEILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLIT 160 (397)
T ss_pred HhCCCCCcceEEEcCChHHHHHHHHHHhcCCCCEEEEecCCCccHHHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcC
Confidence 578888999999999999999999999999999999999999999999999999999999875556654 6899999998
Q ss_pred cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCc
Q 012095 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (471)
Q Consensus 227 ~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~ 306 (471)
+++++|++++||||||.+++.+++++|+++|+++ +++||+||+|.++.|++....++..+....+++++++||||.||+
T Consensus 161 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~-~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~ 239 (397)
T PRK07568 161 PKTKAILISNPGNPTGVVYTKEELEMLAEIAKKH-DLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSA 239 (397)
T ss_pred ccceEEEEECCCCCCCccCCHHHHHHHHHHHHHC-CcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccC
Confidence 8999999999999999999999999999999999 999999999999988765455666665446899999999999999
Q ss_pred cchhheeeEcC-HHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC
Q 012095 307 TGWRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385 (471)
Q Consensus 307 ~G~R~G~v~~~-~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~ 385 (471)
+|+|+||++++ +++++.+.+.... ..+++.+.|.++..+|.. .+.+++++++.|+++++.+.+.|++++|+.+..
T Consensus 240 ~G~R~G~~~~~~~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 315 (397)
T PRK07568 240 CGARIGCLISKNKELIAAAMKLCQA-RLSPPTLEQIGAAALLDT---PESYFDEVREEYKKRRDILYEELNKIPGVVCEK 315 (397)
T ss_pred CCcceEEEecCCHHHHHHHHHHhhc-cCCCCcHHHHHHHHHhhC---CHHHHHHHHHHHHHHHHHHHHHHhcCCCceecC
Confidence 99999999985 7888887765443 457899999999999975 468899999999999999999999987888889
Q ss_pred CCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHc-----CCEEEECCCCCCC-----CCcEEEEeecCHHHHHHHH
Q 012095 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK-----AQVALVPGDAFGD-----DTCIRISYAASLTTLQAAV 455 (471)
Q Consensus 386 p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~-----~gV~v~pg~~f~~-----~~~iRis~~~~~e~i~~~~ 455 (471)
|+||||+|++++.. ++.+++++|+++ .||.+.||..|+. ++++||+++.+++++++++
T Consensus 316 p~g~~~~~~~l~~~------------~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~~~~~~~~~~~ 383 (397)
T PRK07568 316 PKGAFYIIAKLPVD------------DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVLNEEDLKRAM 383 (397)
T ss_pred CCcceEEEEecCCC------------CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEeCCHHHHHHHH
Confidence 99999999999742 577899988864 5999999998842 3699999998889999999
Q ss_pred HHHHHHHHhhC
Q 012095 456 ERIKKGLLTLR 466 (471)
Q Consensus 456 ~~l~~~l~~~~ 466 (471)
++|.++++++.
T Consensus 384 ~~l~~~l~~~~ 394 (397)
T PRK07568 384 EILKEALEKYN 394 (397)
T ss_pred HHHHHHHHHhh
Confidence 99999998754
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-55 Score=452.02 Aligned_cols=367 Identities=20% Similarity=0.320 Sum_probs=301.0
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHc--C--CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHH
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIRE--G--FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQ 170 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~~--~--~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~ 170 (471)
+++|+|+.+.+.|+. .+++.+.+.+.+ + ..+|++..|.++||++|++++.+++|.++++++|++|+|+++++..
T Consensus 129 p~~i~~~~~~~~fp~--~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~ 206 (534)
T PLN02231 129 PSLLDKSETHGLFSA--DAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHM 206 (534)
T ss_pred CccCCCCCccccCCH--HHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHH
Confidence 468888877777754 444445555543 2 4679999999999999999999989999999999999999999999
Q ss_pred HHHHhcC-CCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc------CCcEEEEcCCCCCccc
Q 012095 171 AVLAVCS-PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGS 243 (471)
Q Consensus 171 ~~~~l~~-~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~------~~~~i~i~~p~NPtG~ 243 (471)
++++++. +||.|+++.|+|+.|...++..|++++.++++++++|.+|+++|++++++ ++|+|+++|||||||.
T Consensus 207 ~~~~l~~~~gd~Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~ 286 (534)
T PLN02231 207 MMQLLIRSEKDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQ 286 (534)
T ss_pred HHHHhccCCCCEEEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCc
Confidence 9999984 89999999999999999999999999999998777899999999998864 6899999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccC-CCCccccccCCC------CCCceEEEecCCccc-CccchhheeeE
Q 012095 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA-PATHTSFASLPG------MWERTLTVNGFSKAF-AMTGWRLGYIA 315 (471)
Q Consensus 244 ~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~-~~~~~~~~~~~~------~~~~~i~~~S~SK~~-g~~G~R~G~v~ 315 (471)
++|.+++++|+++|++| +++||+||+|.++.|+ +....++..+.. ...++|+++||||.+ |++|||+||++
T Consensus 287 vls~e~l~~Iv~~a~~~-~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~ 365 (534)
T PLN02231 287 VLAEENQRDIVEFCKQE-GLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYME 365 (534)
T ss_pred CCCHHHHHHHHHHHHHc-CCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEE
Confidence 99999999999999999 9999999999999995 334445544321 123699999999976 89999999998
Q ss_pred c---CHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccC----CChH---HHHHHHHHHHHHHHHHHHHhcCCCCCeeeC
Q 012095 316 G---PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGY----AGGE---VVSKMVKAFRERRDFLVKSFGELEGVKMSE 385 (471)
Q Consensus 316 ~---~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~----~~~~---~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~ 385 (471)
+ ++++++.+.+... ...|++.+.|.++..+++.+. .... +...+++.|+++++++.+.|++++|+.+.+
T Consensus 366 ~~~~~~~l~~~l~k~~~-~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~~~~ 444 (534)
T PLN02231 366 VTGFTSDVREQIYKVAS-VNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTCNK 444 (534)
T ss_pred EecCCHHHHHHHHHHHh-hhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecC
Confidence 6 7899999988765 466788999999988886421 1123 345678899999999999999998999999
Q ss_pred CCcceEEeEec--CCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeecCHHHHHHHHHHHHH
Q 012095 386 PQGAFYLFIDF--STYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAASLTTLQAAVERIKK 460 (471)
Q Consensus 386 p~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~---~~~iRis~~~~~e~i~~~~~~l~~ 460 (471)
|+||||+|+++ |.. ...........++..++.+|++++||.++||+.|+. ..+||+++..++++++++++||.+
T Consensus 445 p~Ggfylw~~l~lp~~-~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~~~~~e~l~eal~RL~~ 523 (534)
T PLN02231 445 AEGAMYLFPRIHLPQK-AIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAIVSRLTE 523 (534)
T ss_pred CCeeeEEeccccCcHH-HHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEEeCCCHHHHHHHHHHHHH
Confidence 99999999665 321 000000000113455778899888999999999985 246999998899999999999999
Q ss_pred HHHhhC
Q 012095 461 GLLTLR 466 (471)
Q Consensus 461 ~l~~~~ 466 (471)
+++++.
T Consensus 524 ~~~~~~ 529 (534)
T PLN02231 524 FHKSFM 529 (534)
T ss_pred HHHHHH
Confidence 988764
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-54 Score=436.11 Aligned_cols=374 Identities=33% Similarity=0.564 Sum_probs=324.4
Q ss_pred cccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhC
Q 012095 71 RVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENG 150 (471)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g 150 (471)
++..++++.+.++...+. ..++|+|+.|.|+.+.|+.+.+++.+.+.....+|++..|.++||+++++++.+.+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~-----~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g 79 (387)
T PRK07777 5 RLRPFGTTIFAEMSALAV-----RTGAVNLGQGFPDEDGPPEMLEAAQEAIAGGVNQYPPGPGIPELRAAIAAQRRRRYG 79 (387)
T ss_pred hhhhcCccHHHHHHHHHh-----hCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 455566665655554442 246899999999988888888888888776667898899999999999999999899
Q ss_pred CCCCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCC-CCCcCCHHHHHhhhccC
Q 012095 151 LSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS-ENFLLDPKVLESKLTEK 228 (471)
Q Consensus 151 ~~~~~~-~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~ld~e~l~~~l~~~ 228 (471)
.+++++ +|++|+|+++++..++.+++++||.|+++.|+|..|...++..|++++.++++++ ++|.+|++++++.++++
T Consensus 80 ~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 159 (387)
T PRK07777 80 LEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTPR 159 (387)
T ss_pred CCCCCCCcEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcCcc
Confidence 888786 7999999999999999999999999999999999999999999999999999765 46889999999999888
Q ss_pred CcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccc
Q 012095 229 SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 308 (471)
Q Consensus 229 ~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 308 (471)
+++|++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++..+.++..+++..+++++++||||.||++|
T Consensus 160 ~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 238 (387)
T PRK07777 160 TRALIVNSPHNPTGTVLTAAELAAIAELAVEH-DLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTG 238 (387)
T ss_pred cEEEEEcCCCCCCCccCCHHHHHHHHHHHHhc-CcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcC
Confidence 99999999999999999999999999999999 99999999999998866544455555544678999999999999999
Q ss_pred hhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCc
Q 012095 309 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG 388 (471)
Q Consensus 309 ~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~ 388 (471)
+|+||+++++++++.+.........+.+.+.|.++..++.. .+.|++++++.++++++.+.+.|.++ |+++.+|+|
T Consensus 239 lRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~g 314 (387)
T PRK07777 239 WKIGWACGPAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDH---EDAWVAALRDSLQAKRDRLAAGLAEA-GFEVHDSAG 314 (387)
T ss_pred ceeEEEecCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHHHHHHhC-CCCccCCCc
Confidence 99999999999999998877766667888899998888875 46889999999999999999999987 888889999
Q ss_pred ceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-----CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012095 389 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-----DTCIRISYAASLTTLQAAVERIKKGLL 463 (471)
Q Consensus 389 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~-----~~~iRis~~~~~e~i~~~~~~l~~~l~ 463 (471)
+||+|++++.. + ..++.+|+++|++++||.+.||..|+. +++|||+++.+++++++++++|+++..
T Consensus 315 ~~~~~~~~~~~-~--------~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~~~~~l~~~l~~l~~~~~ 385 (387)
T PRK07777 315 TYFLCADPRPL-G--------YDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCKRDDTLDEAIRRLRALRG 385 (387)
T ss_pred ceEEEeccccc-C--------CCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecCCHHHHHHHHHHHHHHhc
Confidence 99999997631 0 026789999998878999999998863 358999999999999999999988653
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-54 Score=434.55 Aligned_cols=374 Identities=26% Similarity=0.417 Sum_probs=321.1
Q ss_pred CCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q 012095 76 KPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYT 154 (471)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~ 154 (471)
.++.+..+...+...++.|+++++|+.|+|+..+|+.+.+++.+.+.. ....|++..|.++||+++++++++.+|+.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~ 89 (395)
T PRK08175 10 PPYVFNITAELKMAARRRGEDIIDFSMGNPDGPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDID 89 (395)
T ss_pred CchHHHHHHHHHHHHHhcCCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCC
Confidence 333333333444555567889999999999988888788888776653 3578999999999999999999998898888
Q ss_pred CC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc---cCCc
Q 012095 155 PD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT---EKSR 230 (471)
Q Consensus 155 ~~-~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~---~~~~ 230 (471)
++ +|++|+|+++++..++..+++|||+|++++|+|+.+...++..|++++.++++.+++ +.++++++++ ++++
T Consensus 90 ~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~---~~~~l~~~l~~~~~~~~ 166 (395)
T PRK08175 90 PESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVD---FFNELERAIRESYPKPK 166 (395)
T ss_pred CCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCeEEEEecccCCC---cHHHHHHHHhhccCCce
Confidence 87 899999999999999999999999999999999999999999999999999976544 4788887775 4789
Q ss_pred EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchh
Q 012095 231 LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWR 310 (471)
Q Consensus 231 ~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R 310 (471)
+|++++||||||.+++.+++++|+++|++| +++||+||+|.++.+++....++..++...+++++++||||.||++|+|
T Consensus 167 ~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~-~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlR 245 (395)
T PRK08175 167 MMILGFPSNPTAQCVELEFFEKVVALAKRY-DVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWR 245 (395)
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHHHHc-CcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchh
Confidence 999999999999999999999999999999 9999999999999887655556655554357889999999999999999
Q ss_pred heeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcce
Q 012095 311 LGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAF 390 (471)
Q Consensus 311 ~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~ 390 (471)
+||+++++++++++.+.......+++++.|.++..+|.. .+.+++++++.|+++++.+.+.|+++ |+.+..|.+|+
T Consensus 246 iG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~p~~g~ 321 (395)
T PRK08175 246 IGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEG---DQQCVRDIAEQYKRRRDVLVKGLHEA-GWMVEMPKASM 321 (395)
T ss_pred heeeeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHc-CCcccCCCEEE
Confidence 999999999999999888767777888899999999975 46889999999999999999999998 88888899999
Q ss_pred EEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHhh
Q 012095 391 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~l~~~ 465 (471)
|+|+++++... ..++.+++++|++++||.+.||..|+. ++++||+++.+++.+++++++|.+++++.
T Consensus 322 ~i~i~l~~~~~--------~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~~~~~~~~~al~~l~~~l~~~ 390 (395)
T PRK08175 322 YVWAKIPEPYA--------AMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMFRAD 390 (395)
T ss_pred EEEEECCcccC--------CCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence 99999986421 014688998888778999999999875 46999999888899999999999999764
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-53 Score=432.48 Aligned_cols=375 Identities=25% Similarity=0.436 Sum_probs=319.9
Q ss_pred hHHHHHHHHHHHHhcCCCeEEcCCCCCC----CCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 012095 79 KTVAITDQATALAQAGVSVIRLAAGEPD----FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSY 153 (471)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~i~l~~g~~~----~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~ 153 (471)
++.++.........+|.++|+|+.|+|+ +++++.+.+++.+.+... ...|++..|..++|++++++++..+|.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~ 94 (403)
T TIGR01265 15 PIRAIVDNLKVKPNPEKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKL 94 (403)
T ss_pred HHHHHHHHHHHHHhcCCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCC
Confidence 4455555555555568899999999985 677889999999887654 35798999999999999999998788888
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEE
Q 012095 154 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLI 233 (471)
Q Consensus 154 ~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~ 233 (471)
++++|++|+|+++++.+++++++++||+|++++|+|..|...++..|++++.++++.++++.+|++.+++++++++++++
T Consensus 95 ~~~~ii~t~G~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~ 174 (403)
T TIGR01265 95 TADDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADEKTVAIV 174 (403)
T ss_pred CHHHEEEecChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhCcCccEEE
Confidence 89999999999999999999999999999999999999999999999999999987666788999999999988899999
Q ss_pred EcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhhee
Q 012095 234 LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 313 (471)
Q Consensus 234 i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~ 313 (471)
+++||||||.+++.+++++|+++|+++ |++||+||+|.++.+++....++..+.. ..++|+++||||.|+++|+|+||
T Consensus 175 i~~p~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~~pGlRiG~ 252 (403)
T TIGR01265 175 VINPSNPCGSVFSRDHLQKIAEVARKL-GIPIIADEIYGHMVFGDAPFIPMASFAS-IVPVLSLGGISKRWVVPGWRLGW 252 (403)
T ss_pred EecCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEccccccccCCCCccchhhhcc-CCcEEEEeecccccCCCcceEEE
Confidence 999999999999999999999999999 9999999999999987654455555543 35799999999999999999999
Q ss_pred eEcC--HH-----HHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC
Q 012095 314 IAGP--KH-----FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (471)
Q Consensus 314 v~~~--~~-----~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p 386 (471)
++++ ++ +++.+..... ...+++.+.|.++..+|.+. ...++++.++.++++++.+.+.|+.++|+.+..|
T Consensus 253 ~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p 329 (403)
T TIGR01265 253 IIIHDPHGIFRDTVLQGLKNLLQ-RILGPATIVQGALPDILENT--PQEFFDGKISVLKSNAELCYEELKDIPGLVCPKP 329 (403)
T ss_pred EEEeCchhhhHHHHHHHHHHHhh-hhcCCChHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCC
Confidence 9984 23 4444444432 24568999999999999752 3688999999999999999999998888888889
Q ss_pred CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012095 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 387 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~~ 464 (471)
.+|+|+|++++...- ....++.++++.|++++||.+.||+.|+.++|+||+++.+++++++++++|.+++.+
T Consensus 330 ~~g~f~~~~~~~~~~------~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~~~~~~l~~~l~~l~~~~~~ 401 (403)
T TIGR01265 330 EGAMYLMVKLELELF------PEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRITITVPESMLEEACSRIKEFCER 401 (403)
T ss_pred CceeEEEEecccccc------CCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 999999999975310 001257789998887789999999999988999999999889999999999998865
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=433.36 Aligned_cols=385 Identities=28% Similarity=0.431 Sum_probs=313.4
Q ss_pred ccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCC---CCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHH
Q 012095 70 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP---DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLK 146 (471)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~---~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~ 146 (471)
+++..+.++.+..+.+.+......|+++|+|+.|+| ++++|+.+.+++.+.+.. ...|++..|.++||+++++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~ 86 (404)
T PRK09265 8 SKLENVCYDIRGPVLKEAKRLEEEGHKILKLNIGNPAPFGFEAPDEILRDVIRNLPT-AQGYSDSKGLFSARKAIMQYYQ 86 (404)
T ss_pred HHHHhcCcchhHHHHHHHHHHHHcCCCeEEecCCCCCcCCCCCCHHHHHHHHHHhhc-CCCCCCCCCcHHHHHHHHHHHh
Confidence 445556666666666777767667889999999998 466788888888876653 5789999999999999999998
Q ss_pred HHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc
Q 012095 147 EENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 226 (471)
Q Consensus 147 ~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~ 226 (471)
...+..+++++|++|+|+++++..++++++++||+|++++|+|..|...++..|++++.++++.+++|.+|+++++++++
T Consensus 87 ~~~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~ 166 (404)
T PRK09265 87 QKGIPDVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKIT 166 (404)
T ss_pred ccCCCCCCcccEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHHHHhcc
Confidence 65544688999999999999999999999999999999999999999999999999999988766678899999999998
Q ss_pred cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCc
Q 012095 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (471)
Q Consensus 227 ~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~ 306 (471)
+++++|++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++....++..+.. ..++|+++||||.||+
T Consensus 167 ~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~~ 244 (404)
T PRK09265 167 PRTKAIVIINPNNPTGAVYSKELLEEIVEIARQH-NLIIFADEIYDKILYDGAVHISIASLAP-DLLCVTFNGLSKAYRV 244 (404)
T ss_pred ccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHC-CCEEEEehhhhhccCCCCCcCCHHHcCC-CceEEEEecchhhccC
Confidence 8899999999999999999999999999999999 9999999999999887654555555543 3478999999999999
Q ss_pred cchhheeeEc--CHH----HHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 012095 307 TGWRLGYIAG--PKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 380 (471)
Q Consensus 307 ~G~R~G~v~~--~~~----~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g 380 (471)
+|+|+||+++ +++ +++.+... .....+++.++|.++.++|..... ...+....+.+.++|+.+.+.|++++|
T Consensus 245 pGlRiG~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~r~~~~~~L~~~~~ 322 (404)
T PRK09265 245 AGFRVGWMVLSGPKKHAKGYIEGLDML-ASMRLCANVPAQHAIQTALGGYQS-INELILPGGRLYEQRDRAWELLNAIPG 322 (404)
T ss_pred cccceEEEEEeCchHHHHHHHHHHHHH-hccccCCCcHHHHHHHHHhcCchh-HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999995 444 34444332 234567899999999999964111 111222235677889999999998888
Q ss_pred CeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHH
Q 012095 381 VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERI 458 (471)
Q Consensus 381 ~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l 458 (471)
+.+..|++|||+|++++.... ...++.+++..+++++||.+.||+.|+. ++|+|++++.+++++++++++|
T Consensus 323 ~~~~~p~~g~~l~~~~~~~~~-------~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~~~~e~l~~~l~rl 395 (404)
T PRK09265 323 VSCVKPKGALYAFPKLDPKVY-------PIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTLPRVDDLEEAIGRI 395 (404)
T ss_pred CcccCCCcceEEEEEeccccc-------CCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeCCCHHHHHHHHHHH
Confidence 998999999999999975210 0013455555566677999999999963 5799999988999999999999
Q ss_pred HHHHHhhC
Q 012095 459 KKGLLTLR 466 (471)
Q Consensus 459 ~~~l~~~~ 466 (471)
+++++..+
T Consensus 396 ~~~l~~~~ 403 (404)
T PRK09265 396 GRFLSGYR 403 (404)
T ss_pred HHHHHHhc
Confidence 99988654
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-54 Score=427.00 Aligned_cols=342 Identities=26% Similarity=0.484 Sum_probs=305.7
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cEEEeCChHHHHHHHHHHh
Q 012095 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAV 175 (471)
Q Consensus 97 ~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~i~it~G~~~al~~~~~~l 175 (471)
+++|+.|+|++++++.+.+++.+... ...+|++..|..+||+++++++++.+|++++++ +|++|+|+++++..++.++
T Consensus 2 ~~~~~~g~p~~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~ 80 (350)
T TIGR03537 2 LFDFGTGDPKEPTPPFIRKALIDAVP-EVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVF 80 (350)
T ss_pred eEeccCCCCCCCCCHHHHHHHHHHHh-ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHH
Confidence 68999999999989999999988764 467898889999999999999999999988897 9999999999999999999
Q ss_pred cCCC---CeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHH
Q 012095 176 CSPG---DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 252 (471)
Q Consensus 176 ~~~g---d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~ 252 (471)
+++| |+|++++|+|+.|...++..|++++.++++.+++|.+|+++++++++++++++++++||||||.+++.+++++
T Consensus 81 ~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~ 160 (350)
T TIGR03537 81 IDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTGATAPRSYLKE 160 (350)
T ss_pred cCCCCCCceEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCcCcccCHHHHHH
Confidence 9987 6999999999999999999999999999976678889999999999889999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhccc
Q 012095 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 332 (471)
Q Consensus 253 i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~ 332 (471)
|+++|++| +++||+||+|.++.+++ ...++..+. .+++|+++||||.+|++|+|+||+++++++++.+......+.
T Consensus 161 l~~~a~~~-~~~ii~De~y~~~~~~~-~~~~~~~~~--~~~~i~~~s~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~~ 236 (350)
T TIGR03537 161 TIAMCREH-GIILCSDECYTEIYFGE-PPHSALEVG--IENVLAFHSLSKRSGMTGYRSGFVAGDEKLISFLRKLRANFG 236 (350)
T ss_pred HHHHHHHc-CcEEEEeccccccccCC-CCCchhhcC--cCCEEEEeecccccCCccccceeeecCHHHHHHHHHHHHhhc
Confidence 99999999 99999999999887754 233343332 478999999999999999999999999999999998877777
Q ss_pred CCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCC
Q 012095 333 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 412 (471)
Q Consensus 333 ~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~ 412 (471)
.+.+.+.|.++.+++.+ ..|+++.++.++++++.+.+.|.+. |+++.+|+||||+|+++|+. .+
T Consensus 237 ~~~~~~~q~~~~~~l~~----~~~~~~~r~~l~~~~~~~~~~l~~~-g~~~~~~~g~~~~~~~~~~~-----------~~ 300 (350)
T TIGR03537 237 VASPDFVQAAAKAAWSD----DNHVLERRKIFKRKRDLFIEFFNKV-GLEYLYPDATFYLWVKVPSG-----------ID 300 (350)
T ss_pred cCCCHHHHHHHHHHhCC----cHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCeEEEEEEECCCC-----------CC
Confidence 77787888888888763 6788899999999999999999987 88888999999999999864 26
Q ss_pred HHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHH
Q 012095 413 SESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKK 460 (471)
Q Consensus 413 ~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~ 460 (471)
+.++++.|+++ ||.+.||..|+. ++++||+++.+++++++++++|++
T Consensus 301 ~~~l~~~L~~~-gv~v~~g~~f~~~~~~~~Ri~~~~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 301 AKDYALRLLEN-GIVVAPGENFGSGEEGYVRVALVPTLEECEEALRLWER 349 (350)
T ss_pred HHHHHHHHHHC-CEEEcCchhhCCCCCCEEEEEecCCHHHHHHHHHHHhc
Confidence 78899998875 999999999975 589999998888999999999875
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-53 Score=397.43 Aligned_cols=362 Identities=24% Similarity=0.426 Sum_probs=324.8
Q ss_pred CCCeEEcCCCCCC----CCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 94 GVSVIRLAAGEPD----FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 94 g~~~i~l~~g~~~----~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
++++|.|+.|+|. +.+.+++.+|+.+++..+ ..+|+|..|....|+++|+|+.+.....+++++|++|+|.++||
T Consensus 60 ~k~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAI 139 (447)
T KOG0259|consen 60 KKPILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAI 139 (447)
T ss_pred CceeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHH
Confidence 3489999999975 556788999999998875 57899999999999999999988777778999999999999999
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHH
Q 012095 169 LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKN 248 (471)
Q Consensus 169 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~ 248 (471)
+.++.+|.+||..||+|.|+|+.|...+...|.+++.+.+.++.+|.+|++.++++++++|.+|+|+||+||+|.+++.+
T Consensus 140 e~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~ 219 (447)
T KOG0259|consen 140 ELAISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSED 219 (447)
T ss_pred HHHHHHhcCCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCCCcccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCH--------HH
Q 012095 249 LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK--------HF 320 (471)
Q Consensus 249 ~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~--------~~ 320 (471)
.|++|+++|+++ +++||.||+|.+++|++.+..++..+.. --.+|.++|+||.+=.||||+||++.++ .+
T Consensus 220 HL~kiae~A~kl-gi~vIaDEVY~~~vfg~~pfvpmg~fss-iVPVitlggisKrW~VPGWRlGWi~~hD~~gvf~~~~~ 297 (447)
T KOG0259|consen 220 HLKKIAETAKKL-GIMVIADEVYGHTVFGDKPFVPMGKFSS-IVPVITLGGISKRWIVPGWRLGWIALHDPRGVFRDTKV 297 (447)
T ss_pred HHHHHHHHHHHh-CCeEEehhhcceeecCCCCccchhhccc-cCceEeecccccccccCCceeeeEEEecccccccchHH
Confidence 999999999999 9999999999999999887777776654 3578999999999989999999998743 34
Q ss_pred HHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCe-eeCCCcceEEeEecCCc
Q 012095 321 VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFSTY 399 (471)
Q Consensus 321 i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~-~~~p~~g~~~~~~~~~~ 399 (471)
++.+.+... .+.+++++.|.|.-..|... .+++.......++.+.++.++.|+++|++. ...|+|.+|+|++++-.
T Consensus 298 ~q~~~~~~~-~~~~p~TiiQ~AlP~IL~kT--p~efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPeg~mylmv~l~~s 374 (447)
T KOG0259|consen 298 VQGIKNFLD-IIPGPATIIQGALPDILEKT--PEEFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPEGCMYLMVKLNLS 374 (447)
T ss_pred HHHHHHHHh-ccCCccHhHHHHhHHHHHhC--hHHHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCCCcceEEEeccchh
Confidence 566666544 46689999999999999753 578999999999999999999999999998 57899999999987632
Q ss_pred cCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012095 400 YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~~~~ 466 (471)
-+..+.++.+|+.+|.++..|.+.||..|+.++|+|++++...+.+++++.||+.+..+..
T Consensus 375 ------~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~i~~~~~~leea~~Rik~Fc~RH~ 435 (447)
T KOG0259|consen 375 ------LFPDIEDDVDFCQKLAREESVICLPGQAFGLKNWLRIVITVEEEMLEEAFSRIKEFCDRHS 435 (447)
T ss_pred ------hhccccccHHHHHHHhhhcceEEeccccccCCCeEEEEEccChHHHHHHHHHHHHHHHhhh
Confidence 1112357889999999999999999999999999999999999999999999999987654
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-54 Score=443.21 Aligned_cols=361 Identities=20% Similarity=0.334 Sum_probs=300.6
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHH------------cCCCCCCCCCCCHHHHHHHHHHHHHHhCC--CCCCCcEEEe
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIR------------EGFTRYTPNAGTLELRSAICHKLKEENGL--SYTPDQILVS 161 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~------------~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~--~~~~~~i~it 161 (471)
.+|+|+.++|.+.. +.+.+.+..... .....|++..|.++||++|++++++.+|. ++++++|++|
T Consensus 39 g~i~L~~~En~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit 117 (468)
T PLN02450 39 GIIQMGLAENQLSF-DLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLT 117 (468)
T ss_pred eeEEeehhHhHhhH-HHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcChHHeEEc
Confidence 58999999998765 555555544311 12345988889999999999999988774 4689999999
Q ss_pred CChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHH-HcCCEEEEecCCCCCCCcCCHHHHHhhhcc------CCcEEEE
Q 012095 162 NGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR-IADATPVILPTRISENFLLDPKVLESKLTE------KSRLLIL 234 (471)
Q Consensus 162 ~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~------~~~~i~i 234 (471)
+|+++++..++.++++|||.|++++|+|+.|...+. ..|++++.|+++.+++|.+|++.+++++.+ ++|+|++
T Consensus 118 ~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l 197 (468)
T PLN02450 118 AGATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLI 197 (468)
T ss_pred cChHHHHHHHHHHhCCCCCEEEECCCCCCchHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEE
Confidence 999999999999999999999999999999988887 589999999998778899999999988753 7899999
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCC--------CCCCceEEEecCCcccCc
Q 012095 235 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP--------GMWERTLTVNGFSKAFAM 306 (471)
Q Consensus 235 ~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~--------~~~~~~i~~~S~SK~~g~ 306 (471)
+|||||||.++|.+++++|+++|++| +++||+||+|.++.|++....++..+. ...+++++++||||.||+
T Consensus 198 ~nP~NPTG~~~s~e~l~~ll~~a~~~-~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l 276 (468)
T PLN02450 198 TNPSNPLGTTTTRTELNLLVDFITAK-NIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGL 276 (468)
T ss_pred ecCCCCCCcccCHHHHHHHHHHHHHC-CcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCC
Confidence 99999999999999999999999999 999999999999888764333433221 125799999999999999
Q ss_pred cchhheeeEcCHH-HHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC
Q 012095 307 TGWRLGYIAGPKH-FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385 (471)
Q Consensus 307 ~G~R~G~v~~~~~-~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~ 385 (471)
+|+|+||++++++ +++.+.+.... .+++.++|.++..+|.++.+...++++.+++|+++++.+.+.|+++ |+.+.+
T Consensus 277 ~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~-gi~~~~ 353 (468)
T PLN02450 277 PGFRVGAIYSNDEMVVSAATKMSSF--GLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAA-GIKCLK 353 (468)
T ss_pred CCccEEEEEECCHHHHHHHHHHhhc--CCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcccC
Confidence 9999999999754 66766665432 3478999999999998743323578899999999999999999998 898889
Q ss_pred CCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeec-CHHHHHHHHHHHHHHH
Q 012095 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAA-SLTTLQAAVERIKKGL 462 (471)
Q Consensus 386 p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~-~~e~i~~~~~~l~~~l 462 (471)
|++|||+|++++..... . ......+++++|++++||.+.||+.|+. ++||||+|+. +++++++++++|++++
T Consensus 354 ~~~g~flwi~l~~~~~~--~---~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~~~~~~l~~~l~ri~~~l 428 (468)
T PLN02450 354 SNAGLFCWVDMRHLLKS--N---TFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFANMSEETLDLAMKRLKSFV 428 (468)
T ss_pred CCceEEEEEEchHhcCc--C---CchHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 99999999999753210 0 0113467888898888999999999875 5899999997 8899999999999998
Q ss_pred HhhC
Q 012095 463 LTLR 466 (471)
Q Consensus 463 ~~~~ 466 (471)
++.+
T Consensus 429 ~~~~ 432 (468)
T PLN02450 429 ESDS 432 (468)
T ss_pred Hhcc
Confidence 7654
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-54 Score=437.50 Aligned_cols=357 Identities=23% Similarity=0.329 Sum_probs=287.2
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHH-HhCCCC-C--CCcEEEeCChHHHHHHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE-ENGLSY-T--PDQILVSNGAKQSILQA 171 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~-~~g~~~-~--~~~i~it~G~~~al~~~ 171 (471)
++|+|+.|+|++++|+.+.++.. ++. +. +|+++.|.++||++|++++.+ .++... . .++|++|+|+++++..+
T Consensus 101 ~~i~l~~g~p~~~~~~~v~e~~~-~~~-~~-~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~ 177 (527)
T PRK09275 101 DAVSYVRDQLGFDADEFVYELVD-GII-GD-NYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYI 177 (527)
T ss_pred HHHhhcCCCCCCCCCHHHHHHHH-HHh-cC-CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHH
Confidence 47999999999999998888554 443 33 599999999999999996644 333222 2 34999999999999998
Q ss_pred HHH-----hcCCCCeEEEcCCCCCChHHHHHHcC--CEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccC
Q 012095 172 VLA-----VCSPGDEVIIPAPFWVSYPEMARIAD--ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 244 (471)
Q Consensus 172 ~~~-----l~~~gd~Vlv~~p~y~~~~~~~~~~G--~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~ 244 (471)
+.+ +++|||+|++++|+|+.|...+++.| ++++.++.+++++|.+|++++++++++++|+|+|+|||||||.+
T Consensus 178 ~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tkai~l~nP~NPTG~v 257 (527)
T PRK09275 178 FDSLKENGLLKAGDKIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDPSIKALFLVNPSNPPSVA 257 (527)
T ss_pred HHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCCCCCEEEEeCCcCCcCCC
Confidence 886 68999999999999999999988885 45566665566789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhC-CCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHH----
Q 012095 245 YPKNLLDEIARIVAKH-PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH---- 319 (471)
Q Consensus 245 ~~~~~l~~i~~l~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~---- 319 (471)
++++++++|+++|+++ ++++||+||+|.++.+. ..++... ..+++|+++||||.|||+|||+||++++++
T Consensus 258 ~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~---~~s~~~~--~~~~~I~v~SfSK~f~mtG~RlG~i~~~~~~v~~ 332 (527)
T PRK09275 258 MSDESLEKIADIVNEKRPDLMIITDDVYGTFVDD---FRSLFAV--LPYNTILVYSFSKYFGATGWRLGVIALHEDNVFD 332 (527)
T ss_pred CCHHHHHHHHHHHHhcCCCcEEEECCCChhhccc---ccCHHHh--CCCCEEEEeehhhhccCcHhHHhhhhcCchhHHH
Confidence 9999999999999542 28999999999998642 2333333 247899999999999999999999999876
Q ss_pred -HHHHH--------------------------------HHHHhcccCCCChHHHHHH-----HHHHhccCCChHHHHHHH
Q 012095 320 -FVAAC--------------------------------NKIQSQFTSGASSISQKAG-----VAALGLGYAGGEVVSKMV 361 (471)
Q Consensus 320 -~i~~l--------------------------------~~~~~~~~~~~~~~~q~aa-----~~~L~~~~~~~~~~~~~~ 361 (471)
+++.+ +++..+.+.|++++.|.++ .++|+. .+.++++++
T Consensus 333 ~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~all~~---~~~~~~~~~ 409 (527)
T PRK09275 333 KLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALLDE---EDAYKKAMK 409 (527)
T ss_pred HHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC---chHHHHHHH
Confidence 43333 4666777889999999872 344554 467899999
Q ss_pred HHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCcc----CCcccC-CCCCCCHHHHHHHHHHcCCEEEECCCCCCC
Q 012095 362 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYY----GSEAEG-FGKIENSESLCRYLLDKAQVALVPGDAFGD 436 (471)
Q Consensus 362 ~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~----~~~~~~-~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~ 436 (471)
+.|++|++.+.+.|. + ++...+|+|+||+|++++... +..... .....++.+|+.+|++++||.+.||+.|+.
T Consensus 410 ~~~~~Rr~~l~~~Lg-~-~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~e~gV~v~PG~~Fg~ 487 (527)
T PRK09275 410 DIIRRRYKALYEGLG-L-PEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAEETGVVLLPGGGFGG 487 (527)
T ss_pred HHHHHHHHHHHHHcC-C-CCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHHHHHhcCCEEEeCchhhCC
Confidence 999999999999983 2 344457999999999997421 000000 000125789999999999999999999985
Q ss_pred -CCcEEEEeec-CHHHHHHHHHHHHHHHHhh
Q 012095 437 -DTCIRISYAA-SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 437 -~~~iRis~~~-~~e~i~~~~~~l~~~l~~~ 465 (471)
++++|+|++. +++++.++.++|++++.++
T Consensus 488 ~~~~vRis~a~~~~~~~~~~~~rl~~~l~~y 518 (527)
T PRK09275 488 PEWSVRVSLANLNEEDYAKIGKAIRKLLDEY 518 (527)
T ss_pred CCCeEEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 5789999996 8899999999999998765
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=429.78 Aligned_cols=329 Identities=23% Similarity=0.338 Sum_probs=281.1
Q ss_pred cccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCC--------C----------------------CChHHHHHH
Q 012095 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPD--------F----------------------DTPVLIAEA 116 (471)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~--------~----------------------~~p~~v~~a 116 (471)
.+++++..++.+....+...+.++++.|.++|+|++|+|+ + .+|+.+.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~vi~l~iG~Pd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~i~~a 89 (407)
T PLN02368 10 SLNENVKKCQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPNVGLLFPADAIARA 89 (407)
T ss_pred hcCHHHHhhhhhcCCHHHHHHHHHHHHhhhhhcccCCChhHcCCCCchHHHHHHHHhcCchhcCCccccccCCHHHHHHH
Confidence 3677788888887778888888888889999999999997 3 255666666
Q ss_pred HHHHHH--cCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhc-CCCCeEEEcCCCCCChH
Q 012095 117 GINAIR--EGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-SPGDEVIIPAPFWVSYP 193 (471)
Q Consensus 117 ~~~~~~--~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~ 193 (471)
...... .+..+|++..|.++||++|++++++.+|+++++++|++|+|+++++..++.+++ +|||+|++++|+|+.|.
T Consensus 90 ~~~l~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~ 169 (407)
T PLN02368 90 KHYLSLTSGGLGAYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYS 169 (407)
T ss_pred HHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHH
Confidence 544221 236789999999999999999999988988999999999999999999999987 79999999999999999
Q ss_pred HHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc------CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEE
Q 012095 194 EMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLS 267 (471)
Q Consensus 194 ~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~------~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~ 267 (471)
..++..|++++.++++.+++|.+|++.+++.+++ ++|+++++|||||||.+++++++++|+++|++| +++||+
T Consensus 170 ~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~-~~~II~ 248 (407)
T PLN02368 170 ATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQE-RLVLLG 248 (407)
T ss_pred HHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHc-CCEEEE
Confidence 9999999999999998777899999999999864 689999999999999999999999999999999 999999
Q ss_pred ccCCCccccCCC-CccccccC----CC---CCCceEEEecCCccc-CccchhheeeE---cCHHHHHHHHHHHhcccCCC
Q 012095 268 DEIYEHIIYAPA-THTSFASL----PG---MWERTLTVNGFSKAF-AMTGWRLGYIA---GPKHFVAACNKIQSQFTSGA 335 (471)
Q Consensus 268 De~y~~~~~~~~-~~~~~~~~----~~---~~~~~i~~~S~SK~~-g~~G~R~G~v~---~~~~~i~~l~~~~~~~~~~~ 335 (471)
||+|.++.|++. .+.++..+ .. ..+++|+++||||.| ||+|||+||++ +++++++.+.+... ...++
T Consensus 249 DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~~-~~~~~ 327 (407)
T PLN02368 249 DEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVAS-IALSP 327 (407)
T ss_pred EccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHhc-ccCCC
Confidence 999999999764 33444332 11 135899999999999 89999999998 58999999988753 45679
Q ss_pred ChHHHHHHHHHHhccCC----ChHHH---HHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecC
Q 012095 336 SSISQKAGVAALGLGYA----GGEVV---SKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS 397 (471)
Q Consensus 336 ~~~~q~aa~~~L~~~~~----~~~~~---~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~ 397 (471)
+.++|.++.++|..... ...+. +++++.|++||+++.+.|++++|+.+..|+|+||+|++++
T Consensus 328 ~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~~P~Gafy~~~~i~ 396 (407)
T PLN02368 328 NVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCNFTEGAMYSFPQIK 396 (407)
T ss_pred CcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeCCCCeeeEeccCCC
Confidence 99999999999975310 01234 4578999999999999999999999999999999998775
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-53 Score=436.03 Aligned_cols=363 Identities=21% Similarity=0.367 Sum_probs=298.3
Q ss_pred CeEEcCCCCCCC--CC-hHHHHHHHHHHHHc--------CCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCcEEEeC
Q 012095 96 SVIRLAAGEPDF--DT-PVLIAEAGINAIRE--------GFTRYTPNAGTLELRSAICHKLKEENG--LSYTPDQILVSN 162 (471)
Q Consensus 96 ~~i~l~~g~~~~--~~-p~~v~~a~~~~~~~--------~~~~Y~~~~G~~~lr~~ia~~~~~~~g--~~~~~~~i~it~ 162 (471)
.+|+|+.+++.+ +. ++.+++.....+.. ....|++..|.++||++|++++++.+| +++++++|++|+
T Consensus 47 g~i~l~~aEN~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~ 126 (496)
T PLN02376 47 GIIQMGLAENQLCLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSG 126 (496)
T ss_pred ceEEeecchhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEcc
Confidence 589999999877 44 55565544432111 234688889999999999999999888 668999999999
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHH-HcCCEEEEecCCCCCCCcCCHHHHHhhh------ccCCcEEEEc
Q 012095 163 GAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR-IADATPVILPTRISENFLLDPKVLESKL------TEKSRLLILC 235 (471)
Q Consensus 163 G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-~~G~~~~~v~~~~~~~~~ld~e~l~~~l------~~~~~~i~i~ 235 (471)
|+++++..++.++++|||.|++++|+|+.|...++ ..|++++.|+++.+++|++|++.+++++ ..++|+|+++
T Consensus 127 Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~ 206 (496)
T PLN02376 127 GATGANETIMFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILT 206 (496)
T ss_pred chHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEc
Confidence 99999999999999999999999999999998777 5899999999987678899999998653 2468999999
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCC-------CCceEEEecCCcccCccc
Q 012095 236 SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-------WERTLTVNGFSKAFAMTG 308 (471)
Q Consensus 236 ~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-------~~~~i~~~S~SK~~g~~G 308 (471)
|||||||.+++.+++++|+++|++| +++||+||+|.++.|++....++.++... .+++++++||||.||++|
T Consensus 207 nP~NPTG~~~s~e~l~~L~~~a~~~-~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpG 285 (496)
T PLN02376 207 NPSNPLGTMLDKDTLTNLVRFVTRK-NIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPG 285 (496)
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHc-CCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCc
Confidence 9999999999999999999999999 99999999999999877555565544211 146788999999999999
Q ss_pred hhheeeEcC-HHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC
Q 012095 309 WRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (471)
Q Consensus 309 ~R~G~v~~~-~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~ 387 (471)
+|+||++++ +.+++.+...... ...+.+.|.++..+|.++.+.+.++.+.++.|+++++.+.+.|++. |+.+.+|+
T Consensus 286 lRvG~li~~~~~l~~~~~~~~~~--~~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~-gi~~~~~~ 362 (496)
T PLN02376 286 FRVGIVYSFNDSVVSCARKMSSF--GLVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKA-DIACLTSN 362 (496)
T ss_pred ceEEEEEECCHHHHHHHHHHhhc--CCCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCC
Confidence 999999985 5666665554432 2478999999999998643224567778999999999999999987 88888899
Q ss_pred cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeec-CHHHHHHHHHHHHHHHHh
Q 012095 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAA-SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 388 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~-~~e~i~~~~~~l~~~l~~ 464 (471)
||+|+|+++++.... .. ...+..++++.|+++.||.+.||+.|+. ++||||+|+. +++++++++++|++++.+
T Consensus 363 aG~flwi~l~~~~~~-~~---~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~~~~~~l~~al~rl~~~l~~ 438 (496)
T PLN02376 363 AGLFAWMDLRHLLRD-RN---SFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFANMDDDTLHVALGRIQDFVSK 438 (496)
T ss_pred ceEEEEEEchhhhcc-CC---chhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeCCCHHHHHHHHHHHHHHHHH
Confidence 999999999754210 00 0113468899999888999999999974 5899999996 889999999999999975
Q ss_pred hC
Q 012095 465 LR 466 (471)
Q Consensus 465 ~~ 466 (471)
.+
T Consensus 439 ~~ 440 (496)
T PLN02376 439 NK 440 (496)
T ss_pred hh
Confidence 43
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-53 Score=430.94 Aligned_cols=342 Identities=21% Similarity=0.269 Sum_probs=295.8
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHH
Q 012095 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 173 (471)
Q Consensus 94 g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~ 173 (471)
+..+++|+.|.|+.++++.+.+++.+... ....|++..|..+||+++++++.+..+ .+++|++|+|++++|..+++
T Consensus 84 ~~~~i~L~~g~p~~~~~p~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~ia~~~~~~~~---~~~~Iiit~G~~~al~~~~~ 159 (431)
T PRK15481 84 GTPLHDLAGGNPDPQRLPDLSRYFARLSR-TPRLYGDAPVSPELHAWAARWLRDDCP---VAFEIDLTSGAIDAIERLLC 159 (431)
T ss_pred cchhhhhhcCCCChhHhHHHHHHHHHhhh-hhhhcCCcCCCHHHHHHHHHHHhhccC---CcCeEEEecCcHHHHHHHHH
Confidence 34579999999988887778787777553 346799999999999999999875433 45799999999999999999
Q ss_pred HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEc-CCCCCcccCCCHHHHHH
Q 012095 174 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILC-SPSNPTGSVYPKNLLDE 252 (471)
Q Consensus 174 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~-~p~NPtG~~~~~~~l~~ 252 (471)
++++|||+|++++|+|+.|...++..|++++.+|++.+ ++|++.+++++++++|+++++ |||||||.+++.+++++
T Consensus 160 ~l~~pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~---g~~~~~l~~~~~~~~k~i~~~p~p~NPTG~~~s~~~~~~ 236 (431)
T PRK15481 160 AHLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSVDAE---GMQPEKLERALAQGARAVILTPRAHNPTGCSLSARRAAA 236 (431)
T ss_pred HhCCCCCEEEEeCCCcHHHHHHHHHcCCeEEeeccCCC---CCCHHHHHHHHhcCCCEEEECCCCCCCCCccCCHHHHHH
Confidence 99999999999999999999999999999999998643 389999999998889999886 99999999999999999
Q ss_pred HHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhccc
Q 012095 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 332 (471)
Q Consensus 253 i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~ 332 (471)
|+++|++|++++||+||+|.++.+++. .+... ...+++|+++||||.|| +|+|+||+++++++++.+.+......
T Consensus 237 l~~la~~~~~~~ii~De~Y~~~~~~~~--~~~~~--~~~~~vi~~~SfSK~~~-~GlRiG~~i~~~~~~~~~~~~~~~~~ 311 (431)
T PRK15481 237 LRNLLARYPQVLVIIDDHFALLSSSPY--HSVIP--QTTQRWALIRSVSKALG-PDLRLAFVASDSATSARLRLRLNSGT 311 (431)
T ss_pred HHHHHHhcCCceEEecCchhhhccCCC--CCCCc--CCCCCEEEEeeeccccC-CCceeEEEeCCHHHHHHHHHHHhccc
Confidence 999999876899999999999976542 22222 23479999999999999 99999999999999999987766656
Q ss_pred CCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCC
Q 012095 333 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 412 (471)
Q Consensus 333 ~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~ 412 (471)
.+++.++|.++..+|+++.. .+|++++++.|+++++.+.+.|++. |+.+..|++|||+|++++. +
T Consensus 312 ~~~s~~~q~a~~~~l~~~~~-~~~l~~~~~~~~~~r~~~~~~L~~~-~~~~~~p~gg~f~~~~l~~-------------~ 376 (431)
T PRK15481 312 QWVSHLLQDLVYACLTDPEY-QARLAQARLFYAQRRQKLARALQQY-GIAIPSPGDGLNLWLPLDT-------------D 376 (431)
T ss_pred cCCCHHHHHHHHHHHhCccH-HHHHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCeEEEEEECCC-------------C
Confidence 67899999999999987432 5789999999999999999999987 8888789999999999974 4
Q ss_pred HHHHHHHHHHcCCEEEECCCCCCCC---CcEEEEeec-CHHHHHHHHHHHHHHHH
Q 012095 413 SESLCRYLLDKAQVALVPGDAFGDD---TCIRISYAA-SLTTLQAAVERIKKGLL 463 (471)
Q Consensus 413 ~~~l~~~Ll~~~gV~v~pg~~f~~~---~~iRis~~~-~~e~i~~~~~~l~~~l~ 463 (471)
..++++.|.+ +||.+.||..|+.. +++||+++. +++++++++++|++++.
T Consensus 377 ~~~~~~~l~~-~gV~v~pg~~f~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 377 SQATALTLAK-SGWLVREGEAFGVSAPSHGLRITLSTLNDAEINRLAADLHQALN 430 (431)
T ss_pred HHHHHHHHHH-CCcEEecCCccccCCCCCeEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 5788888875 59999999999643 689999998 88999999999998874
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-52 Score=426.36 Aligned_cols=353 Identities=26% Similarity=0.443 Sum_probs=315.1
Q ss_pred CCeEEcCCCCCCCCC-h-HHHHHHHHHHHHc---C-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 95 VSVIRLAAGEPDFDT-P-VLIAEAGINAIRE---G-FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~-p-~~v~~a~~~~~~~---~-~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
...++|+.|.|+... | ..+.+++.+.+.. . ...|++..|.++||++|++++....|+.+++++|++|+|+++++
T Consensus 89 ~~~i~f~~g~p~~~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al 168 (459)
T COG1167 89 PSVIDFAGGLPDPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQAL 168 (459)
T ss_pred CceecCCCCCCCcccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHH
Confidence 679999999976644 3 4566666666532 2 46888889999999999999998899999999999999999999
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc-CCcEEEE-cCCCCCcccCCC
Q 012095 169 LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLIL-CSPSNPTGSVYP 246 (471)
Q Consensus 169 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~-~~~~i~i-~~p~NPtG~~~~ 246 (471)
.++++.+++|||+|++++|+|.....+++..|++++.||++.++ +|+|.|++.+.. ++|++|+ ++-|||||.+||
T Consensus 169 ~l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~~G---~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms 245 (459)
T COG1167 169 DLLLRLLLDPGDTVLVEDPTYPGALQALEALGARVIPVPVDEDG---IDPEALEEALAQWKPKAVYVTPTFQNPTGVTMS 245 (459)
T ss_pred HHHHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCCCCC---CCHHHHHHHHhhcCCcEEEECCCCCCCCCCccC
Confidence 99999999999999999999999999999999999999998433 999999999865 7898885 677999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHH
Q 012095 247 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 326 (471)
Q Consensus 247 ~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~ 326 (471)
.+++++|+++|++| |++||+||+|++|.|++...+++..++. .++||+++||||+++ ||+|+||+++|+++++++..
T Consensus 246 ~~rR~~Ll~lA~~~-~~~IIEDD~y~el~~~~~p~~~l~~ld~-~~rViy~gSFSK~l~-PglRlG~vv~p~~~~~~~~~ 322 (459)
T COG1167 246 LERRKALLALAEKY-DVLIIEDDYYGELRYDGPPPPPLKALDA-PGRVIYLGSFSKTLA-PGLRLGYVVAPPELIEKLLR 322 (459)
T ss_pred HHHHHHHHHHHHHc-CCeEEeeCcchhhhcCCCCCCChHhhCC-CCCEEEEeeehhhcc-cccceeeeeCCHHHHHHHHH
Confidence 99999999999999 9999999999999999776666777765 699999999999996 99999999999999999999
Q ss_pred HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCC-C-CCeeeCCCcceEEeEecCCccCCcc
Q 012095 327 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL-E-GVKMSEPQGAFYLFIDFSTYYGSEA 404 (471)
Q Consensus 327 ~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~-g~~~~~p~~g~~~~~~~~~~~~~~~ 404 (471)
.+.....+++.+.|.++...+.++.+ ..|+++++..|+++++.+.+.|.+. + ++.|..|.||||+|+++|+.+
T Consensus 323 ~k~~~~~~~s~~~Q~~la~~l~~G~~-~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~gG~flwl~l~~~~---- 397 (459)
T COG1167 323 LKQAADLGPSSLSQAALAAFLLSGHY-DRHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLELPEGI---- 397 (459)
T ss_pred HHHHhcCCCChHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecCCceEEEEEEcCCCC----
Confidence 99999999999999999999996544 8999999999999999999999996 3 588999999999999999863
Q ss_pred cCCCCCCCHHHHHHHHHHcCCEEEEC-CCCCCCC----CcEEEEeec-CHHHHHHHHHHHHHHHHhhC
Q 012095 405 EGFGKIENSESLCRYLLDKAQVALVP-GDAFGDD----TCIRISYAA-SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 405 ~~~~~~~~~~~l~~~Ll~~~gV~v~p-g~~f~~~----~~iRis~~~-~~e~i~~~~~~l~~~l~~~~ 466 (471)
++.++.+.++++ ||.+.| |..|... +++|++|+. +++++++++.+|.+++++..
T Consensus 398 -------~~~~l~~~a~~~-gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~~e~i~~gi~~l~~~~~~~~ 457 (459)
T COG1167 398 -------DARELLAAALEK-GVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLAALLREAA 457 (459)
T ss_pred -------CHHHHHHHHHHC-CCEEEcCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 788999988876 888888 8888753 489999999 88999999999999998754
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-52 Score=420.97 Aligned_cols=367 Identities=28% Similarity=0.403 Sum_probs=299.1
Q ss_pred cccccCCC-hHHHHHHHHHHHHh--cCCCeEEcCCCCCCCCChHHHHHHHHHHHHcC-----CCCCCCCCCCHHHHHHHH
Q 012095 71 RVNAVKPS-KTVAITDQATALAQ--AGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-----FTRYTPNAGTLELRSAIC 142 (471)
Q Consensus 71 ~~~~~~~~-~~~~~~~~~~~~~~--~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~-----~~~Y~~~~G~~~lr~~ia 142 (471)
.+..++++ .+..+......... .+.++|+|+.|+|++++++.+.+++.+.+.+. ...|+|..|.++||++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia 85 (402)
T TIGR03542 6 HFLKLKSSYLFSEINRRVNEFRKKHPSADIIRLGIGDTTQPLPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIA 85 (402)
T ss_pred CccccCcchHHHHHHHHHHHHHhccCCCCeEEcCCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHH
Confidence 34455554 34445555554443 36789999999999999999999998887642 356989999999999999
Q ss_pred HHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCC-----------EEEEecCCCC
Q 012095 143 HKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA-----------TPVILPTRIS 211 (471)
Q Consensus 143 ~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~-----------~~~~v~~~~~ 211 (471)
+++.+. + +++++|++|+|+++++..+ ..++.+||+|++++|+|..|...++..|+ +++.++++.+
T Consensus 86 ~~~~~~-~--~~~d~I~it~Ga~~al~~l-~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~ 161 (402)
T TIGR03542 86 ENDYRG-R--IDPEEIFISDGAKCDVFRL-QSLFGSDNTVAVQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCTKE 161 (402)
T ss_pred HHHHhc-C--CCHHHEEECCCcHHHHHHH-HHhcCCCCEEEEeCCCCcchHHHHHHcCCccccccccccceEEEeecchh
Confidence 986321 2 6889999999999999976 45668999999999999999999999999 9999998766
Q ss_pred CCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCC
Q 012095 212 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 291 (471)
Q Consensus 212 ~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~ 291 (471)
++|.+|++. .+++++|+++|||||||.++|.+++++|+++|++| +++||+||+|.++.+++....++..++...
T Consensus 162 ~~~~~~~~~-----~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~-~~~iI~De~y~~~~~~~~~~~~~~~~~~~~ 235 (402)
T TIGR03542 162 NNFIPDLPE-----EPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEH-GSLILFDAAYSAFISDPSLPHSIFEIPGAK 235 (402)
T ss_pred hCCCCCccc-----cCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHc-CeEEEEEchhhhhccCCCCCcchhhCCCCc
Confidence 666666432 24789999999999999999999999999999999 999999999999987654334455555445
Q ss_pred CceEEEecCCcccCccchhheeeEcCHHHH--------HHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHH
Q 012095 292 ERTLTVNGFSKAFAMTGWRLGYIAGPKHFV--------AACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (471)
Q Consensus 292 ~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i--------~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~ 363 (471)
+++|+++||||.||++|+|+||++++++++ +.+.........+++.++|.++..++... ...++.+.++.
T Consensus 236 ~~vi~~~SfSK~~g~pGlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~--~~~~~~~~~~~ 313 (402)
T TIGR03542 236 ECAIEFRSFSKTAGFTGVRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGE--GLQPILEAISY 313 (402)
T ss_pred ccEEEEecCccccCCCCcceEEEEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCc--chhHHHHHHHH
Confidence 789999999999999999999999999887 22222222233358889999988888753 13567778899
Q ss_pred HHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEE
Q 012095 364 FRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIR 441 (471)
Q Consensus 364 ~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iR 441 (471)
|+++++.+.+.|++. |+++..|.+++|+|++++... ++.+++++|++++||.+.||+.|+. ++|+|
T Consensus 314 ~~~~~~~~~~~L~~~-~~~~~~~~~~~f~~v~l~~~~-----------~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iR 381 (402)
T TIGR03542 314 YMENARILRKALEAA-GFKVYGGEHAPYLWVKTPEGI-----------SSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVR 381 (402)
T ss_pred HHHHHHHHHHHHHhc-CceecCCCceeEEEEECCCCC-----------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEE
Confidence 999999999999987 788888889999999998642 6778999999878999999999875 47999
Q ss_pred EEeecCHHHHHHHHHHHHHH
Q 012095 442 ISYAASLTTLQAAVERIKKG 461 (471)
Q Consensus 442 is~~~~~e~i~~~~~~l~~~ 461 (471)
|+++.+++++++++++|+++
T Consensus 382 is~~~~~~~l~~~l~~l~~~ 401 (402)
T TIGR03542 382 FSAFGKRENIVEACERIKEA 401 (402)
T ss_pred EEecCCHHHHHHHHHHHHhh
Confidence 99888889999999999875
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-52 Score=414.51 Aligned_cols=355 Identities=27% Similarity=0.373 Sum_probs=296.6
Q ss_pred cccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHH
Q 012095 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLK 146 (471)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~ 146 (471)
.+++++...... .+...+......+.++|+|+.|+|..+.++.+.+++.+... ..+|++..|.++||+++++++.
T Consensus 2 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~l~ 76 (364)
T PRK07865 2 PVSARLPDFPWD---TLAPAKATAAAHPDGIVDLSVGTPVDPVPPVIQEALAAAAD--APGYPTTAGTPELREAIVGWLA 76 (364)
T ss_pred CccccCCCccHH---HHHHHHHHHHhcCCCEEEcCCCCCCCCCCHHHHHHHHHHHh--hCCCCCccCCHHHHHHHHHHHH
Confidence 455666555544 33333333334667899999999987778888888876543 3589888999999999999999
Q ss_pred HHhCCC-CCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhh
Q 012095 147 EENGLS-YTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESK 224 (471)
Q Consensus 147 ~~~g~~-~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~ 224 (471)
+.+|++ +++++|++|+|+++++..++..+ +++||.|++++|+|+.|...++..|++++.++. +++++.
T Consensus 77 ~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~---------~~~l~~- 146 (364)
T PRK07865 77 RRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEVGARLAGATVVRADS---------LTELGP- 146 (364)
T ss_pred HHcCCCCCCcccEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccHHHHHHhcCCEEEecCC---------hhhCCc-
Confidence 999987 89999999999999999888888 799999999999999999999999999988752 233322
Q ss_pred hccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccC---CCCCCceEEEecCC
Q 012095 225 LTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL---PGMWERTLTVNGFS 301 (471)
Q Consensus 225 l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~---~~~~~~~i~~~S~S 301 (471)
+++++|++++||||||.+++.+++++|+++|++| +++||+||+|.++.+++.. .+.... ....+++|+++|||
T Consensus 147 --~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~S~S 222 (364)
T PRK07865 147 --QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARER-GAVVASDECYLELGWDAEP-VSILDPRVCGGDHTGLLAVHSLS 222 (364)
T ss_pred --ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHc-CCEEEEecchhhhccCCCC-CccccccccCCccceEEEEeech
Confidence 5789999999999999999999999999999999 9999999999998876532 222111 12347899999999
Q ss_pred cccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 012095 302 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 381 (471)
Q Consensus 302 K~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~ 381 (471)
|.||++|+|+||+++++++++.+.+.+.....+++.+.|.++..+|.+ .+++++.++.|+++++.+.+.|++. |+
T Consensus 223 K~~~~~GlRiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~ 297 (364)
T PRK07865 223 KQSNLAGYRAGFVAGDPALVAELLEVRKHAGMMVPAPVQAAMVAALGD----DAHVREQRERYARRRAVLRPALEAA-GF 297 (364)
T ss_pred hccCCCceeeEEEecCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 999999999999999999999999887777778899999999998874 6788899999999999999999987 88
Q ss_pred eeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHH
Q 012095 382 KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIK 459 (471)
Q Consensus 382 ~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~ 459 (471)
.+..|++|||+|++++. +..++.+.|.+ .||.+.||..|+. ++++||+++.+++++++++++|+
T Consensus 298 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~~-~gv~v~pg~~f~~~~~~~iRi~~~~~~~~~~~~~~~l~ 363 (364)
T PRK07865 298 RVDHSEAGLYLWATRGE-------------DCWDTVAWLAE-RGILVAPGDFYGPAGAQHVRVALTATDERIAAAVERLA 363 (364)
T ss_pred cccCCCccEEEEEeCCC-------------CHHHHHHHHHH-CCEEEeCccccCcCCCCEEEEEecCCHHHHHHHHHHhh
Confidence 88889999999998742 45677777655 5999999998873 57999999988899999999985
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=388.75 Aligned_cols=355 Identities=29% Similarity=0.503 Sum_probs=323.9
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHH
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~ 174 (471)
.+++-|+..+.+|+.|+.+++|+++.++.+..+|+ .+..++-+++++|++++++..+.++.|++++|...++..+++.
T Consensus 25 ~DvlPmWVADMDf~~pp~i~~Al~~rvdhGvfGY~--~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~ 102 (388)
T COG1168 25 EDVLPMWVADMDFPTPPEIIEALRERVDHGVFGYP--YGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRA 102 (388)
T ss_pred CCcceeeeecccCCCCHHHHHHHHHHHhcCCCCCC--CCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHH
Confidence 57999999999999999999999999999999994 6788999999999999999999999999999999999999999
Q ss_pred hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCC-CCCCcCCHHHHHhhhcc-CCcEEEEcCCCCCcccCCCHHHHHH
Q 012095 175 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI-SENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDE 252 (471)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~ld~e~l~~~l~~-~~~~i~i~~p~NPtG~~~~~~~l~~ 252 (471)
|.+|||.|++..|.|+++....+..|.+++..|+.. ++.|.+|.++|++++.+ ++|++++||||||||.++++++|++
T Consensus 103 ~T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~ 182 (388)
T COG1168 103 LTKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRK 182 (388)
T ss_pred hCcCCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHH
Confidence 999999999999999999999999999999999984 45688999999998865 5689999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEccCCCccccCCCCccccccCCC-CCCceEEEecCCcccCccchhheeeEcC-HHHHHH-HHHHHh
Q 012095 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG-MWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAA-CNKIQS 329 (471)
Q Consensus 253 i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~g~~G~R~G~v~~~-~~~i~~-l~~~~~ 329 (471)
|.++|++| |+.||+||+|.++++.|+.+.++..+.. -.++.|++.|-||+|+++|+.+++++.+ +++.++ ++++..
T Consensus 183 i~elc~kh-~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~ 261 (388)
T COG1168 183 IAELCLRH-GVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKR 261 (388)
T ss_pred HHHHHHHc-CCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHHHHHHHHHHHHH
Confidence 99999999 9999999999999999988888877653 2589999999999999999999998764 555444 445565
Q ss_pred cccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC-CCCCeeeCCCcceEEeEecCCccCCcccCCC
Q 012095 330 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFG 408 (471)
Q Consensus 330 ~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~ 408 (471)
....++|.++..|..++.+. .+.|++++++.++.+++++.+.|.+ +|++++..|+|.+.+|+++....
T Consensus 262 ~~~~~~n~lg~~A~~aAY~~---G~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~~p~gTYL~WLD~r~l~-------- 330 (388)
T COG1168 262 NGLHGPSALGIIATEAAYNQ---GEPWLDELLEYLKDNRDYVADFLNKHLPGVKVTEPQGTYLAWLDCRELG-------- 330 (388)
T ss_pred hcCCCCchHHHHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEecCCCceeeeeeccccC--------
Confidence 66778999999999999998 5899999999999999999999998 69999999999999999998752
Q ss_pred CCCCHHHHHHHHHHcCCEEEECCCCCCCC--CcEEEEeecCHHHHHHHHHHHHHHHHhh
Q 012095 409 KIENSESLCRYLLDKAQVALVPGDAFGDD--TCIRISYAASLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 409 ~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~--~~iRis~~~~~e~i~~~~~~l~~~l~~~ 465 (471)
.++.++.+.|+++.+|.+.+|..||.. +++|++++++.+.++++++||.++++..
T Consensus 331 --l~d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~acpr~~L~eal~ri~~al~~~ 387 (388)
T COG1168 331 --LDDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFACPRAILEEALERLKRALKKR 387 (388)
T ss_pred --CChHHHHHHHHHhhcEeccCCCccCcCCCceEEEecCCCHHHHHHHHHHHHHHHhcc
Confidence 266799999999999999999999964 7999999999999999999999998764
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-53 Score=426.70 Aligned_cols=367 Identities=17% Similarity=0.163 Sum_probs=291.0
Q ss_pred ccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCC-CCCChHHHHHHHHHHH----H-cCCCCCCCCCCCHHHHHHHHH
Q 012095 70 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP-DFDTPVLIAEAGINAI----R-EGFTRYTPNAGTLELRSAICH 143 (471)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~-~~~~p~~v~~a~~~~~----~-~~~~~Y~~~~G~~~lr~~ia~ 143 (471)
.++....+++++.+.+.+.. ..++++|+|+.|.| ++++|....+++.+++ . ....+|+|..|.++||+++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~ 83 (404)
T PTZ00376 6 SQVPLGPPDPILGLAAAFKA--DPSPSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQK 83 (404)
T ss_pred hcCCcCCCChHHHHHHHHhh--cCCcccEecccceeECCCCCEehhhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHH
Confidence 34555666666665554432 23457899999996 4666544455555543 2 234789999999999999999
Q ss_pred HHHHHhCCCCCCCcEE--EeCChHHHHHHHHH---HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCH
Q 012095 144 KLKEENGLSYTPDQIL--VSNGAKQSILQAVL---AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDP 218 (471)
Q Consensus 144 ~~~~~~g~~~~~~~i~--it~G~~~al~~~~~---~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~ 218 (471)
++.+..+..+++++|+ .|.|+++++..++. ++++|||+|++++|+|+.|...++.+|++++.+|+..+++|++|+
T Consensus 84 ~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~ 163 (404)
T PTZ00376 84 LLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDF 163 (404)
T ss_pred HhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCceeeccccCcccCCcCH
Confidence 9976666667889998 59999999987764 668999999999999999999999999999999996555688999
Q ss_pred HHHHhhhc---cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCC--CccccccCCCCCCc
Q 012095 219 KVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA--THTSFASLPGMWER 293 (471)
Q Consensus 219 e~l~~~l~---~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~ 293 (471)
+.+++++. ++++++++|+||||||.++|.+++++|+++|++| +++||+||+|.++.|++. ...++..+....++
T Consensus 164 ~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~ 242 (404)
T PTZ00376 164 DGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRK-NLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVE 242 (404)
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhC-CcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCc
Confidence 99999884 3456677899999999999999999999999999 999999999999988541 12233333333468
Q ss_pred eEEEecCCcccCccchhheee---EcCHHHHHHH----HHHHhcccCCCChHHHHHHHHHHhccCCCh---HHHHHHHHH
Q 012095 294 TLTVNGFSKAFAMTGWRLGYI---AGPKHFVAAC----NKIQSQFTSGASSISQKAGVAALGLGYAGG---EVVSKMVKA 363 (471)
Q Consensus 294 ~i~~~S~SK~~g~~G~R~G~v---~~~~~~i~~l----~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~---~~~~~~~~~ 363 (471)
+|+++||||.|+++|||+||+ ++++++++.+ .+.......+++.++|.++..+|+++...+ +++++++++
T Consensus 243 vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 322 (404)
T PTZ00376 243 FLVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGR 322 (404)
T ss_pred EEEEEeCCCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 5788765544 333334445678899999999997632112 336677789
Q ss_pred HHHHHHHHHHHhcCCC---CCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcE
Q 012095 364 FRERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 440 (471)
Q Consensus 364 ~~~~r~~l~~~L~~~~---g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~i 440 (471)
|+++|+.+.+.|+++. ++.+..|+||||+|++++ .+++++|++++||.+.||.
T Consensus 323 ~~~~r~~l~~~L~~~~~~~~~~~~~p~gg~f~~~~~~----------------~~~~~~L~~~~~v~v~p~~-------- 378 (404)
T PTZ00376 323 IQNMRQLLYDELKALGSPGDWEHIINQIGMFSFTGLT----------------KEQVERLIEKYHIYLLDNG-------- 378 (404)
T ss_pred HHHHHHHHHHHHHhcCCCCcccccccCceEEEecCCC----------------HHHHHHHHHhCCEeecCCC--------
Confidence 9999999999999862 355668999999998763 4789999999899999982
Q ss_pred EEEee-cCHHHHHHHHHHHHHHHH
Q 012095 441 RISYA-ASLTTLQAAVERIKKGLL 463 (471)
Q Consensus 441 Ris~~-~~~e~i~~~~~~l~~~l~ 463 (471)
|+|++ .+.+++++++++|++++.
T Consensus 379 Ris~~~~~~~~~~~~~~~l~~~~~ 402 (404)
T PTZ00376 379 RISVAGLTSKNVDYVAEAIHDVVR 402 (404)
T ss_pred eEEEeccCHHhHHHHHHHHHHHHh
Confidence 99998 488999999999999875
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-52 Score=426.46 Aligned_cols=361 Identities=22% Similarity=0.373 Sum_probs=301.5
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHH------------cCCCCCCCCCCCHHHHHHHHHHHHHHhCC--CCCCCcEEEe
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIR------------EGFTRYTPNAGTLELRSAICHKLKEENGL--SYTPDQILVS 161 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~------------~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~--~~~~~~i~it 161 (471)
.+|+|+..++.+- .+.+.+.+.+... .....|++..|.++||+++++++++.+|. ++++++|++|
T Consensus 48 g~i~l~~aeN~l~-~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit 126 (447)
T PLN02607 48 GVIQMGLAENQVS-FDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLT 126 (447)
T ss_pred ceEEEechhhhhh-HHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEc
Confidence 4899999998763 4455555544322 12245888899999999999999988773 5899999999
Q ss_pred CChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHH-HcCCEEEEecCCCCCCCcCCHHHHHhhhcc------CCcEEEE
Q 012095 162 NGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR-IADATPVILPTRISENFLLDPKVLESKLTE------KSRLLIL 234 (471)
Q Consensus 162 ~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~------~~~~i~i 234 (471)
+|+++++..++.++++|||.|+++.|+|+.|...+. ..|+++++|+++.+++|.+|++.+++++++ ++|+|++
T Consensus 127 ~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll 206 (447)
T PLN02607 127 AGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLI 206 (447)
T ss_pred CChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEE
Confidence 999999999999999999999999999999998777 479999999998777899999999998864 7889999
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCC------CCCCceEEEecCCcccCccc
Q 012095 235 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP------GMWERTLTVNGFSKAFAMTG 308 (471)
Q Consensus 235 ~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~------~~~~~~i~~~S~SK~~g~~G 308 (471)
+|||||||.++|++++++|+++|++| +++||+||+|..+.|++....++.++. ...+++++++||||.||++|
T Consensus 207 ~nP~NPtG~~~s~e~l~~l~~~~~~~-~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~G 285 (447)
T PLN02607 207 TNPSNPLGATVQRSVLEDILDFVVRK-NIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPG 285 (447)
T ss_pred eCCCCCcCcccCHHHHHHHHHHHHHC-CCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCc
Confidence 99999999999999999999999999 999999999999888765445554321 11478999999999999999
Q ss_pred hhheeeEc-CHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC
Q 012095 309 WRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (471)
Q Consensus 309 ~R~G~v~~-~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~ 387 (471)
+|+||+++ ++++++.+...... .++++++|.++..+|.+..+.+.++.+.+++++++++.+.+.|++. |+.+.+++
T Consensus 286 lRvG~ivs~n~~l~~~~~~~~~~--~~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~-gi~~~~~~ 362 (447)
T PLN02607 286 FRVGTIYSYNDKVVTTARRMSSF--TLVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRA-GIECLKGN 362 (447)
T ss_pred ceEEEEEEcCHHHHHHHHHHhhc--CCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcccCC
Confidence 99999998 67788877765432 2468889999999998754334678889999999999999999987 88888999
Q ss_pred cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeec-CHHHHHHHHHHHHHHHHh
Q 012095 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAA-SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 388 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~-~~e~i~~~~~~l~~~l~~ 464 (471)
+|+|+|+++++..... ......++.++|++++||.+.||..|+. ++|+||+|+. ++++++++++||.+++++
T Consensus 363 ag~fvw~~L~~~~~~~-----~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~~~~~~l~~gl~Ri~~~l~~ 437 (447)
T PLN02607 363 AGLFCWMNLSPLLETP-----TREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFANMSEDTLEVALKRIHRFMDR 437 (447)
T ss_pred eeEEEEEEchHhhcCC-----CchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHH
Confidence 9999999997542100 0013457888898878999999999975 6899999997 899999999999999986
Q ss_pred hC
Q 012095 465 LR 466 (471)
Q Consensus 465 ~~ 466 (471)
.+
T Consensus 438 ~~ 439 (447)
T PLN02607 438 RK 439 (447)
T ss_pred HH
Confidence 54
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=410.97 Aligned_cols=348 Identities=27% Similarity=0.357 Sum_probs=298.3
Q ss_pred CCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCC-CC
Q 012095 76 KPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLS-YT 154 (471)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~-~~ 154 (471)
++.+++.+.+.+.+.++.++++|+|+.|+|.+++++.+.+++.++.. ...|++..|.++||+++++++++.+|++ ++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~ 79 (357)
T TIGR03539 2 PDFPWDSLAPYKAKAASHPDGIVDLSVGTPVDPVPPLIRAALAAAAD--APGYPQTWGTPELREAIVDWLERRRGVPGLD 79 (357)
T ss_pred CcchHHHHHHHHHHhhhCCCCeEEccCCCCCCCCCHHHHHHHHHHHh--hCCCCcccCCHHHHHHHHHHHHHhcCCCCCC
Confidence 45567777777777777888999999999988888888888877643 4679888999999999999999988987 99
Q ss_pred CCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEE
Q 012095 155 PDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLI 233 (471)
Q Consensus 155 ~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~ 233 (471)
+++|++|+|+++++..++..+ +++||.|++++|+|+.|...++..|++++.++ +++.+. .+++++|+
T Consensus 80 ~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~---------~~~~l~---~~~~~~v~ 147 (357)
T TIGR03539 80 PTAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEVGALLAGATPVAAD---------DPTELD---PVGPDLIW 147 (357)
T ss_pred cCeEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHHHHHHHHhcCCEEeccC---------ChhhcC---ccCccEEE
Confidence 999999999999999988888 79999999999999999999999999988774 223332 24789999
Q ss_pred EcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCcccccc---CCCCCCceEEEecCCcccCccchh
Q 012095 234 LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS---LPGMWERTLTVNGFSKAFAMTGWR 310 (471)
Q Consensus 234 i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~---~~~~~~~~i~~~S~SK~~g~~G~R 310 (471)
+++|+||||.++|.+++++|+++|++| |++||+||+|.++.|++.. ..... .+...+++|+++||||.|+++|+|
T Consensus 148 ~~~p~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~~-~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R 225 (357)
T TIGR03539 148 LNSPGNPTGRVLSVDELRAIVAWARER-GAVVASDECYLELGWEGRP-VSILDPRVCGGDHTGLLAVHSLSKRSNLAGYR 225 (357)
T ss_pred EeCCCCCcCccCCHHHHHHHHHHHHHc-CeEEEEecchhhhccCCCC-ccceecccCCCccccEEEEeccccccCCCcee
Confidence 999999999999999999999999999 9999999999998876532 12111 122346899999999999999999
Q ss_pred heeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcce
Q 012095 311 LGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAF 390 (471)
Q Consensus 311 ~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~ 390 (471)
+||+++++++++.+.+.+.....+++.+.|.++.++|.+ ..+++..++.|+++++++.+.|.+. |+.+.+|++||
T Consensus 226 ~G~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~L~~~-g~~~~~p~~~~ 300 (357)
T TIGR03539 226 AGFVAGDPALVAELLTVRKHAGLMVPAPVQAAMVAALGD----DGHVAEQKARYAARRAQLKPALEKA-GFRIDHSEAGL 300 (357)
T ss_pred EEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHHHHHHHHc-CCCCcCCCccE
Confidence 999999999999998887766778999999999998864 6778889999999999999999987 88888899999
Q ss_pred EEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHH
Q 012095 391 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERI 458 (471)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l 458 (471)
|+|++++. +..++.+.|. ++||.+.||..|+. ++++||+++.+++++++++++|
T Consensus 301 ~~~~~~~~-------------~~~~~~~~l~-~~gV~v~pg~~f~~~~~~~iRis~~~~~~~i~~~~~~l 356 (357)
T TIGR03539 301 YLWATRGE-------------DAWDTVDRLA-ELGILVAPGDFYGPAGSQHVRVALTATDERIAAAVARL 356 (357)
T ss_pred EEEEECCC-------------CHHHHHHHHH-hCCEEECCccccCCCCCCeEEEEecCCHHHHHHHHHhh
Confidence 99998753 4567888765 45999999998874 4799999999889999999886
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-52 Score=418.97 Aligned_cols=364 Identities=16% Similarity=0.179 Sum_probs=289.6
Q ss_pred cccccCCChHHHHHHHHHHHHhcCCCeEEcCCCC---CCCCCh--HHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHH
Q 012095 71 RVNAVKPSKTVAITDQATALAQAGVSVIRLAAGE---PDFDTP--VLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHK 144 (471)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~---~~~~~p--~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~ 144 (471)
++...+++.+..+...+... ..+++|+|+.|. |++.+| +.+.+++.+++.+ ...+|++..|.++||++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~ 81 (396)
T PRK09257 4 HLEAAPADPILGLMEAFRAD--PRPDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQEL 81 (396)
T ss_pred cCCCCCCChHHHHHHHHhhC--CCcCcEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHH
Confidence 45566666666554444322 124689999996 444445 6788888887654 345799999999999999999
Q ss_pred HHHHhCCCCCCCcE--EEeCChHHHHHHHHHHh--cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHH
Q 012095 145 LKEENGLSYTPDQI--LVSNGAKQSILQAVLAV--CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKV 220 (471)
Q Consensus 145 ~~~~~g~~~~~~~i--~it~G~~~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~ 220 (471)
+.+..+..+++++| ++|+|+++++..+++++ ++|||+|++++|+|+.|..+++..|++++.+|+..+++|++|++.
T Consensus 82 ~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~ 161 (396)
T PRK09257 82 LFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDA 161 (396)
T ss_pred hcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCCcEEEEeccccccCccCHHH
Confidence 98766655688887 99999999999998766 589999999999999999999999999999998434458899999
Q ss_pred HHhhhcc---CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCC-CCccccccCCCCCCceEE
Q 012095 221 LESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP-ATHTSFASLPGMWERTLT 296 (471)
Q Consensus 221 l~~~l~~---~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~~~i~ 296 (471)
++++++. +++++++++||||||.++|.+++++|+++|++| +++||+||+|.++.++. ....++..+....+++|+
T Consensus 162 l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~ 240 (396)
T PRK09257 162 MLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKER-GLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLV 240 (396)
T ss_pred HHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhC-CcEEEEeccccccccchHHHHHHHHHHHhcCCcEEE
Confidence 9998752 345555699999999999999999999999999 99999999999988752 223444444444578999
Q ss_pred EecCCcccCccchhheeeEc---CHH----HHHHHHHHHhcccCCCChHHHHHHHHHHhccCC---ChHHHHHHHHHHHH
Q 012095 297 VNGFSKAFAMTGWRLGYIAG---PKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGYA---GGEVVSKMVKAFRE 366 (471)
Q Consensus 297 ~~S~SK~~g~~G~R~G~v~~---~~~----~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~---~~~~~~~~~~~~~~ 366 (471)
++||||.|+++|||+||+++ +++ +++.+.........+++.+.|.++..+|.++.. ..++++++++.|++
T Consensus 241 i~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~ 320 (396)
T PRK09257 241 ASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKA 320 (396)
T ss_pred EEEcCCcCccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999973 444 344444444444556789999999999976321 14678889999999
Q ss_pred HHHHHHHHhcCCC---CCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEE
Q 012095 367 RRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 443 (471)
Q Consensus 367 ~r~~l~~~L~~~~---g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis 443 (471)
+|+.+.+.|+++. ++.+..|+||||+|++++ .+++.+|++++||.+.|. + ||+
T Consensus 321 rr~~l~~~L~~~~~~~~~~~~~p~gg~~~w~~l~----------------~~~~~~l~~~~~V~~~p~------~--ri~ 376 (396)
T PRK09257 321 MRQLLVEALKAKGPSRDFDFIARQRGMFSYSGLT----------------PEQVDRLREEFGVYAVGS------G--RIN 376 (396)
T ss_pred HHHHHHHHHHhcCCCCCcccccccceEEEecCCC----------------HHHHHHHHHcCCEEEcCC------C--eEE
Confidence 9999999999862 377888999999999874 246677888889999883 2 999
Q ss_pred eec-CHHHHHHHHHHHHHH
Q 012095 444 YAA-SLTTLQAAVERIKKG 461 (471)
Q Consensus 444 ~~~-~~e~i~~~~~~l~~~ 461 (471)
|++ ++++|++++++|+++
T Consensus 377 ~~~~~~~~i~~~~~~i~~~ 395 (396)
T PRK09257 377 VAGLNESNIDYVAEAIAAV 395 (396)
T ss_pred EeeCCHHHHHHHHHHHHhh
Confidence 986 999999999999875
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-51 Score=419.02 Aligned_cols=358 Identities=23% Similarity=0.336 Sum_probs=281.0
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHH-HHHHHHhCCCCCC-C--cEEEeCChHHHHHHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAIC-HKLKEENGLSYTP-D--QILVSNGAKQSILQA 171 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia-~~~~~~~g~~~~~-~--~i~it~G~~~al~~~ 171 (471)
++|+|+.|+|++++++.+ .++.+++. +. +|+++.|..+++++++ +++.+.++....+ + +|++|+|+++++..+
T Consensus 95 ~~i~l~~g~p~~~~~~~~-~~~~~~~~-~~-~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~ 171 (521)
T TIGR03801 95 DIISYVIDQLGFDPDAFL-YEMCDGII-GD-NYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYI 171 (521)
T ss_pred HHHhhcCCCCCCCCCHHH-HHHHHHhh-cC-CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHH
Confidence 479999999999976555 55555543 22 6877788888888887 5666655433333 3 899999999999998
Q ss_pred HHH-----hcCCCCeEEEcCCCCCChHHHHHHc--CCEEEEecCCCCCC-----CcCCHHHHHhhhccCCcEEEEcCCCC
Q 012095 172 VLA-----VCSPGDEVIIPAPFWVSYPEMARIA--DATPVILPTRISEN-----FLLDPKVLESKLTEKSRLLILCSPSN 239 (471)
Q Consensus 172 ~~~-----l~~~gd~Vlv~~p~y~~~~~~~~~~--G~~~~~v~~~~~~~-----~~ld~e~l~~~l~~~~~~i~i~~p~N 239 (471)
+.+ +++|||+|++++|+|+.|...++.. |++++.++.+.+++ |.+|++++++++++++|+|+|+||||
T Consensus 172 ~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~~kai~l~nP~N 251 (521)
T TIGR03801 172 FDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPSIKALFVVNPSN 251 (521)
T ss_pred HHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcCCCCcEEEEeCCCC
Confidence 887 7899999999999999999998876 67888888765443 99999999999888999999999999
Q ss_pred CcccCCCHHHHHHHHHHHHhC-CCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCH
Q 012095 240 PTGSVYPKNLLDEIARIVAKH-PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 318 (471)
Q Consensus 240 PtG~~~~~~~l~~i~~l~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~ 318 (471)
|||.+++.+++++|+++|++| ++++||+||+|.+|.+. ..++... ..+++|+++||||.||++|||+||+++++
T Consensus 252 PTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~---~~sl~~~--~~~~vI~v~SfSK~fg~~G~RlG~i~~~~ 326 (521)
T TIGR03801 252 PPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDD---FRSLFAE--LPYNTIGVYSFSKYFGATGWRLGTIALHK 326 (521)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhccc---ccchhhh--CCCCEEEEEcchhhccCchhhhhhhhcCc
Confidence 999999999999999999974 48999999999998752 2344333 24689999999999999999999999976
Q ss_pred H-----HHHH--------H------------------------HHHHhcccCCCChHHHH-----HHHHHHhccCCChHH
Q 012095 319 H-----FVAA--------C------------------------NKIQSQFTSGASSISQK-----AGVAALGLGYAGGEV 356 (471)
Q Consensus 319 ~-----~i~~--------l------------------------~~~~~~~~~~~~~~~q~-----aa~~~L~~~~~~~~~ 356 (471)
+ +++. + +++....+.|++++.|. ++.++++. .+.+
T Consensus 327 ~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~~all~~---~~~y 403 (521)
T TIGR03801 327 DNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALMDK---ENAY 403 (521)
T ss_pred hHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcc---chhH
Confidence 4 2221 1 34555667778888887 34445553 4678
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCC-cccCCC----CCCCHHHHHHHHHHcCCEEEECC
Q 012095 357 VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGS-EAEGFG----KIENSESLCRYLLDKAQVALVPG 431 (471)
Q Consensus 357 ~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~-~~~~~~----~~~~~~~l~~~Ll~~~gV~v~pg 431 (471)
.+++++.+++|++.+.+.| .+ .+...+|+|+||+|++++..... ....+. ...++.+|+.+|++++||.+.||
T Consensus 404 ~~~~~~~~~~R~~~l~~~L-g~-~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~~L~~e~gV~v~PG 481 (521)
T TIGR03801 404 KAETKDICRRREKLLFRGL-GL-PLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLFRLAEETGIVLLPG 481 (521)
T ss_pred HHHHHHHHHHHHHHHHHhc-CC-CCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHHHHHHHHhCCEEEeCc
Confidence 9999999999999999998 22 23345789999999999852100 000000 00157899999999999999999
Q ss_pred CCCCCC-CcEEEEeec-CHHHHHHHHHHHHHHHHhhC
Q 012095 432 DAFGDD-TCIRISYAA-SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 432 ~~f~~~-~~iRis~~~-~~e~i~~~~~~l~~~l~~~~ 466 (471)
..|+.+ +++|+|++. +++++.++.++|+++++++.
T Consensus 482 ~~Fg~~~~~vRisla~l~~~~~~~~~~rl~~~~~~~~ 518 (521)
T TIGR03801 482 GGFGGPEWSVRVSLANLNEYDYAEIGRAIRKILDEYY 518 (521)
T ss_pred hhcCCCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 999864 689999996 88999999999999998754
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-50 Score=404.93 Aligned_cols=346 Identities=30% Similarity=0.490 Sum_probs=297.8
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHcC---CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHH
Q 012095 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQ 170 (471)
Q Consensus 94 g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~ 170 (471)
+.++++|+.|.|++++|+.+.+++.+.+... ..+|++..|.+++|+.+++++.+.++..+++++|++|+|+++++..
T Consensus 32 ~~~~~~l~~g~p~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~ 111 (394)
T PRK06836 32 ADNVFDFSLGNPSVPPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNV 111 (394)
T ss_pred CCCeEEecCcCCCCCCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHH
Confidence 3568999999999888889999998877642 5779899999999999999999988888899999999999999999
Q ss_pred HHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHH
Q 012095 171 AVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLL 250 (471)
Q Consensus 171 ~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l 250 (471)
++..++++||.|++++|+|..|...++..|++++.++++++ +|++|+++++++++++++++++++||||||.++|.+++
T Consensus 112 ~~~~l~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~ 190 (394)
T PRK06836 112 ALKAILNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTD-TFQPDLDALEAAITPKTKAVIINSPNNPTGVVYSEETL 190 (394)
T ss_pred HHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecCCc-cCcCCHHHHHhhcCcCceEEEEeCCCCCCCcCCCHHHH
Confidence 99999999999999999999999999999999999998754 47899999999998899999999999999999999999
Q ss_pred HHHHHHHHh------CCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHH-
Q 012095 251 DEIARIVAK------HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA- 323 (471)
Q Consensus 251 ~~i~~l~~~------~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~- 323 (471)
++|+++|++ | +++||+||+|.++.+++...+++.. ..+++++++||||.||++|+|+||+++++++.+.
T Consensus 191 ~~l~~la~~~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~---~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~~~~~ 266 (394)
T PRK06836 191 KALAALLEEKSKEYGR-PIYLISDEPYREIVYDGAEVPYIFK---YYDNSIVVYSFSKSLSLPGERIGYIAVNPEMEDAD 266 (394)
T ss_pred HHHHHHHHHhhhccCC-CeEEEEeccccccccCCCCCCChHH---ccCcEEEEecchhhccCcceeeEEEecCHHHhhhH
Confidence 999999999 8 9999999999999886543333322 2478999999999999999999999999876432
Q ss_pred -----HHHHHhcc-cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecC
Q 012095 324 -----CNKIQSQF-TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS 397 (471)
Q Consensus 324 -----l~~~~~~~-~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~ 397 (471)
+....... ..+++.+.|.++...+.+ . ..+..|+++++.+.+.|+++ |+.+..|++|||+|+++|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~----~~~~~~~~~r~~l~~~L~~~-g~~~~~~~gg~~~~~~~~ 337 (394)
T PRK06836 267 DLVAALVFANRILGFVNAPALMQRVVAKCLDA----T----VDVSIYKRNRDLLYDGLTEL-GFECVKPQGAFYLFPKSP 337 (394)
T ss_pred HHHHHHHHHhhccccccCCHHHHHHHHHHhCC----h----HHHHHHHHHHHHHHHHHHhC-CCEeecCCceEEEEEeCC
Confidence 11112211 235788899999888864 1 12567888999999999988 899899999999999987
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012095 398 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~~~~ 466 (471)
.. +..++++.|. ++||.+.||..|+.++++||+++.+++++++++++|+++++++.
T Consensus 338 ~~------------~~~~~~~~l~-~~gv~v~~g~~f~~~~~iRi~~~~~~~~~~~~i~~l~~~l~~~~ 393 (394)
T PRK06836 338 EE------------DDVAFCEKAK-KHNLLLVPGSGFGCPGYFRLSYCVDTETIERSLPAFEKLAKEYK 393 (394)
T ss_pred CC------------CHHHHHHHHH-hCCEEEECchhcCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhc
Confidence 52 6778887765 45999999999988899999999999999999999999998764
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-50 Score=403.51 Aligned_cols=337 Identities=24% Similarity=0.388 Sum_probs=285.9
Q ss_pred HHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCCh
Q 012095 85 DQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 164 (471)
Q Consensus 85 ~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~ 164 (471)
+.+......+.++|+|+.|++++++|+.+.+++.+.+.. ..+| |..|..+||+++++++ + +++++|++|+|+
T Consensus 20 ~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~-~~~Y-~~~~~~~lr~~ia~~~----~--~~~~~I~it~G~ 91 (357)
T PRK14809 20 EVARELGLDPDDLVKLSSNENPHGPSPAAVEAIREAAER-VHSY-PKASHADLTAALADRW----D--VSPEQVWLANGG 91 (357)
T ss_pred HHHHHhCCCccceeEecCCCCCCCCCHHHHHHHHHHHhh-hhcC-CCCCHHHHHHHHHHHh----C--CCcceEEECCCH
Confidence 344444445678999999999999998999998887653 5678 5678999999999987 3 688999999999
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccC
Q 012095 165 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 244 (471)
Q Consensus 165 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~ 244 (471)
++++..+++++++|||.|++++|+|..|...++..|++++.++++.+++|.++++.+++.. +++|+|+++|||||||.+
T Consensus 92 ~~al~~~~~~~~~~gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~k~i~l~~p~NPTG~~ 170 (357)
T PRK14809 92 DGALDYLARAMLDPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTADTVLDAY-DGERIVYLTSPHNPTGSE 170 (357)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhh-cCCcEEEEeCCCCCCCcC
Confidence 9999999999999999999999999999988999999999999976667888999888765 468999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHH
Q 012095 245 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC 324 (471)
Q Consensus 245 ~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l 324 (471)
+|.+++++|+++|++ +++||+||+|.++.+.+. ....+ ...+++++++||||.||++|+|+||+++++++++.+
T Consensus 171 ~s~~~~~~l~~~~~~--~~~iI~De~y~~~~~~~~---~~~~~-~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~ 244 (357)
T PRK14809 171 IPLDEVEALAERTDE--ETLVVVDEAYGEFAERPS---AVALV-EERDDVAVLRTFSKAYGLAGLRLGYAVVPEEWADAY 244 (357)
T ss_pred CCHHHHHHHHHhCcc--CcEEEEechhhhccCCch---hHHHH-hhCCCEEEEecchhHhcCcchhheeeecCHHHHHHH
Confidence 999999999999864 578999999999876431 11112 235789999999999999999999999999999999
Q ss_pred HHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcc
Q 012095 325 NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEA 404 (471)
Q Consensus 325 ~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~ 404 (471)
.+... ..+++.++|.++..+|.+ .+|+++.++.++++++.+.+.|... ++ |.+|+|+|++++
T Consensus 245 ~~~~~--~~~~~~~~~~~a~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~-~~----~~~g~f~~~~~~------- 306 (357)
T PRK14809 245 ARVNT--PFAASELACRAGLAALDD----DEHVERTVETARWAREYIREELDAP-TW----ESAGNFVLAEVG------- 306 (357)
T ss_pred HHhCC--CCCCCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHhcCc-cC----CCCCCEEEEECC-------
Confidence 88654 456889999999999874 7889999999999999999998753 22 567888999874
Q ss_pred cCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012095 405 EGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLL 463 (471)
Q Consensus 405 ~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~ 463 (471)
+..++++.|.+ +||.+.||+.|+.+++|||+++. .+++++++++|+++++
T Consensus 307 -------~~~~~~~~l~~-~gv~v~~g~~f~~~~~iRls~~~-~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 307 -------DASAVAEAAQE-RGVIVRDCTSFGLPECIRITCGT-REETERAVEVLNEVLA 356 (357)
T ss_pred -------CHHHHHHHHHH-CCEEEEECccCCCCCeEEEecCC-HHHHHHHHHHHHHHhc
Confidence 46788888754 59999999999888999999875 6899999999998875
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-50 Score=434.11 Aligned_cols=363 Identities=19% Similarity=0.248 Sum_probs=296.9
Q ss_pred cCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcEEEeCChHHHHHHH
Q 012095 93 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSILQA 171 (471)
Q Consensus 93 ~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~-~~i~it~G~~~al~~~ 171 (471)
+|+++|+|+.|+|++++|+.+++++.+++... .| ..|.+++++++++++++.+|+++++ ++|++|+|+++++..+
T Consensus 695 ~g~~vI~LsinE~d~ppPp~V~eAi~eal~~~--~~--s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~ll 770 (1082)
T PLN02672 695 QESSLIHMDVDESFLPVPSAVKASIFESFVRQ--NI--SESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKL 770 (1082)
T ss_pred CCCCEEEEeCCCCCCCCCHHHHHHHHHHHhhc--CC--CCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHH
Confidence 46789999999999999999999999877542 22 3467889999999999999988765 5999999999999999
Q ss_pred HHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc-CCcEEEEcCCC-CCcccCCCHHH
Q 012095 172 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPS-NPTGSVYPKNL 249 (471)
Q Consensus 172 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~-~~~~i~i~~p~-NPtG~~~~~~~ 249 (471)
++++++|||.|+++.|+|+.|...++..|++++.+|++.+++|.+|++.+++++++ +.++|+++||| ||||.+++.++
T Consensus 771 l~aLl~pGD~VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~ee 850 (1082)
T PLN02672 771 VLCCVQEGGTLCFPAGSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSE 850 (1082)
T ss_pred HHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccCCHHH
Confidence 99999999999999999999999999999999999998777899999999999876 45689999997 99999999999
Q ss_pred HHHHHHHHHhCCCeEEEEccCCCccccCCCCc--cccc----cCCCC--CCceEEEecCCcccCccchhheeeEcCH-HH
Q 012095 250 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATH--TSFA----SLPGM--WERTLTVNGFSKAFAMTGWRLGYIAGPK-HF 320 (471)
Q Consensus 250 l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~--~~~~----~~~~~--~~~~i~~~S~SK~~g~~G~R~G~v~~~~-~~ 320 (471)
+++|+++|++| +++||+||+|.++.|++... .++. .+... ..++++++||||.++++|||+||+++++ ++
T Consensus 851 Le~Llela~k~-di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~eL 929 (1082)
T PLN02672 851 IEEILSVCAKY-GARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDSVL 929 (1082)
T ss_pred HHHHHHHHHHc-CCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHheeEEeCCHHH
Confidence 99999999999 99999999999999875321 1111 11111 2479999999999999999999999965 58
Q ss_pred HHHHHHHHhcccCCCChHHHHHHHHHHh----ccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEec
Q 012095 321 VAACNKIQSQFTSGASSISQKAGVAALG----LGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF 396 (471)
Q Consensus 321 i~~l~~~~~~~~~~~~~~~q~aa~~~L~----~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~ 396 (471)
++.+.+..... ++....|.++.+++. ......+++.+.++.++++|+++.+.|++. |+.+.+|+||||+|+++
T Consensus 930 i~~l~~~~~~s--~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~-Gi~v~~PeGGFfLwl~l 1006 (1082)
T PLN02672 930 IDAFHSAPGLS--RPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEAC-GWDVLEPQGGISMVAKP 1006 (1082)
T ss_pred HHHHHHhhhhc--CCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCeEecCCcEEEEEEEc
Confidence 99888764322 234445555554442 111113567888889999999999999998 89999999999999987
Q ss_pred CCccCCc--ccCC----CCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012095 397 STYYGSE--AEGF----GKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLL 463 (471)
Q Consensus 397 ~~~~~~~--~~~~----~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~ 463 (471)
+...+.. .... ....++.+++++|++++||.+.||..|+.++|+||+++.+++++++++++|+++++
T Consensus 1007 ~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g~~RIsfa~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1007 SAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPGYCRFSFALEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred cccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 5332100 0000 00126789999999988999999999998999999999998999999999998764
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=412.20 Aligned_cols=365 Identities=16% Similarity=0.185 Sum_probs=279.3
Q ss_pred ccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCC-CCCCChHH----HHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHH
Q 012095 70 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGE-PDFDTPVL----IAEAGINAIREG-FTRYTPNAGTLELRSAICH 143 (471)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~-~~~~~p~~----v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~ 143 (471)
.++...+...+..+.+.++. ..+...|+|+.|. |+...++. +.++....+..+ ..+|++..|.++||+++++
T Consensus 25 ~~~~~~~~~~i~~~~~~~~~--~~~~~~l~l~~g~~p~~~~~p~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~LR~aia~ 102 (423)
T PLN02397 25 EHVEPAPPDPILGVTEAFLA--DPSPVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLLAGSRNKEYLPIEGLAEFNKLSAK 102 (423)
T ss_pred HcCCcCCCChHHHHHHHHhh--CCCcceEecccceeeCCCCCcccchHHHHHHHHhhccCCCCCCCCcCCCHHHHHHHHH
Confidence 44556666666665554432 2455689999996 66655443 444443333333 3479999999999999999
Q ss_pred HHHHHhCCCCCCCcE-----EEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCH
Q 012095 144 KLKEENGLSYTPDQI-----LVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDP 218 (471)
Q Consensus 144 ~~~~~~g~~~~~~~i-----~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~ 218 (471)
++.+.++..+.+++| +.++|+.+ +...+..++.|||+|++++|+|+.|...++..|++++.+|+..+++|++|+
T Consensus 103 ~~~~~~~~~~~~~~i~~~~i~~g~Ga~~-l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d~ 181 (423)
T PLN02397 103 LAYGADSPAIKENRVATVQCLSGTGSLR-LGAEFLARFYPGSTIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDF 181 (423)
T ss_pred HHcCCCCchhhcCeeEeeecccchHHHH-HHHHHHHHhCCCCEEEEeCCCchhHHHHHHHcCCeEEEeecccCcCCccCH
Confidence 996554433333443 33444443 444445556799999999999999999999999999999985444588999
Q ss_pred HHHHhhhc---cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCC--CccccccCCCCCCc
Q 012095 219 KVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA--THTSFASLPGMWER 293 (471)
Q Consensus 219 e~l~~~l~---~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~ 293 (471)
+.+++.+. ++++++++++||||||.+++.+++++|+++|++| +++||+||+|.+|.|++. ...++..+....++
T Consensus 182 ~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~-~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~ 260 (423)
T PLN02397 182 DGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSK-NHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHE 260 (423)
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhC-CcEEEEecccCCccCCchhhhhHHHHHHHhcCCc
Confidence 98888774 4677888899999999999999999999999999 999999999999998641 22333333333467
Q ss_pred eEEEecCCcccCccchhheeeE---cCHHHHH----HHHHHHhcccCCCChHHHHHHHHHHhccCCChHH---HHHHHHH
Q 012095 294 TLTVNGFSKAFAMTGWRLGYIA---GPKHFVA----ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEV---VSKMVKA 363 (471)
Q Consensus 294 ~i~~~S~SK~~g~~G~R~G~v~---~~~~~i~----~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~---~~~~~~~ 363 (471)
+|+++||||.|+|+|||+||++ .++++++ .+.+.......+++.+.|.++..+|..+.+.+.| ++++++.
T Consensus 261 vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~ 340 (423)
T PLN02397 261 ILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADR 340 (423)
T ss_pred EEEEEECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999984 3666544 4445555556678899999999989753211234 7788999
Q ss_pred HHHHHHHHHHHhcCCCC----CeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCc
Q 012095 364 FRERRDFLVKSFGELEG----VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTC 439 (471)
Q Consensus 364 ~~~~r~~l~~~L~~~~g----~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~ 439 (471)
|+++|+.+.+.|+++ | +.+..|+||||+|++++ .+++++|++++||++.++.
T Consensus 341 ~~~rr~~l~~~L~~~-~~~~~~~~~~p~gg~fl~~~l~----------------~~~~~~Ll~~~~V~v~~~~------- 396 (423)
T PLN02397 341 IISMRQKLYDALEAR-GSPGDWSHITKQIGMFSFTGLN----------------KEQVDRMTKEYHIYMTRDG------- 396 (423)
T ss_pred HHHHHHHHHHHHHhc-CCCCCCCcccCCceEEEecCCC----------------HHHHHHHHHhCCEEECCCC-------
Confidence 999999999999988 5 78788999999999763 3599999999999997532
Q ss_pred EEEEeec-CHHHHHHHHHHHHHHHH
Q 012095 440 IRISYAA-SLTTLQAAVERIKKGLL 463 (471)
Q Consensus 440 iRis~~~-~~e~i~~~~~~l~~~l~ 463 (471)
|++++. +.+++++++++|++++.
T Consensus 397 -Ri~~~~~~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 397 -RISMAGLSSKNVPYLADAIHAVVT 420 (423)
T ss_pred -eEEEeeCCHHHHHHHHHHHHHHHh
Confidence 999985 99999999999999985
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-50 Score=403.55 Aligned_cols=336 Identities=24% Similarity=0.362 Sum_probs=282.4
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcC--CCCCCCCCCCHHHHHHHHHHHHHHh--CCCCCCCcEEEeCChHHHHHHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREG--FTRYTPNAGTLELRSAICHKLKEEN--GLSYTPDQILVSNGAKQSILQA 171 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~~~~~~--g~~~~~~~i~it~G~~~al~~~ 171 (471)
.+++|+.|+|++++|+.+.+++.+++..+ ..+| |..|..+||++|++++++.+ |+.+++++|++|+|+++++..+
T Consensus 29 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y-~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~ 107 (374)
T PRK02610 29 QLDRLDTNEFPYDLPPDLKQKLAWLYQQGIESNRY-PDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSL 107 (374)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhcccccCC-CCCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHH
Confidence 48999999999999999999999887664 3568 56899999999999998776 5678999999999999999988
Q ss_pred HHHhcCCCC-eEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc----cCCcEEEEcCCCCCcccCCC
Q 012095 172 VLAVCSPGD-EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT----EKSRLLILCSPSNPTGSVYP 246 (471)
Q Consensus 172 ~~~l~~~gd-~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~----~~~~~i~i~~p~NPtG~~~~ 246 (471)
+.+++.+|| .|++++|+|..|...++..|++++.++++. ++|++|+++++++++ +++|+|++++||||||.+++
T Consensus 108 ~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~s 186 (374)
T PRK02610 108 LIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGRDP-ETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLT 186 (374)
T ss_pred HHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecCCc-ccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCCC
Confidence 888888886 899999999999999999999999999863 458899999999886 47999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHH
Q 012095 247 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 326 (471)
Q Consensus 247 ~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~ 326 (471)
.+++++|+++| + +++||+||+|.+|.+.. .+..+.. .+++|+++||||.||++|+|+||+++++++++.+.+
T Consensus 187 ~~~l~~l~~~~--~-~~~iI~De~Y~~~~~~~----~~~~~~~-~~~~ivi~SfSK~~g~~GlRiG~~v~~~~l~~~l~~ 258 (374)
T PRK02610 187 AAELEWLRSLP--E-DILVVIDEAYFEFSQTT----LVGELAQ-HPNWVILRTFSKAFRLAAHRVGYAIGHPELIAVLEK 258 (374)
T ss_pred HHHHHHHHhcc--C-CcEEEEeccccccCccc----hHHHHhc-CCCEEEEEecchhccCcccceeeeecCHHHHHHHHH
Confidence 99999999876 5 89999999999875421 1222222 467899999999999999999999999999999988
Q ss_pred HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccC
Q 012095 327 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEG 406 (471)
Q Consensus 327 ~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~ 406 (471)
.+.. ++.+.+.|.++..+|.+ .+.+.+.++..+++ |+.+.+.|++++|+.+ .|++|+|+|++++...
T Consensus 259 ~~~~--~~~~~~~q~a~~~~l~~---~~~~~~~~~~~~~~-r~~l~~~L~~~~~~~~-~p~~g~f~~~~l~~~~------ 325 (374)
T PRK02610 259 VRLP--YNLPSFSQLAAQLALEH---RQELLAAIPEILQE-RDRLYQALQELPQLRV-WPSAANFLYLRLSQDA------ 325 (374)
T ss_pred hcCC--CCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHH-HHHHHHHHHhCCCcEe-CCCcceEEEEeCCCCC------
Confidence 7643 45789999999998875 35666666666554 7778899988878875 4788999999997532
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012095 407 FGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 407 ~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~~~~ 466 (471)
++.++++.|.+ +||.+.++ ++++||+++.+ +++++++++|+++++.+.
T Consensus 326 -----~~~~~~~~l~~-~gi~v~~~-----~~~lRls~~~~-~~~~~~l~~l~~~l~~~~ 373 (374)
T PRK02610 326 -----ALAALHQALKA-QGTLVRHT-----GGGLRITIGTP-EENQRTLERLQAALTQLE 373 (374)
T ss_pred -----CHHHHHHHHHH-CCEEEEeC-----CCeEEEeCCCH-HHHHHHHHHHHHHHhhcC
Confidence 67888888755 59999864 46899999875 568999999999987654
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-50 Score=403.06 Aligned_cols=333 Identities=21% Similarity=0.338 Sum_probs=284.2
Q ss_pred cCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHH
Q 012095 93 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 172 (471)
Q Consensus 93 ~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~ 172 (471)
.+.++|+|+.|+|++++|+.+++++.+.+.+ ...| |..|..+||+++++++ | +++++|++|+|+++++..++
T Consensus 27 ~~~~~i~l~~nen~~~~~~~v~~a~~~~~~~-~~~Y-p~~g~~~Lr~aia~~~----~--~~~~~I~vt~Gs~e~i~~~~ 98 (366)
T PRK01533 27 GDHSFVKLASNENPFGCSPRVLDELQKSWLD-HALY-PDGGATTLRQTIANKL----H--VKMEQVLCGSGLDEVIQIIS 98 (366)
T ss_pred CCCceEEeCCCCCCCCCCHHHHHHHHHHHHh-cCcC-CCCCHHHHHHHHHHHh----C--CCcceEEECCCHHHHHHHHH
Confidence 3457999999999999999999999887654 3446 7889999999999997 3 58899999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHH
Q 012095 173 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 252 (471)
Q Consensus 173 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~ 252 (471)
++++++||.|++++|+|+.|...++..|++++.++++ ++.+|+++++++++++++++++|+||||||.+++.+++++
T Consensus 99 ~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~---~~~~d~~~l~~~~~~~~~~v~i~~P~NPTG~~~~~~~l~~ 175 (366)
T PRK01533 99 RAVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVALN---NGVYDLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQ 175 (366)
T ss_pred HHhcCCCCEEEEcCCcHHHHHHHHHHcCCEEEEeecC---CCCcCHHHHHHHhCcCCcEEEEeCCCCCCCCCcCHHHHHH
Confidence 9999999999999999999999999999999999984 3459999999999889999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhccc
Q 012095 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 332 (471)
Q Consensus 253 i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~ 332 (471)
|+++|+++ ++ +|+||+|.++.+.+. ..+........+++|+++||||.||++|+|+||+++++++++.+.+... .
T Consensus 176 l~~~~~~~-~~-~iiDe~y~~~~~~~~-~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~~~~~~~l~~~~~--~ 250 (366)
T PRK01533 176 FIEGISEN-TL-IVIDEAYYEYVTAKD-FPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHEELIEKLNVVRL--P 250 (366)
T ss_pred HHHhCCCC-CE-EEEEccHHHhhcccc-CcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCCHHHHHHHHHhcC--C
Confidence 99999887 65 666999998876532 1222222223579999999999999999999999999999999988764 4
Q ss_pred CCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCC
Q 012095 333 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 412 (471)
Q Consensus 333 ~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~ 412 (471)
++++.++|.++.++|.+ .+|.++.++.++++++++.+.++.+ |+++.+|+++ |+|++++ +
T Consensus 251 ~~~~~~~q~aa~~~l~~----~~~~~~~~~~~~~~r~~~~~~l~~~-g~~~~~~~~n-f~~~~~~--------------~ 310 (366)
T PRK01533 251 FNVSSLAQKAATIAFGD----DEFIEEIVRVNTEGLRQYESFCKEN-EIPFYQSQTN-FIFLPVE--------------N 310 (366)
T ss_pred CCcCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHhC-CCccCCCcCc-EEEEeCC--------------C
Confidence 57999999999999974 7888888999999999999999887 8888877655 6898885 3
Q ss_pred HHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhCCC
Q 012095 413 SESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRPG 468 (471)
Q Consensus 413 ~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~~ 468 (471)
..++.+.|++ +||.|++ | ++++||+++.. ++.+++++.|+++++..+.+
T Consensus 311 ~~~~~~~l~~-~GI~Vr~---~--~~~iRis~~~~-~~~~~l~~al~~~~~~~~~~ 359 (366)
T PRK01533 311 GGEIYEACAH-AGFIIRP---F--PNGVRITVGTR-EQNEGVISVLQQHFENKKRK 359 (366)
T ss_pred HHHHHHHHHH-CCcEEcc---C--CCceEEeCCCH-HHHHHHHHHHHHHHHhcccc
Confidence 5678888876 4999998 4 57999998876 67889999999888765543
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-50 Score=406.78 Aligned_cols=353 Identities=18% Similarity=0.316 Sum_probs=284.1
Q ss_pred CCeEEcCCCCCCCCC-h-HHHHHHHHHHHHcC-----CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHH
Q 012095 95 VSVIRLAAGEPDFDT-P-VLIAEAGINAIREG-----FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~-p-~~v~~a~~~~~~~~-----~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~a 167 (471)
+++|+|+.|+|+..+ | +.+.+++.+.+... ..+|++..|.++||++|++++++.+|+++++++|++|+|++++
T Consensus 30 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~a 109 (416)
T PRK09440 30 PGAIMLGGGNPAHIPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSA 109 (416)
T ss_pred CCceeccCCCCCccCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHHH
Confidence 568999999987544 3 45667777666432 2579999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC-----CCCeEEE-cCCCCCChHHHHHHcCC----EEEEecCCCCC-CCcCCHHHHHhhhccCCcEEEEcC
Q 012095 168 ILQAVLAVCS-----PGDEVII-PAPFWVSYPEMARIADA----TPVILPTRISE-NFLLDPKVLESKLTEKSRLLILCS 236 (471)
Q Consensus 168 l~~~~~~l~~-----~gd~Vlv-~~p~y~~~~~~~~~~G~----~~~~v~~~~~~-~~~ld~e~l~~~l~~~~~~i~i~~ 236 (471)
+..++.++++ +||.|++ ++|+|+.|...+...|. .+..+++..++ +|.+|++.++ +.+++++++++|
T Consensus 110 l~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~i~l~~ 187 (416)
T PRK09440 110 FFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--IDEDTGAICVSR 187 (416)
T ss_pred HHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--cCCCceEEEEec
Confidence 9999999985 6899999 79999999986654432 22233433221 4779999997 456789999999
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccC-CCCCCceEEEecCCcccCccchhheeeE
Q 012095 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIA 315 (471)
Q Consensus 237 p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~-~~~~~~~i~~~S~SK~~g~~G~R~G~v~ 315 (471)
||||||.+++.+++++|+++|++| +++||+||+|..+... ..+... +...+++|+++||||. +++|+|+||++
T Consensus 188 P~NPTG~~~s~~~~~~l~~~a~~~-~~~iI~De~Y~~~~~~----~~~~~~~~~~~~~vI~~~SfSK~-~~pGlRiG~~i 261 (416)
T PRK09440 188 PTNPTGNVLTDEELEKLDALARQH-NIPLLIDNAYGPPFPG----IIFSEATPLWNPNIILCMSLSKL-GLPGVRCGIVI 261 (416)
T ss_pred CCCCCCccCCHHHHHHHHHHHHHc-CCcEEEeCCccccCCC----cchhhcCccccCCeEEEeccccc-CCCcceEEEEe
Confidence 999999999999999999999999 9999999999754211 111111 1124789999999996 89999999999
Q ss_pred cCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHH-HHHHHHHHHHHHHHHhcCC-C--CCeeeCCCcceE
Q 012095 316 GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK-MVKAFRERRDFLVKSFGEL-E--GVKMSEPQGAFY 391 (471)
Q Consensus 316 ~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~-~~~~~~~~r~~l~~~L~~~-~--g~~~~~p~~g~~ 391 (471)
+++++++.+.........+++.+.|.++..+|.++.+ ..++.+ ++..|+++++.+.+.|.+. + ++.+..|+||+|
T Consensus 262 ~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p~gg~f 340 (416)
T PRK09440 262 ADEEIIEALSNMNGIISLAPGRLGPAIAAEMIESGDL-LRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLIHKPEGAIF 340 (416)
T ss_pred CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEEecCCCceE
Confidence 9999999999888877778999999999999987432 344444 6888999999998888763 3 356678999999
Q ss_pred EeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---------CCcEEEEeecCHHHHHHHHHHHHHHH
Q 012095 392 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---------DTCIRISYAASLTTLQAAVERIKKGL 462 (471)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~---------~~~iRis~~~~~e~i~~~~~~l~~~l 462 (471)
+|++++... .++.++.+.|. ++||.+.||+.|+. .+++||+++.+++++++++++|.+++
T Consensus 341 iw~~~~~~~----------~~~~~~~~~l~-~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~~~~~l~~~i~~l~~~~ 409 (416)
T PRK09440 341 LWLWFKDLP----------ITTEELYQRLK-ARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQDDEEIEKGIAILAEEV 409 (416)
T ss_pred EEEECCCCC----------CCHHHHHHHHH-HCCEEEechHhhCCCCccccCCcCceEEEEecCCHHHHHHHHHHHHHHH
Confidence 999998520 15678888765 46999999998853 25899999888899999999999999
Q ss_pred HhhCC
Q 012095 463 LTLRP 467 (471)
Q Consensus 463 ~~~~~ 467 (471)
++...
T Consensus 410 ~~~~~ 414 (416)
T PRK09440 410 EKAYA 414 (416)
T ss_pred HHHhh
Confidence 87654
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-51 Score=408.33 Aligned_cols=346 Identities=32% Similarity=0.541 Sum_probs=302.0
Q ss_pred CeEEcCCCCCCCC----ChHHHHHHHHH--HHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cEEEeCChHHHH
Q 012095 96 SVIRLAAGEPDFD----TPVLIAEAGIN--AIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSI 168 (471)
Q Consensus 96 ~~i~l~~g~~~~~----~p~~v~~a~~~--~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~i~it~G~~~al 168 (471)
++|+|+.|+++.. +++.+.+++.+ ........|++..|.++||+++++++.+..|++++++ +|++++|+.+++
T Consensus 2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~ 81 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQNPPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAAL 81 (363)
T ss_dssp TEEESSSSSTSSTTSSHHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHH
T ss_pred CEEEEECCCCCCcccccchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccccch
Confidence 5899999998887 45666666665 3334578999999999999999999998899989999 999999999999
Q ss_pred HHHHHHh-cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc------CCcEEEEcCCCCCc
Q 012095 169 LQAVLAV-CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPT 241 (471)
Q Consensus 169 ~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~------~~~~i~i~~p~NPt 241 (471)
..++..+ .++||.|++++|+|+.|...++..|++++.++++.+++|.+|+++|++.+++ +++++++++|||||
T Consensus 82 ~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPt 161 (363)
T PF00155_consen 82 FLLLRLLKINPGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPT 161 (363)
T ss_dssp HHHHHHHHSSTTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTT
T ss_pred hhhhhcccccccccceecCCccccccccccccCceeeeccccccccccccccccccccccccccccccceeeeccccccc
Confidence 9999999 8899999999999999999999999999999988778899999999999977 57899999999999
Q ss_pred ccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccc-cccCCCCCCceEEEecCCcccCccchhheeeEcCHHH
Q 012095 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS-FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 320 (471)
Q Consensus 242 G~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~ 320 (471)
|.+++.+++++|+++|++| +++||+||+|.++.++.....+ ...+.. ..++++++||||.||++|+|+||+++++++
T Consensus 162 G~~~~~~~l~~l~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~g~~GlRvG~i~~~~~~ 239 (363)
T PF00155_consen 162 GSVLSLEELRELAELAREY-NIIIIVDEAYSDLIFGDPDFGPIRSLLDE-DDNVIVVGSLSKSFGLPGLRVGYIVAPPEL 239 (363)
T ss_dssp TBB--HHHHHHHHHHHHHT-TSEEEEEETTTTGBSSSSHTHHHHGHHTT-TSTEEEEEESTTTTTSGGGTEEEEEEEHHH
T ss_pred ccccccccccchhhhhccc-ccceeeeeceeccccCCCccCcccccccc-cccceeeeeccccccccccccccccchhhh
Confidence 9999999999999999999 9999999999999887543222 222332 456999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCcc
Q 012095 321 VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYY 400 (471)
Q Consensus 321 i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~ 400 (471)
++.+.+....+.. +.+.|.++..++.+.....++++++++.++++++++.+.|++. |+.+.++.+|+|+|+.++..
T Consensus 240 ~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~- 315 (363)
T PF00155_consen 240 IERLRRFQRSGLS--SSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI-GITVLPPEAGFFLWVRLDPN- 315 (363)
T ss_dssp HHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSEEEHHSBSSEEEEEESHH-
T ss_pred hhhhhhccccccc--cchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh-hhheeeccCccEEEEEcccc-
Confidence 9999998876654 8888988888888632112389999999999999999999988 99999999999999998743
Q ss_pred CCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee-cCHHHHHHHHHHH
Q 012095 401 GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA-ASLTTLQAAVERI 458 (471)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~-~~~e~i~~~~~~l 458 (471)
++.+++++|++++||.+.||..|+.++++|++++ .+++++++++++|
T Consensus 316 -----------~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 316 -----------DAEELAQELLEEYGILVRPGSYFGVPGYIRISLASHSEEDLEEALERL 363 (363)
T ss_dssp -----------HHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEGGCSCHHHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEeccCCHHHHHHHHhhC
Confidence 5689999999888999999999999999999994 4999999999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=395.32 Aligned_cols=332 Identities=21% Similarity=0.387 Sum_probs=282.4
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHH
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~ 174 (471)
.++++|+.|+|+.++|+.+.+++.+.+.. ..+| |..+..+||+++++++ + +++++|++|+|+++++..++++
T Consensus 19 ~~~~~l~~~~~~~~~p~~~~~a~~~~~~~-~~~Y-~~~~~~~lr~~ia~~~----~--~~~~~i~it~Ga~~~l~~~~~~ 90 (354)
T PRK06358 19 NMILDFSANINPLGVPESLKQAITENLDK-LVEY-PDPDYLELRKRIASFE----Q--LDLENVILGNGATELIFNIVKV 90 (354)
T ss_pred cceEEecCCCCCCCCCHHHHHHHHHHHHh-hhcC-CCccHHHHHHHHHHHh----C--CChhhEEECCCHHHHHHHHHHH
Confidence 35799999999988899999999987653 5678 5567899999999997 3 6899999999999999999888
Q ss_pred hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHH
Q 012095 175 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 254 (471)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~ 254 (471)
+ .+ +.|++++|+|+.|...++..|++++.++++.+++|.+| +++.+.+.++++++++++||||||.+++.+++++|+
T Consensus 91 ~-~~-~~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~l~ 167 (354)
T PRK06358 91 T-KP-KKVLILAPTFAEYERALKAFDAEIEYAELTEETNFAAN-EIVLEEIKEEIDLVFLCNPNNPTGQLISKEEMKKIL 167 (354)
T ss_pred h-CC-CcEEEecCChHHHHHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhccCCCEEEEeCCCCCCCCccCHHHHHHHH
Confidence 6 44 68999999999999999999999999999877778899 666666777899999999999999999999999999
Q ss_pred HHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcC-HHHHHHHHHHHhcccC
Q 012095 255 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFTS 333 (471)
Q Consensus 255 ~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~-~~~i~~l~~~~~~~~~ 333 (471)
++|++| +++||+||+|.++.+++.....+..++ ..+++|+++||||.||++|+|+||++++ +++++.+.+... .+
T Consensus 168 ~~a~~~-~~~ii~De~Y~~~~~~~~~~~~~~~~~-~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~~~~~~~~~--~~ 243 (354)
T PRK06358 168 DKCEKR-NIYLIIDEAFMDFLEENETISMINYLE-NFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQMRE--PW 243 (354)
T ss_pred HHHHhc-CCEEEEeCcccccCCCccchhHHHhcc-CCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhCC--CC
Confidence 999999 999999999999988764322222333 3579999999999999999999999985 788898888765 35
Q ss_pred CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCH
Q 012095 334 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 413 (471)
Q Consensus 334 ~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~ 413 (471)
+.+.++|.++..+|++ ..++++.++.++++++.+.+.|++++|+.+.+|+|+ |+|++++ +.
T Consensus 244 ~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g~-f~~~~~~--------------~~ 304 (354)
T PRK06358 244 SINTFADLAGQTLLDD----KEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYKPSVN-FIFFKLE--------------KP 304 (354)
T ss_pred cchHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCCcce-EEEEEcC--------------ch
Confidence 6899999999999964 678899999999999999999999888888888766 6899886 34
Q ss_pred HHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHH
Q 012095 414 ESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGL 462 (471)
Q Consensus 414 ~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~l 462 (471)
.++++.|+++ ||.+.||+.|+. ++|+||+++.+ ++.+++++.|++++
T Consensus 305 ~~~~~~l~~~-gI~v~~~~~f~~~~~~~iRls~~~~-~~~~~l~~~l~~~~ 353 (354)
T PRK06358 305 IDLRKELLKK-GILIRSCSNYRGLDENYYRVAVKSR-EDNKKLLKALEVIL 353 (354)
T ss_pred HHHHHHHHHC-CeEEEECCCCCCCCCCEEEEEeCCH-HHHHHHHHHHHHHh
Confidence 6899988875 999999999953 47999998875 56677777777654
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-49 Score=394.88 Aligned_cols=353 Identities=23% Similarity=0.292 Sum_probs=283.3
Q ss_pred ccccccccCCC-hHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHH
Q 012095 68 LSPRVNAVKPS-KTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLK 146 (471)
Q Consensus 68 ~s~~~~~~~~~-~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~ 146 (471)
+...+..+.++ +...+...++++...+.++|+|+.|+|++++|+.+.+++.+.. ....| |..+..+||++++++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~n~~p~~~~~~v~~a~~~~~--~~~~Y-p~~~~~~lr~~ia~~~~ 100 (380)
T PLN03026 24 IRKHILQLAPYQPILPFEVLSAQLGRKPEDIVKLDANENPYGPPPEVLEALGNMK--FPYVY-PDPESRRLRAALAEDSG 100 (380)
T ss_pred hhHHhhcCCCCCCCCChHHHHHHhCCCccceEEccCCCCCCCCCHHHHHHHHhhH--hhccC-CCCCHHHHHHHHHHHhC
Confidence 33444454443 2222333344443345689999999999999888888876531 23457 56688999999999973
Q ss_pred HHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhh-
Q 012095 147 EENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL- 225 (471)
Q Consensus 147 ~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l- 225 (471)
+++++|++|+|+++++..++.+++++||+|++++|+|+.|...++..|++++.++++ ++|.+|++++++++
T Consensus 101 ------~~~~~I~~t~Ga~~~i~~~~~~~~~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~~ 172 (380)
T PLN03026 101 ------LESENILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRT--PDFSLDVPRIVEAVE 172 (380)
T ss_pred ------cChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecC--CCCCcCHHHHHHHHh
Confidence 578999999999999999999999999999999999999999999999999999985 45789999999998
Q ss_pred ccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccC
Q 012095 226 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305 (471)
Q Consensus 226 ~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 305 (471)
++++++|++++||||||.+++.+++++|++. .++||+||+|.+|.+.+. ........+++|+++||||.||
T Consensus 173 ~~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~-----~~~vi~DeaY~~~~~~~~----~~~~~~~~~~viv~~SfSK~~g 243 (380)
T PLN03026 173 THKPKLLFLTSPNNPDGSIISDDDLLKILEL-----PILVVLDEAYIEFSTQES----RMKWVKKYDNLIVLRTFSKRAG 243 (380)
T ss_pred ccCCcEEEEeCCCCCCCCCCCHHHHHHHHhc-----CCEEEEECcchhhcCCcc----hHHHHHhCCCEEEEecchHhhc
Confidence 7789999999999999999997777777653 279999999999876432 1111123589999999999999
Q ss_pred ccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC
Q 012095 306 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385 (471)
Q Consensus 306 ~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~ 385 (471)
++|+|+||+++++++++.+.+.+.. ++.+.++|.++.++|.+ .+++++.++.++++|+++.+.|++++++.+ .
T Consensus 244 laGlRiGy~~~~~~~i~~l~~~~~~--~~~~~~~q~aa~~aL~~----~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~ 316 (380)
T PLN03026 244 LAGLRVGYGAFPLSIIEYLWRAKQP--YNVSVAAEVAACAALSN----PKYLEDVKNALVEERERLFGLLKEVPFLEP-Y 316 (380)
T ss_pred CccccceeeecCHHHHHHHHHhcCC--CCCCHHHHHHHHHHhhC----HHHHHHHHHHHHHHHHHHHHHHHHCCCCeE-C
Confidence 9999999999999999999887754 45889999999999974 678999999999999999999998854554 5
Q ss_pred CCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHH
Q 012095 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 460 (471)
Q Consensus 386 p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~ 460 (471)
|.+++|+|++++.. .++.+++++|++ +||.+.+|..++.++++|||++.+ ++++.+++.|++
T Consensus 317 p~~~~f~~~~~~~~-----------~~~~~~~~~l~~-~gI~v~~~~~~~~~~~lRis~~~~-~~~~~l~~al~~ 378 (380)
T PLN03026 317 PSDANFILCRVTSG-----------RDAKKLKEDLAK-MGVMVRHYNSKELKGYIRVSVGKP-EHTDALMEALKQ 378 (380)
T ss_pred CCCCeEEEEECCCC-----------CCHHHHHHHHHH-CCeEEEECCCCCCCCEEEEecCCH-HHHHHHHHHHHH
Confidence 77888999998742 167889998885 599999987766678999999963 456666666554
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-49 Score=393.58 Aligned_cols=330 Identities=23% Similarity=0.335 Sum_probs=284.1
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHH
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~ 174 (471)
.++|+|+.|+|++++++.+.+++.+.+.. ..|.|..|..+||+++++++ + +++++|++|+|+++++..++++
T Consensus 29 ~~~i~l~~n~~~~~~~~~v~~a~~~~~~~--~~~~p~~g~~~lr~~ia~~~----~--~~~~~i~~t~G~~~~l~~~~~~ 100 (359)
T PRK03158 29 EKIVKLASNENPYGPSPKVKEAIAAHLDE--LALYPDGYAPELRTKVAKHL----G--VDEEQLLFGAGLDEVIQMISRA 100 (359)
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHHH--hhcCCCCcHHHHHHHHHHHh----C--CCHHHEEECCCHHHHHHHHHHH
Confidence 37899999999998888899999887754 45668889999999999997 3 5789999999999999999999
Q ss_pred hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHH
Q 012095 175 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 254 (471)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~ 254 (471)
++++||.|++++|+|+.|...+...|++++.+|++ ++.+|++.+++.++++++++++++||||||.+++.+++.+++
T Consensus 101 ~~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~---~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~~~ 177 (359)
T PRK03158 101 LLNPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK---DGGHDLEAMLKAIDEQTKIVWICNPNNPTGTYVNHEELLSFL 177 (359)
T ss_pred HhCCCCEEEEcCCCHHHHHHHHHHcCCeEEEEecC---CCCcCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999986 356899999999888999999999999999999999988888
Q ss_pred HHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCC
Q 012095 255 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 334 (471)
Q Consensus 255 ~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~ 334 (471)
+.|+ + +++||+||+|.++.+++.....+..+ ...+++++++||||.||++|+|+||+++++++++.+.+.... ++
T Consensus 178 ~~~~-~-~~~ii~De~y~~~~~~~~~~~~~~~~-~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~~~--~~ 252 (359)
T PRK03158 178 ESVP-S-HVLVVLDEAYYEYVTAEDYPDTLPLL-EKYENLIVLRTFSKAYGLAALRVGYGIASEELIEKLNIARPP--FN 252 (359)
T ss_pred HhCC-C-CcEEEEECchHhhcCCcccccHHHHH-HhcCCEEEEEechHhhcCcchhhehhcCCHHHHHHHHHhcCC--CC
Confidence 8774 6 89999999999988764322222222 235789999999999999999999999999999999887653 56
Q ss_pred CChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHH
Q 012095 335 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSE 414 (471)
Q Consensus 335 ~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (471)
++.++|.++.++|.+ .+|+++.++.++++++.+.+.|.+. |+.+.+ .+|+|+|++++. ++.
T Consensus 253 ~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~-~~g~~i~~~~~~-------------~~~ 313 (359)
T PRK03158 253 TTRIAQYAAIAALED----QAFLKECVEKNAEGLEQYYAFCKEY-GLFYYP-SQTNFIFVDTGR-------------DAN 313 (359)
T ss_pred CCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHC-CCeeCC-CcCcEEEEECCC-------------CHH
Confidence 899999999999974 6788888999999999999999888 887764 456789998852 577
Q ss_pred HHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHH
Q 012095 415 SLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKG 461 (471)
Q Consensus 415 ~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~ 461 (471)
++++.|+++ ||.+.||..|+.++++||+++ +.+++++++++|+++
T Consensus 314 ~~~~~l~~~-gv~v~~g~~f~~~~~iRi~~~-~~~~~~~l~~al~~~ 358 (359)
T PRK03158 314 ELFEALLKK-GYIVRSGAALGFPTGVRITIG-LKEQNDKIIELLKEL 358 (359)
T ss_pred HHHHHHHHC-CeEEeeCCCCCCCCeEEEecC-CHHHHHHHHHHHHHh
Confidence 899998865 999999999988899999988 457888888888775
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=387.55 Aligned_cols=339 Identities=20% Similarity=0.269 Sum_probs=279.6
Q ss_pred HHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHH
Q 012095 88 TALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (471)
Q Consensus 88 ~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~a 167 (471)
.++..++.++|+|+.|+|++++|+.+.+++.+.+.. ...| |..+..+||+++++++ + +++++|++|+|++++
T Consensus 13 ~~~~~~~~~~i~l~~~~~~~~~p~~~~~a~~~~~~~-~~~y-~~~~~~~lr~~ia~~~----~--~~~~~i~it~Ga~~~ 84 (356)
T PRK08056 13 TVLGISPDQLLDFSANINPLGMPVSLKRAIIDNLDC-AERY-PDVEYRHLHQALARHH----Q--VPASWILAGNGETES 84 (356)
T ss_pred HHhCCChhhEEEeccccCCCCCCHHHHHHHHHHHHh-cccC-cCccHHHHHHHHHHHh----C--cChhhEEECCCHHHH
Confidence 334344667999999999999999999999887654 4568 4567899999999996 3 578999999999999
Q ss_pred HHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCH
Q 012095 168 ILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247 (471)
Q Consensus 168 l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~ 247 (471)
+..+++++ .+|| |++++|+|..|...++..|++++.+|++.+++|.+| +++++.+.+++|+|+++|||||||.+++.
T Consensus 85 l~~~~~~l-~~g~-viv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~~~~k~v~l~~p~NPTG~~~~~ 161 (356)
T PRK08056 85 IFAVVSGL-KPRR-AMIVTPGFAEYRRALQQVGCEIRRYSLREADGWQLT-DAILEALTPDLDCLFLCTPNNPTGLLPER 161 (356)
T ss_pred HHHHHHHh-CCCC-EEEeCCCcHHHHHHHHHcCCeEEEEecccccCCCcc-HHHHHhccCCCCEEEEeCCcCCCCCCCCH
Confidence 99988876 6776 677899999999999999999999999876777777 45556677889999999999999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEc-CHHHHHHHHH
Q 012095 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNK 326 (471)
Q Consensus 248 ~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~-~~~~i~~l~~ 326 (471)
+++++|+++|++| +++||+||+|.++.+++....+. +. ..+++++++||||.||++|+|+||+++ ++++++.+.+
T Consensus 162 ~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~--~~-~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~~~l~~ 237 (356)
T PRK08056 162 QLLQAIAERCKSL-NIALILDEAFIDFIPDETGFIPQ--LA-DNPHLWVLRSLTKFYAIPGLRLGYLVNSDDAAVARMRR 237 (356)
T ss_pred HHHHHHHHHHHhc-CCEEEEecchhccCCcchHHHHH--hc-cCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHH
Confidence 9999999999999 99999999999987754322222 22 246899999999999999999999998 4678888876
Q ss_pred HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccC
Q 012095 327 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEG 406 (471)
Q Consensus 327 ~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~ 406 (471)
... ..+++.++|.++..+|.. ..|.++.++.++++|+.+.+.|++++|+.+.++ +++|+|++++.
T Consensus 238 ~~~--~~~~~~~~~~~a~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~-------- 302 (356)
T PRK08056 238 QQM--PWSINAFAALAGEVILQD----RAYQQATWQWLAEEGARFYQALCALPLLTVWPG-RANYLFLRCER-------- 302 (356)
T ss_pred hCC--CCchhHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCC-CCcEEEEEcCC--------
Confidence 543 345788899988888863 688889999999999999999998888877655 57889999873
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012095 407 FGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLL 463 (471)
Q Consensus 407 ~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~l~ 463 (471)
+..++++.|++ +||.+.+|..|.. ++||||+++. .++.+.+++.|+++++
T Consensus 303 -----~~~~~~~~l~~-~gI~v~~~~~f~~~~~~~iRis~~~-~~~~~~l~~~l~~~~~ 354 (356)
T PRK08056 303 -----PDIDLQRALLT-QRILIRSCANYPGLDSRYYRVAIRS-AAENERLLAALRNVLT 354 (356)
T ss_pred -----ChHHHHHHHHH-CCeEEEECCCCCCCCCCEEEEEEcC-HHHHHHHHHHHHHHHc
Confidence 45689998886 4999999998843 3699999986 4666777777776653
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-48 Score=387.02 Aligned_cols=328 Identities=20% Similarity=0.300 Sum_probs=270.8
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHH
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~ 174 (471)
.++|+|+.|++++++|+.+.+++.+++.. ..+|++ .+..+||++|++++ + +++++|++|+|++++|..++++
T Consensus 22 ~~~i~l~~~~n~~~~~~~~~~a~~~~~~~-~~~Y~~-~~~~~Lr~aia~~~----~--v~~~~I~it~G~~~~i~~~~~~ 93 (360)
T PRK07392 22 DAILDFSASINPLGPPESVIAAIQSALSA-LRHYPD-PDYRELRLALAQHH----Q--LPPEWILPGNGAAELLTWAGRE 93 (360)
T ss_pred ccEEEeCCcCCCCCCCHHHHHHHHHHHHH-hhcCCC-cCHHHHHHHHHHHh----C--cChhhEEECCCHHHHHHHHHHH
Confidence 36899999999999999999998887764 677965 45689999999997 3 6889999999999999999888
Q ss_pred hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCC---cCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHH
Q 012095 175 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENF---LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 251 (471)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~---~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~ 251 (471)
+. +||.|++++|+|..|...++..|++++.++++.++++ ..+++.+++.. +++++++++|||||||.+++++
T Consensus 94 l~-~g~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~nP~NPTG~~~~~~--- 168 (360)
T PRK07392 94 LA-QLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL-TPNDGLLLNNPHNPTGKLWSRE--- 168 (360)
T ss_pred hC-CCCeEEEECCCcHHHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhc-cCCCEEEEeCCCCCCCCCcCHH---
Confidence 65 7899999999999999999999999999999866554 35677776653 4688999999999999999955
Q ss_pred HHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcc
Q 012095 252 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 331 (471)
Q Consensus 252 ~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~ 331 (471)
+|.++++++ ++ +|+||+|.++.+++. ..++.......+++|+++||||.||++|+|+||+++++++++.+.+...
T Consensus 169 ~l~~l~~~~-~~-~IiDE~y~~~~~~~~-~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~~~~~~~~~~~~-- 243 (360)
T PRK07392 169 AILPLLEQF-AL-VVVDEAFMDFLPPDA-EQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHPDRLQRWQQWRD-- 243 (360)
T ss_pred HHHHHHHHC-CE-EEEECchhhhccCcc-ccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCHHHHHHHHhhCC--
Confidence 456667788 76 555999999987653 2333322233578999999999999999999999999999999877653
Q ss_pred cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCC
Q 012095 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 411 (471)
Q Consensus 332 ~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~ 411 (471)
..+++.++|.++.++|++ ..+.+..++.++++|+.+.+.|++++|+.+. |.+++|+|++++.
T Consensus 244 ~~~~s~~~q~~~~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~~~fl~~~~~~------------- 305 (360)
T PRK07392 244 PWPVNGLAAAAAIAALAD----RDFQQQTWAWLPPAREALFQGLASLPGLTPL-PSAANFLLVQSQG------------- 305 (360)
T ss_pred CCCCCHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCCEEEEEcCC-------------
Confidence 356899999999999974 5778888888999999999999988888875 5778999998863
Q ss_pred CHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCH--HHHHHHHHHH
Q 012095 412 NSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASL--TTLQAAVERI 458 (471)
Q Consensus 412 ~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~--e~i~~~~~~l 458 (471)
++.++++.+++++||.+.||..|+. ++||||+++.++ +.+.++++++
T Consensus 306 ~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~~~l~~al~~~ 356 (360)
T PRK07392 306 SALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRTEAENQRLLEALAAI 356 (360)
T ss_pred CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 5678998888778999999999974 479999999843 4666666654
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-48 Score=387.27 Aligned_cols=334 Identities=26% Similarity=0.377 Sum_probs=281.6
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHc---CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 172 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~---~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~ 172 (471)
..|+|+.|+|++++|+.+.+++.+++.. ....| |..|.++||+++++++++.+|+++++++|++|+|+++++..++
T Consensus 27 ~~i~l~~~~~~~~~~~~~~~al~~~l~~~~~~~~~Y-~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~ 105 (368)
T PRK03317 27 VPVRLNTNENPYPPSPALVADIAEAVAEAAAGLNRY-PDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLL 105 (368)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhhhhhhccC-CCCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHH
Confidence 4699999999999999999999988753 34678 6679999999999999999998899999999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc-cCCcEEEEcCCCCCcccCCCHHHHH
Q 012095 173 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLD 251 (471)
Q Consensus 173 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~-~~~~~i~i~~p~NPtG~~~~~~~l~ 251 (471)
+++++|||.|+++.|+|+.|...++..|.+++.++.+ ++|++|++++++++. +++++|++++||||||.+++.++++
T Consensus 106 ~~~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~ 183 (368)
T PRK03317 106 QAFGGPGRTALGFVPSYSMHPIIARGTHTEWVEGPRA--ADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPLDDVE 183 (368)
T ss_pred HHhcCCCCEEEEeCCChHHHHHHHHhcCCeeEEcccC--CCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHH
Confidence 9999999999999999999999999999999888764 467899999999986 4789999999999999999977777
Q ss_pred HHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcc
Q 012095 252 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 331 (471)
Q Consensus 252 ~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~ 331 (471)
+|+++| +++||+||+|.++.+++. .+...+....+++++++||||.||++|+|+||+++++++++.+.....
T Consensus 184 ~l~~~~----~~~lI~DE~y~~~~~~~~--~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~~~~~~~l~~~~~-- 255 (368)
T PRK03317 184 AILDAA----PGIVVVDEAYAEFRRSGT--PSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAAPAVVDALRLVRL-- 255 (368)
T ss_pred HHHHHC----CceEEEeCCchhhcccCC--cCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCCHHHHHHHHhcCC--
Confidence 666555 589999999999876542 222232222468999999999999999999999999999999987653
Q ss_pred cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCC
Q 012095 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 411 (471)
Q Consensus 332 ~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~ 411 (471)
.++.++++|.++.++|+. .+++.+.++.++++++.+.+.|++. |+.+..|+++|++|.+++
T Consensus 256 ~~~~s~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~-------------- 316 (368)
T PRK03317 256 PYHLSAVTQAAARAALRH----ADELLASVAALRAERDRVVAWLREL-GLRVAPSDANFVLFGRFA-------------- 316 (368)
T ss_pred CCCCCHHHHHHHHHHhhC----HHHHHHHHHHHHHHHHHHHHHHHHC-CCEeCCCCCcEEEEeccC--------------
Confidence 456889999999999975 3444556677899999999999987 888888999998886653
Q ss_pred CHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012095 412 NSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 412 ~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~~ 464 (471)
+..++.+.|+++ ||.+.++ +.++++||+++. .++++++++.|++++..
T Consensus 317 ~~~~~~~~l~~~-Gv~v~~~---~~~~~iRi~~~~-~~~~~~~~~~l~~~~~~ 364 (368)
T PRK03317 317 DRHAVWQGLLDR-GVLIRDV---GIPGWLRVTIGT-PEENDAFLAALAEVLAT 364 (368)
T ss_pred CHHHHHHHHHHC-CEEEEeC---CCCCeEEEecCC-HHHHHHHHHHHHHHHHH
Confidence 467888887765 9999874 446899999974 57889999999888753
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-47 Score=381.61 Aligned_cols=366 Identities=27% Similarity=0.417 Sum_probs=303.1
Q ss_pred ccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHHHhCCC
Q 012095 74 AVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLS 152 (471)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~g~~ 152 (471)
.+++..+..+....... .++.++|+|+.|++.+++++.+.+++.+++..+ ...|++..|..+||+++++++ |
T Consensus 8 ~~~~~~~~~~~~~~~~~-~~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l----~-- 80 (380)
T PRK06225 8 KVPPSGFKTSNEFFDYV-FKDKEMIWMGQNTNHLGPHEEVREAMIRCIEEGEYCKYPPPEGFPELRELILKDL----G-- 80 (380)
T ss_pred ccCcchhhhHHHHHHHH-hhcCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhc----C--
Confidence 34444444444433333 234579999999999999999999999988753 467888889999999999986 3
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCC-CCCCcCCHHHHHhhhccCCcE
Q 012095 153 YTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI-SENFLLDPKVLESKLTEKSRL 231 (471)
Q Consensus 153 ~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~ld~e~l~~~l~~~~~~ 231 (471)
+++++|++|+|+++++..++++++.+||+|++++|+|..+...++..|++++.++++. +++|.+|++.+++.+++++++
T Consensus 81 ~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~ 160 (380)
T PRK06225 81 LDDDEALITAGATESLYLVMRAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDENTRL 160 (380)
T ss_pred CCCCcEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcCCCceE
Confidence 4778999999999999999999999999999999999999999999999999999753 346889999999999989999
Q ss_pred EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhh
Q 012095 232 LILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRL 311 (471)
Q Consensus 232 i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~ 311 (471)
+++++|+||||.+++.+++++|+++|++| +++||+||+|.++..+. .....+. .++++++.||||.+|++|+|+
T Consensus 161 v~l~~p~NptG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~---~~~~~~~--~~~~i~~~s~SK~~g~~G~Ri 234 (380)
T PRK06225 161 IYLIDPLNPLGSSYTEEEIKEFAEIARDN-DAFLLHDCTYRDFAREH---TLAAEYA--PEHTVTSYSFSKIFGMAGLRI 234 (380)
T ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHHC-CcEEEEehhHHHHhccC---CchhhcC--CCCEEEEeechhhcCCcccee
Confidence 99999999999999999999999999999 99999999998765321 2222222 478999999999999999999
Q ss_pred eeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCee-eCCCcce
Q 012095 312 GYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-SEPQGAF 390 (471)
Q Consensus 312 G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~-~~p~~g~ 390 (471)
||+++++++++.+..... ...+.+.++|.++..+|.. ...|+++.++.++++++.+.+.|++++|+.+ ..|.+|+
T Consensus 235 G~i~~~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~ 310 (380)
T PRK06225 235 GAVVATPDLIEVVKSIVI-NDLGTNVIAQEAAIAGLKV---KDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGN 310 (380)
T ss_pred EEEecCHHHHHHHHHHHh-cccCCCHHHHHHHHHHHhc---chHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCe
Confidence 999999999999887643 3456889999999888875 3678888888899999999999998767543 2456677
Q ss_pred EEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeecCHHHHHHHHHHHHHHHHhhCC
Q 012095 391 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAASLTTLQAAVERIKKGLLTLRP 467 (471)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~---~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~ 467 (471)
|+|++++.. + .+..++.+.|.++ ||.+.||..|+. ++++|++++.+++++++++++|++++.+++.
T Consensus 311 ~~~~~~~~~-~---------~~~~~l~~~l~~~-gi~v~~g~~~~~~~~~~~iR~s~~~~~e~l~~~~~~l~~~~~~~~~ 379 (380)
T PRK06225 311 MMVIDISEA-G---------IDPEDLVEYLLER-KIFVRQGTYTSKRFGDRYIRVSFSIPREQVEVFCEEFPDVVETLRT 379 (380)
T ss_pred EEEEEcccc-c---------CCHHHHHHHHHHC-CEEEcCCcccCcCCCCceEEEEeCCCHHHHHHHHHHHHHHHHHhhc
Confidence 789998642 0 2678899988854 999999987643 4699999999999999999999999988764
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-48 Score=386.63 Aligned_cols=333 Identities=23% Similarity=0.317 Sum_probs=277.8
Q ss_pred cCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHH
Q 012095 93 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 172 (471)
Q Consensus 93 ~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~ 172 (471)
.+.++|+|+.|+|++.+|+.+.+++.+... ...+|++..| .+||+++++++ | +++++|++|+|+++++..++
T Consensus 34 ~~~~~i~l~~~~~~~~~~~~~~~al~~~~~-~~~~Y~~~~g-~~lr~~ia~~~----~--~~~~~i~~t~G~~~~l~~~~ 105 (371)
T PRK05166 34 GVPRIAKLGSNENPLGPSPAVRRAFADIAE-LLRLYPDPQG-RALREAIAART----G--VPADRIILGNGSEDLIAVIC 105 (371)
T ss_pred CCcceEEcCCCCCCCCCCHHHHHHHHHHHH-HhhcCCCCcH-HHHHHHHHHHh----C--cCHHHEEEcCCHHHHHHHHH
Confidence 345799999999999888899998887543 3568988788 49999999986 4 47889999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHH
Q 012095 173 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 252 (471)
Q Consensus 173 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~ 252 (471)
.+++++||.|++++|+|+.+...++..|++++.++++. ++++|++++++++++++++++++|||||||.+++.+++++
T Consensus 106 ~~~~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~ 183 (371)
T PRK05166 106 RAVLRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTP--DLGFDLDALCAAVARAPRMLMFSNPSNPVGSWLTADQLAR 183 (371)
T ss_pred HHhcCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCC--CCCCCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999864 4679999999999888999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEccCCCccccCCCCcccccc-CCCCCCceEEEecCCcccCccchhheeeEc-CHHHHHHHHHHHhc
Q 012095 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS-LPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQ 330 (471)
Q Consensus 253 i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~-~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~-~~~~i~~l~~~~~~ 330 (471)
|+++|+ + +++||+||+|.++.+++. .++... +....+++|+++||||.||++|+|+||+++ ++++++.+.+...
T Consensus 184 l~~~~~-~-~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~~~~~- 259 (371)
T PRK05166 184 VLDATP-P-ETLIVVDEAYAEYAAGDD-YPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPELVGLLDRVRT- 259 (371)
T ss_pred HHHhCC-C-CcEEEEECcHHHhcCCcC-cccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCHHHHHHHHHhcc-
Confidence 999886 4 688999999999886432 233332 222346899999999999999999999775 7889888877654
Q ss_pred ccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCC
Q 012095 331 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI 410 (471)
Q Consensus 331 ~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~ 410 (471)
..+++.++|.++.++|.. .+|+++.++.++++|+.+.+.|++. |+.+. |.+|+|+|++++.
T Consensus 260 -~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~-p~~g~fl~~~~~~------------ 320 (371)
T PRK05166 260 -PFNVNGAAQAAALAALDD----EEHLAKGVALALAERERLKKELAEM-GYRIA-PSRANFLFFDARR------------ 320 (371)
T ss_pred -CCCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHC-cCeeC-CCcCCEEEEeCCC------------
Confidence 345899999999988874 6789999999999999999999988 88764 5667889998753
Q ss_pred CCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHH
Q 012095 411 ENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKG 461 (471)
Q Consensus 411 ~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~ 461 (471)
++.++++.|+++ ||.+.||..++.+++|||+++.. ++.+++++.|+++
T Consensus 321 -~~~~l~~~l~~~-gi~v~p~~~~~~~~~iRi~~~~~-~~~~~l~~~l~~i 368 (371)
T PRK05166 321 -PASAVAEALLRQ-GVIVKPWKQPGFETFIRVSIGSP-EENDHFVAALDKV 368 (371)
T ss_pred -CHHHHHHHHHHC-CeEEecCCCCCCCCeEEEEcCCH-HHHHHHHHHHHHH
Confidence 567899998876 99999998877789999999973 3344444444433
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-47 Score=385.19 Aligned_cols=350 Identities=19% Similarity=0.247 Sum_probs=272.5
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHH----cCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC---CCcEEEeCChHHHHH
Q 012095 97 VIRLAAGEPDFDTPVLIAEAGINAIR----EGFTRYTPNAGTLELRSAICHKLKEENGLSYT---PDQILVSNGAKQSIL 169 (471)
Q Consensus 97 ~i~l~~g~~~~~~p~~v~~a~~~~~~----~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~---~~~i~it~G~~~al~ 169 (471)
.++.+.|.-.-+..+.+.+++.+++. ....+|++..|.++||+++++++.+..+. +. .++|++|+|+++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~-~~~~~~~~I~it~G~~~al~ 83 (388)
T PRK08637 5 KYNATIGMATEKGGPMYLSSLQDLLNDLTPDEIFPYAPPQGIPELRDLWQEKMLRENPS-LSGKKMSLPIVTNALTHGLS 83 (388)
T ss_pred ceecceeeEecCCCcchHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHHhccCcc-ccccccceeeEccchHHHHH
Confidence 45556665211112233344443333 34678999999999999999999765532 23 268999999999999
Q ss_pred HHHHHhcCCCCeEEEcCCCCCChHHHHH-HcCCEEEEecCCCCCCCcCCHHHHHhhhc----cCCcEEEEcCCCCCcccC
Q 012095 170 QAVLAVCSPGDEVIIPAPFWVSYPEMAR-IADATPVILPTRISENFLLDPKVLESKLT----EKSRLLILCSPSNPTGSV 244 (471)
Q Consensus 170 ~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-~~G~~~~~v~~~~~~~~~ld~e~l~~~l~----~~~~~i~i~~p~NPtG~~ 244 (471)
.++.++++|||.|++++|+|+.|...+. ..|++++.+|+..+ ++++|+++++++++ +..++++++|||||||.+
T Consensus 84 ~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~~-~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~ 162 (388)
T PRK08637 84 LVADLFVDQGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFDE-DGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYT 162 (388)
T ss_pred HHHHHhcCCCCEEEEcCCCCccHHHHHHHhcCCEEEEecccCC-CCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCC
Confidence 9999999999999999999999998764 68999999998422 34689999999876 344456689999999999
Q ss_pred CCHHHHHHHHHHHHh-----CCCeEEEEccCCCccccCCCCcccc-ccCCCCCCce--EEEecCCcccCccchhheeeEc
Q 012095 245 YPKNLLDEIARIVAK-----HPRLLVLSDEIYEHIIYAPATHTSF-ASLPGMWERT--LTVNGFSKAFAMTGWRLGYIAG 316 (471)
Q Consensus 245 ~~~~~l~~i~~l~~~-----~~~~~ii~De~y~~~~~~~~~~~~~-~~~~~~~~~~--i~~~S~SK~~g~~G~R~G~v~~ 316 (471)
++.+++++|+++|++ | +++||+||+|.++.|++....++ ..+....+++ ++++||||.++++|+|+||+++
T Consensus 163 ~s~~~~~~l~~~~~~~~~~~~-~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~ 241 (388)
T PRK08637 163 PTEKEATAIVEAIKELADAGT-KVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITF 241 (388)
T ss_pred CCHHHHHHHHHHHHHHHhcCC-cEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEE
Confidence 999999999999875 8 99999999999999876544443 2233334675 4566999999999999999985
Q ss_pred C------HHHHHHHHHH----HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCC---CCCee
Q 012095 317 P------KHFVAACNKI----QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL---EGVKM 383 (471)
Q Consensus 317 ~------~~~i~~l~~~----~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~---~g~~~ 383 (471)
+ +++++.+.+. ......++|.++|.++..+|.++.+ ..++.+.+..++++++.+.+.|++. +++.+
T Consensus 242 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~-~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~ 320 (388)
T PRK08637 242 GTKAGSSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALNSPEF-DKEKQEKFQILKERYEKTKEVLYDGKYDDAWQA 320 (388)
T ss_pred ccccCCcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccc
Confidence 4 6788877642 1223346899999999999975322 4556777788999999999888764 26888
Q ss_pred eCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec-CHHHHHHHHHHHHHHH
Q 012095 384 SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGL 462 (471)
Q Consensus 384 ~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~-~~e~i~~~~~~l~~~l 462 (471)
.+|++|||+|++++.. ++.+|+++|++++||.+.++ .++++||+++. +.+++++++++|.+++
T Consensus 321 ~~~~~g~~~~~~l~~~------------~~~~l~~~l~~~~gv~~~~~----~~~~iRi~~~~~~~~~i~~~~~~l~~~~ 384 (388)
T PRK08637 321 YPFNSGYFMCLKLKGV------------DAEELRVHLLEKYGIGTIAL----NETDLRIAFSCVEEEDIPELFDSIYKAI 384 (388)
T ss_pred ccccceEEEEecCChH------------HHHHHHHHHhhhcceEEEec----cCCceEEEeecCCHHHHHHHHHHHHHHH
Confidence 8899999999999742 57889999987779988753 36799999998 8899999999999999
Q ss_pred HhhC
Q 012095 463 LTLR 466 (471)
Q Consensus 463 ~~~~ 466 (471)
+.++
T Consensus 385 ~~~~ 388 (388)
T PRK08637 385 KDLR 388 (388)
T ss_pred HhcC
Confidence 8653
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=375.61 Aligned_cols=330 Identities=28% Similarity=0.434 Sum_probs=286.0
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 175 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l 175 (471)
++++|+.|++++++|+.+.+++.+++. ....| |+....+|+++++++++ . +++++|++++|+++.|..+++++
T Consensus 23 ~~i~LssNenP~gp~~~~~~~~~~~~~-~~~rY-Pd~~~~~l~~a~a~~~~----~-~~~~~V~~gnGsde~i~~l~~~~ 95 (356)
T COG0079 23 GIIKLSSNENPYGPPPKVIEAIRAALD-KLNRY-PDPDYRELRAALAEYYG----V-VDPENVLVGNGSDELIELLVRAF 95 (356)
T ss_pred cceeecCCCCCCCCCHHHHHHHHHHHH-hhccC-CCCcHHHHHHHHHHHhC----C-CCcceEEEcCChHHHHHHHHHHh
Confidence 589999999999999999999988876 46778 66688999999999974 2 57899999999999999999999
Q ss_pred cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHH
Q 012095 176 CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR 255 (471)
Q Consensus 176 ~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~ 255 (471)
+.|||.|+++.|+|..|...++..|++++.++..+ |.+|++.+.+.+.+++++|++||||||||..++.++++++++
T Consensus 96 ~~~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~---~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~~l~~ 172 (356)
T COG0079 96 VEPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLKE---FRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRALLE 172 (356)
T ss_pred hcCCCEEEEcCCChHHHHHHHHhcCCeEEEecccc---cccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999864 889999999999889999999999999999999999999998
Q ss_pred HHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCC
Q 012095 256 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA 335 (471)
Q Consensus 256 l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~ 335 (471)
.+.+ +.+||+||+|.+|.- .+...+....+|+++++||||.||++|+|+||+++++++++.+.+++.+|+ .
T Consensus 173 ~~~~--~~~vVvDEAY~eF~~-----~~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~~~~i~~l~~vr~p~~--v 243 (356)
T COG0079 173 ALPE--GGLVVIDEAYIEFSP-----ESSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIANPELIAALNKVRPPFN--V 243 (356)
T ss_pred hCCC--CcEEEEeCchhhcCC-----chhhhhccCCCCEEEEEecHHhhhcchhceeeccCCHHHHHHHHHhcCCCC--C
Confidence 8865 478888999999753 222222224678999999999999999999999999999999999998776 8
Q ss_pred ChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCe-eeCCCcceEEeEecCCccCCcccCCCCCCCHH
Q 012095 336 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSE 414 (471)
Q Consensus 336 ~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~-~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (471)
|.+++.++.++|.+ ++++++.++...+.|+++.+.|+++ |+. +.+++ +.|++++++.. ...
T Consensus 244 ~~~a~~aa~aal~~----~~~~~~~~~~~~~~r~rl~~~l~~~-~~~~v~pS~-aNFvlv~~~~~------------~~~ 305 (356)
T COG0079 244 SSPALAAAIAALRD----ADYLEESVERIREERERLYAALKAL-GLFGVFPSQ-ANFVLVRVPDA------------EAA 305 (356)
T ss_pred CHHHHHHHHHHccc----HHHHHHHHHHHHHHHHHHHHHHHhC-CCCeecCCC-CcEEEEECCCc------------cHH
Confidence 89999999999985 7999999999999999999999998 455 55444 66689998741 255
Q ss_pred HHHHHHHHcCCEEEECCCC-CCCCCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012095 415 SLCRYLLDKAQVALVPGDA-FGDDTCIRISYAASLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 415 ~l~~~Ll~~~gV~v~pg~~-f~~~~~iRis~~~~~e~i~~~~~~l~~~l~~ 464 (471)
.+.+.|+++ ||.++.... ...++|+||+++..+|+ +++++.|.+++..
T Consensus 306 ~l~~~L~~~-giivR~~~~~~~~~~~lRitvgt~een-~~ll~AL~~~~~~ 354 (356)
T COG0079 306 ALAEALLKK-GILVRDCSSVGLLPGYLRITVGTPEEN-DRLLAALREVLKG 354 (356)
T ss_pred HHHHHHHHC-CEEEEeCCCCCCCCCeEEEEeCCHHHH-HHHHHHHHHHHhc
Confidence 788888876 999999865 33567999999997666 9999999888754
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-47 Score=379.64 Aligned_cols=328 Identities=21% Similarity=0.339 Sum_probs=275.7
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHH
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~ 174 (471)
+++|+|+.|+|++++|+.+.+++.+++.+....| |..|..+||++++++++ +++++|++|+|++++|..++++
T Consensus 24 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~y-~~~~~~~lr~aia~~~~------~~~~~I~it~G~~~al~~~~~~ 96 (353)
T PRK05387 24 AKLIKLNTNENPYPPSPKVLEAIRAALGDDLRLY-PDPNADALRQAIAAYYG------LDPEQVFVGNGSDEVLAHAFLA 96 (353)
T ss_pred cceeeccCCCCCCCCCHHHHHHHHHHhhhhhhcC-CCCcHHHHHHHHHHHhC------CCHHHEEEcCCHHHHHHHHHHH
Confidence 4689999999999988999999998776656788 55577999999999973 5889999999999999999999
Q ss_pred hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHH
Q 012095 175 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 254 (471)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~ 254 (471)
+++|||+|++++|+|+.|...++..|++++.++++ ++|.+|++++++ .+++++++|||||||.+++.+++++|+
T Consensus 97 l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~----~~~~v~~~~P~NPtG~~~~~~~~~~l~ 170 (353)
T PRK05387 97 FFNHDRPLLFPDITYSFYPVYAGLYGIPYEEIPLD--DDFSIDVEDYLR----PNGGIIFPNPNAPTGIALPLAEIERIL 170 (353)
T ss_pred hcCCCCEEEEeCCCHHHHHHHHHHcCCEEEEeecC--CCCCCCHHHHHh----cCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999985 357799999874 467889999999999999999998888
Q ss_pred HHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcc-cC
Q 012095 255 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF-TS 333 (471)
Q Consensus 255 ~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~-~~ 333 (471)
+.+ + +++||+||+|.++ ++....++ ....+++++++||||.||++|+|+||+++++++++.+.+..... ..
T Consensus 171 ~~~--~-~~~livDe~y~~~--~~~~~~~~---~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~~~~l~~~~~~~~~~ 242 (353)
T PRK05387 171 AAN--P-DSVVVIDEAYVDF--GGESAIPL---IDRYPNLLVVQTFSKSRSLAGLRVGFAIGHPELIEALNRVKNSFNSY 242 (353)
T ss_pred HhC--C-CcEEEEeCccccc--CCcchHHH---HhhCCCEEEEEehhHhhcchhhhceeeecCHHHHHHHHHhhccCCCC
Confidence 754 4 7999999999875 33221222 12357899999999999999999999999999999998876543 45
Q ss_pred CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCH
Q 012095 334 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 413 (471)
Q Consensus 334 ~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~ 413 (471)
+++.++|.++.++|.+ .+++++.+++++++++.+.+.|+++ |+.+. |.+++|+|++++.. ++
T Consensus 243 ~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~------------~~ 304 (353)
T PRK05387 243 PLDRLAQAGAIAAIED----EAYFEETRAKVIATRERLVEELEAL-GFEVL-PSKANFVFARHPSH------------DA 304 (353)
T ss_pred CcCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHC-CCeEC-CCcCcEEEEECCCC------------CH
Confidence 6889999999998874 6778889999999999999999988 88765 56778899988742 67
Q ss_pred HHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012095 414 ESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLL 463 (471)
Q Consensus 414 ~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~ 463 (471)
.++++.|.++ ||.+.+....+.++++|++++ +.+++++++++|++++.
T Consensus 305 ~~~~~~l~~~-gi~v~~~~~~~~~~~iRis~~-~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 305 AELAAKLRER-GIIVRHFNKPRIDQFLRITIG-TDEEMEALVDALKEILA 352 (353)
T ss_pred HHHHHHHHHC-CEEEEECCCCCCCCeEEEEeC-CHHHHHHHHHHHHHHhh
Confidence 8899998765 999976443334679999998 55899999999998764
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-47 Score=379.68 Aligned_cols=337 Identities=24% Similarity=0.311 Sum_probs=283.5
Q ss_pred hcCCCe-EEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHH
Q 012095 92 QAGVSV-IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQ 170 (471)
Q Consensus 92 ~~g~~~-i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~ 170 (471)
+.|.++ |+|+.|+|++++|+.+.+++.+.... ..+|++. +..+||++|++++ + +++++|++|+|+++++..
T Consensus 28 ~~g~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~-~~~Y~~~-~~~~Lr~~ia~~~----~--~~~~~I~it~G~~~~l~~ 99 (369)
T PRK08153 28 QRGRPFRARIGANESGFGPSPSVIAAMREAAAE-IWKYGDP-ENHDLRHALAAHH----G--VAPENIMVGEGIDGLLGL 99 (369)
T ss_pred hcCCcceeEecCCCCCCCCCHHHHHHHHHHHHH-hhcCCCC-ccHHHHHHHHHHh----C--CCHHHEEEcCCHHHHHHH
Confidence 356654 69999999999999999999887643 4678654 6899999999986 3 578999999999999999
Q ss_pred HHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhh-ccCCcEEEEcCCCCCcccCCCHHH
Q 012095 171 AVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL-TEKSRLLILCSPSNPTGSVYPKNL 249 (471)
Q Consensus 171 ~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l-~~~~~~i~i~~p~NPtG~~~~~~~ 249 (471)
++.++++|||.|++++|+|+.|...++..|++++.+|++.+ .+|++.+++.+ ++++++|++++||||||.+++.++
T Consensus 100 ~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~---~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~~~ 176 (369)
T PRK08153 100 IVRLYVEPGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRDD---REDLDALLDAARRENAPLVYLANPDNPMGSWHPAAD 176 (369)
T ss_pred HHHHhcCCCCEEEECCCcchHHHHHHHHcCCeEEEeeCCCC---CCCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCHHH
Confidence 99999999999999999999999999999999999998543 37999998766 467899999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHh
Q 012095 250 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS 329 (471)
Q Consensus 250 l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~ 329 (471)
+++|+++|+ + +++||+||+|.++.+++. .. .+....+++++++||||.+|++|+|+||+++++++++.+.+...
T Consensus 177 l~~l~~~~~-~-~~~lI~DE~y~~~~~~~~-~~---~~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~~~~~~l~~~~~ 250 (369)
T PRK08153 177 IVAFIEALP-E-TTLLVLDEAYCETAPAGA-AP---PIDTDDPNVIRMRTFSKAYGLAGARVGYAIGAPGTIKAFDKVRN 250 (369)
T ss_pred HHHHHHhCC-C-CcEEEEeCchhhhcCccc-ch---hhhhcCCCEEEEecchHhccCcchheeeeecCHHHHHHHHHhhc
Confidence 999999886 5 789999999999877542 12 22223578999999999999999999999999999999988775
Q ss_pred cccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCC
Q 012095 330 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK 409 (471)
Q Consensus 330 ~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~ 409 (471)
. ++.+.++|.++.++|.+ .+|+++.++.++++|+.+.+.|++. |+.+. |.+++|+|++++...
T Consensus 251 ~--~~~s~~~q~~~~~~l~~----~~~~~~~~~~~~~~r~~~~~~L~~~-g~~~~-p~~~~f~~~~~~~~~--------- 313 (369)
T PRK08153 251 H--FGMNRIAQAAALAALKD----QAYLAEVVGKIAAARDRIAAIARAN-GLTPL-PSATNFVAIDCGRDG--------- 313 (369)
T ss_pred C--CCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHC-CCccC-CCcCcEEEEECCCCc---------
Confidence 4 46899999999999974 6889999999999999999999887 77654 678889999885310
Q ss_pred CCCHHHHHHHHHHcCCEEEE-CCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012095 410 IENSESLCRYLLDKAQVALV-PGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 410 ~~~~~~l~~~Ll~~~gV~v~-pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~~~~ 466 (471)
....++.++|+++ ||.+. ||.. ..++++|++++ ++++++.+++.|++++...+
T Consensus 314 -~~a~~l~~~l~~~-Gi~v~~p~~~-~~~~~iRis~~-~~~~~~~~~~al~~~~~~~~ 367 (369)
T PRK08153 314 -AFARAVLDGLIAR-DIFVRMPGVA-PLDRCIRVSCG-PDEELDLFAEALPEALEAAR 367 (369)
T ss_pred -ccHHHHHHHHHHC-CeEEeeCCCC-CCCCeEEEecC-CHHHHHHHHHHHHHHHHHhh
Confidence 1567888888865 99995 6653 23579999999 56899999999999987654
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-47 Score=362.59 Aligned_cols=331 Identities=23% Similarity=0.295 Sum_probs=280.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHH-HHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEE
Q 012095 126 TRYTPNAGTLELRSAICHKLK-EENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV 204 (471)
Q Consensus 126 ~~Y~~~~G~~~lr~~ia~~~~-~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~ 204 (471)
.+|++..|.++|...+.++.. ..+...+..++|++|+|.+.++..+++.++++||.|+++.++|++....++..|++++
T Consensus 94 lQYg~s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~s~~a~gv~~i 173 (472)
T KOG0634|consen 94 LQYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQSMEALGVKII 173 (472)
T ss_pred hccccccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhhcCCCceEEecccchHHHHhccccCceEE
Confidence 589999999999999999876 4555567778999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCcCCHHHHHhhhcc---------CCcEEE-EcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCcc
Q 012095 205 ILPTRISENFLLDPKVLESKLTE---------KSRLLI-LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 274 (471)
Q Consensus 205 ~v~~~~~~~~~ld~e~l~~~l~~---------~~~~i~-i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~ 274 (471)
+|+++.+ ++++|.|++.+.. +++++| |++.+||||.+++.+++++|+++|++| |++||+||+|..+
T Consensus 174 pv~md~~---Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKy-DfLIVeDdpYy~L 249 (472)
T KOG0634|consen 174 PVKMDQD---GIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKY-DFLIVEDDPYYFL 249 (472)
T ss_pred eccccCC---CCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHc-CEEEEecCcccee
Confidence 9998654 3899999998742 467777 688899999999999999999999999 9999999999999
Q ss_pred ccCC---C-----C-----------ccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCC
Q 012095 275 IYAP---A-----T-----------HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA 335 (471)
Q Consensus 275 ~~~~---~-----~-----------~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~ 335 (471)
.|+. . + .+++.+++- .+|||.+.||||.++ ||+|+||+.+++-+++++.+.....+.++
T Consensus 250 q~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDt-dGrVIr~dSFSKiia-PGlRlG~it~~~~~l~ril~~ae~~t~~p 327 (472)
T KOG0634|consen 250 QMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDT-DGRVIRNDSFSKIIA-PGLRLGWITGNSLFLKRILDLAEVATSGP 327 (472)
T ss_pred eccccCCCccccCccccHHHHHHhhcCCcccccc-cccEEeccchhhhhc-CcceeEEeecCHHHHHHHhhhcceeecCc
Confidence 8862 1 1 123444443 689999999999997 99999999999999999999988889999
Q ss_pred ChHHHHHHHHHHhccCC--ChHHHHHHHHHHHHHHHHHHHHhcC-CCC--CeeeCCCcceEEeEecCCccCCcccCCCCC
Q 012095 336 SSISQKAGVAALGLGYA--GGEVVSKMVKAFRERRDFLVKSFGE-LEG--VKMSEPQGAFYLFIDFSTYYGSEAEGFGKI 410 (471)
Q Consensus 336 ~~~~q~aa~~~L~~~~~--~~~~~~~~~~~~~~~r~~l~~~L~~-~~g--~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~ 410 (471)
+.+.|.++.+.|..... ..+|+.+++..|..||+.+..+|.+ +|+ +++.+|.+|||+|++++.. .. .....+
T Consensus 328 Sg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~-~~--~~~~~i 404 (472)
T KOG0634|consen 328 SGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYI-NF--DTKKSI 404 (472)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEeccc-cc--ccccch
Confidence 99999999998875311 1389999999999999999999998 564 6788999999999999821 11 111111
Q ss_pred CCHHHHHHHHHHcCCEEEECCCCCCCC------C-cEEEEeec-CHHHHHHHHHHHHHHHHhh
Q 012095 411 ENSESLCRYLLDKAQVALVPGDAFGDD------T-CIRISYAA-SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 411 ~~~~~l~~~Ll~~~gV~v~pg~~f~~~------~-~iRis~~~-~~e~i~~~~~~l~~~l~~~ 465 (471)
...+++...++.+.||.+++|++|..+ . ++|++++. +.|+++++++|+..++++.
T Consensus 405 ~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a~~e~l~~g~~rf~~~ike~ 467 (472)
T KOG0634|consen 405 NQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFAEPEKLDEGIERFGSVIKEH 467 (472)
T ss_pred HHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeecCCHHHHHHHHHHHHHHHHHH
Confidence 235666666777789999999999743 2 89999998 8899999999999999874
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-47 Score=381.84 Aligned_cols=336 Identities=26% Similarity=0.421 Sum_probs=286.2
Q ss_pred cCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHH
Q 012095 93 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 172 (471)
Q Consensus 93 ~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~ 172 (471)
.+.++|+|+.|++++++++.+.+++.+.+.. ...|++. +..+||+++++++ | +++++|++|+|+++++..++
T Consensus 30 ~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~-~~~y~~~-~~~~lr~~ia~~~----~--~~~~~i~~t~G~~~~l~~~~ 101 (367)
T PRK02731 30 GIADIIKLASNENPLGPSPKAIEAIRAAADE-LHRYPDG-SGFELKAALAEKF----G--VDPERIILGNGSDEILELLA 101 (367)
T ss_pred CCCceEEecCCCCCCCCCHHHHHHHHHHHHh-hcCCCCC-cHHHHHHHHHHHh----C--cCHHHEEEcCCHHHHHHHHH
Confidence 5668999999999998888899999887754 5778554 4579999999987 3 47789999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHH
Q 012095 173 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 252 (471)
Q Consensus 173 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~ 252 (471)
.+++++||+|++++|+|..|...++..|++++.++. +++.+|++.+++.+++++++|++++||||||.+++.+++++
T Consensus 102 ~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~---~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~ 178 (367)
T PRK02731 102 RAYLGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPA---KDYGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLPAEEVER 178 (367)
T ss_pred HHhcCCCCEEEEecCCHHHHHHHHHHcCCeEEEecc---cCCCCCHHHHHHHhCCCCcEEEEeCCCCCCCcCCCHHHHHH
Confidence 999999999999999999999889999999999987 34679999999999889999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhccc
Q 012095 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 332 (471)
Q Consensus 253 i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~ 332 (471)
|++.++ + +++||+||+|.++.+++....++..+ ...+++++++||||.||++|+|+||+++++++++.+.+....+
T Consensus 179 l~~~~~-~-~~~li~De~y~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~l~~~~~~~- 254 (367)
T PRK02731 179 FLAGVP-P-DVLVVLDEAYAEYVRRKDYEDGLELV-AKFPNVVVTRTFSKAYGLAGLRVGYGIAPPEIIDALNRVRQPF- 254 (367)
T ss_pred HHHhCC-C-CcEEEEECcHHHhccCcCcccHHHHH-hhcCCEEEEeeehHhhcCcccceeeeeCCHHHHHHHHHccCCC-
Confidence 988874 6 89999999999888754333333222 2357899999999999999999999999999999998876543
Q ss_pred CCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCC
Q 012095 333 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 412 (471)
Q Consensus 333 ~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~ 412 (471)
+.+.++|.++..+|+. ..++++.++.++++++.+.+.|++. |+.+. |.+|+|+|++++.. .+
T Consensus 255 -~~~~~~~~~a~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~g~~~~i~~~~~-----------~~ 316 (367)
T PRK02731 255 -NVNSLALAAAVAALDD----DAFVEKSRALNAEGMAWLTEFLAEL-GLEYI-PSVGNFILVDFDDG-----------KD 316 (367)
T ss_pred -CCCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHHC-CCccC-CCCceEEEEECCCC-----------CC
Confidence 4688999999999974 6788999999999999999999988 88776 45577899998643 26
Q ss_pred HHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012095 413 SESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLL 463 (471)
Q Consensus 413 ~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~ 463 (471)
+.++++.|.++ ||.+.+|..|+.++++|++++ +.++++++++.|+++++
T Consensus 317 ~~~~~~~L~~~-gI~v~~~~~~~~~~~iRis~~-~~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 317 AAEAYQALLKR-GVIVRPVAGYGLPNALRITIG-TEEENRRFLAALKEFLA 365 (367)
T ss_pred HHHHHHHHHHC-CEEEEeCCCCCCCCeEEEecC-CHHHHHHHHHHHHHHHh
Confidence 78999988765 999999998887789999998 45788999999988764
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-47 Score=379.69 Aligned_cols=325 Identities=20% Similarity=0.275 Sum_probs=274.4
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHH
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~ 174 (471)
+++|+|+.|+|++++|+.+.+++.+.+.. ...|++ .+..+||++|++++ | +++++|++|+|+++++..++.+
T Consensus 43 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~-~~~Y~~-~~~~~Lr~aia~~~----~--v~~e~I~it~Gs~~ai~~~~~~ 114 (370)
T PRK09105 43 EGAVFLNANECPLGPSPAARDAAARSAAL-SGRYDL-ELEDDLRTLFAAQE----G--LPADHVMAYAGSSEPLNYAVLA 114 (370)
T ss_pred CCcEEecCCCCCCCCCHHHHHHHHHHHHH-hcCCCC-chHHHHHHHHHHHh----C--cChhhEEEcCChHHHHHHHHHH
Confidence 46899999999999999999999887653 356854 45899999999875 4 5889999999999999999999
Q ss_pred hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHH
Q 012095 175 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 254 (471)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~ 254 (471)
++++||+|++++|+|..|...++..|++++.++++. +|.+|++.+++. .++++++++||||||||.+++.+++++|+
T Consensus 115 l~~~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~-~~~~~~v~l~nP~NPTG~~~~~~~l~~l~ 191 (370)
T PRK09105 115 FTSPTAGLVTADPTYEAGWRAADAQGAPVAKVPLRA--DGAHDVKAMLAA-DPNAGLIYICNPNNPTGTVTPRADIEWLL 191 (370)
T ss_pred HcCCCCEEEEeCCChHHHHHHHHHcCCeEEEecCCC--CCCCCHHHHHhc-CCCCCEEEEeCCCCCCCcCcCHHHHHHHH
Confidence 999999999999999999999999999999999864 577999999887 56789999999999999999999999999
Q ss_pred HHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCC
Q 012095 255 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 334 (471)
Q Consensus 255 ~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~ 334 (471)
+.+ ++ +++||+||+|.++... ++..++....+++++++||||.||++|||+||+++++++++.+... . ...
T Consensus 192 ~~~-~~-~~~lIvDEaY~~f~~~----~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~~i~~l~~~-~--~~~ 262 (370)
T PRK09105 192 ANK-PA-GSVLLVDEAYIHFSDA----PSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARPDLLAKLARF-G--HNP 262 (370)
T ss_pred HhC-CC-CcEEEEECchHHhccC----cchHHHHhhCCCEEEEecccHhhcCCccceeeeecCHHHHHHHHhc-C--CCC
Confidence 875 46 7999999999876421 2333443346789999999999999999999999999999998876 2 334
Q ss_pred CChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHH
Q 012095 335 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSE 414 (471)
Q Consensus 335 ~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (471)
++.+.|.++.++|.+ .+|+++.++.++++++.+.+.|+++ |+.+.+|+++|| +++++. +..
T Consensus 263 ~~~~~~~aa~~~L~~----~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~~~f~-~~~~~~-------------~~~ 323 (370)
T PRK09105 263 LPVPAAAAGLASLRD----PKLVPQRRAENAAVREDTIAWLKKK-GYKCTPSQANCF-MVDVKR-------------PAK 323 (370)
T ss_pred cCHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHHHHHHHHC-CCCcCCCCCcEE-EEeCCC-------------CHH
Confidence 788899999999974 6889999999999999999999987 888888888887 467652 678
Q ss_pred HHHHHHHHcCCEEEECCCCCC-CCCcEEEEeecCHHHHHHHHHHHHHHH
Q 012095 415 SLCRYLLDKAQVALVPGDAFG-DDTCIRISYAASLTTLQAAVERIKKGL 462 (471)
Q Consensus 415 ~l~~~Ll~~~gV~v~pg~~f~-~~~~iRis~~~~~e~i~~~~~~l~~~l 462 (471)
++++.|+++ ||.+ |..|+ .++|+|++++. +++++++++.|++++
T Consensus 324 ~l~~~L~~~-gI~v--~~~~~~~~~~~Ris~~~-~~~~~~l~~al~~~~ 368 (370)
T PRK09105 324 AVADAMAKQ-GVFI--GRSWPIWPNWVRVTVGS-EEEMAAFRSAFAKVM 368 (370)
T ss_pred HHHHHHHHC-CcEE--ecCCCCCCCeEEEEcCC-HHHHHHHHHHHHHHh
Confidence 899999876 9988 44453 36899999995 567788888877665
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=375.52 Aligned_cols=327 Identities=22% Similarity=0.374 Sum_probs=273.6
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHH
Q 012095 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 172 (471)
Q Consensus 94 g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~ 172 (471)
+.++|+|+.|+|++++|+.+++++.+++.. ...+|++ .|..+||++++++++ .+ ..++|++|+|+++++..++
T Consensus 25 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~lr~~ia~~~~----~~-~~~~I~~t~G~~~~i~~~~ 98 (356)
T PRK04870 25 ATGMVKLDAMENPYRLPAELRAELGERLAEVALNRYPD-PRAAALKAALRAAMG----VP-AGADVLLGNGSDELIQLLA 98 (356)
T ss_pred CCCceeCcCCCCCCCCCHHHHHHHHHHhhccccccCCC-CCHHHHHHHHHHHhC----cC-CCCcEEEcCCHHHHHHHHH
Confidence 357999999999999999999999998864 3567855 788999999999973 22 2358999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc-cCCcEEEEcCCCCCcccCCCHHHHH
Q 012095 173 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLD 251 (471)
Q Consensus 173 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~-~~~~~i~i~~p~NPtG~~~~~~~l~ 251 (471)
.+++++||+|++++|+|..|...++..|++++.++++ ++|.+|++.+++++. .++++|++++||||||.+++.++++
T Consensus 99 ~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~--~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~ 176 (356)
T PRK04870 99 LACAKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLT--ADFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDDADVE 176 (356)
T ss_pred HHhcCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCC--CCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCHHHHH
Confidence 9999999999999999999999999999999999986 357899999999985 4899999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcc
Q 012095 252 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 331 (471)
Q Consensus 252 ~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~ 331 (471)
+|+++| + .++|+||+|.++.+.. .... +. ..+++++++|||| ++++|+|+||+++++++++.+.+.+..
T Consensus 177 ~i~~~~--~--~~ii~De~y~~~~~~~-~~~~---~~-~~~~vi~~~S~SK-~~~~GlRiG~~i~~~~~i~~~~~~~~~- 245 (356)
T PRK04870 177 RIIEAA--P--GLVVVDEAYQPFAGDS-WLPR---LA-RFPNLLVMRTVSK-LGLAGLRLGYLAGHPAWIAELDKVRPP- 245 (356)
T ss_pred HHHHHC--C--CEEEEECCchhhcCcc-hHHH---Hh-hCCCEEEEecchh-hhhHHHhhhhhhCCHHHHHHHHHccCC-
Confidence 999888 3 5788899999875432 1111 22 2468999999999 899999999999999999998886643
Q ss_pred cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCC
Q 012095 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 411 (471)
Q Consensus 332 ~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~ 411 (471)
++.+.++|.++..++++ .+++++.++.++++++.+.+.|++++|+.+. |.+++|+|++++
T Consensus 246 -~~~~~~~q~~a~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~-------------- 305 (356)
T PRK04870 246 -YNVNVLTQATALFALEH----VDVLDAQAAQLRAERTRLAAALAALPGVTVF-PSAANFILVRVP-------------- 305 (356)
T ss_pred -CcCCHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECC--------------
Confidence 45788999998888874 4668888899999999999999998888765 566778999886
Q ss_pred CHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHH
Q 012095 412 NSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKG 461 (471)
Q Consensus 412 ~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~ 461 (471)
+..++.+.|. ++||.+.||..|+. ++++||+++. .++.+++++.|.++
T Consensus 306 ~~~~~~~~l~-~~gI~v~~~~~f~~~~~~~iRis~~~-~~~~~~l~~al~~~ 355 (356)
T PRK04870 306 DAAAVFDGLK-TRGVLVKNLSGMHPLLANCLRVTVGT-PEENAQFLAALKAA 355 (356)
T ss_pred CHHHHHHHHH-HCCEEEEECCCCCCCCCCeEEEeCCC-HHHHHHHHHHHHHh
Confidence 3467777665 55999999998863 5799999995 46777888877764
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=375.10 Aligned_cols=320 Identities=23% Similarity=0.377 Sum_probs=264.9
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 175 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l 175 (471)
..|+|+.|++++++|+.+. ......| |.....+|++.+++++ | +++++|++|+|+++++..+++++
T Consensus 29 ~~~~l~~Nenp~~~~~~~~-------~~~~~~Y-p~~~~~~l~~~~a~~~----g--~~~~~I~~~~Gs~e~i~~~~~~~ 94 (351)
T PRK01688 29 GDVWLNANEYPTAVEFQLT-------QQTLNRY-PECQPKAVIENYAAYA----G--VKPEQVLVSRGADEGIELLIRAF 94 (351)
T ss_pred CceEecCCCCCCCCChhhc-------ccccccC-CCCChHHHHHHHHHHh----C--CCHHHEEEcCCHHHHHHHHHHHh
Confidence 4699999999999876531 1234667 6655678888888775 5 58899999999999999999999
Q ss_pred cCCC-CeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHH
Q 012095 176 CSPG-DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 254 (471)
Q Consensus 176 ~~~g-d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~ 254 (471)
+++| |.|++++|+|..|...++..|++++.+|++. +|.+|++++++++ +++++|++||||||||.+++.+++++|+
T Consensus 95 ~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~~--~~~~d~~~l~~~~-~~~~lv~l~nPnNPTG~~~~~~~l~~l~ 171 (351)
T PRK01688 95 CEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTLD--NWQLDLPAIADNL-DGVKVVYVCSPNNPTGNLINPQDLRTLL 171 (351)
T ss_pred cCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecCC--CCCCCHHHHHHhc-cCCcEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 9997 9999999999999999999999999999863 5889999999988 5899999999999999999999999999
Q ss_pred HHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCC
Q 012095 255 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 334 (471)
Q Consensus 255 ~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~ 334 (471)
+.|++ +.+||+||+|.+|... .+...+....+++++++||||.||++|+|+||+++++++++.+.+....+ +
T Consensus 172 ~~~~~--~~~vivDEay~~f~~~----~s~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~~~~~i~~l~~~~~~~--~ 243 (351)
T PRK01688 172 ELTRG--KAIVVADEAYIEFCPQ----ASLAGWLAEYPHLVILRTLSKAFALAGLRCGFTLANEEVINLLLKVIAPY--P 243 (351)
T ss_pred HhCCC--CcEEEEECchhhcCCC----CChHHHHhhCCCEEEEecchHhhcCHHHHHhHHhCCHHHHHHHHhccCCC--C
Confidence 99875 4679999999987632 12222223357999999999999999999999999999999998876554 4
Q ss_pred CChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHH
Q 012095 335 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSE 414 (471)
Q Consensus 335 ~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (471)
.+.++|.++.++|.+. ..+++++.++.++++|+++.+.|++++|+....|.+++|+|++++ ++.
T Consensus 244 v~~~~~~~a~~~L~~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~~~~--------------~~~ 307 (351)
T PRK01688 244 LSTPVADIAAQALSPQ--GIAAMRERVAEINANRQWLIAALKEIPCVEQVFDSETNYILARFT--------------ASS 307 (351)
T ss_pred CCHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC--------------CHH
Confidence 7788888888888742 246788888999999999999999887775455667888999875 467
Q ss_pred HHHHHHHHcCCEEEECCCCC-CCCCcEEEEeecCHHHHHHHHHHH
Q 012095 415 SLCRYLLDKAQVALVPGDAF-GDDTCIRISYAASLTTLQAAVERI 458 (471)
Q Consensus 415 ~l~~~Ll~~~gV~v~pg~~f-~~~~~iRis~~~~~e~i~~~~~~l 458 (471)
++.++|+++ ||.++++..| +.++|+|||++. .++++++++.|
T Consensus 308 ~l~~~L~~~-gi~vr~~~~~~~~~~~iRis~~~-~~e~~~l~~al 350 (351)
T PRK01688 308 AVFKSLWDQ-GIILRDQNKQPGLSNCLRITIGT-REECQRVIDAL 350 (351)
T ss_pred HHHHHHHHC-CeEEEECCCcCCCCCeEEEeCCC-HHHHHHHHHhh
Confidence 899988865 9999987655 567899999995 57888888766
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=366.99 Aligned_cols=324 Identities=23% Similarity=0.407 Sum_probs=266.1
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~ 174 (471)
..++|+.|+|++++|+.+.+++.+.+.. ...+|+ ..+..+||+++++++ + +++++|++|+|+++++..++.+
T Consensus 23 ~~~~l~~~~~~~~~p~~~~~a~~~~~~~~~~~~y~-~~~~~~lr~~ia~~~----~--~~~~~i~it~G~~~~l~~~~~~ 95 (351)
T PRK14807 23 YKYKMDANETPFELPEEVIKNIQEIVKSSQVNIYP-DPTAEKLREELARYC----S--VVPTNIFVGNGSDEIIHLIMLA 95 (351)
T ss_pred ceeEccCCCCCCCCCHHHHHHHHHHhhcCcccCCC-CccHHHHHHHHHHHh----C--CCcccEEEecCHHHHHHHHHHH
Confidence 4699999999999999999999887764 346785 456789999999996 3 5789999999999999999999
Q ss_pred hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc-CCcEEEEcCCCCCcccCCCHHHHHHH
Q 012095 175 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEI 253 (471)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~-~~~~i~i~~p~NPtG~~~~~~~l~~i 253 (471)
+++|||+|++++|+|..|...++..|++++.++++ .+|.+|++.+++++++ ++|+|++++||||||.+++.+++++|
T Consensus 96 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l 173 (351)
T PRK14807 96 FINKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLK--EDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIKI 173 (351)
T ss_pred hcCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecC--CCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999986 3477999999999975 89999999999999999996665555
Q ss_pred HHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccC
Q 012095 254 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 333 (471)
Q Consensus 254 ~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~ 333 (471)
++++ +.++|+||+|.++. + ....+. + ...+++|+++||||.||++|+|+||+++++++++.+...+.. .
T Consensus 174 ---~~~~-~~~~ivDe~y~~~~-~-~~~~~~--~-~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~~~~~~~~~~~~--~ 242 (351)
T PRK14807 174 ---IEKS-RGIVVVDEAYFEFY-G-NTIVDV--I-NEFENLIVLRTLSKAFGLAGLRVGYAVANENILKYLNLVKSP--Y 242 (351)
T ss_pred ---HHhC-CCEEEEeCcchhhc-c-cchHHH--h-hhCCCEEEEecchHhcccchhceeeeecCHHHHHHHHHccCC--C
Confidence 5566 67788999998863 2 222222 1 235789999999999999999999999999999999876654 4
Q ss_pred CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCH
Q 012095 334 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 413 (471)
Q Consensus 334 ~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~ 413 (471)
+.+.++|.++..+|.. .++++..+.++++|+.+.+.|.+++|+.+. |.+|+|+|++++ +.
T Consensus 243 ~~~~~~q~~~~~~l~~-----~~~~~~~~~~~~~r~~l~~~l~~~~g~~~~-~~~~~~~~i~~~--------------~~ 302 (351)
T PRK14807 243 NINSLSQVIALKVLRT-----GVLKERVNYILNERERLIKELSKIPGIKVY-PSKTNFILVKFK--------------DA 302 (351)
T ss_pred CcCHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-cCCccEEEEEcC--------------CH
Confidence 5789999999999873 456777778889999999999888888876 455678999886 46
Q ss_pred HHHHHHHHHcCCEEEECCCC-CCCCCcEEEEeecCHHHHHHHHHHHHHH
Q 012095 414 ESLCRYLLDKAQVALVPGDA-FGDDTCIRISYAASLTTLQAAVERIKKG 461 (471)
Q Consensus 414 ~~l~~~Ll~~~gV~v~pg~~-f~~~~~iRis~~~~~e~i~~~~~~l~~~ 461 (471)
.++++.|+++ ||.+.++.. ++.++++||+++.. ++.+++++.|+++
T Consensus 303 ~~~~~~l~~~-gV~v~~~~~~~~~~~~iRis~~~~-~~~~~l~~~l~~~ 349 (351)
T PRK14807 303 DYVYQGLLER-GILVRDFSKVEGLEGALRITVSSC-EANDYLINGLKEL 349 (351)
T ss_pred HHHHHHHHHC-CEEEEECCCCCCCCCeEEEEcCCH-HHHHHHHHHHHHh
Confidence 6788887765 999988654 34568999999864 5566777776654
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=369.48 Aligned_cols=325 Identities=24% Similarity=0.396 Sum_probs=264.9
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 175 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l 175 (471)
..++++.+++.+++++... ....+|+ ..+..+||+++++++ | +++++|++|+|+++++..++.++
T Consensus 32 ~~~~~~~ne~~~~~~~~~~--------~~~~~Y~-~~~~~~lr~~ia~~~----~--~~~~~I~~t~G~~~~l~~~~~~~ 96 (364)
T PRK04781 32 GDVWLNANESAWANPADPD--------ASTRRYP-DPQPPGLRSALAALY----G--CAPEQLLIGRGSDEAIDLLVRAL 96 (364)
T ss_pred CCEEeeCCCCCCCCChhhc--------chhccCC-CCCHHHHHHHHHHHh----C--cChHHEEEeCCHHHHHHHHHHHh
Confidence 3689999999988765311 1245684 456799999999987 3 57899999999999999999999
Q ss_pred cCCC-CeEEEcCCCCCChHHHHHHcCCEEEEecCCC-CCCCcCCHHHHHhhh-ccCCcEEEEcCCCCCcccCCCHHHHHH
Q 012095 176 CSPG-DEVIIPAPFWVSYPEMARIADATPVILPTRI-SENFLLDPKVLESKL-TEKSRLLILCSPSNPTGSVYPKNLLDE 252 (471)
Q Consensus 176 ~~~g-d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~ld~e~l~~~l-~~~~~~i~i~~p~NPtG~~~~~~~l~~ 252 (471)
+.+| |.|++++|+|..|...++..|++++.+|++. +++|.+|++++++.+ ++++++|++++||||||.+++.+++++
T Consensus 97 ~~~g~~~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~ 176 (364)
T PRK04781 97 CVPGRDAVLVTPPVFGMYAVCARLQNAPLVEVPLVDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIER 176 (364)
T ss_pred cCCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCCCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHH
Confidence 9999 7999999999999998999999999999853 356788999986654 678999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhccc
Q 012095 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 332 (471)
Q Consensus 253 i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~ 332 (471)
|++.|+ + +++||+||+|.+|.+.. +........+++|+++||||.||++|+|+||+++++++++.+.+.+..+
T Consensus 177 l~~~~~-~-~~~iI~Deay~~f~~~~----~~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~~~l~~~l~~~~~~~- 249 (364)
T PRK04781 177 ALQALQ-G-KALVVVDEAYGEFSDVP----SAVGLLARYDNLAVLRTLSKAHALAAARIGSLIANAELIAVLRRCQAPY- 249 (364)
T ss_pred HHHhCC-C-CcEEEEeCcchhhcCCc----chHHHHhhCCCEEEEecChhhcccccceeeeeeCCHHHHHHHHhccCCC-
Confidence 999885 4 68999999999987532 2222223357899999999999999999999999999999999887644
Q ss_pred CCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCC
Q 012095 333 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 412 (471)
Q Consensus 333 ~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~ 412 (471)
+.++++|.++..+|.++ ..++..+.++.++++|+.+.+.|++++|+....|.+|+|+|++++ +
T Consensus 250 -~~~~~~~~~a~~~l~~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~--------------~ 312 (364)
T PRK04781 250 -PVPTPCAALAEQALSAP--ALAVTARRVAEVRAERERLHAALAQLPGVRRVYPSQGNFLLVRFD--------------D 312 (364)
T ss_pred -CCCHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC--------------C
Confidence 57899999999999763 135666677788999999999999887875445778899999986 3
Q ss_pred HHHHHHHHHHcCCEEEECCCCCC-CCCcEEEEeecCHHHHHHHHHHHHHH
Q 012095 413 SESLCRYLLDKAQVALVPGDAFG-DDTCIRISYAASLTTLQAAVERIKKG 461 (471)
Q Consensus 413 ~~~l~~~Ll~~~gV~v~pg~~f~-~~~~iRis~~~~~e~i~~~~~~l~~~ 461 (471)
..++.+.|.+ +||.+.||..|+ .++|+||+++.. ++.+++++.|+++
T Consensus 313 ~~~~~~~l~~-~gI~v~~~~~~~~~~~~~Ris~~~~-~~~~~l~~al~~~ 360 (364)
T PRK04781 313 AEAAFQALLA-AGVVVRDQRAAPRLSDALRITLGTP-EQNDRVLAALQRT 360 (364)
T ss_pred HHHHHHHHHH-CCeEEeeCCCCCCCCCeEEEeCCCH-HHHHHHHHHHHHH
Confidence 5678887765 599999998764 468999999974 5666666666654
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=363.88 Aligned_cols=313 Identities=18% Similarity=0.276 Sum_probs=252.6
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 175 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l 175 (471)
.+|+|+.|++++... .....| |..-..+||++++++++ +++++|++|+|+++++..++. +
T Consensus 17 ~~i~l~~Nenp~~~~------------~~~~~Y-p~~~~~~lr~~ia~~~~------~~~~~I~it~Gs~~~l~~~~~-~ 76 (332)
T PRK06425 17 RIIDFSANINDFMDI------------GDISIY-PEISYTDIEDQIKIYTQ------GLKIKVLIGPGLTHFIYRLLS-Y 76 (332)
T ss_pred CEEEeccccCCCcCh------------hhcccC-cCcCHHHHHHHHHHHhC------CCcceEEECCCHHHHHHHHHH-H
Confidence 689999999988521 123568 66678999999999963 578999999999999999887 5
Q ss_pred cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHH
Q 012095 176 CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR 255 (471)
Q Consensus 176 ~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~ 255 (471)
++||+ |++++|+|+.|...++..|++++.+|++. +++|.+.+++ .++++|++||||||||.+++.+++++|++
T Consensus 77 ~~~~~-vv~~~P~y~~y~~~~~~~G~~v~~vp~~~---~~~~~~~l~~---~~~k~v~l~nP~NPTG~~~s~~~~~~l~~ 149 (332)
T PRK06425 77 INVGN-IIIVEPNFNEYKGYAFTHGIRISALPFNL---INNNPEILNN---YNFDLIFIVSPDNPLGNLISRDSLLTISE 149 (332)
T ss_pred hCCCc-EEEeCCChHHHHHHHHHcCCeEEEEeCCc---ccCcHHHHhh---cCCCEEEEeCCCCCcCCccCHHHHHHHHH
Confidence 67864 66779999999999999999999999864 3457666553 37899999999999999999999999999
Q ss_pred HHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCC
Q 012095 256 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA 335 (471)
Q Consensus 256 l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~ 335 (471)
+|++| +++||+||+|.++.+++. .+...+....+++|+++||||.||++|+|+||+++++++++.+.+....+. .
T Consensus 150 ~a~~~-~~~iI~DE~Y~~~~~~~~--~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~~li~~l~~~~~~~~--~ 224 (332)
T PRK06425 150 ICRKK-GALLFIDEAFIDFVPNRA--EEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDDYNMKISRKITEPWS--V 224 (332)
T ss_pred HHHHc-CCEEEEecchhccccccc--hhHHHHhccCCCEEEEeecHHhcCCchhhheeeecCHHHHHHHHHcCCCCc--c
Confidence 99999 999999999999987542 233344334579999999999999999999999999999999888654433 3
Q ss_pred ChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHH
Q 012095 336 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSES 415 (471)
Q Consensus 336 ~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (471)
+.+++ .++..+. .+.++++.++.|+++|+.+.+.|+++ |+.+..+.+|+|+|++++ ++.+
T Consensus 225 ~~~~~----~~l~~~~-~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~~g~f~~~~~~--------------~~~~ 284 (332)
T PRK06425 225 CDPAI----DFIRSID-LDYVAKHSLDIMENERSYLINNLEAM-GFRAAGDPSANFITFMIP--------------DAHD 284 (332)
T ss_pred CHHHH----HHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHC-CCEECCCCCceEEEEEcC--------------CHHH
Confidence 33332 2233211 25667888999999999999999988 888765556778999885 4678
Q ss_pred HHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHH
Q 012095 416 LCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGL 462 (471)
Q Consensus 416 l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~l 462 (471)
+++.|+++ ||.+.||..|+. ++|+||+++.. ++.+++++.|++++
T Consensus 285 ~~~~l~~~-gi~v~~~~~f~~~~~~~iRis~~~~-~~~~~l~~al~~~~ 331 (332)
T PRK06425 285 FYSYLLKN-GILVRLLDDYECLGEQYIRIAIRRR-SFNIKLVNALRNFL 331 (332)
T ss_pred HHHHHHHC-CeEEEECCCCCCCCCCEEEEEeCCH-HHHHHHHHHHHHHh
Confidence 99998875 999999999864 47999999975 57788888887764
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-45 Score=361.74 Aligned_cols=324 Identities=18% Similarity=0.293 Sum_probs=264.4
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHH
Q 012095 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 173 (471)
Q Consensus 94 g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~ 173 (471)
+.++++|+.|+|++++|+.+.+++.+.+.+ ..+|++..|..+||+++++++ | +++++|++|+|+++++..+++
T Consensus 21 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~aia~~~----~--~~~~~I~it~Ga~~al~~~~~ 93 (349)
T PRK07908 21 GPGLLDFAVNVRHDTPPEWLRERLAARLGD-LAAYPSTEDERRARAAVAARH----G--RTPDEVLLLAGAAEGFALLAR 93 (349)
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHHhhH-hhcCCCccchHHHHHHHHHHh----C--cChhhEEECCCHHHHHHHHHh
Confidence 567999999999999999999999988754 567987889999999999996 3 578999999999999998887
Q ss_pred HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHH
Q 012095 174 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 253 (471)
Q Consensus 174 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i 253 (471)
+++| .++++.|+|..+...++..|.+++.++++. +|.+|++.+ .+++++++++|||||||.++|.++ |
T Consensus 94 --l~~~-~viv~~P~y~~~~~~~~~~G~~i~~v~~~~--~~~~d~~~l----~~~~~~i~l~np~NPTG~~~~~~~---l 161 (349)
T PRK07908 94 --LRPR-RAAVVHPSFTEPEAALRAAGIPVHRVVLDP--PFRLDPAAV----PDDADLVVIGNPTNPTSVLHPAEQ---L 161 (349)
T ss_pred --cCCC-eEEEeCCCChHHHHHHHHcCCEEEeeccCc--ccCcChhHh----ccCCCEEEEcCCCCCCCCCcCHHH---H
Confidence 5675 567789999999999999999999999864 377898855 457899999999999999999665 5
Q ss_pred HHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccC
Q 012095 254 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 333 (471)
Q Consensus 254 ~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~ 333 (471)
.++|+ + +.++|+||+|.++..+ . ..++... ..+++++++||||.||++|+|+||+++++++++.+.+.... .
T Consensus 162 ~~l~~-~-~~~iIvDe~y~~~~~~-~-~~~l~~~--~~~~~i~i~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~--~ 233 (349)
T PRK07908 162 LALRR-P-GRILVVDEAFADAVPG-E-PESLAGD--DLPGVLVLRSLTKTWSLAGLRVGYALGAPDVLARLTRGRAH--W 233 (349)
T ss_pred HHHHh-c-CCEEEEECcchhhccC-C-ccccccc--cCCCEEEEeecccccCCccceeeeeecCHHHHHHHHhcCCC--C
Confidence 55565 4 5678889999987543 2 3344332 24689999999999999999999999999999998876554 3
Q ss_pred CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCH
Q 012095 334 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 413 (471)
Q Consensus 334 ~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~ 413 (471)
..+++.|.++..++... ...++++.+++++++|+++.+.|+++ |+++..|.+|+|+|++++ +.
T Consensus 234 ~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~p~~g~~~~~~~~--------------~~ 296 (349)
T PRK07908 234 PVGTLQLEAIAACCAPR--AVAEAAADAARLAADRAEMVAGLRAV-GARVVDPAAAPFVLVRVP--------------DA 296 (349)
T ss_pred CccHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHHHHHhC-CcEeccCCCceEEEEECC--------------cH
Confidence 46677777776666521 24788899999999999999999998 899888899999999986 23
Q ss_pred HHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012095 414 ESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLL 463 (471)
Q Consensus 414 ~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~l~ 463 (471)
.++.+.| +++||.+.||..|+. +++||||++. +++++++++.|++++.
T Consensus 297 ~~~~~~l-~~~gI~v~~g~~f~~~~~~~vRis~~~-~~~~~~l~~al~~~~~ 346 (349)
T PRK07908 297 ELLRKRL-RERGIAVRRGDTFPGLDPDYLRLAVRP-RAEVPVLVQALAEILK 346 (349)
T ss_pred HHHHHHH-HhCCEEEEECCCCCCCCCCeEEEEeCC-CccHHHHHHHHHHHHh
Confidence 4566655 556999999998853 6899999964 4677888888777653
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-45 Score=360.99 Aligned_cols=316 Identities=22% Similarity=0.344 Sum_probs=257.1
Q ss_pred cCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCC-CCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHH
Q 012095 93 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR-YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 171 (471)
Q Consensus 93 ~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~-Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~ 171 (471)
.|+++|+|+.|+|++++|+.+++++.+++..+..+ | +..|.++||+++++++++. + +++++|++|+|++++|..+
T Consensus 17 ~~~~~i~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~Y-~~~~~~~Lr~aia~~~~~~-~--~~~~~i~it~Ga~~~i~~~ 92 (335)
T PRK14808 17 EKRDRTYLALNENPFPFPEDLVDEVFRRLNSDTLRIY-YDSPDEELIEKILSYLDTD-F--LSKNNVSVGNGADEIIYVM 92 (335)
T ss_pred CCCceeEecCCCCCCCCCHHHHHHHHHHhhhhhhhcC-CCCChHHHHHHHHHHhCCC-C--CCcceEEEcCCHHHHHHHH
Confidence 45689999999999999999999998877544334 6 5569999999999999754 2 5889999999999999999
Q ss_pred HHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHH
Q 012095 172 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 251 (471)
Q Consensus 172 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~ 251 (471)
++++ |.|++++|+|+.|...++.+|++++.+|++. ++.++... + .++++++++|||||||.++++++++
T Consensus 93 ~~~~----d~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~----~-~~~~~i~i~nP~NPTG~~~s~~~l~ 161 (335)
T PRK14808 93 MLMF----DRSVFFPPTYSCYRIFAKAVGAKFLEVPLTK--DLRIPEVN----V-GEGDVVFIPNPNNPTGHVFEREEIE 161 (335)
T ss_pred HHHh----CcEEECCCCHHHHHHHHHHcCCeEEEecCCC--cCCCChhH----c-cCCCEEEEeCCCCCCCCCcCHHHHH
Confidence 9887 7899999999999999999999999999864 34444332 2 3578999999999999999988887
Q ss_pred HHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcc
Q 012095 252 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 331 (471)
Q Consensus 252 ~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~ 331 (471)
+|+ ++ +++||+||+|.+|. +....+.. ...+++++++||||.||++|+|+||+++++++++.+.+.+..
T Consensus 162 ~l~----~~-~~~ii~DE~Y~~f~--~~~~~~~~---~~~~~vi~~~S~SK~~~l~GlRvG~~v~~~~~~~~l~~~~~~- 230 (335)
T PRK14808 162 RIL----KT-GAFVALDEAYYEFH--GESYVDLL---KKYENLAVIRTFSKAFSLAAQRIGYVVSSEKFIDAYNRVRLP- 230 (335)
T ss_pred HHH----hc-CCEEEEECchhhhc--CCchHHHH---HhCCCEEEEEechhhccCcccceEEEEeCHHHHHHHHHhcCC-
Confidence 775 47 89999999999874 22111211 234689999999999999999999999999999999887643
Q ss_pred cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCC
Q 012095 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 411 (471)
Q Consensus 332 ~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~ 411 (471)
++.+.++|.++..++++ .++..+.++.++++|+.+.+.|+++ |+++.+|+|+ |+|+.++..
T Consensus 231 -~~~~~~~q~a~~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~g~-f~~~~l~~~------------ 291 (335)
T PRK14808 231 -FNVSYVSQMFAKVALDH----REIFEERTKFIVEERERMKSALREM-GYRITDSRGN-FVFIFMEKE------------ 291 (335)
T ss_pred -CCCCHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHHHHHHHHC-CCEECCCCCe-EEEEeCCCc------------
Confidence 55789999999888874 5677788888889999999999988 8888877665 579998742
Q ss_pred CHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHH
Q 012095 412 NSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 460 (471)
Q Consensus 412 ~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~ 460 (471)
+..++.++|.++ ||.|.. | .+++||+++.. ++.+++++.|++
T Consensus 292 ~~~~~~~~l~~~-Gi~V~~---~--~~~~Risi~~~-~~~~~~~~~l~~ 333 (335)
T PRK14808 292 EKERLLEHLRAK-NIAVRS---F--REGVRITIGKR-EENDMILKELEV 333 (335)
T ss_pred cHHHHHHHHHHC-CeEEEE---C--CCCeEEecCCH-HHHHHHHHHHHh
Confidence 567788877765 999985 3 47899998875 667777777764
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-45 Score=363.37 Aligned_cols=326 Identities=27% Similarity=0.455 Sum_probs=271.1
Q ss_pred cCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEE-eCChHHHHHHH
Q 012095 93 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILV-SNGAKQSILQA 171 (471)
Q Consensus 93 ~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~i-t~G~~~al~~~ 171 (471)
.+.++|+|+.|++++++++.+.+++.+.+.. ...|++. ...+||+++++++ | +++++|++ |+|+++++..+
T Consensus 32 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~~-~~~~lr~~ia~~~----~--~~~~~i~~~~~Ga~~~i~~~ 103 (361)
T PRK00950 32 DPESIIKLGSNENPLGPSPKAVEAIEKELSK-IHRYPEP-DAPELREALSKYT----G--VPVENIIVGGDGMDEVIDTL 103 (361)
T ss_pred CccceEEccCCCCCCCCCHHHHHHHHHHHHh-hcCCCCC-CHHHHHHHHHHHh----C--CCHHHEEEeCCCHHHHHHHH
Confidence 3457999999999999988899988877654 5668544 4589999999986 3 57889999 79999999999
Q ss_pred HHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHH
Q 012095 172 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 251 (471)
Q Consensus 172 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~ 251 (471)
+++++++||.|++++|+|+.|...++..|++++.++.+ ++|.+|++.+++.++++++++++++|+||||.+++.+
T Consensus 104 ~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~--- 178 (361)
T PRK00950 104 MRTFIDPGDEVIIPTPTFSYYEISAKAHGAKPVYAKRE--EDFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPEE--- 178 (361)
T ss_pred HHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecC--CCCCcCHHHHHHHhccCCCEEEEeCCCCCCCCCcCHH---
Confidence 99999999999999999999999999999999999854 4577999999999988899999999999999999955
Q ss_pred HHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcc
Q 012095 252 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 331 (471)
Q Consensus 252 ~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~ 331 (471)
++.++|+++ +++||+||+|.++. +.....+ ....+++++++||||.+|++|+|+||+++++++++.+.+....+
T Consensus 179 ~l~~l~~~~-~~~li~De~y~~~~--~~~~~~~---~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~ 252 (361)
T PRK00950 179 DIRKILEST-DALVFVDEAYVEFA--EYDYTPL---ALEYDNLIIGRTFSKVFGLAGLRIGYGFVPEWLIDYYMRAKTPF 252 (361)
T ss_pred HHHHHHHHC-CcEEEEECchhhhC--ccchHHH---HHhcCCEEEEEeehHhhcCchhhcchhcCCHHHHHHHHHhcCCC
Confidence 555667788 99999999999875 2111122 12347899999999999999999999999999999998876544
Q ss_pred cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCC
Q 012095 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 411 (471)
Q Consensus 332 ~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~ 411 (471)
+.+.+.|.++..+|.. .+++++.++.++++++.+.+.|. +.+ .|.+++|+|++++..
T Consensus 253 --~~~~~~~~~a~~~l~~----~~~~~~~~~~~~~~r~~l~~~l~----~~~-~~~~~~~i~~~~~~~------------ 309 (361)
T PRK00950 253 --SLTRLSQAAAIAALSD----KEYIEKSIEHGIKSREYLYNELP----FKV-YPSEANFVLVDVTPM------------ 309 (361)
T ss_pred --CCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHhhcC----eeE-CCCcceEEEEECCCC------------
Confidence 4778999999988874 67888889999999999988875 444 356778899998432
Q ss_pred CHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHH
Q 012095 412 NSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGL 462 (471)
Q Consensus 412 ~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~l 462 (471)
++.+++++|.++ ||.+.||..|+. ++++|++++ +.++++++++.|++++
T Consensus 310 ~~~~~~~~l~~~-gv~v~~~~~f~~~~~~~lRis~~-~~~~~~~l~~~L~~il 360 (361)
T PRK00950 310 TAKEFCEELLKR-GVIVRDCTSFRGLGDYYIRVSIG-TFEENERFLEILKEIV 360 (361)
T ss_pred CHHHHHHHHHHC-CEEEeeCCccCCCCCCeEEEECC-CHHHHHHHHHHHHHHh
Confidence 688999998875 999999998854 469999998 5578999999998875
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-45 Score=361.65 Aligned_cols=326 Identities=26% Similarity=0.443 Sum_probs=277.0
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHH
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~ 174 (471)
.++|+|++|++++++|+.+++++.++.. ...+|++..+ .++|++++++++ +++++|++|+|+++++..++++
T Consensus 19 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~-~~~~y~~~~~-~~lr~~ia~~~~------~~~~~i~~~~G~~~~l~~~~~~ 90 (346)
T TIGR01141 19 KEVIKLNSNENPFGPPPKAKEALRAEAD-KLHRYPDPDP-AELKQALADYYG------VDPEQILLGNGSDEIIELLIRA 90 (346)
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHhHH-HhhcCCCCCH-HHHHHHHHHHhC------cChHHEEEcCCHHHHHHHHHHH
Confidence 4799999999999999999999998764 3567866555 899999999974 4678999999999999999999
Q ss_pred hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHH
Q 012095 175 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 254 (471)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~ 254 (471)
++++||+|++++|+|+.|...++..|++++.++++.+ +.+|++++++++++++++|++++|+||||.+++.+++++++
T Consensus 91 l~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~l~ 168 (346)
T TIGR01141 91 FLEPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLDED--GQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIEAVL 168 (346)
T ss_pred hcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEeccCCC--CCCCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 9999999999999999998889999999999998643 66899999999888899999999999999999999999999
Q ss_pred HHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCC
Q 012095 255 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 334 (471)
Q Consensus 255 ~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~ 334 (471)
+.++ + ++++|+||+|..+.+.+. ..... ...+++++++||||.+|++|+|+||+++++++++++...... ++
T Consensus 169 ~~~~-~-~~~ii~D~~y~~~~~~~~-~~~~~---~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~--~~ 240 (346)
T TIGR01141 169 ERTP-E-DALVVVDEAYGEFSGEPS-TLPLL---AEYPNLIVLRTLSKAFGLAGLRIGYAIANAEIIDALNKVRAP--FN 240 (346)
T ss_pred HhCC-C-CcEEEEECchhhhcCCcc-HHHHH---hhCCCEEEEehhhHhhhchhhhceeeecCHHHHHHHHhccCC--CC
Confidence 9987 7 899999999997654321 11111 123578999999999999999999999999999998876543 45
Q ss_pred CChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHH
Q 012095 335 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSE 414 (471)
Q Consensus 335 ~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (471)
.++++|.++..++.. ..++++.++.++++++.+.+.|.+++|+++. |.+++|+|++++. ++.
T Consensus 241 ~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~g~~~~~~~~~-------------~~~ 302 (346)
T TIGR01141 241 LSRLAQAAAIAALRD----DDFIEKTVEEINAERERLYDGLKKLPGLEVY-PSDANFVLIRFPR-------------DAD 302 (346)
T ss_pred CCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEC-CCcCCEEEEecCC-------------CHH
Confidence 789999999888875 4578889999999999999999988888865 5567889998863 467
Q ss_pred HHHHHHHHcCCEEEECCCCCCC-CCcEEEEeecCHHHHHHHHHHH
Q 012095 415 SLCRYLLDKAQVALVPGDAFGD-DTCIRISYAASLTTLQAAVERI 458 (471)
Q Consensus 415 ~l~~~Ll~~~gV~v~pg~~f~~-~~~iRis~~~~~e~i~~~~~~l 458 (471)
+++++|.++ ||.+.||..|+. ++++|+|++ ++++++++++.|
T Consensus 303 ~~~~~L~~~-gI~v~~g~~f~~~~~~iRls~~-~~~~i~~~~~~l 345 (346)
T TIGR01141 303 ALFEALLEK-GIIVRDLNSYPGLPNCLRITVG-TREENDRFLAAL 345 (346)
T ss_pred HHHHHHHHC-CeEEEeCCCcCCCCCeEEEecC-CHHHHHHHHHHh
Confidence 889888765 999999998854 689999988 678888888776
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-45 Score=362.24 Aligned_cols=320 Identities=23% Similarity=0.368 Sum_probs=261.0
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHH
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~ 174 (471)
.+.|+|+.|++++++|+.+ .. .....| |..+..+||+++++++ | +++++|++|+|++++|..++++
T Consensus 31 ~~~~~l~~ne~~~~~~~~~------~~-~~~~~Y-p~~~~~~Lr~aia~~~----~--~~~~~I~it~Gs~~~i~~~~~~ 96 (354)
T PRK04635 31 RGDIWINANESPFNNEYKL------DL-ARLNRY-PECQPPELINAYSAYA----G--VAPEQILTSRGADEAIELLIRA 96 (354)
T ss_pred CCcEEeeCCCCCCCCChhh------hh-HHhccC-CCCCHHHHHHHHHHHh----C--cCHHHEEEeCCHHHHHHHHHHH
Confidence 4579999999999988643 11 134678 4556899999999985 4 5889999999999999999999
Q ss_pred hcCCC-CeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHH
Q 012095 175 VCSPG-DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 253 (471)
Q Consensus 175 l~~~g-d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i 253 (471)
+++|| |+|++++|+|+.|...++..|++++.+|++. +|.+|++.+++ + +++|+|++||||||||.+++.+++++|
T Consensus 97 ~~~~g~d~vlv~~P~y~~y~~~~~~~g~~v~~v~~~~--~~~~~~~~l~~-~-~~~~li~i~nP~NPTG~~~~~~~l~~l 172 (354)
T PRK04635 97 FCEPGQDSIACFGPTYGMYAISAETFNVGVKALPLTA--DYQLPLDYIEQ-L-DGAKLVFICNPNNPTGTVIDRADIEQL 172 (354)
T ss_pred hcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCC--CCCCCHHHHHh-c-cCCCEEEEeCCCCCCCccCCHHHHHHH
Confidence 99999 9999999999999999999999999999863 47789999874 4 689999999999999999998888888
Q ss_pred HHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccC
Q 012095 254 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 333 (471)
Q Consensus 254 ~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~ 333 (471)
++.|+ +++||+||+|.++... .+...+....+++++++||||.||++|+|+||+++++++++.+.+.... +
T Consensus 173 ~~~~~---~~~vivDeay~~~~~~----~s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~~~~~~~l~~~~~~--~ 243 (354)
T PRK04635 173 IEMTP---DAIVVVDEAYIEFCPE----YSVADLLASYPNLVVLRTLSKAFALAGARCGFTLANEELIEILMRVIAP--Y 243 (354)
T ss_pred HHhCC---CcEEEEeCchHhhccC----cchHHHHhhCCCEEEEechHHHhhhhHHHHhhhhCCHHHHHHHHhhcCC--C
Confidence 88763 5899999999987532 1222332335789999999999999999999999999999998876543 4
Q ss_pred CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCH
Q 012095 334 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 413 (471)
Q Consensus 334 ~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~ 413 (471)
+.+.+.|.++.++|.+. ..+++++.++.++++|+.+.+.|++++++.+.+++| .|+|++++ +.
T Consensus 244 ~~~~~~~~~a~~~l~~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g-~f~~~~~~--------------~~ 306 (354)
T PRK04635 244 PVPLPVSEIATQALSEA--GLARMKFQVLDLNAQGARLQAALSMYGGAKVLEGNG-NYVLAKFD--------------DV 306 (354)
T ss_pred CCCHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHHHhCCCceECCCCC-cEEEEECC--------------CH
Confidence 57888898998888752 245677888899999999999999986688777764 57888875 35
Q ss_pred HHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHH
Q 012095 414 ESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 460 (471)
Q Consensus 414 ~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~ 460 (471)
.++.+.|. ++||.+.++..++.++++|||++ +.++++.+++.|++
T Consensus 307 ~~~~~~l~-~~gv~v~~~~~~~~~~~lRis~~-~~e~~~~l~~al~~ 351 (354)
T PRK04635 307 DAVFKALW-DAGIVARAYKDPRLANCIRFSFS-NRAETDKLIGLIRN 351 (354)
T ss_pred HHHHHHHH-HCCEEEEECCCCCCCCeEEEEeC-CHHHHHHHHHHHHH
Confidence 67777665 55999988765556789999987 45788888888765
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=358.04 Aligned_cols=328 Identities=26% Similarity=0.424 Sum_probs=270.1
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 175 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l 175 (471)
++|+|+.|++++++|+.+.+++.+.+. ....| |..|..++|++++++++ +++++|++|+|+++++..++..+
T Consensus 23 ~~i~l~~~~~~~~~~~~~~~a~~~~~~-~~~~y-~~~g~~~lr~~ia~~~~------~~~~~I~~~~G~~~~l~~~~~~~ 94 (352)
T PRK03321 23 GAIKLSSNETPFGPLPSVRAAIARAAA-GVNRY-PDMGAVELRAALAEHLG------VPPEHVAVGCGSVALCQQLVQAT 94 (352)
T ss_pred cceeccCCCCCCCCCHHHHHHHHHHHH-hcCcC-CCCcHHHHHHHHHHHhC------cCHHHEEECCCHHHHHHHHHHHh
Confidence 589999999999888899999988765 35667 67899999999999973 57789999999999999999999
Q ss_pred cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHH
Q 012095 176 CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR 255 (471)
Q Consensus 176 ~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~ 255 (471)
++|||+|+++.|+|..|...++..|++++.++++++ +.+|++.++++++++++++++++||||||.+++.+++.++++
T Consensus 95 ~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~ 172 (352)
T PRK03321 95 AGPGDEVIFAWRSFEAYPILVQVAGATPVQVPLTPD--HTHDLDAMAAAITDRTRLIFVCNPNNPTGTVVTPAELARFLD 172 (352)
T ss_pred cCCCCEEEeCCCCHHHHHHHHHHcCCEEEEccCCCC--CCCCHHHHHHhhccCCCEEEEeCCCCCcCCCcCHHHHHHHHH
Confidence 999999999999999999899999999999998643 568999999999889999999999999999999888888877
Q ss_pred HHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCC
Q 012095 256 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA 335 (471)
Q Consensus 256 l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~ 335 (471)
.+ ++ +++||+||+|.++.+++....++..+. ..+++++++||||.||++|+|+||+++++++++.+.+.. ...+.
T Consensus 173 ~~-~~-~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~--~~~~~ 247 (352)
T PRK03321 173 AV-PA-DVLVVLDEAYVEYVRDDDVPDGLELVR-DHPNVVVLRTFSKAYGLAGLRVGYAVGHPEVIAALRKVA--VPFSV 247 (352)
T ss_pred hC-CC-CeEEEEechHHHhccCcCCCcHHHHHh-hCCCEEEEecchHHhhhHHHhhhhhcCCHHHHHHHHHhc--CCCCC
Confidence 65 46 899999999999988653322222232 247899999999999999999999999999999998764 34568
Q ss_pred ChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHH
Q 012095 336 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSES 415 (471)
Q Consensus 336 ~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (471)
+.++|.++.++|.. ...+. +..+.+.++++.+.+.|.+. |+.+.+ .+|+|+|++++. ++.+
T Consensus 248 s~~~q~~a~~~l~~---~~~~~-~~~~~~~~~r~~~~~~L~~~-~~~~~~-~~g~~i~i~l~~-------------~~~~ 308 (352)
T PRK03321 248 NSLAQAAAIASLAA---EDELL-ERVDAVVAERDRVRAALRAA-GWTVPP-SQANFVWLPLGE-------------RTAD 308 (352)
T ss_pred CHHHHHHHHHHhcC---HHHHH-HHHHHHHHHHHHHHHHHHHC-CCccCC-CCCCEEEEeCCC-------------CHHH
Confidence 99999999888874 23444 44455556677888999887 776644 457889998852 5678
Q ss_pred HHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012095 416 LCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLL 463 (471)
Q Consensus 416 l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~ 463 (471)
+++.|.+ +||.+.+ |+ ++++||+++ +.+++++++++|++++.
T Consensus 309 ~~~~l~~-~gI~v~~---~~-~~~iRi~~~-~~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 309 FAAAAAE-AGVVVRP---FA-GEGVRVTIG-APEENDAFLRAARAWRA 350 (352)
T ss_pred HHHHHHH-CCEEEEc---cC-CCcEEEeeC-CHHHHHHHHHHHHHHhc
Confidence 9998755 5999987 43 457999986 44788899998888754
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-44 Score=338.24 Aligned_cols=332 Identities=23% Similarity=0.394 Sum_probs=287.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHH-cCCE
Q 012095 126 TRYTPNAGTLELRSAICHKLKEENG--LSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI-ADAT 202 (471)
Q Consensus 126 ~~Y~~~~G~~~lr~~ia~~~~~~~g--~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~-~G~~ 202 (471)
..|.+..|.+++|+++|+++.+..| +.++|+++++++|++.+...++-+|++|||.-|+|.|+|+++..-++. .|++
T Consensus 115 a~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl~~rTgve 194 (471)
T KOG0256|consen 115 AMFQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRDLRWRTGVE 194 (471)
T ss_pred hhcccccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCcccccceeccCce
Confidence 4687889999999999999987766 457899999999999999999999999999999999999999866654 5899
Q ss_pred EEEecCCCCCCCcCCHHHHHhhhcc------CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCcccc
Q 012095 203 PVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 276 (471)
Q Consensus 203 ~~~v~~~~~~~~~ld~e~l~~~l~~------~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~ 276 (471)
+++|.+..+++|+++++++|+++.+ +.|.++|.||+||-|.+++++++..+++++.++ ++.||+||+|..-+|
T Consensus 195 ivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~k-niHvI~DEIya~sVF 273 (471)
T KOG0256|consen 195 IVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRK-NIHVISDEIYAGSVF 273 (471)
T ss_pred EEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhc-ceEEEeehhhccccc
Confidence 9999999999999999999998853 678999999999999999999999999999999 999999999999999
Q ss_pred CCCCccccccCCC----CCCceEEEecCCcccCccchhheeeEc-CHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccC
Q 012095 277 APATHTSFASLPG----MWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGY 351 (471)
Q Consensus 277 ~~~~~~~~~~~~~----~~~~~i~~~S~SK~~g~~G~R~G~v~~-~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~ 351 (471)
+.....++.++.. ..+++-++.|+||-||+||+|+|.++. +++++.+..+..+.. ..++..|..+...|.+.+
T Consensus 274 ~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kmssf~--~vSs~tQ~~la~LLSD~~ 351 (471)
T KOG0256|consen 274 DKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMSSFG--LVSSQTQYLLASLLSDEE 351 (471)
T ss_pred CccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHhhcc--CCcHHHHHHHHHHhchHH
Confidence 8776666655321 457899999999999999999999996 667888877766533 478999999999999755
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECC
Q 012095 352 AGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG 431 (471)
Q Consensus 352 ~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg 431 (471)
..+.++++...+++.+.+++.+.|+++ |+.+.+.++|+|+|+++.+...... + +...++.++++++-++.+.||
T Consensus 352 f~~~yl~en~~Rl~~rh~~~~~gLk~l-gI~cl~s~AGlF~wvDlr~lL~s~t--f---e~El~Lw~~i~~~vklnlSpG 425 (471)
T KOG0256|consen 352 FTREYLRENNKRLRIRHRYIVEGLKAL-GIPCLKSNAGLFCWVDLRKLLTSLT--F---EGELELWERILDNVKLNLSPG 425 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhc-CCceeecCCeeEEEEEhHHhcCcCC--h---HHHHHHHHHHHHhhccccCCC
Confidence 446778899999999999999999999 9999999999999999987653211 1 245688899998889999999
Q ss_pred CCCC--CCCcEEEEeec-CHHHHHHHHHHHHHHHHhhC
Q 012095 432 DAFG--DDTCIRISYAA-SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 432 ~~f~--~~~~iRis~~~-~~e~i~~~~~~l~~~l~~~~ 466 (471)
+.|. .+||+|++|+. .++.++-+++||++++....
T Consensus 426 ~s~~C~EpGWFRvcFAn~~~~t~~~am~Ri~~~~~~~~ 463 (471)
T KOG0256|consen 426 SSCHCHEPGWFRVCFANMSEETLEVAMRRLKQFLDSQV 463 (471)
T ss_pred CcceecCCCeEEEEeccCCHHHHHHHHHHHHHHHHhhh
Confidence 9986 46999999999 65666669999999987544
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-44 Score=352.81 Aligned_cols=311 Identities=18% Similarity=0.213 Sum_probs=251.6
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 175 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l 175 (471)
++|+|+.|++++++|+....+ .. ...| |... .+||+++++++ |++ ++++|++|+|++++|..+.. +
T Consensus 25 ~~i~ls~Nenp~~~~~~~~~~--~~----~~~Y-p~~~-~~L~~~ia~~~----~~~-~~~~I~i~~Gs~e~i~~l~~-~ 90 (339)
T PRK06959 25 AWLDLSTGINPHGYPVPPVPA--DA----WRRL-PEDD-DGLAACAARYY----GAP-DAAHVLPVAGSQAAIRALPA-L 90 (339)
T ss_pred hhceeccCCCCCCCCCCCCCH--HH----HHhC-CCch-HHHHHHHHHHh----CCC-CcccEEECcCHHHHHHHHHH-h
Confidence 479999999998876222111 12 2357 5544 89999999886 542 45899999999999996654 5
Q ss_pred cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHH
Q 012095 176 CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR 255 (471)
Q Consensus 176 ~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~ 255 (471)
+++|| |++++|+|+.|...++..|++++.++.+. +.+ .+.++++++||||||||.+++.+++++|++
T Consensus 91 ~~~g~-v~v~~P~y~~y~~~~~~~g~~~~~v~~~~--------~~~----~~~~~~v~l~nPnNPTG~~~s~~~l~~l~~ 157 (339)
T PRK06959 91 LPRGR-VGIAPLAYSEYAPAFARHGHRVVPLDEAA--------DTL----PAALTHLIVVNPNNPTAERLPAARLLRWHA 157 (339)
T ss_pred cCCCe-EEEcCCCcHHHHHHHHHCCCEEEeecccc--------hhc----cccCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 78887 88999999999999999999999988642 222 234578999999999999999999999999
Q ss_pred HHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCC
Q 012095 256 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA 335 (471)
Q Consensus 256 l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~ 335 (471)
.|+++ +.+||+||+|.++.+. .++..+.. .+++|+++||||.||++|+|+||+++++++++.+.+....+ +.
T Consensus 158 ~~~~~-~~~vI~DEay~~~~~~----~s~~~~~~-~~~vi~l~SfSK~~gl~GlRiGy~v~~~~li~~l~~~~~~~--~v 229 (339)
T PRK06959 158 QLAAR-GGTLIVDEAFADTLPA----ASLAAHTD-RPGLVVLRSVGKFFGLAGVRAGFVLAAPALLAALRDALGAW--TV 229 (339)
T ss_pred HHHHc-CCEEEEECCCccCCCc----ccchhccC-CCCEEEEecChhhcCCcchheEEEecCHHHHHHHHHhcCCC--CC
Confidence 99988 8899999999997642 33434332 47799999999999999999999999999999999887654 47
Q ss_pred ChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHH
Q 012095 336 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSES 415 (471)
Q Consensus 336 ~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (471)
+.++|.++.++|.+ .++.++.++.++++|+++.+.|+++ |+.+. .+++|+|++++ +..+
T Consensus 230 s~~~q~a~~~~L~~----~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~--~~~~f~~~~~~--------------~~~~ 288 (339)
T PRK06959 230 SGPARHAVRAAFAD----AAWQAAMRERLAADGARLAALLRAH-GFAVH--ATPLFSWTDDP--------------RAAA 288 (339)
T ss_pred cHHHHHHHHHHhCc----HHHHHHHHHHHHHHHHHHHHHHHHC-CCCcc--CcceEEEEeCC--------------CHHH
Confidence 88999999999974 6788899999999999999999998 77665 35788999875 4567
Q ss_pred HHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012095 416 LCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 416 l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~~~~ 466 (471)
+.+.|.++ ||.+.. |+..+|+||+++.+.++++++++.|+++++.+.
T Consensus 289 l~~~l~~~-GI~vr~---~~~~~~lRisi~~~~~e~~~l~~al~~~~~~~~ 335 (339)
T PRK06959 289 LHAALARR-GIWTRY---FAPPPSVRFGLPADEAEWQRLEDALAECVPTLA 335 (339)
T ss_pred HHHHHHhC-CeEEEE---CCCCCeEEEECCCCHHHHHHHHHHHHHHHHHHh
Confidence 88888766 999974 455679999997777888899988888776543
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=348.75 Aligned_cols=305 Identities=18% Similarity=0.231 Sum_probs=245.5
Q ss_pred CeEEcCCCCCCCCCh-HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHH
Q 012095 96 SVIRLAAGEPDFDTP-VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p-~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~ 174 (471)
++|+|+.|++++++| +.+.+ ..+ ..| |. +..+||++|++++ .+++|++|+|++++|..++
T Consensus 21 ~~i~l~~ne~p~~~~~~~~~~---~~~----~~y-p~-~~~~Lr~~ia~~~--------~~~~I~it~Gs~~al~~~~-- 81 (330)
T PRK05664 21 DWLDLSTGIAPWPWPVPAIPA---DAW----ARL-PE-TDDGLEAAARAYY--------GAPQLLPVAGSQAAIQALP-- 81 (330)
T ss_pred HheeecCCcCCCCCCCcccCH---HHH----HhC-CC-ChHHHHHHHHHHh--------CCCCEEECcCHHHHHHHHH--
Confidence 579999998777654 33322 122 247 43 3489999999996 3479999999999999775
Q ss_pred hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHH
Q 012095 175 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 254 (471)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~ 254 (471)
.+.+||+|++++|+|+.|...++..|++++.+|++ ++++++ +++++++++|||||||.+++.+++++|+
T Consensus 82 ~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~v~~~----------~~~~~~-~~~~~v~l~nP~NPTG~~~s~~~l~~l~ 150 (330)
T PRK05664 82 RLRAPGRVGVLSPCYAEHAHAWRRAGHQVRELDEA----------EVEAAL-DSLDVLVVVNPNNPTGRRFDPARLLAWH 150 (330)
T ss_pred HccCCCEEEEcCCChHHHHHHHHHcCCeEEEechh----------hHhhhh-cCCCEEEEeCCcCCCCCccCHHHHHHHH
Confidence 35899999999999999999999999999998753 344444 3678899999999999999999999999
Q ss_pred HHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCC
Q 012095 255 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 334 (471)
Q Consensus 255 ~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~ 334 (471)
++|+++ +++||+||+|.++. + ..++..+.. .+++++++||||.||++|+|+||+++++++++.+.+....+ +
T Consensus 151 ~~~~~~-~~~iI~DE~y~~~~--~--~~s~~~~~~-~~~vi~~~SfSK~~gl~GlRiG~~v~~~~l~~~~~~~~~~~--~ 222 (330)
T PRK05664 151 ARLAAR-GGWLVVDEAFMDNT--P--QHSLAACAH-RPGLIVLRSFGKFFGLAGARLGFVLAEPALLRALAELLGPW--T 222 (330)
T ss_pred HHHHhc-CCEEEEECCcccCC--C--ccccccccc-CCCEEEEeeccccccCCCcceEEEEeCHHHHHHHHHhcCCC--C
Confidence 999999 99999999998753 1 234455543 57899999999999999999999999999999998876543 4
Q ss_pred CChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcc--eEEeEecCCccCCcccCCCCCCC
Q 012095 335 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGA--FYLFIDFSTYYGSEAEGFGKIEN 412 (471)
Q Consensus 335 ~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g--~~~~~~~~~~~~~~~~~~~~~~~ 412 (471)
.+.+.|.++..+|.+ ..+.++.++.++++|+++.+.|+++ |+. |.++ +|+|++++ +
T Consensus 223 ~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~r~~l~~~L~~~-~~~---~~~~~~~f~~~~~~--------------~ 280 (330)
T PRK05664 223 VSGPTRWLAQAALAD----TPWQRRQRERLLAASQRLAALLRRH-GLT---PAGGCALFQWVRTE--------------D 280 (330)
T ss_pred CCHHHHHHHHHHHhC----hHHHHHHHHHHHHHHHHHHHHHHHC-CCc---ccCCcceEEEEecC--------------C
Confidence 678999999999985 4667888999999999999999987 664 4444 77888764 5
Q ss_pred HHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012095 413 SESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 413 ~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~~ 464 (471)
+.++.+.|.++ ||.+.+ |+.++++||+++.+.++++++++.|+++.++
T Consensus 281 ~~~~~~~l~~~-gi~v~~---f~~~~~iRis~~~~~~~~~~l~~al~~~~~~ 328 (330)
T PRK05664 281 AAALHEFLARR-GILTRL---FEQPASLRFGLPADEADWARLDQALLAYRKE 328 (330)
T ss_pred HHHHHHHHHHC-CeEEEE---CCCCCeEEEECCCCHHHHHHHHHHHHHHHhh
Confidence 67888887655 999974 5566899999997667777777777666543
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-43 Score=348.29 Aligned_cols=318 Identities=22% Similarity=0.371 Sum_probs=257.0
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHH
Q 012095 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 172 (471)
Q Consensus 94 g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~ 172 (471)
+.+.|+|+.|++++++|+.+.+++.+++.. ...+| |..|.++||++++++++ +++++|++|+|+++++..++
T Consensus 17 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y-~~~g~~~lr~~ia~~~~------~~~~~I~~t~G~~~~l~~~~ 89 (337)
T PRK03967 17 GNYRIWLDKNENPFDLPEELKEEIFEELKRVPFNRY-PHITSDPLREAIAEFYG------LDAENIAVGNGSDELISYLV 89 (337)
T ss_pred CCceEEecCCCCCCCCCHHHHHHHHHHhhcCccccC-CCCCHHHHHHHHHHHhC------cCcceEEEcCCHHHHHHHHH
Confidence 346899999999998889999999988754 45778 56799999999999973 58899999999999999888
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHH
Q 012095 173 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 252 (471)
Q Consensus 173 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~ 252 (471)
..+ +||+|++++|+|+.|...++..|++++.++++. +|.+|++.+++.+ ++++++++++||||||.+++.+++.+
T Consensus 90 ~~~--~gd~V~v~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~~-~~~~~v~~~~P~NPtG~~~~~~~l~~ 164 (337)
T PRK03967 90 KLF--EGKHIVITPPTFGMYSFYAKLNGIPVIDVPLKE--DFTIDGERIAEKA-KNASAVFICSPNNPTGNLQPEEEILK 164 (337)
T ss_pred HHh--CCCeEEEeCCChHHHHHHHHHcCCeEEEeecCC--CCCcCHHHHHHhc-cCCCEEEEeCCCCCCCCCCCHHHHHH
Confidence 766 799999999999999998999999999999863 4779999998865 57889999999999999999766655
Q ss_pred HHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhccc
Q 012095 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 332 (471)
Q Consensus 253 i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~ 332 (471)
+ + ++ +++||+||+|.++... .. ..+....+++|+++||||.||++|+|+||+++++++++.+.+....+
T Consensus 165 i---~-~~-~~~ii~De~y~~~~~~--~~---~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~~~i~~~~~~~~~~- 233 (337)
T PRK03967 165 V---L-ET-GKPVVLDEAYAEFSGK--SL---IGLIDEYPNLILLRTFSKAFGLAGIRAGYAIANEEIIDALYRIKPPF- 233 (337)
T ss_pred H---H-hc-CCEEEEECchhhhccc--ch---HHHHhhCCCEEEEecchHhhcchhhhheeeecCHHHHHHHHhhcCCC-
Confidence 4 4 47 8999999999987521 11 11112246899999999999999999999999999999998876543
Q ss_pred CCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCC
Q 012095 333 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 412 (471)
Q Consensus 333 ~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~ 412 (471)
+.+.++|.++..+|.+ .++..+.++.+.++|+.+.+.|.+. ..|.+++|+|++++
T Consensus 234 -~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~-----~~~~~~~~~~~~~~--------------- 288 (337)
T PRK03967 234 -SLNILTMKIVRLALDH----YDLIEERIDYIIKERERVRRELGEY-----AYPSDANFLLLKLD--------------- 288 (337)
T ss_pred -CCCHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHHHHHhccC-----cCCCCCcEEEEhHH---------------
Confidence 5789999999999974 4567666677778888888888764 24678999998652
Q ss_pred HHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhh
Q 012095 413 SESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 413 ~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~~~ 465 (471)
+.+.|+++ ||.+.++.. ..++++||+++.. ++.+++++.|+++.+.+
T Consensus 289 ---~~~~l~~~-gi~v~~~~~-~~~~~~Ri~~~~~-~~~~~l~~~l~~~~~~~ 335 (337)
T PRK03967 289 ---AYDYLLEN-GIVVRKLSG-RLEGHIRVTVGKR-EENDEFIKALKEIKEGY 335 (337)
T ss_pred ---HHHHHHHC-CEEEEeCCC-CCCCeEEEecCCH-HHHHHHHHHHHHHHHhc
Confidence 56777765 999998753 3467999999873 45566666666665543
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-43 Score=345.78 Aligned_cols=320 Identities=22% Similarity=0.328 Sum_probs=262.0
Q ss_pred HHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChH
Q 012095 86 QATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165 (471)
Q Consensus 86 ~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~ 165 (471)
.++++..++++.++|+.|.|++++| ..+.. .+...+|++..+ ++||+.+++++ | +++++|++|+|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~y~~~~~-~~lr~~la~~~----~--~~~~~i~~t~G~~ 74 (330)
T TIGR01140 8 AAARYGIPPEDWLDFSTGINPLGPP--VPPIP----ASAWARYPDPEY-DELRAAAAAYY----G--LPAASVLPVNGAQ 74 (330)
T ss_pred HHHHcCCChhheeEccccCCCCCCC--hhhcc----hHHHhhCCCccH-HHHHHHHHHHh----C--CChhhEEECCCHH
Confidence 3444445567899999999888776 22211 123467865555 99999999986 3 4689999999999
Q ss_pred HHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCC
Q 012095 166 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245 (471)
Q Consensus 166 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~ 245 (471)
+++..+..+ +.+| .|++++|+|..|...++..|.+++.++ |++.+++.+ ++++++++++||||||.++
T Consensus 75 ~~i~~~~~~-l~~g-~vl~~~p~y~~~~~~~~~~g~~~~~~~---------d~~~l~~~~-~~~~~v~i~~p~NPtG~~~ 142 (330)
T TIGR01140 75 EAIYLLPRL-LAPG-RVLVLAPTYSEYARAWRAAGHEVVELP---------DLDRLPAAL-EELDVLVLCNPNNPTGRLI 142 (330)
T ss_pred HHHHHHHHH-hCCC-eEEEeCCCcHHHHHHHHHcCCEEEEeC---------CHHHHHhhc-ccCCEEEEeCCCCCCCCCC
Confidence 999987665 5778 699999999999999999999998886 788898888 4678899999999999999
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHH
Q 012095 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 325 (471)
Q Consensus 246 ~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~ 325 (471)
+.+++++|+++|++| |++||+||+|.++.+.. ++..+....+++|+++||||.+|++|+|+||+++++++++.+.
T Consensus 143 ~~~~~~~l~~~a~~~-~~~ii~De~y~~~~~~~----~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~l~ 217 (330)
T TIGR01140 143 PPETLLALAARLRAR-GGWLVVDEAFIDFTPDA----SLAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHPALLARLR 217 (330)
T ss_pred CHHHHHHHHHHhHhc-CCEEEEECcccccCCcc----chhhHhccCCCEEEEEecchhhcCchhhhhheeCCHHHHHHHH
Confidence 999999999999999 99999999999876531 2222222357899999999999999999999999999999988
Q ss_pred HHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCccc
Q 012095 326 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAE 405 (471)
Q Consensus 326 ~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~ 405 (471)
..... .+.+.++|.++..+++. ..|.++.++.++++++.+.+.|++++++++. |.+++|+|++++
T Consensus 218 ~~~~~--~~~s~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~f~~~~~~-------- 282 (330)
T TIGR01140 218 EALGP--WTVNGPARAAGRAALAD----TAWQAATRARLAAERARLAALLARLGGLEVV-GGTALFLLVRTP-------- 282 (330)
T ss_pred hcCCC--CCchHHHHHHHHHHHhc----hHHHHHHHHHHHHHHHHHHHHHHhCCCceEC-CCCCeEEEEEcC--------
Confidence 87643 45788999999999984 5778888999999999999999998546654 567899999875
Q ss_pred CCCCCCCHHHHHHHHHHcCCEEEECCCCCC--CCCcEEEEeecCHHHHHHHHHHH
Q 012095 406 GFGKIENSESLCRYLLDKAQVALVPGDAFG--DDTCIRISYAASLTTLQAAVERI 458 (471)
Q Consensus 406 ~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~--~~~~iRis~~~~~e~i~~~~~~l 458 (471)
+..+++++|+++ ||.+.||..|+ ..+++|++++...++ ++++.+|
T Consensus 283 ------~~~~l~~~l~~~-gi~v~pg~~f~~~~~~~iRi~~~~~~~~-~~~~~~l 329 (330)
T TIGR01140 283 ------DAAALHEALARR-GILIRDFDNFPGLDPRYLRFALPTDEEN-DRLEEAL 329 (330)
T ss_pred ------CHHHHHHHHHHC-CEEEEECCCCCCCCCCEEEEEecCHHHH-HHHHHhh
Confidence 456899998875 99999999995 347999999986555 7766655
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=338.37 Aligned_cols=299 Identities=20% Similarity=0.336 Sum_probs=234.3
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 175 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l 175 (471)
++|+|+.|+++++ |+.+.+++.+++.. ...| |. ...||+++++++ | ++|++|+|+++++..++..+
T Consensus 9 ~~i~l~~~~np~~-p~~~~~a~~~~~~~-~~~y-p~--~~~l~~~ia~~~----~-----~~I~vt~G~~~al~~~~~~~ 74 (311)
T PRK08354 9 GLIDFSASVNPYP-PEWLDEMFERAKEI-SGRY-TY--YEWLEEEFSKLF----G-----EPIVITAGITEALYLIGILA 74 (311)
T ss_pred ceeEecCCCCCCC-CHHHHHHHHHHHHH-hhcC-CC--hHHHHHHHHHHH----C-----CCEEECCCHHHHHHHHHHhh
Confidence 5899999998886 57888888877543 4567 32 467899888875 3 47999999999999877544
Q ss_pred cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHH
Q 012095 176 CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR 255 (471)
Q Consensus 176 ~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~ 255 (471)
.+||+|++++|+|+.|...++..|++++.++ +|++.+++.++ ++++++++|||||||.+++.+++++|++
T Consensus 75 -~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~--------~d~~~l~~~~~-~~~~vi~~~P~NPTG~~~~~~~l~~l~~ 144 (311)
T PRK08354 75 -LRDRKVIIPRHTYGEYERVARFFAARIIKGP--------NDPEKLEELVE-RNSVVFFCNPNNPDGKFYNFKELKPLLD 144 (311)
T ss_pred -CCCCeEEEeCCCcHHHHHHHHHcCCEEeecC--------CCHHHHHHhhc-CCCEEEEecCCCCCCCccCHHHHHHHHH
Confidence 5999999999999999999999999997653 58889988876 5788999999999999999999999999
Q ss_pred HHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCC
Q 012095 256 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA 335 (471)
Q Consensus 256 l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~ 335 (471)
+|++| +++||+||+|.+|.+++. . .. .+++++++||||.||++|+|+||+++ +++.+.+....+. .
T Consensus 145 ~a~~~-~~~li~De~y~~f~~~~~-~-----~~--~~~vi~~~S~SK~~~l~GlRiG~~v~---~~~~l~~~~~~~~--~ 210 (311)
T PRK08354 145 AVEDR-NALLILDEAFIDFVKKPE-S-----PE--GENIIKLRTFTKSYGLPGIRVGYVKG---FEEAFRSVRMPWS--I 210 (311)
T ss_pred Hhhhc-CcEEEEeCcchhcccccc-c-----cC--CCcEEEEeccHhhcCCccceeeeeee---hHHHHHHcCCCcc--C
Confidence 99999 999999999999987642 1 11 57899999999999999999999998 5666666554433 5
Q ss_pred ChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHH
Q 012095 336 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSES 415 (471)
Q Consensus 336 ~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (471)
+.+.+.++.+++.. ..+++.+.++.+.++++.+.+.+ ..+|+++||+ ++++ ++.+
T Consensus 211 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~l-------~~~~~~~~~~-~~~~--------------~~~~ 265 (311)
T PRK08354 211 GSTGYAFLEFLIED---DFEHLRKTMPLIWREKERFEKAL-------YVKSDANFFI-KDVG--------------DAEK 265 (311)
T ss_pred CHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHhc-------CCCCCCcEEE-EECC--------------CHHH
Confidence 56667777666653 23566666666677766655544 1257777765 5553 4678
Q ss_pred HHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHH
Q 012095 416 LCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIK 459 (471)
Q Consensus 416 l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~ 459 (471)
+++.|.++ ||.+.||..|+.++|+||+++..+ +.+++++.|+
T Consensus 266 ~~~~l~~~-gv~v~~g~~f~~~~~iRi~~~~~~-~~~~l~~al~ 307 (311)
T PRK08354 266 FVEFLKRN-GILVRDCTSFGLPGYIRFSVRDRE-ENEKLIRALR 307 (311)
T ss_pred HHHHHHHC-CeEEEecccCCCCCeEEEEeCCHH-HHHHHHHHHH
Confidence 88887655 999999999988899999999743 3334444433
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=342.13 Aligned_cols=367 Identities=17% Similarity=0.201 Sum_probs=291.8
Q ss_pred cccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCC--CCCChH---HHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHH
Q 012095 71 RVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP--DFDTPV---LIAEAGINAIREGFTRYTPNAGTLELRSAICHKL 145 (471)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~--~~~~p~---~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~ 145 (471)
+++.++++.+..+.++++.++++|.++|+|+.|+| ++.+|. .+.+++.+++..+..+|++..|.++||+++++++
T Consensus 12 r~~~v~~~~~~~~~~~~~~l~~~g~~~~~L~~g~p~~D~~tds~t~a~~~a~~~a~~~g~~~Y~~~~g~~~Lreaia~~~ 91 (460)
T PRK13238 12 RIKMVEPIRLTTREERERALAEAGYNPFLLKSEDVFIDLLTDSGTGAMSDRQWAAMMRGDEAYAGSRSYYRLEDAVKDIF 91 (460)
T ss_pred eeceeccccccCHHHHHHHHHHcCCCEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHhCCcccCCCCCHHHHHHHHHHHh
Confidence 55667777777888888889999999999999998 788765 6889999988888889999999999999999997
Q ss_pred HHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCC------CCCc--CC
Q 012095 146 KEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS------ENFL--LD 217 (471)
Q Consensus 146 ~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~------~~~~--ld 217 (471)
+ .+++++|+|+++++..++.++++||| |++++|.|.+|...+...|++++.+++++. ++|. +|
T Consensus 92 ~--------~~~vv~t~ggt~A~~~~~~all~pGD-Vii~~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id 162 (460)
T PRK13238 92 G--------YPYTIPTHQGRAAEQILFPVLIKKGD-VVPSNYHFDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFD 162 (460)
T ss_pred C--------CCcEEECCCHHHHHHHHHHHhCCCCC-EEccCCcccchHHHHHHcCCEEEEEeccccccccccccccCCcC
Confidence 3 35799999999999999999999999 999999999999999999999999998642 3454 99
Q ss_pred HHHHHhhhcc----CCcEEEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCeEEEEccCCC--ccccCC-----CCccccc
Q 012095 218 PKVLESKLTE----KSRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYE--HIIYAP-----ATHTSFA 285 (471)
Q Consensus 218 ~e~l~~~l~~----~~~~i~i~~p~NPtG-~~~~~~~l~~i~~l~~~~~~~~ii~De~y~--~~~~~~-----~~~~~~~ 285 (471)
+++|++.+++ ++++|++++|+|||| .+++.+++++|.++|++| |++||+|+++. ...|.. ....++.
T Consensus 163 ~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~-gi~li~Daa~~~e~a~f~~~~e~g~~~~si~ 241 (460)
T PRK13238 163 LEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKY-GIPVVIDAARFAENAYFIKQREPGYKDKSIK 241 (460)
T ss_pred HHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEECcchhhhhhhhhhccccccCCCHH
Confidence 9999999974 689999999999998 999999999999999999 99999999763 343422 1122222
Q ss_pred cCCCCCCceEEEecCCcccCccchhhe------eeEcC-HHHHHHHHHHH----hcccCCC-ChHHHHHHHHHHhccCCC
Q 012095 286 SLPGMWERTLTVNGFSKAFAMTGWRLG------YIAGP-KHFVAACNKIQ----SQFTSGA-SSISQKAGVAALGLGYAG 353 (471)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~g~~G~R~G------~v~~~-~~~i~~l~~~~----~~~~~~~-~~~~q~aa~~~L~~~~~~ 353 (471)
. -+..++|++|.+.++|||+| |++++ ++++++++... ...+++. +...|.|+...|.+.. .
T Consensus 242 ~------i~~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~-~ 314 (460)
T PRK13238 242 E------IAREMFSYADGLTMSAKKDAMVNIGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGM-D 314 (460)
T ss_pred H------HhhhhcccCcEEEEecccCCCCcceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhh-C
Confidence 1 13456788999988899874 55666 57888887663 2324444 4444777777675311 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCC-cccCCCCCCCHHHHHHHHHHcCCEEEECCC
Q 012095 354 GEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGS-EAEGFGKIENSESLCRYLLDKAQVALVPGD 432 (471)
Q Consensus 354 ~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~ 432 (471)
++++..+ .+++++|.+.|.+. |+.+..|.||||+++++...... ...++ .+.+|+.+|+++.||.+.|++
T Consensus 315 ~~~~~~~----~~~~~~l~~~L~~~-G~~~~~p~Gg~~v~~d~~~~~~~~~~~~~----~~~~~a~~L~~e~GV~~~~~~ 385 (460)
T PRK13238 315 EDYLAYR----IGQVEYLGEGLEEA-GVPIQTPAGGHAVFVDAGKFLPHIPAEQF----PAQALACELYLEAGIRGVEIG 385 (460)
T ss_pred hHHHHHH----HHHHHHHHHHHHHC-CCCeEccCCceEEEEEchhcCCCCCCCCC----chHHHHHHHHHHcCeeeeccc
Confidence 3334333 33679999999887 99999999999999998653210 01111 457899999999999999999
Q ss_pred CCCC-------------CCcEEEEeec---CHHHHHHHHHHHHHHHH
Q 012095 433 AFGD-------------DTCIRISYAA---SLTTLQAAVERIKKGLL 463 (471)
Q Consensus 433 ~f~~-------------~~~iRis~~~---~~e~i~~~~~~l~~~l~ 463 (471)
.|.. .+++|+++.. +.++++.+.++|.++.+
T Consensus 386 ~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~ 432 (460)
T PRK13238 386 SLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKE 432 (460)
T ss_pred ceecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHH
Confidence 8752 2589999998 99999999999998764
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-38 Score=310.69 Aligned_cols=345 Identities=37% Similarity=0.641 Sum_probs=287.6
Q ss_pred EEcCCCCCCCCChHHHHHHHHH-HHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhc
Q 012095 98 IRLAAGEPDFDTPVLIAEAGIN-AIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC 176 (471)
Q Consensus 98 i~l~~g~~~~~~p~~v~~a~~~-~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~ 176 (471)
|+|+.|++++.+++.++.+..+ ........|.+..|..++++.+++++...+|.+...+++++++|+++++..++.++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~ 80 (350)
T cd00609 1 IDLSIGEPDFPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALL 80 (350)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhC
Confidence 5789999998887777666654 222345678889999999999999999888766667899999999999999999999
Q ss_pred CCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHH
Q 012095 177 SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARI 256 (471)
Q Consensus 177 ~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l 256 (471)
++||+|+++.|+|.++...++..|.+++.++.+.+..+..+.+.++....+++++|++++|+||||.+++.+++++|+++
T Consensus 81 ~~g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~ 160 (350)
T cd00609 81 NPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAEL 160 (350)
T ss_pred CCCCEEEEcCCCchhHHHHHHHCCCEEEEEecccccCCccCHHHHHhhcCccceEEEEECCCCCCCcccCHHHHHHHHHH
Confidence 99999999999999999999999999999999765543333367777777889999999999999999999999999999
Q ss_pred HHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCH-HHHHHHHHHHhcccCCC
Q 012095 257 VAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAACNKIQSQFTSGA 335 (471)
Q Consensus 257 ~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~-~~i~~l~~~~~~~~~~~ 335 (471)
|+++ |+++|+|++|..+.+.+....... .....+.+++++|++|.++++|.|+||+++++ ++++.+.........++
T Consensus 161 ~~~~-~~~~ivD~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~ 238 (350)
T cd00609 161 AKKH-GILIISDEAYAELVYDGEPPPALA-LLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSGP 238 (350)
T ss_pred HHhC-CeEEEEecchhhceeCCccccccc-CcCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHHHhcccCC
Confidence 9999 999999999998877554322111 22335678999999999998999999999999 89999988877767789
Q ss_pred ChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHH
Q 012095 336 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSES 415 (471)
Q Consensus 336 ~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (471)
+...+.++..+|.. ..++.++.++.++++++++.+.|++.+...+..+.+++++|++++.. ...+
T Consensus 239 ~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~~------------~~~~ 303 (350)
T cd00609 239 STLSQAAAAAALDD---GEEHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEG------------DDEE 303 (350)
T ss_pred ChHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCccEEEEEecCCC------------ChHH
Confidence 99999999999886 23788899999999999999999987444435678899999998753 2345
Q ss_pred HHHHHHHcCCEEEECCCCCC--CCCcEEEEeecCHHHHHHHHHHHH
Q 012095 416 LCRYLLDKAQVALVPGDAFG--DDTCIRISYAASLTTLQAAVERIK 459 (471)
Q Consensus 416 l~~~Ll~~~gV~v~pg~~f~--~~~~iRis~~~~~e~i~~~~~~l~ 459 (471)
++.++++++||.+.++..|. ...++|++++...+++++++++|+
T Consensus 304 ~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~~~~i~~~~~al~ 349 (350)
T cd00609 304 FLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATPEEELEEALERLA 349 (350)
T ss_pred HHHHHHHhCCEEEecccccccCCCCeEEEEeeCCHHHHHHHHHHhh
Confidence 55556667799999998886 678999999998889999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=277.39 Aligned_cols=367 Identities=19% Similarity=0.317 Sum_probs=279.2
Q ss_pred hHHHHHHHH-HHHHhcCCCeEEcCCCCCCCCC--hHHHHHHHHHHHHcC-----CCCCCCCCCCHHHHHHHHHHHHHHhC
Q 012095 79 KTVAITDQA-TALAQAGVSVIRLAAGEPDFDT--PVLIAEAGINAIREG-----FTRYTPNAGTLELRSAICHKLKEENG 150 (471)
Q Consensus 79 ~~~~~~~~~-~~~~~~g~~~i~l~~g~~~~~~--p~~v~~a~~~~~~~~-----~~~Y~~~~G~~~lr~~ia~~~~~~~g 150 (471)
.+..+++.. ..++..| .|.|+.|+|..-| ..-+.+-..+.+.++ ..+|+.++|...|.+++++.+++++|
T Consensus 15 Gi~~lMdDl~d~Lrt~g--~imLggGNPa~iPem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~yg 92 (417)
T COG3977 15 GITQLMDDLNDGLRTPG--AIMLGGGNPARIPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYG 92 (417)
T ss_pred hHHHHHHHHHhhccCCC--ceeeCCCCcccChhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhC
Confidence 344444433 3333333 9999999987544 123444444444433 46899999999999999999999999
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHhcC---CC--CeEEEc-CCCCCChHHHHHHcCCEEEE---ecCCCCCC--CcCCHH
Q 012095 151 LSYTPDQILVSNGAKQSILQAVLAVCS---PG--DEVIIP-APFWVSYPEMARIADATPVI---LPTRISEN--FLLDPK 219 (471)
Q Consensus 151 ~~~~~~~i~it~G~~~al~~~~~~l~~---~g--d~Vlv~-~p~y~~~~~~~~~~G~~~~~---v~~~~~~~--~~ld~e 219 (471)
+++++.||.+|+|++.+.+.++..+.. .| ..|++| .|.|.+|.++...-..-|.. +...+.+. |.+|.+
T Consensus 93 wnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d~fVs~kP~iel~~~g~FKY~vDF~ 172 (417)
T COG3977 93 WNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEEDLFVSAKPNIELLPAGQFKYHVDFE 172 (417)
T ss_pred CCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCccceeeccCCcccccccceeeccCHH
Confidence 999999999999999999988888753 24 345554 79999987653322211111 11112232 456766
Q ss_pred HHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCC-CCCCceEEEe
Q 012095 220 VLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP-GMWERTLTVN 298 (471)
Q Consensus 220 ~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~~i~~~ 298 (471)
++. +.+++.+|+++-|.||||.+++.+|+.+|..++++| ++.+|+|.+|+. +-+..-+.++. -..+|+|.|.
T Consensus 173 ~l~--i~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~-giPliIDnAYg~----PFP~iifsd~~~~w~~NiilC~ 245 (417)
T COG3977 173 HLH--IGESTGAICVSRPTNPTGNVLTDEELAKLDALARQH-GIPLIIDNAYGV----PFPGIIFSDATPLWNENIILCM 245 (417)
T ss_pred Hcc--cccccceEEecCCCCCCCCcccHHHHHHHHHHhhhc-CCcEEEecccCC----CCCceecccccccCCCCEEEEe
Confidence 664 357899999999999999999999999999999999 999999999974 11112222221 1247899999
Q ss_pred cCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC-
Q 012095 299 GFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE- 377 (471)
Q Consensus 299 S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~- 377 (471)
|+||. |+||.|+|.+++++++++.+.......+..+..++++++..+++.+...+-.-+-++..|+++.+...+.|+.
T Consensus 246 SLSK~-GLPG~R~GIiIane~viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~ 324 (417)
T COG3977 246 SLSKL-GLPGSRCGIIIANEKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRY 324 (417)
T ss_pred ehhhc-CCCCcceeEEEccHHHHHHHHhccceeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 99997 8999999999999999999999988888899999999999999875432222334567788888888887776
Q ss_pred CC--CCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---------CCcEEEEeec
Q 012095 378 LE--GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---------DTCIRISYAA 446 (471)
Q Consensus 378 ~~--g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~---------~~~iRis~~~ 446 (471)
+| .+.+.+|+|+.|+|+.+.+.. .+.+++.++|.++ ||.++||..|.. ..|+|+++..
T Consensus 325 lp~~~~~iHkpEGAIFlWLWf~dLP----------Itt~~LYq~LKa~-Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~~~ 393 (417)
T COG3977 325 LPEYRCLIHKPEGAIFLWLWFKDLP----------ITTEELYQRLKAR-GVLMVPGHYFFPGLDKEWPHTHQCMRMNYVP 393 (417)
T ss_pred cCccceeeecCCcceeehhhhccCC----------CCHHHHHHHHHhC-eEEEecccccCCCCCCCCCCccceEEEecCC
Confidence 43 367789999999999987652 3788999987665 999999999864 2589999999
Q ss_pred CHHHHHHHHHHHHHHHHhhC
Q 012095 447 SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 447 ~~e~i~~~~~~l~~~l~~~~ 466 (471)
+++.|++++.+|.+.+++.-
T Consensus 394 ~~~~ie~Gva~lae~ve~~y 413 (417)
T COG3977 394 EPEKIEKGVAILAEEVERAY 413 (417)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988753
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=288.83 Aligned_cols=351 Identities=23% Similarity=0.352 Sum_probs=277.0
Q ss_pred hHHHHHHHHHHHHc---CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcC-CCCeEEEc
Q 012095 110 PVLIAEAGINAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS-PGDEVIIP 185 (471)
Q Consensus 110 p~~v~~a~~~~~~~---~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~-~gd~Vlv~ 185 (471)
|..+++...+.+.. ....|+.++|++-+|+.+|+++.++.|.+.+|++|++|.|++.++..++..++. +.|.|++|
T Consensus 88 p~Dai~RA~~~L~~~gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliP 167 (475)
T KOG0258|consen 88 PTDAIKRAKRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIP 167 (475)
T ss_pred CHHHHHHHHHHHHhcCCcccccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEee
Confidence 44455555555543 346799999999999999999999999889999999999999999999988864 67999999
Q ss_pred CCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc-----CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhC
Q 012095 186 APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-----KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 260 (471)
Q Consensus 186 ~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~-----~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~ 260 (471)
-|.|+-|...+.+.|+..+.+.++++++|.+|.++|++.+.+ +++++++.||.||||.+++++-+++|+.+|.++
T Consensus 168 iPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~ 247 (475)
T KOG0258|consen 168 IPQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEE 247 (475)
T ss_pred cCCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999988754 688999999999999999999999999999999
Q ss_pred CCeEEEEccCCCccccCCC-Ccccccc----CCCC---CCceEEEecCCccc-CccchhheeeE---cCHHHHHHHHHHH
Q 012095 261 PRLLVLSDEIYEHIIYAPA-THTSFAS----LPGM---WERTLTVNGFSKAF-AMTGWRLGYIA---GPKHFVAACNKIQ 328 (471)
Q Consensus 261 ~~~~ii~De~y~~~~~~~~-~~~~~~~----~~~~---~~~~i~~~S~SK~~-g~~G~R~G~v~---~~~~~i~~l~~~~ 328 (471)
+++|+.||+|.+-+|.+. ...++.. +... .-.++.++|.||.+ |=.|.|-||+- .++++.+.+.+..
T Consensus 248 -~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~ 326 (475)
T KOG0258|consen 248 -GLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLA 326 (475)
T ss_pred -CeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHHHHHH
Confidence 999999999999888653 3444332 2211 12356788889998 56889999965 3667777777665
Q ss_pred hcccCCCChHHHHHHHHHHhccCC-------ChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccC
Q 012095 329 SQFTSGASSISQKAGVAALGLGYA-------GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG 401 (471)
Q Consensus 329 ~~~~~~~~~~~q~aa~~~L~~~~~-------~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~ 401 (471)
. ...|++..+|...-....-+.. .....+.+...++++...+.+.++.++|+.+.+++|+||+|.++.-+..
T Consensus 327 s-i~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~~gi~cn~~qGAMY~fP~i~lP~k 405 (475)
T KOG0258|consen 327 S-IKLCPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSLEGISCNPVQGAMYLFPQISLPPK 405 (475)
T ss_pred h-hhhcCCccchhhhceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHhhcCceeeccCccceeecccccCCHH
Confidence 4 4557788888776665553211 1123456778889999999999999999999999999999977642211
Q ss_pred -CcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCC-C--cEEEEeecCHHHHHHHHHHHHHHHHhh
Q 012095 402 -SEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD-T--CIRISYAASLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 402 -~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~-~--~iRis~~~~~e~i~~~~~~l~~~l~~~ 465 (471)
.+++...+...+.-.|.+||+..||+++||++||.. | ++|.++-... + +.++++.++=.++
T Consensus 406 aie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~TiLp~~--~-~~i~~~~~fH~~f 470 (475)
T KOG0258|consen 406 AIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQKEGTYHFRTTILPPG--L-EIIEKFKKFHAEF 470 (475)
T ss_pred HHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCCCceeEEEEeecCch--h-HHHHHHHHHHHHH
Confidence 122222233466777899999999999999999964 3 7999998854 3 6666666654443
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=293.80 Aligned_cols=309 Identities=20% Similarity=0.239 Sum_probs=242.8
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEE
Q 012095 105 PDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVII 184 (471)
Q Consensus 105 ~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv 184 (471)
..+...+.++++..+++.. |+ |..++.+.+.+.+++.+|. +++++++++|+.+++..++.++++|||.|++
T Consensus 30 lgl~~~~~~~~~~~~~~~~----~~---g~~~~~~~Le~~lA~~~g~--~~e~ilv~~gg~~a~~~~~~al~~~gd~Vli 100 (346)
T TIGR03576 30 TGLAGGFKIDEEDLELLET----YV---GPAIFEEKVQELGREHLGG--PEEKILVFNRTSSAILATILALEPPGRKVVH 100 (346)
T ss_pred ccCCCChhHHHHHHHHHHH----hc---CCHHHHHHHHHHHHHHcCC--CcceEEEECCHHHHHHHHHHHhCCCCCEEEE
Confidence 3445577888888887755 42 6678888888888888884 6789999999999999999999999999997
Q ss_pred c---CCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC
Q 012095 185 P---APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 261 (471)
Q Consensus 185 ~---~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~ 261 (471)
+ .|+|++|...++..|++++.+ .++++++. .+++++|++ +++||+|.+++.+++++|+++|++|
T Consensus 101 ~~~d~p~~~s~~~~~~l~ga~~~~~---------~~l~~l~~--~~~~~lIii-tg~s~~G~v~~~~~L~~i~~la~~~- 167 (346)
T TIGR03576 101 YLPEKPAHPSIPRSCKLAGAEYFES---------DELSELKK--IDGTSLVVI-TGSTMDLKVVSEEDLKRVIKQAKSK- 167 (346)
T ss_pred CCCCCCCchhHHHHHHHcCCEEecc---------CCHHHHhh--CcCceEEEE-ECCCCCCcccCHHHHHHHHHHHHHc-
Confidence 4 579999999999999986432 14555433 246787777 4579999999999999999999999
Q ss_pred CeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHH
Q 012095 262 RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQK 341 (471)
Q Consensus 262 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~ 341 (471)
+++||+||+|..++.+.....+.... +..+++.|||| +++|+|+||+++++++++.+.+...++.++++++.|.
T Consensus 168 ~~~livDEAy~~~~~~~~~~~~~~~~----~~divv~s~SK--alaG~r~G~v~~~~~li~~l~~~~~~~~~s~~~~~~~ 241 (346)
T TIGR03576 168 EAIVLVDDASGARVRRLYGQPPALDL----GADLVVTSTDK--LMDGPRGGLLAGRKELVDKIKSVGEQFGLEAQAPLLA 241 (346)
T ss_pred CCEEEEECCccccccccCCCCCHHHc----CCcEEEeccch--hccccceEEEEeCHHHHHHHHHhhcCcccCccHHHHH
Confidence 99999999999865431111122222 22377889999 5689999999999999999999988888778999999
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHH
Q 012095 342 AGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL 421 (471)
Q Consensus 342 aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll 421 (471)
++.++|+. .. .+..++.++++++++.+.+++ +.+.++.++ |+|++++.. ++.+++..++
T Consensus 242 aa~~aL~~---~~--~~~~~~~l~~r~~~~~~~l~~---~~~~~~~~~-f~~~~~~~~------------~~~~~~~~ll 300 (346)
T TIGR03576 242 AVVRALEE---FE--LSRIRDAFKRKEEVYLRLFDK---LNVERTPTG-FVIKGVEEE------------KLIEIGLDLL 300 (346)
T ss_pred HHHHHHhh---cc--HHHHHHHHHHHHHHHHHHHHh---CCCCcCCCe-EEEEeCCCC------------CHHHHHHHHH
Confidence 99999974 12 356678899999988888874 344444455 699998642 4557788888
Q ss_pred HcCCEEEECCCCCC-CCCcEEEEeecCHH---HHHHHHHHHHHHH
Q 012095 422 DKAQVALVPGDAFG-DDTCIRISYAASLT---TLQAAVERIKKGL 462 (471)
Q Consensus 422 ~~~gV~v~pg~~f~-~~~~iRis~~~~~e---~i~~~~~~l~~~l 462 (471)
+++||.++||+.|. .++|+|||++.+++ +++.+++.|++.+
T Consensus 301 ~~~gV~v~~~~~f~~~~~~vRis~~~~~~~~~~~~~~~~al~~~~ 345 (346)
T TIGR03576 301 RNYGIITITAVGMPGASKTLRFDLAAKDAERIGDDYLVEAVKDSL 345 (346)
T ss_pred HhCCEEEeCCcccCCCCCeEEEEEecChHHhcCHHHHHHHHHhcc
Confidence 88899999999884 47899999999765 7888888887654
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=302.34 Aligned_cols=352 Identities=18% Similarity=0.187 Sum_probs=270.9
Q ss_pred HHHHHhcCCCeEEcCCCCC--CCCCh---HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEe
Q 012095 87 ATALAQAGVSVIRLAAGEP--DFDTP---VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVS 161 (471)
Q Consensus 87 ~~~~~~~g~~~i~l~~g~~--~~~~p---~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it 161 (471)
++.+++.|.+++.|..+++ ++.++ ..+.+++.+++..+...|+++.|.++|+++++++++ .+++++|
T Consensus 3 ~~~l~~~g~n~~~l~~~~v~iDlltds~t~ams~~~~~a~~~gd~~Y~~~~g~~~Leeaia~~~g--------~~~vv~t 74 (431)
T cd00617 3 ERALKEAGYNVFLLRSEDVYIDLLTDSGTGAMSDYQWAAMMLGDEAYAGSKSFYDLEDAVQDLFG--------FKHIIPT 74 (431)
T ss_pred HHHHHHcCCCEEeCCCCCcCCCCCCCCCcHHHHHHHHHHHHhCCCccCCCCCHHHHHHHHHHHHC--------CCeEEEc
Confidence 4567789999999999999 77776 478888888887778889999999999999999973 3689999
Q ss_pred CChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCC--------CcCCHHHHHhhhccC----C
Q 012095 162 NGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN--------FLLDPKVLESKLTEK----S 229 (471)
Q Consensus 162 ~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~--------~~ld~e~l~~~l~~~----~ 229 (471)
+|+++++..++.++++|||+| +++|.|..|...+...|++++.++++++.+ +++|+++|+++++++ +
T Consensus 75 ~~Gt~Al~la~~al~~pGD~V-~~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~ 153 (431)
T cd00617 75 HQGRGAENILFSILLKPGRTV-PSNMHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENI 153 (431)
T ss_pred CCHHHHHHHHHHHhCCCCCEE-ccCCcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccCCCc
Confidence 999999999999999999988 699999999999999999999999975432 459999999999865 7
Q ss_pred cEEEEcCCCCCc-ccCCCHHHHHHHHHHHHhCCCeEEEEccCCC--cccc-----CCCCccccccCCCCCCceEEEecCC
Q 012095 230 RLLILCSPSNPT-GSVYPKNLLDEIARIVAKHPRLLVLSDEIYE--HIIY-----APATHTSFASLPGMWERTLTVNGFS 301 (471)
Q Consensus 230 ~~i~i~~p~NPt-G~~~~~~~l~~i~~l~~~~~~~~ii~De~y~--~~~~-----~~~~~~~~~~~~~~~~~~i~~~S~S 301 (471)
++|++++|+||+ |.+++.+++++|.++|++| |++||+|++.. ...| ++....++. +.++.+.|+|
T Consensus 154 ~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~-gi~li~DaAr~~~na~~i~~r~~g~~~~si~------ei~~e~~s~s 226 (431)
T cd00617 154 PYIVLTITNNTAGGQPVSMANLREVRELAHKY-GIPVVLDAARFAENAYFIKEREEGYRDKSIA------EIAREMFSYA 226 (431)
T ss_pred cEEEEECCcCCCCCccCCHHHHHHHHHHHHHc-CCEEEEEchhhHhhhhhhhcccccccCCCHH------HHHHHhhccC
Confidence 889999999998 9999999999999999999 99999999943 2222 122222222 2345688999
Q ss_pred cccCccchh------heeeEcCH-HHHHHHHHHHh----cccC-CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHH
Q 012095 302 KAFAMTGWR------LGYIAGPK-HFVAACNKIQS----QFTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRD 369 (471)
Q Consensus 302 K~~g~~G~R------~G~v~~~~-~~i~~l~~~~~----~~~~-~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~ 369 (471)
|.+.|+||| .||+++++ +++++++.... ..++ +.+.....++..+|.+.. + .+.+.++++ +++
T Consensus 227 d~~~mS~~K~~~~~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~---~-~~~l~~~~~-~r~ 301 (431)
T cd00617 227 DGCTMSAKKDGLVNIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAV---E-EDYLRHRVE-QVR 301 (431)
T ss_pred CEEEEEeecCCCCccceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhcc---c-HHHHHHHHH-HHH
Confidence 999999998 56999986 58888775321 1111 223333333333565411 1 223333333 558
Q ss_pred HHHHHhcCCCCCeeeCCCcceEEeEecCCccC-CcccCCCCCCCHHHHHHHHHHcCCEEEEC-CCC-CC-----------
Q 012095 370 FLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG-SEAEGFGKIENSESLCRYLLDKAQVALVP-GDA-FG----------- 435 (471)
Q Consensus 370 ~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~Ll~~~gV~v~p-g~~-f~----------- 435 (471)
++.+.|.+. |+.+..|.|++|+|++++...+ ....++ ++.+|+.+|+++.||.++- |+. ++
T Consensus 302 ~l~~~L~~~-G~~v~~P~Ggh~v~~d~~~~~~~~~~~~~----~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~ 376 (431)
T cd00617 302 YLGDRLDEA-GVPIVEPAGGHAVFIDAREFLPHIPQEQF----PAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYP 376 (431)
T ss_pred HHHHHHHHC-CCCccCCCcceEEEEEhHHhcCCCCcccC----cHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCC
Confidence 899999998 9999999999999999875321 001111 6889999999999999654 441 11
Q ss_pred CCCcEEEEeec---CHHHHHHHHHHHHHHHHh
Q 012095 436 DDTCIRISYAA---SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 436 ~~~~iRis~~~---~~e~i~~~~~~l~~~l~~ 464 (471)
.-..+|+++.. +.++++...+.|..++++
T Consensus 377 ~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~ 408 (431)
T cd00617 377 ELELVRLAIPRRVYTQDHMDYVAAAVIALYER 408 (431)
T ss_pred ccceeEEeccccccCHHHHHHHHHHHHHHHhh
Confidence 02579999986 889999999999988865
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=297.55 Aligned_cols=336 Identities=18% Similarity=0.172 Sum_probs=256.1
Q ss_pred cCCCeEEcCCCC-CCCCChHHHHHHHHHHHHcCCCCCC---CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 93 AGVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFTRYT---PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 93 ~g~~~i~l~~g~-~~~~~p~~v~~a~~~~~~~~~~~Y~---~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
.|+++|+|+.|+ +++++++.+.+++.+++.+....|+ ...|..++++++++++++.+|. +++|++|+| ++++
T Consensus 40 ~g~~~i~l~~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~---~~~i~~tsG-~~a~ 115 (397)
T PRK06939 40 DGKEVINFCANNYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGT---EDAILYSSC-FDAN 115 (397)
T ss_pred CCCeEEEeeccCccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCC---CcEEEEcCh-HHHH
Confidence 688999999998 7888899999999998865323332 3468999999999999998883 478888888 6678
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc------CCcEEEEcCCCCCcc
Q 012095 169 LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTG 242 (471)
Q Consensus 169 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~------~~~~i~i~~p~NPtG 242 (471)
..+++++++|||+|++++|+|+++...++..|++++.++. .|++.+++.+++ ++++|++.+.+||||
T Consensus 116 ~~~~~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G 188 (397)
T PRK06939 116 GGLFETLLGKEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMADLEAQLKEAKEAGARHKLIATDGVFSMDG 188 (397)
T ss_pred HHHHHHhCCCCCEEEEEhhhhHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCC
Confidence 8889999999999999999999999999999999888764 378888887753 567777777789999
Q ss_pred cCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCC--ccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHH
Q 012095 243 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT--HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 320 (471)
Q Consensus 243 ~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~--~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~ 320 (471)
...+ +++|.++|++| +++||+||+|....+.... ......+. .+.+++++||||.++ |+|+||+++++++
T Consensus 189 ~~~~---~~~l~~la~~~-~~~li~De~~~~g~~~~~~~~~~~~~~~~--~~~~i~~~S~sK~~~--g~r~G~v~~~~~~ 260 (397)
T PRK06939 189 DIAP---LPEICDLADKY-DALVMVDDSHAVGFVGENGRGTVEHFGVM--DRVDIITGTLGKALG--GASGGYTAGRKEV 260 (397)
T ss_pred CcCC---HHHHHHHHHHh-CCEEEEECcccccCcCCCCCCHHHHcCCC--CCCcEEEEECHHHhC--ccCceEEEeCHHH
Confidence 8776 89999999999 9999999999643222111 11122221 245799999999984 5699999999999
Q ss_pred HHHHHHHHhcc--cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCC
Q 012095 321 VAACNKIQSQF--TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFST 398 (471)
Q Consensus 321 i~~l~~~~~~~--~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~ 398 (471)
++.+......+ ..+.++..+.++.++++. .....+++++++++++++.+.|+++ |+++..+.++++.+ .++.
T Consensus 261 ~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~----~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~-~~~~ 334 (397)
T PRK06939 261 IDWLRQRSRPYLFSNSLAPAIVAASIKVLEL----LEESDELRDRLWENARYFREGMTAA-GFTLGPGEHPIIPV-MLGD 334 (397)
T ss_pred HHHHHHhCccccccCCCCHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCEEEE-EECC
Confidence 99887654322 222334445555666653 1223577889999999999999887 77776677776543 4443
Q ss_pred ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC----CCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012095 399 YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD----DTCIRISYAA--SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~----~~~iRis~~~--~~e~i~~~~~~l~~~l~~~~ 466 (471)
. .++.+|++.|+++ ||.+.++. |.. .+++|++++. +++++++++++|++++++..
T Consensus 335 ~-----------~~~~~~~~~L~~~-gI~v~~~~-~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~~~ 395 (397)
T PRK06939 335 A-----------KLAQEFADRLLEE-GVYVIGFS-FPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKELG 395 (397)
T ss_pred H-----------HHHHHHHHHHHHC-CceEeeeC-CCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHhC
Confidence 2 1467899999887 99998654 421 3589999864 88999999999999987754
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=303.09 Aligned_cols=351 Identities=20% Similarity=0.278 Sum_probs=265.4
Q ss_pred cCCCeEEcCCCC-CCCCChHHHHHHHHHHHHc-CC------CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCCh
Q 012095 93 AGVSVIRLAAGE-PDFDTPVLIAEAGINAIRE-GF------TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 164 (471)
Q Consensus 93 ~g~~~i~l~~g~-~~~~~p~~v~~a~~~~~~~-~~------~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~ 164 (471)
.|+++|+|++|+ +.+..++.+++++.+++.+ +. ..|++..+..+|+++|++++ | .++.|++++|+
T Consensus 107 ~G~~~id~~s~~~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~----~---~~~~i~~s~G~ 179 (481)
T PLN02822 107 NGKDVVNFASANYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFL----G---TPDSILYSYGL 179 (481)
T ss_pred CCceEEEeECCCcCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHh----C---CCCEEEECCHH
Confidence 578899999886 6888899999999999987 32 13555555777777777776 3 56789999988
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhh--ccCC-cEEEEcCCCCCc
Q 012095 165 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL--TEKS-RLLILCSPSNPT 241 (471)
Q Consensus 165 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l--~~~~-~~i~i~~p~NPt 241 (471)
+ ++..++.+++++||.|+++..+|.++...++..|.+++.++.+..+++..+++++++.. ++++ ++|+++.++|+|
T Consensus 180 ~-a~~sai~a~~~~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~ 258 (481)
T PLN02822 180 S-TIFSVIPAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNS 258 (481)
T ss_pred H-HHHHHHHHhCCCCCEEEEeCCccHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCC
Confidence 8 46778999999999999998888888888899999999998763333333334333322 1334 688888999999
Q ss_pred ccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCcc--ccccCCCCCCceEEEecCCcccCccchhheeeEcCHH
Q 012095 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT--SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH 319 (471)
Q Consensus 242 G~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~--~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~ 319 (471)
|.+.+ +++|+++|++| ++++|+||+|..+.++..+.. ....+.. .+..|+++||||.+|++| ||++++++
T Consensus 259 G~i~~---L~~i~~l~~k~-~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~-~~~dii~~s~sKalg~~G---G~i~g~~~ 330 (481)
T PLN02822 259 GQIAP---LDEIVRLKEKY-RFRVLLDESNSFGVLGKSGRGLSEHFGVPI-EKIDIITAAMGHALATEG---GFCTGSAR 330 (481)
T ss_pred CCccC---HHHHHHHHHHc-CCEEEEECCccccccCCCCCChHHHcCCCC-CCCeEEEecchhhhhhCC---eEEEcCHH
Confidence 99999 89999999999 999999999998777632221 2222221 356799999999999999 99999999
Q ss_pred HHHHHHHHHhcccCCC--ChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecC
Q 012095 320 FVAACNKIQSQFTSGA--SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS 397 (471)
Q Consensus 320 ~i~~l~~~~~~~~~~~--~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~ 397 (471)
+++.++.....+.++. ++..+.++.++|+. .+. ..++++.++++++++.+.|++++|+.+..+.+++++++.++
T Consensus 331 ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~---l~~-~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~spi~~l~l~ 406 (481)
T PLN02822 331 VVDHQRLSSSGYVFSASLPPYLASAAITAIDV---LED-NPSVLAKLKENIALLHKGLSDIPGLSIGSNTLSPIVFLHLE 406 (481)
T ss_pred HHHHHHhcCCceeeccccCHHHHHHHHHHHHH---HHh-CHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCEEEEEeC
Confidence 9998876555555554 47778888888864 122 35788899999999999999987888887888999999986
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC--CCCC---CCcEEEEee--cCHHHHHHHHHHHHHHHHhhC
Q 012095 398 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD--AFGD---DTCIRISYA--ASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~--~f~~---~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~ 466 (471)
+..+. ..+ ......+++++|++++||++.|+. .|+. +.++|++++ .++++|++++++|++++.+..
T Consensus 407 ~~~~~-~~~--~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~~~ 479 (481)
T PLN02822 407 KSTGS-AKE--DLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKRVAASVL 479 (481)
T ss_pred CCccc-ccc--hHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHHHHHHHh
Confidence 42110 000 000136799999966799999873 3432 357999877 499999999999999988754
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=293.51 Aligned_cols=333 Identities=19% Similarity=0.212 Sum_probs=251.9
Q ss_pred cCCCeEEcCCCC-CCCCChHHHHHHHHHHHHcCCCCCCCCC---CC----HHHHHHHHHHHHHHhCCCCCCCcEEEeCCh
Q 012095 93 AGVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFTRYTPNA---GT----LELRSAICHKLKEENGLSYTPDQILVSNGA 164 (471)
Q Consensus 93 ~g~~~i~l~~g~-~~~~~p~~v~~a~~~~~~~~~~~Y~~~~---G~----~~lr~~ia~~~~~~~g~~~~~~~i~it~G~ 164 (471)
.|+++|+|+.|+ +++++++++++++.+++.+...+|++.. |. .+|++.+++++ | .+++++++|+
T Consensus 36 ~g~~~i~~~~~~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~~~----g----~~~~ii~~~~ 107 (393)
T TIGR01822 36 DGREVLNFCANNYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAFL----G----TEDTILYASC 107 (393)
T ss_pred CCceEEEeeCCCccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHh----C----CCcEEEECch
Confidence 678899999999 5888899999999999876334677666 86 56666666665 3 2577888899
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc------CCcEEEEcCCC
Q 012095 165 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPS 238 (471)
Q Consensus 165 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~------~~~~i~i~~p~ 238 (471)
++++..++.+++++||+|++++|.|+++...++..+.+.+.++. +|++++++++++ ++++|++.+++
T Consensus 108 ~~a~~~~~~~l~~~gd~vi~~~~~~~s~~~~~~~~~~~~~~~~~-------~d~~~l~~~i~~~~~~~~~~~~v~~~~v~ 180 (393)
T TIGR01822 108 FDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMADLEAQLKEARAAGARHRLIATDGVF 180 (393)
T ss_pred HHHHHHHHHHhCCCCCEEEEeccccHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhhhhcCCCceEEEEeCCc
Confidence 99999999999999999999999999999999998888765531 689999988864 67788888899
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCC-CCCceEEEecCCcccCccchhheeeEcC
Q 012095 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG-MWERTLTVNGFSKAFAMTGWRLGYIAGP 317 (471)
Q Consensus 239 NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~g~~G~R~G~v~~~ 317 (471)
||||.+.+ +++|+++|++| +++||+||+|....++.... ......+ ..+.+++++||||.+ +|+|+||++++
T Consensus 181 ~~tG~~~~---l~~i~~la~~~-~~~li~De~~~~g~~~~~~~-~~~~~~~~~~~~di~~~s~sK~l--~g~r~G~~~~~ 253 (393)
T TIGR01822 181 SMDGVIAP---LDEICDLADKY-DALVMVDECHATGFLGPTGR-GSHELCGVMGRVDIITGTLGKAL--GGASGGFTTAR 253 (393)
T ss_pred cCCCCcCC---HHHHHHHHHHc-CCEEEEECCccccCcCCCCC-chHHhcCCCCCCeEEEEEChHHh--hCCCcEEEEeC
Confidence 99999998 89999999999 99999999996433322111 1111111 124669999999986 57899999999
Q ss_pred HHHHHHHHHHHhccc--CCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEe
Q 012095 318 KHFVAACNKIQSQFT--SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFID 395 (471)
Q Consensus 318 ~~~i~~l~~~~~~~~--~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~ 395 (471)
+++++.+......+. .+.++..+.++.++|+. .+..++++++++++++++.+.|++. |+.+..+.+.+ +.+.
T Consensus 254 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-~~i~ 327 (393)
T TIGR01822 254 KEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEM----LEASNELRDRLWANTRYFRERMEAA-GFDIKPADHPI-IPVM 327 (393)
T ss_pred HHHHHHHHHhCccceecCCCCHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCCCE-EEEE
Confidence 999998876433222 22344555566666653 2335677889999999999999886 87776555554 4444
Q ss_pred cCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC--C--CCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012095 396 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--D--DTCIRISYAA--SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~--~--~~~iRis~~~--~~e~i~~~~~~l~~~l~~~~ 466 (471)
+++. .+..++++.|+++ ||.+. +..|. . ..++|++++. ++++|++++++|++++++++
T Consensus 328 ~~~~-----------~~~~~l~~~L~~~-gI~v~-~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~~~~ 391 (393)
T TIGR01822 328 LYDA-----------VLAQRFARRLLEE-GIYVT-GFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIGRELG 391 (393)
T ss_pred eCCH-----------HHHHHHHHHHHHC-CeeEe-eeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHhC
Confidence 4432 1467899998877 99987 55443 1 2469988876 89999999999999987654
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=286.69 Aligned_cols=331 Identities=15% Similarity=0.158 Sum_probs=247.6
Q ss_pred hcCCCeEEcCCCCC-CCCChHHHHHHHHHHHHcCCC---CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHH
Q 012095 92 QAGVSVIRLAAGEP-DFDTPVLIAEAGINAIREGFT---RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (471)
Q Consensus 92 ~~g~~~i~l~~g~~-~~~~p~~v~~a~~~~~~~~~~---~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~a 167 (471)
..|+++|+|+.|+| +++.|+.+.+++.+++.+... .|....|..++...+.+.+.+++| .+++|++++|+.+.
T Consensus 13 ~~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~---~~~~i~~~~G~~~~ 89 (360)
T TIGR00858 13 RDGRRLLNFSSNDYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKG---TEAALLFSSGYLAN 89 (360)
T ss_pred ECCceEEecccCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC---CCCEEEECchHHHH
Confidence 46889999999964 344578899999988865222 222234554545555555554455 45788888886665
Q ss_pred HHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc----CCcEEEEcCCCCCccc
Q 012095 168 ILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE----KSRLLILCSPSNPTGS 243 (471)
Q Consensus 168 l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~----~~~~i~i~~p~NPtG~ 243 (471)
+ .++.+++++||+|++++|+|..+...++..|++++.++. +|++.+++.+++ ++++|++++++||||.
T Consensus 90 ~-~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~ 161 (360)
T TIGR00858 90 V-GVISALVGKGDLILSDALNHASLIDGCRLSGARVRRYRH-------NDVEHLERLLEKNRGERRKLIVTDGVFSMDGD 161 (360)
T ss_pred H-HHHHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEecC-------CCHHHHHHHHHHcccCCCeEEEEeCCccCCCC
Confidence 5 467888899999999999999999999999999988763 588999988864 4678888999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCc--cccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHH
Q 012095 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH--TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 321 (471)
Q Consensus 244 ~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~--~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i 321 (471)
..+ +++|.++|+++ +++||+||+|..+.++.... .....+.. .+++|+++||||.||++| ||++++++++
T Consensus 162 ~~~---~~~i~~l~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s~sK~~~~~g---G~~~~~~~~~ 233 (360)
T TIGR00858 162 IAP---LPQLVALAERY-GAWLMVDDAHGTGVLGEDGRGTLEHFGLKP-EPVDIQVGTLSKALGSYG---AYVAGSQALI 233 (360)
T ss_pred CcC---HHHHHHHHHHc-CcEEEEECcccccCcCCCCCchHHhcCCCc-cCCcEEEEechhhhhccC---cEEEcCHHHH
Confidence 988 88999999999 99999999998766543211 12222222 467899999999999777 9999999999
Q ss_pred HHHHHHHhcc--cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCc
Q 012095 322 AACNKIQSQF--TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTY 399 (471)
Q Consensus 322 ~~l~~~~~~~--~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~ 399 (471)
+.+......+ ..+.++..+.++.++++. ..+..+++++++++++++.+.|+++ |+.+.++ +++++|+.++..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~~----~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~-~~~~~~~~~~~~ 307 (360)
T TIGR00858 234 DYLINRARTLIFSTALPPAVAAAALAALEL----IQEEPWRREKLLALIARLRAGLEAL-GFTLMPS-CTPIVPVIIGDN 307 (360)
T ss_pred HHHHHhCccceecCCCCHHHHHHHHHHHHH----HhhCHHHHHHHHHHHHHHHHHHHHc-CCccCCC-CCCEEEEEeCCH
Confidence 9887554332 233455555566677763 2234567889999999999999987 7776644 555688888642
Q ss_pred cCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeec--CHHHHHHHHHHHH
Q 012095 400 YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAA--SLTTLQAAVERIK 459 (471)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~---~~~iRis~~~--~~e~i~~~~~~l~ 459 (471)
.+..++.++|+++ ||.+.++..++. .+++|++++. +++++++++++|+
T Consensus 308 -----------~~~~~~~~~l~~~-gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 308 -----------ASALALAEELQQQ-GIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred -----------HHHHHHHHHHHHC-CeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence 1467899988765 999998776542 3589999996 8899999998763
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=287.46 Aligned_cols=337 Identities=20% Similarity=0.220 Sum_probs=258.5
Q ss_pred hcCCCeEEcCCCC-CCCCChHHHHHHHHHHHHcC---CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHH
Q 012095 92 QAGVSVIRLAAGE-PDFDTPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (471)
Q Consensus 92 ~~g~~~i~l~~g~-~~~~~p~~v~~a~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~a 167 (471)
..|+++|+|+.|+ +++++++.+.+++.+++.+. ...|....|..++++.+++++++.+| .++++++++|++ +
T Consensus 30 ~~g~~~id~~~~~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g---~~~~i~~~sG~~-a 105 (385)
T TIGR01825 30 VNGKEVINLSSNNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKK---TEAALVFQSGFN-T 105 (385)
T ss_pred ECCceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhC---CCcEEEECcHHH-H
Confidence 3578899999997 78888899999999888642 24577788999999999999999888 346788888854 5
Q ss_pred HHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc----CCcEEEEcCCCCCccc
Q 012095 168 ILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE----KSRLLILCSPSNPTGS 243 (471)
Q Consensus 168 l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~----~~~~i~i~~p~NPtG~ 243 (471)
+..++.+++++||.|++++|+|.++...+...|++++.++ .+|++++++.+.+ ++++|++++++||||.
T Consensus 106 ~~~a~~~~~~~gd~vi~~~~~~~~~~~~~~~~g~~~~~~~-------~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~ 178 (385)
T TIGR01825 106 NQGVLSALLRKGDIVLSDELNHASIIDGLRLTKATKKIYK-------HADMDDLDRVLRENPSYGKKLIVTDGVFSMDGD 178 (385)
T ss_pred HHHHHHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhccCCCeEEEEecCCcCCCC
Confidence 6678888999999999999999999888888898887664 2688888887653 6788888888999999
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHH
Q 012095 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 323 (471)
Q Consensus 244 ~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~ 323 (471)
+.+ +++|.++|++| ++++|+||+|..+.++.........+....++++++.||||.+|++| ||+++++++++.
T Consensus 179 ~~~---~~~i~~l~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g---G~~~~~~~~~~~ 251 (385)
T TIGR01825 179 VAP---LPEIVELAERY-GAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGVVG---GYAAGHKELIEY 251 (385)
T ss_pred ccC---HHHHHHHHHHh-CCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhcCC---CEEecCHHHHHH
Confidence 999 88999999999 99999999998766542211111112212467899999999998766 999999999999
Q ss_pred HHHHHhcc--cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccC
Q 012095 324 CNKIQSQF--TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG 401 (471)
Q Consensus 324 l~~~~~~~--~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~ 401 (471)
+......+ ....+++.+.++.++++.. .++ .+..++++++++++.+.|+++ |+++..|.+++ +++.++..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~-~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-~~~~~~~~-- 323 (385)
T TIGR01825 252 LKNRARPFLFSTAQPPAVVAALAAAVDEL---QRS-PELMERLWDNTRFFKAGLGKL-GYDTGGSETPI-TPVVIGDE-- 323 (385)
T ss_pred HHHhCccccccCCCCHHHHHHHHHHHHHH---hcC-HHHHHHHHHHHHHHHHHHHHc-CCCCCCCCCCE-EEEEECCH--
Confidence 87654322 2234667777878877641 121 245677788899999999887 88887777765 44444421
Q ss_pred CcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC----CCcEEEEee--cCHHHHHHHHHHHHHHHHhh
Q 012095 402 SEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD----DTCIRISYA--ASLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 402 ~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~----~~~iRis~~--~~~e~i~~~~~~l~~~l~~~ 465 (471)
.+..++++.|+++ ||.+. +..|+. .+++|++++ .+++++++++++|+++++++
T Consensus 324 ---------~~~~~~~~~L~~~-gi~v~-~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~~ 382 (385)
T TIGR01825 324 ---------KAAQEFSRRLFDE-GIFAQ-SIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVGKEL 382 (385)
T ss_pred ---------HHHHHHHHHHHHC-CcEEc-ccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHHHHh
Confidence 1456899999887 99874 444432 268999876 39999999999999998754
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=265.67 Aligned_cols=362 Identities=17% Similarity=0.205 Sum_probs=280.4
Q ss_pred ccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCC--CCCCC---hHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHH
Q 012095 70 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGE--PDFDT---PVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICH 143 (471)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~--~~~~~---p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~ 143 (471)
+.+...++.++..+.+..+. +..++.|+|++|. ...+. -+.|.+|-...+.+ ....|.|..|.+++++.+++
T Consensus 3 ~~i~~~p~DpIlgL~e~f~~--D~R~~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~~~k~Yl~i~G~~~f~~~~~~ 80 (396)
T COG1448 3 EKIEAAPADPILGLKEAFKA--DPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEKTKNYLPIEGLPEFLEAVQK 80 (396)
T ss_pred cccccCCCCchhHHHHHHhc--CCCcCeeeeeeeeeeCCCCCcchhHHHHHHHHHhhccccccccCCcCCcHHHHHHHHH
Confidence 45566677777777665443 3345799999997 33222 35566666555544 35689999999999999999
Q ss_pred HHHHHhCCC---CCCCcE--EEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcC
Q 012095 144 KLKEENGLS---YTPDQI--LVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 216 (471)
Q Consensus 144 ~~~~~~g~~---~~~~~i--~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~l 216 (471)
++ +|.+ ++.++| +-|.|+|.||......+. .|..+|++++|+|+++..++..+|.++..+|+....+..+
T Consensus 81 ll---FG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~ 157 (396)
T COG1448 81 LL---FGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGL 157 (396)
T ss_pred Hh---cCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccc
Confidence 98 6754 444544 678999999998877663 4667899999999999999999999999999987777779
Q ss_pred CHHHHHhhhcc--CCcEEEE-cCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCC-CccccccCCCCCC
Q 012095 217 DPKVLESKLTE--KSRLLIL-CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA-THTSFASLPGMWE 292 (471)
Q Consensus 217 d~e~l~~~l~~--~~~~i~i-~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~ 292 (471)
|.+.+.+.|+. ...+|++ .+.|||||..++.++|++|+++.++. +++.+.|-+|.+|.-+-. ....+..+.....
T Consensus 158 df~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r-~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~ 236 (396)
T COG1448 158 DFDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKER-GLIPFFDIAYQGFADGLEEDAYALRLFAEVGP 236 (396)
T ss_pred cHHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHc-CCeeeeehhhhhhccchHHHHHHHHHHHHhCC
Confidence 99999998864 2234444 56699999999999999999999999 999999999998754321 1222222322234
Q ss_pred ceEEEecCCcccCccchhheeeEc---CHH----HHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHH---HHHHHH
Q 012095 293 RTLTVNGFSKAFAMTGWRLGYIAG---PKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEV---VSKMVK 362 (471)
Q Consensus 293 ~~i~~~S~SK~~g~~G~R~G~v~~---~~~----~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~---~~~~~~ 362 (471)
.++++.||||.||+.|-|+|.+.. +++ +..++..+.+...++|+..+..++...|+++.+..+| +..+++
T Consensus 237 ~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~ 316 (396)
T COG1448 237 ELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQ 316 (396)
T ss_pred cEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 489999999999999999998653 333 4455667777788889999999999999876554455 677899
Q ss_pred HHHHHHHHHHHHhcCC-CC--CeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCc
Q 012095 363 AFRERRDFLVKSFGEL-EG--VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTC 439 (471)
Q Consensus 363 ~~~~~r~~l~~~L~~~-~g--~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~ 439 (471)
++.++|..+.+.|++. ++ +.++..+.|||.+..+ +.+-+.+|.+++||+++...
T Consensus 317 Ri~~mR~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gl----------------s~~QV~rLree~~IY~v~sG------- 373 (396)
T COG1448 317 RILEMRQALVDALKALGAPRNFDFIISQRGMFSYTGL----------------SPEQVDRLREEFGIYLVASG------- 373 (396)
T ss_pred HHHHHHHHHHHHHHhhCCCcccchHhhcCceeecCCC----------------CHHHHHHHHHhccEEEecCC-------
Confidence 9999999999999983 23 7788889999988644 34556679999999998865
Q ss_pred EEEEeec-CHHHHHHHHHHHHHH
Q 012095 440 IRISYAA-SLTTLQAAVERIKKG 461 (471)
Q Consensus 440 iRis~~~-~~e~i~~~~~~l~~~ 461 (471)
||+++. ++.+++...+.|.++
T Consensus 374 -Ri~vaGl~~~ni~~va~ai~~v 395 (396)
T COG1448 374 -RINVAGLNTSNIDYVAKAIAAV 395 (396)
T ss_pred -eeeeccCChhhHHHHHHHHHhh
Confidence 999998 999999999988765
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=280.70 Aligned_cols=318 Identities=18% Similarity=0.229 Sum_probs=233.2
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhc
Q 012095 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC 176 (471)
Q Consensus 97 ~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~ 176 (471)
+|+|+++.++. +++.+++++.++. .+...|+|..+..+|+++|++++ | .+.+++++|+++++..++.+++
T Consensus 1 ~~~~~~~~~~~-p~~~~~~a~~~~~-~~~~~Y~~~~~~~~L~~~la~~~----g----~~~~~v~~~g~~a~~~~l~~~~ 70 (333)
T PRK10534 1 MIDLRSDTVTR-PSRAMLEAMMAAP-VGDDVYGDDPTVNALQDYAAELS----G----KEAALFLPTGTQANLVALLSHC 70 (333)
T ss_pred CcccccccCCC-CCHHHHHHHHhcc-CCCcccCCCHHHHHHHHHHHHHh----C----CCeEEEeCchHHHHHHHHHHhc
Confidence 48999999888 7788989887654 34567988889999999999985 3 2345677778878887888889
Q ss_pred CCCCeEEEcCCCCCC-hHHH-HHHcC-CEEEEecCCCCCCCcCCHHHHHhhhcc------CCcEEEEcCCCCCcccCCCH
Q 012095 177 SPGDEVIIPAPFWVS-YPEM-ARIAD-ATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPK 247 (471)
Q Consensus 177 ~~gd~Vlv~~p~y~~-~~~~-~~~~G-~~~~~v~~~~~~~~~ld~e~l~~~l~~------~~~~i~i~~p~NPtG~~~~~ 247 (471)
++||+|+++.|+|.. |... +...| ++++.++++ .+|.+|+++|++++++ ++++|++|||+ ||.+++.
T Consensus 71 ~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~~~ 146 (333)
T PRK10534 71 ERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAA--ADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NGKVLPR 146 (333)
T ss_pred CCCCeeEEechhhhhHhcCCchHHhcCceEEeecCC--CCCCCCHHHHHHhhcccCcCcccceEEEEecCC--CCeecCH
Confidence 999999999888853 3321 33444 677888764 4578999999999876 58899999776 5999999
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhhe-eeEcCHHHHHHHHH
Q 012095 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLG-YIAGPKHFVAACNK 326 (471)
Q Consensus 248 ~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G-~v~~~~~~i~~l~~ 326 (471)
+++++|+++|++| +++|++||+|........ ......+....++++ .||||.||++ +| |+++++++++.+.+
T Consensus 147 ~~l~~i~~~~~~~-~~~lvvDEA~~~~~~~~~-~~~~~~~~~~~~~~~--~s~SK~~~~~---~G~~~~~~~~~i~~~~~ 219 (333)
T PRK10534 147 EYLKQAWEFTRER-NLALHVDGARIFNAVVAY-GCELKEITQYCDSFT--ICLSKGLGTP---VGSLLVGNRDYIKRARR 219 (333)
T ss_pred HHHHHHHHHHHHc-CCeEEeeHHHHHHHHHHc-CCCHHHHHhcCCEEE--EEeEcCCCCc---ccceEEcCHHHHHHHHH
Confidence 9999999999999 999999999863211000 111112211113333 4899999864 67 68899999999998
Q ss_pred HHhcccCCC--ChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcc
Q 012095 327 IQSQFTSGA--SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEA 404 (471)
Q Consensus 327 ~~~~~~~~~--~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~ 404 (471)
+...+..+. +.+.|.++.++|++ .. +.++...++|+++.+.|+++ |+++.+| +++|+|++++..
T Consensus 220 ~~~~~~~~~~~~~~~~a~~~~~l~~------~~-~~~~~~~~~r~~l~~~L~~~-g~~~~~~-~~nfv~~~~~~~----- 285 (333)
T PRK10534 220 WRKMTGGGMRQAGILAAAGLYALKH------NV-ARLQEDHDNAAWLAEQLREA-GADVMRQ-DTNMLFVRVGEE----- 285 (333)
T ss_pred HHHHhCCchhhHHHHHHHHHHHHHh------hH-HHHHHHHHHHHHHHHHHHhC-CCccCCC-CceEEEEECCch-----
Confidence 876554333 34556666666642 12 22233445678999999998 8888777 477899998632
Q ss_pred cCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHHHHHHH
Q 012095 405 EGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERIKKGLL 463 (471)
Q Consensus 405 ~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~i~~~~~~l~~~l~ 463 (471)
+..++.+.|.+ .||.+.||. ++|++.+ .+.+++++++++|++++.
T Consensus 286 -------~~~~~~~~l~~-~gi~v~~~~------~~rl~~~~r~t~e~~~~~~~~l~~~~~ 332 (333)
T PRK10534 286 -------QAAALGEYMRE-RNVLINASP------IVRLVTHLDVSREQLAEVVAHWRAFLA 332 (333)
T ss_pred -------hHHHHHHHHHH-cCeeecCCc------eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence 45677766555 599999874 5788876 389999999999998764
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=253.78 Aligned_cols=332 Identities=23% Similarity=0.303 Sum_probs=257.6
Q ss_pred hcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHH
Q 012095 92 QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 171 (471)
Q Consensus 92 ~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~ 171 (471)
+.|++++.|..+++...|+|+-.+ --..| +..-..+++.+++.- .++++++|+++.|+.+.|..+
T Consensus 38 a~G~~iv~ld~~e~~ryPdP~q~e--------fk~~~-~d~rnk~ls~a~~~d------kpLt~dnic~GvGsDE~ID~i 102 (375)
T KOG0633|consen 38 ALGRDIVKLDANENPRYPDPEQME--------FKYVY-PDPRNKRLSDALAQD------KPLTSDNICVGVGSDELIDLI 102 (375)
T ss_pred hcCCCceEeccccCCCCcCHHHcc--------ccccc-CCcccchhhhhcccC------CCCCccceEEecCcHHHHHHH
Confidence 358889999999866555443321 12345 444455666665543 357899999999999999999
Q ss_pred HHHhcCCC-CeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc--cCCcEEEEcCCCCCcccCCCHH
Q 012095 172 VLAVCSPG-DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT--EKSRLLILCSPSNPTGSVYPKN 248 (471)
Q Consensus 172 ~~~l~~~g-d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~--~~~~~i~i~~p~NPtG~~~~~~ 248 (471)
+++.|.|| +.|+...|+|+.|.--+...+++++.+|+.+ +|.+|+|++.+.+. ..+|++++++|+||||..+..+
T Consensus 103 iR~~c~PGkeKIl~cPPtysMY~v~A~iNd~eVvkvpl~p--dF~lnvdai~evl~~ds~iK~~F~tSPgNPtg~~ik~~ 180 (375)
T KOG0633|consen 103 IRCVCDPGKEKILDCPPTYSMYVVDAAINDAEVVKVPLNP--DFSLNVDAIAEVLELDSKIKCIFLTSPGNPTGSIIKED 180 (375)
T ss_pred HhheecCCccceeecCCcceeEEEEeecCCceEEEecCCC--CccccHHHHHHHHhccccceEEEEcCCCCCCcccccHH
Confidence 99999999 8899999999999988899999999999976 68899999999885 3689999999999999999988
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHH
Q 012095 249 LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 328 (471)
Q Consensus 249 ~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~ 328 (471)
++++|.+-- .+.+|++||+|-+|.-.+ +-..+...+.|++++.+|||.||++|+|+||...+.++++.+.+.+
T Consensus 181 di~KiLe~p---~nglVVvDEAYidFsg~~----S~~~lV~kYpNLivlqTlSKsfGLAGiRvG~~~~~~~ia~iln~~K 253 (375)
T KOG0633|consen 181 DILKILEMP---DNGLVVVDEAYIDFSGVE----SRMKLVKKYPNLIVLQTLSKSFGLAGIRVGYGAFPLSIAEILNRAK 253 (375)
T ss_pred HHHHHHhCC---CCcEEEEeeeeEeecccc----ccchHhHhCCceeehhhhhhhcCcceeEeecccccHHHHHHHHhcc
Confidence 888887643 267888999999976422 2233344578999999999999999999999999999999999988
Q ss_pred hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCe-eeCCCcceEEeEecCCccCCcccCC
Q 012095 329 SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFSTYYGSEAEGF 407 (471)
Q Consensus 329 ~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~-~~~p~~g~~~~~~~~~~~~~~~~~~ 407 (471)
.+++ .+..+..+|.++|... ....++..++.+-+.|.++...|.+++++. +..+..+.|+.+++.+.-.
T Consensus 254 aPYN--iS~~~s~~AL~Als~~--n~kkme~~rdaiv~er~RL~keLt~v~~~~~~~gg~daNFiLi~v~~~~n------ 323 (375)
T KOG0633|consen 254 APYN--ISVAGSVAALAALSDS--NGKKMEDVRDAIVRERERLFKELTEVPFLNDYPGGSDANFILIEVTGGDN------ 323 (375)
T ss_pred CCcc--ccchhHHHHHHhcCcc--cchHHHHHHHHHHHHHHHHHHHhhcCccccCCCCcccccEEEEEEcCCCc------
Confidence 8766 6788888899999853 246688888889999999999999988775 3344445568888864310
Q ss_pred CCCCCHHHHHHHHHHcCCEEEEC-CCCCCCCCcEEEEeecCHHHHHHHHHHHHHH
Q 012095 408 GKIENSESLCRYLLDKAQVALVP-GDAFGDDTCIRISYAASLTTLQAAVERIKKG 461 (471)
Q Consensus 408 ~~~~~~~~l~~~Ll~~~gV~v~p-g~~f~~~~~iRis~~~~~e~i~~~~~~l~~~ 461 (471)
..+..+..+++.+.||.|+- |+..+..|++|++.+.++|+ .-.++-|+++
T Consensus 324 ---~~akkly~q~at~~gVvVRfrgse~~c~G~lRitvGt~Een-tvL~k~~K~~ 374 (375)
T KOG0633|consen 324 ---GMAKKLYKQDATKMGVVVRFRGSEEGCKGYLRITVGTPEEN-TVLMKCLKQF 374 (375)
T ss_pred ---HHHHHHHHHHHHhcceEEEEcCCccccceeEEEEcCCcccc-hHHHHHHHhh
Confidence 13456666677778998864 55566789999999986543 4445544443
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=276.33 Aligned_cols=334 Identities=19% Similarity=0.185 Sum_probs=248.2
Q ss_pred hcCCCeEEcCCCCC-CCCChHHHHHHHHHHHHcC---CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHH
Q 012095 92 QAGVSVIRLAAGEP-DFDTPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (471)
Q Consensus 92 ~~g~~~i~l~~g~~-~~~~p~~v~~a~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~a 167 (471)
..|+++|+|+.|++ .+.+++.+++++.+++... ...|....|...+++.+++.+.+.+| .++.|++++| +++
T Consensus 36 ~~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~---~~~~i~~~~g-~~~ 111 (385)
T PRK05958 36 VDGRRMLNFASNDYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFG---AERALLFSSG-YAA 111 (385)
T ss_pred eCCceEEEeeCCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC---CCcEEEECcH-HHH
Confidence 36889999999975 4556788999999988651 22233445666777777777777776 3455665555 455
Q ss_pred HHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccC---CcEEEEcCCCCCcccC
Q 012095 168 ILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK---SRLLILCSPSNPTGSV 244 (471)
Q Consensus 168 l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~---~~~i~i~~p~NPtG~~ 244 (471)
+..+++.++++||.|++++|+|+.+...++..|++++.++. .|++.+++.+++. +.++++.+++||||..
T Consensus 112 ~~~~l~~~~~~gd~V~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~ 184 (385)
T PRK05958 112 NLAVLTALAGKGDLIVSDKLNHASLIDGARLSRARVRRYPH-------NDVDALEALLAKWRAGRALIVTESVFSMDGDL 184 (385)
T ss_pred HHHHHHHhCCCCCEEEEeCccCHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhccCCCeEEEEEecccCCCCc
Confidence 66677888999999999999999999999999999988874 3889999988652 4455566789999998
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCC--CccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHH
Q 012095 245 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA--THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA 322 (471)
Q Consensus 245 ~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~ 322 (471)
.+ +++|+++|++| |++||+||+|..+.++.. .......+. ..++++++.||||.+|++| ||+++++++++
T Consensus 185 ~~---l~~i~~ia~~~-~~~li~De~~~~g~~~~~g~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G---g~~~~~~~~~~ 256 (385)
T PRK05958 185 AP---LAELVALARRH-GAWLLVDEAHGTGVLGPQGRGLAAEAGLA-GEPDVILVGTLGKALGSSG---AAVLGSETLID 256 (385)
T ss_pred CC---HHHHHHHHHHh-CCEEEEECcccccccCCCCCchHHhhCCC-CCCceEEEEechhhcccCC---cEEEcCHHHHH
Confidence 88 89999999999 999999999986655421 111111232 2467899999999999777 99999999988
Q ss_pred HHHHHHhcc--cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCcc
Q 012095 323 ACNKIQSQF--TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYY 400 (471)
Q Consensus 323 ~l~~~~~~~--~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~ 400 (471)
.+......+ ..+.+++.+.++.++|+.. ... ..+.+++.++++++.+.|+++ |+++.++.++| +|+.+++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~aa~~aal~~~---~~~-~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~-~~~~~~~~- 329 (385)
T PRK05958 257 YLINRARPFIFTTALPPAQAAAARAALRIL---RRE-PERRERLAALIARLRAGLRAL-GFQLMDSQSAI-QPLIVGDN- 329 (385)
T ss_pred HHHHhCccceecCCCCHHHHHHHHHHHHHH---hcC-HHHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCE-EEEEeCCH-
Confidence 876543222 2335555555666777641 222 567788999999999999987 77777676665 67777642
Q ss_pred CCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012095 401 GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAA--SLTTLQAAVERIKKGL 462 (471)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~---~~~iRis~~~--~~e~i~~~~~~l~~~l 462 (471)
.++.++.++|.++ ||.+.++..+.. ++++|++++. +++++++++++|++++
T Consensus 330 ----------~~~~~~~~~l~~~-gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~~ 385 (385)
T PRK05958 330 ----------ERALALAAALQEQ-GFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEAL 385 (385)
T ss_pred ----------HHHHHHHHHHHHC-CceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhcC
Confidence 1567899998765 999998655432 3689999984 8999999999998753
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=276.62 Aligned_cols=333 Identities=17% Similarity=0.183 Sum_probs=241.6
Q ss_pred CCCeEEcCCCC-CCCCChHHHHHHHHHHHHcCCC-------CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChH
Q 012095 94 GVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFT-------RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165 (471)
Q Consensus 94 g~~~i~l~~g~-~~~~~p~~v~~a~~~~~~~~~~-------~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~ 165 (471)
|++.++++.++ .++++++.+++++.+++..... .|+......+|++.++++ +| .++.|++++|+
T Consensus 45 ~~~~~~~~sn~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~----~g---~~~~i~~~sG~- 116 (410)
T PRK13392 45 PRRVTIWCSNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADL----HG---KESALLFTSGY- 116 (410)
T ss_pred CceEEEEECCCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHH----hC---CCCEEEECcHH-
Confidence 45688888876 7888899999999998865211 121111234455555555 55 35678888875
Q ss_pred HHHHHHHHHhc--CCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhh----ccCCcEEEEcCCCC
Q 012095 166 QSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL----TEKSRLLILCSPSN 239 (471)
Q Consensus 166 ~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l----~~~~~~i~i~~p~N 239 (471)
+++..++..++ .+||.|+++...|.++...++..|+++..++.+ |.+.+++.+ .+++++|++++|+|
T Consensus 117 ~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~t~~v~i~~~~n 189 (410)
T PRK13392 117 VSNDAALSTLGKLLPGCVILSDALNHASMIEGIRRSGAEKQVFRHN-------DLADLEEQLASVDPDRPKLIAFESVYS 189 (410)
T ss_pred HHHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHHHcCCeEEEEeCC-------CHHHHHHHHHhccCCCCEEEEEeCCCC
Confidence 55665666664 389989888888888888888899998776532 444454444 35788999999999
Q ss_pred CcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCc-eEEEecCCcccCccchhheeeEcCH
Q 012095 240 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER-TLTVNGFSKAFAMTGWRLGYIAGPK 318 (471)
Q Consensus 240 PtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~-~i~~~S~SK~~g~~G~R~G~v~~~~ 318 (471)
|||.+++ +++|.++|++| ++++|+||+|....+++.+. .+....+..++ .++++||||.||++| ||+++++
T Consensus 190 ~tG~~~~---l~~i~~l~~~~-~~~livDea~~~g~~g~~g~-g~~~~~~~~~~~div~~tlsK~~g~~G---G~~~~~~ 261 (410)
T PRK13392 190 MDGDIAP---IEAICDLADRY-NALTYVDEVHAVGLYGARGG-GIAERDGLMDRIDMIQGTLAKAFGCLG---GYIAASA 261 (410)
T ss_pred CCccccc---HHHHHHHHHHc-CCEEEEECCccccCcCCCCC-chhhhccCCCCCcEEEEEChHhhhccc---chhhcCH
Confidence 9999999 88999999999 99999999999655543221 11121111122 388999999999998 9999999
Q ss_pred HHHHHHHHHHhcc--cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEec
Q 012095 319 HFVAACNKIQSQF--TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF 396 (471)
Q Consensus 319 ~~i~~l~~~~~~~--~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~ 396 (471)
++++.+++....+ +.+.+++.+.++.++|+. .+.....++.++++++++.+.|+++ |+++.++.++|+ .+.+
T Consensus 262 ~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~-~i~~ 335 (410)
T PRK13392 262 DLIDFVRSFAPGFIFTTALPPAVAAGATAAIRH----LKTSQTERDAHQDRVAALKAKLNAN-GIPVMPSPSHIV-PVMV 335 (410)
T ss_pred HHHHHHHHhCcchhccCcCCHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCCCEE-EEEe
Confidence 9999888776543 444566788888888875 2333455677899999999999987 888877777764 3444
Q ss_pred CCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012095 397 STYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAA--SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~---~~~iRis~~~--~~e~i~~~~~~l~~~l~~~~ 466 (471)
+.. .+..+++++|++++||.+.++..... ..++|+++.. ++++++++++.|.++++++.
T Consensus 336 ~~~-----------~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~~~~~~ 399 (410)
T PRK13392 336 GDP-----------TLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAIWDRLE 399 (410)
T ss_pred CCH-----------HHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHcC
Confidence 321 13568899888767999998764432 3689999974 89999999999999987653
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=270.91 Aligned_cols=333 Identities=19% Similarity=0.215 Sum_probs=247.2
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCC--CCC-------CCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRY--TPN-------AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y--~~~-------~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~ 166 (471)
+.+.|..+.-.. +|..+.+++.+.+.+...+. +.. ....++|+.++++ +|.. ++++|++|+|+++
T Consensus 19 ~~~yld~a~~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~----~g~~-~~~~i~~~~~~t~ 92 (401)
T PRK10874 19 AGVYLDSAATAL-KPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQL----LNAP-DAKNIVWTRGTTE 92 (401)
T ss_pred ceEEEeCCcccC-CCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHH----cCCC-CCCEEEEECCHHH
Confidence 478888877653 56788899988776422111 010 1133455555555 4532 6789999999999
Q ss_pred HHHHHHHHh----cCCCCeEEEcCCCCCC----hHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCC
Q 012095 167 SILQAVLAV----CSPGDEVIIPAPFWVS----YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 238 (471)
Q Consensus 167 al~~~~~~l----~~~gd~Vlv~~p~y~~----~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~ 238 (471)
++..+++++ +++||+|++++|.|++ +...++..|++++.++.+. ++.+|++++++.++++++++++++|+
T Consensus 93 ~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~t~lv~i~~~~ 170 (401)
T PRK10874 93 SINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGA--DRLPDVDLLPELITPRTRILALGQMS 170 (401)
T ss_pred HHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCC--CCcCCHHHHHHhcCcCcEEEEEeCCc
Confidence 999999987 3799999999999876 4456688899999999863 46789999999999999999999999
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCH
Q 012095 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 318 (471)
Q Consensus 239 NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~ 318 (471)
||||.+++ +++|+++|+++ ++++|+|++|....+ ...+.. .+..+++.|++|.+|.+| +||+++++
T Consensus 171 n~tG~~~~---~~~i~~l~~~~-g~~~ivD~a~~~g~~----~~~~~~----~~~d~~~~s~~K~~gp~G--~G~l~~~~ 236 (401)
T PRK10874 171 NVTGGCPD---LARAITLAHQA-GMVVMVDGAQGAVHF----PADVQA----LDIDFYAFSGHKLYGPTG--IGVLYGKS 236 (401)
T ss_pred ccccCcCC---HHHHHHHHHHc-CCEEEEECCcccccc----cCCchh----cCCCEEEEecccccCCCc--cEEEEEch
Confidence 99999999 88999999999 999999999964222 112211 234588899999988666 69999999
Q ss_pred HHHHHHHHHH---------------------hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC
Q 012095 319 HFVAACNKIQ---------------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377 (471)
Q Consensus 319 ~~i~~l~~~~---------------------~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 377 (471)
++++.+..+. +....+++...+.++.++++.. .+.......++.++.++++.+.|++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l--~~~g~~~~~~~~~~l~~~l~~~l~~ 314 (401)
T PRK10874 237 ELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWL--ADIDINQAESWSRSLATLAEDALAK 314 (401)
T ss_pred HHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHHhc
Confidence 9888764221 1111245556666777766531 0222455677778889999999999
Q ss_pred CCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC--------CCCCcEEEEeec--C
Q 012095 378 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF--------GDDTCIRISYAA--S 447 (471)
Q Consensus 378 ~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f--------~~~~~iRis~~~--~ 447 (471)
++|+.+..+..+.++++.+++. +..++.+.|.+ +||.+.+|..+ +..+++|+|++. +
T Consensus 315 ~~g~~~~~~~~~~i~~~~~~~~------------~~~~~~~~L~~-~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt 381 (401)
T PRK10874 315 LPGFRSFRCQDSSLLAFDFAGV------------HHSDLVTLLAE-YGIALRAGQHCAQPLLAALGVTGTLRASFAPYNT 381 (401)
T ss_pred CCCEEEeCCCCCcEEEEEECCc------------CHHHHHHHHHH-CCcEEeccccchHHHHHHhCCCCEEEEEecccCC
Confidence 8898877555555566677642 56788887755 59999998865 346899999997 8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 012095 448 LTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 448 ~e~i~~~~~~l~~~l~~~ 465 (471)
+++++++++.|+++++.+
T Consensus 382 ~edid~ll~al~~~~~~~ 399 (401)
T PRK10874 382 QSDVDALVNAVDRALELL 399 (401)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 899999999999988764
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=270.39 Aligned_cols=333 Identities=20% Similarity=0.211 Sum_probs=246.6
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcC--CCCCCCCCC-------CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREG--FTRYTPNAG-------TLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~--~~~Y~~~~G-------~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~ 166 (471)
+.+.|..+.-.. +|+.+.+++.+.+... ..++++..+ ..++|+.+++++ |.. ++++|++|+|+++
T Consensus 16 ~~iyld~a~~~~-~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g~~-~~~~i~~t~g~t~ 89 (398)
T TIGR03392 16 GTVYLDSAATAL-KPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFL----NAP-DAENIVWTRGTTE 89 (398)
T ss_pred CeEEeeCccccC-CCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHh----CCC-CCCeEEEeCChHH
Confidence 478888887663 5778899988877532 122222211 334666666665 432 4689999999999
Q ss_pred HHHHHHHHh----cCCCCeEEEcCCCCCC----hHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCC
Q 012095 167 SILQAVLAV----CSPGDEVIIPAPFWVS----YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 238 (471)
Q Consensus 167 al~~~~~~l----~~~gd~Vlv~~p~y~~----~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~ 238 (471)
++..++.++ +++||+|++++|.|++ +...++..|++++.++++. ++.+|+++++++++++++++++++|+
T Consensus 90 ~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~~~~~l~~~i~~~t~lv~i~~~~ 167 (398)
T TIGR03392 90 SINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGA--DLLPDIRQLPELLTPRTRILALGQMS 167 (398)
T ss_pred HHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCC--CCCcCHHHHHHHhccCceEEEEECcc
Confidence 999999887 4789999999999876 3456788999999999864 35689999999999999999999999
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCH
Q 012095 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 318 (471)
Q Consensus 239 NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~ 318 (471)
||||.+++ +++|+++|+++ ++++++|++|....+ ...+.. .+..+++.|++|.+|.+| +||+++++
T Consensus 168 n~tG~~~~---~~~i~~~~~~~-~~~~ivD~a~~~~~~----~~~~~~----~~~d~~~~s~~K~~gp~G--~G~l~~~~ 233 (398)
T TIGR03392 168 NVTGGCPD---LARAITLAHQY-GAVVVVDGAQGVVHG----PPDVQA----LDIDFYAFSGHKLYGPTG--IGVLYGKT 233 (398)
T ss_pred ccccccCC---HHHHHHHHHHc-CCEEEEEhhhhcCCC----CCChhh----cCCCEEEEecccccCCCc--eEEEEEcH
Confidence 99999999 88899999999 999999999975322 112211 234477888889998666 89999999
Q ss_pred HHHHHHHHHH---------------------hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC
Q 012095 319 HFVAACNKIQ---------------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377 (471)
Q Consensus 319 ~~i~~l~~~~---------------------~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 377 (471)
++++.+.... +....+++.....++.++++.- .+...+++.++.++.++++.+.|.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l--~~~g~~~i~~~~~~l~~~l~~~l~~ 311 (398)
T TIGR03392 234 ELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWL--TDIDIAAAEAWSVSLADLAEERLAQ 311 (398)
T ss_pred HHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHHhc
Confidence 9887764221 0011234555666666666531 1223456777788889999999999
Q ss_pred CCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC--------CCCCcEEEEeec--C
Q 012095 378 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF--------GDDTCIRISYAA--S 447 (471)
Q Consensus 378 ~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f--------~~~~~iRis~~~--~ 447 (471)
++|+.+..+..++++++.+++. +..++.+.|.+ +||.+.+|..+ +.+++||+|++. +
T Consensus 312 l~g~~~~~~~~~~i~~~~~~~~------------~~~~l~~~L~~-~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t 378 (398)
T TIGR03392 312 LPGFRSFRCPGSSLLAFDFAGV------------HHSDLAALLAE-SGIALRAGQHCAQPLMAALGVSGTLRASFAPYNT 378 (398)
T ss_pred CCCeEEeCCCCCcEEEEEeCCc------------CHHHHHHHHHh-CCEEEecCccchHHHHHHhCCCCEEEEEeeccCC
Confidence 8898876544455566666642 56788888765 59999999855 335799999986 8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 012095 448 LTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 448 ~e~i~~~~~~l~~~l~~~ 465 (471)
++|++++++.|+++++++
T Consensus 379 ~~ei~~l~~~l~~~~~~~ 396 (398)
T TIGR03392 379 QQDVDALVDAVGAALELL 396 (398)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 899999999999988764
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=272.29 Aligned_cols=338 Identities=17% Similarity=0.201 Sum_probs=247.3
Q ss_pred cCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|..+||+..|.+ .+++ ++.+.+++.+++.... +....+..++++.+++++.+..| .+++++++|+++++.
T Consensus 37 dg~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~--~~~~~~~~~~~~~la~~l~~~~~----~~~v~~~~gg~eA~~ 110 (396)
T PRK02627 37 DGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLI--HTSNLYYIEPQEELAEKLVELSG----MDKVFFCNSGAEANE 110 (396)
T ss_pred CCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhcc--ccccccCCHHHHHHHHHHHhhcC----CCEEEECCCcHHHHH
Confidence 6788999999864 4555 5889999999886532 11223346889999999987754 379999999999999
Q ss_pred HHHHHhcCCC-------CeEEEcCCCCCChHHHHHHcCCEEE----EecCCCCCCC----cCCHHHHHhhhccCCcEEEE
Q 012095 170 QAVLAVCSPG-------DEVIIPAPFWVSYPEMARIADATPV----ILPTRISENF----LLDPKVLESKLTEKSRLLIL 234 (471)
Q Consensus 170 ~~~~~l~~~g-------d~Vlv~~p~y~~~~~~~~~~G~~~~----~v~~~~~~~~----~ld~e~l~~~l~~~~~~i~i 234 (471)
.+++.+...+ +.|++.+++|.++.......+.... ..++. .++ ..|++++++++.+++++|++
T Consensus 111 ~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~l~~~i~~~~~~vii 188 (396)
T PRK02627 111 AAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLV--EGFIYVPFNDIEALKAAITDKTAAVML 188 (396)
T ss_pred HHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCC--CCceEeCCCCHHHHHHhcCCCeEEEEE
Confidence 9999765433 6799999999988766555443221 11211 121 12899999999888999999
Q ss_pred cCCCCCcc-cCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhhee
Q 012095 235 CSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 313 (471)
Q Consensus 235 ~~p~NPtG-~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~ 313 (471)
+.++||+| .+++++.+++|.++|++| +++||+||+|.++.+.+. ...+.... .... +.||||.++ +|+|+||
T Consensus 189 ~p~~~~~G~~~~~~~~l~~l~~l~~~~-~~~lI~DE~~~g~g~~g~-~~~~~~~~-~~pd---i~t~sK~~~-~G~rig~ 261 (396)
T PRK02627 189 EPIQGEGGVNPADKEYLQALRELCDEN-GILLILDEVQTGMGRTGK-LFAYQHYG-IEPD---IMTLAKGLG-GGVPIGA 261 (396)
T ss_pred ecccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhcCCCccCc-eeeehhcC-CCCC---EEEEcchhh-CCcccEE
Confidence 88899999 789999999999999999 999999999998765542 11211111 1122 347999999 9999999
Q ss_pred eEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEe
Q 012095 314 IAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 393 (471)
Q Consensus 314 v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~ 393 (471)
+++++++++.+.......+++.+++.|.++.++|+.... .++.+..++..+..++.+.+.+.+.+.+.... ..|+++|
T Consensus 262 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~ 339 (396)
T PRK02627 262 VLAKEKVADVFTPGDHGSTFGGNPLACAAALAVIEIIEE-EGLLENAAEVGEYLRAKLRELLEKYPGIKEVR-GLGLMIG 339 (396)
T ss_pred EEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHhCCCeeeec-cCcEEEE
Confidence 999999998886554556778999999999999975221 23444444444444454544444443333333 3467788
Q ss_pred EecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHHHHHHHhh
Q 012095 394 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~~ 465 (471)
+.++. +..++++.|+++ ||.+.|+. .+++|++++ .+++++++++++|+++++++
T Consensus 340 i~~~~-------------~~~~~~~~l~~~-Gv~v~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~l~~~ 395 (396)
T PRK02627 340 IELDR-------------PAAEIVKKALEK-GLLINVTG----DNVLRLLPPLIISKEEIDEAVDRLEEVLKEL 395 (396)
T ss_pred EEecC-------------cHHHHHHHHHHC-CeEEeecC----CCEEEEECCcccCHHHHHHHHHHHHHHHHhh
Confidence 88732 578899999887 99999964 368999875 48999999999999998765
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=275.45 Aligned_cols=336 Identities=18% Similarity=0.194 Sum_probs=239.1
Q ss_pred CCCeEEcCCCC-CCCCC-----hHHHHHHHHHHHHc---CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCCh
Q 012095 94 GVSVIRLAAGE-PDFDT-----PVLIAEAGINAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 164 (471)
Q Consensus 94 g~~~i~l~~g~-~~~~~-----p~~v~~a~~~~~~~---~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~ 164 (471)
+++.++|++++ ..+.. ++.+.+++.+.... ....|+...+..+|++.++++++ .++.|++++|.
T Consensus 99 ~~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g-------~~~ai~~~~G~ 171 (489)
T PLN02483 99 TRRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVG-------KPAAIVFGMGY 171 (489)
T ss_pred CceEEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhC-------CCcEEEECCHH
Confidence 45789999887 55542 24455554443211 12337667777888888888864 46788888876
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc-------cCC-----cEE
Q 012095 165 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT-------EKS-----RLL 232 (471)
Q Consensus 165 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~-------~~~-----~~i 232 (471)
...+ .++.+++++||.|++++|+|+++...++..|++++.++.+ |.+++++.++ +++ +++
T Consensus 172 ~an~-~~i~al~~~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~-------d~~~le~~l~~~i~~~~p~t~~p~~k~l 243 (489)
T PLN02483 172 ATNS-TIIPALIGKGGLIISDSLNHNSIVNGARGSGATIRVFQHN-------TPSHLEEVLREQIAEGQPRTHRPWKKII 243 (489)
T ss_pred HHHH-HHHHHhCCCCCEEEEcchhhHHHHHHHHHcCCeEEEEeCC-------CHHHHHHHHHhhhhccccccccCCceEE
Confidence 6554 5778899999999999999999999999999999999863 4455555442 222 556
Q ss_pred EEcCC-CCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCC--CCccccccCCCCCCceEEEecCCcccCccch
Q 012095 233 ILCSP-SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP--ATHTSFASLPGMWERTLTVNGFSKAFAMTGW 309 (471)
Q Consensus 233 ~i~~p-~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~ 309 (471)
+++++ .|++|...+ +++|+++|++| +++||+||+|....++. .....+..+.. .+.+|+++||||+||++|
T Consensus 244 ivve~v~s~~G~~~~---l~~I~~la~~~-~~~livDEa~s~g~~G~~G~g~~~~~~v~~-~~~dI~~~SfSKs~g~~G- 317 (489)
T PLN02483 244 VIVEGIYSMEGELCK---LPEIVAVCKKY-KAYVYLDEAHSIGAVGKTGRGVCELLGVDP-ADVDIMMGTFTKSFGSCG- 317 (489)
T ss_pred EEECCCCCCCCcccC---HHHHHHHHHHc-CCEEEEECcCccCccCCCCCchHHhcCCCc-ccCcEEEEecchhcccCc-
Confidence 65554 699999998 99999999999 99999999998544332 12222333322 467899999999999888
Q ss_pred hheeeEcCHHHHHHHHHHHhcc--cCCCChHHHHHHHHHHhc--cCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC
Q 012095 310 RLGYIAGPKHFVAACNKIQSQF--TSGASSISQKAGVAALGL--GYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385 (471)
Q Consensus 310 R~G~v~~~~~~i~~l~~~~~~~--~~~~~~~~q~aa~~~L~~--~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~ 385 (471)
||+++++++++.+....... ..+.++....++.++|+. .....++..+.+++++++++++.+.|.++ |+.+..
T Consensus 318 --G~i~~~~~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~-G~~v~~ 394 (489)
T PLN02483 318 --GYIAGSKELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM-GFEVLG 394 (489)
T ss_pred --eEEEcCHHHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHC-CCcccC
Confidence 99999999999998764322 222233333334555531 00012445566889999999999999998 888776
Q ss_pred CCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC-CC---CCcEEEEeec--CHHHHHHHHHHHH
Q 012095 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF-GD---DTCIRISYAA--SLTTLQAAVERIK 459 (471)
Q Consensus 386 p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f-~~---~~~iRis~~~--~~e~i~~~~~~l~ 459 (471)
+.+++.+|+.+... .+..++++.|+++ ||.++| ..| .. .+++|++++. ++|+|++++++|+
T Consensus 395 ~~~sp~~~l~l~~~-----------~~~~~~~~~Ll~~-GI~v~~-~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~ 461 (489)
T PLN02483 395 DNDSPVMPIMLYNP-----------AKIPAFSRECLKQ-NVAVVV-VGFPATPLLLARARICISASHSREDLIKALEVIS 461 (489)
T ss_pred CCCCCEEEEEECCH-----------HHHHHHHHHHHHC-CcEEee-eCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 66666677665432 1456799998876 999997 444 22 3689999875 8999999999999
Q ss_pred HHHHhhC
Q 012095 460 KGLLTLR 466 (471)
Q Consensus 460 ~~l~~~~ 466 (471)
++++.+.
T Consensus 462 ~~~~~~~ 468 (489)
T PLN02483 462 EVGDLVG 468 (489)
T ss_pred HHHHHhC
Confidence 9987643
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=266.06 Aligned_cols=328 Identities=19% Similarity=0.291 Sum_probs=230.1
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHH-HHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh
Q 012095 97 VIRLAAGEPDFDTPVLIAEAGINA-IREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 175 (471)
Q Consensus 97 ~i~l~~g~~~~~~p~~v~~a~~~~-~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l 175 (471)
+++|+.|.++. +++.+.+++.+. .......| .....+|+++++++++ .+.+++++++++++..++.++
T Consensus 7 ~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~--~~~~~~l~~~la~~~~--------~~~~~~~~~Gs~a~~~~l~~~ 75 (353)
T PLN02721 7 VVDLRSDTVTK-PTDAMRAAMANAEVDDDVLGY--DPTALRLEEEMAKIFG--------KEAALFVPSGTMGNLISVLVH 75 (353)
T ss_pred hhhhhcccccC-CCHHHHHHHHhccCCCcccCC--CHHHHHHHHHHHHHhC--------CceeEEecCccHHHHHHHHHH
Confidence 68999999986 567788887754 22223334 3347899999999974 123455555555566777777
Q ss_pred cC-CCCeEEEcCCCCCChHH---HHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc-------cCCcEEEEcC-CCCCccc
Q 012095 176 CS-PGDEVIIPAPFWVSYPE---MARIADATPVILPTRISENFLLDPKVLESKLT-------EKSRLLILCS-PSNPTGS 243 (471)
Q Consensus 176 ~~-~gd~Vlv~~p~y~~~~~---~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~-------~~~~~i~i~~-p~NPtG~ 243 (471)
++ +||+|++++|+|..... .+...|++++.+|.+ .++.+|++.++++++ +++++|++++ ++||||.
T Consensus 76 ~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~ 153 (353)
T PLN02721 76 CDVRGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNN--EDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGR 153 (353)
T ss_pred ccCCCCeEEEcCccceehhcccchhhhcCceeEecCCC--cCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCc
Confidence 77 99999999999865544 577889999999875 346689999999997 5789999976 5789999
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhhee-eEcCHHHHH
Q 012095 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGPKHFVA 322 (471)
Q Consensus 244 ~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~-v~~~~~~i~ 322 (471)
+++.+++++|.++|++| |++||+||+|........ ......+....+ .++.||||.++. ++|| +++++++++
T Consensus 154 ~~~~~~l~~l~~l~~~~-g~~livD~a~~~~~~~~~-~~~~~~~~~~~d--~~~~s~sK~l~~---~~G~~~~~~~~~~~ 226 (353)
T PLN02721 154 CLSVEYTDKVGELAKRH-GLKLHIDGARIFNASVAL-GVPVHRLVKAAD--SVSVCLSKGLGA---PVGSVIVGSKSFIR 226 (353)
T ss_pred cccHHHHHHHHHHHHHc-CCEEEEEchhhhcchhhh-CCCHHHHhhhCC--EEEEecccccCC---ceeeEEecCHHHHH
Confidence 99999999999999999 999999999853211000 011111111122 445579999873 3576 678999999
Q ss_pred HHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCee--eCCCcceEEeEecCCcc
Q 012095 323 ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM--SEPQGAFYLFIDFSTYY 400 (471)
Q Consensus 323 ~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~--~~p~~g~~~~~~~~~~~ 400 (471)
.+.........+++...+.++..... .+++++.+.+ ..++++.+.+.|++++|+.+ .+|.++ |+|++++...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~-~~~~~~~l~~~L~~~~~~~~~~~~~~~~-~~~~~~~~~~ 300 (353)
T PLN02721 227 KAKRLRKTLGGGMRQVGVLAAAALVA----LQENVPKLED-DHKKAKLLAEGLNQIKGLRVNVAAVETN-IVYFDITDGS 300 (353)
T ss_pred hHHHHHHhcCCCeehhHHHHHHHHHH----HHHHHHHHHH-HHHHHHHHHHHHHhCCCcEEecCCccce-EEEEEccCCc
Confidence 88777655443344443333322222 1344444333 35677899999998878744 445554 5898887420
Q ss_pred CCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012095 401 GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~ 464 (471)
+ .+..+++++|.+ +||.+.|+. ++++|++++. +++++++++++|++++..
T Consensus 301 ~---------~~~~~~~~~L~~-~gi~v~~~~----~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~ 352 (353)
T PLN02721 301 R---------ITAEKLCKSLEE-HGVLLMPGN----SSRIRVVTHHQISDSDVQYTLSCFQQAALT 352 (353)
T ss_pred c---------ccHHHHHHHHHh-CCcEEecCC----CceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence 0 157789999875 599999974 4689999973 889999999999988753
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-31 Score=261.05 Aligned_cols=330 Identities=19% Similarity=0.205 Sum_probs=241.2
Q ss_pred CeEEcCCCC-CCCCChHHHHHHHHHHHHcCCCC---CCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHH
Q 012095 96 SVIRLAAGE-PDFDTPVLIAEAGINAIREGFTR---YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 171 (471)
Q Consensus 96 ~~i~l~~g~-~~~~~p~~v~~a~~~~~~~~~~~---Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~ 171 (471)
++++|+.++ ...+.|+++.+++.+++.+...+ |....|..++.+.+.+.+.+.+|. ++. ++++++++++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~---~~~-iv~~sg~~a~~~~ 77 (349)
T cd06454 2 KVLNFCSNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGK---EAA-LVFSSGYAANDGV 77 (349)
T ss_pred CceecccCCccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCC---CCE-EEeccHHHHHHHH
Confidence 467888777 55555789999999998753222 222335556666666666666663 234 5555556788878
Q ss_pred HHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc-----CCcEEEEcCCCCCcccCCC
Q 012095 172 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-----KSRLLILCSPSNPTGSVYP 246 (471)
Q Consensus 172 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~-----~~~~i~i~~p~NPtG~~~~ 246 (471)
+++++++||.|++++|+|.++...++..|++++.++. +|++.+++.+++ +++++++++|+||||...+
T Consensus 78 ~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~ 150 (349)
T cd06454 78 LSTLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFKH-------NDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAP 150 (349)
T ss_pred HHHhcCCCCEEEEehhhhHHHHHHHHHcCCceEEecC-------CCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccC
Confidence 8888999999999999999999889999999988762 477888888753 4677778999999999988
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCc-cccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHH
Q 012095 247 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 325 (471)
Q Consensus 247 ~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~ 325 (471)
+++|+++|++| ++++|+|++|....+..... ...... ...+.+++++|+||.++++| ||+++++++++.+.
T Consensus 151 ---~~~i~~~~~~~-~~~livD~a~~~g~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~g---G~i~~~~~~~~~~~ 222 (349)
T cd06454 151 ---LPELVDLAKKY-GAILFVDEAHSVGVYGPHGRGVEEFGG-LTDDVDIIMGTLGKAFGAVG---GYIAGSKELIDYLR 222 (349)
T ss_pred ---HHHHHHHHHHc-CCEEEEEccccccccCCCCCChhhhcc-ccccCcEEEeechhhhcccC---CEEECCHHHHHHHH
Confidence 88999999999 99999999997543322111 111111 22467899999999998655 99999999988877
Q ss_pred HHHhcc--cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCc
Q 012095 326 KIQSQF--TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSE 403 (471)
Q Consensus 326 ~~~~~~--~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~ 403 (471)
.....+ ....++..+.++.++|+.. .+ .+..+++++++++.+.+.|.++ |+.+..+.++++.++.+++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~-~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~~~~~~---- 293 (349)
T cd06454 223 SYARGFIFSTSLPPAVAAAALAALEVL---QG-GPERRERLQENVRYLRRGLKEL-GFPVGGSPSHIIPPLIGDDP---- 293 (349)
T ss_pred HhchhhhccCCCCHHHHHHHHHHHHHH---hc-CHHHHHHHHHHHHHHHHHHHhc-CCcccCCCCCcEEEEeCCCh----
Confidence 654332 2345666777777777641 22 4667888999999999999887 77776665666555544421
Q ss_pred ccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC---CCCcEEEEeec--CHHHHHHHHHHHHHH
Q 012095 404 AEGFGKIENSESLCRYLLDKAQVALVPGDAFG---DDTCIRISYAA--SLTTLQAAVERIKKG 461 (471)
Q Consensus 404 ~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~---~~~~iRis~~~--~~e~i~~~~~~l~~~ 461 (471)
.+..++.+.|.++ ||.+.++.... ..+++|++++. +++++++++++|+++
T Consensus 294 -------~~~~~~~~~L~~~-gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 294 -------AKAVAFSDALLER-GIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred -------HHHHHHHHHHHhC-CceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 1567899998877 99998864321 13689999985 899999999999764
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-31 Score=265.03 Aligned_cols=297 Identities=13% Similarity=0.151 Sum_probs=217.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCC
Q 012095 135 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENF 214 (471)
Q Consensus 135 ~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~ 214 (471)
.++++.++++ +|. +.+++++|+++++..++.+++++||.|+++.+.|.+....++..|++++.++.+.+.+|
T Consensus 54 ~~~~e~lA~~----~g~----~~~~i~~g~~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~~~~~ 125 (370)
T TIGR02539 54 HDFLEDLAEF----LGM----DEARVTHGAREGKFAVMHALCKEGDWVVLDGLAHYTSYVAAERAGLNVKEVPHTGHPEY 125 (370)
T ss_pred HHHHHHHHHH----hCC----CceEEECChHHHHHHHHHHhhCCCCEEEECCcccHHHHHHHHHcCCEEEEEecCCcccC
Confidence 4455555555 443 46777999999999999999999999999988866666788999999999998765678
Q ss_pred cCCHHHHHhhhcc-------CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccC
Q 012095 215 LLDPKVLESKLTE-------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL 287 (471)
Q Consensus 215 ~ld~e~l~~~l~~-------~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~ 287 (471)
.+|+++|++++++ ++++|++++|+||||...+ +++|+++|+++ ++++|+||+|...... .....
T Consensus 126 ~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~---l~~i~~la~~~-~~~livDea~~~g~~~----~~~~~- 196 (370)
T TIGR02539 126 KVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD---AGKVAKVCREK-GVPLLLNCAYTVGRMP----VSAKE- 196 (370)
T ss_pred CcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC---HHHHHHHHHHc-CCeEEEECccccCCcC----CCHHH-
Confidence 8999999999853 6789999999999999999 88899999999 9999999999863211 11111
Q ss_pred CCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccC--------CCChHHHHHHHHHHhccCCChHHHHH
Q 012095 288 PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS--------GASSISQKAGVAALGLGYAGGEVVSK 359 (471)
Q Consensus 288 ~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~--------~~~~~~q~aa~~~L~~~~~~~~~~~~ 359 (471)
.+..++++||||+++ +|.|+||+++++++++.+.....++.. ......+.++.+++.. ..++++.
T Consensus 197 ---~~~di~v~s~sK~~~-~~g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~l~~ 269 (370)
T TIGR02539 197 ---IGADFIVGSGHKSMA-ASGPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPH---VVERVKR 269 (370)
T ss_pred ---cCCCEEEeeCccccc-CCCCEEEEEECHHHHhhhcccccCCccceeeeecccccccHHHHHHHHHHH---HHHHHHH
Confidence 234577899999998 577899999999999998876654332 1222245555556653 2455555
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCeee--CCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEE-EECCCCCCC
Q 012095 360 MVKAFRERRDFLVKSFGELEGVKMS--EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA-LVPGDAFGD 436 (471)
Q Consensus 360 ~~~~~~~~r~~l~~~L~~~~g~~~~--~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~-v~pg~~f~~ 436 (471)
..+.++.. +++.+.|.++ |+++. .|..+.|+++++|.. .....+ ...+...+.+.|.++ ||. +.+ +.
T Consensus 270 ~~~~~~~~-~~l~~~L~~~-g~~~~~~~~s~t~~v~~~~~~~-~~~~~~--~~~~~~~~~~~L~e~-GI~~ir~----~~ 339 (370)
T TIGR02539 270 WDEEVKKT-RWFVAELEDI-GFIQLGQKPKEHDLVKFETPGF-HEIAQK--HKRRGYFLYEELKKR-GIHGIRS----GQ 339 (370)
T ss_pred HHHHHHHH-HHHHHHHHhC-CcEEEccCCCcCceEEEECCch-hHHhhh--hccccHHHHHHHHhC-CCccccC----Cc
Confidence 55555554 5899999998 88753 355677788887631 000000 001345688888766 996 554 33
Q ss_pred CCcEEEEeec-CHHHHHHHHHHHHHHHHhh
Q 012095 437 DTCIRISYAA-SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 437 ~~~iRis~~~-~~e~i~~~~~~l~~~l~~~ 465 (471)
++++|+++.. +.++++++++.|+++++++
T Consensus 340 ~~~iRis~~~~t~e~i~~l~~~L~~~~~~~ 369 (370)
T TIGR02539 340 TKYFKLSVYGLTKEQVEYVVDSFEEIVEEY 369 (370)
T ss_pred ceEEEEEecCCCHHHHHHHHHHHHHHHHhc
Confidence 5799999633 8999999999999988763
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-31 Score=264.80 Aligned_cols=332 Identities=15% Similarity=0.174 Sum_probs=239.1
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+++|||..|. ..++. ++.+.+++.+++.+.... ...+..+.++.+++.+.+.+|. +++++++|+++++.
T Consensus 25 ~g~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~la~~~g~----~~~~~~~sg~~a~~ 98 (379)
T TIGR00707 25 NGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHV--SNLYYTEPQEELAEKLVEHSGA----DRVFFCNSGAEANE 98 (379)
T ss_pred CCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhcccc--ccccCCHHHHHHHHHHHhhCCC----CEEEEeCCcHHHHH
Confidence 577899999974 34444 589999999888753211 1112245666777777766663 49999999999999
Q ss_pred HHHHHhc---C----CCCeEEEcCCCCCChHHHHHHcCCEEEE----ecCCCCCCCcC--CHHHHHhhhccCCcEEEEcC
Q 012095 170 QAVLAVC---S----PGDEVIIPAPFWVSYPEMARIADATPVI----LPTRISENFLL--DPKVLESKLTEKSRLLILCS 236 (471)
Q Consensus 170 ~~~~~l~---~----~gd~Vlv~~p~y~~~~~~~~~~G~~~~~----v~~~~~~~~~l--d~e~l~~~l~~~~~~i~i~~ 236 (471)
.+++++. . +||+|++++|+|+.+...+...++.... .++..+..+.. |++.+++.+++++++|+++.
T Consensus 99 ~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~p 178 (379)
T TIGR00707 99 AALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDDETAAVIVEP 178 (379)
T ss_pred HHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhhhCeeEEEEEc
Confidence 8888652 2 3799999999999988777766654322 23322222211 89999999988899999976
Q ss_pred CCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeE
Q 012095 237 PSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 315 (471)
Q Consensus 237 p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~ 315 (471)
++||+|. .++.+++++|.++|++| ++++|+||+|.++.+.+.. .++... +...++ .+|||.++ +|+|+||++
T Consensus 179 ~~~~~g~~~~~~~~l~~i~~l~~~~-~~~~i~De~~~~~~~~g~~-~~~~~~-~~~~d~---~t~sK~~~-~G~riG~~~ 251 (379)
T TIGR00707 179 IQGEGGVNPASAEFLKALREICKDK-DALLIFDEVQTGIGRTGKF-FAYEHY-GIEPDI---ITLAKGLG-GGVPIGATL 251 (379)
T ss_pred cccCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCccchh-hhHHhc-CCCCCE---EEEccccc-CCcccEEEE
Confidence 6778886 47999999999999999 9999999999987554421 111111 112222 36899999 999999999
Q ss_pred cCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCC---CCCeeeCCCcceEE
Q 012095 316 GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL---EGVKMSEPQGAFYL 392 (471)
Q Consensus 316 ~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~---~g~~~~~p~~g~~~ 392 (471)
+++++++.+........++.++++|.++.++|+.. + ..+..++++++++.+.+.|.++ .++... +..|.++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~---~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~g~~~ 325 (379)
T TIGR00707 252 AKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVI---E--KERLLENVKEKGDYFKERLEELGKNYPNKEV-RGKGLML 325 (379)
T ss_pred EcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHH---H--hhhHHHHHHHHHHHHHHHHHHHHhhCCCCcc-ccCceEE
Confidence 99999998876544556678999999999998741 1 1245566777777777776653 122222 2356678
Q ss_pred eEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHH
Q 012095 393 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKG 461 (471)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~ 461 (471)
|+.++. +..++++.|.++ ||.+.|+. .+++|++++. +++++++++++|+++
T Consensus 326 ~~~~~~-------------~~~~~~~~l~~~-Gv~v~~~~----~~~lRi~~~~~~t~~~i~~~~~~l~~~ 378 (379)
T TIGR00707 326 GIELEA-------------PCKDIVKKALEK-GLLVNCAG----PKVLRFLPPLIITKEEIDEAVSALEEA 378 (379)
T ss_pred EEEecC-------------cHHHHHHHHHHC-CcEEeeCC----CCEEEEECCCcCCHHHHHHHHHHHHHh
Confidence 888763 457888887765 99999853 4789999754 899999999999875
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-30 Score=263.78 Aligned_cols=338 Identities=17% Similarity=0.159 Sum_probs=242.9
Q ss_pred CCCeEEcCCCC-CCCCChHHHHHHHHHHHHcCCCCCC---CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 94 GVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFTRYT---PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 94 g~~~i~l~~g~-~~~~~p~~v~~a~~~~~~~~~~~Y~---~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
|+++++|+.++ ..+..+|.+++++.+++.+...+.+ ...|..+....+++.+.+.+| .++.++ ++++++++.
T Consensus 44 ~~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g---~~~~l~-~~sG~~an~ 119 (402)
T TIGR01821 44 AKDVTVWCSNDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHG---KESALV-FTSGYVAND 119 (402)
T ss_pred CeeEEEeEccCcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhC---CCeEEE-ECchHHHHH
Confidence 46789999887 8888899999999999876222111 112434445555555555555 234444 454577777
Q ss_pred HHHHHhcC--CCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc----cCCcEEEEcCCCCCccc
Q 012095 170 QAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT----EKSRLLILCSPSNPTGS 243 (471)
Q Consensus 170 ~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~----~~~~~i~i~~p~NPtG~ 243 (471)
.++..+.. +|+.|+.....|......++..|++++.++. .|++++++.++ +++++|++++|+||||.
T Consensus 120 ~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~ 192 (402)
T TIGR01821 120 ATLATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIFRH-------NDVAHLEKLLQSVDPNRPKIIAFESVYSMDGD 192 (402)
T ss_pred HHHHHhhCCCCCCEEEEcchHhHHHHHHHHHcCCeEEEECC-------CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCC
Confidence 78887765 6777777766777777777888888766653 26677777664 25788999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHH
Q 012095 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 323 (471)
Q Consensus 244 ~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~ 323 (471)
+.+ +++|.++|++| ++++|+||+|....+++.............+..++++||||.+|++| ||+++++++++.
T Consensus 193 ~~~---l~~i~~l~~~~-~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G---G~i~~~~~~~~~ 265 (402)
T TIGR01821 193 IAP---IEEICDLADKY-GALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVVG---GYIAASRKLIDA 265 (402)
T ss_pred ccC---HHHHHHHHHHc-CCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccCC---ceeecCHHHHHH
Confidence 999 89999999999 99999999998555543222111111111234688999999999888 999999999999
Q ss_pred HHHHHhc--ccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccC
Q 012095 324 CNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG 401 (471)
Q Consensus 324 l~~~~~~--~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~ 401 (471)
+...... ++.+.++..+.++.++|+.. ++. ...++.++++++++.+.|+++ |+++.++.+++ +++.++..
T Consensus 266 l~~~~~~~~~t~~~~~~~~aaa~aaL~~~---~~~-~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~i-~~i~~~~~-- 337 (402)
T TIGR01821 266 IRSYAPGFIFTTSLPPAIAAGATASIRHL---KES-QDLRRAHQENVKRLKNLLEAL-GIPVIPNPSHI-VPVIIGDA-- 337 (402)
T ss_pred HHHhCcCceecCcCCHHHHHHHHHHHHHh---hcC-HHHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCE-EEEEeCCH--
Confidence 8765443 24457777888888888752 222 455666778899999999887 88877777665 45555421
Q ss_pred CcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012095 402 SEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAA--SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 402 ~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~---~~~iRis~~~--~~e~i~~~~~~l~~~l~~~~ 466 (471)
....++.+.|++++||.+.+...+.. .+++|+++.. ++++++++++.|+++++++.
T Consensus 338 ---------~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~~~~ 398 (402)
T TIGR01821 338 ---------ALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLVWDRLG 398 (402)
T ss_pred ---------HHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 13567888888777999988654432 2689999975 89999999999999988764
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-30 Score=261.87 Aligned_cols=335 Identities=19% Similarity=0.242 Sum_probs=246.6
Q ss_pred cCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCC--CCC-------CCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCC
Q 012095 93 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR--YTP-------NAGTLELRSAICHKLKEENGLSYTPDQILVSNG 163 (471)
Q Consensus 93 ~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~--Y~~-------~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G 163 (471)
.|++++.|..|... ++|+.+.+++.+.+.+...+ .+. ..+..++|+.+++++ |.+ .+++|++|+|
T Consensus 15 ~~~~~~yld~~~~~-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~----~~~-~~~~v~~~~g 88 (403)
T TIGR01979 15 NGKPLVYLDSAATS-QKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFI----NAA-SDEEIVFTRG 88 (403)
T ss_pred CCCceEEEeCcccc-CCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHh----CcC-CCCeEEEeCC
Confidence 36678999999977 35677888888776542111 000 013446777777765 432 2579999999
Q ss_pred hHHHHHHHHHHh----cCCCCeEEEcCCCCCCh----HHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEc
Q 012095 164 AKQSILQAVLAV----CSPGDEVIIPAPFWVSY----PEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILC 235 (471)
Q Consensus 164 ~~~al~~~~~~l----~~~gd~Vlv~~p~y~~~----~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~ 235 (471)
+++++..++.++ +++||+|+++++.|++. ...++..|++++.++++ .++.+|++.+++++++++++|+++
T Consensus 89 ~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~i~~~~~lv~~~ 166 (403)
T TIGR01979 89 TTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLD--DDGTLDLDDLEKLLTEKTKLVAIT 166 (403)
T ss_pred HHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecC--CCCCCCHHHHHHHhccCCeEEEEE
Confidence 999999888875 57899999999988764 34566789999999987 345689999999999999999999
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeE
Q 012095 236 SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 315 (471)
Q Consensus 236 ~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~ 315 (471)
+|+||||..++ +++|.++|++| |+++|+|++|... .....+.. .+..+++.|++|.+|.+| +||++
T Consensus 167 ~~~~~tG~~~~---~~~i~~~~~~~-~~~~ivD~a~~~g----~~~~~~~~----~~~d~~~~s~~K~~gp~G--~g~l~ 232 (403)
T TIGR01979 167 HVSNVLGTVNP---VEEIAKLAHQV-GAKVLVDGAQAVP----HMPVDVQA----LDCDFYVFSGHKMYGPTG--IGVLY 232 (403)
T ss_pred cccccccccCC---HHHHHHHHHHc-CCEEEEEchhhcC----ccccCccc----cCCCEEEEecccccCCCC--ceEEE
Confidence 99999999999 88999999999 9999999999752 11112211 345689999999988666 99999
Q ss_pred cCHHHHHHHHHHH---------------------hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHH
Q 012095 316 GPKHFVAACNKIQ---------------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 374 (471)
Q Consensus 316 ~~~~~i~~l~~~~---------------------~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~ 374 (471)
+++++++.+.... +....+++.....++.++++.. .+...+...++..+.++++.+.
T Consensus 233 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~--~~~g~~~~~~~~~~l~~~l~~~ 310 (403)
T TIGR01979 233 GKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYL--EAIGLENIEAHEHELTAYALER 310 (403)
T ss_pred EchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHH
Confidence 9988877653110 0011234555566666666531 0122567788888999999999
Q ss_pred hcCCCCCeeeCCC-----cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC--------CCCCCCcEE
Q 012095 375 FGELEGVKMSEPQ-----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD--------AFGDDTCIR 441 (471)
Q Consensus 375 L~~~~g~~~~~p~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~--------~f~~~~~iR 441 (471)
|++++|+++..|. +++ +.+.+++. +..++.+.|. +.||.+.+|. .++.++++|
T Consensus 311 l~~~~g~~~~~~~~~~~~~~~-v~~~~~~~------------~~~~~~~~L~-~~gI~v~~g~~~~~~~~~~~~~~~~iR 376 (403)
T TIGR01979 311 LGEIPGLRIYGPRDAEDRGGI-ISFNVEGV------------HPHDVGTILD-EEGIAVRSGHHCAQPLMRRFGVPATCR 376 (403)
T ss_pred HhcCCCEEEeCCCCccccCce-EEEEeCCc------------CHHHHHHHHh-hCCEEEcchhhhhHHHHHHhCCCCEEE
Confidence 9988889887654 455 44566542 5667777655 5699999876 344568999
Q ss_pred EEeec--CHHHHHHHHHHHHHHHHhh
Q 012095 442 ISYAA--SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 442 is~~~--~~e~i~~~~~~l~~~l~~~ 465 (471)
+|++. +++|++++++.|+++++.+
T Consensus 377 iS~~~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 377 ASFYIYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred EEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 99996 8899999999999987765
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-30 Score=262.58 Aligned_cols=338 Identities=19% Similarity=0.202 Sum_probs=242.2
Q ss_pred CCCeEEcCCCC-CCCCChHHHHHHHHHHHHcCCCCCC---CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 94 GVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFTRYT---PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 94 g~~~i~l~~g~-~~~~~p~~v~~a~~~~~~~~~~~Y~---~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
|+++++|++++ ..+++++.+++++.+++.+...+++ ...|..+..+.+++.+.+.+| .++.+++++|+ ++..
T Consensus 45 ~~~~~~~~s~dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g---~~~~~~~~sG~-~an~ 120 (407)
T PRK09064 45 EREVTVWCSNDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHG---KEAALVFTSGY-VSND 120 (407)
T ss_pred CceEEEEECCCCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhC---CCcEEEECcHH-HHHH
Confidence 46799999887 7888889999999998865222111 112334445555555555555 34566666665 4555
Q ss_pred HHHHHhcC--CCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc----cCCcEEEEcCCCCCccc
Q 012095 170 QAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT----EKSRLLILCSPSNPTGS 243 (471)
Q Consensus 170 ~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~----~~~~~i~i~~p~NPtG~ 243 (471)
.++..++. +++.|+.....|.+....++..|+++..++. .|++.+++.++ +++++|++++|+||+|.
T Consensus 121 ~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~ 193 (407)
T PRK09064 121 ATLSTLAKLIPDCVIFSDELNHASMIEGIRRSRCEKHIFRH-------NDVAHLEELLAAADPDRPKLIAFESVYSMDGD 193 (407)
T ss_pred HHHHHHhCCCCCCEEEEeCcchHHHHHHHHHcCCcEEEECC-------CCHHHHHHHHHhccCCCCeEEEEeCCCCCCcc
Confidence 56666554 7777777777777776777888888766653 27777777764 46789999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCC-CCCceEEEecCCcccCccchhheeeEcCHHHHH
Q 012095 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG-MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA 322 (471)
Q Consensus 244 ~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~ 322 (471)
+.+ +++|.++|++| +++||+||+|....+++.+. .+....+ ..+..++++||||.||++| ||+++++++++
T Consensus 194 ~~~---l~~i~~l~~~~-~~~livDEa~~~G~~g~~g~-g~~~~~~~~~~~div~~t~sKa~g~~G---G~~~~~~~~~~ 265 (407)
T PRK09064 194 IAP---IAEICDLADKY-NALTYLDEVHAVGMYGPRGG-GIAERDGLMDRIDIIEGTLAKAFGVMG---GYIAGSAALVD 265 (407)
T ss_pred ccC---HHHHHHHHHHc-CCEEEEECCCcccccCCCCC-ChHHhcCCCCCCeEEEEecchhhhccC---ceEecCHHHHH
Confidence 999 99999999999 99999999998544543221 1212111 1234788999999999888 99999999999
Q ss_pred HHHHHHhcc--cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCcc
Q 012095 323 ACNKIQSQF--TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYY 400 (471)
Q Consensus 323 ~l~~~~~~~--~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~ 400 (471)
.+......+ +.+.++..+.++.++|+.. +. ....+++++++++++.+.|.++ |+++.++.+++ +++.++..
T Consensus 266 ~l~~~~~~~~~t~~~~~~~~~aa~~al~~~---~~-~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~i-v~i~~~~~- 338 (407)
T PRK09064 266 AVRSYAPGFIFTTSLPPAIAAAALASIRHL---KE-SNEERERHQERAAKLKAALDAA-GIPVMPNESHI-VPVMVGDP- 338 (407)
T ss_pred HHHHhCccccccCcCCHHHHHHHHHHHHHH---hc-CHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCCCE-EEEEeCCH-
Confidence 887654433 3456777777777777641 11 2344677889999999999987 88777666554 56666431
Q ss_pred CCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCC---CcEEEEeec--CHHHHHHHHHHHHHHHHhhCC
Q 012095 401 GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD---TCIRISYAA--SLTTLQAAVERIKKGLLTLRP 467 (471)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~---~~iRis~~~--~~e~i~~~~~~l~~~l~~~~~ 467 (471)
....++.++|++++||.+.+...+..+ +++|++++. ++++++++++.|+++++++..
T Consensus 339 ----------~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~~~~~ 400 (407)
T PRK09064 339 ----------EKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWARLGL 400 (407)
T ss_pred ----------HHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 146788998887779999987654432 689999885 889999999999999887643
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-30 Score=261.08 Aligned_cols=336 Identities=15% Similarity=0.185 Sum_probs=240.9
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.++|+..|. ..++. ++.+.+++.+++.+... ++. ....+....+++.+.+.. ..+++++++|+++++.
T Consensus 29 dG~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~-~~~-~~~~~~~~~la~~l~~~~----~~~~v~~~~sGseA~~ 102 (389)
T PRK01278 29 DGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWH-VSN-LYRIPEQERLAERLVENS----FADKVFFTNSGAEAVE 102 (389)
T ss_pred CCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhcCc-ccc-ccCChHHHHHHHHHHhhC----CCCEEEEcCCcHHHHH
Confidence 578899998875 33343 78999999998875221 111 123345556666665443 2369999999999999
Q ss_pred HHHHHh----cCCCC----eEEEcCCCCCChHHHHHHcCCEEEEecCC-C-CCCCc----CCHHHHHhhhccCCcEEEEc
Q 012095 170 QAVLAV----CSPGD----EVIIPAPFWVSYPEMARIADATPVILPTR-I-SENFL----LDPKVLESKLTEKSRLLILC 235 (471)
Q Consensus 170 ~~~~~l----~~~gd----~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~-~-~~~~~----ld~e~l~~~l~~~~~~i~i~ 235 (471)
.+++++ .++|| +|++.+++|+++...+...+......... + ..++. .|++.+++++++++++|+++
T Consensus 103 ~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~avive 182 (389)
T PRK01278 103 CAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITPNTAAILIE 182 (389)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhCCCeEEEEEe
Confidence 998876 45676 89999999999887766655543332110 0 11222 58999999998889999998
Q ss_pred CCCCCcc-cCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCcc-ccccCCCCCCceEEEecCCcccCccchhhee
Q 012095 236 SPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT-SFASLPGMWERTLTVNGFSKAFAMTGWRLGY 313 (471)
Q Consensus 236 ~p~NPtG-~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~ 313 (471)
.++||+| .+++.+++++|.++|++| |+++|+||+|.++.+.+.... ....+.. + +.||||.++ +|+|+||
T Consensus 183 p~~~~~G~~~~~~~~l~~l~~l~~~~-g~~lI~DEv~~g~g~~g~~~~~~~~~~~p--d----i~t~sK~l~-~G~~ig~ 254 (389)
T PRK01278 183 PIQGEGGIRPAPDEFLKGLRQLCDEN-GLLLIFDEVQCGMGRTGKLFAHEWAGVTP--D----IMAVAKGIG-GGFPLGA 254 (389)
T ss_pred cccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCCcceeecccCCCC--C----EEEEehhcc-CCcceEE
Confidence 7889999 789999999999999999 999999999998755443111 1112211 1 458999998 9999999
Q ss_pred eEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCC--ChHHHHHHHHHHHHHHHHHHHHhcCCCC-CeeeCCCcce
Q 012095 314 IAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA--GGEVVSKMVKAFRERRDFLVKSFGELEG-VKMSEPQGAF 390 (471)
Q Consensus 314 v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~g-~~~~~p~~g~ 390 (471)
+++++++++.+.......+++.+++.|.++.++|+.-.. ..+++.++.+.++++.+.+.+ +.++ +....+ .|+
T Consensus 255 ~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l~~l~~---~~~~~~~~v~g-~G~ 330 (389)
T PRK01278 255 CLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEGLVD---RFPDVIEEVRG-KGL 330 (389)
T ss_pred EEEcHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh---hCCCceeeEec-ccE
Confidence 999999998887666667788999999999888864110 123344445555555544432 2332 233334 466
Q ss_pred EEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHHHHHHHh
Q 012095 391 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~ 464 (471)
++++.++. +..+++++|+++ ||.+.|+. .+++||+++ .+++++++++++|.+++++
T Consensus 331 ~~~i~~~~-------------~~~~~~~~l~~~-GV~~~p~~----~~~lR~~p~~~~~~~~i~~~l~~l~~~l~~ 388 (389)
T PRK01278 331 LLGLKCVV-------------PNRDLVQALRDE-GLLTVGAG----DNVVRLLPPLIITEEEIDEALERLERAAES 388 (389)
T ss_pred EEEEEEec-------------CHHHHHHHHHHC-CeEEeecC----CCEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 67777742 567899999987 99999974 578999965 4899999999999999865
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-29 Score=257.84 Aligned_cols=333 Identities=19% Similarity=0.198 Sum_probs=237.5
Q ss_pred cCCCeEEcCCCC-CCCCChHHHHHHHHHHHHcC---C---CCCC-CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCCh
Q 012095 93 AGVSVIRLAAGE-PDFDTPVLIAEAGINAIREG---F---TRYT-PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 164 (471)
Q Consensus 93 ~g~~~i~l~~g~-~~~~~p~~v~~a~~~~~~~~---~---~~Y~-~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~ 164 (471)
.|..+++++.++ .++...|.+++++.+++.+- . ..|. ......+|++.++++ .|. +.+++++|+
T Consensus 52 ~g~~~~~~~~~~YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~----~g~----~~~~~~~sG 123 (407)
T PRK07179 52 PGPDAIILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAF----TGF----ESCLLCQSG 123 (407)
T ss_pred CCCcEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHH----hCC----CcEEEECCH
Confidence 566789998887 77878889999999988641 1 1111 111234455555554 452 467889999
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc-CCcEEEEcCCCCCccc
Q 012095 165 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGS 243 (471)
Q Consensus 165 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~-~~~~i~i~~p~NPtG~ 243 (471)
++++..++++++.+||.|+++.+.|.+....++..|++++.++. .|++++++++++ ++++|++++|+||||.
T Consensus 124 ~~An~~~l~~l~~~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~lV~v~~v~n~tG~ 196 (407)
T PRK07179 124 WAANVGLLQTIADPNTPVYIDFFAHMSLWEGVRAAGAQAHPFRH-------NDVDHLRRQIERHGPGIIVVDSVYSTTGT 196 (407)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCcCHHHHHHHHHCCCeEEEecC-------CCHHHHHHHHHhcCCeEEEECCCCCCCCc
Confidence 99999999999999999999999999888888889998876653 499999999876 5788889999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHH
Q 012095 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 323 (471)
Q Consensus 244 ~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~ 323 (471)
+++ +++|.++|++| ++++|+||+|....++..+...+..++......+++.|+||.+| .|+||+++++++++.
T Consensus 197 i~p---l~~I~~l~~~~-~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g---~~~G~l~~~~~~~~~ 269 (407)
T PRK07179 197 IAP---LADIVDIAEEF-GCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFA---GRAGIITCPRELAEY 269 (407)
T ss_pred ccc---HHHHHHHHHHc-CCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhh---ccCeEEEeCHHHHHH
Confidence 999 88999999999 99999999998654433222222222211123588999999996 379999999999888
Q ss_pred HHHHHhc--ccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccC
Q 012095 324 CNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG 401 (471)
Q Consensus 324 l~~~~~~--~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~ 401 (471)
+...... +..+.++....++.++++. .......+++++++++++.+.|.++ |+++. +.+ .++++.++..
T Consensus 270 ~~~~~~~~~~~~t~~~~~~aa~~aal~~----~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~-~~~-~i~~l~~~~~-- 340 (407)
T PRK07179 270 VPFVSYPAIFSSTLLPHEIAGLEATLEV----IESADDRRARLHANARFLREGLSEL-GYNIR-SES-QIIALETGSE-- 340 (407)
T ss_pred HHHhCcCeeeCCCCCHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHc-CCCCC-CCC-CEEEEEeCCH--
Confidence 7655432 2222233333334455553 2223457788999999999999988 88765 344 4467766532
Q ss_pred CcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC---CCCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012095 402 SEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG---DDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 402 ~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~---~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~~ 466 (471)
.+...+.+.|.++ ||.+..-...+ ..+++||+++. ++++++++++.|++++++..
T Consensus 341 ---------~~~~~~~~~L~~~-GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~~~ 400 (407)
T PRK07179 341 ---------RNTEVLRDALEER-NVFGAVFCAPATPKNRNLIRLSLNADLTASDLDRVLEVCREARDEVD 400 (407)
T ss_pred ---------HHHHHHHHHHHHC-CceEeeecCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhhC
Confidence 0345666776655 98743211111 24689999996 99999999999999987643
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-30 Score=256.71 Aligned_cols=315 Identities=18% Similarity=0.147 Sum_probs=227.1
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEE
Q 012095 105 PDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVII 184 (471)
Q Consensus 105 ~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv 184 (471)
+++++|+.+++++.++... ...|++..+..++++.+++++ | ++++++++|+++++..++.+++++||+|++
T Consensus 6 ~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~~a~~~----g----~~~~~~~~~gt~a~~~~~~~l~~~gd~v~~ 76 (338)
T cd06502 6 TVTGPTPEMLEAMAAANVG-DDVYGEDPTTAKLEARAAELF----G----KEAALFVPSGTAANQLALAAHTQPGGSVIC 76 (338)
T ss_pred cCCCCCHHHHHHHHhcccC-CcccCCCHHHHHHHHHHHHHh----C----CCeEEEecCchHHHHHHHHHhcCCCCeEEE
Confidence 4556788899999876532 346767666667777776665 4 457778888889999999999999999999
Q ss_pred cCCCCCChHH---HHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc-------CCcEEEEcCCCCCcccCCCHHHHHHHH
Q 012095 185 PAPFWVSYPE---MARIADATPVILPTRISENFLLDPKVLESKLTE-------KSRLLILCSPSNPTGSVYPKNLLDEIA 254 (471)
Q Consensus 185 ~~p~y~~~~~---~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~-------~~~~i~i~~p~NPtG~~~~~~~l~~i~ 254 (471)
++|+|..+.. .++..|++++.++.+ . +.+|++++++++++ ++++|++++|+|| |.+++.+++++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~ 152 (338)
T cd06502 77 HETAHIYTDEAGAPEFLSGVKLLPVPGE--N-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAIS 152 (338)
T ss_pred ecCcceeeecCCcHHHHcCceEEeecCC--C-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHHH
Confidence 9999876542 456689999999874 2 56999999999874 6889999999997 6677999999999
Q ss_pred HHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhhee-eEcCHHHHHHHHHHHhcc--
Q 012095 255 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGPKHFVAACNKIQSQF-- 331 (471)
Q Consensus 255 ~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~-v~~~~~~i~~l~~~~~~~-- 331 (471)
++|++| ++++|+||+|..+.....+. .+..... +..+++.|+||.++++| |+ +++++++++.+......+
T Consensus 153 ~~~~~~-~~~livDea~~~~~~~~~~~-~~~~~~~--~~d~~~~s~sK~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~ 225 (338)
T cd06502 153 ALAKEN-GLPLHLDGARLANAAAALGV-ALKTYKS--GVDSVSFCLSKGGGAPV---GAVVVGNRDFIARARRRRKQAGG 225 (338)
T ss_pred HHHHHc-CCeEeechHHHHHHHHhcCC-CHHHHHh--cCCEEEEeccccCCCcc---ceEEECCHHHHHHHHHHHHHhCC
Confidence 999999 99999999986432211111 2222211 22356889999999887 55 567999999988765433
Q ss_pred cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCC
Q 012095 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 411 (471)
Q Consensus 332 ~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~ 411 (471)
....+.+.+.++..+|+. ..+ .+..+++.++++++.+.|+++ |+.+.++.++| +.++++... .
T Consensus 226 ~~~~~~~~~~a~~~~L~~----~~~-~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~-~~v~~~~~~----------~ 288 (338)
T cd06502 226 GMRQSGFLAAAGLAALEN----DLW-LRRLRHDHEMARRLAEALEEL-GGLESEVQTNI-VLLDPVEAN----------A 288 (338)
T ss_pred ChhhHHHHHHHHHHHhcC----chH-HHHHHHHHHHHHHHHHHHHhc-CCCcccccCCe-EEEecCCcc----------H
Confidence 334566777778777764 233 345567778889999999988 66666667676 455554210 0
Q ss_pred CHHHHHHHHHH--cCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHH
Q 012095 412 NSESLCRYLLD--KAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKK 460 (471)
Q Consensus 412 ~~~~l~~~Ll~--~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~ 460 (471)
....+.+.+.+ +.||.+.+.. .+++|++++. +++++++++++|++
T Consensus 289 ~~~~l~~~l~~~~~~gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 289 VFVELSKEAIERRGEGVLFYAWG----EGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred HHHHHHHHHHHhhhCCEEEEecC----CCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 12233343331 3589887753 2789999985 88999999998864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-29 Score=257.16 Aligned_cols=331 Identities=15% Similarity=0.173 Sum_probs=242.1
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCC-C-CC-------CCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChH
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRY-T-PN-------AGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y-~-~~-------~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~ 165 (471)
.++|.|..+.-.. +|+.+.+++.+.+.....+. . .. .-..++|+.+++++ |. .++++|++|+|++
T Consensus 22 ~~~iYld~a~~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~-~~~~~v~~t~g~t 95 (406)
T PRK09295 22 LPLAYLDSAASAQ-KPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFI----NA-RSAEELVFVRGTT 95 (406)
T ss_pred CceEEEeCccccc-CCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHc----Cc-CCCCeEEEeCCHH
Confidence 3578888877553 56778898888775422111 0 11 11335556666654 42 1568999999999
Q ss_pred HHHHHHHHH----hcCCCCeEEEcCCCCCC----hHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCC
Q 012095 166 QSILQAVLA----VCSPGDEVIIPAPFWVS----YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSP 237 (471)
Q Consensus 166 ~al~~~~~~----l~~~gd~Vlv~~p~y~~----~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p 237 (471)
+++..++.+ ++++||+|+++++.|++ +...++..|++++.++++. ++.+|+++++++++++++++++++|
T Consensus 96 ~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~t~lv~l~~~ 173 (406)
T PRK09295 96 EGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNP--DGTLQLETLPALFDERTRLLAITHV 173 (406)
T ss_pred HHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCC--CCCCCHHHHHHhcCCCcEEEEEecc
Confidence 999988876 46899999999988865 3455677899999999864 4568999999999989999999999
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcC
Q 012095 238 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 317 (471)
Q Consensus 238 ~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~ 317 (471)
+||||.+++ +++|.++|+++ ++++++|++|.... ....+.. .+..+++.|++|.+|.+| +||++++
T Consensus 174 ~n~tG~~~~---~~~i~~~~~~~-~~~vivD~a~~~g~----~~~~~~~----~~~D~~~~s~~K~~gp~G--~G~l~~~ 239 (406)
T PRK09295 174 SNVLGTENP---LAEMIALAHQH-GAKVLVDGAQAVMH----HPVDVQA----LDCDFYVFSGHKLYGPTG--IGILYVK 239 (406)
T ss_pred hhcccccCC---HHHHHHHHHHc-CCEEEEEcccccCc----cccCchh----cCCCEEEeehhhccCCCC--cEEEEEc
Confidence 999999999 88899999999 99999999997532 1122211 344588999999888666 8999999
Q ss_pred HHHHHHHHHHH----------------------hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHh
Q 012095 318 KHFVAACNKIQ----------------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF 375 (471)
Q Consensus 318 ~~~i~~l~~~~----------------------~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L 375 (471)
+++++.+.... +....+++.....++.++++.. .+..++...++.++.++++.+.|
T Consensus 240 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~--~~~g~~~i~~~~~~l~~~l~~~l 317 (406)
T PRK09295 240 EALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYV--SALGLNNIAEYEQNLMHYALSQL 317 (406)
T ss_pred hHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHH
Confidence 98877653110 1112246666777777777641 11235677788888999999999
Q ss_pred cCCCCCeeeCCC--cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC--------CCCCcEEEEee
Q 012095 376 GELEGVKMSEPQ--GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF--------GDDTCIRISYA 445 (471)
Q Consensus 376 ~~~~g~~~~~p~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f--------~~~~~iRis~~ 445 (471)
.+++|+++..|. .++ +.+.++.. +..++.+.| +++||.+..|..+ +.++++|+|++
T Consensus 318 ~~~~~~~~~~~~~~~~i-v~~~~~~~------------~~~~~~~~L-~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~ 383 (406)
T PRK09295 318 ESVPDLTLYGPQNRLGV-IAFNLGKH------------HAYDVGSFL-DNYGIAVRTGHHCAMPLMAYYNVPAMCRASLA 383 (406)
T ss_pred hcCCCEEEeCCCCCceE-EEEEECCc------------CHHHHHHHH-HhCCeEEeccccchHHHHHHHCCCCEEEEEcc
Confidence 998888887653 455 44456542 567777765 5669999998744 33568999999
Q ss_pred c--CHHHHHHHHHHHHHHHH
Q 012095 446 A--SLTTLQAAVERIKKGLL 463 (471)
Q Consensus 446 ~--~~e~i~~~~~~l~~~l~ 463 (471)
. +++|++.+++.|+++..
T Consensus 384 ~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 384 MYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 6 88999999999988643
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.8e-29 Score=256.61 Aligned_cols=337 Identities=19% Similarity=0.226 Sum_probs=245.5
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCC------CCC---CCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCCh
Q 012095 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR------YTP---NAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 164 (471)
Q Consensus 94 g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~------Y~~---~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~ 164 (471)
|.+.+.|..+... ++|+.+.+++.+.+.+...+ |.. .....++|+.+++++ |.+ ++++|++|+|+
T Consensus 30 ~~~~iyLd~a~~~-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~-~~~~v~~t~g~ 103 (424)
T PLN02855 30 GSKLVYLDNAATS-QKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFI----NAS-TSREIVFTRNA 103 (424)
T ss_pred CCCeEEeeCcccc-CCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHc----CCC-CCCEEEEeCCH
Confidence 4568999998876 46788889988876542111 100 011346666777665 431 35799999999
Q ss_pred HHHHHHHHHHh----cCCCCeEEEcCCCCCC----hHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcC
Q 012095 165 KQSILQAVLAV----CSPGDEVIIPAPFWVS----YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCS 236 (471)
Q Consensus 165 ~~al~~~~~~l----~~~gd~Vlv~~p~y~~----~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~ 236 (471)
++++..+++.+ +++||+|+++++.|++ +...++..|++++.++++.++ .+|++.+++.+++++++|++++
T Consensus 104 t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~--~~~~~~l~~~i~~~t~lv~i~~ 181 (424)
T PLN02855 104 TEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDE--VLDVEQLKELLSEKTKLVATHH 181 (424)
T ss_pred HHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCC--CcCHHHHHHHhccCceEEEEeC
Confidence 99999988763 6899999999998875 345567789999999986543 4899999999998999999999
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEc
Q 012095 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 316 (471)
Q Consensus 237 p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~ 316 (471)
|+||||..++ +++|+++|+++ +++|++|++|.. +.... .+.. .+..+++.|++|.+|.+| +||+++
T Consensus 182 ~~n~tG~~~~---~~~I~~l~~~~-g~~vivD~a~~~----g~~~~---~~~~-~~~d~~~~s~~K~~gp~G--~G~l~~ 247 (424)
T PLN02855 182 VSNVLGSILP---VEDIVHWAHAV-GAKVLVDACQSV----PHMPV---DVQT-LGADFLVASSHKMCGPTG--IGFLWG 247 (424)
T ss_pred ccccccccCC---HHHHHHHHHHc-CCEEEEEhhhhc----CCcCC---Cchh-cCCCEEEeecccccCCCc--cEEEEE
Confidence 9999999999 78899999999 999999999963 22111 2221 234588999999887555 899999
Q ss_pred CHHHHHHHHHHH--------------------hcccC-CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHh
Q 012095 317 PKHFVAACNKIQ--------------------SQFTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF 375 (471)
Q Consensus 317 ~~~~i~~l~~~~--------------------~~~~~-~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L 375 (471)
++++++.+.... ..+.. +++.....++.++++.. .+..++++.++.++.++++.+.|
T Consensus 248 ~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~--~~~g~~~i~~~~~~l~~~l~~~L 325 (424)
T PLN02855 248 KSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYL--SEIGMDRIHEYEVELGTYLYEKL 325 (424)
T ss_pred chhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHH
Confidence 998887653220 00112 23444444455555431 12356778888889999999999
Q ss_pred cCCCCCeeeCCCc------ceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC--------CCCCcEE
Q 012095 376 GELEGVKMSEPQG------AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF--------GDDTCIR 441 (471)
Q Consensus 376 ~~~~g~~~~~p~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f--------~~~~~iR 441 (471)
.+++|+++..+.. +.++.+.++.. +..++.+.|.+++||.+..|..+ +.++++|
T Consensus 326 ~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~------------~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iR 393 (424)
T PLN02855 326 SSVPGVRIYGPKPSEGVGRAALCAFNVEGI------------HPTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASAR 393 (424)
T ss_pred hcCCCEEEeCCCcccccCcccEEEEEECCc------------CHHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEE
Confidence 9888988875421 23455667642 56788888776669999988743 3357899
Q ss_pred EEeec--CHHHHHHHHHHHHHHHHhhC
Q 012095 442 ISYAA--SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 442 is~~~--~~e~i~~~~~~l~~~l~~~~ 466 (471)
+|++. +++|++++++.|+++++.++
T Consensus 394 iS~~~ynt~~di~~l~~~l~~~~~~~~ 420 (424)
T PLN02855 394 ASLYFYNTKEEVDAFIHALKDTIAFFS 420 (424)
T ss_pred EEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 99986 88999999999999987654
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-29 Score=252.48 Aligned_cols=321 Identities=17% Similarity=0.192 Sum_probs=236.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCC
Q 012095 108 DTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187 (471)
Q Consensus 108 ~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p 187 (471)
+.|+.+.+++.+.+.. ..| + +..++.+.+.+.+++.+|.+ .++.+++++|+++++..++.+++.+||+|+++++
T Consensus 9 ~~~~~v~~a~~~~~~~--~~~-~--~~~~~~~~~~~~la~~~g~~-~~~~~~~~~~~t~al~~~~~~~~~~g~~vl~~~~ 82 (356)
T cd06451 9 NVPPRVLKAMNRPMLG--HRS-P--EFLALMDEILEGLRYVFQTE-NGLTFLLSGSGTGAMEAALSNLLEPGDKVLVGVN 82 (356)
T ss_pred CCCHHHHHHhCCCccC--CCC-H--HHHHHHHHHHHHHHHHhcCC-CCCEEEEecCcHHHHHHHHHHhCCCCCEEEEecC
Confidence 3467788877654311 222 2 34555666667777667742 3346788888899999999999999999999988
Q ss_pred CCCC--hHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc-CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeE
Q 012095 188 FWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLL 264 (471)
Q Consensus 188 ~y~~--~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~-~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ 264 (471)
+|.+ +...++..|++++.++.++ ++.+|++++++.+++ ++++|++++|+||||.+++ +++|.++|+++ +++
T Consensus 83 ~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~---~~~i~~~a~~~-~~~ 156 (356)
T cd06451 83 GVFGDRWADMAERYGADVDVVEKPW--GEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNP---LEGIGALAKKH-DAL 156 (356)
T ss_pred CchhHHHHHHHHHhCCCeEEeecCC--CCCCCHHHHHHHHhccCCCEEEEeccCCCcccccC---HHHHHHHHHhc-CCE
Confidence 7765 4577888999999999864 356899999999987 8999999999999999999 88899999999 999
Q ss_pred EEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHH---HHh------------
Q 012095 265 VLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK---IQS------------ 329 (471)
Q Consensus 265 ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~---~~~------------ 329 (471)
|++|++|.. +.....+.. .+..+++.|.+|+++.+ .++||++.++++++.+.. ...
T Consensus 157 li~D~~~~~----g~~~~~~~~----~~~d~~~~s~~K~l~~p-~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (356)
T cd06451 157 LIVDAVSSL----GGEPFRMDE----WGVDVAYTGSQKALGAP-PGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYW 227 (356)
T ss_pred EEEeeehhc----cCccccccc----cCccEEEecCchhccCC-CCcceeEECHHHHHHHHhcCCCCceeecHHHHHhhh
Confidence 999998863 211112211 23346778899999843 468999999998887753 000
Q ss_pred ----cccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC---cceEEeEecCCccCC
Q 012095 330 ----QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ---GAFYLFIDFSTYYGS 402 (471)
Q Consensus 330 ----~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~---~g~~~~~~~~~~~~~ 402 (471)
....+++...+.++.++++.. ....++...++++++++++.+.|.++ |+++..+. +++++|+.++..
T Consensus 228 ~~~~~~~~t~~~~~~~a~~aal~~l--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~--- 301 (356)
T cd06451 228 GEGYSYPHTPPVNLLYALREALDLI--LEEGLENRWARHRRLAKALREGLEAL-GLKLLAKPELRSPTVTAVLVPEG--- 301 (356)
T ss_pred cccCCCCCCChHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCCceEEEECCCC---
Confidence 122234454556666666531 13446777888899999999999987 87765332 345567777643
Q ss_pred cccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 012095 403 EAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLL 463 (471)
Q Consensus 403 ~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~ 463 (471)
.+..++++.|.+++||.+.+|..+..+++||+|++. ++++++++++.|+++++
T Consensus 302 --------~~~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~~~~ 356 (356)
T cd06451 302 --------VDGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEEALK 356 (356)
T ss_pred --------CCHHHHHHHHHHhCCEEEecccccccCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 267889998887669999998866556799999985 88999999999998763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=256.34 Aligned_cols=338 Identities=17% Similarity=0.136 Sum_probs=244.3
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHc-------CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHH
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIRE-------GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~~-------~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~a 167 (471)
++.++|..|++.+ ++.+++++...+.. +...|+...+..++++.+.+++++.+|.+ ..+|++++ ++++
T Consensus 19 ~~~~~~~~~~~~~--~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~--~~~v~~~s-gt~a 93 (402)
T cd00378 19 RETLELIASENFT--SPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAE--YANVQPHS-GSQA 93 (402)
T ss_pred HhCeeeeccCCcC--CHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCC--ceeeecCC-cHHH
Confidence 3478888887664 67888888765421 12345566677888888888888888853 34566555 5689
Q ss_pred HHHHHHHhcCCCCeEEEcCCCCCChHHH-----HHHcCCEEEEecCCCC-CCCcCCHHHHHhhhc-cCCcEEEEcCCCCC
Q 012095 168 ILQAVLAVCSPGDEVIIPAPFWVSYPEM-----ARIADATPVILPTRIS-ENFLLDPKVLESKLT-EKSRLLILCSPSNP 240 (471)
Q Consensus 168 l~~~~~~l~~~gd~Vlv~~p~y~~~~~~-----~~~~G~~~~~v~~~~~-~~~~ld~e~l~~~l~-~~~~~i~i~~p~NP 240 (471)
+..++.++++|||+|++++|+|.++... ++..|.+++.++++.+ +++.+|++++++++. ++++++++++|+||
T Consensus 94 ~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~~~ 173 (402)
T cd00378 94 NLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGASAYP 173 (402)
T ss_pred HHHHHHHhcCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhCCCCEEEecCcccC
Confidence 9999999999999999999999876543 6678888878877654 267899999999985 58999999999886
Q ss_pred cccCCCHHHHHHHHHHHHhCCCeEEEEccCC-CccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCH-
Q 012095 241 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIY-EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK- 318 (471)
Q Consensus 241 tG~~~~~~~l~~i~~l~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~- 318 (471)
+ ..+ +++|+++|++| +++||+|++| .++.+.+.....+ .. ..++++|+||++ +|+|.||+++++
T Consensus 174 ~--~~~---~~~I~~l~~~~-~~~li~D~a~~~g~~~~g~~~~~~---~~---~dv~~~s~sK~l--~G~~gg~i~~~~~ 239 (402)
T cd00378 174 R--PID---FKRFREIADEV-GAYLLVDMAHVAGLVAGGVFPNPL---PG---ADVVTTTTHKTL--RGPRGGLILTRKG 239 (402)
T ss_pred C--CcC---HHHHHHHHHhc-CCEEEEEccchhhhhhcccCCCcc---cC---CcEEEeccccCC--CCCCceEEEeccH
Confidence 4 445 88999999999 9999999996 4444443212111 11 127899999987 789999999987
Q ss_pred HHHHHHHHHHhcccCCCChH-HHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeee-CCCcceEEeEec
Q 012095 319 HFVAACNKIQSQFTSGASSI-SQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDF 396 (471)
Q Consensus 319 ~~i~~l~~~~~~~~~~~~~~-~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~-~p~~g~~~~~~~ 396 (471)
++++.+.+.......+.+.+ .+.++..++... ...+..+.+++++++++++.+.|.++ |+.+. .|.+++++|+++
T Consensus 240 ~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~v~v~~ 316 (402)
T cd00378 240 ELAKKINSAVFPGLQGGPHLHVIAAKAVALKEA--LEPEFKAYAKQVVENAKALAEALKER-GFKVVSGGTDNHLVLVDL 316 (402)
T ss_pred HHHHHHHHHhCccccCCchHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHhC-CCeEeecCCCCeEEEEeC
Confidence 89998877655444333333 333333344321 12256777888999999999999988 88775 467899999999
Q ss_pred CCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC----CCC--CCCcEEEEeec------CHHHHHHHHHHHHHHHHh
Q 012095 397 STYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD----AFG--DDTCIRISYAA------SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~----~f~--~~~~iRis~~~------~~e~i~~~~~~l~~~l~~ 464 (471)
++.. .+...+.+ +++++||.+.++. .++ .+.++|+++.. ++++++++++.|++++++
T Consensus 317 ~~~~----------~~~~~~~~-~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~~ 385 (402)
T cd00378 317 RPKG----------ITGKAAED-ALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKD 385 (402)
T ss_pred CccC----------CCHHHHHH-HHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence 7421 13455555 4566799997643 221 24689999865 489999999999998865
Q ss_pred h
Q 012095 465 L 465 (471)
Q Consensus 465 ~ 465 (471)
-
T Consensus 386 ~ 386 (402)
T cd00378 386 A 386 (402)
T ss_pred c
Confidence 3
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-30 Score=258.07 Aligned_cols=331 Identities=15% Similarity=0.093 Sum_probs=240.5
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCC---CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGF---TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~---~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~ 166 (471)
.|+++||+..|. +.++. ++.+.+++.+++.+.. ..|... ....+++++.+.+|.+ .++++++++|+++
T Consensus 41 dg~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~-----~~~~la~~l~~~~~~~-~~~~v~~~~sgse 114 (398)
T PRK03244 41 DGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVSNLFATE-----PQIALAERLVELLGAP-EGGRVFFCNSGAE 114 (398)
T ss_pred CCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccCccCccCCH-----HHHHHHHHHHHhCCCC-CCCEEEEeCchHH
Confidence 678899999885 45555 6899999999887521 235322 2245666666555632 3579999999999
Q ss_pred HHHHHHHHhcCCC-CeEEEcCCCCCChHHHHHHc-CCE------------EEEecCCCCCCCcCCHHHHHhhhccCCcEE
Q 012095 167 SILQAVLAVCSPG-DEVIIPAPFWVSYPEMARIA-DAT------------PVILPTRISENFLLDPKVLESKLTEKSRLL 232 (471)
Q Consensus 167 al~~~~~~l~~~g-d~Vlv~~p~y~~~~~~~~~~-G~~------------~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i 232 (471)
++..+++.+..+| +.|+..+++|+++...+... |.. +..+|. .|++.+++.+.+++++|
T Consensus 115 a~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~~~~~~~av 187 (398)
T PRK03244 115 ANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPY-------GDVDALAAAVDDDTAAV 187 (398)
T ss_pred HHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCC-------CCHHHHHHhhcCCeEEE
Confidence 9999999776677 56777788998876544322 221 222221 28899999887788999
Q ss_pred EEcCCCCCcccCCCHHH-HHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhh
Q 012095 233 ILCSPSNPTGSVYPKNL-LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRL 311 (471)
Q Consensus 233 ~i~~p~NPtG~~~~~~~-l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~ 311 (471)
+++.++||||.+++.++ +++|.++|++| |+++|+||+|.++...+.. ..+ ...+.... +.+|||.++ +|+|+
T Consensus 188 iiep~~~~~G~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~g~gr~g~~-~~~-~~~~~~pD---i~t~sK~l~-~G~~i 260 (398)
T PRK03244 188 FLEPIQGEAGVVPPPAGYLAAAREITDRH-GALLVLDEVQTGIGRTGAW-FAH-QHDGVTPD---VVTLAKGLG-GGLPI 260 (398)
T ss_pred EEecccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCcccchH-Hhh-hhhCCCCC---EEEEchhhh-CCccc
Confidence 99999999999887655 99999999999 9999999999876544321 111 11111112 347899998 99999
Q ss_pred eeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCee--eCCCcc
Q 012095 312 GYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM--SEPQGA 389 (471)
Q Consensus 312 G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~--~~p~~g 389 (471)
||+++++++++.+.......+++.+++++.++.++|+.- . -.+..++++++++++.+.|+++ +..+ .....|
T Consensus 261 g~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~---~--~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~v~g~g 334 (398)
T PRK03244 261 GACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTI---A--SEGLLENAERLGEQLRAGIEAL-GHPLVDHVRGRG 334 (398)
T ss_pred EEEEEcHHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHH---H--hccHHHHHHHHHHHHHHHHHhc-CCCceeeEeecc
Confidence 999999999888865445567788999999999998731 1 1234566677778888888875 3321 112357
Q ss_pred eEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012095 390 FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~~ 466 (471)
.++|+.++.. ....+.++|+++ ||.+.+.. .+++|++++. +++++++++++|++++++++
T Consensus 335 ~~~~i~~~~~------------~~~~~~~~l~~~-Gv~~~~~~----~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~~~ 396 (398)
T PRK03244 335 LLLGIVLTAP------------VAKAVEAAAREA-GFLVNAVA----PDVIRLAPPLIITDAQVDAFVAALPAILDAAA 396 (398)
T ss_pred EEEEEEEecc------------HHHHHHHHHHHC-CeEEeecC----CCEEEEECCCcCCHHHHHHHHHHHHHHHHhcc
Confidence 7789988632 466788888876 99998842 4789999775 88999999999999998754
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=257.47 Aligned_cols=330 Identities=21% Similarity=0.277 Sum_probs=239.3
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCC-----CCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeC-ChHHH
Q 012095 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP-----NAGTLELRSAICHKLKEENGLSYTPDQILVSN-GAKQS 167 (471)
Q Consensus 94 g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~-----~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~-G~~~a 167 (471)
+..+++|+.|+|++++|+.+.++..++ ...+.|++ ..|.+++++++++++++.+|. +.+++++++ |++++
T Consensus 19 ~~~~~~l~~g~~~~~~p~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~--~~~~v~~~~~g~~~~ 94 (398)
T cd00613 19 DQSMSFLGSGTYKHNPPAVIKRNILEN--EFYTAYTPYQPEISQGRLQALFELQTMLCELTGM--DVANASLQDEATAAA 94 (398)
T ss_pred ccCcccccccccCCcCcHHHHHHhccc--cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCC--CccceeccCchHHHH
Confidence 345699999999999998888777766 33456766 789999999999999999985 444676666 45555
Q ss_pred HHHHHHHhcCC--CCeEEEcCCCCCChHHHHHHcC----CEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCc
Q 012095 168 ILQAVLAVCSP--GDEVIIPAPFWVSYPEMARIAD----ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT 241 (471)
Q Consensus 168 l~~~~~~l~~~--gd~Vlv~~p~y~~~~~~~~~~G----~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPt 241 (471)
...+..+++.+ ||+|++++|.|+++...+...| ++++.++++. ++.+|++++++++++++++|++++|+ ||
T Consensus 95 ~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~t~~viv~~~~-~~ 171 (398)
T cd00613 95 EAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDE--GGTVDLEALKEEVSEEVAALMVQYPN-TL 171 (398)
T ss_pred HHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCC--CCCcCHHHHHHhcCCCeEEEEEECCC-CC
Confidence 55555566676 9999999999999998888887 9999998853 35689999999999899999999885 89
Q ss_pred ccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCcc----chhheeeEcC
Q 012095 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT----GWRLGYIAGP 317 (471)
Q Consensus 242 G~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~----G~R~G~v~~~ 317 (471)
|.+. +.+++|.++|++| ++++|+|+++....... . .+..+..+++.|++|.+ +| |+|+||++++
T Consensus 172 G~~~--~~l~~i~~la~~~-g~~livD~~~~~~~~~~----~----~~~~~~d~~~~s~~K~~-~p~g~Ggp~~g~l~~~ 239 (398)
T cd00613 172 GVFE--DLIKEIADIAHSA-GALVYVDGDNLNLTGLK----P----PGEYGADIVVGNLQKTG-VPHGGGGPGAGFFAVK 239 (398)
T ss_pred ceec--chHHHHHHHHHhc-CCEEEEEeccccccCCC----C----hHHcCCCEEEeeccccC-CCCCCCCCceeEEEEh
Confidence 9985 3469999999999 99999999875422100 0 11234569999999998 56 8999999999
Q ss_pred HHHHHHHHHH-----------------------------HhcccCCCC-hHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Q 012095 318 KHFVAACNKI-----------------------------QSQFTSGAS-SISQKAGVAALGLGYAGGEVVSKMVKAFRER 367 (471)
Q Consensus 318 ~~~i~~l~~~-----------------------------~~~~~~~~~-~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~ 367 (471)
+++++.+... .....++.+ ...+.+...+... ....+++++++++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~---~~~g~~~~~~~~~~~ 316 (398)
T cd00613 240 KELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYL---GPEGLKEIAERAHLN 316 (398)
T ss_pred hhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHh---CHHHHHHHHHHHHHH
Confidence 8888764110 000111122 2333333333332 356788889999999
Q ss_pred HHHHHHHhcCCCCCeeeCCCcceE--EeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee
Q 012095 368 RDFLVKSFGELEGVKMSEPQGAFY--LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 445 (471)
Q Consensus 368 r~~l~~~L~~~~g~~~~~p~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~ 445 (471)
++++.+.|+++++.. .+.+.++ ++++++...+ .+..++++.|+++ ||.+.... ....+.+|+++.
T Consensus 317 ~~~l~~~L~~~~~~~--~~~~~~~~~v~~~~~~~~~---------~~~~~~~~~L~~~-gi~~~~~~-~~~~~~lRis~~ 383 (398)
T cd00613 317 ANYLAKRLKEVGGVL--PFNGPFFHEFVLRLPPLYG---------IRAEDLAKALIDG-GFHAPTMY-LPVDGTLMIEPT 383 (398)
T ss_pred HHHHHHHHHhcCCcc--cCCCCeeEEEEEEcCCcch---------HHHHHHHHhhhhc-Cccccccc-cCCCCeEEEEcC
Confidence 999999999884443 2344444 4666653100 1567899998876 88764422 123478999998
Q ss_pred c--CHHHHHHHHHHH
Q 012095 446 A--SLTTLQAAVERI 458 (471)
Q Consensus 446 ~--~~e~i~~~~~~l 458 (471)
. ++++|+++++.|
T Consensus 384 ~~~t~edid~~~~~L 398 (398)
T cd00613 384 ETETKEELDALLEAL 398 (398)
T ss_pred CCCCHHHHHHHHHhC
Confidence 6 899999998764
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=249.71 Aligned_cols=336 Identities=19% Similarity=0.198 Sum_probs=243.9
Q ss_pred CCCeEEcCCCC-CCCCChHHHHHHHHHHHHcCCCC---CCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 94 GVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFTR---YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 94 g~~~i~l~~g~-~~~~~p~~v~~a~~~~~~~~~~~---Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
++++++|+.++ ..+..++++++++.+++.+...+ +....|..+..+.+++.+.+..| .+..+++++|+ ++..
T Consensus 44 ~~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g---~~~~~~~~SG~-~An~ 119 (406)
T PRK13393 44 PREVTVWCSNDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHG---KEAALLFTSGY-VSNW 119 (406)
T ss_pred CccEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhC---CCcEEEeCCcH-HHHH
Confidence 45789998887 77777899999999998763222 11223445556666666666666 23445555554 5777
Q ss_pred HHHHHhcC--CCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc----cCCcEEEEcCCCCCccc
Q 012095 170 QAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT----EKSRLLILCSPSNPTGS 243 (471)
Q Consensus 170 ~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~----~~~~~i~i~~p~NPtG~ 243 (471)
.++..+.. +||.|++....|.+....++..|++++.++. .|++.+++.++ +++++|++++++||+|.
T Consensus 120 ~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~ 192 (406)
T PRK13393 120 AALSTLGSRLPGCVILSDELNHASMIEGIRHSRAEKRIFRH-------NDPADLERKLSDLDPHRPKLVAFESVYSMDGD 192 (406)
T ss_pred HHHHHhhcCCCCCEEEEccchhHHHHHHHHHcCCeEEEeCC-------CCHHHHHHHHHhccCCCCEEEEEcCCCCCCCc
Confidence 78887665 7888888888888888888888988877764 26677776664 35678889999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCC-CCCceEEEecCCcccCccchhheeeEcCHHHHH
Q 012095 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG-MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA 322 (471)
Q Consensus 244 ~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~ 322 (471)
+.+ +++|.++|++| ++++|+||+|....+++.+.. +....+ ..+..|+++||||.+|++| ||+++++++++
T Consensus 193 ~~~---l~~i~~l~~~~-~~~livDea~~~g~~g~~G~g-~~~~~~~~~~~~i~~~tlsKa~g~~G---G~~~~~~~~~~ 264 (406)
T PRK13393 193 IAP---IAEICDVAEKH-GAMTYLDEVHAVGLYGPRGGG-IAEREGLADRLTIIEGTLAKAFGVMG---GYITGSAALCD 264 (406)
T ss_pred hhC---HHHHHHHHHHc-CCEEEEECCccccccCCCCCc-hhhhcCCCCCCeEEEEeCchhhcccC---ceeeCCHHHHH
Confidence 999 99999999999 999999999985555433221 112111 1234688899999999888 99999999999
Q ss_pred HHHHHHhcc--cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCcc
Q 012095 323 ACNKIQSQF--TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYY 400 (471)
Q Consensus 323 ~l~~~~~~~--~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~ 400 (471)
.+......+ +.+.++..+.++.++|+. .+++ ...+.+++++++++.+.|+++ |+.+.++.+.++ .+.+++.
T Consensus 265 ~l~~~~~~~~~t~~~~p~~~aa~~aaL~~---~~~~-~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~i~-~v~~~~~- 337 (406)
T PRK13393 265 FIRSFASGFIFTTSLPPAVAAGALASVRH---LKAS-SAERERHQDRVARLRARLDKA-GIPHLPNPSHIV-PVMVGDP- 337 (406)
T ss_pred HHHHhCcCceecCccCHHHHHHHHHHHHH---HhhC-HHHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCeE-EEEeCCH-
Confidence 988765543 445677778888888875 1222 233466788899999999887 777776777664 4444321
Q ss_pred CCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012095 401 GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAA--SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~---~~~iRis~~~--~~e~i~~~~~~l~~~l~~~ 465 (471)
.+..++.++|++++||.+.++..... .+++|+++.. +++++++++++|+++++++
T Consensus 338 ----------~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~~~~~~ 397 (406)
T PRK13393 338 ----------VLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEIWARL 397 (406)
T ss_pred ----------HHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhc
Confidence 14578888888767999998765442 2689999985 9999999999999998764
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-29 Score=251.96 Aligned_cols=329 Identities=16% Similarity=0.167 Sum_probs=232.8
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCC----CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHH
Q 012095 97 VIRLAAGEPDFDTPVLIAEAGINAIREGF----TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 172 (471)
Q Consensus 97 ~i~l~~g~~~~~~p~~v~~a~~~~~~~~~----~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~ 172 (471)
.+.|..+-+.. +|+.+.+++.+.+.... ..|....+..++.+.+.+.+.+.+|. ++++|++++|+++++..++
T Consensus 18 ~~yl~~~~~~~-~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~--~~~~v~~~~~~t~~l~~~~ 94 (397)
T TIGR01976 18 RVFFDNPAGTQ-IPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNA--DPPEVVFGANATSLTFLLS 94 (397)
T ss_pred eEEecCCccCC-CCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCC--CCCeEEEeCCHHHHHHHHH
Confidence 68888777664 57778888888775421 23533344444455555555555564 4557999999999998777
Q ss_pred HHh---cCCCCeEEEcCCCCCChH----HHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCC
Q 012095 173 LAV---CSPGDEVIIPAPFWVSYP----EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245 (471)
Q Consensus 173 ~~l---~~~gd~Vlv~~p~y~~~~----~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~ 245 (471)
.++ ++|||+|++++|.|.+.. ..++..|++++.++++.+ ++.+|++++++++++++++|++++|+||||..+
T Consensus 95 ~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~ 173 (397)
T TIGR01976 95 RAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEA-TGELHPDDLASLLSPRTRLVAVTAASNTLGSIV 173 (397)
T ss_pred HHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEecccc-CCCcCHHHHHHhcCCCceEEEEeCCCCCCCccC
Confidence 765 689999999999987643 456778999999998743 366899999999998999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHH
Q 012095 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 325 (471)
Q Consensus 246 ~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~ 325 (471)
+ +++|.++|++| ++++++|+++.. +.... .+.. .+..+++.|++|.+| +|+||+++++++++.+.
T Consensus 174 ~---~~~i~~~~~~~-~~~~ivD~a~~~----~~~~~---~~~~-~~~d~~~~s~~K~~g---~~~G~l~~~~~~~~~l~ 238 (397)
T TIGR01976 174 D---LAAITELVHAA-GALVVVDAVHYA----PHGLI---DVQA-TGADFLTCSAYKFFG---PHMGILWGRPELLMNLP 238 (397)
T ss_pred C---HHHHHHHHHHc-CCEEEEehhhhc----cccCC---CHHH-cCCCEEEEechhhcC---CceEEEEEcHHHHhhCC
Confidence 8 99999999999 999999999753 22111 2211 244577789999975 46899999999888765
Q ss_pred HHHhccc----------CCCChHHHHHHHHHHh---ccCCC---------hHHHHHHHHHHHHHHHHHHHHhcCCCCCee
Q 012095 326 KIQSQFT----------SGASSISQKAGVAALG---LGYAG---------GEVVSKMVKAFRERRDFLVKSFGELEGVKM 383 (471)
Q Consensus 326 ~~~~~~~----------~~~~~~~q~aa~~~L~---~~~~~---------~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~ 383 (471)
.....+. .+++.....++.++++ ..... ..++++..++..+.++++.+.|.+++++++
T Consensus 239 ~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~ 318 (397)
T TIGR01976 239 PYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTL 318 (397)
T ss_pred CccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 4322111 1223233333333333 21000 013566777788889999999998867887
Q ss_pred eCC-----CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC-----------CCCcEEEEeec-
Q 012095 384 SEP-----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-----------DDTCIRISYAA- 446 (471)
Q Consensus 384 ~~p-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~-----------~~~~iRis~~~- 446 (471)
..+ .+++ +.+.++.. +..++.++|.++ ||.+..|..+. ..+++|+|++.
T Consensus 319 ~~~~~~~~~~~~-~~~~~~~~------------~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 384 (397)
T TIGR01976 319 YGVARLAARVPT-VSFTVHGL------------PPQRVVRRLADQ-GIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHY 384 (397)
T ss_pred eCCCCccCCCce-EEEEeCCc------------CHHHHHHHHHHC-CeEEEeCccchHHHHHHhCCCCCCCeEEEEeecc
Confidence 654 4454 55566532 567889888665 99999886553 23689999986
Q ss_pred -CHHHHHHHHHHH
Q 012095 447 -SLTTLQAAVERI 458 (471)
Q Consensus 447 -~~e~i~~~~~~l 458 (471)
++++++++++.|
T Consensus 385 ~t~~di~~l~~~l 397 (397)
T TIGR01976 385 NTAEEVDRLLEAL 397 (397)
T ss_pred CCHHHHHHHHHhC
Confidence 889999988764
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-29 Score=247.72 Aligned_cols=297 Identities=15% Similarity=0.189 Sum_probs=213.2
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCC
Q 012095 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 213 (471)
Q Consensus 134 ~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~ 213 (471)
..++++.+++++ |. +++++|+|+++++..++.+++++||.|+++.++|.+....++..|++++.++++.+++
T Consensus 46 ~~~l~~~la~~~----g~----~~i~~~~g~t~al~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 117 (361)
T cd06452 46 IKDFHHDLAEFL----GM----DEARVTPGAREGKFAVMHSLCEKGDWVVVDGLAHYTSYVAAERAGLNVREVPNTGHPE 117 (361)
T ss_pred HHHHHHHHHHHc----CC----ceEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCcchHHHHHHHhcCCEEEEEecCCCCC
Confidence 356677777764 42 7899999999999999999999999999999988887778899999999999976555
Q ss_pred CcCCHHHHHhhhc-------cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCcccccc
Q 012095 214 FLLDPKVLESKLT-------EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS 286 (471)
Q Consensus 214 ~~ld~e~l~~~l~-------~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~ 286 (471)
|.+|+++++++++ ++++++++++|+||||...+ +++|+++|+++ +++||+|++|..... ......
T Consensus 118 ~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~---~~~i~~~~~~~-~~~vivD~a~~~g~~----~~~~~~ 189 (361)
T cd06452 118 YHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHD---AKKIAKVCHEY-GVPLLLNGAYTVGRM----PVSGKE 189 (361)
T ss_pred cccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeecc---HHHHHHHHHHc-CCeEEEECCcccCCc----CCCHHH
Confidence 7899999999886 36889999999999999887 88999999999 999999999974211 111111
Q ss_pred CCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhccc--------CCCChHHHHHHHHHHhccCCChHHHH
Q 012095 287 LPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT--------SGASSISQKAGVAALGLGYAGGEVVS 358 (471)
Q Consensus 287 ~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~--------~~~~~~~q~aa~~~L~~~~~~~~~~~ 358 (471)
.+..+++.|+||.++ ++.|+||+++++++++++.+...+++ .+.+...+.++.+++.. ..++++
T Consensus 190 ----~~~d~~~~s~~K~l~-~~~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~~~ 261 (361)
T cd06452 190 ----LGADFIVGSGHKSMA-ASAPIGVLATTEEWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPH---VKERVK 261 (361)
T ss_pred ----cCCCEEEecCCcccc-CCCCeEEEEECHHHHHHHhccccccccceeeeeccccCchHHHHHHHHHHH---HHHHHH
Confidence 245689999999998 55699999999999998876553321 11222234444444442 123343
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCeeeC--CCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC
Q 012095 359 KMVKAFRERRDFLVKSFGELEGVKMSE--PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD 436 (471)
Q Consensus 359 ~~~~~~~~~r~~l~~~L~~~~g~~~~~--p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~ 436 (471)
...+. .++++++.+.|++++|+++.. +....++.++.+.... .... ......++.++|+++ ||.+.. .+.
T Consensus 262 ~~~~~-~~~~~~l~~~L~~l~g~~v~~~~~~~~n~~~~~~~~~~~-~~~~--~~~~~~~~~~~L~~~-gI~~~~---~~~ 333 (361)
T cd06452 262 RWDEE-VEKARWFVAELEKIEGIKQLGEKPKNHDLMFFETPSFDE-IAKK--HKRRGYFLYSELKKR-GIHGIK---PGL 333 (361)
T ss_pred HHHHH-HHHHHHHHHHHhcCCCeEEECCCCCCCceEEEEcCCcch-hhhh--ccccchhHHHHHHHc-CceEEc---CCC
Confidence 33333 345578899999998988762 2233345666652100 0000 001234688988776 998532 344
Q ss_pred CCcEEEEeec-CHHHHHHHHHHHHHHH
Q 012095 437 DTCIRISYAA-SLTTLQAAVERIKKGL 462 (471)
Q Consensus 437 ~~~iRis~~~-~~e~i~~~~~~l~~~l 462 (471)
..++|++... ++++++.+++.|+++.
T Consensus 334 ~~~~ri~~~g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 334 TRYFKLSTYGLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred ceEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 5689999954 8899999999998654
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-29 Score=254.32 Aligned_cols=328 Identities=19% Similarity=0.255 Sum_probs=239.1
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCC--CCHHHHHHHH---HHHHHHhCCCCCCCcEEEeCChHHHHHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNA--GTLELRSAIC---HKLKEENGLSYTPDQILVSNGAKQSILQ 170 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~--G~~~lr~~ia---~~~~~~~g~~~~~~~i~it~G~~~al~~ 170 (471)
..+.|+.|.+++.+|..+.++.... +....|.|.. -...+++.+. +.+.+.+|. +.+++++|+|+++++..
T Consensus 69 ~~~~lg~g~~~~~~p~~~~~~~~~~--~~~~~y~~~~~~~~~g~~~~~~e~~~~la~l~g~--~~~~v~~~~g~t~~~~~ 144 (447)
T PRK00451 69 YPSFLGAGAYDHYIPAVVDHIISRS--EFYTAYTPYQPEISQGTLQAIFEYQTMICELTGM--DVANASMYDGATALAEA 144 (447)
T ss_pred CcccCcccccCCcCcHHHHHHHhch--hHHHhcCCCCCccchHHHHHHHHHHHHHHHHhCC--CcceEEecCcHHHHHHH
Confidence 5678999999998888776665443 2234465511 1233566665 455778885 45689999999999998
Q ss_pred HHHHhc-CCCCeEEEcCCCCCChHHHHHH----cCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCC
Q 012095 171 AVLAVC-SPGDEVIIPAPFWVSYPEMARI----ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245 (471)
Q Consensus 171 ~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~----~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~ 245 (471)
++.++. .+||+|+++++.|+++...++. .|++++.+++++ + .+|++++++++++++++|++++| ||||.+.
T Consensus 145 ~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~--~-~~d~~~l~~~i~~~t~~v~l~~p-n~tG~v~ 220 (447)
T PRK00451 145 ALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYED--G-VTDLEALEAAVDDDTAAVVVQYP-NFFGVIE 220 (447)
T ss_pred HHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCC--C-CCCHHHHHHhcCCCeEEEEEECC-CCCCeeC
Confidence 888874 7999999999999999877654 699999999864 3 68999999999989999999999 8999998
Q ss_pred CHHHHHHHHHHHHhCCCeEEEE--ccCCCccccCCCCccccccCCCCCCceEEEe---cCCcccCccchhheeeEcCHHH
Q 012095 246 PKNLLDEIARIVAKHPRLLVLS--DEIYEHIIYAPATHTSFASLPGMWERTLTVN---GFSKAFAMTGWRLGYIAGPKHF 320 (471)
Q Consensus 246 ~~~~l~~i~~l~~~~~~~~ii~--De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~---S~SK~~g~~G~R~G~v~~~~~~ 320 (471)
+ +++|.++|+++ ++++++ |.+... . ...+...+..+++. +|||.++++|+|+||+++++++
T Consensus 221 ~---l~~I~~~a~~~-~~~~iv~~d~~~~g-----~-----~~~~~~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~ 286 (447)
T PRK00451 221 D---LEEIAEIAHAG-GALFIVGVDPVSLG-----L-----LKPPGEYGADIVVGEGQPLGIPLSFGGPYLGFFATRKKL 286 (447)
T ss_pred C---HHHHHHHHHHC-CCEEEEEcChHHhc-----c-----CCCcccCCCCEEEECCCcCCCCCCCCCCCchHHHhhHHH
Confidence 8 99999999999 998887 433211 0 00112234456665 7888888899999999999988
Q ss_pred HHHH----------------------------HHHHhcccCCCChHHH-HHHHHHHhccCCChHHHHHHHHHHHHHHHHH
Q 012095 321 VAAC----------------------------NKIQSQFTSGASSISQ-KAGVAALGLGYAGGEVVSKMVKAFRERRDFL 371 (471)
Q Consensus 321 i~~l----------------------------~~~~~~~~~~~~~~~q-~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l 371 (471)
++.+ ++.+...+.+.+...+ .++..++... .+..++++.+++.++++++
T Consensus 287 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~--~~~g~~~~~~~~~~~~~~l 364 (447)
T PRK00451 287 VRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLL--GPEGLRELAEQNHQKAHYL 364 (447)
T ss_pred HhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHH
Confidence 8873 1122222333333333 3333344321 3567899999999999999
Q ss_pred HHHhcCCCCCeeeCCCcceEEe--EecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeec-
Q 012095 372 VKSFGELEGVKMSEPQGAFYLF--IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAA- 446 (471)
Q Consensus 372 ~~~L~~~~g~~~~~p~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~- 446 (471)
.+.|++++|+++. .+++|.+ ++++. +..+++++|++++.+...++..|+. .+++|+++..
T Consensus 365 ~~~L~~~~g~~~~--~~~~~~~~~v~~~~-------------~~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs~~~~ 429 (447)
T PRK00451 365 AERLAEIGGVELF--DGPFFNEFVVRLPK-------------PAEEVNEALLEKGILGGYDLGRYYPELGNHLLVCVTEK 429 (447)
T ss_pred HHHHhhcCCEEec--CCCeEEEEEEecCC-------------CHHHHHHHHHhcCCCCCcccccccCCcCCEEEEecCCC
Confidence 9999998888875 4556654 44431 5678999998874443456666652 4799999973
Q ss_pred -CHHHHHHHHHHHHHHH
Q 012095 447 -SLTTLQAAVERIKKGL 462 (471)
Q Consensus 447 -~~e~i~~~~~~l~~~l 462 (471)
++++++++++.|++++
T Consensus 430 ~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 430 RTKEDIDALVAALGEVL 446 (447)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 8899999999998764
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-29 Score=249.96 Aligned_cols=336 Identities=14% Similarity=0.090 Sum_probs=237.7
Q ss_pred EEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCC--CC--CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHH
Q 012095 98 IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPN--AG--TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 173 (471)
Q Consensus 98 i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~--~G--~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~ 173 (471)
+.|..+.... +|+.+.+++.+.+.....+++.. .| ..++.+.+.+.+++.+| .++++|++|+|+++++..++.
T Consensus 2 ~yld~a~~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g--~~~~~i~~~~g~t~a~~~~~~ 78 (381)
T PRK02948 2 IYLDYAATTP-MSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIG--GEEQGIYFTSGGTESNYLAIQ 78 (381)
T ss_pred EeccCCCCCC-CCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEeCcHHHHHHHHHH
Confidence 4555555443 47778899888776422222110 11 12344444455555556 367899999999999998888
Q ss_pred Hhc----CCCCeEEEcCCCCCChHH---HHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCC
Q 012095 174 AVC----SPGDEVIIPAPFWVSYPE---MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 246 (471)
Q Consensus 174 ~l~----~~gd~Vlv~~p~y~~~~~---~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~ 246 (471)
+++ ++||.|++....|+++.. .++..|++++.++++. ++.+|++++++.+++++++|++++|+||||.+++
T Consensus 79 ~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~ 156 (381)
T PRK02948 79 SLLNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDK--SGLIRLVDLERAITPDTVLASIQHANSEIGTIQP 156 (381)
T ss_pred HHHHhccCCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCC--CCCCCHHHHHHhcCCCCEEEEEECCcCCcEeehh
Confidence 875 578999999977776554 4567799999999863 3568999999999888999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHH-HHHHH
Q 012095 247 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF-VAACN 325 (471)
Q Consensus 247 ~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~-i~~l~ 325 (471)
+++|.++|+++ ++++++|+++... ..... +. ..+..+++.|++|.+|.+| +|++++++++ +..+.
T Consensus 157 ---~~~I~~l~~~~-~~~vivD~~~~~g----~~~~~---~~-~~~~d~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~~ 222 (381)
T PRK02948 157 ---IAEIGALLKKY-NVLFHSDCVQTFG----KLPID---VF-EMGIDSLSVSAHKIYGPKG--VGAVYINPQVRWKPVF 222 (381)
T ss_pred ---HHHHHHHHHHc-CCEEEEEChhhcc----ccccC---cc-cCCCCEEEecHHhcCCCCc--EEEEEEcCCCCCCCcc
Confidence 88899999999 9999999776532 11111 11 1356688999999999888 8999887664 11111
Q ss_pred H----HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC-cceE----EeEec
Q 012095 326 K----IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-GAFY----LFIDF 396 (471)
Q Consensus 326 ~----~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~-~g~~----~~~~~ 396 (471)
. .......+++.+++.++.++|+. ..+++++.+++.++.++++.+.|+++ |+++.... .++. +.+.+
T Consensus 223 ~~~~~~~~~~~~t~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~v~~~~~~~~~~~~i~~~~~ 298 (381)
T PRK02948 223 PGTTHEKGFRPGTVNVPGIAAFLTAAEN---ILKNMQEESLRFKELRSYFLEQIQTL-PLPIEVEGHSTSCLPHIIGVTI 298 (381)
T ss_pred cCCCCCCCcCCCCccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEeCCCccCcCCEEEEEe
Confidence 0 01112346788888989888875 34678888999999999999999988 66554322 2221 11222
Q ss_pred CCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC--------------CC-----CCcEEEEeec--CHHHHHHHH
Q 012095 397 STYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF--------------GD-----DTCIRISYAA--SLTTLQAAV 455 (471)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f--------------~~-----~~~iRis~~~--~~e~i~~~~ 455 (471)
+. .+..++...|. ++||.+..|..+ +. .+++|+|++. +++|+++++
T Consensus 299 ~~------------~~~~~~~~~l~-~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~ 365 (381)
T PRK02948 299 KG------------IEGQYTMLECN-RRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTI 365 (381)
T ss_pred CC------------CCHHHHHHhcc-cCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHH
Confidence 22 15667777764 559999988742 11 3689999986 889999999
Q ss_pred HHHHHHHHhhCCCC
Q 012095 456 ERIKKGLLTLRPGV 469 (471)
Q Consensus 456 ~~l~~~l~~~~~~~ 469 (471)
+.|+++++++-.++
T Consensus 366 ~~l~~~~~~~~~~~ 379 (381)
T PRK02948 366 HALETIGNQFYRGV 379 (381)
T ss_pred HHHHHHHHHHhccc
Confidence 99999987764443
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-29 Score=252.19 Aligned_cols=347 Identities=15% Similarity=0.161 Sum_probs=240.4
Q ss_pred cCCCeEEcCCCC--CCCC-ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|.++||+..|. ..++ .++.+.+++.+++.. ...|....+..++...+++.+.+.+|. ..+++++++|+++++.
T Consensus 34 dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~v~~~~sgsea~~ 110 (413)
T cd00610 34 DGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAK-LTHFSLGFFYNEPAVELAELLLALTPE--GLDKVFFVNSGTEAVE 110 (413)
T ss_pred CCCEEEEcCccHHhhccCCCCHHHHHHHHHHHHh-CcCccCcccCCHHHHHHHHHHHHhCCC--CCCEEEEcCcHHHHHH
Confidence 678899999874 4455 578899999998865 345544445678888888888887774 5789999999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCChHHHHHHcC-------------CEEEEecCCCC----CCCcCCHHHHHhhhcc---
Q 012095 170 QAVLAVC--SPGDEVIIPAPFWVSYPEMARIAD-------------ATPVILPTRIS----ENFLLDPKVLESKLTE--- 227 (471)
Q Consensus 170 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~G-------------~~~~~v~~~~~----~~~~ld~e~l~~~l~~--- 227 (471)
.+++.+. .++|.|++.+++|+++.......+ .+++.+|.+.. .++..|++.|++.+++
T Consensus 111 ~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 190 (413)
T cd00610 111 AALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPE 190 (413)
T ss_pred HHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCC
Confidence 9998774 578999999999998765443322 23556665421 1245589999998875
Q ss_pred CCcEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCc
Q 012095 228 KSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (471)
Q Consensus 228 ~~~~i~i~~p~NPtG~~~-~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~ 306 (471)
++++++++..+|++|..+ +++++++|.++|++| ++++|+||+|..+...+.. .. ....+ ....+.||||.++
T Consensus 191 ~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~Dev~~g~g~~g~~-~~-~~~~~---~~~d~~t~sK~l~- 263 (413)
T cd00610 191 EVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKH-GILLIADEVQTGFGRTGKM-FA-FEHFG---VEPDIVTLGKGLG- 263 (413)
T ss_pred CEEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCcch-hh-HhhcC---CCCCeEEEccccc-
Confidence 344555544467789876 777899999999999 9999999999976333321 11 11111 1112558999998
Q ss_pred cchhheeeEcCHHHHHHH--HHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCC---CC
Q 012095 307 TGWRLGYIAGPKHFVAAC--NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE---GV 381 (471)
Q Consensus 307 ~G~R~G~v~~~~~~i~~l--~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~---g~ 381 (471)
.|+|+||+++++++++.+ .......+++.+++++.++.++|+.- ++ .++.++++++++++.+.|+++. ++
T Consensus 264 ~g~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l---~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~ 338 (413)
T cd00610 264 GGLPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVL---EE--EGLLENAAELGEYLRERLRELAEKHPL 338 (413)
T ss_pred CccccEEEEEcHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 589999999999999986 33334456678899999888888641 11 3455666666677766666541 22
Q ss_pred eeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHH
Q 012095 382 KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIK 459 (471)
Q Consensus 382 ~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~ 459 (471)
.......|.++++.++...... .........+++.|+++ ||.+.|+. .+++|++++. +++++++++++|+
T Consensus 339 ~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~-gv~v~~~~----~~~lR~~~~~~~t~~~i~~~~~~l~ 410 (413)
T cd00610 339 VGDVRGRGLMIGIELVKDRATK---PPDKELAAKIIKAALER-GLLLRPSG----GNVIRLLPPLIITEEEIDEGLDALD 410 (413)
T ss_pred EEEeecCceEEEEEEecCCCcC---CcchHHHHHHHHHHHHC-CeEEeecC----CCEEEEECCCcCCHHHHHHHHHHHH
Confidence 1112234566777775421000 00001456788888776 99999975 5789998775 8899999999998
Q ss_pred HHH
Q 012095 460 KGL 462 (471)
Q Consensus 460 ~~l 462 (471)
+++
T Consensus 411 ~~l 413 (413)
T cd00610 411 EAL 413 (413)
T ss_pred HhC
Confidence 763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-28 Score=244.56 Aligned_cols=333 Identities=13% Similarity=0.166 Sum_probs=236.1
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.+||+..|. ..++. ++.+.+++.+++.+.. .++.. ...+....+++.+.+..+ .+.++++++++++..
T Consensus 38 dG~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~-~~~~~-~~~~~~~~l~~~l~~~~~----~~~~~~~~sGseA~e 111 (403)
T PRK05093 38 QGKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLW-HISNV-FTNEPALRLAKKLIDATF----AERVFFANSGAEANE 111 (403)
T ss_pred CCCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhcC-cccCc-cCCHHHHHHHHHHHhhCC----CCEEEEeCchHHHHH
Confidence 578899998873 33443 7889999999886522 22221 223334566666655433 368999999999999
Q ss_pred HHHHHhc-------CCC-CeEEEcCCCCCChHHHH-HHcC------------CEEEEecCCCCCCCcCCHHHHHhhhccC
Q 012095 170 QAVLAVC-------SPG-DEVIIPAPFWVSYPEMA-RIAD------------ATPVILPTRISENFLLDPKVLESKLTEK 228 (471)
Q Consensus 170 ~~~~~l~-------~~g-d~Vlv~~p~y~~~~~~~-~~~G------------~~~~~v~~~~~~~~~ld~e~l~~~l~~~ 228 (471)
.+++... .++ +.|+..+-+|++....+ ...| .+++.++. .|++.+++.+.++
T Consensus 112 ~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~ 184 (403)
T PRK05093 112 AAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPF-------NDLAAVKAVIDDH 184 (403)
T ss_pred HHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCC-------CCHHHHHHHhcCC
Confidence 8888641 123 56777788777754322 2211 11222221 1889999999878
Q ss_pred CcEEEEcCCCCCcccCC--CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCc
Q 012095 229 SRLLILCSPSNPTGSVY--PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (471)
Q Consensus 229 ~~~i~i~~p~NPtG~~~--~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~ 306 (471)
+++|+++ |.||+|.++ +.+.+++|+++|++| ++++|+||+|.++.+.+.. .+.....-..+ +.||||.++
T Consensus 185 ~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~-g~~lI~DEv~~g~g~~g~~-~~~~~~~~~pd----i~s~sK~l~- 256 (403)
T PRK05093 185 TCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQH-NALLIFDEVQTGMGRTGDL-FAYMHYGVTPD----ILTSAKALG- 256 (403)
T ss_pred eEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCCCccc-hhhhhcCCCCC----EEEeccccc-
Confidence 8888777 888887665 899999999999999 9999999999987666532 12111111112 678999998
Q ss_pred cchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCC---CCee
Q 012095 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE---GVKM 383 (471)
Q Consensus 307 ~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~---g~~~ 383 (471)
+|||+||+++++++++.+.......+++.+++.|.++.++|+.. ...+..+.++++++++.+.|+++. ++..
T Consensus 257 ~G~rig~vv~~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~-----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 331 (403)
T PRK05093 257 GGFPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDII-----NTPEVLEGVKARRQRFVDGLQKINQKYGVFS 331 (403)
T ss_pred CCcceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH-----hhccHHHHHHHHHHHHHHHHHHHHhhCCCeE
Confidence 99999999999999998876545566788999999999988641 123556788899999999998751 2222
Q ss_pred eCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHH
Q 012095 384 SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKG 461 (471)
Q Consensus 384 ~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~ 461 (471)
..+.+|+++|+.++... ..+..+|++.|+++ ||.+.|+. .+++|++++. ++++|++++++|+++
T Consensus 332 ~~~~~G~~~~~~l~~~~---------~~~~~~~~~~l~~~-Gv~v~~~g----~~~lRl~~~~~~~~~~i~~~~~~l~~~ 397 (403)
T PRK05093 332 EIRGMGLLIGAELKPQY---------KGRARDFLNAAAEE-GVMVLVAG----PDVLRFAPSLVIEEADIDEGLARFEKA 397 (403)
T ss_pred eEeeCceEEEEEecCcc---------hhHHHHHHHHHHHC-CeEEecCC----CCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 34466888999886421 01467899998876 89998843 4789996554 899999999999999
Q ss_pred HHhh
Q 012095 462 LLTL 465 (471)
Q Consensus 462 l~~~ 465 (471)
+.++
T Consensus 398 l~~~ 401 (403)
T PRK05093 398 VAKV 401 (403)
T ss_pred HHHh
Confidence 8754
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-28 Score=243.51 Aligned_cols=327 Identities=15% Similarity=0.099 Sum_probs=248.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCC
Q 012095 109 TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPF 188 (471)
Q Consensus 109 ~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~ 188 (471)
.|+.+++++... ..+| ...+..++++.+.+.+++.+|.+ ..+.+++++|+++++..++..++++||+|++.++.
T Consensus 20 ~~~~V~~a~~~~----~~~~-~~~~~~~~~~~~~~~l~~~~g~~-~~~~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~~~ 93 (401)
T PLN02409 20 IPERVLRAMNRP----NEDH-RSPAFPALTKELLEDVKYIFKTK-SGTPFIFPTTGTGAWESALTNTLSPGDKVVSFRIG 93 (401)
T ss_pred CCHHHHHHhcCC----CCCC-CCHHHHHHHHHHHHHHHHHhCCC-CCCEEEEeCCcHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 466777766542 3333 34567899999999999999864 23578889999999999999999999999999998
Q ss_pred CCCh--HHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc----CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC
Q 012095 189 WVSY--PEMARIADATPVILPTRISENFLLDPKVLESKLTE----KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 262 (471)
Q Consensus 189 y~~~--~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~----~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~ 262 (471)
|.+. ...++..|++++.++.+.+ ..+|++++++++++ ++++|++++++||||.+++.+++.++++ |+++ +
T Consensus 94 ~~~~~~~~~~~~~g~~v~~v~~~~~--~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~-~~~~-g 169 (401)
T PLN02409 94 QFSLLWIDQMQRLNFDVDVVESPWG--QGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLD-CAQH-P 169 (401)
T ss_pred chhHHHHHHHHHcCCceEEEECCCC--CCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHh-hhcc-C
Confidence 8766 3677888999999998643 34799999999975 7899999999999999999444444444 9999 9
Q ss_pred eEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHh-------------
Q 012095 263 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS------------- 329 (471)
Q Consensus 263 ~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~------------- 329 (471)
+++|+|++++. +.... .+. .++..+++.|.+|+++.| .++||+++++++++++.....
T Consensus 170 ~~~vvD~v~s~----g~~~i---d~~-~~~~D~~~~s~~K~l~~P-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (401)
T PLN02409 170 ALLLVDGVSSI----GALDF---RMD-EWGVDVALTGSQKALSLP-TGLGIVCASPKALEASKTAKSPRVFFDWADYLKF 240 (401)
T ss_pred cEEEEEccccc----CCccc---ccc-ccCccEEEEcCccccCcC-CCcceeEECHHHHHHHhcCCCCCeecCHHHHHHH
Confidence 99999999874 21111 121 134457888889999643 479999999998887653210
Q ss_pred -----cccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC----cceEEeEecCCcc
Q 012095 330 -----QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAFYLFIDFSTYY 400 (471)
Q Consensus 330 -----~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~----~g~~~~~~~~~~~ 400 (471)
...++++...+.++.++++.- .+..++.+.++++++++++.+.|+++ |+++..+. .+..+++.+|+.+
T Consensus 241 ~~~g~~~~~Tp~~~~~~al~~al~~~--~~~G~e~i~~~~~~l~~~l~~~L~~~-g~~~~~~~~~~~s~~v~~~~~p~~~ 317 (401)
T PLN02409 241 YKLGTYWPYTPSIQLLYGLRAALDLI--FEEGLENVIARHARLGEATRLAVEAW-GLKLCTKKPEWRSDTVTAVVVPEGI 317 (401)
T ss_pred HhcCCCCCCCccHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcccceEEEeCCCCC
Confidence 113356777777888887741 13457888999999999999999887 88776542 2233567777542
Q ss_pred CCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhCCC
Q 012095 401 GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRPG 468 (471)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~~~~ 468 (471)
+..++.+.|++++||.+.+|.+-.....|||+... +.+++..++..|++++.+++..
T Consensus 318 -----------~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~g~~ 376 (401)
T PLN02409 318 -----------DSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLKDVGYP 376 (401)
T ss_pred -----------CHHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 67789888988899999998764446899999987 8899999999999999887643
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-28 Score=241.89 Aligned_cols=334 Identities=16% Similarity=0.190 Sum_probs=234.9
Q ss_pred hcCCCeEEcCCCCC--CCC-ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGEP--DFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~~--~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+.++|+..|.. .++ .++.+.+++.+++.+... + ...+..++++.+++++.+..+ .+.+++++++++++
T Consensus 26 ~~G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~~-~-~~~~~~~~~~~la~~l~~~~~----~~~~~~~~sG~~a~ 99 (377)
T PRK02936 26 NNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWH-V-SNLFTNSLQEEVASLLAENSA----GDLVFFCNSGAEAN 99 (377)
T ss_pred CCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccc-c-ccccCCHHHHHHHHHHHhcCC----CCEEEEeCCcHHHH
Confidence 36788999999973 233 378899999999876322 2 233557899999999976544 25899999999999
Q ss_pred HHHHHHh-cCCC-CeEEEcCCCCCChH-HHHHHcCCEEE---EecCCCCCCCc--CCHHHHHhhhccCCcEEEEcCCCCC
Q 012095 169 LQAVLAV-CSPG-DEVIIPAPFWVSYP-EMARIADATPV---ILPTRISENFL--LDPKVLESKLTEKSRLLILCSPSNP 240 (471)
Q Consensus 169 ~~~~~~l-~~~g-d~Vlv~~p~y~~~~-~~~~~~G~~~~---~v~~~~~~~~~--ld~e~l~~~l~~~~~~i~i~~p~NP 240 (471)
..+++.. ..+| +.|++.+++|++.. ......+.... ..|..++..+. .|++.+++.+.+++++|++..++++
T Consensus 100 ~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ii~e~i~~~ 179 (377)
T PRK02936 100 EAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNEEVAAVMLEVVQGE 179 (377)
T ss_pred HHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhccCCeEEEEEecccCC
Confidence 9988854 2355 67999999888543 22333332111 11111110010 1789999999888899999888999
Q ss_pred cccC-CCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHH
Q 012095 241 TGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH 319 (471)
Q Consensus 241 tG~~-~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~ 319 (471)
+|.. .+++.+++|.++|++| ++++|+||+|.++.+.+.. ..+.......+ +.+|||.++ +|+|+||++++++
T Consensus 180 ~G~~~~~~~~l~~l~~l~~~~-~~~lI~DEv~~g~g~~g~~-~~~~~~~~~~d----i~t~sK~l~-~G~~ig~v~~~~~ 252 (377)
T PRK02936 180 GGVIPADPAFLQEVQTLCKKF-GALLIIDEVQTGIGRTGTL-FAYEQFGLDPD----IVTVAKGLG-NGIPVGAMIGKKE 252 (377)
T ss_pred CCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCchh-hHHHhhCCCCc----EEEEccccc-CCCccEEEEEcHH
Confidence 9976 6889999999999999 9999999999887655431 12112211112 347999999 9999999999999
Q ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC----CCCCeeeCCCcceEEeEe
Q 012095 320 FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE----LEGVKMSEPQGAFYLFID 395 (471)
Q Consensus 320 ~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~----~~g~~~~~p~~g~~~~~~ 395 (471)
+++.+.......+++.+++.|.++.++|+... .++.+++++++.+++.+.|++ ++.+....+ .|+++|+.
T Consensus 253 ~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~-----~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~-~g~~~~i~ 326 (377)
T PRK02936 253 LGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIK-----QPSFLEEVQEKGEYFLQKLQEELEHLECVKNIRG-KGLMIGIE 326 (377)
T ss_pred HHhhccCCCCCCCCCCCHHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHHHHHHHHHhhCCcEEeEee-cceEEEEE
Confidence 99988655455567789999999999997521 123344555566666655554 333332333 46789999
Q ss_pred cCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe--ecCHHHHHHHHHHHHHHH
Q 012095 396 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY--AASLTTLQAAVERIKKGL 462 (471)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~--~~~~e~i~~~~~~l~~~l 462 (471)
+++ +...+.+.|.+ .||.+.|+. .+++|+++ ..+++++++++++|++++
T Consensus 327 ~~~-------------~~~~~~~~l~~-~gv~v~~~g----~~~lRi~p~~~~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 327 CTE-------------EVAPVIEQLRE-EGLLVLSAG----PNVIRLLPPLVVTKEELDQAVYLLKKVL 377 (377)
T ss_pred ecc-------------hHHHHHHHHHH-CCeEEecCC----CCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 863 35677777665 499998853 47899996 449999999999998763
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-27 Score=241.91 Aligned_cols=225 Identities=14% Similarity=0.205 Sum_probs=179.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCC
Q 012095 126 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADA 201 (471)
Q Consensus 126 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~G~ 201 (471)
.+| +++....|++.|+++. ..+++++++|+++++..++.+++++||.|++++|+|..|...+ ...|+
T Consensus 78 ~R~-~~Pt~~~Le~~lA~le--------g~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi 148 (427)
T PRK07049 78 SRF-NHPNSEIVEDRLAVYE--------GAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGV 148 (427)
T ss_pred cCC-CCcCHHHHHHHHHHHh--------CCCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCc
Confidence 456 5556688999999985 2457888899999999999999999999999999999997654 56799
Q ss_pred EEEEecCCCCCCCcCCHHHHHhhhc-----cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHh---CCCeEEEEccCCCc
Q 012095 202 TPVILPTRISENFLLDPKVLESKLT-----EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK---HPRLLVLSDEIYEH 273 (471)
Q Consensus 202 ~~~~v~~~~~~~~~ld~e~l~~~l~-----~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~---~~~~~ii~De~y~~ 273 (471)
+++.++. . .|++.+++++. +++|+|++++|+||||.+++.+++.+|++.|.+ + +++||+||+|..
T Consensus 149 ~~v~~~~---~---~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~-~~~vvvDety~~ 221 (427)
T PRK07049 149 GAVGFAD---G---LSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGH-RPIIACDNTLLG 221 (427)
T ss_pred EEEEEeC---C---CCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccC-CCEEEEECCccc
Confidence 8777762 1 46777776663 478999999999999999998888888887643 6 899999999875
Q ss_pred cccCCCCccccccCCCCCCceEEEecCCcccC-ccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCC
Q 012095 274 IIYAPATHTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA 352 (471)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~ 352 (471)
..+. .++ ..+..|+++||||.+| ++|+|+||+++++++++.+...+..++.+.+++.|.++...|+.
T Consensus 222 ~~~~----~pl-----~~g~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~~~~g~~ls~~~a~l~~r~L~t--- 289 (427)
T PRK07049 222 PVFQ----KPL-----EHGADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRSAIGTQLDPHSCWMLGRSLET--- 289 (427)
T ss_pred cccC----Ccc-----ccCCCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCh---
Confidence 3221 111 1245699999999998 79999999999999999999988888888999988877666542
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcCCCCCe
Q 012095 353 GGEVVSKMVKAFRERRDFLVKSFGELEGVK 382 (471)
Q Consensus 353 ~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~ 382 (471)
+...+++..++++.+.+.|++.|++.
T Consensus 290 ----l~~R~~~~~~~a~~la~~L~~~p~V~ 315 (427)
T PRK07049 290 ----LVLRMERANRNARAVAEFLRDHPKVE 315 (427)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 44555666889999999999987764
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-28 Score=241.37 Aligned_cols=313 Identities=17% Similarity=0.206 Sum_probs=226.4
Q ss_pred ChHHHHHHHHHHHHcCCC--CCCCC-------CCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcC--
Q 012095 109 TPVLIAEAGINAIREGFT--RYTPN-------AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS-- 177 (471)
Q Consensus 109 ~p~~v~~a~~~~~~~~~~--~Y~~~-------~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~-- 177 (471)
+|+.+.+++.+.+..... ..++. ....++|+.+++++ |.+ +++++++|+|+++++..++.++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~g~t~a~~~~~~~l~~~~ 85 (373)
T cd06453 11 KPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFI----NAP-SPDEIIFTRNTTEAINLVAYGLGRAN 85 (373)
T ss_pred CCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHh----CCC-CCCeEEEeCCHHHHHHHHHHHhhhcC
Confidence 367788888877643211 01111 12235556666554 532 367999999999999999999987
Q ss_pred -CCCeEEEcCCCCCCh----HHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHH
Q 012095 178 -PGDEVIIPAPFWVSY----PEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 252 (471)
Q Consensus 178 -~gd~Vlv~~p~y~~~----~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~ 252 (471)
+||+|++++++|++. ...++..|++++.++.+ .++.+|++++++.+++++++|++++|+||||.+.+ +++
T Consensus 86 ~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~---~~~ 160 (373)
T cd06453 86 KPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVD--DDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINP---VKE 160 (373)
T ss_pred CCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecC--CCCCcCHHHHHHHhcCCceEEEEeCcccccCCcCC---HHH
Confidence 899999999999874 33456789999999986 34569999999999889999999999999999999 789
Q ss_pred HHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhc--
Q 012095 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ-- 330 (471)
Q Consensus 253 i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~-- 330 (471)
|.++|++| +++|++|++|..... ...+.. .+..+++.|++|.++. .++||+++++++++.+......
T Consensus 161 i~~~~~~~-~~~li~D~a~~~~~~----~~~~~~----~~~d~~~~s~~K~~~~--~g~g~~~~~~~~~~~~~~~~~g~~ 229 (373)
T cd06453 161 IGEIAHEA-GVPVLVDGAQSAGHM----PVDVQD----LGCDFLAFSGHKMLGP--TGIGVLYGKEELLEEMPPYGGGGE 229 (373)
T ss_pred HHHHHHHc-CCEEEEEhhhhcCce----eeeccc----cCCCEEEeccccccCC--CCcEEEEEchHHhhcCCCeecCCC
Confidence 99999999 999999999874221 111111 2334777888999974 5689999999988876643211
Q ss_pred -------------------ccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC---Cc
Q 012095 331 -------------------FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP---QG 388 (471)
Q Consensus 331 -------------------~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p---~~ 388 (471)
...+++.....++.++++.. .+..++.++++.++.++++.+.|.+++|+++..+ .+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l--~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 307 (373)
T cd06453 230 MIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYL--EKIGMEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRA 307 (373)
T ss_pred ccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHH--HHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccC
Confidence 01234444555555555431 1234577888888999999999999888887632 33
Q ss_pred ceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC--------CCCCcEEEEeec--CHHHHHHHHHHH
Q 012095 389 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF--------GDDTCIRISYAA--SLTTLQAAVERI 458 (471)
Q Consensus 389 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f--------~~~~~iRis~~~--~~e~i~~~~~~l 458 (471)
+ ++++.++.. +..++.+.|.+ +||.+.+|..+ +.++++|+|++. +.++++++++.|
T Consensus 308 ~-~~~~~~~~~------------~~~~i~~~l~~-~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 308 G-VVSFNLEGI------------HPHDVATILDQ-YGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred C-eEEEEECCc------------CHHHHHHHHHH-CCEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 4 456666532 67788888766 59999887643 336799999996 889999998764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=236.84 Aligned_cols=319 Identities=13% Similarity=0.175 Sum_probs=228.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcC-
Q 012095 108 DTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA- 186 (471)
Q Consensus 108 ~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~- 186 (471)
.+++.+.+++.... ..+. ....++.+.+.+.+++..|.+-+...|+++.|+++++..++..++.+||.|++..
T Consensus 9 ~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~vi~~~~ 82 (355)
T TIGR03301 9 STSATVRDAMLVDW----CHWD--SEFNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLLVLIN 82 (355)
T ss_pred CCCHHHHHHhhhhc----cCCC--HHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccCCCCeEEEECC
Confidence 34566777666522 2221 1223555666666666667542223688899999999999999998888866555
Q ss_pred CCCCC-hHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc--CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCe
Q 012095 187 PFWVS-YPEMARIADATPVILPTRISENFLLDPKVLESKLTE--KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL 263 (471)
Q Consensus 187 p~y~~-~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~--~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~ 263 (471)
+.|.. +...++..|.+++.++.+. ++.+|++++++++++ +.+.+++++++||||...+ +++|+++|++| ++
T Consensus 83 ~~~~~~~~~~a~~~g~~~~~i~~~~--~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~---~~~i~~l~~~~-~~ 156 (355)
T TIGR03301 83 GAYGERLAKICEYLGIPHTDLNFSE--YEPPDLNRIEEALAADPDITHVATVHHETTTGILNP---LEAIAKVARSH-GA 156 (355)
T ss_pred CchhhHHHHHHHHcCCceEEEecCC--CCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhH---HHHHHHHHHHc-CC
Confidence 45544 4567888999999998753 456899999999864 4556778899999999998 89999999999 99
Q ss_pred EEEEccCCCccccCCCCccccccCCCCCCceEEEecCCccc-CccchhheeeEcCHHHHHHHHHHH--------------
Q 012095 264 LVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAGPKHFVAACNKIQ-------------- 328 (471)
Q Consensus 264 ~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~R~G~v~~~~~~i~~l~~~~-------------- 328 (471)
++|+|+++... .....+.. .+..+++.|++|.+ |++| +||+++++++++.+....
T Consensus 157 ~livD~~~s~g----~~~~~~~~----~~~d~~~~s~~K~l~~~~G--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (355)
T TIGR03301 157 VLIVDAMSSFG----AIPIDIEE----LDVDALIASANKCLEGVPG--FGFVIARRDLLEASAGNARSLYLDLYDQWAYM 226 (355)
T ss_pred EEEEEeccccC----Ccccchhh----cCccEEEecCCcccccCCc--eeEEEECHHHHHHhhCCCCCceeeHHHHHHHh
Confidence 99999877642 11112221 34568899999987 5555 799999999988765210
Q ss_pred ---hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC---CcceEEeEecCCccCC
Q 012095 329 ---SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP---QGAFYLFIDFSTYYGS 402 (471)
Q Consensus 329 ---~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p---~~g~~~~~~~~~~~~~ 402 (471)
....++++...+.++.++++.-. .+.++++..++++++++++.+.|+++ |+++..+ .+++++|+++|....
T Consensus 227 ~~~~~~~~t~~~~~~~a~~~al~~~~-~~g~~~~~~~~~~~~~~~~~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~- 303 (355)
T TIGR03301 227 EKTGKWRFTPPTHTVYAFAQALEELE-AEGGVPARIARYRRNRELLVDGLRAL-GFQPLLPERWQSPIIVSFLYPDDPD- 303 (355)
T ss_pred hhcCCCCCCCcHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHHHHHHHc-CCeeecCCCCCCCcEEEEECCCCCc-
Confidence 11234577777777777776410 01226778888999999999999887 8775433 345667888874210
Q ss_pred cccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHH
Q 012095 403 EAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKG 461 (471)
Q Consensus 403 ~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~ 461 (471)
.+..++.++|.++ ||.+.+|..+.. +++||++.. +.++++++++.|+++
T Consensus 304 --------~~~~~~~~~l~~~-gi~i~~~~~~~~-~~iRis~~~~~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 304 --------FDFDDFYQELKER-GFVIYPGKLTLA-DTFRIGTIGEIDAADIERLLEAIKDA 354 (355)
T ss_pred --------chHHHHHHHHHHC-CEEEECCccccc-cEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 1456788887765 999999876654 799999854 889999999999875
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=239.90 Aligned_cols=341 Identities=15% Similarity=0.180 Sum_probs=232.6
Q ss_pred EEcCCCC-CCCCChHHHHHHHHHHHHc-------CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 98 IRLAAGE-PDFDTPVLIAEAGINAIRE-------GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 98 i~l~~g~-~~~~~p~~v~~a~~~~~~~-------~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
++|+.++ ..+...+++++++.+++.+ ....|+...+..+|++.+++++ | ..+.+++++|.++.+
T Consensus 1 ~~f~s~dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~----g---~e~al~~~sG~~a~~- 72 (392)
T PLN03227 1 LNFATHDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFL----G---TESAILYSDGASTTS- 72 (392)
T ss_pred CCCcCcCccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHh----C---CCcEEEecCcHHHHH-
Confidence 3566665 6677788999999998876 2234665566778888888876 3 346788888877777
Q ss_pred HHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc-----------cCCcEEEEcCCC
Q 012095 170 QAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT-----------EKSRLLILCSPS 238 (471)
Q Consensus 170 ~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~-----------~~~~~i~i~~p~ 238 (471)
.++.+++++||.|+++++.|.++...+...+++++.++.... -+++.+.+.+. +++++|++.+++
T Consensus 73 ~~i~~l~~~GD~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~d~----~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~ 148 (392)
T PLN03227 73 STVAAFAKRGDLLVVDRGVNEALLVGVSLSRANVRWFRHNDM----KDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLY 148 (392)
T ss_pred HHHHHhCCCCCEEEEeccccHHHHHHHHHcCCeEEEeCCCCH----HHHHHHHHHhhhhccccccccCCCcEEEEEcCCc
Confidence 577778999999999999999999888888998888876411 13444443442 257788899999
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCC--CccccccCCCCCCceEEEecCCcccCccchhheeeEc
Q 012095 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA--THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 316 (471)
Q Consensus 239 NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~ 316 (471)
||+|.+.+ +++|.++|++| ++++|+||+|....++.. .......+.+..+..|++.|+||.+| ++.||+++
T Consensus 149 ~~~G~i~~---l~~i~~l~~~~-g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g---~~gg~v~~ 221 (392)
T PLN03227 149 KNTGTLAP---LKELVALKEEF-HYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFG---SVGGMTVG 221 (392)
T ss_pred CCCCcccC---HHHHHHHHHHc-CCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhh---ccCcEEec
Confidence 99999999 88999999999 999999999983323221 11111122222455799999999876 44599999
Q ss_pred CHHHHHHHHHHHhcccCCC--ChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCe----------ee
Q 012095 317 PKHFVAACNKIQSQFTSGA--SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK----------MS 384 (471)
Q Consensus 317 ~~~~i~~l~~~~~~~~~~~--~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~----------~~ 384 (471)
++++++.+.......+++. +++.+.++.+++... .+ .++++++++++.+++.+.|++. +.. +.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~---~~-~~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~rg~~~~~ 296 (392)
T PLN03227 222 SEEVVDHQRLSGSGYCFSASAPPFLAKADATATAGE---LA-GPQLLNRLHDSIANLYSTLTNS-SHPYALKLRNRLVIT 296 (392)
T ss_pred CHHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHH---hc-CHHHHHHHHHHHHHHHHHHHhc-CCccccccccccccC
Confidence 9999988765444344444 466777777666531 11 3456777888888888888752 221 11
Q ss_pred CCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC-------CCCCCCcEEEEeec--CHHHHHHHH
Q 012095 385 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD-------AFGDDTCIRISYAA--SLTTLQAAV 455 (471)
Q Consensus 385 ~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~-------~f~~~~~iRis~~~--~~e~i~~~~ 455 (471)
....+..+.+.+.+.... ..........++++.|+++ ||.+.+.. .+-++..+|+++.. ++|+|++++
T Consensus 297 ~~~~~~i~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~-Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~eei~~~~ 373 (392)
T PLN03227 297 SDPISPIIYLRLSDQEAT--RRTDETLILDQIAHHSLSE-GVAVVSTGGHVKKFLQLVPPPCLRVVANASHTREDIDKLL 373 (392)
T ss_pred CCCCCCEEEEEeCCHHHh--hhhhhhhHHHHHHHHHHHC-CCEEEecccccCCcCCCCCCceEEEEecCCCCHHHHHHHH
Confidence 112233455666431000 0000000124788888876 89886521 23345789999987 999999999
Q ss_pred HHHHHHHHhh
Q 012095 456 ERIKKGLLTL 465 (471)
Q Consensus 456 ~~l~~~l~~~ 465 (471)
+.|+++++++
T Consensus 374 ~~l~~~~~~~ 383 (392)
T PLN03227 374 TVLGEAVEAI 383 (392)
T ss_pred HHHHHHHHHH
Confidence 9999998764
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-28 Score=242.05 Aligned_cols=309 Identities=17% Similarity=0.176 Sum_probs=232.1
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcC------------
Q 012095 110 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS------------ 177 (471)
Q Consensus 110 p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~------------ 177 (471)
+..+.+.+...+......|+...+..++++++++++.+.+|.+..++++++|+|+++++..++++++.
T Consensus 12 ~~~~~~~~~~~~n~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~ 91 (345)
T cd06450 12 PALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGR 91 (345)
T ss_pred HHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhccccc
Confidence 44566666666655556698889999999999999999999754456899999999999999988753
Q ss_pred CC--CeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc------CCcEEEEcCCCCCcccCCCHHH
Q 012095 178 PG--DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNL 249 (471)
Q Consensus 178 ~g--d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~------~~~~i~i~~p~NPtG~~~~~~~ 249 (471)
++ +.|++++++|.++...++..|++++.++++++ +.+|+++|++++++ +++++++++|+||||.+.+
T Consensus 92 ~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~--- 166 (345)
T cd06450 92 GIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDED--GRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP--- 166 (345)
T ss_pred ccCCeEEEEcCcchhHHHHHHHHHhcCeEEeeeCCC--CCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC---
Confidence 33 47889999999999899989999999998753 46999999999987 7888889999999999987
Q ss_pred HHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHh
Q 012095 250 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS 329 (471)
Q Consensus 250 l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~ 329 (471)
+++|+++|+++ ++++++|++|..+.+........ .....+-..+..|++|.++ ++.++||++.+
T Consensus 167 ~~~i~~~~~~~-~~~l~vD~a~~~~~~~~~~~~~~--~~~~~~~d~~~~s~~K~l~-~p~g~g~~~~~------------ 230 (345)
T cd06450 167 LEEIADLAEKY-DLWLHVDAAYGGFLLPFPEPRHL--DFGIERVDSISVDPHKYGL-VPLGCSAVLVR------------ 230 (345)
T ss_pred HHHHHHHHHHh-CCeEEEechhhHHHhhChhhHHH--hcCccccCEEEEchhHhhC-CCcchHHHHHH------------
Confidence 89999999999 99999999998766432111111 0111122356679999875 77889998655
Q ss_pred cccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC-CCcceEEeEecCCccCCcccCCC
Q 012095 330 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFG 408 (471)
Q Consensus 330 ~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~-p~~g~~~~~~~~~~~~~~~~~~~ 408 (471)
.+.+.++...+. ...+++.+++..++++++.+.|.+++|+.+.. ++++++.| +++....
T Consensus 231 -------~~~~~~~l~~l~-----~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f-~~~~~~~------- 290 (345)
T cd06450 231 -------ALKLWATLRRFG-----RDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCF-RLKPSVK------- 290 (345)
T ss_pred -------HHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEE-EECCcch-------
Confidence 444445555553 45677888888899999999999988887654 56666544 4543100
Q ss_pred CCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec---CHHHHHHHHHHHHH
Q 012095 409 KIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAAVERIKK 460 (471)
Q Consensus 409 ~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~---~~e~i~~~~~~l~~ 460 (471)
...+..++.++|.++ |+.+.++..+..++++|+++.. +.++++++++.|++
T Consensus 291 ~~~~~~~i~~~L~~~-g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 291 LDELNYDLSDRLNER-GGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred hhHHHHHHHHHHHhc-CCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 001456888888766 5556665555556799999984 78999999998875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=241.77 Aligned_cols=323 Identities=18% Similarity=0.147 Sum_probs=235.7
Q ss_pred ChHHHHHHHHHHHHcCC------CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhc-----C
Q 012095 109 TPVLIAEAGINAIREGF------TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-----S 177 (471)
Q Consensus 109 ~p~~v~~a~~~~~~~~~------~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~-----~ 177 (471)
+++.+++++.+.+.+.. +.| +..+...++++++++... .|. .++++|++|+|+++++..+++++. +
T Consensus 11 ~~~~v~~~~~~~~~~~~~n~~~~~~~-~~~~~~~l~~a~~~~~~~-~~~-~~~~~i~~t~g~teal~~~~~~~~~~~~~~ 87 (382)
T TIGR03403 11 LDPKVKELMDPFFCDIYGNPNSLHQF-GTATHPAIAEALDKLYKG-INA-RDLDDIIITSCATESNNWVLKGVYFDEILK 87 (382)
T ss_pred CCHHHHHHHHHHHHhcCcCCccccHH-HHHHHHHHHHHHHHHHHH-cCc-CCCCeEEEeCCHHHHHHHHHHHHHHhhccc
Confidence 46688999988776421 123 234567888888887753 332 257899999999999999888762 4
Q ss_pred C-CCeEEEcCCCCCChHHH---HHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHH
Q 012095 178 P-GDEVIIPAPFWVSYPEM---ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 253 (471)
Q Consensus 178 ~-gd~Vlv~~p~y~~~~~~---~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i 253 (471)
+ +|+|+++...|+++... ++..|++++.+|++. ++.+|++.++++++++++++++++|+||||.+++ +++|
T Consensus 88 ~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~--~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~---~~~I 162 (382)
T TIGR03403 88 GGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINE--QGTITAEQVREAITEKTALVSVMWANNETGMIFP---IKEI 162 (382)
T ss_pred CCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCC--CCCCCHHHHHHhcccCCeEEEEEcccCCCccccC---HHHH
Confidence 5 47899998777766543 566899999999864 3568999999999989999999999999999999 7889
Q ss_pred HHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHH--HHH---HHHH
Q 012095 254 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV--AAC---NKIQ 328 (471)
Q Consensus 254 ~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i--~~l---~~~~ 328 (471)
.++|+++ |+++++|+++.. +.....+.. .+..+++.|++|.+|.+| +|+++.++... ..+ ....
T Consensus 163 ~~la~~~-g~~~ivD~a~~~----g~~~~~~~~----~~~D~~~~s~~K~~gp~G--~g~l~vr~~~~~~p~~~g~~~~~ 231 (382)
T TIGR03403 163 GEICKER-GVLFHTDAVQAI----GKIPVDVQK----AGVDFLSFSAHKFHGPKG--VGGLYIRKGVELTPLFHGGEHMG 231 (382)
T ss_pred HHHHHHc-CCEEEEechhhc----CCCccCccc----cCCCEEEEcchhhCCCCc--eEEEEECCCCCCCCcccCCCCCC
Confidence 9999999 999999999874 211111111 233488899999988777 58776554321 101 0011
Q ss_pred hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCc---ceEEeEecCCccCCccc
Q 012095 329 SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG---AFYLFIDFSTYYGSEAE 405 (471)
Q Consensus 329 ~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~---g~~~~~~~~~~~~~~~~ 405 (471)
.....+++.+.+.++..+++. ..++++...+++++.++++.+.|.+++|+.+..+.. +.++.+.++..
T Consensus 232 ~~~~gt~~~~~~~al~~al~~---~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 302 (382)
T TIGR03403 232 GRRSGTLNVPYIVAMGEAMRL---ANEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIKGV------ 302 (382)
T ss_pred CcccCCcChHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeCCC------
Confidence 112345778888788888865 355677888999999999999999988998876541 22445566532
Q ss_pred CCCCCCCHHHHHHHHHHcCCEEEECCCCCC--------------C-----CCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012095 406 GFGKIENSESLCRYLLDKAQVALVPGDAFG--------------D-----DTCIRISYAA--SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 406 ~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~--------------~-----~~~iRis~~~--~~e~i~~~~~~l~~~l~~ 464 (471)
+..++...|. +.||.+..|+.+. . .+.||+|++. +++|++++++.|++++++
T Consensus 303 ------~~~~~~~~L~-~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~ 375 (382)
T TIGR03403 303 ------EGEAMLWDLN-KAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQR 375 (382)
T ss_pred ------CHHHHHHhhc-cCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 5677887765 5599999876542 1 2579999997 899999999999998877
Q ss_pred hC
Q 012095 465 LR 466 (471)
Q Consensus 465 ~~ 466 (471)
++
T Consensus 376 ~~ 377 (382)
T TIGR03403 376 LR 377 (382)
T ss_pred HH
Confidence 64
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-27 Score=229.05 Aligned_cols=333 Identities=20% Similarity=0.217 Sum_probs=257.1
Q ss_pred cCCCeEEcCCCC-CCCCChHHHHHHHHHHHHc-CC--CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 93 AGVSVIRLAAGE-PDFDTPVLIAEAGINAIRE-GF--TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 93 ~g~~~i~l~~g~-~~~~~p~~v~~a~~~~~~~-~~--~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
.|+++++|++|+ ..+..++.+++++.+++.+ +. .+-....|+..+.+.+.+.+++++| .+..+++++|-...+
T Consensus 37 ~~~~~~nf~SNdYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g---~e~al~f~SGy~AN~ 113 (388)
T COG0156 37 DGRKVLNFCSNDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLG---AEAALLFSSGFVANL 113 (388)
T ss_pred CCceeEeeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhC---CCcEEEEcccchhHH
Confidence 367899999999 7888888899999999876 22 1111236777777777777777777 556777888877655
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc------CCcEEEEcCCCCCcc
Q 012095 169 LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTG 242 (471)
Q Consensus 169 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~------~~~~i~i~~p~NPtG 242 (471)
. ++.+|++++|.|+.+.-.|.+..+.+++.+++++.+.. .|+++|++.+.+ +.++|++...-.+.|
T Consensus 114 ~-~i~~l~~~~dli~~D~lnHASiidG~rls~a~~~~f~H-------nD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdG 185 (388)
T COG0156 114 G-LLSALLKKGDLIFSDELNHASIIDGIRLSRAEVRRFKH-------NDLDHLEALLEEARENGARRKLIVTEGVFSMDG 185 (388)
T ss_pred H-HHHHhcCCCcEEEEechhhhhHHHHHHhCCCcEEEecC-------CCHHHHHHHHHhhhccCCCceEEEEeccccCCC
Confidence 5 78899999999999999999999999999999999985 388999999865 246677788889999
Q ss_pred cCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCC-CCceEEEecCCcccCccchhheeeEcCHHHH
Q 012095 243 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 321 (471)
Q Consensus 243 ~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i 321 (471)
.+.| +++|++++++| ++++++||+|+..++++.+......+... .+..|.++||||+||..| ||+.++..++
T Consensus 186 diAp---L~~l~~L~~ky-~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~G---g~v~g~~~~~ 258 (388)
T COG0156 186 DIAP---LPELVELAEKY-GALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSG---GYIAGSAALI 258 (388)
T ss_pred CcCC---HHHHHHHHHHh-CcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcccC---ceeeCcHHHH
Confidence 9999 99999999999 99999999999999886555444333222 356899999999999999 9999999999
Q ss_pred HHHHHHHhcccC--CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCc
Q 012095 322 AACNKIQSQFTS--GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTY 399 (471)
Q Consensus 322 ~~l~~~~~~~~~--~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~ 399 (471)
+.+....+++.+ +.++....++.++|+. .......+++++++..++...+... |+.+.+....+ +.+.+.+.
T Consensus 259 d~L~~~ar~~ifStalpP~~aaa~~~al~~----l~~~~~~r~~L~~~~~~~~~~~~~~-~~~~~~s~s~I-~pv~~gd~ 332 (388)
T COG0156 259 DYLRNRARPFIFSTALPPAVAAAALAALRI----LEEGPERRERLQELAAFFRSLLKAL-GLVLLPSESPI-IPVILGDE 332 (388)
T ss_pred HHHHHhCCceeccCCCCHHHHHHHHHHHHH----HHhCHHHHHHHHHHHHHHHHHHHhc-CCccCCCCCCe-eeeEeCCH
Confidence 999887555433 3455555566667764 2334566777777777777555554 66654444444 55555432
Q ss_pred cCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCC---CcEEEEeec--CHHHHHHHHHHHHHH
Q 012095 400 YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD---TCIRISYAA--SLTTLQAAVERIKKG 461 (471)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~---~~iRis~~~--~~e~i~~~~~~l~~~ 461 (471)
..+.++...|+++ ||++.+......+ ..+|+++.. ++++|+.+++.|.++
T Consensus 333 -----------~~a~~~s~~l~~~-Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 333 -----------ERALEASRALLEE-GIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred -----------HHHHHHHHHHHHC-CeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 1477889999988 9999998877654 589999987 999999999988764
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-27 Score=236.14 Aligned_cols=341 Identities=14% Similarity=0.113 Sum_probs=235.0
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCC-C---C----CCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 97 VIRLAAGEPDFDTPVLIAEAGINAIREGF-T---R----YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 97 ~i~l~~g~~~~~~p~~v~~a~~~~~~~~~-~---~----Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
.|+|.--.-.-++++.+.+++.+...... . . +.......++++.+++++ | .+++++++|+++++
T Consensus 20 ~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~----g----~~~~~~~~g~t~a~ 91 (387)
T PRK09331 20 FINLDPIQRGGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFL----G----MDEARVTHGAREGK 91 (387)
T ss_pred ccccChhhcCCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHh----C----CCcEEEeCCHHHHH
Confidence 45544333333457888899888763211 0 1 111223567777777775 4 24688999999999
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc-------CCcEEEEcCCCCCc
Q 012095 169 LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-------KSRLLILCSPSNPT 241 (471)
Q Consensus 169 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~-------~~~~i~i~~p~NPt 241 (471)
..++.+++++||.|+++.++|.+....++..|++++.++.+.+.++.+|++++++++++ ++++|++++|+|||
T Consensus 92 ~~al~~l~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~t 171 (387)
T PRK09331 92 FAVMHSLCKKGDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNY 171 (387)
T ss_pred HHHHHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCC
Confidence 99999999999999999999888888889999999999984334577999999998863 68899999999999
Q ss_pred ccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHH
Q 012095 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 321 (471)
Q Consensus 242 G~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i 321 (471)
|...+ +++|+++|++| |+++++|++|..... ...... .+..+++.|++|+++ .+.++||++++++++
T Consensus 172 G~~~~---l~~I~~la~~~-g~~livD~a~~~g~~----~~~~~~----~g~D~~~~s~~K~l~-~~~~~G~l~~~~~~i 238 (387)
T PRK09331 172 GNLAD---AKKVAKVAHEY-GIPFLLNGAYTVGRM----PVDGKK----LGADFIVGSGHKSMA-ASAPSGVLATTEEYA 238 (387)
T ss_pred ccccc---HHHHHHHHHHc-CCEEEEECCcccCCc----CCCHHH----cCCCEEEeeCccccc-CCCCEEEEEECHHHH
Confidence 99998 99999999999 999999999985221 111111 244588999999997 566999999999998
Q ss_pred HHHHHHHhcc--------cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC--CCcceE
Q 012095 322 AACNKIQSQF--------TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE--PQGAFY 391 (471)
Q Consensus 322 ~~l~~~~~~~--------~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~--p~~g~~ 391 (471)
+.+.+....+ ..+.++....++.++++. ..+.+. ..++..++++++.+.|.+++|+++.. +....+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~---~~~~~~-~~~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~i 314 (387)
T PRK09331 239 DKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPH---VVERVK-RWDEEVKKARWFVDELEKIEGFKQLGEKPRNHDL 314 (387)
T ss_pred hhcccccCCCcccceeeeceecCchHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHHHHHHhcCCCEEEeccCcCcCCe
Confidence 8876543211 112222233334444432 123332 34455667778999999998988773 222333
Q ss_pred EeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec-CHHHHHHHHHHHHHHHHhhCCCC
Q 012095 392 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGLLTLRPGV 469 (471)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~-~~e~i~~~~~~l~~~l~~~~~~~ 469 (471)
+.++.|.... ... .......++.+.|.++ ||...+. +....+|+.... ++++++++++.|+++++++..++
T Consensus 315 ~~~~~~~~~~-~~~--~~~~~~~~~~~~L~~~-gI~~~~~---~~~~i~ri~~~g~t~~di~~l~~aL~~i~~~~~~~~ 386 (387)
T PRK09331 315 MKFETPSFDE-IAK--KHKRRGFFLYEELKKR-GIHGIKP---GATKEFKLSTYGLTWEQVEYVADAFKEIAEKYGLEV 386 (387)
T ss_pred EEEeCCchhH-Hhh--hccccchhHHHHHHHc-CceEEcc---CCceEEEEEeccCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 4555552100 000 0011346788888765 9985432 224567777744 99999999999999998876554
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=243.99 Aligned_cols=348 Identities=18% Similarity=0.217 Sum_probs=240.4
Q ss_pred hcCCCeEEcCCCCCCC--C-ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGEPDF--D-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~~~~--~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+.++|+..|.... + .++.+.+++.+++.+....+.+..+..+|+++|++++. ..+++++++|+++++
T Consensus 45 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~lae~l~~~~~-------~~~~v~~~~sGseA~ 117 (423)
T TIGR00713 45 VDGNEYIDYVLSWGPLILGHAHPRVVEAVKEALERGTSYGAPTEAEILLAKEIISRVP-------SVEMVRFVNSGTEAT 117 (423)
T ss_pred CCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHHHhCC-------cccEEEEeCCHHHHH
Confidence 3688999999998553 3 37899999999998754323366678889999988752 236899999999999
Q ss_pred HHHHHHhc--CCCCeEEEcCCCCCChHHHHHH---cCCEEEEecCCCC-------CCCc---CCHHHHHhhhc---cCCc
Q 012095 169 LQAVLAVC--SPGDEVIIPAPFWVSYPEMARI---ADATPVILPTRIS-------ENFL---LDPKVLESKLT---EKSR 230 (471)
Q Consensus 169 ~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~---~G~~~~~v~~~~~-------~~~~---ld~e~l~~~l~---~~~~ 230 (471)
..+++... ...++|+..+++|+++...+.. .|......+..+. +.+. .|+++++++++ ++++
T Consensus 118 e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~a 197 (423)
T TIGR00713 118 MSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIA 197 (423)
T ss_pred HHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcCCcEE
Confidence 99888642 2458999999999997654332 1111111111100 0000 17899999886 4677
Q ss_pred EEEE-cCCCCCcccCCC-HHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccc
Q 012095 231 LLIL-CSPSNPTGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 308 (471)
Q Consensus 231 ~i~i-~~p~NPtG~~~~-~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 308 (471)
+|++ +.|+| +|.+.+ ++.+++|.++|++| ++++|+||+|.++.++.........+. .+ +.+|||.++ +|
T Consensus 198 avi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~g~r~g~~~~~~~~~~~--pD----i~t~sK~l~-~G 268 (423)
T TIGR00713 198 GVIVEPVAGN-MGVVPPKPEFLAGLRALTEEY-GSLLIFDEVMTGFRVALGGAQEYFGVE--PD----LTTLGKIIG-GG 268 (423)
T ss_pred EEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHh-CCEEEEEccccccccCcchhHHHhCCC--cc----hhhhhhhhc-CC
Confidence 8877 57888 788877 68999999999999 999999999998855322111122222 12 347999999 99
Q ss_pred hhheeeEcCHHHHHHHHH---HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCee-e
Q 012095 309 WRLGYIAGPKHFVAACNK---IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-S 384 (471)
Q Consensus 309 ~R~G~v~~~~~~i~~l~~---~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~-~ 384 (471)
+|+||+++++++++.+.. .....+++.+++++.++.++|+.... ..+++.+++..+..++.+.+.+.+. ++.. .
T Consensus 269 ~pig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v 346 (423)
T TIGR00713 269 LPVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDE-EGVYTELDELAKRLAEGLSEVLEDT-GIPHTV 346 (423)
T ss_pred CceeeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHhc-CCCeEE
Confidence 999999999999998863 22345678999999999999875221 3467778888888888888888776 5443 2
Q ss_pred CCCcceE-EeEecCCccCCcccCCCCCCC---HHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHH
Q 012095 385 EPQGAFY-LFIDFSTYYGSEAEGFGKIEN---SESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 460 (471)
Q Consensus 385 ~p~~g~~-~~~~~~~~~~~~~~~~~~~~~---~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~ 460 (471)
...|+|+ +++..+..... .. ....+ ...+++.|+++ ||.+.++ .| +.+|+++..+++++++++++|.+
T Consensus 347 ~~~g~~~~v~~~~~~~~~~-~~--~~~~~~~~~~~~~~~l~~~-Gv~v~~~-~~---~~~~l~~~~t~~~i~~~~~~l~~ 418 (423)
T TIGR00713 347 NRVGSMFSLFFTEEEVTNY-AD--AKKSDTELFAKFFHEMLDK-GVFLPPS-QF---EACFLSAAHTEEDIENTIEAAEE 418 (423)
T ss_pred EeeccEEEEEEecCCCCCh-hh--hhcccHHHHHHHHHHHHHC-CeEEecC-Cc---cceeeECCCCHHHHHHHHHHHHH
Confidence 3445543 33443211000 00 00001 23677788875 9998764 23 35899988899999999999999
Q ss_pred HHHhh
Q 012095 461 GLLTL 465 (471)
Q Consensus 461 ~l~~~ 465 (471)
+++++
T Consensus 419 ~l~~~ 423 (423)
T TIGR00713 419 VFAEL 423 (423)
T ss_pred HHhhC
Confidence 98653
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-27 Score=239.04 Aligned_cols=327 Identities=16% Similarity=0.180 Sum_probs=231.4
Q ss_pred cCCCeEEcCCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~~~--~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.++|+..|... ++. +|.+.+++.+++.+..... . ....+....+++.+.+..+ .+.+++++++++++.
T Consensus 38 ~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~-~-~~~~~~~~~l~~~l~~~~~----~~~~~~~~SGseA~e 111 (396)
T PRK04073 38 EGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTS-R-AFHSDQLGPWYEKVAKLTG----KDMVLPMNTGAEAVE 111 (396)
T ss_pred CCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhccccc-c-ccCCHHHHHHHHHHHhcCC----CCeEEEcCChHHHHH
Confidence 68889999888633 443 7899999999887632211 1 1123444556666654433 368999999999999
Q ss_pred HHHHHhcC---------CC-CeEEEcCCCCCChH-HHHHHcCCE------------EEEecCCCCCCCcCCHHHHHhhhc
Q 012095 170 QAVLAVCS---------PG-DEVIIPAPFWVSYP-EMARIADAT------------PVILPTRISENFLLDPKVLESKLT 226 (471)
Q Consensus 170 ~~~~~l~~---------~g-d~Vlv~~p~y~~~~-~~~~~~G~~------------~~~v~~~~~~~~~ld~e~l~~~l~ 226 (471)
.+++.... +| +.|+..+.+|++.. ......+.. +..++. .|++.+++.++
T Consensus 112 ~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~i~ 184 (396)
T PRK04073 112 TAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPY-------GDLEALKAAIT 184 (396)
T ss_pred HHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCC-------CCHHHHHHhcc
Confidence 88887631 44 67888877777654 333333321 112221 27899999998
Q ss_pred cCCcEEEEcCCCCCcccCCCHH-HHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccC
Q 012095 227 EKSRLLILCSPSNPTGSVYPKN-LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305 (471)
Q Consensus 227 ~~~~~i~i~~p~NPtG~~~~~~-~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 305 (471)
+++++|+++.++||||.+++.+ .+++|.++|++| ++++|+||+|.++...+... . .... +...-+.+|||.+|
T Consensus 185 ~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~-g~lli~DEv~~g~g~~g~~~-~-~~~~---~~~pdi~~~sK~lg 258 (396)
T PRK04073 185 PNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEE-NVLFIADEIQTGLGRTGKLF-A-CDWD---NVTPDMYILGKALG 258 (396)
T ss_pred cCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEecchhCCCcCcHHH-H-hhhc---CCCCCEEEeccccc
Confidence 8888888898999999988764 699999999999 99999999999865443211 1 1111 11122446899999
Q ss_pred ccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCC--CCCee
Q 012095 306 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL--EGVKM 383 (471)
Q Consensus 306 ~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~--~g~~~ 383 (471)
++|+|+||+++++++++.+.......+++.+++++.++.++|+.. ++ ..+.++.+++++++.+.|+++ +++..
T Consensus 259 ~gg~~ig~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~---~~--~~l~~~~~~~~~~l~~~L~~l~~~~i~~ 333 (396)
T PRK04073 259 GGVFPISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIAALEVL---EE--EKLPERSLELGEYFKEQLKEIDNPMIKE 333 (396)
T ss_pred CCCCcceEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHH---Hh--cCHHHHHHHHHHHHHHHHHhhcCCcccc
Confidence 888999999999999998865445567778999999999999741 11 234456677788888888875 23444
Q ss_pred eCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe--ecCHHHHHHHHHHHHHH
Q 012095 384 SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY--AASLTTLQAAVERIKKG 461 (471)
Q Consensus 384 ~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~--~~~~e~i~~~~~~l~~~ 461 (471)
..+.| .|++++++. +..+++++|+++ ||.+.+.. +++||+++ ..+++++++++++|+++
T Consensus 334 ~~~~g-~~~~~~~~~-------------~~~~~~~~l~~~-Gv~~~~~~----~~~iRi~p~l~~t~e~i~~~~~~l~~~ 394 (396)
T PRK04073 334 VRGRG-LFIGVELNE-------------PARPYCEALKEE-GLLCKETH----ETVIRFAPPLVITKEELDWAFEKIKAV 394 (396)
T ss_pred eecce-EEEEEEecc-------------hHHHHHHHHHHC-CeEEecCC----CCEEEEECCcccCHHHHHHHHHHHHHH
Confidence 44554 557788752 467889988875 99997732 46899995 45999999999999987
Q ss_pred H
Q 012095 462 L 462 (471)
Q Consensus 462 l 462 (471)
+
T Consensus 395 l 395 (396)
T PRK04073 395 L 395 (396)
T ss_pred h
Confidence 5
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=240.77 Aligned_cols=222 Identities=22% Similarity=0.291 Sum_probs=178.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH-----HHcCCEEE
Q 012095 130 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA-----RIADATPV 204 (471)
Q Consensus 130 ~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~-----~~~G~~~~ 204 (471)
+++-..+|++.+++++ | .+.+++++|+++++..++.+++++||+|+++.|.|..+...+ +..|++++
T Consensus 74 ~~Pt~~~LE~~lA~l~----g----~~~~l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~ 145 (418)
T PLN02242 74 FNPTVLNLGRQMAALE----G----TEAAYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTT 145 (418)
T ss_pred CChhHHHHHHHHHHHh----C----CCeEEEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEE
Confidence 4555677888888775 3 357789999999999999999999999999999998887654 45788887
Q ss_pred EecCCCCCCCcCCHHHHHhhhcc-CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccc
Q 012095 205 ILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS 283 (471)
Q Consensus 205 ~v~~~~~~~~~ld~e~l~~~l~~-~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~ 283 (471)
.++. .|++++++++++ ++|+|++++|+||||.+++ +++|+++|++| +++||+|++|..+.+..
T Consensus 146 ~~d~-------~d~e~l~~~i~~~~tklV~lesp~NPtG~v~d---l~~I~~la~~~-gi~livDea~~~~~~~~----- 209 (418)
T PLN02242 146 FVDI-------TDLEAVKKAVVPGKTKVLYFESISNPTLTVAD---IPELARIAHEK-GVTVVVDNTFAPMVLSP----- 209 (418)
T ss_pred EcCC-------CCHHHHHHhcCcCCCEEEEEecCCCCCCcccC---HHHHHHHHHHh-CCEEEEECCCCccCCCH-----
Confidence 7764 289999999987 5999999999999999998 89999999999 99999999998765421
Q ss_pred cccCCCCCCceEEEecCCcccCccchh-heeeEcCHHHHHHHHHHHhc--ccCCCChHHHHHHHHHHhccCCChHHHHHH
Q 012095 284 FASLPGMWERTLTVNGFSKAFAMTGWR-LGYIAGPKHFVAACNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKM 360 (471)
Q Consensus 284 ~~~~~~~~~~~i~~~S~SK~~g~~G~R-~G~v~~~~~~i~~l~~~~~~--~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~ 360 (471)
.. .+..|++.||||.++.+|++ .||+++++++++.+...+.. ...+++...|.++..++.. ..+...
T Consensus 210 -~~----~g~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l-----~tl~~r 279 (418)
T PLN02242 210 -AR----LGADVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGALMLLGPTMNPKVAFELSERL-----PHLSLR 279 (418)
T ss_pred -HH----cCCcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcCC-----CcHHHH
Confidence 11 13559999999999889988 59999999999998876542 3445666677777666543 345667
Q ss_pred HHHHHHHHHHHHHHhcCCCCCeeeCC
Q 012095 361 VKAFRERRDFLVKSFGELEGVKMSEP 386 (471)
Q Consensus 361 ~~~~~~~r~~l~~~L~~~~g~~~~~p 386 (471)
++++.++++.+.+.|++. ++++..|
T Consensus 280 ~~~~~~~a~~la~~L~~~-~~~V~yP 304 (418)
T PLN02242 280 MKEHCRRAMEYAKRMKEL-GLKVIYP 304 (418)
T ss_pred HHHHHHHHHHHHHHHHhC-CCEEECC
Confidence 789999999999999998 5665543
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-27 Score=233.72 Aligned_cols=302 Identities=16% Similarity=0.160 Sum_probs=218.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCCh--HHHHHHcCCEEEEecCCCCCC
Q 012095 136 ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSY--PEMARIADATPVILPTRISEN 213 (471)
Q Consensus 136 ~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~--~~~~~~~G~~~~~v~~~~~~~ 213 (471)
+..+.+.+.+++..|.+-+.+.|+++.|+++++..++..+..+||.|++..++|.+. ...++..|++++.++.+. +
T Consensus 37 ~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~vlv~~~~~~~~~~~~~~~~~g~~~~~i~~~~--~ 114 (368)
T PRK13479 37 ALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLVPDNGAYGARIAQIAEYLGIAHVVLDTGE--D 114 (368)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCCchHHHHHHHHHHcCCcEEEEECCC--C
Confidence 445555555555566432235688999999999999999999999999988877665 377888999999999863 3
Q ss_pred CcCCHHHHHhhhcc--CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCC
Q 012095 214 FLLDPKVLESKLTE--KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 291 (471)
Q Consensus 214 ~~ld~e~l~~~l~~--~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~ 291 (471)
+.+|++++++++++ +++++++++|+||||...+ +++|.++|+++ ++++|+|+++.. +.....+.. +
T Consensus 115 ~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~---~~~i~~l~~~~-~~~livDa~~~~----g~~~~~~~~----~ 182 (368)
T PRK13479 115 EPPDAAEVEAALAADPRITHVALVHCETTTGILNP---LDEIAAVAKRH-GKRLIVDAMSSF----GAIPIDIAE----L 182 (368)
T ss_pred CCCCHHHHHHHHHhCCCCcEEEEEcccCccccccC---HHHHHHHHHHc-CCEEEEEccccc----CCccccccc----c
Confidence 56899999999864 4567889999999999999 88999999999 999999966532 221222222 2
Q ss_pred CceEEEecCCccc-CccchhheeeEcCHHHHHHHHHHHh-----------------cccCCCChHHHHHHHHHHhccCCC
Q 012095 292 ERTLTVNGFSKAF-AMTGWRLGYIAGPKHFVAACNKIQS-----------------QFTSGASSISQKAGVAALGLGYAG 353 (471)
Q Consensus 292 ~~~i~~~S~SK~~-g~~G~R~G~v~~~~~~i~~l~~~~~-----------------~~~~~~~~~~q~aa~~~L~~~~~~ 353 (471)
+..+++.|++|.+ |.+| +||+++++++++.+..... ...++++...+.++.++++.-. .
T Consensus 183 ~~d~~v~s~~K~l~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~-~ 259 (368)
T PRK13479 183 GIDALISSANKCIEGVPG--FGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELE-E 259 (368)
T ss_pred CceEEEecCccccccCCC--ceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHH-H
Confidence 3347778999976 6677 6999999998887654321 1123566666666666665310 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC---cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEEC
Q 012095 354 GEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ---GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 430 (471)
Q Consensus 354 ~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~p 430 (471)
..++++..++++++++++.+.|.++ |+++..+. .+..+.+.++...+ .+..++.++|.++ ||.+.+
T Consensus 260 ~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~L~~~-gi~v~~ 328 (368)
T PRK13479 260 EGGVPARGARYANNQRTLVAGMRAL-GFEPLLDAEIQSPIIVTFHAPADPA---------YDFKEFYERLKEQ-GFVIYP 328 (368)
T ss_pred hhCHHHHHHHHHHHHHHHHHHHHHc-CCcccCCchhcCceEEEEECCCCCC---------cCHHHHHHHHHHC-CEEEec
Confidence 2346777889999999999999988 87764331 22223333332100 1567889988776 999999
Q ss_pred CCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012095 431 GDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 431 g~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~~ 466 (471)
|..+ ..+++|++... ++++++++++.|+++++++.
T Consensus 329 g~~~-~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~~ 365 (368)
T PRK13479 329 GKLT-QVDTFRIGCIGDVDAADIRRLVAAIAEALYWMG 365 (368)
T ss_pred CCCC-CCCEEEEecCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 8654 34689998644 89999999999999998764
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-27 Score=233.08 Aligned_cols=288 Identities=17% Similarity=0.207 Sum_probs=206.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChH----HHHHHcCC
Q 012095 126 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADA 201 (471)
Q Consensus 126 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~G~ 201 (471)
.+| +++...+|++.++++. |. +..++++|+++++..++ .++++||+|++++|.|++.. ..++..|+
T Consensus 47 ~r~-~~pt~~~le~~la~l~----g~----~~~~~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~ 116 (366)
T PRK08247 47 SRT-GNPTRGVLEQAIADLE----GG----DQGFACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKKWNV 116 (366)
T ss_pred cCC-CCchHHHHHHHHHHHh----CC----CcEEEEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhccCc
Confidence 344 4455677888888875 32 23577888889998765 57899999999999999754 34556899
Q ss_pred EEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCc
Q 012095 202 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 281 (471)
Q Consensus 202 ~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~ 281 (471)
+++.++. .|++.+++++++++++|++++|+||+|.. .++++|+++|++| +++||+|++|......
T Consensus 117 ~v~~vd~-------~d~~~l~~~i~~~tklv~le~P~NP~~~~---~dl~~I~~la~~~-g~~lIvD~t~~~~~~~---- 181 (366)
T PRK08247 117 RFVYVNT-------ASLKAIEQAITPNTKAIFIETPTNPLMQE---TDIAAIAKIAKKH-GLLLIVDNTFYTPVLQ---- 181 (366)
T ss_pred eEEEECC-------CCHHHHHHhcccCceEEEEECCCCCCCcH---HHHHHHHHHHHHc-CCEEEEECCCcccccc----
Confidence 9998875 38999999998899999999999998754 4599999999999 9999999999532111
Q ss_pred cccccCCCCCCceEEEecCCcccCc-cchhheeeEcC-HHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHH
Q 012095 282 TSFASLPGMWERTLTVNGFSKAFAM-TGWRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 359 (471)
Q Consensus 282 ~~~~~~~~~~~~~i~~~S~SK~~g~-~G~R~G~v~~~-~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~ 359 (471)
. +...+..++++|+||.++- ++.+.||++++ +++++.+...+...+.+++++.|.++...|+. +..
T Consensus 182 ~-----p~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~t-------l~~ 249 (366)
T PRK08247 182 R-----PLEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMKT-------LAL 249 (366)
T ss_pred C-----chhcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhccCc-------HHH
Confidence 1 1113456999999999962 34689999986 67888888777766677788887766665542 445
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCe-eeCC-CcceEEeEecCCccCCcccCCCCCCCHHHHHH---------HHHHcCCEEE
Q 012095 360 MVKAFRERRDFLVKSFGELEGVK-MSEP-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCR---------YLLDKAQVAL 428 (471)
Q Consensus 360 ~~~~~~~~r~~l~~~L~~~~g~~-~~~p-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------~Ll~~~gV~v 428 (471)
..++++++++.+.+.|++.|++. +..| .||+|.| .+... .....|.+ .|.....+.+
T Consensus 250 r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~gg~~sf-~~~~~-----------~~~~~~~~~l~~~~~~~slg~~~sl~~ 317 (366)
T PRK08247 250 RMRQHEENAKAIAAFLNEQPGVTDVLYPGRGGMLSF-RLQDE-----------EWVNPFLKSLKLITFAESLGGVESFIT 317 (366)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeeEEecCCcCcEEEE-EECCH-----------HHHHHHHHcCCcceEccCCCCCceEEE
Confidence 55677999999999999998876 4444 8999887 55321 01112222 2222345677
Q ss_pred ECCCCCCC-------------CCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012095 429 VPGDAFGD-------------DTCIRISYAASLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 429 ~pg~~f~~-------------~~~iRis~~~~~e~i~~~~~~l~~~l~~ 464 (471)
.|++.+.. ++.+|+|++.. +.+..++.|.+++..
T Consensus 318 ~p~~~~~~~~~~~~r~~~gi~~~~~R~svGlE--~~~dl~~dl~~al~~ 364 (366)
T PRK08247 318 YPATQTHADIPEEIRIANGVCNRLLRFSVGIE--NVEDLIADLKQAFKQ 364 (366)
T ss_pred CCcccccccCCHHHHHhcCCCCCeEEEEeccC--CHHHHHHHHHHHHhh
Confidence 78765421 35799999883 445556666666654
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-27 Score=239.42 Aligned_cols=355 Identities=12% Similarity=0.085 Sum_probs=239.3
Q ss_pred hcCCCeEEcCCCCCCCCC---hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGEPDFDT---PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~~~~~~---p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+.++|+..|...... ++.+.+++.+++.+....+.+..+.+ ....+++++....+.+.. +++++++++++++
T Consensus 38 ~dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~~~~~~~~~~~~-~~~~la~~l~~~~~~~~~-~~~~f~~sGsea~ 115 (425)
T PRK08088 38 VEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYE-PYLELCEKMNQKVPGDFA-KKTLLVTTGSEAV 115 (425)
T ss_pred CCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHhhCCCccccccCCH-HHHHHHHHHHHhCCCCCC-CEEEEeCCcHHHH
Confidence 368889999988755433 78999999999876433332323333 345788888776654332 4666666666766
Q ss_pred HHHHHHh---cCCCCeEEEcCCCCCChHHHHHHcCCEEEE----------------ecCCCCCCCcC--CHHHHHhhhc-
Q 012095 169 LQAVLAV---CSPGDEVIIPAPFWVSYPEMARIADATPVI----------------LPTRISENFLL--DPKVLESKLT- 226 (471)
Q Consensus 169 ~~~~~~l---~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~----------------v~~~~~~~~~l--d~e~l~~~l~- 226 (471)
..+++.. .++ ..|+...++|++....+...+..... +|.+. ++... +++.+++.+.
T Consensus 116 e~Alklar~~~~r-~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~l~~~l~~ 193 (425)
T PRK08088 116 ENAVKIARAATKR-SGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPL-HGVSEDDAIASIERIFKN 193 (425)
T ss_pred HHHHHHHHHHhCC-CeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccc-cCccHHHHHHHHHHHHHh
Confidence 6665543 233 45666699999887666554432111 22111 11111 1456777774
Q ss_pred ----cCCcEEEEc-CCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCC
Q 012095 227 ----EKSRLLILC-SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 301 (471)
Q Consensus 227 ----~~~~~i~i~-~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 301 (471)
++..++++. ..+|+++...+++.+++|.++|++| ++++|+||+|.++.+.+. ...+.. .+.+..+.|||
T Consensus 194 ~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~-~~~lI~Dev~~g~g~~g~-~~~~~~----~~~~pdi~s~s 267 (425)
T PRK08088 194 DAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEH-GIMLIADEVQTGAGRTGT-LFAMEQ----MGVAADLTTFA 267 (425)
T ss_pred ccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCcc-hhHHhh----cCCCCCEEEEe
Confidence 234455553 3378888899999999999999999 999999999998654432 111111 12334589999
Q ss_pred cccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 012095 302 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 381 (471)
Q Consensus 302 K~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~ 381 (471)
|.++ +|+|+||+++++++++.+.......+++.+++.|.++.++|+.... +++++++++..+++++.+.+.+.+.|.+
T Consensus 268 K~l~-~G~rig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 345 (425)
T PRK08088 268 KSIA-GGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQ-ENLLQKANALGEKLKDGLLAIAEKHPEI 345 (425)
T ss_pred cccc-CCCcceeeEecHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 9998 9999999999999999987766667888999999999999986432 4567777766666666666655556443
Q ss_pred eeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHH
Q 012095 382 KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIK 459 (471)
Q Consensus 382 ~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~ 459 (471)
....+. |+++|+.+.+....... ......++.+.++++ ||.+.|+..| .+.||++++. ++++|++++++|+
T Consensus 346 ~~v~g~-G~~~~l~l~~~~~~~~p---~~~~~~~l~~~~~~~-Gv~~~~~~~~--~~~iRl~~~~~~t~~ei~~~i~~l~ 418 (425)
T PRK08088 346 GDVRGL-GAMIAIELFEDGDHSKP---NAKLTAQIVARARDK-GLILLSCGPY--YNVLRILVPLTIEDAQIRQGLEIIA 418 (425)
T ss_pred EEEecc-ceEEEEEEecCCCCCCC---CHHHHHHHHHHHHhC-CCEEecCCCC--CCEEEEECCCCcCHHHHHHHHHHHH
Confidence 333233 77799998432110000 001356788888776 9988886554 4789999994 7999999999999
Q ss_pred HHHHhh
Q 012095 460 KGLLTL 465 (471)
Q Consensus 460 ~~l~~~ 465 (471)
+++++.
T Consensus 419 ~~l~~~ 424 (425)
T PRK08088 419 QCFDEA 424 (425)
T ss_pred HHHHhh
Confidence 998764
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-26 Score=230.30 Aligned_cols=348 Identities=15% Similarity=0.138 Sum_probs=242.8
Q ss_pred HHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeC
Q 012095 83 ITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSN 162 (471)
Q Consensus 83 ~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~ 162 (471)
+.+..+.+.+++.+.-.+ .|...-++.+.+.+++.+.+...........+..++.+.+.+.+++.+|. +..++++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~--~~~~~~~~~ 83 (371)
T PRK13520 7 ILEELEEYRSEDLKYERI-LSSMCTEPHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHL--PDAYGYITS 83 (371)
T ss_pred HHHHHHHHHhcCCCHHHe-eeeeecCchHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCC--CCCCeEEec
Confidence 334444444455443332 33322334567788888877653221111245666667788888877784 456789999
Q ss_pred ChHHHHHHHHHHhcC----CCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCC
Q 012095 163 GAKQSILQAVLAVCS----PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 238 (471)
Q Consensus 163 G~~~al~~~~~~l~~----~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~ 238 (471)
|+++++..+++++.. +||+|++.++.|.++...++..|++++.+|.+. ++.+|+++|+++++++++.|++++++
T Consensus 84 ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~vi~~~~~ 161 (371)
T PRK13520 84 GGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFDKAADMLGVELRRAPLDD--DYRVDVKAVEDLIDDNTIGIVGIAGT 161 (371)
T ss_pred CcHHHHHHHHHHHHhhccCCCceEEecCcchHHHHHHHHHcCceEEEecCCC--CCcCCHHHHHHHHhhCCEEEEEEcCC
Confidence 999999988877654 579999999999999999999999999999853 45689999999998888888888889
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEc-C
Q 012095 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-P 317 (471)
Q Consensus 239 NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~-~ 317 (471)
|+||.+.+ +++|.++|+++ ++++++|++|..+...-........+.. .+-..+..|..|. +++|.++|+++. +
T Consensus 162 ~~tG~~~~---l~~I~~l~~~~-g~~livD~a~~~~~~~~~~~~~~~~~~~-~~vd~~~~s~~K~-~~a~~~~G~~~~~~ 235 (371)
T PRK13520 162 TELGQVDP---IPELSKIALEN-GIFLHVDAAFGGFVIPFLDDPPNFDFSL-PGVDSITIDPHKM-GLAPIPAGGILFRD 235 (371)
T ss_pred cCCcccCC---HHHHHHHHHHc-CCCEEEEecchhHHHHhhcCCCCccccC-CCCceEEECCccc-cCccCCceEEEEcC
Confidence 99999999 99999999999 9999999999865421101111111111 1223444567785 457889998775 6
Q ss_pred HHHHHHHHHHHhcc--------cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCe-eeCCCc
Q 012095 318 KHFVAACNKIQSQF--------TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQG 388 (471)
Q Consensus 318 ~~~i~~l~~~~~~~--------~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~-~~~p~~ 388 (471)
+++++.+....... ..+.+.....++.++|+.- ..+.+++.+++..++++++.+.|.++ |++ +..|..
T Consensus 236 ~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l--~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~ 312 (371)
T PRK13520 236 ESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYL--GREGYRKVVERCMENTRWLAEELKER-GFEPVIEPVL 312 (371)
T ss_pred HHHHHhhcccCccccCCCCcceEeeccChHHHHHHHHHhhh--cHhHHHHHHHHHHHHHHHHHHHHHhC-CCEEecCCCc
Confidence 66777664211111 1112344555666666531 24556788889999999999999988 887 556666
Q ss_pred ceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 012095 389 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLL 463 (471)
Q Consensus 389 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~ 463 (471)
++ +.++++ +..++.++|.++ ||.+.++. .++++|+|+.. ++++++++++.|+++++
T Consensus 313 ~~-v~~~~~--------------~~~~v~~~L~~~-gi~v~~~~---~~~~iRis~~~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 313 NI-VAFDDP--------------NPDEVREKLRER-GWRVSVTR---CPEALRIVCMPHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred eE-EEEecC--------------CHHHHHHHHHHC-CceeccCC---CCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 64 555654 467888888776 99887753 34689999874 89999999999998765
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-26 Score=231.10 Aligned_cols=300 Identities=13% Similarity=0.128 Sum_probs=219.0
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCCh--HHHHHHcCCEEEEecCCCC
Q 012095 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSY--PEMARIADATPVILPTRIS 211 (471)
Q Consensus 134 ~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~--~~~~~~~G~~~~~v~~~~~ 211 (471)
..++.+.+.+.+++..|.+-..++|++|+|+++++..++..++.+||.|++..+.+.+. ...++..|++++.++++.
T Consensus 33 ~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~~~~- 111 (363)
T TIGR02326 33 YNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGARIVQIAEYLGIPHHVVDTGE- 111 (363)
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCCC-
Confidence 34455555555666666432234799999999999999999988988877765554443 466788999999999864
Q ss_pred CCCcCCHHHHHhhhcc--CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCC
Q 012095 212 ENFLLDPKVLESKLTE--KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289 (471)
Q Consensus 212 ~~~~ld~e~l~~~l~~--~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 289 (471)
++.+|++.+++++++ +++++++++++||||..++ +++|.++|++| ++++|+|+++.. +.....+..
T Consensus 112 -~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~---i~~I~~l~~~~-g~~livD~~~~~----g~~~~~~~~--- 179 (363)
T TIGR02326 112 -VEPPDVVEVEAILAADPAITHIALVHCETTTGILNP---IEAVAKLAHRH-GKVTIVDAMSSF----GGIPIDIAE--- 179 (363)
T ss_pred -CCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCc---HHHHHHHHHHc-CCEEEEEccccc----cCcccchhh---
Confidence 445899999999874 4577788999999999999 88999999999 999999988763 222222222
Q ss_pred CCCceEEEecCCccc-CccchhheeeEcCHHHHHHHHHH------------------HhcccCCCChHHHHHHHHHHhcc
Q 012095 290 MWERTLTVNGFSKAF-AMTGWRLGYIAGPKHFVAACNKI------------------QSQFTSGASSISQKAGVAALGLG 350 (471)
Q Consensus 290 ~~~~~i~~~S~SK~~-g~~G~R~G~v~~~~~~i~~l~~~------------------~~~~~~~~~~~~q~aa~~~L~~~ 350 (471)
.+..+++.|++|.+ |.+| +||++++++.++.+... .....++++.+.+.++.++++.-
T Consensus 180 -~~~D~~~~s~~K~l~~p~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l 256 (363)
T TIGR02326 180 -LHIDYLISSANKCIQGVPG--FGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLEL 256 (363)
T ss_pred -cCccEEEecCccccccCCc--ceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHH
Confidence 23448889999987 4455 79999999888765310 01123456778888877777541
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC---CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEE
Q 012095 351 YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP---QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 427 (471)
Q Consensus 351 ~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~ 427 (471)
. .+..+++..++++++++++.+.|+++ |+.+..+ .++...|+.++.... .+..++.+.|.++ ||.
T Consensus 257 ~-~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~L~~~-gi~ 324 (363)
T TIGR02326 257 E-KEGGVAARHQRYQQNQKTLVAGMRAL-GFEPLLDDEIQSPIITSFYSPEDPD---------YRFADFYQRLKEQ-GFV 324 (363)
T ss_pred H-HhhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCceEEEEECCCCCC---------CCHHHHHHHHHHC-CEE
Confidence 0 01236778899999999999999887 7766533 355567777764200 1556788887665 999
Q ss_pred EECCCCCCCCCcEEEEee-c-CHHHHHHHHHHHHHHH
Q 012095 428 LVPGDAFGDDTCIRISYA-A-SLTTLQAAVERIKKGL 462 (471)
Q Consensus 428 v~pg~~f~~~~~iRis~~-~-~~e~i~~~~~~l~~~l 462 (471)
+.||..+. .++||+++. . +.++++++++.|++++
T Consensus 325 v~~g~~~~-~~~iRi~~~~~~~~edv~~~l~~l~~~l 360 (363)
T TIGR02326 325 IYPGKVSQ-VDCFRIGNIGEVDAADITRLLTAIGKAM 360 (363)
T ss_pred EECCcCCC-CCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 99998663 479999964 3 8899999999999876
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=233.32 Aligned_cols=328 Identities=14% Similarity=0.148 Sum_probs=233.3
Q ss_pred EcCCCCCCCCChHHHHHHHHHHHHcCC--CC---CCC----CCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 99 RLAAGEPDFDTPVLIAEAGINAIREGF--TR---YTP----NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 99 ~l~~g~~~~~~p~~v~~a~~~~~~~~~--~~---Y~~----~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|..+...+++|+.+.+++.+.+.+.. .+ |.. ..+..++|+.+++++ |.+ ..++|++|+|+++++.
T Consensus 2 yld~a~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~g~t~al~ 76 (376)
T TIGR01977 2 YFDNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLF----NAP-SSAHVVFTNNATTALN 76 (376)
T ss_pred CccCcccCCCCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHh----CcC-CCCeEEEeCCHHHHHH
Confidence 466667777788899999988776532 22 221 134456666666665 432 3458999999999999
Q ss_pred HHHHHhcCCCCeEEEcCCCCCChHH----HHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCC
Q 012095 170 QAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245 (471)
Q Consensus 170 ~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~ 245 (471)
.++.+++++||+|+++.+.|.++.. .++..|.+++.++.+. ++.+|+++++++++++++++++++|+||||.++
T Consensus 77 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~~~~~~~~v~~~~~~n~tG~~~ 154 (376)
T TIGR01977 77 IALKGLLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDN--EGLISPERIKRAIKTNTKLIVVSHASNVTGTIL 154 (376)
T ss_pred HHHHhccCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCC--CCCcCHHHHHHhcCCCCeEEEEECCCCCccccC
Confidence 9999999999999999999987653 4556699999998863 456899999999988999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHH-HHHH
Q 012095 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF-VAAC 324 (471)
Q Consensus 246 ~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~-i~~l 324 (471)
+ +++|.++|+++ ++++|+|++++.... ... +. ..+..+++.|++|.++.|. .+|.++..++. ++.+
T Consensus 155 ~---~~~i~~l~~~~-~~~livD~a~~~g~~----~~~---~~-~~~~D~~~~s~~K~l~~p~-g~g~l~~~~~~~~~~~ 221 (376)
T TIGR01977 155 P---IEEIGELAQEN-GIFFILDAAQTAGVI----PID---MT-ELAIDMLAFTGHKGLLGPQ-GTGGLYIREGIKLKPL 221 (376)
T ss_pred C---HHHHHHHHHHc-CCEEEEEhhhccCcc----CCC---ch-hcCCCEEEecccccccCCC-CceEEEEcCCcCcCce
Confidence 9 78899999999 999999999975321 111 11 1244588899999885332 35666554432 1111
Q ss_pred HH----H------------HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC-
Q 012095 325 NK----I------------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ- 387 (471)
Q Consensus 325 ~~----~------------~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~- 387 (471)
.. . .+....+++.....++.++|+.- .+...+.++++.++..+.+.+.|.+++|+++..|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~--~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ 299 (376)
T TIGR01977 222 KSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFI--EKIGIANIAKKECMLTEKLLNGLREINKVKIYGPAD 299 (376)
T ss_pred ecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC
Confidence 10 0 00111234555555555566531 12235667788888999999999988888876541
Q ss_pred ---cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC----------CCCcEEEEeec--CHHHHH
Q 012095 388 ---GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG----------DDTCIRISYAA--SLTTLQ 452 (471)
Q Consensus 388 ---~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~----------~~~~iRis~~~--~~e~i~ 452 (471)
.+..+++.+++. +..++.+.|.+++||.+..|..+. ..+.||+++.. ++++++
T Consensus 300 ~~~~~~~v~~~~~~~------------~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~ 367 (376)
T TIGR01977 300 PANRVGVVSFTVEGI------------DSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIE 367 (376)
T ss_pred ccccCCeEEEEECCC------------CHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHH
Confidence 133466677642 677888888776699999987553 24789999987 899999
Q ss_pred HHHHHHHH
Q 012095 453 AAVERIKK 460 (471)
Q Consensus 453 ~~~~~l~~ 460 (471)
.++++|++
T Consensus 368 ~~~~~l~~ 375 (376)
T TIGR01977 368 KLLEALSE 375 (376)
T ss_pred HHHHHHhh
Confidence 99999875
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=231.21 Aligned_cols=308 Identities=19% Similarity=0.198 Sum_probs=221.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCC--------
Q 012095 109 TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGD-------- 180 (471)
Q Consensus 109 ~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd-------- 180 (471)
+|+++++++.++..+ |. +..++++++++++++.+|. +++++|+|+++++..++++++++||
T Consensus 25 ~~~~v~~a~~~~~~~----~~---~~~~~~~~~~~~~a~~~g~----~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~ 93 (363)
T TIGR01437 25 VSDEVADAQKRGAQN----YF---EIKELVNKTGEYIANLLGV----EDAVIVSSASAGIAQSVAAVITRGNRYLVENLH 93 (363)
T ss_pred CCHHHHHHHHHHHhc----CC---CHHHHHHHHHHHHHHhhCC----CeEEEEcCHHHHHHHHHHHHhcCCCcchhhccc
Confidence 588999999988643 42 4578999999999888873 4789999999999999999999998
Q ss_pred -------eEEEcCCCCCCh----HHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEE-EcCCCCCcccCCCHH
Q 012095 181 -------EVIIPAPFWVSY----PEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLI-LCSPSNPTGSVYPKN 248 (471)
Q Consensus 181 -------~Vlv~~p~y~~~----~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~-i~~p~NPtG~~~~~~ 248 (471)
+|+++.|.|..| ...+...|++++.++.+ +.+|+++++++++++|++++ +++|+||+|.+.+
T Consensus 94 ~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~----~~~d~~~le~ai~~~t~ai~~v~~~~~~~g~~~~-- 167 (363)
T TIGR01437 94 DSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYA----NECSAEQLEAAITEKTAAILYIKSHHCVQKSMLS-- 167 (363)
T ss_pred ccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCC----CCCCHHHHHHhcChhceEEEEEecCCCCcCCcCC--
Confidence 999999888766 56788899999999762 35899999999999999776 6889999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHH
Q 012095 249 LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 328 (471)
Q Consensus 249 ~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~ 328 (471)
+++|+++|++| |+++|+|++|..- ...+..+ +..+++.|++|.+ +|++.||+++++++++.+....
T Consensus 168 -~~~i~~~a~~~-gi~vivD~a~~~~------~~~~~~~----g~D~~~~S~~K~l--~gp~~G~l~~~~~~i~~~~~~~ 233 (363)
T TIGR01437 168 -VEDAAQVAQEH-NLPLIVDAAAEED------LQKYYRL----GADLVIYSGAKAI--EGPTSGLVLGKKKYIEWVKLQS 233 (363)
T ss_pred -HHHHHHHHHHc-CCeEEEECCCCCc------hHHHHHc----CCCEEEEeCCccc--CCCceEEEEEcHHHHHHHHhcc
Confidence 78899999999 9999999999721 0111122 2347889999976 6889999999988888764322
Q ss_pred hccc--CCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC--cce--E-EeEecCCccC
Q 012095 329 SQFT--SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ--GAF--Y-LFIDFSTYYG 401 (471)
Q Consensus 329 ~~~~--~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~--~g~--~-~~~~~~~~~~ 401 (471)
.... .........+..++++. ..++..+..+.+.++++.+.+.|.+++|+.+..+. .+. + .-+.+...
T Consensus 234 ~~~~~~~~~~~~~~~gl~aAl~~---~~~~~~~~~~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~-- 308 (363)
T TIGR01437 234 KGIGRAMKVGKENILGLTAALEQ---YLSTGKESGAEMVAKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDES-- 308 (363)
T ss_pred CCCcceeccCHHHHHHHHHHHHH---HHccCcccHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEecc--
Confidence 1110 01111222333334432 11222234445556777899999999998876322 111 1 11222210
Q ss_pred CcccCCCCCCCHHHHHHHHHHcCC--EEEECCCCCCCCCcEEEEeec-CHHHHHHHHHHHHHH
Q 012095 402 SEAEGFGKIENSESLCRYLLDKAQ--VALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKG 461 (471)
Q Consensus 402 ~~~~~~~~~~~~~~l~~~Ll~~~g--V~v~pg~~f~~~~~iRis~~~-~~e~i~~~~~~l~~~ 461 (471)
..+ .+..++.+.|.++ + |.+++ .|...+.+|+++.. +++|++.++++|.++
T Consensus 309 --~~g----~~~~~l~~~L~~~-~~~I~~r~--~~~~~~~~~l~~~~~~~~e~~~~~~~l~~~ 362 (363)
T TIGR01437 309 --ELG----MTAADVVQALRQG-EPAIYTRG--YKANEGIIEIDPRSVTGGQLDIIVERIREI 362 (363)
T ss_pred --CCC----CCHHHHHHHHhcC-CCCEEEee--eeecCCeEEEEeecCCHHHHHHHHHHHHHh
Confidence 001 2678999987653 5 66655 46677899999988 889999999999875
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-26 Score=230.33 Aligned_cols=319 Identities=16% Similarity=0.150 Sum_probs=227.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCCC-----CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhc---CCCC
Q 012095 109 TPVLIAEAGINAIREGFTRYTPNAG-----TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC---SPGD 180 (471)
Q Consensus 109 ~p~~v~~a~~~~~~~~~~~Y~~~~G-----~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~---~~gd 180 (471)
+|+.+.+++.+.+.+ ...|+.... ..+..+.+.+.+.+.+|. ++++|++|+|+++++..++..++ .+||
T Consensus 11 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~--~~~~i~~t~~~t~a~~~al~~~~~~~~~~~ 87 (379)
T TIGR03402 11 VDPEVLEAMLPYFTE-YFGNPSSMHSFGGEVGKAVEEAREQVAKLLGA--EPDEIIFTSGGTESDNTAIKSALAAQPEKR 87 (379)
T ss_pred CCHHHHHHHHHHHHh-cCCCCCcccHHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEeCcHHHHHHHHHHHHHHhcCCCC
Confidence 467889998887754 223322111 122333444555555664 57899999999999998888764 4568
Q ss_pred eEEEcCCCCCChHHH---HHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHH
Q 012095 181 EVIIPAPFWVSYPEM---ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV 257 (471)
Q Consensus 181 ~Vlv~~p~y~~~~~~---~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~ 257 (471)
.|++....|+++... ++..|++++.+|.+. ++.+|++++++.++++++++++++++||||.+++ +++|.++|
T Consensus 88 ~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~---~~~I~~l~ 162 (379)
T TIGR03402 88 HIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDE--EGRLDLEELRAAITDDTALVSVMWANNETGTIFP---IEEIGEIA 162 (379)
T ss_pred eEEEcccccHHHHHHHHHHHHcCCEEEEEccCC--CCcCCHHHHHHhcCCCcEEEEEEcccCCeeeccc---HHHHHHHH
Confidence 999999888776543 344699999999863 3568999999999989999999999999999999 77899999
Q ss_pred HhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHH-H------Hhc
Q 012095 258 AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK-I------QSQ 330 (471)
Q Consensus 258 ~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~-~------~~~ 330 (471)
++| |+++++|+++.. +.....+.. .+-.+++.|.+|.+|.+| +|+++.+++.. +.. . ...
T Consensus 163 ~~~-g~~vivD~~~~~----g~~~~~~~~----~~~D~~~~s~~K~~gp~G--~g~l~v~~~~~--~~p~~~g~~~~~~~ 229 (379)
T TIGR03402 163 KER-GALFHTDAVQAV----GKIPIDLKE----MNIDMLSLSGHKLHGPKG--VGALYIRKGTR--FRPLLRGGHQERGR 229 (379)
T ss_pred HHc-CCEEEEECcccc----cccccCccc----CCCCEEEEcHHHcCCCCc--eEEEEECCCCC--CCCcccCCccCCCc
Confidence 999 999999999974 222222222 233477778889777556 88887765431 110 0 001
Q ss_pred ccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC-CCCCeeeCCC----cc-eEEeEecCCccCCcc
Q 012095 331 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQ----GA-FYLFIDFSTYYGSEA 404 (471)
Q Consensus 331 ~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~g~~~~~p~----~g-~~~~~~~~~~~~~~~ 404 (471)
...+++.....++.++++. ..+++++..+++++.++++.+.|.+ ++++.+..+. .+ +.+|+ +..
T Consensus 230 ~~gt~~~~~~~~l~~al~~---~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----- 299 (379)
T TIGR03402 230 RAGTENVPGIVGLGKAAEL---ATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISF--EYI----- 299 (379)
T ss_pred CCCCccHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEe--cCC-----
Confidence 1234566666666777765 3567888888999999999999985 8888776542 12 22333 321
Q ss_pred cCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------------------CCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 012095 405 EGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------------------DTCIRISYAA--SLTTLQAAVERIKKGLL 463 (471)
Q Consensus 405 ~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~-------------------~~~iRis~~~--~~e~i~~~~~~l~~~l~ 463 (471)
+..++...| +++||.+..|..|.. .+.+|+|++. +++||+++++.|+++++
T Consensus 300 -------~~~~~~~~l-~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~ 371 (379)
T TIGR03402 300 -------EGEAILLLL-DMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIA 371 (379)
T ss_pred -------CHHHHHHhh-ccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 567888866 456999999876532 2689999997 88999999999999987
Q ss_pred hhC
Q 012095 464 TLR 466 (471)
Q Consensus 464 ~~~ 466 (471)
+++
T Consensus 372 ~~~ 374 (379)
T TIGR03402 372 RLR 374 (379)
T ss_pred HHH
Confidence 754
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-25 Score=222.34 Aligned_cols=331 Identities=22% Similarity=0.257 Sum_probs=248.7
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHcC--CC---CCCCCC----CCHHHHHHHHHHHHHHhCCCCC-CCcEEEeCC
Q 012095 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREG--FT---RYTPNA----GTLELRSAICHKLKEENGLSYT-PDQILVSNG 163 (471)
Q Consensus 94 g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~--~~---~Y~~~~----G~~~lr~~ia~~~~~~~g~~~~-~~~i~it~G 163 (471)
+++++.|....... .|..+.+++.+..... .. .|.... -+.+.|+.+++++ | .+ .++|++|.|
T Consensus 20 ~~~~vylD~aa~~~-~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~----~--a~~~~eIvft~~ 92 (405)
T COG0520 20 GKPLVYLDNAATSQ-KPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFL----N--ADSSDEIVFTRG 92 (405)
T ss_pred CCCeEEecCccccc-CCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHh----C--CCCCCeEEEeCC
Confidence 56788888887665 6888999998876431 11 222222 2344555555555 4 34 489999999
Q ss_pred hHHHHHHHHHHh---cCCCCeEEEcCCCCCCh----HHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcC
Q 012095 164 AKQSILQAVLAV---CSPGDEVIIPAPFWVSY----PEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCS 236 (471)
Q Consensus 164 ~~~al~~~~~~l---~~~gd~Vlv~~p~y~~~----~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~ 236 (471)
+|++|+.+..++ ..+||+|++.+-.|++. ...++..|++++.+|+++ ++.++.+.++..++++||++.+++
T Consensus 93 tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~--~g~~~~~~~~~~i~~~Tklvais~ 170 (405)
T COG0520 93 TTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDD--DGLLDLDALEKLITPKTKLVALSH 170 (405)
T ss_pred hhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCC--CCCcCHHHHHHhcCCCceEEEEEC
Confidence 999999999998 68999999999888754 355666799999999973 456899999999999999999999
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCc-ccCccchhheeeE
Q 012095 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK-AFAMTGWRLGYIA 315 (471)
Q Consensus 237 p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK-~~g~~G~R~G~v~ 315 (471)
.+|.||.+.| +++|+++|+++ ++++++|.+++. ++....+.. .+..+++.|..| .+|-.| +|.++
T Consensus 171 vSn~tG~~~p---v~~I~~la~~~-ga~v~VDaaq~~----~h~~idv~~----l~~Df~afsgHKwl~gP~G--iGvLy 236 (405)
T COG0520 171 VSNVTGTVNP---VKEIAELAHEH-GALVLVDAAQAA----GHLPIDVQE----LGCDFLAFSGHKWLLGPTG--IGVLY 236 (405)
T ss_pred ccccccccch---HHHHHHHHHHc-CCEEEEECcccc----CccCCCchh----cCCCEEEEcccccccCCCc--eEEEE
Confidence 9999999999 99999999999 999999999875 333333332 355699999999 666336 99999
Q ss_pred cCHHHHHHHHHH----------------------HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHH
Q 012095 316 GPKHFVAACNKI----------------------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 373 (471)
Q Consensus 316 ~~~~~i~~l~~~----------------------~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~ 373 (471)
+++++++.+.-. .+.....++.....++.++++.- .+..++.+.++.++..+++.+
T Consensus 237 ~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~--~~ig~~~i~~~e~~L~~~~~~ 314 (405)
T COG0520 237 VRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYL--LEIGMEAIEAHERELTEYLLE 314 (405)
T ss_pred EchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHH--HHHhHHHHHHHHHHHHHHHHH
Confidence 999999887210 11112234444444445556531 123367788888899999999
Q ss_pred HhcCCCCCeeeCCC----cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--------CCcEE
Q 012095 374 SFGELEGVKMSEPQ----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--------DTCIR 441 (471)
Q Consensus 374 ~L~~~~g~~~~~p~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--------~~~iR 441 (471)
.|+++|+++++.|. ++. +.+.++.. .+.+++..|-++ ||.++.|..+.. +..+|
T Consensus 315 ~L~~~~~v~i~g~~~~~r~~~-vsF~v~~~------------~~~dv~~~L~~~-gI~vr~g~~ca~p~~~~~~~~~~iR 380 (405)
T COG0520 315 GLSELPGVEIYGPPDADRGGI-VSFNVKGI------------HPHDVATLLDEK-GIAVRAGHHCAQPLHRLLGVDATIR 380 (405)
T ss_pred HHhcCCCeEEecCCcccCceE-EEEEeCCC------------CHHHHHHHHHhC-CeEEEeccccccHHHHhcCCCCceE
Confidence 99999999998764 444 55566643 688999987766 799999976642 35699
Q ss_pred EEeec--CHHHHHHHHHHHHHHHH
Q 012095 442 ISYAA--SLTTLQAAVERIKKGLL 463 (471)
Q Consensus 442 is~~~--~~e~i~~~~~~l~~~l~ 463 (471)
+|++. ++||++++++.|+++.+
T Consensus 381 ~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 381 ASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred EEEeecCCHHHHHHHHHHHHHHhh
Confidence 99997 99999999999998764
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=231.08 Aligned_cols=220 Identities=14% Similarity=0.191 Sum_probs=171.1
Q ss_pred CC--CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH----HHHcCC
Q 012095 128 YT--PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADA 201 (471)
Q Consensus 128 Y~--~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~G~ 201 (471)
|+ +.++..+|+++++++++ .+++++++|+++++..++.+++++||+|+++.|.|..+... ++..|+
T Consensus 58 Y~r~~~p~~~~Le~~iA~~~g--------~~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~ 129 (400)
T PRK06234 58 YSRLGNPTSTEVENKLALLEG--------GEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGV 129 (400)
T ss_pred ccCCCCccHHHHHHHHHHHhC--------CCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCe
Confidence 55 77889999999999963 24678889999999999999999999999999999876543 477899
Q ss_pred EEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhC-CCeEEEEccCCCccccCCCC
Q 012095 202 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH-PRLLVLSDEIYEHIIYAPAT 280 (471)
Q Consensus 202 ~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~-~~~~ii~De~y~~~~~~~~~ 280 (471)
+++.++.. |++++++++++++++|++++|+||||.+.+ +++|.++|+++ +++++|+|++|....+..
T Consensus 130 ~v~~vd~~-------d~e~l~~~i~~~tklI~iesP~NPtG~v~d---l~~I~~la~~~~~~i~livDea~~~~~~~~-- 197 (400)
T PRK06234 130 EVTFVDTS-------NLEEVRNALKANTKVVYLETPANPTLKVTD---IKAISNIAHENNKECLVFVDNTFCTPYIQR-- 197 (400)
T ss_pred EEEEECCC-------CHHHHHHHhccCCeEEEEECCCCCCCCcCC---HHHHHHHHHhcCCCCEEEEECCCCchhcCC--
Confidence 99998752 899999999989999999999999999999 88889999985 379999999998754321
Q ss_pred ccccccCCCCCCceEEEecCCcccCccchhh-eeeEcCHHHHHHHHHH--HhcccCCCChHHHHHHHHHHhccCCChHHH
Q 012095 281 HTSFASLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVAACNKI--QSQFTSGASSISQKAGVAALGLGYAGGEVV 357 (471)
Q Consensus 281 ~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~-G~v~~~~~~i~~l~~~--~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~ 357 (471)
++ . .+..+++.|+||.++++|+|+ ||+++++++++.++.. ...++.+.+++....+...|+. +
T Consensus 198 --~l-~----~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~l~t-------l 263 (400)
T PRK06234 198 --PL-Q----LGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIKDMTGSVIGPFEAFLIIRGMKT-------L 263 (400)
T ss_pred --ch-h----hCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCc-------H
Confidence 11 1 244599999999998889886 9999999998887653 3334555666665544444432 3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCC
Q 012095 358 SKMVKAFRERRDFLVKSFGELEGV 381 (471)
Q Consensus 358 ~~~~~~~~~~r~~l~~~L~~~~g~ 381 (471)
....++..++...+.+.|++.|.+
T Consensus 264 ~~r~~~~~~na~~~a~~L~~~~~V 287 (400)
T PRK06234 264 QIRMEKHCKNAMKVAKFLESHPAV 287 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCe
Confidence 344455556777777788776544
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=232.07 Aligned_cols=330 Identities=15% Similarity=0.154 Sum_probs=228.6
Q ss_pred cCCCeEEcCCCCCCCCC---hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGEPDFDT---PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~~~~~~---p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.+||+..|...... ++.+.+++.+++.+..... +. -..+....+++.+.+..| .+.+++++++++++.
T Consensus 39 ~g~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~~~~~~-~~-~~~~~~~~l~~~l~~~~~----~~~~~~~~SGs~A~e 112 (401)
T PRK00854 39 DGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLTS-RA-FRNDQLAPLYEELAALTG----SHKVLPMNSGAEAVE 112 (401)
T ss_pred CCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccc-cc-cCCHHHHHHHHHHHhhCC----CCEEEEeCCcHHHHH
Confidence 57789999888654443 7889999999887632211 11 112344445555544444 358999999999999
Q ss_pred HHHHHhcC---------CC-CeEEEcCCCCCChHHHHHHcCC-------------EEEEecCCCCCCCcCCHHHHHhhhc
Q 012095 170 QAVLAVCS---------PG-DEVIIPAPFWVSYPEMARIADA-------------TPVILPTRISENFLLDPKVLESKLT 226 (471)
Q Consensus 170 ~~~~~l~~---------~g-d~Vlv~~p~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~ld~e~l~~~l~ 226 (471)
.+++++.. +| +.|++..-+|++....+...+. .+..++. .|++.+++.+.
T Consensus 113 ~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~i~ 185 (401)
T PRK00854 113 TAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPF-------GDAEALEAAIT 185 (401)
T ss_pred HHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCC-------CCHHHHHHHhC
Confidence 99988742 24 6788887777765433332222 1222221 38999999998
Q ss_pred cCCcEEEEcCCCCCcccCCCH-HHHHHHHHHHHhCCCeEEEEccCCCccccCCCCcc-ccccCCCCCCceEEEecCCccc
Q 012095 227 EKSRLLILCSPSNPTGSVYPK-NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT-SFASLPGMWERTLTVNGFSKAF 304 (471)
Q Consensus 227 ~~~~~i~i~~p~NPtG~~~~~-~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~~~i~~~S~SK~~ 304 (471)
+++++|++++|+||+|.++++ +++++|.++|++| ++++|+||+|.++.+.|.... ...... .+ +++ +||.+
T Consensus 186 ~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~-gi~lI~DEv~~g~g~~g~~~~~~~~g~~--~D--~~~--~~K~l 258 (401)
T PRK00854 186 PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTAN-NVTLILDEIQTGLGRTGKLLAEEHEGIE--AD--VTL--IGKAL 258 (401)
T ss_pred CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhCCCCCchHhHHhhcCCC--CC--EEE--ecccc
Confidence 899999999999999999974 5699999999999 999999999987644432110 011111 12 222 47999
Q ss_pred CccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCC--Ce
Q 012095 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG--VK 382 (471)
Q Consensus 305 g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g--~~ 382 (471)
+-..||+||+++++++++.+.......+++.+++.+.++.++|+. .++ ....+.++++.+++.+.|+++.. +.
T Consensus 259 ~gg~~~ig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~---l~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~ 333 (401)
T PRK00854 259 SGGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARAALKV---LTE--EGMIENAAEMGAYFLEGLRSIRSNIVR 333 (401)
T ss_pred cCCccCeEEEEEcHHHHhcccCCCCCCCCCcCHHHHHHHHHHHHH---HHH--cCHHHHHHHHHHHHHHHHHhhccCceE
Confidence 733379999999999999876544555667899999999999874 111 33567888888999999887621 12
Q ss_pred eeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHHHH
Q 012095 383 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERIKK 460 (471)
Q Consensus 383 ~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~i~~~~~~l~~ 460 (471)
...+.|.++.+...++. .+..++++.|+++ ||.+.+.. .+++|+++. .++++|++++++|++
T Consensus 334 ~~~g~g~~~~i~~~~~~-----------~~~~~~~~~L~~~-GV~v~~~~----~~~lR~~p~~~~t~e~i~~~i~~l~~ 397 (401)
T PRK00854 334 EVRGRGLMLAVELEPEA-----------GGARQYCEALKER-GLLAKDTH----DHTIRLAPPLVITREQVDWALEQIAK 397 (401)
T ss_pred EEeccceEEEEEEecCc-----------hhHHHHHHHHHHC-CeEEecCC----CCEEEEeCCcccCHHHHHHHHHHHHH
Confidence 23455666554332321 1467899998876 99987632 369999975 499999999999998
Q ss_pred HHH
Q 012095 461 GLL 463 (471)
Q Consensus 461 ~l~ 463 (471)
++.
T Consensus 398 ~l~ 400 (401)
T PRK00854 398 VLA 400 (401)
T ss_pred Hhh
Confidence 864
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=227.13 Aligned_cols=342 Identities=14% Similarity=0.152 Sum_probs=236.8
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.+||+..|. ..++. ++.+.+|+.+++.+.. .++. ....+....+++.+.+..+ .+.+++++++++++.
T Consensus 37 dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~-~~~~-~~~~~~~~~la~~l~~~~~----~~~v~~~~sGseA~e 110 (406)
T PRK12381 37 QGKEYIDFAGGIAVNALGHAHPALREALNEQASKFW-HTGN-GYTNEPVLRLAKKLIDATF----ADRVFFCNSGAEANE 110 (406)
T ss_pred CCCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhcc-cccC-ccCCHHHHHHHHHHHhhCC----CCeEEEcCCcHHHHH
Confidence 678899998864 33443 7889999999886522 1211 1223444556666654433 369999999999999
Q ss_pred HHHHHhc--------CCCCeEEEcCCCCCChHHHHHHcCCEEEE----ecCCCC--CCCcCCHHHHHhhhccCCcEEEEc
Q 012095 170 QAVLAVC--------SPGDEVIIPAPFWVSYPEMARIADATPVI----LPTRIS--ENFLLDPKVLESKLTEKSRLLILC 235 (471)
Q Consensus 170 ~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~----v~~~~~--~~~~ld~e~l~~~l~~~~~~i~i~ 235 (471)
.+++... ...+.|+..+.+|++....+...+..... .++.+. ...-.|++.+++.+.+++++|++
T Consensus 111 ~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aavii- 189 (406)
T PRK12381 111 AALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALIDDQTCAVIV- 189 (406)
T ss_pred HHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhccCCeeEEEE-
Confidence 9988752 13467999999999877544433332110 011110 00113889999999877777777
Q ss_pred CCCCCcccCC--CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhhee
Q 012095 236 SPSNPTGSVY--PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 313 (471)
Q Consensus 236 ~p~NPtG~~~--~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~ 313 (471)
+|.|++|-++ +.+.+++|.++|++| ++++|+||+|.++.+.|.. ..........| +.||||.++ +|+|+||
T Consensus 190 EPv~~~gg~~~~~~~~l~~l~~l~~~~-~~llI~DEv~tG~gr~G~~-~~~~~~~v~pD----i~t~sK~l~-gG~~ig~ 262 (406)
T PRK12381 190 EPIQGEGGVIPADKAFLQGLRELCDRH-NALLIFDEVQTGVGRTGEL-YAYMHYGVTPD----VLTTAKALG-GGFPIGA 262 (406)
T ss_pred eCCcCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEcchhhCCCCCcch-hhhHhhCCCCC----EEEehhhhh-CCCceEE
Confidence 6999998654 789999999999999 9999999999887555532 11111111112 468999998 9999999
Q ss_pred eEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCC-CCe--eeCCCcce
Q 012095 314 IAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE-GVK--MSEPQGAF 390 (471)
Q Consensus 314 v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-g~~--~~~p~~g~ 390 (471)
+++++++++.+.......+++.+++.+.++.++|+.- ...+++++++++.+++.+.|+++. ... ......|+
T Consensus 263 ~~~~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l-----~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~Gl 337 (406)
T PRK12381 263 MLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELI-----NTPEMLNGVKQRHDWFVERLNTINARYGLFSEIRGLGL 337 (406)
T ss_pred EEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH-----hhccHHHHHHHHHHHHHHHHHHHHhhCCCEEEEecCeE
Confidence 9999999998876555566788999999999988741 123567888888888888887751 121 11224467
Q ss_pred EEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhCC
Q 012095 391 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 467 (471)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~~~ 467 (471)
++++.++.... .....+.+.|+++ ||.+.++. ++++|++++. ++++|++++++|.++++++..
T Consensus 338 ~~~~~l~~~~~---------~~~~~~~~~l~~~-Gv~v~~~g----~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~~ 402 (406)
T PRK12381 338 LIGCVLNAEYA---------GKAKQISQEAAKA-GVMVLIAG----PNVVRFAPALNISEEEITTGLDRFARACERFVS 402 (406)
T ss_pred EEEEEecCchh---------hHHHHHHHHHHHC-CcEEeeCC----CCEEEEeCCccCCHHHHHHHHHHHHHHHHHHHh
Confidence 77887764210 1346777777665 99997642 4689998874 899999999999999987643
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=225.61 Aligned_cols=332 Identities=13% Similarity=0.130 Sum_probs=238.6
Q ss_pred cCCCeEEcCCCC--CCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~i~it~G~~~al~ 169 (471)
.|+.+||+..|. ..++..+.+.+++.+++... ..+ +..-..++++.+++.+.. .++ .+++++++++++.
T Consensus 27 dg~~~lD~~s~~~~~~lG~~p~v~~a~~~~~~~~-~~~-~~~~~~~~~~~la~~l~~------~~~~~~~~~~SGseA~~ 98 (375)
T PRK04260 27 DGKKYLDFSSGIGVTNLGFHPQVQQALQKQAGLI-WHS-PNLYLNSLQEEVAQKLIG------DKDYLAFFCNSGAEANE 98 (375)
T ss_pred CCCEEEECCCCcccccCCCCHHHHHHHHHHHHhc-Ccc-cCccCCHHHHHHHHHHhc------CcCCEEEEcCccHHHHH
Confidence 577899998874 45566778999999988652 223 333456788889887642 123 4688999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCChH-HHHHHcCCEEEE------ecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCC
Q 012095 170 QAVLAVC--SPGDEVIIPAPFWVSYP-EMARIADATPVI------LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNP 240 (471)
Q Consensus 170 ~~~~~l~--~~gd~Vlv~~p~y~~~~-~~~~~~G~~~~~------v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NP 240 (471)
.+++... ..++.|++.+.+|++.. ..+...|.+... ++......+ .|++.+++.+.+++.+|++..++|+
T Consensus 99 ~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dl~~l~~~l~~~~a~vi~e~v~~~ 177 (375)
T PRK04260 99 AAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIF-NDLNSVKALVNKNTAAVMLELVQGE 177 (375)
T ss_pred HHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCC-CCHHHHHHhcCCCeEEEEECCeECC
Confidence 8887652 34578888888887643 333333322110 000000011 3899999988777888888999999
Q ss_pred cccCC-CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccc-cccCCCCCCceEEEecCCcccCccchhheeeEcCH
Q 012095 241 TGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS-FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 318 (471)
Q Consensus 241 tG~~~-~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~ 318 (471)
+|... +.+.+++|.++|+++ ++++|+||+|.++...+..... ...+. .+ +.||||.++ +|+|+||+++++
T Consensus 178 ~G~~~~~~~~l~~~~~l~~~~-~~~~i~De~~~g~g~~g~~~~~~~~~~~--pd----i~t~sK~l~-~G~~ig~~~~~~ 249 (375)
T PRK04260 178 SGVLPADKDFVKALADYCQET-GILLIVDEVQTGMGRTGKLYAFEHYGIE--PD----IFTLAKGLA-NGVPVGAMLAKS 249 (375)
T ss_pred CCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcccchhhhHhhCCC--CC----EEEeccccc-CCcceEEEEEcH
Confidence 99864 567899999999999 9999999999876443321110 12222 12 448999998 899999999999
Q ss_pred HHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCC
Q 012095 319 HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFST 398 (471)
Q Consensus 319 ~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~ 398 (471)
++++.+.......+++.+++.+.++.++|+.... +++++++++..+..++.+.+.+.+.+.+... +..|+++|++++.
T Consensus 250 ~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~ 327 (375)
T PRK04260 250 SLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLT-AGFLEQALENGNYLQEQLQKALQDKETVTTV-RGLGYMIGIETTA 327 (375)
T ss_pred HHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHhhCCCeeEE-eccceEEEEEecC
Confidence 9988876544555677899999999999976322 4667888888888888888888776433333 2378889998842
Q ss_pred ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHH
Q 012095 399 YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKG 461 (471)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~ 461 (471)
+..++.+.|.++ ||.+.|+. .+.+|+++.. +++++++++++|+++
T Consensus 328 -------------~~~~~~~~l~~~-Gi~v~~~~----~~~lR~~~~~~~t~~~i~~~l~~l~~~ 374 (375)
T PRK04260 328 -------------DLSQLVEAARDK-GLIVLTAG----TNVIRLLPPLTLTKEEIEQGIAILSEV 374 (375)
T ss_pred -------------cHHHHHHHHHhC-CCEEecCC----CCEEEEcCCCccCHHHHHHHHHHHHHh
Confidence 567889888875 99998753 3789999954 899999999999875
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-25 Score=225.28 Aligned_cols=336 Identities=16% Similarity=0.123 Sum_probs=225.5
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCC-CCCCC---CCC---CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHH
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGF-TRYTP---NAG---TLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~-~~Y~~---~~G---~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~a 167 (471)
++.|+|..|++. +|+.+++++...+.... .+++. ..| ...+.+...+.+++.+|. +..+|++++| +++
T Consensus 25 ~~~~~l~~~~n~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~i~~~sg-t~a 99 (416)
T PRK00011 25 EEHIELIASENF--VSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGA--EYANVQPHSG-SQA 99 (416)
T ss_pred hcCeeeecccCc--CCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCC--CceeeecCCc-hHH
Confidence 568999999977 57888888876643211 11110 012 222323234466777774 4456766665 668
Q ss_pred HHHHHHHhcCCCCeEEEcCCCCCChHH-----HHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc-CCcEEEEcCCCCCc
Q 012095 168 ILQAVLAVCSPGDEVIIPAPFWVSYPE-----MARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPT 241 (471)
Q Consensus 168 l~~~~~~l~~~gd~Vlv~~p~y~~~~~-----~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~-~~~~i~i~~p~NPt 241 (471)
+..++.++++|||+|+++.|+|.++.. .+...|++++.++++. +++.+|++++++++++ ++++|++++++|
T Consensus 100 l~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~k~v~~~~~~~-- 176 (416)
T PRK00011 100 NAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDE-ETGLIDYDEVEKLALEHKPKLIIAGASAY-- 176 (416)
T ss_pred HHHHHHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCcCc-ccCCcCHHHHHHHHHhcCCCEEEECCCcC--
Confidence 888999999999999999999986532 1234467888888764 3467999999999975 799998876655
Q ss_pred ccCCCHHHHHHHHHHHHhCCCeEEEEccCCCc-cccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcC-HH
Q 012095 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KH 319 (471)
Q Consensus 242 G~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~-~~ 319 (471)
|...+ +++|.++|++| ++++|+|++|.. +.+.+. .+.. +. ...+++.||||.+ +|+|.||++++ ++
T Consensus 177 ~~~~~---~~~I~~la~~~-~~~livD~a~~~g~~~~g~-~~~~--~~---~~di~~~S~~K~l--~g~~gg~i~~~~~~ 244 (416)
T PRK00011 177 SRPID---FKRFREIADEV-GAYLMVDMAHIAGLVAAGV-HPSP--VP---HADVVTTTTHKTL--RGPRGGLILTNDEE 244 (416)
T ss_pred CCccC---HHHHHHHHHHc-CCEEEEECcchhcccccCc-cCCC--CC---CCcEEEecCCcCC--CCCCceEEEeCCHH
Confidence 45566 89999999999 999999999863 222221 1111 11 2347899999976 68899999996 68
Q ss_pred HHHHHHHHHhcccCCCChH-HHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC-CCcceEEeEecC
Q 012095 320 FVAACNKIQSQFTSGASSI-SQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLFIDFS 397 (471)
Q Consensus 320 ~i~~l~~~~~~~~~~~~~~-~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~-p~~g~~~~~~~~ 397 (471)
+++.+.+.......+.+.. .+.++..++... ..+++++.+++++++++++.+.|+++ |+++.. ...++++|+.++
T Consensus 245 ~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~i~~~ 321 (416)
T PRK00011 245 LAKKINSAVFPGIQGGPLMHVIAAKAVAFKEA--LEPEFKEYAQQVVKNAKALAEALAER-GFRVVSGGTDNHLVLVDLR 321 (416)
T ss_pred HHHHHHHHhCccccCCccHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHhC-CCeeeecCCCCeEEEEeCc
Confidence 9998887665444333322 333322233210 13457888899999999999999987 887653 123477898885
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC-CC-----CCCCcEEEEe------ecCHHHHHHHHHHHHHHHHh
Q 012095 398 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD-AF-----GDDTCIRISY------AASLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~-~f-----~~~~~iRis~------~~~~e~i~~~~~~l~~~l~~ 464 (471)
+. + .+..++.+.|. +.||.+..+. .+ ..+..+|++. +.++++++++++.|++++..
T Consensus 322 ~~-~---------~~~~~~~~~L~-~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~~ 389 (416)
T PRK00011 322 SK-G---------LTGKEAEAALE-EANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLDN 389 (416)
T ss_pred cc-C---------CCHHHHHHHHH-HcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHHhc
Confidence 32 0 14567777665 4599997432 11 1245799964 22689999999999988764
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-26 Score=216.00 Aligned_cols=316 Identities=19% Similarity=0.268 Sum_probs=206.9
Q ss_pred CCCC-CCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH-HH-HHHh----cC---C-----CCeEEEcCCCC
Q 012095 125 FTRY-TPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL-QA-VLAV----CS---P-----GDEVIIPAPFW 189 (471)
Q Consensus 125 ~~~Y-~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~-~~-~~~l----~~---~-----gd~Vlv~~p~y 189 (471)
..+| +...|++++|+-+++.+. +.++||++..+++-.|. -+ .+++ .+ | .-..|+|.|.|
T Consensus 61 ~RNY~G~l~Gipe~r~l~a~llg------v~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGY 134 (425)
T PF12897_consen 61 CRNYPGGLDGIPEARELFAELLG------VPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGY 134 (425)
T ss_dssp TTSS-S-SS--HHHHHHHHHHHT------S-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--
T ss_pred ccCCCCccCChHHHHHHHHHHhC------CCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCc
Confidence 4689 889999999999999984 68899998776664443 22 2222 11 1 12589999999
Q ss_pred CChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc--cCCcEEE-EcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEE
Q 012095 190 VSYPEMARIADATPVILPTRISENFLLDPKVLESKLT--EKSRLLI-LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 266 (471)
Q Consensus 190 ~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~--~~~~~i~-i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii 266 (471)
.-+..+++..|.+.+.||+.+++ +|.|.+++.+. +..|.|| ++.-+||||.++|.+..++++.+--..+|+.|+
T Consensus 135 DRHFai~E~~Giemi~VpM~~dG---PDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~ 211 (425)
T PF12897_consen 135 DRHFAITEHFGIEMIPVPMTEDG---PDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIF 211 (425)
T ss_dssp HHHHHHHHHCT-EEEEEEEETTE---E-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEE
T ss_pred hHHHHHHHhhCcEEEecCCCCCC---CCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEE
Confidence 99999999999999999998654 89999999985 4567787 566699999999999999999984433599999
Q ss_pred EccCCCcccc-CCCCcc---cccc---CCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHH
Q 012095 267 SDEIYEHIIY-APATHT---SFAS---LPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSIS 339 (471)
Q Consensus 267 ~De~y~~~~~-~~~~~~---~~~~---~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~ 339 (471)
-|++|..-.+ +..... .+.. -.+..++++.+.|.||.- .+|..++++.++++-++.+.+.....+.++.-+.
T Consensus 212 WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKIT-f~GaGva~~aaS~~Nl~~~~~~~~~~tIgpdKvN 290 (425)
T PF12897_consen 212 WDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKIT-FPGAGVAFFAASEANLAWIKKHLSVQTIGPDKVN 290 (425)
T ss_dssp EE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS--TTSS-EEEEE-HHHHHHHHHHHHHH-S---HHH
T ss_pred eecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccc-cCCcceeeeecCHHHHHHHHHHhcCceeCccHHH
Confidence 9999985444 222111 2222 135578999999999997 6999999999999999999988888888999999
Q ss_pred HHHHHHHHhccC-CChHHHHHHHHHHHHHHHHHHHHhcC-CC---C-CeeeCCCcceEEeEecCCccCCcccCCCCCCCH
Q 012095 340 QKAGVAALGLGY-AGGEVVSKMVKAFRERRDFLVKSFGE-LE---G-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 413 (471)
Q Consensus 340 q~aa~~~L~~~~-~~~~~~~~~~~~~~~~r~~l~~~L~~-~~---g-~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~ 413 (471)
|..-...+.+.. ....|+++..+.++-+.+.+.+.|++ +. | .+|..|.||+|++++..+. .+
T Consensus 291 QLRHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~G------------~A 358 (425)
T PF12897_consen 291 QLRHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLDG------------TA 358 (425)
T ss_dssp HHHHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEESTT-------------H
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCCC------------hH
Confidence 999888888632 12355666666666666666666654 32 3 5899999999999999874 57
Q ss_pred HHHHHHHHHcCCEEEEC-CCCCC--C---CCcEEEEeec-CHHHHHHHHHHHHHHHH
Q 012095 414 ESLCRYLLDKAQVALVP-GDAFG--D---DTCIRISYAA-SLTTLQAAVERIKKGLL 463 (471)
Q Consensus 414 ~~l~~~Ll~~~gV~v~p-g~~f~--~---~~~iRis~~~-~~e~i~~~~~~l~~~l~ 463 (471)
..+++ |.++.||.++| |..|- . +..|||+.+. +.|+++.+++.+.-+++
T Consensus 359 krvV~-lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~cv~ 414 (425)
T PF12897_consen 359 KRVVE-LAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATCVK 414 (425)
T ss_dssp HHHHH-HHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 77777 45667999999 66552 1 3689999998 88999999999987765
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-24 Score=219.25 Aligned_cols=314 Identities=16% Similarity=0.183 Sum_probs=221.2
Q ss_pred HHHHHHHHHHHHcC--CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhc------CCCCeE
Q 012095 111 VLIAEAGINAIREG--FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC------SPGDEV 182 (471)
Q Consensus 111 ~~v~~a~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~------~~gd~V 182 (471)
+.+.+++...+... ...+ ..|..++.+.+.+.+++.+|. +++++++++|+++++..++.++. .+||+|
T Consensus 34 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~~~g~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~v 109 (373)
T TIGR03812 34 PIAVKAYDMFIETNLGDPGL--FPGTKKIEEEVVGSLGNLLHL--PDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNI 109 (373)
T ss_pred HHHHHHHHHHhhcCCCCccc--CccHHHHHHHHHHHHHHHhCC--CCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEE
Confidence 44456665554332 1121 135566667777777777784 56788999999999988776654 467999
Q ss_pred EEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC
Q 012095 183 IIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 262 (471)
Q Consensus 183 lv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~ 262 (471)
++++++|.++...++..|++++.++.+ .++.+|++++++++++++..+++.+|+||||...+ +++|.++|+++ +
T Consensus 110 l~~~~~h~~~~~~~~~~G~~~~~v~~~--~~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~---~~~i~~l~~~~-~ 183 (373)
T TIGR03812 110 IVPESAHFSFEKAAEMLGLELRYAPLD--EDYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDD---IEELSKIALEN-G 183 (373)
T ss_pred EECCcchHHHHHHHHHcCCeEEEEeeC--CCCCcCHHHHHHHHhhCcEEEEEECCCCCCCccCC---HHHHHHHHHHc-C
Confidence 999999999999999999999999986 35678999999999877765555558999999998 88999999999 9
Q ss_pred eEEEEccCCCccccC--C--CCccccccCCCCCCceEEEecCCcccCccchhheeeE-cCHHHHHHHHHHHhccc-----
Q 012095 263 LLVLSDEIYEHIIYA--P--ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA-GPKHFVAACNKIQSQFT----- 332 (471)
Q Consensus 263 ~~ii~De~y~~~~~~--~--~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~-~~~~~i~~l~~~~~~~~----- 332 (471)
+++++|++|..+... . ..... ..+.. .+-..+..|.+| +++++.|.|+++ .++++++.+.. ..++.
T Consensus 184 ~~livD~a~~~~~~~~~~~~~~~~~-~d~~~-~~~d~~~~s~~K-~~~~~~~~G~~~~~~~~~~~~l~~-~~~~~~~~~~ 259 (373)
T TIGR03812 184 IYLHVDAAFGGFVIPFLKKGYNPPP-FDFSL-PGVQSITIDPHK-MGLSPIPAGGILFRSKSYLKYLSV-DAPYLTVKKQ 259 (373)
T ss_pred CeEEEEcCchhHHHHHHhcCCCCCC-ccccC-CCCCEEEECccc-cCCCcCCceEEEEeCHHHHhhhcc-cCcccCCCCC
Confidence 999999999865321 0 00000 01100 111234456779 556778888665 67888877642 11221
Q ss_pred ----CCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCe-eeCCCcceEEeEecCCccCCcccCC
Q 012095 333 ----SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFSTYYGSEAEGF 407 (471)
Q Consensus 333 ----~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~-~~~p~~g~~~~~~~~~~~~~~~~~~ 407 (471)
.+.+.....++.++|+.- .+..+++..++..++++++.+.|+++ |+. +..|..++ +.+.++
T Consensus 260 ~~~~gt~~~~~~~~~~~~l~~l--~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~-v~~~~~---------- 325 (373)
T TIGR03812 260 ATITGTRSGASAAATYAVIKYL--GREGYRKIVAECMENTRYLVEELKKI-GFEPVIEPVLNI-VAFEVD---------- 325 (373)
T ss_pred cceEeechhHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEcCCCceE-EEEEeC----------
Confidence 123344555566666531 25667888899999999999999998 554 44555554 556664
Q ss_pred CCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHH
Q 012095 408 GKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKK 460 (471)
Q Consensus 408 ~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~ 460 (471)
+..++.++|.++ ||.+.++. .++++|+++.. ++++++++++.|++
T Consensus 326 ----~~~~v~~~L~~~-gi~v~~~~---~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 326 ----DPEEVRKKLRDR-GWYVSVTR---CPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred ----CHHHHHHHHHHC-CceeccCC---CCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 345788888776 99987753 35789999985 88999999999875
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=205.20 Aligned_cols=352 Identities=15% Similarity=0.177 Sum_probs=261.3
Q ss_pred hcCCCeEEcCCCCC--CCCCh---HHHHHHHHHHHHc--CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcE--EEeC
Q 012095 92 QAGVSVIRLAAGEP--DFDTP---VLIAEAGINAIRE--GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQI--LVSN 162 (471)
Q Consensus 92 ~~g~~~i~l~~g~~--~~~~p---~~v~~a~~~~~~~--~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i--~it~ 162 (471)
+..+..++|+.|.- +-..| |.+.++-.+.-.+ -.+.|.|..|.+.++++.++.+-......+..+++ +-+-
T Consensus 27 d~~p~KvnL~igAYRtd~g~PWvLPvVk~~e~~i~~d~s~NHEYLpi~Gl~~F~~~A~el~lg~~s~a~kE~Rv~~vQsl 106 (410)
T KOG1412|consen 27 DLDPVKVNLGIGAYRTDDGKPWVLPVVKKAEKKIANDQSLNHEYLPILGLPTFTKAATELLLGADSPAIKEDRVFGVQSL 106 (410)
T ss_pred cCCcceeecccceEEcCCCCeeEehhhhhhhhhccCchhccchhccccCchhhhhhhHHHhcCCCchhhhhccccceeec
Confidence 34556789999872 22222 3444433332222 13679999999999999999874332233455554 4566
Q ss_pred ChHHHHHHHHHHhc--CCCCeEEEcCCCCCChHHHHHHcC-CEEEEecCCCCCCCcCCHHHHHhhhccCC-cEEE-Ec-C
Q 012095 163 GAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIAD-ATPVILPTRISENFLLDPKVLESKLTEKS-RLLI-LC-S 236 (471)
Q Consensus 163 G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~G-~~~~~v~~~~~~~~~ld~e~l~~~l~~~~-~~i~-i~-~ 236 (471)
+++.++......+. -+...|.+..|+|.++..+++.+| .++..+++-..++-.+|++.+...|...| +.|+ +. +
T Consensus 107 sGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~APe~si~iLhaC 186 (410)
T KOG1412|consen 107 SGTGALRIAADFLATFYNKNTVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKCVDLEGFLSDLESAPEGSIIILHAC 186 (410)
T ss_pred cccchhhhhHHHHHHhcccceeEecCCchhHHHHHHHHcCCceeeeeeeecCCCceecHHHHHHHHhhCCCCcEEeeecc
Confidence 77888876555442 235679999999999999999999 55677776555566799999999887543 3444 33 4
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCc--cccccCCCCCCceEEEecCCcccCccchhheee
Q 012095 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH--TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYI 314 (471)
Q Consensus 237 p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~--~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v 314 (471)
.|||||...++|+|.+|+++.++. +++.+.|-+|.+|..++... ..+..+......++++.||+|.||+.|-|+|-+
T Consensus 187 AhNPTGmDPT~EQW~qia~vik~k-~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfGlYneRvGnl 265 (410)
T KOG1412|consen 187 AHNPTGMDPTREQWKQIADVIKSK-NLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFGLYNERVGNL 265 (410)
T ss_pred ccCCCCCCCCHHHHHHHHHHHHhc-CceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhcccccccccce
Confidence 499999999999999999999998 99999999999987654322 222333333456899999999999999999975
Q ss_pred Ec---CHH----HHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHH---HHHHHHHHHHHHHHHHHHhcCC--CC-C
Q 012095 315 AG---PKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEV---VSKMVKAFRERRDFLVKSFGEL--EG-V 381 (471)
Q Consensus 315 ~~---~~~----~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~---~~~~~~~~~~~r~~l~~~L~~~--~g-~ 381 (471)
.. ++. +..+|..+.+...++|+..+..++...|..+.+.++| +..+-.+.++.|..|++.|..+ || |
T Consensus 266 tvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~MssRI~~MR~aLrd~L~aL~TPGtW 345 (410)
T KOG1412|consen 266 TVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMSSRIKKMRTALRDHLVALKTPGTW 345 (410)
T ss_pred EEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH
Confidence 42 333 4455666666677789999999999999986665667 4556678899999999999886 66 7
Q ss_pred eeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec-CHHHHHHHHHHHHH
Q 012095 382 KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKK 460 (471)
Q Consensus 382 ~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~-~~e~i~~~~~~l~~ 460 (471)
..+..+.|||-+..+ ....+++|.+++.|++.+-. ||+++. +..+++...++|.+
T Consensus 346 DHI~~QiGMFSyTGL----------------tp~qV~~li~~h~vyLl~~G--------RInisGLN~~NveyVAkAIde 401 (410)
T KOG1412|consen 346 DHITQQIGMFSYTGL----------------TPAQVDHLIENHKVYLLSDG--------RINISGLNMKNVEYVAKAIDE 401 (410)
T ss_pred HHHHhhccceeecCC----------------CHHHHHHHHHhceEEEecCC--------cEeeeccccccHHHHHHHHHH
Confidence 777789999887654 23567889999999998855 999998 77899999999999
Q ss_pred HHHhhCCC
Q 012095 461 GLLTLRPG 468 (471)
Q Consensus 461 ~l~~~~~~ 468 (471)
+++.+.+.
T Consensus 402 ~Vr~~~~~ 409 (410)
T KOG1412|consen 402 TVRAIKSN 409 (410)
T ss_pred HHHhhccC
Confidence 99887654
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-24 Score=220.54 Aligned_cols=332 Identities=15% Similarity=0.163 Sum_probs=215.8
Q ss_pred cCCCeEEcCCCC-CCCCChHHHHHHHHHHHHc-CCCCCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 93 AGVSVIRLAAGE-PDFDTPVLIAEAGINAIRE-GFTRYTPN--AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 93 ~g~~~i~l~~g~-~~~~~p~~v~~a~~~~~~~-~~~~Y~~~--~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
.|+.++|++.+. ..+..++++.+++.+++.+ +...++.. ....+..+.+++.+.+..|. +.++.++| +++.
T Consensus 44 ~g~~~ld~~s~~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~~~----~~~~~~sG-~~a~ 118 (402)
T PRK07505 44 DGHTFVNFVSCSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELFGA----SVLTFTSC-SAAH 118 (402)
T ss_pred CCceEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHhCC----CEEEECCh-HHHH
Confidence 578899997754 3334588999999998875 21122111 12345566666666655552 45555555 4566
Q ss_pred HHHHHHhc----CCCC-eEEEcCCCCCChH---HHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCC
Q 012095 169 LQAVLAVC----SPGD-EVIIPAPFWVSYP---EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNP 240 (471)
Q Consensus 169 ~~~~~~l~----~~gd-~Vlv~~p~y~~~~---~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NP 240 (471)
..++..+. .+|+ .|++.+..|++.. ......+.+++.+|. .|++.++++++++++++++++|+||
T Consensus 119 ~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~~~~~~~~~vl~~p~~~ 191 (402)
T PRK07505 119 LGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICADETEVETIDH-------NDLDALEDICKTNKTVAYVADGVYS 191 (402)
T ss_pred HHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeCC-------CCHHHHHHHHhcCCCEEEEEecccc
Confidence 65565432 2233 3656665554322 112224567777775 3889999998877899999999999
Q ss_pred cccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCcc-ccccCCC-CCCceEEEecCCcccCccchhheeeE-cC
Q 012095 241 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT-SFASLPG-MWERTLTVNGFSKAFAMTGWRLGYIA-GP 317 (471)
Q Consensus 241 tG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~-~~~~~i~~~S~SK~~g~~G~R~G~v~-~~ 317 (471)
||.+++ +++|.++|++| ++++|+||+|....++..... ....+.. ..+++++++||||.+|++| ||++ .+
T Consensus 192 ~G~~~~---~~~i~~l~~~~-~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~G---g~~~~~~ 264 (402)
T PRK07505 192 MGGIAP---VKELLRLQEKY-GLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGASG---GVIMLGD 264 (402)
T ss_pred cCCcCC---HHHHHHHHHHc-CCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhccC---eEEEeCC
Confidence 999999 88889999999 999999999976545432211 1112222 3578999999999999777 8987 47
Q ss_pred HHHHHHHHHHHhcccC--CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceE--Ee
Q 012095 318 KHFVAACNKIQSQFTS--GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY--LF 393 (471)
Q Consensus 318 ~~~i~~l~~~~~~~~~--~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~--~~ 393 (471)
+++++.+......+++ ++++++..++.++++.. .++++.+..+.++++.+.+...+.. ...+.++ .+
T Consensus 265 ~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~g~~~~i~~ 335 (402)
T PRK07505 265 AEQIELILRYAGPLAFSQSLNVAALGAILASAEIH--LSEELDQLQQKLQNNIALFDSLIPT-------EQSGSFLPIRL 335 (402)
T ss_pred HHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHH--hccCcHHHHHHHHHHHHHHHHHHHh-------cCCCCCCCEEE
Confidence 8899988876555544 34557777777777621 1334445555555555544332211 1123222 23
Q ss_pred EecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012095 394 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAA--SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~---~~~iRis~~~--~~e~i~~~~~~l~~~l~~ 464 (471)
+.++.. .+..++.+.|+++ ||.+.++..+.. +++|||++.. +++++++++++|++++++
T Consensus 336 ~~~~~~-----------~~~~~~~~~l~~~-Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l~~ 399 (402)
T PRK07505 336 IYIGDE-----------DTAIKAAKQLLDR-GFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLLKEILDE 399 (402)
T ss_pred EEeCCH-----------HHHHHHHHHHHHC-CCeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence 333211 1356789988876 999998754432 2589999995 999999999999998864
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-24 Score=217.40 Aligned_cols=330 Identities=17% Similarity=0.146 Sum_probs=231.2
Q ss_pred CCCeEEcCCCC-CCCCChHHHHHHHHHHHHcCCCCCC---CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 94 GVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFTRYT---PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 94 g~~~i~l~~g~-~~~~~p~~v~~a~~~~~~~~~~~Y~---~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
++++++|++++ ..+...+.++++..+++.+.-.+.+ ...|...+.+.+.+.+++.+| .++.+++++|....+
T Consensus 101 ~r~~l~FsSndYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g---~e~all~sSGy~AN~- 176 (476)
T PLN02955 101 FKKLLLFSGNDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKK---KEDCLVCPTGFAANM- 176 (476)
T ss_pred CceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHC---CCcEEEECChHHHHH-
Confidence 45789999998 7788889999999998876211111 235665566666666665555 445555666655544
Q ss_pred HHHHHh--------------cCCCCeEEEcCCCCCChHHHHHHc----CCEEEEecCCCCCCCcCCHHHHHhhhcc---C
Q 012095 170 QAVLAV--------------CSPGDEVIIPAPFWVSYPEMARIA----DATPVILPTRISENFLLDPKVLESKLTE---K 228 (471)
Q Consensus 170 ~~~~~l--------------~~~gd~Vlv~~p~y~~~~~~~~~~----G~~~~~v~~~~~~~~~ld~e~l~~~l~~---~ 228 (471)
.++.+| ..++|.|+.+.-.|.+....+++. +++++.++.+ |++.|+++++. +
T Consensus 177 ~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~HN-------D~~~Le~~L~~~~~~ 249 (476)
T PLN02955 177 AAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHC-------DMYHLNSLLSSCKMK 249 (476)
T ss_pred HHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCCC-------CHHHHHHHHHhCCCC
Confidence 456555 245678888888999999999887 5777777742 89999988843 3
Q ss_pred CcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccc
Q 012095 229 SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 308 (471)
Q Consensus 229 ~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 308 (471)
.++|++....++.|.+.+ +++|.++|++| ++++|+||+|+.++++..+......+....+..|+++||||++|..|
T Consensus 250 ~~~Vv~EgV~SmdGdiap---L~eL~~L~~~~-ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~~G 325 (476)
T PLN02955 250 RKVVVTDSLFSMDGDFAP---MEELSQLRKKY-GFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGCHG 325 (476)
T ss_pred ceEEEEeCCCCCCCCcCC---HHHHHHHHHHc-CcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccchhccC
Confidence 445555666899999999 99999999999 99999999999888865433333333223577899999999998777
Q ss_pred hhheeeEcCHHHHHHHHHHHhcccCCC--ChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC
Q 012095 309 WRLGYIAGPKHFVAACNKIQSQFTSGA--SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (471)
Q Consensus 309 ~R~G~v~~~~~~i~~l~~~~~~~~~~~--~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p 386 (471)
||+++++++++.+......+.++. ++....++.+++... ..-...++.++++.+++.+.+ |+.+
T Consensus 326 ---Gfi~gs~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~----~~~~~~r~~L~~n~~~fr~~~----G~~~--- 391 (476)
T PLN02955 326 ---GFIACSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVA----RKEKWRRKAIWERVKEFKALS----GVDI--- 391 (476)
T ss_pred ---ceeecHHHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhc----CCCC---
Confidence 999999999999887655543333 333444445555431 111235667777777777642 5543
Q ss_pred CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCC---CcEEEEeec--CHHHHHHHHHHHHHH
Q 012095 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD---TCIRISYAA--SLTTLQAAVERIKKG 461 (471)
Q Consensus 387 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~---~~iRis~~~--~~e~i~~~~~~l~~~ 461 (471)
. ...+.+.+... ....++.++|+++ ||++.+..+...+ ..+||++.. ++++|+++++.|.++
T Consensus 392 ~-sPI~pI~ig~~-----------~~a~~~~~~L~~~-Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~~~ 458 (476)
T PLN02955 392 S-SPIISLVVGNQ-----------EKALKASRYLLKS-GFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALSSC 458 (476)
T ss_pred C-CCEEEEEeCCH-----------HHHHHHHHHHHHC-CCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHHHH
Confidence 1 33344555432 1466788998876 9999987766544 469999987 999999999999988
Q ss_pred HHhh
Q 012095 462 LLTL 465 (471)
Q Consensus 462 l~~~ 465 (471)
....
T Consensus 459 ~~~~ 462 (476)
T PLN02955 459 LDFD 462 (476)
T ss_pred Hhhh
Confidence 6543
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-25 Score=223.51 Aligned_cols=327 Identities=17% Similarity=0.178 Sum_probs=226.7
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCCCCC---CC------CCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHH
Q 012095 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRY---TP------NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (471)
Q Consensus 97 ~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y---~~------~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~a 167 (471)
.+.|..+... +.|+.+.+++.+.+.....+- .. .....++|+.++++ +| .++++|++|+|++++
T Consensus 4 ~~yld~aa~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~----~g--~~~~~v~~~~g~t~a 76 (402)
T TIGR02006 4 PIYLDYAATT-PVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAEL----IG--ADSREIVFTSGATES 76 (402)
T ss_pred cEEeeCCcCC-CCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHH----hC--CCCCeEEEeCCHHHH
Confidence 3666666654 457788888887764321110 00 01223344555554 55 467899999999999
Q ss_pred HHHHHHHhc----CCCCeEEEcCCCCCChHHHH---HHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCC
Q 012095 168 ILQAVLAVC----SPGDEVIIPAPFWVSYPEMA---RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNP 240 (471)
Q Consensus 168 l~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~---~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NP 240 (471)
+..++.++. .+||.|+++.+.|+++...+ +..|++++.++++. ++.+|++.++++++++++++++++++||
T Consensus 77 ~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~lv~v~~~~n~ 154 (402)
T TIGR02006 77 NNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKS--NGLIDLEELKAAIRDDTILVSIMHVNNE 154 (402)
T ss_pred HHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCC--CCcCCHHHHHHhcCCCCEEEEEECCCcC
Confidence 998877653 68999999999998866543 44699999999863 4568999999999888999999999999
Q ss_pred cccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHH
Q 012095 241 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 320 (471)
Q Consensus 241 tG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~ 320 (471)
||.+.+ +++|.++|+++ ++++++|+++... .....+.. .+-.+++.|+.|.+|.+| +|+++.+++.
T Consensus 155 tG~~~~---~~~I~~l~~~~-g~~livD~a~a~g----~~~~~~~~----~~~D~~~~s~~K~~gp~G--~G~l~~~~~~ 220 (402)
T TIGR02006 155 IGVIQD---IAAIGEICRER-KVFFHVDAAQSVG----KIPINVNE----LKVDLMSISGHKIYGPKG--IGALYVRRKP 220 (402)
T ss_pred ceeccc---HHHHHHHHHHc-CCEEEEEcchhcC----CcccCccc----cCCCEEEEehhhhcCCCc--eEEEEEccCC
Confidence 999999 88999999999 9999999998752 21111111 234578888889887446 8998877654
Q ss_pred HHHHHHHH-------hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCc----c
Q 012095 321 VAACNKIQ-------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG----A 389 (471)
Q Consensus 321 i~~l~~~~-------~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~----g 389 (471)
...+.... .....+++.....++.++|+. ..++++...+++++.++++.+.|++++++.+..+.. +
T Consensus 221 ~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~---~~~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~ 297 (402)
T TIGR02006 221 RVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRI---AKEEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPG 297 (402)
T ss_pred CCCCCceecCCCccCCccCCCccHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCC
Confidence 33222110 111223555555555567764 245677888899999999999999888876653211 1
Q ss_pred eEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------------------CCcEEEEeec--CH
Q 012095 390 FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------------------DTCIRISYAA--SL 448 (471)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~-------------------~~~iRis~~~--~~ 448 (471)
. +.+.++.. +..++...| .++.+..|..+.. .+++|+|++. ++
T Consensus 298 ~-~~v~f~~~------------~~~~~~~~l---~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~ 361 (402)
T TIGR02006 298 N-LNVSFNYV------------EGESLIMAL---KDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTE 361 (402)
T ss_pred e-EEEEEeCc------------CHHHHHHhc---CCEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCH
Confidence 1 12233321 345565544 3788877765432 2689999997 89
Q ss_pred HHHHHHHHHHHHHHHhh
Q 012095 449 TTLQAAVERIKKGLLTL 465 (471)
Q Consensus 449 e~i~~~~~~l~~~l~~~ 465 (471)
+|++++++.|+++++.+
T Consensus 362 edid~l~~~l~~~~~~~ 378 (402)
T TIGR02006 362 EEIDYAVKLVKSAIDKL 378 (402)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988765
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.6e-25 Score=222.37 Aligned_cols=342 Identities=16% Similarity=0.110 Sum_probs=225.6
Q ss_pred cCCCeEEcCCCCCCCC---ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGEPDFD---TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~~~~~---~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.+||+..|..... .+|.+.+++.+++....... +. -..+..+.+++.+.+..+ .+.++++++++++..
T Consensus 29 dg~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~~~~----~~~~~~~~SGs~A~e 102 (400)
T PTZ00125 29 EGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTS-RA-FYNDVLGLAEKYITDLFG----YDKVLPMNSGAEAGE 102 (400)
T ss_pred CCCEEEEcccCHhhccCCcCCHHHHHHHHHHHHhccccc-cc-ccCHHHHHHHHHHHhCCC----CCEEEEeCCcHHHHH
Confidence 5778999988875443 37889999999876532221 11 113455566666655444 258899999999999
Q ss_pred HHHHHhcC----------CCCeEEEcCCCCCChHHH-HHHcCCEEEE---ecCCCC--CCCcCCHHHHHhhhc-cCCcEE
Q 012095 170 QAVLAVCS----------PGDEVIIPAPFWVSYPEM-ARIADATPVI---LPTRIS--ENFLLDPKVLESKLT-EKSRLL 232 (471)
Q Consensus 170 ~~~~~l~~----------~gd~Vlv~~p~y~~~~~~-~~~~G~~~~~---v~~~~~--~~~~ld~e~l~~~l~-~~~~~i 232 (471)
.+++.+.. .++.|++.+-+|.+.... ....+..... .+.... .-...|++++++.++ +++++|
T Consensus 103 ~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~v 182 (400)
T PTZ00125 103 TALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQDPNVAAF 182 (400)
T ss_pred HHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhCCCCeEEE
Confidence 99887631 346788888877765533 3332221110 011000 000138999999986 678899
Q ss_pred EEcCCCCCcccCCC-HHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhh
Q 012095 233 ILCSPSNPTGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRL 311 (471)
Q Consensus 233 ~i~~p~NPtG~~~~-~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~ 311 (471)
++..++||||.+++ .+.+++|.++|++| |+++|+||+|..+.+.|... . ....+.... +.+|||.++.+++|+
T Consensus 183 ~~ep~~~~~G~~~~~~~~l~~l~~l~~~~-~~lli~Dev~~g~g~~G~~~-~-~~~~~~~pd---~~~~sK~l~~g~~~i 256 (400)
T PTZ00125 183 IVEPIQGEAGVIVPDDGYLKQVYELCKKY-NVLLIVDEIQTGLGRTGKLL-A-HDHEGVKPD---IVLLGKALSGGLYPI 256 (400)
T ss_pred EEcCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCccchhh-H-HHhcCCCCC---EEEEcccccCCCcCc
Confidence 89888999999886 56699999999999 99999999998765444211 1 111111111 335789998444699
Q ss_pred eeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC----CCCCeeeCCC
Q 012095 312 GYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE----LEGVKMSEPQ 387 (471)
Q Consensus 312 G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~----~~g~~~~~p~ 387 (471)
||+++++++++.+.......+++.+++.+.++.++|+.- .+ ....+..+++.+++.+.|.+ .+.+....+
T Consensus 257 g~v~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i---~~--~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~- 330 (400)
T PTZ00125 257 SAVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVL---KE--EKLAENAQRLGEVFRDGLKELLKKSPWVKEIRG- 330 (400)
T ss_pred EEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHH---Hh--cCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEec-
Confidence 999999999998865444556678899999988877641 11 11233334444555555544 222333445
Q ss_pred cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHHHHHHHhh
Q 012095 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 388 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~~ 465 (471)
.|.++|+.++.... .+..++++.|+++ ||.+.|+. .++|||++. .+++++++++++|.++++++
T Consensus 331 ~g~~~~v~~~~~~~---------~~~~~~~~~l~~~-Gv~v~~~~----~~~lRi~~~~~~~~~~i~~~l~~l~~~l~~~ 396 (400)
T PTZ00125 331 KGLLNAIVFDHSDG---------VNAWDLCLKLKEN-GLLAKPTH----DNIIRFAPPLVITKEQLDQALEIIKKVLKSF 396 (400)
T ss_pred ccEEEEEEEccCcc---------hHHHHHHHHHHHC-CeEEeecC----CCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 45556777753100 1467888988865 99999863 578999965 59999999999999999876
Q ss_pred C
Q 012095 466 R 466 (471)
Q Consensus 466 ~ 466 (471)
.
T Consensus 397 ~ 397 (400)
T PTZ00125 397 D 397 (400)
T ss_pred h
Confidence 4
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-25 Score=223.78 Aligned_cols=326 Identities=17% Similarity=0.187 Sum_probs=221.7
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHH--cCCCCCC---CC------CCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChH
Q 012095 97 VIRLAAGEPDFDTPVLIAEAGINAIR--EGFTRYT---PN------AGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165 (471)
Q Consensus 97 ~i~l~~g~~~~~~p~~v~~a~~~~~~--~~~~~Y~---~~------~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~ 165 (471)
.|.|..+... ++|+.+.+++.+.+. ....+.. .. ....++|+.++++ .| .++++|++++|++
T Consensus 4 ~iyld~a~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~----~g--~~~~~v~~~~g~t 76 (404)
T PRK14012 4 PIYLDYSATT-PVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADL----IG--ADPREIVFTSGAT 76 (404)
T ss_pred eEEecCcCCC-CCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHH----cC--cCcCeEEEeCCHH
Confidence 3666666654 457778888888765 2111110 00 1123444555544 45 3568899999999
Q ss_pred HHHHHHHHHhc----CCCCeEEEcCCCCCChHHHHH---HcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCC
Q 012095 166 QSILQAVLAVC----SPGDEVIIPAPFWVSYPEMAR---IADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 238 (471)
Q Consensus 166 ~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~~---~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~ 238 (471)
+++..++.++. .+||+|+++++.|+++...++ ..|++++.++.+. ++.+|+++++++++++++++++++++
T Consensus 77 ~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~--~g~~d~~~l~~~i~~~t~lv~~~~~~ 154 (404)
T PRK14012 77 ESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQS--NGIIDLEKLEAAMRDDTILVSIMHVN 154 (404)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCC--CCcCCHHHHHHhcCCCCEEEEEECcC
Confidence 99998887764 789999999999988765443 4599999998863 45689999999999999999999999
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCH
Q 012095 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 318 (471)
Q Consensus 239 NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~ 318 (471)
||||.+++ +++|.++|+++ +++||+|+++.. +.....+.. .+..+++.|++|.+| |+ ++|++++++
T Consensus 155 n~tG~~~~---~~~I~~la~~~-g~~vivD~a~~~----g~~~~~~~~----~~~D~~~~s~~K~~g-p~-g~G~l~~~~ 220 (404)
T PRK14012 155 NEIGVIQD---IAAIGEICRER-GIIFHVDAAQSV----GKVPIDLSK----LKVDLMSFSAHKIYG-PK-GIGALYVRR 220 (404)
T ss_pred CCccchhh---HHHHHHHHHHc-CCEEEEEcchhc----CCcccCccc----CCCCEEEEehhhccC-CC-ceEEEEEec
Confidence 99999999 88999999999 999999999874 221112221 233477789999887 54 689988876
Q ss_pred HHHHHHHHH-H-----hcccC-CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC-----
Q 012095 319 HFVAACNKI-Q-----SQFTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP----- 386 (471)
Q Consensus 319 ~~i~~l~~~-~-----~~~~~-~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p----- 386 (471)
+....+... . ..+.. +++.....+..+++.. .+.+.....++.++.++++.+.|++++++.+..+
T Consensus 221 ~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~---~~~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~ 297 (404)
T PRK14012 221 KPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARI---AKEEMATENERIRALRDRLWNGIKDIEEVYLNGDLEQRV 297 (404)
T ss_pred CCCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccC
Confidence 543222211 0 00111 2333333334455543 2344566778888899999999988877765422
Q ss_pred CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------------------CCcEEEEeec-
Q 012095 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------------------DTCIRISYAA- 446 (471)
Q Consensus 387 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~-------------------~~~iRis~~~- 446 (471)
...+++++.+. +..++...| + ++.+..|..|.. .+.||++++.
T Consensus 298 ~~~~~~~~~~~--------------~~~~~~~~l--~-~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~ 360 (404)
T PRK14012 298 PGNLNVSFNYV--------------EGESLIMAL--K-DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRF 360 (404)
T ss_pred CCEEEEEEeCc--------------CHHHHHHhC--C-CeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCC
Confidence 12234454442 234566654 2 667766654421 2679999997
Q ss_pred -CHHHHHHHHHHHHHHHHhh
Q 012095 447 -SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 447 -~~e~i~~~~~~l~~~l~~~ 465 (471)
++++++++++.|+++++.+
T Consensus 361 ~t~~dvd~~~~~l~~~~~~~ 380 (404)
T PRK14012 361 TTEEEIDYAIELVRKSIGKL 380 (404)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 8899999999999988765
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-25 Score=220.40 Aligned_cols=285 Identities=15% Similarity=0.167 Sum_probs=198.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHH----HcCCEEEE
Q 012095 130 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IADATPVI 205 (471)
Q Consensus 130 ~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~----~~G~~~~~ 205 (471)
+++...+|++.+++++ | ..+. +++++++.++..++.+++++||+|+++.|.|......+. ..|.++..
T Consensus 59 ~~pt~~~Le~~lA~l~----G---~~~a-l~~~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~ 130 (386)
T PRK06767 59 GNPTVKLFEERMAVLE----G---GEEA-LAFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSF 130 (386)
T ss_pred CCcchHHHHHHHHHHh----C---CCcE-EEECCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEE
Confidence 5556788888888886 3 2344 445555678988998999999999999999887665443 34665555
Q ss_pred ecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccc
Q 012095 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 285 (471)
Q Consensus 206 v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~ 285 (471)
++. .|++++++++++++++|++++|+||||.+++ +++|.++|+++ ++++|+|++|....+. .++
T Consensus 131 ~~~-------~d~~~l~~~i~~~tklV~lesp~NptG~v~d---l~~I~~la~~~-g~~vivD~a~a~~~~~----~pl- 194 (386)
T PRK06767 131 CDM-------ETEADIENKIRPNTKLIFVETPINPTMKLID---LKQVIRVAKRN-GLLVIVDNTFCSPYLQ----RPL- 194 (386)
T ss_pred eCC-------CCHHHHHHhhCcCceEEEEeCCCCCCceecC---HHHHHHHHHHc-CCEEEEECCCcccccC----Cch-
Confidence 543 3889999999889999999999999999999 88999999999 9999999999643221 111
Q ss_pred cCCCCCCceEEEecCCcccCccchhh-eeeEcCHHHHHHHHH-HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHH
Q 012095 286 SLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVAACNK-IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (471)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~g~~G~R~-G~v~~~~~~i~~l~~-~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~ 363 (471)
. .+..+++.|+||.++.+|+|+ ||+++++++++++.+ .......+.+++.+.++...|+ .+....++
T Consensus 195 ~----~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L~-------tl~~r~~~ 263 (386)
T PRK06767 195 E----LGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIMAPFDAWLLLRGLK-------TLAVRMDR 263 (386)
T ss_pred h----cCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCC-------cHHHHHHH
Confidence 1 233488999999998789886 999999998877643 3333444456665554433332 24456677
Q ss_pred HHHHHHHHHHHhcCCCCCee-eCC-----------CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECC
Q 012095 364 FRERRDFLVKSFGELEGVKM-SEP-----------QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG 431 (471)
Q Consensus 364 ~~~~r~~l~~~L~~~~g~~~-~~p-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg 431 (471)
.++++..+.+.|+++|+++. ..| .||+ +.+.+... ..+..+|.+.|. ..++.+.-|
T Consensus 264 ~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~-vsf~l~~~----------~~~~~~f~~~l~-~~~~~~s~G 331 (386)
T PRK06767 264 HCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGV-ISFSIKGG----------KEETQAFINDLH-FITIAVSLG 331 (386)
T ss_pred HHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCce-EEEEEcCC----------HHHHHHHHHhCC-ccEEecCCC
Confidence 88999999999999998763 322 3455 44456421 014567777763 345655555
Q ss_pred CCCC-----------------------CCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012095 432 DAFG-----------------------DDTCIRISYAASLTTLQAAVERIKKGLL 463 (471)
Q Consensus 432 ~~f~-----------------------~~~~iRis~~~~~e~i~~~~~~l~~~l~ 463 (471)
.... .++.||+|++.. +.+..++.|.+++.
T Consensus 332 ~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGlE--~~~dl~~dl~~al~ 384 (386)
T PRK06767 332 DTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGLE--SWEDIVSDLEQALK 384 (386)
T ss_pred CcCccccCCCccccccCCHHHHHhcCCCCCeEEEEeccC--CHHHHHHHHHHHHh
Confidence 3221 125799999983 34455555555554
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=216.75 Aligned_cols=217 Identities=13% Similarity=0.198 Sum_probs=165.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCC----ChHHHHHHcCCEEEE
Q 012095 130 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWV----SYPEMARIADATPVI 205 (471)
Q Consensus 130 ~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~----~~~~~~~~~G~~~~~ 205 (471)
.++...+|++.++++++ ....+++ +++++++..++.++++|||+|+++.|.|. .|...++..|++++.
T Consensus 43 ~~p~~~~L~~~lA~l~g-------~~~~v~~-~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~ 114 (376)
T PRK06460 43 ANPTVLELTKKIVELEN-------AEMGVAF-SSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDA 114 (376)
T ss_pred CCccHHHHHHHHHHHhC-------CCcEEEe-CCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEE
Confidence 44667889999998863 2235555 44568999999999999999999987654 445677889999988
Q ss_pred ecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccc
Q 012095 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 285 (471)
Q Consensus 206 v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~ 285 (471)
++.+ +.+.+++.+++++|+|++++|+||||.+++ +++|+++|+++ +++||+||+|.... ...
T Consensus 115 ~~~~-------~~~~l~~~~~~~tklV~l~sp~NPtG~v~d---~~~I~~la~~~-g~~vivDea~~~~~-------~~~ 176 (376)
T PRK06460 115 SNPG-------SDNIIEKAKSKRYDVVFVENITNPLLRVVD---ITELSKVCKEN-GSILIVDATFSTPI-------NQK 176 (376)
T ss_pred ECCC-------CHHHHHHhcCCCceEEEEECCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCcCccc-------cCC
Confidence 8753 234455656778999999999999999999 67789999999 99999999997521 111
Q ss_pred cCCCCCCceEEEecCCcccC-ccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHH
Q 012095 286 SLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364 (471)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~g-~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~ 364 (471)
.+ ..+..+++.|+||.++ ..|.|+||+++++++++.+.+.+..++.+.++.. +..++. ..++++..+++.
T Consensus 177 ~l--~~~~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~~~g~~~~~~~---a~~~l~----~~~~l~~r~~~~ 247 (376)
T PRK06460 177 PL--ELGADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRTLGTSLDPHA---AYLTLR----GIKTLKIRMDVI 247 (376)
T ss_pred hh--hcCCCEEEeecceeccCCCCceEEEEecCHHHHHHHHHHHHhcCCCCCHHH---HHHHHh----chhhHHHHHHHH
Confidence 11 1245699999999985 2236799999999999999988777776655533 344444 257788889999
Q ss_pred HHHHHHHHHHhcCCCCC
Q 012095 365 RERRDFLVKSFGELEGV 381 (471)
Q Consensus 365 ~~~r~~l~~~L~~~~g~ 381 (471)
.++++.+.+.|++.|.+
T Consensus 248 ~~n~~~l~~~L~~~p~v 264 (376)
T PRK06460 248 NRNAEQIAEFLEGHPKV 264 (376)
T ss_pred HHHHHHHHHHHHcCCCc
Confidence 99999999999987665
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-24 Score=217.26 Aligned_cols=215 Identities=16% Similarity=0.192 Sum_probs=167.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH----HHHHcCCEEEEecC
Q 012095 133 GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVILPT 208 (471)
Q Consensus 133 G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~G~~~~~v~~ 208 (471)
-..+|++.+++++ | .+++++++|+++++..++.+++++||+|+++.+.|.+... .+...|++++.+++
T Consensus 62 ~~~~le~~la~l~----g----~~~~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 133 (390)
T PRK08133 62 TVTMFQERLAALE----G----AEACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDL 133 (390)
T ss_pred HHHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECC
Confidence 3456777777764 3 3578999999999999999999999999999999977553 45678999999976
Q ss_pred CCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCC
Q 012095 209 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 288 (471)
Q Consensus 209 ~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 288 (471)
+ |++++++++++++|+|++++|+||||.+.+ +++|+++|+++ +++||+|++|....+. .++ .
T Consensus 134 ~-------d~~~l~~~i~~~tklV~ie~p~NptG~v~d---l~~I~~la~~~-gi~livD~t~~~~~~~----~pl-~-- 195 (390)
T PRK08133 134 T-------DLDAWRAAVRPNTKLFFLETPSNPLTELAD---IAALAEIAHAA-GALLVVDNCFCTPALQ----QPL-K-- 195 (390)
T ss_pred C-------CHHHHHHhcCcCCeEEEEECCCCCCCCcCC---HHHHHHHHHHc-CCEEEEECCCcccccC----Cch-h--
Confidence 3 789999999999999999999999999998 89999999999 9999999998653221 111 1
Q ss_pred CCCCceEEEecCCcccCccchhh-eeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Q 012095 289 GMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367 (471)
Q Consensus 289 ~~~~~~i~~~S~SK~~g~~G~R~-G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~ 367 (471)
.+..+++.|+||.++.+|+++ ||+++++++++.+.........+++++.+.. ++.. .+.+....+++.++
T Consensus 196 --~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~~g~~~~~~~a~~---~l~g----l~tl~~R~~~~~~~ 266 (390)
T PRK08133 196 --LGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTAGPTLSPFNAWV---FLKG----LETLSLRMEAHSAN 266 (390)
T ss_pred --hCCcEEEeecceeecCCcceEeEEEEcCHHHHHHHHHHHHHhCCCCCHHHHHH---HHcc----cchHHHHHHHHHHH
Confidence 233488999999998889998 6777888888887766655555555555333 3332 23566667777788
Q ss_pred HHHHHHHhcCCCCCe
Q 012095 368 RDFLVKSFGELEGVK 382 (471)
Q Consensus 368 r~~l~~~L~~~~g~~ 382 (471)
+..+.+.|++.|++.
T Consensus 267 a~~la~~L~~~p~v~ 281 (390)
T PRK08133 267 ALALAEWLEAHPGVE 281 (390)
T ss_pred HHHHHHHHHhCCCee
Confidence 889999999887764
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-24 Score=216.62 Aligned_cols=333 Identities=13% Similarity=0.163 Sum_probs=227.8
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+++||+..|. ..++. +|.+.+++.+++.+.. ..+. ....+....+++.+.+..+ .+.++++++++++..
T Consensus 33 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~-~~~~-~~~~~~~~~la~~L~~~~~----~~~~~f~~SGseA~e 106 (397)
T TIGR03246 33 QGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLW-HIGN-GYTNEPVLRLAKKLVDATF----ADKVFFCNSGAEANE 106 (397)
T ss_pred CCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhcc-cccC-ccCCHHHHHHHHHHHhhCC----CCEEEEeCCcHHHHH
Confidence 678899998873 34444 7899999999887522 1111 1123455666666665443 369999999999999
Q ss_pred HHHHHhc-------CCC-CeEEEcCCCCCChHH-HHHHcCCE------------EEEecCCCCCCCcCCHHHHHhhhccC
Q 012095 170 QAVLAVC-------SPG-DEVIIPAPFWVSYPE-MARIADAT------------PVILPTRISENFLLDPKVLESKLTEK 228 (471)
Q Consensus 170 ~~~~~l~-------~~g-d~Vlv~~p~y~~~~~-~~~~~G~~------------~~~v~~~~~~~~~ld~e~l~~~l~~~ 228 (471)
.+++... .+| +.|+..+-+|++... .....+.. +..++. .|++.+++.+.++
T Consensus 107 ~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~ 179 (397)
T TIGR03246 107 AALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPY-------NDLAAAKALISDK 179 (397)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCC-------CCHHHHHHHhccC
Confidence 9988752 123 567777777776543 33333321 122221 2899999999878
Q ss_pred CcEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCcc
Q 012095 229 SRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307 (471)
Q Consensus 229 ~~~i~i~~p~NPtG~~~-~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 307 (471)
+++|+++.+++++|... +.+.+++|.++|++| |+++|.||+|.++...|... ...... -..-+-+|||.+| +
T Consensus 180 ~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEv~tG~Gr~G~~~-a~~~~g----v~pDi~t~~K~lg-g 252 (397)
T TIGR03246 180 TCAVIVEPIQGEGGVVPADPAFLKGLRELCDRH-NALLIFDEVQTGVGRTGELY-AYMHYG----VTPDILTSAKALG-G 252 (397)
T ss_pred eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhcCCccccch-hhhhcC----CCCCEEEeehhhh-C
Confidence 88888876666677554 899999999999999 99999999998764433211 111111 1122447999998 8
Q ss_pred chhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCC---C-Cee
Q 012095 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE---G-VKM 383 (471)
Q Consensus 308 G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~---g-~~~ 383 (471)
|+|+||+++++++++.+.......+++.+++++.++.++|+.. + .+++.+.++++.+++.+.|+++. + +..
T Consensus 253 G~pigav~~~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~---~--~~~l~~~~~~~~~~l~~~L~~l~~~~~~~~~ 327 (397)
T TIGR03246 253 GFPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLV---N--TPELLAGVKQRHDLFVDGLEKINARYNVFSE 327 (397)
T ss_pred CcceeEEEEcHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHH---h--hccHHHHHHHHHHHHHHHHHHHHhcCCCeEe
Confidence 9999999999999988865444456678899999999988741 1 24567788888888888887751 1 222
Q ss_pred eCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe--ecCHHHHHHHHHHHHHH
Q 012095 384 SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY--AASLTTLQAAVERIKKG 461 (471)
Q Consensus 384 ~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~--~~~~e~i~~~~~~l~~~ 461 (471)
..+.|.+ +.+.+..... .....+++.|+++ ||.+.+.. ++++|++. ..++++|++++++|.++
T Consensus 328 vrg~G~~-~~i~~~~~~~---------~~~~~~~~~l~~~-Gv~~~~~g----~~~lR~~p~~~~t~~~i~~~~~~l~~~ 392 (397)
T TIGR03246 328 IRGKGLL-IGAVLTEAYQ---------GKAKQFVNAAAEE-GVIALIAG----PNVVRFAPSLVISDDDIDEGLARFERA 392 (397)
T ss_pred eecCceE-EEEEEcCchh---------hHHHHHHHHHHHC-CeEEeecC----CCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 3344444 4444432100 1467888888876 88887632 36899954 45999999999999999
Q ss_pred HHhh
Q 012095 462 LLTL 465 (471)
Q Consensus 462 l~~~ 465 (471)
++++
T Consensus 393 l~~~ 396 (397)
T TIGR03246 393 IEQV 396 (397)
T ss_pred HHHh
Confidence 8753
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-24 Score=216.72 Aligned_cols=218 Identities=16% Similarity=0.188 Sum_probs=168.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH----HHHHcCCEEEE
Q 012095 130 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVI 205 (471)
Q Consensus 130 ~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~G~~~~~ 205 (471)
+.+-..+|++.+++++ | .++.++++++++++..++.+++++||+|+++.|+|.++.. .+...|++++.
T Consensus 62 ~~p~~~~le~~lA~l~----g----~~~~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~ 133 (398)
T PRK08249 62 TNPTVQAFEEKVRILE----G----AEAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTL 133 (398)
T ss_pred CChHHHHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEE
Confidence 4455677888888875 3 2456777777899999999999999999999999987643 35567888877
Q ss_pred ecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccc
Q 012095 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 285 (471)
Q Consensus 206 v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~ 285 (471)
++. .|++.+++++++++++|++++|+||||.+++ +++|+++|+++ +++||+|++|....... ++
T Consensus 134 vd~-------~d~e~l~~~i~~~tklV~ie~p~NPtg~v~d---l~~I~~la~~~-gi~livD~t~a~~~~~~----~l- 197 (398)
T PRK08249 134 CET-------GDHEQIEAEIAKGCDLLYLETPTNPTLKIVD---IERLAAAAKKV-GALVVVDNTFATPINQN----PL- 197 (398)
T ss_pred cCC-------CCHHHHHHhcCCCCeEEEEECCCCCCCccCC---HHHHHHHHHHc-CCEEEEECCcCccccCC----ch-
Confidence 753 4899999999999999999999999999999 88899999999 99999999998643221 11
Q ss_pred cCCCCCCceEEEecCCcccCccchhh-eeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHH
Q 012095 286 SLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364 (471)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~g~~G~R~-G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~ 364 (471)
. .+..+++.|+||.++-.|.++ ||+++++++++++...+.....+.+++.+..+...|+ .+....++.
T Consensus 198 ~----~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~-------tL~~R~~~~ 266 (398)
T PRK08249 198 A----LGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYREINGATMDPMSAYLILRGMK-------TLKLRVRQQ 266 (398)
T ss_pred h----hCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcc-------hHHHHHHHH
Confidence 1 123388899999997566665 7788899999999888776676777777665554443 245555666
Q ss_pred HHHHHHHHHHhcCCCCCe
Q 012095 365 RERRDFLVKSFGELEGVK 382 (471)
Q Consensus 365 ~~~r~~l~~~L~~~~g~~ 382 (471)
.+++..+.+.|++.|.++
T Consensus 267 ~~na~~la~~L~~~p~v~ 284 (398)
T PRK08249 267 QESAMALAKYLQTHPKVE 284 (398)
T ss_pred HHHHHHHHHHHHcCCCee
Confidence 788888888888876543
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-24 Score=214.62 Aligned_cols=222 Identities=15% Similarity=0.191 Sum_probs=169.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcC
Q 012095 125 FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIAD 200 (471)
Q Consensus 125 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~G 200 (471)
..+| +++-..+|++.++++. | .+++++++|+++++..++.+++++||+|+++.|+|..+...+ ...|
T Consensus 45 Y~R~-~~p~~~~le~~lA~l~----g----~~~v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~ 115 (382)
T TIGR02080 45 YSRS-GNPTRDLLQQALAELE----G----GAGAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGC 115 (382)
T ss_pred ccCC-CCchHHHHHHHHHHHh----C----CCcEEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcC
Confidence 3455 5556678888888875 2 468999999999999999999999999999999998655433 2234
Q ss_pred CEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCC
Q 012095 201 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 280 (471)
Q Consensus 201 ~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~ 280 (471)
.++..++. .|++.+++++++++|+|++++|+||||.+++ +++|+++|+++ +++||+|++|......
T Consensus 116 ~~v~~~d~-------~d~~~l~~ai~~~tklV~l~~p~NPtG~~~d---l~~I~~la~~~-g~~vvvD~a~~~~~~~--- 181 (382)
T TIGR02080 116 FRVLFVDQ-------GDEQALRAALAQKPKLVLIETPSNPLLRVVD---IAKICHLAKAV-GAVVVVDNTFLSPALQ--- 181 (382)
T ss_pred eEEEEECC-------CCHHHHHHhcCcCceEEEEECCCCCCCEecC---HHHHHHHHHHc-CCEEEEECCCcccccC---
Confidence 55555431 3899999999989999999999999999999 78899999999 9999999999764321
Q ss_pred ccccccCCCCCCceEEEecCCcccC-ccchhheeeEc-CHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHH
Q 012095 281 HTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 358 (471)
Q Consensus 281 ~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~R~G~v~~-~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~ 358 (471)
.++ .+ +..++++|+||.++ .+|++.||+++ ++++++++...+...+.+.+++....+...| +.+.
T Consensus 182 -~pl-~~----gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr~l-------~tl~ 248 (382)
T TIGR02080 182 -NPL-AL----GADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGL-------RTLV 248 (382)
T ss_pred -Cch-hh----CCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHccc-------chHH
Confidence 111 11 22489999999985 57789999876 6788898888877777778888765553333 2344
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCe
Q 012095 359 KMVKAFRERRDFLVKSFGELEGVK 382 (471)
Q Consensus 359 ~~~~~~~~~r~~l~~~L~~~~g~~ 382 (471)
...++..++...+.+.|++.|.++
T Consensus 249 ~R~~~~~~na~~~a~~L~~~p~v~ 272 (382)
T TIGR02080 249 ARMRLQQRNAQAIVEYLQTQPLVK 272 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCee
Confidence 446666778888888888766543
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-24 Score=212.78 Aligned_cols=221 Identities=15% Similarity=0.175 Sum_probs=173.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHH----HcCC
Q 012095 126 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IADA 201 (471)
Q Consensus 126 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~----~~G~ 201 (471)
.+| +++...+|++.++++. | .+++++++|+++++..++.++++|||+|++++|+|.++...+. ..|.
T Consensus 47 ~R~-~~pt~~~L~~~lA~l~----g----~~~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi 117 (386)
T PRK08045 47 SRR-GNPTRDVVQRALAELE----G----GAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY 117 (386)
T ss_pred eCC-CCccHHHHHHHHHHHh----C----CCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCe
Confidence 455 5556678888888875 3 2469999999999999999999999999999999986443322 2344
Q ss_pred EEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCc
Q 012095 202 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 281 (471)
Q Consensus 202 ~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~ 281 (471)
++..++. .|++.+++++++++++|++++|+||||.+++ +++|.++|+++ +++||+|++|..... .
T Consensus 118 ~v~~vd~-------~d~e~l~~~l~~~tklV~l~sP~NPtG~v~d---i~~I~~ia~~~-g~~vivDeay~~~~~----~ 182 (386)
T PRK08045 118 RVLFVDQ-------GDEQALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREA-GAVSVVDNTFLSPAL----Q 182 (386)
T ss_pred EEEEeCC-------CCHHHHHHhcccCCeEEEEECCCCCCCEecC---HHHHHHHHHHc-CCEEEEECCCCcccc----C
Confidence 6655531 5899999999889999999999999999999 88899999999 999999999976422 1
Q ss_pred cccccCCCCCCceEEEecCCcccC-ccchhheeeEc-CHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHH
Q 012095 282 TSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 359 (471)
Q Consensus 282 ~~~~~~~~~~~~~i~~~S~SK~~g-~~G~R~G~v~~-~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~ 359 (471)
.++ .. +..+++.|++|.++ .++.+.||+++ ++++++.+...+...+.+.+++.+..+...|+. +..
T Consensus 183 ~pl-~~----gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl~t-------l~~ 250 (386)
T PRK08045 183 NPL-AL----GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRT-------LVP 250 (386)
T ss_pred Cch-hh----CCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcc-------HHH
Confidence 111 11 22389999999994 56677899876 678888888777778888999998887777764 666
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCe
Q 012095 360 MVKAFRERRDFLVKSFGELEGVK 382 (471)
Q Consensus 360 ~~~~~~~~r~~l~~~L~~~~g~~ 382 (471)
.+++..+++..+.+.|++.|.++
T Consensus 251 R~~~~~~na~~la~~L~~~p~v~ 273 (386)
T PRK08045 251 RMELAQRNAQAIVKYLQTQPLVK 273 (386)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEe
Confidence 77778888888888998877653
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-24 Score=214.98 Aligned_cols=337 Identities=14% Similarity=0.091 Sum_probs=226.4
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.+||+..|. ..++. ++.+.+++.+++.+..+ ++. ....+....+++.+.+..+ .+.++++++++++..
T Consensus 13 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-~~~-~~~~~~~~~la~~l~~~~~----~~~v~f~~sGseA~e 86 (382)
T PLN00144 13 EGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAH-VSN-VYHTIPQVELAKRLVASSF----ADRVFFCNSGTEANE 86 (382)
T ss_pred CCCEEEECCcCHHhccCCCCCHHHHHHHHHHHHhcCC-ccc-cccCHHHHHHHHHHHhcCC----CCeEEEeCCcHHHHH
Confidence 678899998886 33444 78999999999876321 211 1224455666776654322 368999999999999
Q ss_pred HHHHHhc---C------C------CCeEEEcCCCCCChHHHHHHcCCEEE----EecCCCCC---CCcCCHHHHHhhhcc
Q 012095 170 QAVLAVC---S------P------GDEVIIPAPFWVSYPEMARIADATPV----ILPTRISE---NFLLDPKVLESKLTE 227 (471)
Q Consensus 170 ~~~~~l~---~------~------gd~Vlv~~p~y~~~~~~~~~~G~~~~----~v~~~~~~---~~~ld~e~l~~~l~~ 227 (471)
.+++... . + ...|+....+|++....+........ +.|..+.. .| .|++.+++.+..
T Consensus 87 ~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~~~~ 165 (382)
T PLN00144 87 AAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEY-GNLEAARKLIQK 165 (382)
T ss_pred HHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCC-CCHHHHHHhcCC
Confidence 8888642 1 0 24688888889887654443322110 01111000 01 278999988853
Q ss_pred -CCcEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccc-cccCCCCCCceEEEecCCccc
Q 012095 228 -KSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS-FASLPGMWERTLTVNGFSKAF 304 (471)
Q Consensus 228 -~~~~i~i~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~~~i~~~S~SK~~ 304 (471)
++++|++...+||+|. ..+++.+++|.++|++| ++++|+||+|.++...+..... ...+.+ | +.||||.+
T Consensus 166 ~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~-g~llI~DEv~tg~gr~g~~~~~~~~~~~P--D----i~t~sK~l 238 (382)
T PLN00144 166 GKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEA-GALLVFDEVQCGLGRTGYLWAHEAYGVEP--D----IMTLAKPL 238 (382)
T ss_pred CCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCccchHhhhhhcCCCC--C----EEEecccc
Confidence 5666666444889553 33556699999999999 9999999999987655532111 233332 2 88899999
Q ss_pred CccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCC--ChHHHHHHHHHHHHHHHHHHHHhcCCCCCe
Q 012095 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA--GGEVVSKMVKAFRERRDFLVKSFGELEGVK 382 (471)
Q Consensus 305 g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~ 382 (471)
+ +|+|+||+++++++++.+.......+++.+++++.++.+.|+.-.. ..+++.++.+.+ ++.+.+.+.+.|.+.
T Consensus 239 ~-~G~pig~v~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l---~~~l~~~~~~~~~~~ 314 (382)
T PLN00144 239 A-GGLPIGAVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYL---RELLRRKLGGNPHVK 314 (382)
T ss_pred c-CCcceEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHH---HHHHHHHHhhCCCce
Confidence 8 9999999999999998886544556778899999999966653110 123344444444 344445555554332
Q ss_pred eeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHH
Q 012095 383 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKK 460 (471)
Q Consensus 383 ~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~ 460 (471)
-+. ..|+++|+.+.. +...+++.++++ ||.+.|+. ..+.||++++. +++++++++++|.+
T Consensus 315 ~vr-g~G~~~~l~l~~-------------~~~~~~~~~~~~-Gv~i~~~~---~~~~lrl~p~~~~~~~~i~~~~~~l~~ 376 (382)
T PLN00144 315 EVR-GVGLLVGIQLDV-------------PAGPLVDACRDS-GLLVLTAG---KGDVVRLVPPLVISEAELEQAVEILAD 376 (382)
T ss_pred eee-cCceEEEEEecC-------------ccHHHHHHHHHC-CeEEeecC---CCCEEEEeCCCccCHHHHHHHHHHHHH
Confidence 222 378889999832 456788888765 99999873 24789999986 88999999999999
Q ss_pred HHHhh
Q 012095 461 GLLTL 465 (471)
Q Consensus 461 ~l~~~ 465 (471)
++.++
T Consensus 377 ~l~~~ 381 (382)
T PLN00144 377 CLPAL 381 (382)
T ss_pred HHHhc
Confidence 98764
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-24 Score=214.19 Aligned_cols=249 Identities=16% Similarity=0.204 Sum_probs=175.2
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcC--CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREG--FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 173 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~ 173 (471)
+.|.++.+.... .+..+.+.... ...+ ..+| +.+-..+|++.+++++ |. +..+++++++.++..++.
T Consensus 30 ~pi~~~~~~~~~-~~~~~~~~~~~-~~~~~~y~r~-~~p~~~~Le~~lA~l~----G~----~~~~~~~sG~~Ai~~~l~ 98 (398)
T PRK07504 30 EALFLTQGFVYD-TAEAAEARFKG-EDPGFIYSRY-SNPTVDMFEKRMCALE----GA----EDARATASGMAAVTAAIL 98 (398)
T ss_pred CCeECCCCccCC-CHHHHHHHhcc-CcCCceeecC-CCchHHHHHHHHHHHh----CC----CeeeEecCHHHHHHHHHH
Confidence 347777776432 34333322111 0111 2334 4455678888888875 32 233456677888888888
Q ss_pred HhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHH
Q 012095 174 AVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNL 249 (471)
Q Consensus 174 ~l~~~gd~Vlv~~p~y~~~~~~~----~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~ 249 (471)
+++++||+|++++|.|..+...+ ...|++++.++. +|++++++++++++|+|++++|+||||.+++
T Consensus 99 ~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~-------~d~e~l~~ai~~~tklV~lesp~NptG~v~d--- 168 (398)
T PRK07504 99 CQVKAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDG-------LDLDNWEKAVRPNTKVFFLESPTNPTLEVID--- 168 (398)
T ss_pred HHhCCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEECC-------CCHHHHHHhcCcCceEEEEECCCCCCcEecC---
Confidence 88999999999999999765443 457888888851 6999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhhe-eeEcCHHHHH-HHHHH
Q 012095 250 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLG-YIAGPKHFVA-ACNKI 327 (471)
Q Consensus 250 l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G-~v~~~~~~i~-~l~~~ 327 (471)
+++|.++|+++ ++++|+|++|....+. .+ .. .+..+++.|+||.++.+|+|+| +++++++++. .+...
T Consensus 169 l~~I~~la~~~-gi~lvvD~a~a~~~~~----~~-~~----~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~ 238 (398)
T PRK07504 169 IAAVAKIANQA-GAKLVVDNVFATPLFQ----KP-LE----LGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDY 238 (398)
T ss_pred HHHHHHHHHHc-CCEEEEECCccccccC----Cc-hh----hCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHH
Confidence 88999999999 9999999999864331 11 11 2445899999999988999996 6777777665 35444
Q ss_pred HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCe
Q 012095 328 QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 382 (471)
Q Consensus 328 ~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~ 382 (471)
......+++++.+.++...|+ .+....++..++...+.+.|++.|++.
T Consensus 239 ~~~~g~~~s~~~A~~~l~~L~-------tl~~R~~~~~~na~~la~~L~~~p~v~ 286 (398)
T PRK07504 239 FRHTGPSLSPFNAWTLLKGLE-------TLPVRVRQQTESAAAIADFLAGHPKVA 286 (398)
T ss_pred HHHhCCCCCHHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 444555566665555444443 355556666678888888888876653
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-23 Score=208.94 Aligned_cols=306 Identities=21% Similarity=0.305 Sum_probs=206.7
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCC
Q 012095 110 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPF 188 (471)
Q Consensus 110 p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~ 188 (471)
.+...+++.+++..+.. + |...+++++++++++.+| .+++++|+|+++++..++.++ ++|||+|+++.++
T Consensus 10 ~~~e~~a~~~~~~~~~~-~----~~g~~~~~~e~~la~~~g----~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t 80 (376)
T TIGR02379 10 TGQELEYIAEAISEGKL-S----GDGPFSRRCETWLENRTG----TKKALLTPSCTAALEMAALLLDIQPGDEVIMPSYT 80 (376)
T ss_pred CHHHHHHHHHHHHcCCc-c----CCcHHHHHHHHHHHHHhC----CCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCC
Confidence 35557788888766432 2 223577777777777655 368999999999999988887 7999999999999
Q ss_pred CCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEc
Q 012095 189 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 268 (471)
Q Consensus 189 y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~D 268 (471)
|..+...+...|++++.+++++ +++.+|++++++++++++|+|+ |+||+|...+ +++|.++|++| +++||+|
T Consensus 81 ~~~~~~~~~~~G~~~v~vd~d~-~~~~~d~~~le~~i~~~tk~Ii---p~~~~G~~~d---~~~I~~la~~~-~i~vIeD 152 (376)
T TIGR02379 81 FVSTANAFVLRGAKIVFVDIRP-DTMNIDETLIESAITHRTKAIV---PVHYAGVACD---MDTIMALANKH-QLFVIED 152 (376)
T ss_pred cHHHHHHHHHcCCEEEEEecCC-CcCCCCHHHHHHhcCcCceEEE---EeCCCCCccC---HHHHHHHHHHC-CCEEEEE
Confidence 9999999999999999999985 4588999999999998999886 6788999998 88999999999 9999999
Q ss_pred cCCCccc-cCCCCccccccCCCCCCceEEEecCC----cccCccchhheeeEcC-HHHHHHHHHHHhcc-----------
Q 012095 269 EIYEHII-YAPATHTSFASLPGMWERTLTVNGFS----KAFAMTGWRLGYIAGP-KHFVAACNKIQSQF----------- 331 (471)
Q Consensus 269 e~y~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~S----K~~g~~G~R~G~v~~~-~~~i~~l~~~~~~~----------- 331 (471)
++|+.+. +++....+ + ..+++|| |.+. +|.+.|+++++ +++.++++.++...
T Consensus 153 aa~~~g~~~~~~~~g~---~-------~~~~~fSf~~~K~l~-~g~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 221 (376)
T TIGR02379 153 AAQGVMSTYKGRALGS---I-------GHLGTFSFHETKNYT-SGGEGGALLINDQAFIERAEIIREKGTNRSQFFRGEV 221 (376)
T ss_pred CccccCCccCCcccCC---C-------CCEEEEeCCCCCcCc-ccCCceEEEECCHHHHHHHHHHHHhCCCCccccccCC
Confidence 9998764 44432111 1 1233444 8885 78789998775 78888887665421
Q ss_pred ----------cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCC--C-CeeeC-CCc---c-eEEe
Q 012095 332 ----------TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE--G-VKMSE-PQG---A-FYLF 393 (471)
Q Consensus 332 ----------~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~--g-~~~~~-p~~---g-~~~~ 393 (471)
++-++.+....+...|+ .+++..+..++..++..+.|.+++ + +.... +.+ . ++.+
T Consensus 222 ~~~~~~~~g~n~~~~~~~Aa~g~~qL~-------~l~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (376)
T TIGR02379 222 DKYTWRDIGSSYLPSELQAAYLWAQLE-------QADRINQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAHMFY 294 (376)
T ss_pred CcceeeeecccCCccHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeEEEE
Confidence 11122233222222232 344444444444444555555542 2 22210 111 2 2235
Q ss_pred EecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC----C------CCC------------CCcEEEEeec--CHH
Q 012095 394 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD----A------FGD------------DTCIRISYAA--SLT 449 (471)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~----~------f~~------------~~~iRis~~~--~~e 449 (471)
+.++.. .+..++.+.|.++ ||.+.++. . +.. ...+.|-+.. +++
T Consensus 295 i~~~~~-----------~~r~~l~~~L~~~-gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~ 362 (376)
T TIGR02379 295 IKLKDE-----------DDRNELIKYLKEQ-EIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKE 362 (376)
T ss_pred EEECCc-----------CCHHHHHHHHHHC-CCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHH
Confidence 666532 1567888887765 89876432 1 100 1235555544 889
Q ss_pred HHHHHHHHHHHHH
Q 012095 450 TLQAAVERIKKGL 462 (471)
Q Consensus 450 ~i~~~~~~l~~~l 462 (471)
+++..++.|++++
T Consensus 363 ~~~~i~~~i~~~~ 375 (376)
T TIGR02379 363 DQARVIQTICDYL 375 (376)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.4e-24 Score=213.60 Aligned_cols=218 Identities=16% Similarity=0.182 Sum_probs=165.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChH----HHHHHcCCEEEE
Q 012095 130 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVI 205 (471)
Q Consensus 130 ~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~G~~~~~ 205 (471)
+.+...+|++.+++++ | .+..++++++++++..++.++++|||+|+++.|.|.... ..++..|++++.
T Consensus 63 ~~p~~~~le~~lA~l~----g----~~~~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~ 134 (403)
T PRK07503 63 SNPTLALLEQRMASLE----G----GEAAVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRH 134 (403)
T ss_pred CCchHHHHHHHHHHHh----C----CCcEEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCEEEEE
Confidence 4455678888888875 3 234566667788999999999999999999999997643 345678999998
Q ss_pred ecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccc
Q 012095 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 285 (471)
Q Consensus 206 v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~ 285 (471)
++.+ |++.+++++++++|+|++++|+||||.+.+ +++|+++|+++ |++||+|++|...... .++
T Consensus 135 vd~~-------d~~~l~~~i~~~tklV~le~p~NPtG~~~d---i~~I~~la~~~-gi~lIvD~a~a~~~~~----~~l- 198 (403)
T PRK07503 135 VDLT-------DPAALKAAISDKTRMVYFETPANPNMRLVD---IAAVAEIAHGA-GAKVVVDNTYCTPYLQ----RPL- 198 (403)
T ss_pred eCCC-------CHHHHHHhcCccCcEEEEeCCCCCCCeeeC---HHHHHHHHHHc-CCEEEEECCCcccccC----Cch-
Confidence 8762 789999999889999999999999999999 88999999999 9999999999864221 111
Q ss_pred cCCCCCCceEEEecCCcccCccc-hhheeeEcCHHHHHHHHHH--HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHH
Q 012095 286 SLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI--QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 362 (471)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~g~~G-~R~G~v~~~~~~i~~l~~~--~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~ 362 (471)
. .+..+++.|+||.++.+| .|.||++++++++++++.. +...+.+++++.+..+...|+ .+....+
T Consensus 199 ~----~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~-------tl~~r~~ 267 (403)
T PRK07503 199 E----LGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMRGLK-------TLALRMD 267 (403)
T ss_pred h----hCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhhHHhCcCCCCCHHHHHHHHcCcc-------hHHHHHH
Confidence 1 233489999999998655 7789999999998888743 444556677776655444333 3444455
Q ss_pred HHHHHHHHHHHHhcCCCCCe
Q 012095 363 AFRERRDFLVKSFGELEGVK 382 (471)
Q Consensus 363 ~~~~~r~~l~~~L~~~~g~~ 382 (471)
+..++...+.+.|++.|+++
T Consensus 268 ~~~~na~~~a~~L~~~p~v~ 287 (403)
T PRK07503 268 RHCASAQAVAEWLARHPAVE 287 (403)
T ss_pred HHHHHHHHHHHHHHhCCCcc
Confidence 55677777888888776654
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-24 Score=213.94 Aligned_cols=222 Identities=15% Similarity=0.204 Sum_probs=170.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCC----hHHHHHHcCC
Q 012095 126 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS----YPEMARIADA 201 (471)
Q Consensus 126 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~----~~~~~~~~G~ 201 (471)
.+| +++...+|++.++++. | .++.+++++++.++..++.+++++||+|+++...|.+ +...++..|+
T Consensus 65 ~r~-~~p~~~~le~~lA~l~----g----~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~ 135 (403)
T PRK07810 65 SRY-GNPTVSMFEERLRLIE----G----AEACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGV 135 (403)
T ss_pred eCC-CCchHHHHHHHHHHHh----C----CCcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCc
Confidence 344 4455677888888775 3 3477788888888988998999999999998866643 3456677899
Q ss_pred EEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCc
Q 012095 202 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 281 (471)
Q Consensus 202 ~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~ 281 (471)
+++.++. .|++++++++++++++|++++|+||||.+.+ +++|+++|+++ ++++|+|++|....+..
T Consensus 136 ~v~~vd~-------~d~~~l~~ai~~~tklV~~esp~Nptg~v~d---l~~I~~la~~~-g~~vivD~a~a~~~~~~--- 201 (403)
T PRK07810 136 ETVFVDG-------EDLSQWEEALSVPTQAVFFETPSNPMQSLVD---IAAVSELAHAA-GAKVVLDNVFATPLLQR--- 201 (403)
T ss_pred EEEEECC-------CCHHHHHHhcCcCceEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCCccccCC---
Confidence 9999874 2899999999999999999999999999998 99999999999 99999999998643321
Q ss_pred cccccCCCCCCceEEEecCCcccCccchhh-eeeEcCHHHHH-HHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHH
Q 012095 282 TSFASLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVA-ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 359 (471)
Q Consensus 282 ~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~-G~v~~~~~~i~-~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~ 359 (471)
++ . .+..+++.|++|.++..|+++ ||++++++.+. .++........+++++.++++...|+. +..
T Consensus 202 -~~-~----~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~t-------l~~ 268 (403)
T PRK07810 202 -GL-P----LGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVLLKGLET-------LAL 268 (403)
T ss_pred -hh-h----cCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCc-------HHH
Confidence 11 1 234589999999998789897 88888887665 455555556667888887776665553 555
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCee
Q 012095 360 MVKAFRERRDFLVKSFGELEGVKM 383 (471)
Q Consensus 360 ~~~~~~~~r~~l~~~L~~~~g~~~ 383 (471)
..++..++...+.+.|++.|++..
T Consensus 269 R~~~~~~~a~~~a~~L~~~p~v~~ 292 (403)
T PRK07810 269 RVRHSNASALRIAEFLEGHPAVRW 292 (403)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccE
Confidence 666667777777888888777643
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=211.00 Aligned_cols=218 Identities=16% Similarity=0.199 Sum_probs=170.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH----HHHHcCCEEEE
Q 012095 130 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVI 205 (471)
Q Consensus 130 ~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~G~~~~~ 205 (471)
+.+...+|++.++++. | .++.++++++++++..++.+++++||.|+++.+.|.+... .++..|++++.
T Consensus 38 ~~p~~~~le~~la~l~----g----~~~a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~ 109 (369)
T cd00614 38 GNPTVDALEKKLAALE----G----GEAALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTF 109 (369)
T ss_pred CChhHHHHHHHHHHHH----C----CCCEEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCeEEEE
Confidence 4455667777777765 3 2467778888999999999999999999999999988664 34577899888
Q ss_pred ecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccc
Q 012095 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 285 (471)
Q Consensus 206 v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~ 285 (471)
++.+ |++++++++++++++|++.+|+||+|.+.+ +++|+++|++| |+++|+|++|....+. .+ .
T Consensus 110 v~~~-------d~~~l~~~i~~~~~~v~~e~~~np~g~~~d---l~~i~~la~~~-g~~livD~t~~~~~~~----~~-~ 173 (369)
T cd00614 110 VDPD-------DPEALEAAIKPETKLVYVESPTNPTLKVVD---IEAIAELAHEH-GALLVVDNTFATPYLQ----RP-L 173 (369)
T ss_pred eCCC-------CHHHHHHhcCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCcchhcC----Ch-h
Confidence 8753 689999999889999999999999999999 88999999999 9999999999764321 11 1
Q ss_pred cCCCCCCceEEEecCCcccCccc-hhheeeEcCH-HHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHH
Q 012095 286 SLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPK-HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (471)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~g~~G-~R~G~v~~~~-~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~ 363 (471)
. .+..+++.|+||.++.+| .+.||+++++ ++++++......+..+++++.+.++...|+ .+....++
T Consensus 174 ~----~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~-------tl~~r~~~ 242 (369)
T cd00614 174 E----LGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLK-------TLPLRMER 242 (369)
T ss_pred h----hCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCC-------CHHHHHHH
Confidence 1 244589999999997555 7889999987 899998887766666777776655544443 24445667
Q ss_pred HHHHHHHHHHHhcCCCCCe
Q 012095 364 FRERRDFLVKSFGELEGVK 382 (471)
Q Consensus 364 ~~~~r~~l~~~L~~~~g~~ 382 (471)
..+++..+.+.|++.|++.
T Consensus 243 ~~~na~~la~~L~~~~~v~ 261 (369)
T cd00614 243 HSENALKVAEFLEKHPKVE 261 (369)
T ss_pred HHHHHHHHHHHHHcCCCcc
Confidence 7888888999999887653
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-23 Score=209.84 Aligned_cols=218 Identities=13% Similarity=0.174 Sum_probs=164.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChH----HHHHHcCCEEEE
Q 012095 130 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVI 205 (471)
Q Consensus 130 ~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~G~~~~~ 205 (471)
+++...+|++.+++++ | .+..++++++++++..++.+++.+||+|+++.|.|.... ..+...|++++.
T Consensus 57 ~~p~~~~le~~lA~l~----g----~~~av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~ 128 (391)
T TIGR01328 57 GNPTVSNLEGRIAFLE----G----TEAAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQVDF 128 (391)
T ss_pred CCchHHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCeEEEE
Confidence 4445677888888886 3 234677888888999999999999999999999887544 345568999988
Q ss_pred ecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccc
Q 012095 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 285 (471)
Q Consensus 206 v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~ 285 (471)
++++ |++++++++++++++|++++|+||||.+.+ +++|.++|+++ ++++|+|++|...... .++
T Consensus 129 vd~~-------d~e~l~~~i~~~tklV~le~p~Np~G~v~d---l~~I~~la~~~-gi~livD~a~a~~~~~----~~~- 192 (391)
T TIGR01328 129 INMA-------IPEEVKAHIKDNTKIVYFETPANPTMKLID---MERVCRDAHSQ-GVKVIVDNTFATPMLT----NPV- 192 (391)
T ss_pred ECCC-------CHHHHHHhhccCCeEEEEECCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCCchhccC----Cch-
Confidence 8763 789999999989999999999999999999 88999999999 9999999999853321 111
Q ss_pred cCCCCCCceEEEecCCcccCccchh-heeeEcCHHHHHHHHHHHh--cccCCCChHHHHHHHHHHhccCCChHHHHHHHH
Q 012095 286 SLPGMWERTLTVNGFSKAFAMTGWR-LGYIAGPKHFVAACNKIQS--QFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 362 (471)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~g~~G~R-~G~v~~~~~~i~~l~~~~~--~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~ 362 (471)
. .+..+++.|+||.+|.+|.+ .|++++++++++.++.... ..+...+++...++...|+ .+...++
T Consensus 193 ~----~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~-------tl~~r~~ 261 (391)
T TIGR01328 193 A----LGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILRGLK-------TLNIRMK 261 (391)
T ss_pred h----cCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcC-------cHHHHHH
Confidence 1 23348899999999988877 4788889999988875432 2233455555444443332 2445566
Q ss_pred HHHHHHHHHHHHhcCCCCCe
Q 012095 363 AFRERRDFLVKSFGELEGVK 382 (471)
Q Consensus 363 ~~~~~r~~l~~~L~~~~g~~ 382 (471)
+..++...+.+.|++.|+++
T Consensus 262 ~~~~na~~la~~L~~~p~v~ 281 (391)
T TIGR01328 262 RHSENAMKVAEYLKSHPAVE 281 (391)
T ss_pred HHHHHHHHHHHHHHhCCCcc
Confidence 67778888888888877654
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-23 Score=213.85 Aligned_cols=359 Identities=18% Similarity=0.146 Sum_probs=240.9
Q ss_pred HHHHHHHHHhcCC--CeEEcCCCCCCCCChHHHHHHHHHHH-HcCCCCC---CCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 012095 83 ITDQATALAQAGV--SVIRLAAGEPDFDTPVLIAEAGINAI-REGFTRY---TPNAGTLELRSAICHKLKEENGLSYTPD 156 (471)
Q Consensus 83 ~~~~~~~~~~~g~--~~i~l~~g~~~~~~p~~v~~a~~~~~-~~~~~~Y---~~~~G~~~lr~~ia~~~~~~~g~~~~~~ 156 (471)
+.....++.++.. ..-.++.|.+++..|+.+.+++.+.. ..+.+.| +..+|..+++..+.+++.+.+|++ ..
T Consensus 54 ~~~~~~~l~~~n~~~~~~~~g~G~~~~~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~--~~ 131 (481)
T PRK04366 54 VVRHYTRLSQKNYGVDTGFYPLGSCTMKYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMD--AV 131 (481)
T ss_pred HHHHHHHHHhcCCCCCcceecCcccCCCCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCC--ce
Confidence 3334444444332 22448889999988999988888752 2345677 346799999999999999999963 44
Q ss_pred cEEEeCChHHHHHHH--HH-HhcCCCC----eEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCC
Q 012095 157 QILVSNGAKQSILQA--VL-AVCSPGD----EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKS 229 (471)
Q Consensus 157 ~i~it~G~~~al~~~--~~-~l~~~gd----~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~ 229 (471)
.+..++|+++.+..+ ++ .++++|| +|++++|.|++|...++..|++++.++++ .++.+|+++|++++++++
T Consensus 132 ~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~--~~~~~D~e~L~~~i~~~t 209 (481)
T PRK04366 132 TLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPSN--EDGLVDLEALKAAVGEDT 209 (481)
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHHHHHHcCCEEEEeecC--CCCCcCHHHHHhhcccCC
Confidence 555666766665533 22 3457776 99999999999999999999999999985 346799999999999899
Q ss_pred cEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCcc--
Q 012095 230 RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT-- 307 (471)
Q Consensus 230 ~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~-- 307 (471)
++|++++|+ |||.. ..++++|+++|+++ ++++++|.++..... +. .. ++..+-.++++|..|.++.|
T Consensus 210 ~~V~v~~Pn-~tG~~--~~dl~eI~~~a~~~-gal~iVD~a~~~~~~-g~--~~----~~~~GaD~~~~~~hK~l~~P~g 278 (481)
T PRK04366 210 AALMLTNPN-TLGLF--ERNILEIAEIVHEA-GGLLYYDGANLNAIL-GK--AR----PGDMGFDVVHLNLHKTFSTPHG 278 (481)
T ss_pred eEEEEeCCC-Ccccc--chHHHHHHHHHHHc-CCEEEEEecChhhhc-cc--CC----ccccCCCEEEEechhhcCCCCC
Confidence 999999998 99964 34599999999999 999999999853211 11 01 12235568999999998744
Q ss_pred --chhheeeEcCHHHHHHHHHH-------------------HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 012095 308 --GWRLGYIAGPKHFVAACNKI-------------------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366 (471)
Q Consensus 308 --G~R~G~v~~~~~~i~~l~~~-------------------~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~ 366 (471)
|--+|++.+.+++.+.+... ++.-.++.+.....++..++..- ..+.+++..++..+
T Consensus 279 ~Ggp~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~--G~~Gl~~~a~~~~~ 356 (481)
T PRK04366 279 GGGPGSGPVGVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSL--GAEGLREVSEDAVL 356 (481)
T ss_pred CCCCCeeeeeehhhhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 44578888888777665200 00001111222223333333321 24556676677777
Q ss_pred HHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC--CCCCcEEEEe
Q 012095 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF--GDDTCIRISY 444 (471)
Q Consensus 367 ~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f--~~~~~iRis~ 444 (471)
+.+++.+.|.++.++.+..+.-.- +.++.+.. ...+ .+..++.++|.++ ||.+.. ..+ ...+.+|+++
T Consensus 357 ~a~~l~~~L~~~~~~~~~~~~~~~-~~~~~~~~---~~~g----~~~~~v~~~L~~~-Gi~~~~-~~~p~~~~~~l~is~ 426 (481)
T PRK04366 357 NANYLKARLKDIYDLPYDRPCMHE-FVLSGKKL---KETG----VRTLDIAKRLLDY-GFHPPT-IYFPLIVPEALMIEP 426 (481)
T ss_pred HHHHHHHHhHhhCcccCCCCeeEE-EEEECccc---cccC----CCHHHHHHHHHHC-CccCCc-cccccccCCeEEEcc
Confidence 888899998876333321111111 22232210 0001 1678899998876 887542 222 1256899999
Q ss_pred ec--CHHHHHHHHHHHHHHHHhhCCC
Q 012095 445 AA--SLTTLQAAVERIKKGLLTLRPG 468 (471)
Q Consensus 445 ~~--~~e~i~~~~~~l~~~l~~~~~~ 468 (471)
+. ++++|+++++.|+++.++....
T Consensus 427 ~e~~t~edid~l~~~l~~i~~~~~~~ 452 (481)
T PRK04366 427 TETESKETLDAFIAAMKQIAEEAKEN 452 (481)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 75 8999999999999998876544
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=213.41 Aligned_cols=354 Identities=14% Similarity=0.066 Sum_probs=220.7
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+.+||+..|. ..++. ++.+.+|+.+++.+..+ +.......+.+..+++.+.+..+. -..+.+++++++++++
T Consensus 30 ~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~~-~~~~~~~~~~~~~la~~l~~~~p~-~~~~~v~f~~sGseA~ 107 (420)
T TIGR00700 30 VDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTH-TCFMVTPYEGYVALAEKLNRIAPG-SGPKKSVFFNSGAEAV 107 (420)
T ss_pred CCCCEEEECccCHHhccCCCCCHHHHHHHHHHHHhccC-ccccccCChHHHHHHHHHHHhCCC-CCCCEEEEeCCcHHHH
Confidence 3688899998886 33343 68899999999876321 111112234445566666544321 1235899999999999
Q ss_pred HHHHHHhcC-CC-CeEEEcCCCCCChHHHHHHc-CC-------------EEEEecCCCC---------CCCcCCHHHHHh
Q 012095 169 LQAVLAVCS-PG-DEVIIPAPFWVSYPEMARIA-DA-------------TPVILPTRIS---------ENFLLDPKVLES 223 (471)
Q Consensus 169 ~~~~~~l~~-~g-d~Vlv~~p~y~~~~~~~~~~-G~-------------~~~~v~~~~~---------~~~~ld~e~l~~ 223 (471)
..+++.... .| ..|+....+|++....+... |- .+..+|.... ..+.-+++.+++
T Consensus 108 e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (420)
T TIGR00700 108 ENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARA 187 (420)
T ss_pred HHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHH
Confidence 988886421 23 56888888888876443332 11 1122222100 001112456666
Q ss_pred hhc-----cCCcEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEE
Q 012095 224 KLT-----EKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTV 297 (471)
Q Consensus 224 ~l~-----~~~~~i~i~~p~NPtG~~~-~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~ 297 (471)
.+. ++..+|++...+.-+|..+ +++.+++|.++|++| ++++|+||+|.++.+.+. ...+... +....+
T Consensus 188 ~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~-gillI~DEV~tg~gr~g~-~~a~~~~----~~~pDi 261 (420)
T TIGR00700 188 IFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREH-GIVFIADEVQTGFARTGA-MFACEHE----GPEPDL 261 (420)
T ss_pred HHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEEecccCCcccch-hHHHhhc----CCCCCE
Confidence 652 2345555544465678755 555699999999999 999999999998866553 1222222 112225
Q ss_pred ecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC
Q 012095 298 NGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377 (471)
Q Consensus 298 ~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 377 (471)
.+|||.++ +|+|+||+++++++++.+.......+++.++++|.++.++|+.-. .....+.+.+.-+..++.+.+...+
T Consensus 262 ~~lsK~l~-~G~pig~v~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~-~~~~~~~~~~~g~~l~~~L~~l~~~ 339 (420)
T TIGR00700 262 ITTAKSLA-DGLPLSGVTGRAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIE-SEGLIERARQIGRLVTDRLTTLKAV 339 (420)
T ss_pred EEeecccc-CCcceEEEEecHHHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhh
Confidence 56999998 999999999999999888655555678899999999988876311 1222333333333333333333334
Q ss_pred CCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHH
Q 012095 378 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAV 455 (471)
Q Consensus 378 ~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~ 455 (471)
++.+....+. |.++|+.+.+. .. ..........+.+.+++ .||.+.|++.|+ ++|||+++. ++++|++++
T Consensus 340 ~~~~~~vrg~-G~~~~i~~~~~-~~---~~~~~~~~~~l~~~~~~-~Gv~i~p~~~f~--~~lRl~p~l~~~~~~l~~~~ 411 (420)
T TIGR00700 340 DPRIGDVRGL-GAMIAVELVDP-GT---TEPDAGLAERIATAAHA-AGLLLLTCGMFG--NIIRFLPPLTIGDELLSEGL 411 (420)
T ss_pred CCCEEEeecc-ceEEEEEEecC-CC---CCccHHHHHHHHHHHHH-CCeEEeccCCCC--CEEEEECCCCcCHHHHHHHH
Confidence 4445555566 44567666321 00 00000013455555555 599999988774 799999864 899999999
Q ss_pred HHHHHHHH
Q 012095 456 ERIKKGLL 463 (471)
Q Consensus 456 ~~l~~~l~ 463 (471)
++|.+++.
T Consensus 412 ~~l~~~l~ 419 (420)
T TIGR00700 412 DILCAILA 419 (420)
T ss_pred HHHHHHhh
Confidence 99999874
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-23 Score=207.22 Aligned_cols=220 Identities=15% Similarity=0.170 Sum_probs=169.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH----HHHcCC
Q 012095 126 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADA 201 (471)
Q Consensus 126 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~G~ 201 (471)
.+| +++....|++.++++. ..+++++++|+++++..++.+++++||.|+++.|+|.+.... ....|.
T Consensus 48 ~R~-~npt~~~Le~~lA~le--------g~e~ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi 118 (388)
T PRK08861 48 TRS-GNPNRGLLEQTLSELE--------SGKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDF 118 (388)
T ss_pred cCC-CCchHHHHHHHHHHHh--------CCCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCe
Confidence 344 5556778888888886 357999999999999999999999999999999999864432 233567
Q ss_pred EEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCc
Q 012095 202 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 281 (471)
Q Consensus 202 ~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~ 281 (471)
+++.++. .|++++++++++++++|++++|+||||.+++ +++|.++|+++ ++++|+|++|....+.
T Consensus 119 ~v~~vd~-------~d~e~l~~~i~~~tklV~lesP~NPtG~v~d---l~~I~~la~~~-gi~vIvDea~~~~~~~---- 183 (388)
T PRK08861 119 KVQFVDQ-------SDAAALDAALAKKPKLILLETPSNPLVRVVD---IAELCQKAKAV-GALVAVDNTFLTPVLQ---- 183 (388)
T ss_pred EEEEECC-------CCHHHHHHhcCcCCeEEEEECCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCccccccC----
Confidence 8777752 4899999999889999999999999999999 78899999999 9999999999864321
Q ss_pred cccccCCCCCCceEEEecCCcccCc-cchhheeeEc-CHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHH
Q 012095 282 TSFASLPGMWERTLTVNGFSKAFAM-TGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 359 (471)
Q Consensus 282 ~~~~~~~~~~~~~i~~~S~SK~~g~-~G~R~G~v~~-~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~ 359 (471)
.+ ..+ +-.+++.|++|.++- .+.+.|++++ ++++.+.++..+...+.+++++....+..-|+. +.-
T Consensus 184 ~p-l~~----GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~T-------l~l 251 (388)
T PRK08861 184 KP-LEL----GADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIRT-------LGA 251 (388)
T ss_pred CC-ccc----CCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHHhcCCC-------HHH
Confidence 11 122 334899999999852 3467899987 457778788777777777788875544444432 455
Q ss_pred HHHHHHHHHHHHHHHhcCCCCC
Q 012095 360 MVKAFRERRDFLVKSFGELEGV 381 (471)
Q Consensus 360 ~~~~~~~~r~~l~~~L~~~~g~ 381 (471)
..++..++...+.+.|++.|.+
T Consensus 252 R~~~~~~~a~~~a~~L~~~p~v 273 (388)
T PRK08861 252 RMRVHEESAQQILAYLQTQSLV 273 (388)
T ss_pred HHHHHHHHHHHHHHHHHhCCCe
Confidence 5666677777888888887655
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-23 Score=207.23 Aligned_cols=214 Identities=14% Similarity=0.181 Sum_probs=163.1
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCCh----HHHHHHcCCEEEEecCC
Q 012095 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSY----PEMARIADATPVILPTR 209 (471)
Q Consensus 134 ~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~----~~~~~~~G~~~~~v~~~ 209 (471)
..+|++.++++ .| .+++++ ++++++++..++.++++|||.|+++.|+|... ...++..|.+++.++.
T Consensus 62 ~~~Le~~lA~l----~g---~~~~v~-~~sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~- 132 (405)
T PRK08776 62 RDLLGEALAEL----EG---GAGGVI-TATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADL- 132 (405)
T ss_pred HHHHHHHHHHH----hC---CCceEE-EcCHHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECC-
Confidence 45566666665 44 234554 55557999999999999999999999999873 3445566888888764
Q ss_pred CCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCC
Q 012095 210 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289 (471)
Q Consensus 210 ~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 289 (471)
.|++++++++++++|+|++++|+||||.+.+ +++|+++|+++ +++||+|++|... ....++ .+
T Consensus 133 ------~d~~~l~~~i~~~tklV~l~~P~NPtG~v~d---l~~I~~la~~~-gi~vIvD~a~a~~----~~~~pl-~~-- 195 (405)
T PRK08776 133 ------TDPRSLADALAQSPKLVLIETPSNPLLRITD---LRFVIEAAHKV-GALTVVDNTFLSP----ALQKPL-EF-- 195 (405)
T ss_pred ------CCHHHHHHhcCcCCeEEEEECCCCCCCccCC---HHHHHHHHHHc-CCEEEEECCCccc----ccCCcc-cc--
Confidence 3889999999889999999999999999987 89999999999 9999999999752 111122 12
Q ss_pred CCCceEEEecCCcccCcc-chhheeeEc-CHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Q 012095 290 MWERTLTVNGFSKAFAMT-GWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367 (471)
Q Consensus 290 ~~~~~i~~~S~SK~~g~~-G~R~G~v~~-~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~ 367 (471)
+..+++.|.+|.++-+ +...|++++ ++++.+++.........+++++.+.++... .+|++...++..++
T Consensus 196 --gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~g-------l~tl~~r~~~~~~n 266 (405)
T PRK08776 196 --GADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRG-------LRTLDARLRVHQEN 266 (405)
T ss_pred --cCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhh-------hCcHHHHHHHHHHH
Confidence 2338999999999644 467899876 577888887766666666777776655533 35677888888889
Q ss_pred HHHHHHHhcCCCCCe
Q 012095 368 RDFLVKSFGELEGVK 382 (471)
Q Consensus 368 r~~l~~~L~~~~g~~ 382 (471)
+..+.+.|++.|.+.
T Consensus 267 a~~la~~L~~~p~v~ 281 (405)
T PRK08776 267 ADAIAALLDGHAAVN 281 (405)
T ss_pred HHHHHHHHHcCCCee
Confidence 999999998876653
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-24 Score=213.15 Aligned_cols=311 Identities=18% Similarity=0.155 Sum_probs=214.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCC---CCCC--CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcC----C
Q 012095 108 DTPVLIAEAGINAIREGFTRYT---PNAG--TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS----P 178 (471)
Q Consensus 108 ~~p~~v~~a~~~~~~~~~~~Y~---~~~G--~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~----~ 178 (471)
++|+.+.+++.+.+.......+ ...+ ..++.+.+.+.+.+.+| .++++|++|+|+++++..++.+++. +
T Consensus 9 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g--~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~ 86 (353)
T TIGR03235 9 PIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALG--ADTEEVIFTSGATESNNLAILGLARAGEQK 86 (353)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 3578899999887754221111 1011 11223344444444456 4678999999999999988888763 5
Q ss_pred C-CeEEEcCCCCCChHHH---HHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHH
Q 012095 179 G-DEVIIPAPFWVSYPEM---ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 254 (471)
Q Consensus 179 g-d~Vlv~~p~y~~~~~~---~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~ 254 (471)
| +.|++....|+++... ++..|++++.++++. ++.+|++++++++++++++|++++++||||.+++ +++|.
T Consensus 87 g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~---~~~I~ 161 (353)
T TIGR03235 87 GKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDE--SGRIDVDELADAIRPDTLLVSIMHVNNETGSIQP---IREIA 161 (353)
T ss_pred CCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCC--CCcCCHHHHHHhCCCCCEEEEEEcccCCceeccC---HHHHH
Confidence 6 7888888777766543 455799999999863 4568999999999888999999999999999999 89999
Q ss_pred HHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHH--HHH-----
Q 012095 255 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC--NKI----- 327 (471)
Q Consensus 255 ~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l--~~~----- 327 (471)
++|+++ ++++++|+++..... ... +. .++..+++.|++|.+|.+| +|+++++++..... ...
T Consensus 162 ~l~~~~-~~~~ivD~a~~~g~~----~~~---~~-~~~~D~~~~s~~K~~gp~g--~g~l~~~~~~~~~~~~~~~~~~~~ 230 (353)
T TIGR03235 162 EVLEAH-EAFFHVDAAQVVGKI----TVD---LS-ADRIDLISCSGHKIYGPKG--IGALVIRKRGKPKAPLKPIMFGGG 230 (353)
T ss_pred HHHHHc-CCEEEEEchhhcCCc----ccc---cc-ccCCCEEEeehhhcCCCCc--eEEEEEccCcccccccCceeeCCC
Confidence 999999 999999999874221 111 11 1344578889999987556 89998887653221 110
Q ss_pred --HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC-cc--eEEeEecCCccCC
Q 012095 328 --QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-GA--FYLFIDFSTYYGS 402 (471)
Q Consensus 328 --~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~-~g--~~~~~~~~~~~~~ 402 (471)
......+++.....++.++++. ....++...++++++++++.+.|.+ +|+++..+. .. ..+.+.++..
T Consensus 231 ~~~~~~~gt~~~~~~~al~~al~~---~~~~~~~~~~~~~~l~~~l~~~l~~-~g~~~~~~~~~~~~~i~~~~~~~~--- 303 (353)
T TIGR03235 231 QERGLRPGTLPVHLIVGMGEAAEI---ARRNAQAWEVKLRAMRNQLRDALQT-LGVKLNGDPAETIPHILNFSIDGV--- 303 (353)
T ss_pred CcCccccCCCChHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHhcc-CCeEEeCCcccccCCEEEEEeCCc---
Confidence 0111233555566666667764 2345778889999999999999988 598876432 21 1233444432
Q ss_pred cccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCC----CcEEEEeecCHHHHHHH
Q 012095 403 EAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD----TCIRISYAASLTTLQAA 454 (471)
Q Consensus 403 ~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~----~~iRis~~~~~e~i~~~ 454 (471)
+..++.+.| ++ +|.+.+|..|+.. .++|.+++.+++++..+
T Consensus 304 ---------~~~~v~~~L-~~-~i~v~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~ 348 (353)
T TIGR03235 304 ---------NSEALIVNL-RA-DAAVSTGSACSSSKYEPSHVLQAMGLDTDRARGA 348 (353)
T ss_pred ---------CHHHHHHHH-hC-CeEEEchhhcCCCCCCCCHHHHHcCCCHHHhCcc
Confidence 567777776 55 8999999988654 37888888876665544
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.8e-25 Score=202.18 Aligned_cols=368 Identities=16% Similarity=0.159 Sum_probs=274.9
Q ss_pred cccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCC--CCCCC---hHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHH
Q 012095 69 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGE--PDFDT---PVLIAEAGINAIRE-GFTRYTPNAGTLELRSAIC 142 (471)
Q Consensus 69 s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~--~~~~~---p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia 142 (471)
-++|..-+|.++..+.+.... +..+..|+|+.|. -+... -+.|++|..+.... ..-.|.|..|++++.+..+
T Consensus 28 ~s~V~maPpDpILGVTeAfk~--D~n~~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~~~ldKEYlpI~Gl~eF~k~sa 105 (427)
T KOG1411|consen 28 WSHVEMAPPDPILGVTEAFKK--DPNPKKINLGVGAYRDDNGKPYVLPSVRKAEQQLASLSLDKEYLPITGLAEFNKLSA 105 (427)
T ss_pred hhcCCCCCCCCcccHHHHHhc--CCCcceeeecccceecCCCCeeeeHHHHHHHHHHhhhcccchhccccchHHHHHHHH
Confidence 346777778888777654432 4566789999998 23333 36677777665542 3467999999999999999
Q ss_pred HHHHHHhCCCCCCCcEE--EeCChHHHHHHHHHHh--cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCH
Q 012095 143 HKLKEENGLSYTPDQIL--VSNGAKQSILQAVLAV--CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDP 218 (471)
Q Consensus 143 ~~~~~~~g~~~~~~~i~--it~G~~~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~ 218 (471)
++.-......+...+|+ -|-++|.++......+ .-++..|.+|+|+|.+...++..+|+.+..+........++|.
T Consensus 106 kLa~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t~gld~ 185 (427)
T KOG1411|consen 106 KLALGDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKTRGLDF 185 (427)
T ss_pred HHhhcCCchhhhccceeEEEeccCcchhhHHHHHHHhhccccceeecCCcccccCccccccCcceeeeeeccccccccch
Confidence 98732222224445554 3456777776544433 3478999999999999999999999999888877666677999
Q ss_pred HHHHhhhccCC-cEEEE--cCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCC--CccccccCCCCCCc
Q 012095 219 KVLESKLTEKS-RLLIL--CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA--THTSFASLPGMWER 293 (471)
Q Consensus 219 e~l~~~l~~~~-~~i~i--~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~ 293 (471)
+.+.+.+.+.+ ..+++ .+.|||||+..+.++|++|.++.++. +.+.+.|-+|..|..+.. ....+.-+..+..+
T Consensus 186 ~g~ledl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k-~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~ 264 (427)
T KOG1411|consen 186 KGMLEDLGEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEK-NLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHE 264 (427)
T ss_pred HHHHHHHhcCCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhc-cccchhhhhhcccccCCchhhHHHHHHHHHcCCc
Confidence 99888776533 23333 55699999999999999999999998 999999999999876532 22333334445678
Q ss_pred eEEEecCCcccCccchhheee--Ec-CHH----HHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHH---HHHHHH
Q 012095 294 TLTVNGFSKAFAMTGWRLGYI--AG-PKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVV---SKMVKA 363 (471)
Q Consensus 294 ~i~~~S~SK~~g~~G~R~G~v--~~-~~~----~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~---~~~~~~ 363 (471)
++++.||.|.+|+.|-|+|.+ ++ +++ +-.+++.+.+++.++||..+..++...|.+..+..+|. .-+.++
T Consensus 265 ~~laQSyAKNMGLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadR 344 (427)
T KOG1411|consen 265 ILLAQSYAKNMGLYGERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVKGMADR 344 (427)
T ss_pred eEeehhhhhhcchhhhccceeEEEecCHHHHHHHHHHHHHHhcccccCCCccchhhhhhccCChHHHHHHHHHHHHHHHh
Confidence 899999999999999999985 33 333 45566778888999999999999999998865556774 556788
Q ss_pred HHHHHHHHHHHhcCC--CC-CeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcE
Q 012095 364 FRERRDFLVKSFGEL--EG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 440 (471)
Q Consensus 364 ~~~~r~~l~~~L~~~--~g-~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~i 440 (471)
+...|+.|.+.|++. ++ |+++..+-|||.|..+. .+.++.|.+++.|++.--.
T Consensus 345 i~~mR~~L~d~L~~~gs~~~W~hI~~QIGMF~fTgl~----------------peQv~~l~ke~~iYmT~dG-------- 400 (427)
T KOG1411|consen 345 IISMRQQLFDALEKEGSPGNWSHITKQIGMFCFTGLN----------------PEQVDWLTKEYHIYLTKDG-------- 400 (427)
T ss_pred hhhhHHHHhHHhhcCCCCccHHHHHHhhheeeecCCC----------------HHHHHHHHhhheeeeccCc--------
Confidence 889999999999874 23 56667788999887653 3567778889899987532
Q ss_pred EEEeec-CHHHHHHHHHHHHHHHH
Q 012095 441 RISYAA-SLTTLQAAVERIKKGLL 463 (471)
Q Consensus 441 Ris~~~-~~e~i~~~~~~l~~~l~ 463 (471)
|||++. +..++..+.++|.++.+
T Consensus 401 RiS~aG~ss~nV~yLa~aih~vtk 424 (427)
T KOG1411|consen 401 RISMAGLSSSNVPYLADAIHAVTK 424 (427)
T ss_pred eEeeccccccCCcccchhhHhHhc
Confidence 899998 66777777777776654
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-23 Score=211.01 Aligned_cols=356 Identities=15% Similarity=0.118 Sum_probs=223.5
Q ss_pred hcCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+.+||+..|.. .++. +|.+.+++.+++.+... .+......+....+++.+.+..+.. ..+.++++++++++.
T Consensus 51 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-~~~~~~~~~~~~~la~~L~~~~p~~-~~~~v~f~~sGseA~ 128 (451)
T PRK06918 51 VDGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIH-TGFNVMMYEPYIELAEKLAALAPGS-FDKKVLFLNSGAEAV 128 (451)
T ss_pred CCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHhccC-ccccccccHHHHHHHHHHHHhCCCC-CCCEEEEcCCcHHHH
Confidence 36888999988863 3444 78899999999876322 1121223456667777776554311 115899999999999
Q ss_pred HHHHHHhcC-CC-CeEEEcCCCCCChHHHHHHc-CC-------------EEEEecCCCC--CCCcCC--------HHHHH
Q 012095 169 LQAVLAVCS-PG-DEVIIPAPFWVSYPEMARIA-DA-------------TPVILPTRIS--ENFLLD--------PKVLE 222 (471)
Q Consensus 169 ~~~~~~l~~-~g-d~Vlv~~p~y~~~~~~~~~~-G~-------------~~~~v~~~~~--~~~~ld--------~e~l~ 222 (471)
..+++.... .| ..|+....+|++....+... |. .+..+|.... ...++. ++.++
T Consensus 129 e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (451)
T PRK06918 129 ENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFK 208 (451)
T ss_pred HHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHH
Confidence 988886531 23 56888888888876544332 21 1222222110 000111 12333
Q ss_pred hhh----ccCCcEEEEcCCCCC-ccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEE
Q 012095 223 SKL----TEKSRLLILCSPSNP-TGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLT 296 (471)
Q Consensus 223 ~~l----~~~~~~i~i~~p~NP-tG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~ 296 (471)
+.+ ..+..+.+|..|-+. .|. ..+++.+++|.++|++| |+++|+||+|.++.+.+. ..++..++...+
T Consensus 209 ~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~-gillI~DEV~tg~gr~g~-~~a~~~~~v~pD---- 282 (451)
T PRK06918 209 NFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEH-GILFVADEIQTGFARTGK-YFAIEHFDVVPD---- 282 (451)
T ss_pred HHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCcCccCc-eehhHhcCCCCC----
Confidence 333 223344555566443 465 45566699999999999 999999999999876553 223333321122
Q ss_pred EecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccC--CChHHHHHHHHHHHHHHHHHHHH
Q 012095 297 VNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGY--AGGEVVSKMVKAFRERRDFLVKS 374 (471)
Q Consensus 297 ~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~--~~~~~~~~~~~~~~~~r~~l~~~ 374 (471)
+.||||.++ +|+|+||+++++++++.+.......+++.++++|.++.++|+.-. ...+++.++.+.+.++.+.+.+
T Consensus 283 i~t~sK~l~-~G~pig~v~~~~~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~l~~- 360 (451)
T PRK06918 283 LITVSKSLG-AGVPISGVIGRKEIMDESAPGELGGTYAGSPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRFEEMKN- 360 (451)
T ss_pred EEeeehhhc-CCCccEEEEEcHHHHhccCCCCcCcCCCcCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh-
Confidence 558999998 999999999999999888655556778899999999888876310 0123344444444433333322
Q ss_pred hcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHH
Q 012095 375 FGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQ 452 (471)
Q Consensus 375 L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~ 452 (471)
+.+.+....+.|+|+.|....+. ..... .......+.+.+++ .||.+.|+..|+ +++|++++. ++++|+
T Consensus 361 --~~~~~~~vrg~G~~~~~~~~~~~-~~~~~---~~~~~~~l~~~~~~-~Gvlv~~~~~~~--~~lrl~p~l~~t~~~id 431 (451)
T PRK06918 361 --KYNCIGDVRGLGAMCAFELVQDR-KTKEP---DKTLTANICKEANK-RGLLLLSAGTYG--NVIRVLMPLVITDEQLE 431 (451)
T ss_pred --hCCCceeeccceeEEEEEEccCC-CcCCC---cHHHHHHHHHHHHH-CCeEEeecCCCC--CEEEEECCCccCHHHHH
Confidence 23333445577888877654211 00000 00123456666665 499999987664 789999864 899999
Q ss_pred HHHHHHHHHHHhhC
Q 012095 453 AAVERIKKGLLTLR 466 (471)
Q Consensus 453 ~~~~~l~~~l~~~~ 466 (471)
+++++|.++++++.
T Consensus 432 ~~l~~l~~~l~~~~ 445 (451)
T PRK06918 432 EGLTIIEESLQACY 445 (451)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998754
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-23 Score=210.14 Aligned_cols=349 Identities=13% Similarity=0.097 Sum_probs=230.0
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+.++|+..|. ..++. ++.+.+++.+++.+... +.......+....+++.+.+..+. -..+.++++++++++.
T Consensus 37 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~-~~~~~~~~~~~~~la~~l~~~~p~-~~~~~~~f~~sGseA~ 114 (421)
T PRK06777 37 VEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTH-TAYQIVPYASYVTLAERINALAPI-DGPAKTAFFTTGAEAV 114 (421)
T ss_pred CCCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhccc-ccccccCChHHHHHHHHHHHhCCC-CCCceEEEeCCcHHHH
Confidence 3688899998886 33443 68899999999876322 111112234455666666544321 1236899999999999
Q ss_pred HHHHHHhc-CCC-CeEEEcCCCCCChHHHHHHc-CCE-------------EEEecCCCCC-C--CcCCHHHHHhhhc---
Q 012095 169 LQAVLAVC-SPG-DEVIIPAPFWVSYPEMARIA-DAT-------------PVILPTRISE-N--FLLDPKVLESKLT--- 226 (471)
Q Consensus 169 ~~~~~~l~-~~g-d~Vlv~~p~y~~~~~~~~~~-G~~-------------~~~v~~~~~~-~--~~ld~e~l~~~l~--- 226 (471)
..+++... -.| ..|+..+.+|++....+... |.. +..++..... + ..-+++.+++.+.
T Consensus 115 e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~ 194 (421)
T PRK06777 115 ENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADI 194 (421)
T ss_pred HHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhcc
Confidence 98888642 133 56888888888876544322 210 1111211100 0 0113566777664
Q ss_pred --cCCcEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcc
Q 012095 227 --EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 303 (471)
Q Consensus 227 --~~~~~i~i~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 303 (471)
++..+|++...++..|. +++++.+++|.++|++| ++++|.||+|.++.+.+. ......+....| +-+|||.
T Consensus 195 ~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEv~tg~gr~g~-~~~~~~~~~~pD----iv~~sK~ 268 (421)
T PRK06777 195 APDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEH-GILLIADEVQTGFARTGK-LFAMEYYDVKPD----LITMAKS 268 (421)
T ss_pred CCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCccCCc-hhhhhhcCCCCC----EEeeehh
Confidence 23456666555777885 68999999999999999 999999999998765553 222222221112 3379999
Q ss_pred cCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCC----C
Q 012095 304 FAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----E 379 (471)
Q Consensus 304 ~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~----~ 379 (471)
++ +|+|+||+++++++++.+.......+++.+++++.++.++|+.. ++ +++.++++++.+++.+.|+++ +
T Consensus 269 l~-~G~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~---~~--~~l~~~~~~~g~~l~~~L~~l~~~~~ 342 (421)
T PRK06777 269 LG-GGMPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVI---AE--EKLCQRALILGAHLVEVLEKAKASCP 342 (421)
T ss_pred hc-CCCceEEEEEcHHHHhccCCCCCCCCCCcCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99 99999999999999988875555567889999999999999741 11 356667777777777777653 4
Q ss_pred CCeeeCCCcceEEe-EecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHH
Q 012095 380 GVKMSEPQGAFYLF-IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVE 456 (471)
Q Consensus 380 g~~~~~p~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~i~~~~~ 456 (471)
.+....+.|.||.+ +..+.. + .....-...+.+.+++ .||.+.|+..|+ +++||++. .++++++++++
T Consensus 343 ~i~~vrg~G~~~~i~~~~~~~-~-----~~~~~~~~~l~~~~~~-~Gv~i~~~~~~g--~~lr~~ppl~i~~~~i~~~~~ 413 (421)
T PRK06777 343 AIVDIRARGSMVAVEFNDPQT-G-----KPSPEFTRQYQRQALE-EGLLLLSCGVHG--NVIRFLYPLTIPDAQFSKALN 413 (421)
T ss_pred CeEEecCceEEEEEEEecCcc-C-----CccHHHHHHHHHHHHh-CCeEEeecCCCC--CEEEEeCCCCCCHHHHHHHHH
Confidence 45556788888754 332211 0 0000012344444555 599999987764 69999986 49999999999
Q ss_pred HHHHHHH
Q 012095 457 RIKKGLL 463 (471)
Q Consensus 457 ~l~~~l~ 463 (471)
+|.+++.
T Consensus 414 ~l~~~l~ 420 (421)
T PRK06777 414 ILTRLLA 420 (421)
T ss_pred HHHHHHh
Confidence 9998874
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.3e-23 Score=206.33 Aligned_cols=218 Identities=12% Similarity=0.109 Sum_probs=162.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHH----HcCCEEEE
Q 012095 130 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IADATPVI 205 (471)
Q Consensus 130 ~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~----~~G~~~~~ 205 (471)
+.+...+|++.++++.+ . +..++++++++++..++.+++++||+|++++|+|......+. ..|++++.
T Consensus 59 ~~p~~~~Le~~lA~~~g-------~-~~~i~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~ 130 (388)
T PRK07811 59 GNPTRTALEEQLAALEG-------G-AYGRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTP 130 (388)
T ss_pred CCccHHHHHHHHHHHhC-------C-CceEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEE
Confidence 56778899999999863 1 223444566899999999999999999999999986544332 25788777
Q ss_pred ecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccc
Q 012095 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 285 (471)
Q Consensus 206 v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~ 285 (471)
++. .|++++++++++++|+|++++|+||||.+.+ +++|+++|+++ +++||+|++|...... .++
T Consensus 131 ~d~-------~d~e~l~~~i~~~tklV~ie~p~NPtg~~~d---l~~I~~la~~~-gi~lIvD~a~a~~~~~----~p~- 194 (388)
T PRK07811 131 VDL-------SDLDAVRAAITPRTKLIWVETPTNPLLSITD---IAALAELAHDA-GAKVVVDNTFASPYLQ----QPL- 194 (388)
T ss_pred eCC-------CCHHHHHHhcCcCCeEEEEECCCCCcceecC---HHHHHHHHHHc-CCEEEEECCCCccccC----Cch-
Confidence 764 3899999999999999999999999999888 99999999999 9999999999864321 111
Q ss_pred cCCCCCCceEEEecCCcccCccc-hhheeeEc-CHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHH
Q 012095 286 SLPGMWERTLTVNGFSKAFAMTG-WRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (471)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~g~~G-~R~G~v~~-~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~ 363 (471)
. .+..+++.|++|.++.+| .+.||+++ ++++.+.+...+.....+.+++....+...|+ .+....++
T Consensus 195 ~----~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~-------tl~~R~~~ 263 (388)
T PRK07811 195 A----LGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLK-------TLAVRMDR 263 (388)
T ss_pred h----hCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccC-------cHHHHHHH
Confidence 1 123499999999997544 46799887 46777777766655555556655443333333 24455566
Q ss_pred HHHHHHHHHHHhcCCCCCe
Q 012095 364 FRERRDFLVKSFGELEGVK 382 (471)
Q Consensus 364 ~~~~r~~l~~~L~~~~g~~ 382 (471)
..++...+.+.|++.|++.
T Consensus 264 ~~~na~~la~~L~~~p~v~ 282 (388)
T PRK07811 264 HSENAEAVAEFLAGHPEVS 282 (388)
T ss_pred HHHHHHHHHHHHHhCCCee
Confidence 6778888888888877653
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-23 Score=213.00 Aligned_cols=350 Identities=15% Similarity=0.198 Sum_probs=227.8
Q ss_pred hcCCCeEEcCCCCCCC--C-ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGEPDF--D-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~~~~--~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+.++|+..|.+.. + .++.+.+++.+++.+....|.+..+..+|.+.+++.+ . ..+.+++++++++++
T Consensus 47 ~dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~la~~L~~~~----~---~~~~v~~~~sGseA~ 119 (426)
T PRK00062 47 VDGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEKGLSFGAPTELEVELAELVIELV----P---SIEMVRMVNSGTEAT 119 (426)
T ss_pred CCCCEEEEcccchhhhhcCCCCHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHHHhC----C---CCCEEEEecCHHHHH
Confidence 3688899999987543 3 4789999999999875544445444555555555543 2 346899999999999
Q ss_pred HHHHHHhcC--CCCeEEEcCCCCCChHHHHHHc-CCE------------EEEecCC-CCCCCcCCHHHHHhhhcc---CC
Q 012095 169 LQAVLAVCS--PGDEVIIPAPFWVSYPEMARIA-DAT------------PVILPTR-ISENFLLDPKVLESKLTE---KS 229 (471)
Q Consensus 169 ~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~-G~~------------~~~v~~~-~~~~~~ld~e~l~~~l~~---~~ 229 (471)
..+++.... .++.|+..+++|+++...+... |.. .+.++.. ..-.+ .|++.+++.+.. ++
T Consensus 120 e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~i~~~~~~~ 198 (426)
T PRK00062 120 MSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPY-NDLEAVEELFEEYGDEI 198 (426)
T ss_pred HHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCC-CCHHHHHHHHHhCCCcE
Confidence 999987543 2578999999999986443322 110 0000000 00001 278899888753 45
Q ss_pred cEEEEcCCCCCcccCCC-HHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccc
Q 012095 230 RLLILCSPSNPTGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 308 (471)
Q Consensus 230 ~~i~i~~p~NPtG~~~~-~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 308 (471)
.+|++......+|.+.+ .+++++|.++|++| ++++|+||+|.++.+++.......... .| +.+|||.++ .|
T Consensus 199 aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~G~r~g~~~~~~~~~~~--pD----i~~~gK~l~-~G 270 (426)
T PRK00062 199 AAVIVEPVAGNMGVVPPKPGFLEGLRELCDEH-GALLIFDEVMTGFRVALGGAQGYYGVT--PD----LTTLGKIIG-GG 270 (426)
T ss_pred EEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeechhccccCCccHHHHhCCC--cc----hHhhhhHhh-CC
Confidence 56666544444887775 88899999999999 999999999998744322111112221 12 568999998 89
Q ss_pred hhheeeEcCHHHHHHHHH---HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCee-e
Q 012095 309 WRLGYIAGPKHFVAACNK---IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-S 384 (471)
Q Consensus 309 ~R~G~v~~~~~~i~~l~~---~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~-~ 384 (471)
|++|++++++++++.+.. .....+++.+++.+.++.++|+.... ++.+++..+.....++.+.+.+.+. ++.. .
T Consensus 271 ~p~ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v 348 (426)
T PRK00062 271 LPVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKE-PGFYEELEALTKRLAEGLKEAAKKA-GIPLTV 348 (426)
T ss_pred CcceeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHc-CCceEE
Confidence 999999999999998852 22334567899999999999875221 2455666666666666666555555 4433 3
Q ss_pred CCCcceEEeEecCCccCCc-ccCCCC-CCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHH
Q 012095 385 EPQGAFYLFIDFSTYYGSE-AEGFGK-IENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGL 462 (471)
Q Consensus 385 ~p~~g~~~~~~~~~~~~~~-~~~~~~-~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l 462 (471)
.+.|.|+.+ .+....... ...... ......+.+.|+++ ||.+.|.. .+.+++++..+++++++++++|.+++
T Consensus 349 rg~G~~~~i-~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~-Gv~v~~~~----~~~~~~~~~~t~~ei~~~~~~l~~~l 422 (426)
T PRK00062 349 NRVGSMFGL-FFTDEPVTNYADAKKSDTERFARFFHAMLDE-GVYLAPSQ----FEAGFVSAAHTDEDIEKTLEAARKAF 422 (426)
T ss_pred EEecceEEE-EEecCCCcchhhhccccHHHHHHHHHHHHHC-CeEeecCC----cCceeeeccCCHHHHHHHHHHHHHHH
Confidence 456666533 332110000 000000 00135678888765 99998843 23578887779999999999999998
Q ss_pred Hhh
Q 012095 463 LTL 465 (471)
Q Consensus 463 ~~~ 465 (471)
+++
T Consensus 423 ~~~ 425 (426)
T PRK00062 423 AAL 425 (426)
T ss_pred Hhh
Confidence 754
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.2e-23 Score=207.70 Aligned_cols=352 Identities=14% Similarity=0.123 Sum_probs=227.3
Q ss_pred hcCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+.+||+..|.. .++. ++.+.+++.+++.+... +.......+....+++.+.+..+. ...+.+++++++++++
T Consensus 37 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~-~~~~~~~~~~~~~la~~l~~~~p~-~~~~~~~f~~sGseA~ 114 (421)
T PRK09792 37 VEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTH-TAYQIVPYESYVTLAEKINALAPV-SGQAKTAFFTTGAEAV 114 (421)
T ss_pred CCCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHhccC-cccCccCCHHHHHHHHHHHHhCCC-CCCceEEEeCChHHHH
Confidence 36888999988863 3443 78899999999876321 111112345556666666554321 1225899999999999
Q ss_pred HHHHHHhcC-CC-CeEEEcCCCCCChHHHHHHc-CC-------------EEEEecCCCCCCCcC----CHHHHHhhhc--
Q 012095 169 LQAVLAVCS-PG-DEVIIPAPFWVSYPEMARIA-DA-------------TPVILPTRISENFLL----DPKVLESKLT-- 226 (471)
Q Consensus 169 ~~~~~~l~~-~g-d~Vlv~~p~y~~~~~~~~~~-G~-------------~~~~v~~~~~~~~~l----d~e~l~~~l~-- 226 (471)
..+++.... .| ..|+....+|++....+... |. .++.+|...+. ..+ +++.+++.+.
T Consensus 115 e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~-~~~~~~~~~~~l~~~~~~~ 193 (421)
T PRK09792 115 ENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDL-HGISTQDSLDAIERLFKSD 193 (421)
T ss_pred HHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccc-ccccHHHHHHHHHHHHHhc
Confidence 988886532 33 57888888888765433222 21 12223332111 012 3477777775
Q ss_pred ---cCCcEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCc
Q 012095 227 ---EKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK 302 (471)
Q Consensus 227 ---~~~~~i~i~~p~NPtG~~~-~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 302 (471)
++..+|++...++|+|..+ +++.+++|.++|++| ++++|+||+|.++.+.+.. ..+..+....| +.+|||
T Consensus 194 ~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEv~tg~gr~G~~-~a~~~~~~~pD----i~t~gK 267 (421)
T PRK09792 194 IEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEH-GIVMIADEVQSGFARTGKL-FAMDHYADKPD----LMTMAK 267 (421)
T ss_pred cCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCCCCch-hHHHhcCCCCc----EEEeeh
Confidence 2456666655589999765 999999999999999 9999999999998665532 22222321122 678999
Q ss_pred ccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCe
Q 012095 303 AFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 382 (471)
Q Consensus 303 ~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~ 382 (471)
.++ +|+|+||+++++++++.+.......+++.+++++.++.+.++.-. ..++++++++.-+..++.+.+..++.|.
T Consensus 268 ~l~-~G~pigav~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~-~~~~~~~~~~~g~~l~~~l~~l~~~~p~-- 343 (421)
T PRK09792 268 SLA-GGMPLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIID-KESLCERANQLGQRLKNTLIDAKESVPA-- 343 (421)
T ss_pred hhc-CCCceEEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHhCCC--
Confidence 998 999999999999999887654455677899999998877776421 1244444443322233333322233543
Q ss_pred eeCCCc-ceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHH
Q 012095 383 MSEPQG-AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIK 459 (471)
Q Consensus 383 ~~~p~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~ 459 (471)
+..+.| |+++|+.+++... ..........+++.++++ ||.+.+... ..+.||+.++. +++++++++++|.
T Consensus 344 v~~vrG~Gl~~~ie~~~~~~----~~~~~~~~~~l~~~~~~~-Gv~i~~~g~--~~~~irl~P~l~i~~~ei~~~~~~l~ 416 (421)
T PRK09792 344 IAAVRGLGSMIAAEFNDPQT----GEPSAAIAQKIQQRALAQ-GLLLLTCGA--YGNVIRFLYPLTIPDAQFDAAMKILQ 416 (421)
T ss_pred cceecccceEEEEEecCCcc----CCcchHHHHHHHHHHHHC-CcEEeecCC--CCCEEEEeCCCcCCHHHHHHHHHHHH
Confidence 234566 8889999864210 000001346677888876 998864221 14789999775 8999999999999
Q ss_pred HHHH
Q 012095 460 KGLL 463 (471)
Q Consensus 460 ~~l~ 463 (471)
++++
T Consensus 417 ~~l~ 420 (421)
T PRK09792 417 DALS 420 (421)
T ss_pred HHHh
Confidence 9875
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-23 Score=205.48 Aligned_cols=217 Identities=20% Similarity=0.187 Sum_probs=163.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCC
Q 012095 126 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADA 201 (471)
Q Consensus 126 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~G~ 201 (471)
.+| +++...+|+++++++. . ++.++++++++++..++.+++++||+|++++|.|..+...+ +..|+
T Consensus 46 ~ry-~~p~~~~Le~~lA~l~--------~-~~~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~ 115 (366)
T PRK07582 46 GRA-SNPTWRALEAALGELE--------G-AEALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGV 115 (366)
T ss_pred ECC-CCccHHHHHHHHHHHc--------C-CCEEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeE
Confidence 445 7778899999999985 2 34555566667999999999999999999999998887654 34799
Q ss_pred EEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCc
Q 012095 202 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 281 (471)
Q Consensus 202 ~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~ 281 (471)
+++.++.+.+ .+ .+.+++++|++++|+||||.+.+ +++|+++|+++ ++++|+|++|... + +.
T Consensus 116 ~v~~v~~~~~------~~----~~~~~t~lV~le~p~NPtg~v~d---i~~I~~~a~~~-g~~lvVD~t~~~~-~-~~-- 177 (366)
T PRK07582 116 TVREAPTAGM------AE----AALAGADLVLAETPSNPGLDVCD---LAALAAAAHAA-GALLVVDNTTATP-L-GQ-- 177 (366)
T ss_pred EEEEECCCCh------HH----HhccCceEEEEECCCCCCCCccC---HHHHHHHHHHc-CCEEEEECCCCCc-c-cc--
Confidence 9999986421 11 23357899999999999999888 99999999999 9999999999631 1 11
Q ss_pred cccccCCCCCCceEEEecCCccc-CccchhheeeEc-CHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHH
Q 012095 282 TSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 359 (471)
Q Consensus 282 ~~~~~~~~~~~~~i~~~S~SK~~-g~~G~R~G~v~~-~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~ 359 (471)
.++ .+ +..++++|+||.+ |.+|+|+||+++ ++++++++...+.....+++++....+...|.. +..
T Consensus 178 ~p~-~~----g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~t-------l~~ 245 (366)
T PRK07582 178 RPL-EL----GADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLGT-------LGL 245 (366)
T ss_pred Cch-hc----CCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccc-------HHH
Confidence 111 12 2238899999998 456799999997 578888888877777777788876655555543 344
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCe
Q 012095 360 MVKAFRERRDFLVKSFGELEGVK 382 (471)
Q Consensus 360 ~~~~~~~~r~~l~~~L~~~~g~~ 382 (471)
..++..++...+.+.|++.|.+.
T Consensus 246 R~~~~~~na~~la~~L~~~p~v~ 268 (366)
T PRK07582 246 RFARQCANALAVAELLAGHPAVR 268 (366)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcc
Confidence 44666678888888888877654
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=203.18 Aligned_cols=328 Identities=15% Similarity=0.127 Sum_probs=213.2
Q ss_pred CeEEcCCCC-CCCCChHHHHHHHHHHHHcC--------CCCCC--CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCCh
Q 012095 96 SVIRLAAGE-PDFDTPVLIAEAGINAIREG--------FTRYT--PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 164 (471)
Q Consensus 96 ~~i~l~~g~-~~~~~p~~v~~a~~~~~~~~--------~~~Y~--~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~ 164 (471)
++|+|++++ .++..++.+.+++.+++.+. .+..+ -..|..++.+.+.+.+++.+|. ++.+++++|+
T Consensus 5 ~~~~~~s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~---~~~l~~~sG~ 81 (370)
T PRK05937 5 LSIDFVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGA---PEAFIVPSGY 81 (370)
T ss_pred ceEEeECCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCC---CeEEEECChH
Confidence 589999998 78877777777777776542 11111 1234455555555555555563 3457777777
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc------CCcEEEEcCCC
Q 012095 165 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPS 238 (471)
Q Consensus 165 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~------~~~~i~i~~p~ 238 (471)
... ..++..+.++||.|++..-.|.+....++......+.++. .|+++|++.+++ ++++|++++++
T Consensus 82 ~a~-~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~v~~v~ 153 (370)
T PRK05937 82 MAN-LGLCAHLSSVTDYVLWDEQVHISVVYSLSVISGWHQSFRH-------NDLDHLESLLESCRQRSFGRIFIFVCSVY 153 (370)
T ss_pred HHH-HHHHHHhCCCCCEEEEEhhhhHHHHHHHHHcCCceEEecC-------CCHHHHHHHHHhhhccCCCcEEEEEecCC
Confidence 554 4455566678899888888888887777766544444432 489999998862 34566689999
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCH
Q 012095 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 318 (471)
Q Consensus 239 NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~ 318 (471)
|+||.+.| +++|.++|+++ ++++++||+|....++.........+. ..+..+++.||||.+|..| +.+++.+
T Consensus 154 s~~G~i~p---l~eI~~l~~~~-~~~livDea~~~G~~g~~g~g~~~~~~-~~~~~~~~~tlsK~~g~~G---~~vl~~~ 225 (370)
T PRK05937 154 SFKGTLAP---LEQIIALSKKY-HAHLIVDEAHAMGIFGDDGKGFCHSLG-YENFYAVLVTYSKALGSMG---AALLSSS 225 (370)
T ss_pred CCCCCccC---HHHHHHHHHHc-CCEEEEECCccccccCCCCCchHHhhC-CCCCcEEEEechhhhhcCc---eEEEcCH
Confidence 99999999 88999999999 999999999986544322111111111 1122367899999999767 4456667
Q ss_pred HHHHHHHHHHhc--ccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEec
Q 012095 319 HFVAACNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF 396 (471)
Q Consensus 319 ~~i~~l~~~~~~--~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~ 396 (471)
++.+.+.....+ +..+.+++...++.++++.- .+.-+..++++++.++++.+.|... +. +....+.+
T Consensus 226 ~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l---~~~~~~~~~~l~~l~~~l~~~l~~~-~~-------~~~~~i~~ 294 (370)
T PRK05937 226 EVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFL---SQEGELARKQLFRLKEYFAQKFSSA-AP-------GCVQPIFL 294 (370)
T ss_pred HHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHH---HhCcHHHHHHHHHHHHHHHHhcCCC-CC-------CCEEEEEe
Confidence 766655532222 23345666666565666531 1112345667788888888877643 11 01112334
Q ss_pred CCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhCC
Q 012095 397 STYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 467 (471)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~~~ 467 (471)
+.. ....+.+.|.++ ||.+.... +...+++|+|++. +++|++++++.|.+++++++.
T Consensus 295 ~~~------------~~~~~~~~L~~~-gi~v~~~~-~~~~~~iRis~~~~~t~edid~l~~~L~~~~~~~~~ 353 (370)
T PRK05937 295 PGI------------SEQELYSKLVET-GIRVGVVC-FPTGPFLRVNLHAFNTEDEVDILVSVLATYLEKYQK 353 (370)
T ss_pred CCh------------hHHHHHHHHHHC-CeeEEeeC-CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 421 456777776655 99887432 2234689999986 999999999999999987653
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=204.23 Aligned_cols=219 Identities=16% Similarity=0.211 Sum_probs=169.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChH----HHHHHcCCEEEE
Q 012095 130 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVI 205 (471)
Q Consensus 130 ~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~G~~~~~ 205 (471)
+.+-..+|++.+++++ | .+++++++++++++..++.+++++||+|+++.+.|.+.. ..++..|++++.
T Consensus 52 ~~p~~~~le~~la~l~----g----~~~~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~ 123 (380)
T TIGR01325 52 ANPTVAAFEERIAALE----G----AERAVATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRFGIEVSF 123 (380)
T ss_pred CCchHHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCCEEEE
Confidence 3445677888888775 3 257888999999999999999999999999999887643 356778999998
Q ss_pred ecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccc
Q 012095 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 285 (471)
Q Consensus 206 v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~ 285 (471)
++.+ |++++++++++++++|++++|+||+|.+.+ +++|.++|+++ ++++|+|++|....+.. ++
T Consensus 124 v~~~-------d~~~l~~~i~~~tklV~le~p~np~g~~~d---l~~I~~la~~~-gi~livD~a~~~~~~~~----pl- 187 (380)
T TIGR01325 124 VDPT-------DLNAWEAAVKPNTKLVFVETPSNPLGELVD---IAALAELAHAI-GALLVVDNVFATPVLQQ----PL- 187 (380)
T ss_pred ECCC-------CHHHHHHhcCCCceEEEEECCCCCCCeeeC---HHHHHHHHHHc-CCEEEEECCCcccccCC----ch-
Confidence 8752 789999999889999999999999999998 89999999999 99999999997543211 11
Q ss_pred cCCCCCCceEEEecCCcccCccchhh-eeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHH
Q 012095 286 SLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364 (471)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~g~~G~R~-G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~ 364 (471)
. .+..+++.|++|.++.+|.++ ||+++++++++.+.........+.+++...+ ++.. .+.+....++.
T Consensus 188 ~----~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~~g~~~~p~~a~~---~l~~----l~tl~~r~~~~ 256 (380)
T TIGR01325 188 K----LGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRHTGPAMSPFNAWV---LLKG----LETLSLRMQKQ 256 (380)
T ss_pred h----hCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHHhhCCCCCHHHHHH---HHhc----cCcHHHHHHHH
Confidence 1 234588999999998778776 7888999999988877655555555555333 3332 23355567777
Q ss_pred HHHHHHHHHHhcCCCCCee
Q 012095 365 RERRDFLVKSFGELEGVKM 383 (471)
Q Consensus 365 ~~~r~~l~~~L~~~~g~~~ 383 (471)
.+++..+.+.|++.|+++.
T Consensus 257 ~~~a~~la~~L~~~p~v~~ 275 (380)
T TIGR01325 257 FDSALAIAEWLQAQPQVQA 275 (380)
T ss_pred HHHHHHHHHHHHcCCCccE
Confidence 7888888999988876543
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-23 Score=206.96 Aligned_cols=314 Identities=17% Similarity=0.165 Sum_probs=217.5
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHcCCCCCCCC-------CCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHH
Q 012095 100 LAAGEPDFDTPVLIAEAGINAIREGFTRYTPN-------AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 172 (471)
Q Consensus 100 l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~-------~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~ 172 (471)
|..+.+. +.|+.+.+++.+.+.... .. |. ....++.+.+.+.+++.+|. ++++|++|+|+++++..++
T Consensus 3 ld~a~~~-~~~~~v~~a~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~r~~la~~~g~--~~~~v~~t~~~t~a~~~~l 77 (364)
T PLN02651 3 LDMQATT-PIDPRVLDAMLPFLIEHF-GN-PHSRTHLYGWESEDAVEKARAQVAALIGA--DPKEIIFTSGATESNNLAI 77 (364)
T ss_pred ccCcCCC-CCCHHHHHHHHHHHHhCC-CC-CChhhhHHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEeCCHHHHHHHHH
Confidence 3444443 357788898888764311 11 11 11133344445555555663 5789999999999988776
Q ss_pred HHh----cCCCCeEEEcCCCCCChHHH---HHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCC
Q 012095 173 LAV----CSPGDEVIIPAPFWVSYPEM---ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245 (471)
Q Consensus 173 ~~l----~~~gd~Vlv~~p~y~~~~~~---~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~ 245 (471)
..+ .++||+|++.+..|+++... +...|++++.++++. ++.+|+++++++++++++++++++++||||..+
T Consensus 78 ~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~ 155 (364)
T PLN02651 78 KGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKS--DGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQ 155 (364)
T ss_pred HHHHHhccCCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccCC--CCcCCHHHHHHhcCCCcEEEEEECCCCCceecc
Confidence 654 47899999999888765433 345799999998863 456899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHH
Q 012095 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 325 (471)
Q Consensus 246 ~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~ 325 (471)
+ +++|.++|+++ ++++++|.++... .....+.. .+..+++.|..|.+|.+ .+|+++.+++..+.+.
T Consensus 156 ~---l~~I~~~~~~~-g~~~~vD~a~~~g----~~~~~~~~----~~~D~~~~s~hK~~gp~--G~g~l~v~~~~~~~l~ 221 (364)
T PLN02651 156 P---VEEIGELCREK-KVLFHTDAAQAVG----KIPVDVDD----LGVDLMSISGHKIYGPK--GVGALYVRRRPRVRLE 221 (364)
T ss_pred c---HHHHHHHHHHc-CCEEEEEcchhhC----CcccCccc----CCCCEEEechhhhCCCC--ceEEEEEcCCCCCCCC
Confidence 9 88999999999 9999999999752 21122221 34458899999975533 4899988876554432
Q ss_pred HHH-------hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC-CCCCeeeCCCc-----ceEE
Q 012095 326 KIQ-------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQG-----AFYL 392 (471)
Q Consensus 326 ~~~-------~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~g~~~~~p~~-----g~~~ 392 (471)
... .....+++.....++.++|+. ..+..+...++.++.++++.+.|.+ ++|+++..|.. ...+
T Consensus 222 p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~---~~~~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~ 298 (364)
T PLN02651 222 PLMSGGGQERGRRSGTENTPLVVGLGAACEL---AMKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTL 298 (364)
T ss_pred ccccCCCccCCccCCCccHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEE
Confidence 111 112334666666777777765 2334577788889999999999986 67888876521 2234
Q ss_pred eEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------------------CCcEEEEeec--CHHHH
Q 012095 393 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------------------DTCIRISYAA--SLTTL 451 (471)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~-------------------~~~iRis~~~--~~e~i 451 (471)
.+.+++. +..++...|. + |.+..|+.+.. .+.+|+|++. |++||
T Consensus 299 ~~~~~~~------------~~~~~~~~L~-~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~di 363 (364)
T PLN02651 299 NLSFAYV------------EGESLLMGLK-E--VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEV 363 (364)
T ss_pred EEEeCCC------------CHHHHHHHhC-C--EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHc
Confidence 4456532 6778888773 3 99988875421 2689999997 77776
Q ss_pred H
Q 012095 452 Q 452 (471)
Q Consensus 452 ~ 452 (471)
+
T Consensus 364 d 364 (364)
T PLN02651 364 D 364 (364)
T ss_pred C
Confidence 4
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-22 Score=201.46 Aligned_cols=310 Identities=18% Similarity=0.266 Sum_probs=211.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCC
Q 012095 111 VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFW 189 (471)
Q Consensus 111 ~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~y 189 (471)
+.-.+++.+++..+. .| |..++++++++++++.+|. +++++++|+++++.+++.++ +++||+|+++.|+|
T Consensus 11 ~~~~~~~~~~l~~~~-~~----g~~~~~~~~e~~la~~~g~----~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~ 81 (375)
T PRK11706 11 GTELDYIQQAMSSGK-LC----GDGGFTRRCQQWLEQRFGS----AKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTF 81 (375)
T ss_pred HHHHHHHHHHHHcCC-cc----CCCHHHHHHHHHHHHHhCC----CeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCc
Confidence 344667777766543 23 3346778888888777663 68999999999998877765 68999999999999
Q ss_pred CChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEcc
Q 012095 190 VSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 269 (471)
Q Consensus 190 ~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De 269 (471)
..+...+...|++++.+++++ ++|.+|++++++++++++++|+++ |++|...+ +++|.++|++| +++||+|+
T Consensus 82 ~~~~~~~~~~G~~~v~~d~d~-~~~~~d~~~le~~i~~~tk~i~~~---~~~G~~~~---~~~i~~la~~~-~i~vIeD~ 153 (375)
T PRK11706 82 VSTANAFVLRGAKIVFVDIRP-DTMNIDETLIEAAITPKTRAIVPV---HYAGVACE---MDTIMALAKKH-NLFVVEDA 153 (375)
T ss_pred HHHHHHHHHcCCEEEEEecCC-CcCCcCHHHHHHhcCCCCeEEEEe---CCCCCccC---HHHHHHHHHHc-CCEEEEEC
Confidence 999999999999999999975 457899999999999899998865 46998887 88999999999 99999999
Q ss_pred CCCccc-cCCCCccccccCCCCCCceEEEecCC--cccCccchhheeeEcCHHHHHHHHHHHhcc---------------
Q 012095 270 IYEHII-YAPATHTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAGPKHFVAACNKIQSQF--------------- 331 (471)
Q Consensus 270 ~y~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~g~~G~R~G~v~~~~~~i~~l~~~~~~~--------------- 331 (471)
+|+.+. +++.. ...+. .+.+.||. |.++ +|.+.++++.++++.++++..+...
T Consensus 154 a~a~g~~~~~~~---~g~~~-----~~~~~Sf~~~K~l~-~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 224 (375)
T PRK11706 154 AQGVMSTYKGRA---LGTIG-----HIGCFSFHETKNYT-AGEGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYT 224 (375)
T ss_pred ccccccccCCee---eecCc-----CEEEEeCCCCcccc-ccCCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcce
Confidence 998765 33321 11111 13344544 9997 6888888888999998887665321
Q ss_pred --cCCCChHHHHHHHHH-HhccCCChHHHHHHHHHHHHHHHHHHHHhcCCC--C-Ceee-CCCc----ceEEeEecCCcc
Q 012095 332 --TSGASSISQKAGVAA-LGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE--G-VKMS-EPQG----AFYLFIDFSTYY 400 (471)
Q Consensus 332 --~~~~~~~~q~aa~~~-L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~--g-~~~~-~p~~----g~~~~~~~~~~~ 400 (471)
..+.+...+....+. +.. .+.+++..++.+++.+.+.+.|.+++ | +.+. .+.+ .+++|+.+++.
T Consensus 225 ~~~~g~~~~~~~~~aa~~~~q----l~~l~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 299 (375)
T PRK11706 225 WVDIGSSYLPSELQAAYLWAQ----LEAADRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLRDL- 299 (375)
T ss_pred eeecccccCcCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEECCc-
Confidence 112222222221221 111 23355666666667777777787765 2 3322 1221 23456666542
Q ss_pred CCcccCCCCCCCHHHHHHHHHHcCCEEEECCC----C------CC---C---------CCcEEEEeec--CHHHHHHHHH
Q 012095 401 GSEAEGFGKIENSESLCRYLLDKAQVALVPGD----A------FG---D---------DTCIRISYAA--SLTTLQAAVE 456 (471)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~----~------f~---~---------~~~iRis~~~--~~e~i~~~~~ 456 (471)
.+..++.+.|.++ ||.+.... . ++ . ...+-+-+.. ++++++..++
T Consensus 300 ----------~~r~~l~~~L~~~-gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~ 368 (375)
T PRK11706 300 ----------EDRSALINFLKEA-GIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVID 368 (375)
T ss_pred ----------CCHHHHHHHHHHC-CCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHHH
Confidence 1567888888765 89865321 0 00 0 1234444443 7889999999
Q ss_pred HHHHHH
Q 012095 457 RIKKGL 462 (471)
Q Consensus 457 ~l~~~l 462 (471)
.|++++
T Consensus 369 ~i~~~~ 374 (375)
T PRK11706 369 TILEFF 374 (375)
T ss_pred HHHHHh
Confidence 888764
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=208.93 Aligned_cols=335 Identities=15% Similarity=0.129 Sum_probs=217.9
Q ss_pred cCCCeEEcCCCCCCCCC---hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGEPDFDT---PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~~~~~~---p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.+||+..|...... +|.+.+++.+++.+.... ...-..+....+++.+.+..| .+.++++++++++..
T Consensus 73 dG~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~~~~~--~~~~~~~~~~~la~~L~~~~~----~~~~~f~~SGseA~e 146 (474)
T PLN02624 73 EGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTLS--SRAFYNDKFPEFAEYLTSMFG----YDMVLPMNTGAEGVE 146 (474)
T ss_pred CCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhcCCc--ccccCCHHHHHHHHHHHhhcC----CCeEEEeCChHHHHH
Confidence 57889999888754433 789999999998763211 111223444445555554444 358999999999999
Q ss_pred HHHHHhcC--------C-CC-eEEEcCCCCCChHHHHHHcCCE-------------EEEecCCCCCCCcCCHHHHHhhhc
Q 012095 170 QAVLAVCS--------P-GD-EVIIPAPFWVSYPEMARIADAT-------------PVILPTRISENFLLDPKVLESKLT 226 (471)
Q Consensus 170 ~~~~~l~~--------~-gd-~Vlv~~p~y~~~~~~~~~~G~~-------------~~~v~~~~~~~~~ld~e~l~~~l~ 226 (471)
.+++.... + ++ .|+....+|++....+...... +..++. .|++.+++.++
T Consensus 147 ~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~ 219 (474)
T PLN02624 147 TAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDF-------GDLDALEKIFE 219 (474)
T ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCC-------CCHHHHHHHHH
Confidence 88875432 1 33 5777778887764433322211 112221 17889998885
Q ss_pred ---cCCcEEEEcCCCCCcccCCCHH-HHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCc
Q 012095 227 ---EKSRLLILCSPSNPTGSVYPKN-LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK 302 (471)
Q Consensus 227 ---~~~~~i~i~~p~NPtG~~~~~~-~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 302 (471)
+++++|++..++|++|.+++++ .+++|.++|++| |+++|+||+|.++...|... .. ...+.. ..+.+|||
T Consensus 220 ~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~-gillI~DEv~tG~GrtG~~~-a~-~~~~i~---pDiv~lsK 293 (474)
T PLN02624 220 EDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKH-NVLMIADEIQTGLARTGKML-AC-DWEEVR---PDVVILGK 293 (474)
T ss_pred hCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCcCcCcchh-hH-HhcCCC---CCEEEecc
Confidence 3567888888999999988766 599999999999 99999999998764444211 11 111111 12444789
Q ss_pred ccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC----C
Q 012095 303 AFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE----L 378 (471)
Q Consensus 303 ~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~----~ 378 (471)
.+|.+++++|++++++++++.+.......+++.+++.+.++.++|+.. ++ ..+.+...++.+.+.+.|.+ +
T Consensus 294 ~lggG~~pigav~~~~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l---~~--~~l~~~~~~~~~~l~~~L~~l~~~~ 368 (474)
T PLN02624 294 ALGGGVIPVSAVLADKDVMLCIKPGEHGSTFGGNPLASAVAMAALQVV---QD--EKLAERSAKLGQELRDQLQKIQKQF 368 (474)
T ss_pred cccCCCCcceeeeecHHHHhHhccCCcCCCCCCCHHHHHHHHHHHHHH---Hh--chHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999666999999999998887765544556678999999999998741 11 11222233333333333332 2
Q ss_pred CC-CeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHH
Q 012095 379 EG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAV 455 (471)
Q Consensus 379 ~g-~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~i~~~~ 455 (471)
+. +....+.|.|+. +.+..... ......++++.|+++ ||++.|+. ++++||++. .++++|++++
T Consensus 369 ~~~i~~vrg~G~~~~-i~l~~~~~-------~~~~a~~~~~~L~e~-GV~v~p~~----~~~lR~~p~l~~t~e~id~~l 435 (474)
T PLN02624 369 PKLIKEVRGRGLLNA-VVLNSPKL-------GPVSAYDVCLKLKER-GLLAKPTH----DTIIRLAPPLSISEDELQECS 435 (474)
T ss_pred CCceEEEEeeEEEEE-EEecCCCc-------ChHHHHHHHHHHHhC-CeEEecCC----CCEEEEECCccCCHHHHHHHH
Confidence 22 333445666543 34432100 001356788887664 99999863 578999864 4999999999
Q ss_pred HHHHHHHHh
Q 012095 456 ERIKKGLLT 464 (471)
Q Consensus 456 ~~l~~~l~~ 464 (471)
++|++++++
T Consensus 436 ~~L~~~l~~ 444 (474)
T PLN02624 436 KALSDVLEH 444 (474)
T ss_pred HHHHHHHHH
Confidence 999999875
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-22 Score=201.31 Aligned_cols=311 Identities=17% Similarity=0.211 Sum_probs=211.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCC
Q 012095 111 VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFW 189 (471)
Q Consensus 111 ~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~y 189 (471)
+.-.+++.+++..+...++ +...+|++.++++++ .++++.++|+++++.+++.++ +++||+|++++|+|
T Consensus 14 ~~e~~~~~~~l~~~~~~~g--~~~~~le~~la~~~g--------~~~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~ 83 (379)
T PRK11658 14 DEELAAVKEVLRSGWITTG--PKNQALEQAFCQLTG--------NQHAIAVSSATAGMHITLMALGIGPGDEVITPSLTW 83 (379)
T ss_pred HHHHHHHHHHHHcCCccCC--HhHHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcH
Confidence 4557778888877655443 357899999999873 246888999999999999998 89999999999999
Q ss_pred CChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEcc
Q 012095 190 VSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 269 (471)
Q Consensus 190 ~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De 269 (471)
..+...+...|++++.++++. +++.+|++.+++++++++|+|+ |+||+|...+ +++|.++|++| |++||+|+
T Consensus 84 ~~~~~~~~~~G~~~v~vd~~~-~~~~~d~~~l~~~i~~~tkav~---~~~~~G~~~d---~~~i~~~a~~~-gi~vi~D~ 155 (379)
T PRK11658 84 VSTLNMIVLLGATPVMVDVDR-DTLMVTPEAIEAAITPRTKAII---PVHYAGAPAD---LDAIRAIGERY-GIPVIEDA 155 (379)
T ss_pred HHHHHHHHHcCCEEEEEecCC-CcCCcCHHHHHHhcccCCeEEE---EeCCCCCcCC---HHHHHHHHHHc-CCeEEEEC
Confidence 999999999999999999875 4577999999999998999887 6678999988 88999999999 99999999
Q ss_pred CCCcc-ccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcC-HHHHHHHHHHHhccc---------------
Q 012095 270 IYEHI-IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFT--------------- 332 (471)
Q Consensus 270 ~y~~~-~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~-~~~i~~l~~~~~~~~--------------- 332 (471)
+|... .+.+.. +. ..+ +.+.||++...+++.+.|+++.+ +++.++++..+....
T Consensus 156 a~a~g~~~~~~~------~g-~~g--~~~~Sf~~~K~l~~g~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 226 (379)
T PRK11658 156 AHAVGTYYKGRH------IG-ARG--TAIFSFHAIKNITCAEGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQ 226 (379)
T ss_pred CCccCCeECCee------cC-CCC--CEEEeCCCCCcCcccCceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCc
Confidence 99853 233211 11 112 24677776666677889998874 788887776442110
Q ss_pred -------CCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC----cceEE-eEecCCcc
Q 012095 333 -------SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAFYL-FIDFSTYY 400 (471)
Q Consensus 333 -------~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~----~g~~~-~~~~~~~~ 400 (471)
++.......|+..... .+.+++..++.++..+.+.+.|.++++..+..|. .++++ .+.++...
T Consensus 227 ~~~~~~G~n~~~~~l~AAl~~~q-----l~~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (379)
T PRK11658 227 AEVLTPGYKYNLADINAAIALVQ-----LAKLEALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRVDEER 301 (379)
T ss_pred ceeeccccccCcCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEECCcc
Confidence 0000111122222222 2446667777777778888888887543332222 12222 34443210
Q ss_pred CCcccCCCCCCCHHHHHHHHHHcCCEEEECCC----C---CC-------C-------CCcEEEEeec--CHHHHHHHHHH
Q 012095 401 GSEAEGFGKIENSESLCRYLLDKAQVALVPGD----A---FG-------D-------DTCIRISYAA--SLTTLQAAVER 457 (471)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~----~---f~-------~-------~~~iRis~~~--~~e~i~~~~~~ 457 (471)
.+ .+..++.++|.++ ||.+.+.. . |. . ...+-+-+.. ++++++..++.
T Consensus 302 ----~~----~~r~~~~~~L~~~-gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~ 372 (379)
T PRK11658 302 ----CG----ISRDALMEALKER-GIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITA 372 (379)
T ss_pred ----cc----CCHHHHHHHHHHC-CCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHH
Confidence 00 1567888888665 88654321 0 00 0 1234444443 88999999999
Q ss_pred HHHHH
Q 012095 458 IKKGL 462 (471)
Q Consensus 458 l~~~l 462 (471)
|++++
T Consensus 373 i~~~~ 377 (379)
T PRK11658 373 LQQIA 377 (379)
T ss_pred HHHHH
Confidence 98875
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=206.45 Aligned_cols=332 Identities=15% Similarity=0.152 Sum_probs=224.4
Q ss_pred cCCCeEEcCCCCCCCCC---hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGEPDFDT---PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~~~~~~---p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+++||+..|...... ++.+.+++.+++.+..... + ....+....+++.+.+.+| .+.+++++++++++.
T Consensus 35 ~g~~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~-~-~~~~~~~~~l~~~l~~~~~----~~~~~~~~SGs~A~e 108 (401)
T TIGR01885 35 EGKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTLSS-R-AFYNDVFGEFAEYVTKLFG----YDKVLPMNTGAEAVE 108 (401)
T ss_pred CCCEEEEcccCHhhccCCCCCHHHHHHHHHHHHhccccc-c-ccCCHHHHHHHHHHHhhcC----CCEEEEeCccHHHHH
Confidence 67889999988655443 7899999998886522111 1 1123455556666655554 258999999999999
Q ss_pred HHHHHhc---------CCC-CeEEEcCCCCCCh-HHHHHHcCC------------EEEEecCCCCCCCcCCHHHHHhhhc
Q 012095 170 QAVLAVC---------SPG-DEVIIPAPFWVSY-PEMARIADA------------TPVILPTRISENFLLDPKVLESKLT 226 (471)
Q Consensus 170 ~~~~~l~---------~~g-d~Vlv~~p~y~~~-~~~~~~~G~------------~~~~v~~~~~~~~~ld~e~l~~~l~ 226 (471)
.+++.+. .+| +.|+..+.+|.+. ...+...|- .++.++. .|++++++++.
T Consensus 109 ~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~ 181 (401)
T TIGR01885 109 TAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPY-------NNLEALEEALE 181 (401)
T ss_pred HHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCC-------CCHHHHHHHHH
Confidence 9888752 133 5677788888753 444443321 1222322 27889998885
Q ss_pred ---cCCcEEEEcCCCCCcccCCC-HHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCc
Q 012095 227 ---EKSRLLILCSPSNPTGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK 302 (471)
Q Consensus 227 ---~~~~~i~i~~p~NPtG~~~~-~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 302 (471)
++..+|++..+++++|...+ .+.+++|.++|++| ++++|+||+|..+.+.|.. ... ...+.... ++ +|||
T Consensus 182 ~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~-~~lli~DEv~~g~g~~G~~-~~~-~~~~~~~d-i~--~~gK 255 (401)
T TIGR01885 182 DHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKH-NVLLIADEIQTGLGRTGKL-LCV-DHENVKPD-IV--LLGK 255 (401)
T ss_pred hcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCccchh-hHH-hhcCCCCC-EE--Eeec
Confidence 34557777778999999886 44799999999999 9999999999876444421 111 12111122 22 4789
Q ss_pred ccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCC-CC
Q 012095 303 AFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE-GV 381 (471)
Q Consensus 303 ~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-g~ 381 (471)
.++.+|+|+||+++++++++.+.......+++.+++.+.++.++|+.. ++ ..+.++.++..+++.+.|+++. ++
T Consensus 256 ~l~~g~~~ig~v~~~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i---~~--~~l~~~~~~~~~~~~~~L~~l~~~~ 330 (401)
T TIGR01885 256 ALSGGVYPVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVL---EE--EKLAENAEKLGEIFRDQLKKLPKPI 330 (401)
T ss_pred cccCCCCCcEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHhccCCc
Confidence 998666999999999999988765333446677899999999998752 21 1344566667788888888862 22
Q ss_pred -eeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHH
Q 012095 382 -KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERI 458 (471)
Q Consensus 382 -~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~i~~~~~~l 458 (471)
....+.|.|+. +.++.... + .+..+++++|.++ ||.+.|+. ++.+||+.. .++++|++++++|
T Consensus 331 ~~~~~g~g~~~~-i~~~~~~~----~----~~~~~l~~~l~~~-Gv~v~~~~----~~~lRi~p~l~~t~~~i~~~l~~l 396 (401)
T TIGR01885 331 ITEVRGRGLLNA-IVIDESKT----G----RTAWDLCLKLKEK-GLLAKPTH----GNIIRLAPPLVITEEQLDEGLEII 396 (401)
T ss_pred eeEEeecCeeEE-EEeccCcc----h----hHHHHHHHHHHhC-CEEEEecC----CCEEEEeCCccCCHHHHHHHHHHH
Confidence 22345666654 33432100 0 1457888888765 99998853 578999986 4999999999999
Q ss_pred HHHH
Q 012095 459 KKGL 462 (471)
Q Consensus 459 ~~~l 462 (471)
++++
T Consensus 397 ~~~l 400 (401)
T TIGR01885 397 KKVI 400 (401)
T ss_pred HHHh
Confidence 9876
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.8e-23 Score=204.39 Aligned_cols=287 Identities=13% Similarity=0.151 Sum_probs=197.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCE-EE
Q 012095 126 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT-PV 204 (471)
Q Consensus 126 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~-~~ 204 (471)
.+| +++...+|+++++++. ..+++++++|+++++.+++ .++++||+|+++.+.|......+.....+ -+
T Consensus 49 ~R~-~~p~~~~le~~lA~le--------g~~~~v~~~sG~aAi~~~l-~~l~~GD~VI~~~~~yg~~~~~~~~~~~~~~~ 118 (364)
T PRK07269 49 TRT-KNPTRAKLEETLAAIE--------SADYALATSSGMSAIVLAF-SVFPVGSKVVAVRDLYGGSFRWFNQQEKEGRF 118 (364)
T ss_pred eCC-CCccHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHH-HHhCCCCEEEEecCCcCchHHHHHHHHhcCcE
Confidence 344 5567789999999986 4579999999999999888 46799999999999997766544332111 01
Q ss_pred EecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCcccc
Q 012095 205 ILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF 284 (471)
Q Consensus 205 ~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~ 284 (471)
.+ .|..|++++++++++++|+|++++|+||||.+.+ +++|+++|+++ ++++|+|++|..-.+. .++
T Consensus 119 ~~------~~~~d~~~l~~~i~~~TklV~lesP~NPtg~~~d---i~~I~~la~~~-gi~vvvD~t~~~~~~~----~pl 184 (364)
T PRK07269 119 HF------TYANTEEELIAAIEEDTDIVYIETPTNPLMVEFD---IEKVAKLAHAK-GAKVIVDNTFYSPIYQ----RPI 184 (364)
T ss_pred EE------EecCCHHHHHHhcCcCceEEEEECCCCCCCeeeC---HHHHHHHHHHc-CCEEEEECCCcccccC----Cch
Confidence 11 1336899999999999999999999999999998 99999999999 9999999997542211 111
Q ss_pred ccCCCCCCceEEEecCCcccCccc-hhheeeEc-CHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHH
Q 012095 285 ASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 362 (471)
Q Consensus 285 ~~~~~~~~~~i~~~S~SK~~g~~G-~R~G~v~~-~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~ 362 (471)
. .+-.+++.|++|.++-.| .=.||+++ ++++.++++..+...+.+.+++..+.+...|+ .+...++
T Consensus 185 -~----~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~-------tL~~r~~ 252 (364)
T PRK07269 185 -E----LGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLK-------TLSLRME 252 (364)
T ss_pred -h----hCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCC-------cHHHHHH
Confidence 1 233499999999996222 12488887 57788888766655556677776655554444 2666777
Q ss_pred HHHHHHHHHHHHhcCCCCC-ee-eCCCcceEEeEecCCccCCcccCCCCCCCHHHHHH---------HHHHcCCEEEECC
Q 012095 363 AFRERRDFLVKSFGELEGV-KM-SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCR---------YLLDKAQVALVPG 431 (471)
Q Consensus 363 ~~~~~r~~l~~~L~~~~g~-~~-~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------~Ll~~~gV~v~pg 431 (471)
+..++...+.+.|++.|++ .+ +++.||++.+. +... .....|.+ .|.....+.+.|+
T Consensus 253 ~~~~na~~~a~~L~~~p~v~~v~ypg~gg~~sf~-~~~~-----------~~~~~f~~~l~~~~~~~slG~~~sl~~~p~ 320 (364)
T PRK07269 253 RSTANAQEVVAFLKKSPAVKEVLYTGKGGMISFK-VADE-----------TRIPHILNSLKVFTFAESLGGVESLITYPT 320 (364)
T ss_pred HHHHHHHHHHHHHHhCCCccEEeCCCcCcEEEEE-ECCH-----------HHHHHHHHhCCcceEccCCCCcCeEeeCCc
Confidence 7788888889999888875 33 36778885554 3211 01222322 2222334566665
Q ss_pred CCCC-------------CCCcEEEEeecCHHHHHHHHHHHHHHH
Q 012095 432 DAFG-------------DDTCIRISYAASLTTLQAAVERIKKGL 462 (471)
Q Consensus 432 ~~f~-------------~~~~iRis~~~~~e~i~~~~~~l~~~l 462 (471)
+.+. .++.||+|++.. +.+..++.|.+++
T Consensus 321 ~~~~~~~~~~~r~~~Gi~~~liRlsvGlE--~~~dli~dl~~al 362 (364)
T PRK07269 321 TQTHADIPAEVRHSYGLTDDLLRLSIGIE--DARDLIADLKQAL 362 (364)
T ss_pred ccccccCCHHHHHhcCCCCCeEEEEeccC--CHHHHHHHHHHHh
Confidence 4331 136899999983 3445555555555
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-22 Score=200.00 Aligned_cols=240 Identities=14% Similarity=0.137 Sum_probs=179.7
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCC--CCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEE
Q 012095 106 DFDTPVLIAEAGINAIREGFTRYTP--NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVI 183 (471)
Q Consensus 106 ~~~~p~~v~~a~~~~~~~~~~~Y~~--~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vl 183 (471)
.++.++++.++..... .+...|+. .++..+|++.|+++. ..+++++++|+++++..++.+++++||+|+
T Consensus 34 ~~~~~~~~~~~~~~~~-~~~~~Y~r~~npt~~~Le~~iA~le--------~~~~~~~~~sG~~Ai~~~l~all~~GD~Vv 104 (394)
T PRK09028 34 VFDTVAEMRHAAKNRA-NGEMFYGRRGTPTHFAFQAAIVELE--------GGAGTALYPSGAAAISNALLSFLKAGDHLL 104 (394)
T ss_pred ccCCHHHHHHHhccCc-cCCceecCCCCchHHHHHHHHHHHh--------CCCcEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 3455555555443221 12245665 345578999999884 235789999999999999999999999999
Q ss_pred EcCCCCCChHHH----HHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHh
Q 012095 184 IPAPFWVSYPEM----ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK 259 (471)
Q Consensus 184 v~~p~y~~~~~~----~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~ 259 (471)
+++|.|.++... ....|+++..++.. +.+.+++++++++|+|++++|+||||.+.+ +++|+++|++
T Consensus 105 v~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~-------~~e~l~~~l~~~TklV~lespsNPtg~v~d---l~~I~~la~~ 174 (394)
T PRK09028 105 MVDSCYEPTRDLCDKILKGFGIETTYYDPM-------IGEGIRELIRPNTKVLFLESPGSITMEVQD---VPTLSRIAHE 174 (394)
T ss_pred EECCCcHHHHHHHHHhhhhcceEEEEECCC-------CHHHHHHhcCcCceEEEEECCCCCCCcHHH---HHHHHHHHHH
Confidence 999999887753 34578888776532 567899999999999999999999998876 9999999999
Q ss_pred CCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCccc-CccchhheeeEcCHHHHHHHHHHHhcccCCCChH
Q 012095 260 HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSI 338 (471)
Q Consensus 260 ~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~ 338 (471)
+ ++++|+|++|..... ..+...+-.+++.|.+|.+ |-.+...|+++.++++.+.+.........+++++
T Consensus 175 ~-g~~lvvD~t~a~p~~---------~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~~~~G~~~~p~ 244 (394)
T PRK09028 175 H-DIVVMLDNTWASPIN---------SRPFEMGVDISIQAATKYIVGHSDVMLGTATANEKHWDQLREHSYLMGQCTSPD 244 (394)
T ss_pred c-CCEEEEECCcccccc---------CCccccCceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHHHhcCCCCCHH
Confidence 9 999999999974210 1111235569999999999 5445677988888888888876666667777877
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 012095 339 SQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 381 (471)
Q Consensus 339 ~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~ 381 (471)
....+..-|+ .+.-+.++..++...+.+.|++.|.+
T Consensus 245 ~a~l~~rgl~-------TL~lR~~~~~~na~~la~~L~~~p~v 280 (394)
T PRK09028 245 DVYLAMRGLR-------TLGVRLAQHEKNALKVANWLATRPEV 280 (394)
T ss_pred HHHHHHcccC-------cHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 6554444333 36666777788888899999987765
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-22 Score=201.63 Aligned_cols=217 Identities=13% Similarity=0.138 Sum_probs=164.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH---HHcCCEEEEe
Q 012095 130 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA---RIADATPVIL 206 (471)
Q Consensus 130 ~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~---~~~G~~~~~v 206 (471)
.++...+|++.+++++ | .+++++++|+++++..++.+++++||+|+++.|+|.++...+ ...|++++.+
T Consensus 51 ~np~~~~lE~~lA~l~----g----~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~ 122 (385)
T PRK08574 51 ENPTLRPLEEALAKLE----G----GVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLA 122 (385)
T ss_pred CCccHHHHHHHHHHHh----C----CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCcEEEEE
Confidence 4456788999999886 2 357888899999999999999999999999999999987766 4457777665
Q ss_pred cCCCCCCCcCCHHHHHhhhcc-CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccc
Q 012095 207 PTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 285 (471)
Q Consensus 207 ~~~~~~~~~ld~e~l~~~l~~-~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~ 285 (471)
. +|++++++++++ ++++|++++|+||||.+++ +++|+++|+++ +++||+|++|..... ..++
T Consensus 123 ~--------~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~d---l~~I~~la~~~-gi~livD~t~a~~~~----~~~l- 185 (385)
T PRK08574 123 Y--------PSTEDIIEAIKEGRTKLVFIETMTNPTLKVID---VPEVAKAAKEL-GAILVVDNTFATPLL----YRPL- 185 (385)
T ss_pred C--------CCHHHHHHhcCccCceEEEEECCCCCCCEecC---HHHHHHHHHHc-CCEEEEECCCCcccc----CChh-
Confidence 3 478999999987 8999999999999999999 88999999999 999999999964211 0111
Q ss_pred cCCCCCCceEEEecCCcccCccchh-heeeE-cCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHH
Q 012095 286 SLPGMWERTLTVNGFSKAFAMTGWR-LGYIA-GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (471)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~g~~G~R-~G~v~-~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~ 363 (471)
. .+..+++.|++|.++-+|-. .|+++ .++++++++...+...+.+.+++....+...|+ .+....++
T Consensus 186 ~----~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~-------tL~~R~~~ 254 (385)
T PRK08574 186 R----HGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLK-------TLEVRFER 254 (385)
T ss_pred h----hCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcccC-------cHHHHHHH
Confidence 1 24469999999999755555 37555 578888888877766666667665444443333 24455555
Q ss_pred HHHHHHHHHHHhcCCCCCe
Q 012095 364 FRERRDFLVKSFGELEGVK 382 (471)
Q Consensus 364 ~~~~r~~l~~~L~~~~g~~ 382 (471)
..++...+.+.|++.|.+.
T Consensus 255 ~~~na~~la~~L~~~p~v~ 273 (385)
T PRK08574 255 QCRNAMAIAEFLSEHPKVA 273 (385)
T ss_pred HHHHHHHHHHHHHcCCCcC
Confidence 6667777888888776553
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-22 Score=197.91 Aligned_cols=301 Identities=17% Similarity=0.229 Sum_probs=209.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCCCChH
Q 012095 115 EAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYP 193 (471)
Q Consensus 115 ~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~ 193 (471)
+++.+.+..+.. +......++++.+++++ | .+++++++|+++++..++.++ +.+||+|+++.++|.++.
T Consensus 3 ~~~~~~~~~~~~--~~~~~~~~~~~~la~~~----~----~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~ 72 (352)
T cd00616 3 EAVEEVLDSGWL--TLGPKVREFEKAFAEYL----G----VKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATA 72 (352)
T ss_pred HHHHHHHHcCCc--cCCHHHHHHHHHHHHHh----C----CCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHH
Confidence 455666655443 33446788888888886 3 357888889999999999988 589999999999999999
Q ss_pred HHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCc
Q 012095 194 EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 273 (471)
Q Consensus 194 ~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~ 273 (471)
..+...|++++.++++. +++.+|++.+++.+++++++|+++ ||+|...+ +++|.++|+++ ++++|+|++|..
T Consensus 73 ~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~~~---~~~i~~l~~~~-~i~li~D~a~~~ 144 (352)
T cd00616 73 NAILLLGATPVFVDIDP-DTYNIDPELIEAAITPRTKAIIPV---HLYGNPAD---MDAIMAIAKRH-GLPVIEDAAQAL 144 (352)
T ss_pred HHHHHcCCeEEEEecCC-CcCCcCHHHHHHhcCcCCeEEEEE---CCCCCcCC---HHHHHHHHHHc-CCeEEEECCCCC
Confidence 99999999999999864 357799999999998889988875 47999888 88889999999 999999999975
Q ss_pred cccCCCCccccccCCCCCCceEEEecCC--cccCccchhheeeEcC-HHHHHHHHHHHhcc---------------cCCC
Q 012095 274 IIYAPATHTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAGP-KHFVAACNKIQSQF---------------TSGA 335 (471)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~g~~G~R~G~v~~~-~~~i~~l~~~~~~~---------------~~~~ 335 (471)
...... . .+.. ...+.+.||+ |.++ +.+.|+++++ +++++.+....... +..+
T Consensus 145 g~~~~~--~---~~~~--~~d~~~~S~~~~K~~~--~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (352)
T cd00616 145 GATYKG--R---KVGT--FGDAGAFSFHPTKNLT--TGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRL 215 (352)
T ss_pred CCeECC--E---Eccc--CcceeEEcCCCCCCCc--ccCceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCc
Confidence 322110 0 1111 1236677776 8874 4456888875 57887776543321 1122
Q ss_pred ChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCc-----ceEEeEecCCccCCcccCCCCC
Q 012095 336 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG-----AFYLFIDFSTYYGSEAEGFGKI 410 (471)
Q Consensus 336 ~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~-----g~~~~~~~~~~~~~~~~~~~~~ 410 (471)
+.+...++... ...+++..++.+++.+++.+.|.+++|+++..+.. ...+.+.+++.. .
T Consensus 216 ~~~~aa~~~~~-------l~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 279 (352)
T cd00616 216 SEIQAAIGLAQ-------LEKLDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEA---------G 279 (352)
T ss_pred CHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcC---------C
Confidence 33332222222 23456677777888999999999988888764322 233445554310 0
Q ss_pred CCHHHHHHHHHHcCCEEEECCCCCC----------------C-------CCcEEEEeec--CHHHHHHHHHHHH
Q 012095 411 ENSESLCRYLLDKAQVALVPGDAFG----------------D-------DTCIRISYAA--SLTTLQAAVERIK 459 (471)
Q Consensus 411 ~~~~~l~~~Ll~~~gV~v~pg~~f~----------------~-------~~~iRis~~~--~~e~i~~~~~~l~ 459 (471)
.+..++.+.|.++ ||.+....... . .+.+|+++.. ++++++.+++.|+
T Consensus 280 ~~~~~v~~~L~~~-gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 280 ESRDELIEALKEA-GIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred CCHHHHHHHHHHC-CCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 2678899988665 88664322110 0 1579999986 9999999988763
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=203.78 Aligned_cols=217 Identities=14% Similarity=0.137 Sum_probs=162.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH----HHHHcCCEEEE
Q 012095 130 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVI 205 (471)
Q Consensus 130 ~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~G~~~~~ 205 (471)
+++...+|++.++++. | .+++++++|+++++..++.++++|||+|++++|+|..+.. .+...|++++.
T Consensus 63 ~~pt~~~Le~~lA~l~----g----~~~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~ 134 (394)
T PRK07050 63 ATPTSLALAQRLAEIE----G----GRHALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRF 134 (394)
T ss_pred CCHHHHHHHHHHHHHh----C----CCeEEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCeEEEE
Confidence 4445566777776664 3 4689999999999999999999999999999999998774 45678999988
Q ss_pred ecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccc
Q 012095 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 285 (471)
Q Consensus 206 v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~ 285 (471)
++.. +.+.+++++++++|+|++++|+||+|...+ +++|+++|+++ +++||+|++|....+ +.
T Consensus 135 vd~~-------~~~~l~~~i~~~tklV~le~p~Np~~~~~d---i~~I~~ia~~~-gi~livD~a~a~~~~-------~~ 196 (394)
T PRK07050 135 YDPL-------IGAGIADLIQPNTRLIWLEAPGSVTMEVPD---VPAITAAARAR-GVVTAIDNTYSAGLA-------FK 196 (394)
T ss_pred ECCC-------CHHHHHHhcCCCCeEEEEECCCCCCccHhh---HHHHHHHHHHc-CCEEEEECCcccccc-------cC
Confidence 8642 457889999999999999999999986555 99999999999 999999999975321 11
Q ss_pred cCCCCCCceEEEecCCcccC-ccchhheeeEc-CHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHH
Q 012095 286 SLPGMWERTLTVNGFSKAFA-MTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (471)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~g-~~G~R~G~v~~-~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~ 363 (471)
.+. .+..+++.|++|.++ -.+.+.|++++ +++++++++..+...+.+.+++....+...|+ .+....++
T Consensus 197 ~l~--~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~lr~l~-------tl~~Rl~~ 267 (394)
T PRK07050 197 PFE--HGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLP-------SLQVRLAA 267 (394)
T ss_pred HHH--cCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCC-------cHHHHHHH
Confidence 111 234599999999995 23345798775 78888988887776666677766443333222 23334555
Q ss_pred HHHHHHHHHHHhcCCCCC
Q 012095 364 FRERRDFLVKSFGELEGV 381 (471)
Q Consensus 364 ~~~~r~~l~~~L~~~~g~ 381 (471)
..++...+.+.|++.|++
T Consensus 268 ~~~~a~~la~~L~~~p~v 285 (394)
T PRK07050 268 HDRSALEVAEWLKARPEI 285 (394)
T ss_pred HHHHHHHHHHHHHhCCCc
Confidence 556666777777776654
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.2e-22 Score=199.54 Aligned_cols=341 Identities=14% Similarity=0.127 Sum_probs=229.6
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+.+||+..|. ..++. ++.+.+++.+++.+.. .+++. -..+....+++.+.+..+ ..+.++++++++++.
T Consensus 37 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~-~~~~~-~~~~~~~~la~~L~~~~~---~~~~v~f~~sGseA~ 111 (408)
T PRK04612 37 DQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLW-HTSNV-FYSAPPLKLAEELVTASR---FAEKVFLCNSGTEAN 111 (408)
T ss_pred CCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcc-ccccc-cCCHHHHHHHHHHHhhCC---CCCEEEEcCchHHHH
Confidence 3688899998886 33444 7889999999887532 22221 223445566777654432 126899999999999
Q ss_pred HHHHHHhcC--------CC-CeEEEcCCCCCChHHHHHHc-CCEEEE---ecCCCC---CCCcCCHHHHHhhhccCCcEE
Q 012095 169 LQAVLAVCS--------PG-DEVIIPAPFWVSYPEMARIA-DATPVI---LPTRIS---ENFLLDPKVLESKLTEKSRLL 232 (471)
Q Consensus 169 ~~~~~~l~~--------~g-d~Vlv~~p~y~~~~~~~~~~-G~~~~~---v~~~~~---~~~~ld~e~l~~~l~~~~~~i 232 (471)
..+++.... ++ ..|+....+|++....+... |..... -|.... -.| .|++.+++++.++..+.
T Consensus 112 e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~~~~~~~aa 190 (408)
T PRK04612 112 EAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDF-NDVEALEAAMAGGDVAA 190 (408)
T ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCC-CCHHHHHHhhCCCCEEE
Confidence 988876431 22 46888899898876544322 211100 111100 012 27899998887666777
Q ss_pred EEcCCCCCcccCCC--HHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchh
Q 012095 233 ILCSPSNPTGSVYP--KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWR 310 (471)
Q Consensus 233 ~i~~p~NPtG~~~~--~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R 310 (471)
+|..|.+++|.+++ ++.+++|.++|++| ++++|+||+|.++...|. .+... ..+.+..+.||||.++ +|+|
T Consensus 191 vi~eP~~~~gg~~~~~~~~l~~l~~l~~~~-g~llI~DEv~tg~gr~G~---~~a~~--~~~~~pdi~t~~K~l~-~G~p 263 (408)
T PRK04612 191 VMLEPIQGEGGVMPAAPGFLARVRALCDQH-DALLVLDEIQCGMGRTGT---LFAHW--QEQVTPDIVTLAKALG-GGFP 263 (408)
T ss_pred EEECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCCc---hhhhh--hcCCCCCEEEEcchhc-CCCc
Confidence 78888888886655 67899999999999 999999999998655442 11111 1345567889999998 9999
Q ss_pred heeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCC----CCCeeeCC
Q 012095 311 LGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EGVKMSEP 386 (471)
Q Consensus 311 ~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~----~g~~~~~p 386 (471)
+||+++++++++.+.......+++.+++++.++.+.|+.- ++ +++.++.+++-+++.+.|+++ +-+.....
T Consensus 264 iga~~~~~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~---~~--~~l~~~~~~~g~~l~~~l~~l~~~~~~i~~vrg 338 (408)
T PRK04612 264 IGAMLAGPKVAETMQFGAHGTTFGGNPLAAAVARVALRKL---AS--PQIAANVARQSAALRAGLEALNAEFGVFAQVRG 338 (408)
T ss_pred eEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHHHHhhCCCeeeeec
Confidence 9999999999888766555567788999999999998752 11 244555555555555555543 21223344
Q ss_pred CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012095 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 387 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~ 464 (471)
.|- ++.+.+..... .....+.+.|+++ ||++.|.. .+.+|+.... +++++++++++|++++.+
T Consensus 339 ~Gl-~~~i~~~~~~~---------~~a~~i~~~l~~~-Gvlv~~~g----~~~lRl~Ppl~it~eeid~~l~~l~~~l~~ 403 (408)
T PRK04612 339 RGL-MLGAVLAPAHA---------GQAGAILDLAAEH-GLLLLQAG----PDVLRFVPALNLTDAELADGLARLRLALAD 403 (408)
T ss_pred cce-EEEEEecCchh---------hHHHHHHHHHHHC-CeEEeeCC----CCEEEEcCCccCCHHHHHHHHHHHHHHHHH
Confidence 444 34555532100 1356777777765 99997732 3789998765 899999999999999986
Q ss_pred h
Q 012095 465 L 465 (471)
Q Consensus 465 ~ 465 (471)
+
T Consensus 404 ~ 404 (408)
T PRK04612 404 Y 404 (408)
T ss_pred H
Confidence 4
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.9e-22 Score=198.45 Aligned_cols=281 Identities=14% Similarity=0.140 Sum_probs=191.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChH----HHHHHcCCEEEEecC
Q 012095 133 GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVILPT 208 (471)
Q Consensus 133 G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~G~~~~~v~~ 208 (471)
-..+|++.+++++ | . +..+++++++.++..++.++++|||+|+++.+.|.... ..+...|++++.++.
T Consensus 64 ~~~~le~~lA~l~----g---~-~~av~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 135 (389)
T PRK05968 64 TVRAFEEMLAKLE----G---A-EDARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDG 135 (389)
T ss_pred hHHHHHHHHHHHh----C---C-CcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCC
Confidence 3567777777775 3 2 23444556668999889889999999999999998643 456678999998864
Q ss_pred CCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCC
Q 012095 209 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 288 (471)
Q Consensus 209 ~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 288 (471)
.|++++++++ +++|+|++++|+||++.. .++++|+++|++| +++||+|++|....+.. ++ .
T Consensus 136 -------~d~~~l~~~i-~~tklV~ie~pt~~~~~~---~dl~~i~~la~~~-gi~vivD~a~a~~~~~~----p~-~-- 196 (389)
T PRK05968 136 -------RDEEAVAKAL-PGAKLLYLESPTSWVFEL---QDVAALAALAKRH-GVVTMIDNSWASPVFQR----PI-T-- 196 (389)
T ss_pred -------CCHHHHHHhc-ccCCEEEEECCCCCCCcH---HHHHHHHHHHHHc-CCEEEEECCCcchhccC----ch-h--
Confidence 2889999988 578999998777766555 5599999999999 99999999997644221 11 1
Q ss_pred CCCCceEEEecCCcccCccc-hhheeeEcCHHHHHHHHHHHh-cccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 012095 289 GMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQS-QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366 (471)
Q Consensus 289 ~~~~~~i~~~S~SK~~g~~G-~R~G~v~~~~~~i~~l~~~~~-~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~ 366 (471)
.+..+++.|++|.++.+| .+.|+++++++++++++.... ....+.+++.+..+...|+. +....++..+
T Consensus 197 --~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~t-------l~~r~~~~~~ 267 (389)
T PRK05968 197 --LGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLGAKLSPFEAWLLLRGLRT-------LPLRMKAHEA 267 (389)
T ss_pred --cCCcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhCCCCCChHHHHHHHcccCc-------HHHHHHHHHH
Confidence 123488899999997544 578999999999988876543 23445666665555444432 4555666667
Q ss_pred HHHHHHHHhcCCCCCeeeC-CC------------cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC
Q 012095 367 RRDFLVKSFGELEGVKMSE-PQ------------GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 433 (471)
Q Consensus 367 ~r~~l~~~L~~~~g~~~~~-p~------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~ 433 (471)
+...+.+.|++.|+++++. |. +|+ +.+++.+. .+..+|++.|- ..++.+.-|..
T Consensus 268 ~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~-~sf~~~~~-----------~~~~~f~~~L~-~~~~~~s~G~~ 334 (389)
T PRK05968 268 SALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGL-FSFIFREG-----------IDVRAFADALK-LFRLGVSWGGH 334 (389)
T ss_pred HHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceE-EEEEECCH-----------HHHHHHHHhCC-ccEEecCCCCC
Confidence 7888889999888875442 31 234 44555421 14567887764 33554444433
Q ss_pred CC----------------------C-CCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012095 434 FG----------------------D-DTCIRISYAASLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 434 f~----------------------~-~~~iRis~~~~~e~i~~~~~~l~~~l~~ 464 (471)
+. . ++.||+|++.. +.+..++.|+++++.
T Consensus 335 ~slv~p~~~~~~~~~~~~~~~~~gi~~~liR~SvGlE--~~~dl~~dl~~al~~ 386 (389)
T PRK05968 335 ESLVVPAEVVLQQKAQPNSAARFGVSPRSVRLHVGLE--GTEALWADLEQALAA 386 (389)
T ss_pred CceeeeCcccccccCCHHHHHhcCCCCCeEEEEeccC--CHHHHHHHHHHHHHH
Confidence 32 1 46899999982 233444445555543
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.9e-22 Score=189.97 Aligned_cols=321 Identities=22% Similarity=0.209 Sum_probs=233.5
Q ss_pred ChHHHHHHHHHHHHcCC------CCCCC--CCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh--cC-
Q 012095 109 TPVLIAEAGINAIREGF------TRYTP--NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV--CS- 177 (471)
Q Consensus 109 ~p~~v~~a~~~~~~~~~------~~Y~~--~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l--~~- 177 (471)
+.+.+++++...+.... +.|+- .....+-|+.|++.+ | .++++|++|+|+||+.++++... ..
T Consensus 13 ~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~ll----g--a~~~eIiFTSG~TEsnNlaI~g~~~a~~ 86 (386)
T COG1104 13 VDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLL----G--ADPEEIIFTSGATESNNLAIKGAALAYR 86 (386)
T ss_pred CCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHh----C--CCCCeEEEecCCcHHHHHHHHhhHHhhh
Confidence 35788888888776531 12210 122345566666665 4 57799999999999999999873 22
Q ss_pred ---CCCeEEEcCCCCCChHHHHHHc---CCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHH
Q 012095 178 ---PGDEVIIPAPFWVSYPEMARIA---DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 251 (471)
Q Consensus 178 ---~gd~Vlv~~p~y~~~~~~~~~~---G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~ 251 (471)
.|..|++..-.|+...+.++.+ |.++.++|++. +..+|+++|+++|+++|.+|.|...||-||+++| ++
T Consensus 87 ~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~--~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQp---I~ 161 (386)
T COG1104 87 NAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDS--NGLVDLEQLEEALRPDTILVSIMHANNETGTIQP---IA 161 (386)
T ss_pred cccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCC--CCeEcHHHHHHhcCCCceEEEEEecccCeeeccc---HH
Confidence 4789999999999888877766 99999999985 4469999999999999999999999999999999 99
Q ss_pred HHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHH-HHHH----H
Q 012095 252 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV-AACN----K 326 (471)
Q Consensus 252 ~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i-~~l~----~ 326 (471)
+|.++|+++ ++++.+|.+... |.-+..+..+ .-.+...|-.|.+|..| +|.++.++.+. +-+. .
T Consensus 162 ei~~i~k~~-~i~fHvDAvQa~----Gkipi~~~~~----~vD~ls~SaHK~~GpkG--iGaLyv~~~~~~~p~i~GGgQ 230 (386)
T COG1104 162 EIGEICKER-GILFHVDAVQAV----GKIPIDLEEL----GVDLLSFSAHKFGGPKG--IGALYVRPGVRLEPLIHGGGQ 230 (386)
T ss_pred HHHHHHHHc-CCeEEEehhhhc----Cceecccccc----CcceEEeehhhccCCCc--eEEEEECCCCccCceeccCcC
Confidence 999999999 899999999875 3322222222 22355566679999777 88888654322 1111 0
Q ss_pred HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCC-CCCeeeCCC---cceEEeEecCCccCC
Q 012095 327 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL-EGVKMSEPQ---GAFYLFIDFSTYYGS 402 (471)
Q Consensus 327 ~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~g~~~~~p~---~g~~~~~~~~~~~~~ 402 (471)
-+..-..+.+.++..+..++++. ..+.++....++.+.|+++.+.|.+. |++.+.... -...+.+.+|..
T Consensus 231 E~g~RsGTenv~~Ivg~~~A~~~---a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv--- 304 (386)
T COG1104 231 ERGLRSGTENVPGIVGFGKAAEI---AVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGV--- 304 (386)
T ss_pred CCCCCCCCccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCC---
Confidence 01111223456666666677765 35667788888999999999999975 777665332 233455666643
Q ss_pred cccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------------------CCcEEEEeec--CHHHHHHHHHHHHHH
Q 012095 403 EAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------------------DTCIRISYAA--SLTTLQAAVERIKKG 461 (471)
Q Consensus 403 ~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~-------------------~~~iRis~~~--~~e~i~~~~~~l~~~ 461 (471)
..+.+... ++..||++..|+.+.. .+.|||||+. ++++++.+++.|.++
T Consensus 305 ---------~gE~ll~~-L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~ 374 (386)
T COG1104 305 ---------EGESLLLA-LDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEI 374 (386)
T ss_pred ---------cHHHHHHh-ccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 55666654 5667999999998853 1479999998 889999999999999
Q ss_pred HHhhCC
Q 012095 462 LLTLRP 467 (471)
Q Consensus 462 l~~~~~ 467 (471)
+++++.
T Consensus 375 i~~lr~ 380 (386)
T COG1104 375 IKRLRE 380 (386)
T ss_pred HHHHhh
Confidence 988764
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-21 Score=195.27 Aligned_cols=212 Identities=14% Similarity=0.145 Sum_probs=155.5
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChH----HHHHHcCCEEEEecCC
Q 012095 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVILPTR 209 (471)
Q Consensus 134 ~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~G~~~~~v~~~ 209 (471)
..+|++.++++. | ..+.+++++| +.++..++. ++++||+|++++|.|.+.. ..++..|++++.++..
T Consensus 56 ~~~le~~lA~l~----g---~~~~v~~~sG-~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~ 126 (390)
T PRK08064 56 REALEDIIAELE----G---GTKGFAFASG-MAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMT 126 (390)
T ss_pred HHHHHHHHHHHh----C---CCCeEEECCH-HHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECCC
Confidence 456777777775 4 2245666555 567887775 7789999999999998543 3456689999999862
Q ss_pred CCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCC
Q 012095 210 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289 (471)
Q Consensus 210 ~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 289 (471)
|++.+++++++++++|++++|+||||.+.+ +++|.++|+++ ++++|+|++|...... .++ .
T Consensus 127 -------d~~~l~~~l~~~tklV~l~~p~NptG~~~d---l~~I~~la~~~-g~~vvvD~a~~~~~~~----~~~-~--- 187 (390)
T PRK08064 127 -------NLEEVAQNIKPNTKLFYVETPSNPLLKVTD---IRGVVKLAKAI-GCLTFVDNTFLTPLLQ----KPL-D--- 187 (390)
T ss_pred -------CHHHHHHhcCCCceEEEEECCCCCCcEecc---HHHHHHHHHHc-CCEEEEECCCCccccc----Cch-h---
Confidence 789999999999999999999999999998 88999999999 9999999999753211 111 1
Q ss_pred CCCceEEEecCCcccC-ccchhheeeEc-CHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Q 012095 290 MWERTLTVNGFSKAFA-MTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367 (471)
Q Consensus 290 ~~~~~i~~~S~SK~~g-~~G~R~G~v~~-~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~ 367 (471)
.+..+++.|++|.++ -+|...|++++ ++++++.+...+..++...++..... ++.. ...+....++..++
T Consensus 188 -~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l---~~~g----l~tl~~R~~~~~~~ 259 (390)
T PRK08064 188 -LGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWL---VLRG----LKTLHVRLEHSSET 259 (390)
T ss_pred -hCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHH---HHcc----cCcHHHHHHHHHHH
Confidence 244589999999985 33455677665 57899999888776665555555443 2222 23355666666777
Q ss_pred HHHHHHHhcCCCCC
Q 012095 368 RDFLVKSFGELEGV 381 (471)
Q Consensus 368 r~~l~~~L~~~~g~ 381 (471)
+..+.+.|++.|.+
T Consensus 260 a~~la~~L~~~~~v 273 (390)
T PRK08064 260 ANKIALYLQEHPKV 273 (390)
T ss_pred HHHHHHHHhcCCCc
Confidence 88888888876543
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-21 Score=194.59 Aligned_cols=355 Identities=11% Similarity=0.079 Sum_probs=220.3
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
.+|+.+||+..|. ..++. ++.+.+++.+++.+.. .+.......+.+..+++.+.+..+. .-+.++++++++++.
T Consensus 38 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~-~~~~~~~~~~~~~~la~~L~~~~p~--~~~~v~f~~sGsEAv 114 (443)
T PRK08360 38 IEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLI-HYTPIYGFPVEPLLLAEKLIEIAPG--DNPKVSFGLSGSDAN 114 (443)
T ss_pred CCCCEEEEccccHhhcccCCCCHHHHHHHHHHHHhcc-CccccccCcHHHHHHHHHHHHhCCC--CCCEEEEcCCHHHHH
Confidence 3688899998885 44554 7889999999987632 2222223345666777777655432 226899999999999
Q ss_pred HHHHHHhcC-CC-CeEEEcCCCCCChHHH-HHHcCC------------EEEEecCCCCC--CCc--------CCHHHHHh
Q 012095 169 LQAVLAVCS-PG-DEVIIPAPFWVSYPEM-ARIADA------------TPVILPTRISE--NFL--------LDPKVLES 223 (471)
Q Consensus 169 ~~~~~~l~~-~g-d~Vlv~~p~y~~~~~~-~~~~G~------------~~~~v~~~~~~--~~~--------ld~e~l~~ 223 (471)
..+++.... .| ..|+....+|++.... ....|. .+..+|..... .+. -+++.+++
T Consensus 115 e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (443)
T PRK08360 115 DGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKE 194 (443)
T ss_pred HHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHH
Confidence 988886531 23 5688778788775432 222221 12223322100 010 12445556
Q ss_pred hhc-----cCCcEEEEcCCCCCcccCCC-HHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEE
Q 012095 224 KLT-----EKSRLLILCSPSNPTGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTV 297 (471)
Q Consensus 224 ~l~-----~~~~~i~i~~p~NPtG~~~~-~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~ 297 (471)
.+. +++++|++...+||+|.+++ .+.+++|.++|++| |+++|+||+|.++.+.+.. .......- ... +
T Consensus 195 ~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~~g~gr~G~~-~a~~~~~~-~pD---i 268 (443)
T PRK08360 195 KFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEH-GILLVVDEVQSGLGRTGKW-FAIEHFGV-EPD---I 268 (443)
T ss_pred HHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCccc-hhhhhcCC-CCC---E
Confidence 553 35667777644799998887 56899999999999 9999999999987655431 11111211 122 2
Q ss_pred ecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC
Q 012095 298 NGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377 (471)
Q Consensus 298 ~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 377 (471)
-+|||.++ +|+|+||+++++++++.+.......+++.+++.+.++.++|+.-.. .+.++++.+.-...++.+.+...+
T Consensus 269 itlsK~l~-~G~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~-~~l~~~~~~~g~~l~~~L~~l~~~ 346 (443)
T PRK08360 269 ITLGKPLG-GGLPISATIGRAEIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEE-KNLLKRAEKLGNYTKKRLEEMKKK 346 (443)
T ss_pred EEeccccc-CCceeEEEEEcHHHHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHh
Confidence 36799999 9999999999999999887554556777899999999998875211 122333333223333333332223
Q ss_pred CCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHH
Q 012095 378 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAV 455 (471)
Q Consensus 378 ~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~i~~~~ 455 (471)
.+-+..+...|-+ +-+.+.+.... ... .......+...|+++ ||.+.+.. .+.+|++.. .+++++++++
T Consensus 347 ~~~v~~vrg~Gl~-~gie~~~~~~~--~~~-~~~~~~~~~~~l~~~-Gi~~~~~~----~~~lr~~P~l~~t~~~id~~~ 417 (443)
T PRK08360 347 HELIGDVRGIGLM-IGVDLVKDRET--KER-AYEEAAKVVWRAWEL-GLIVTFFS----GNVLRIQPPLTIEKEVLDEGL 417 (443)
T ss_pred CCCeeeeeccceE-EEEEEecCCcc--cCc-cHHHHHHHHHHHHHC-CeEEeecC----CCEEEEeCCCCCCHHHHHHHH
Confidence 3323333444443 44444211000 000 001235677877765 99886532 367999655 4999999999
Q ss_pred HHHHHHHHhhC
Q 012095 456 ERIKKGLLTLR 466 (471)
Q Consensus 456 ~~l~~~l~~~~ 466 (471)
++|.++++++.
T Consensus 418 ~~l~~~l~~~~ 428 (443)
T PRK08360 418 DILEEAIEDVE 428 (443)
T ss_pred HHHHHHHHHHH
Confidence 99999998753
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=198.01 Aligned_cols=161 Identities=16% Similarity=0.204 Sum_probs=131.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChH----HHHHHcCCEEEE
Q 012095 130 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVI 205 (471)
Q Consensus 130 ~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~G~~~~~ 205 (471)
+.+-..+|++.+++++ | .+..++++++++++..++.+++++||+|+++++.|.+.. ..++..|++++.
T Consensus 55 ~~p~~~~le~~lA~l~----g----~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~ 126 (418)
T TIGR01326 55 MNPTTDVLEQRIAALE----G----GVAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRF 126 (418)
T ss_pred CChhHHHHHHHHHHHh----C----CCeEEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEE
Confidence 3444567777777775 3 246788999999999999999999999999999986543 446778999999
Q ss_pred ecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccc
Q 012095 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 285 (471)
Q Consensus 206 v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~ 285 (471)
++.+ |++++++++++++++|++++|+||||.+.+ +++|+++|+++ ++++|+|++|..... ..
T Consensus 127 v~~~-------d~~~l~~~l~~~t~~V~le~p~NPtg~v~d---l~~I~~la~~~-~i~livD~t~~~~~~-------~~ 188 (418)
T TIGR01326 127 VDPD-------DPEEFEKAIDENTKAVFAETIGNPAINVPD---IEAIAEVAHAH-GVPLIVDNTFATPYL-------CR 188 (418)
T ss_pred ECCC-------CHHHHHHhcCcCCeEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCchhhc-------CC
Confidence 8742 899999999989999999999999999998 88999999999 999999999974211 11
Q ss_pred cCCCCCCceEEEecCCcccCccchhheeeEcCH
Q 012095 286 SLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 318 (471)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~ 318 (471)
.+ ..+..+++.||||.++.+|+|+||++++.
T Consensus 189 ~l--~~g~Divv~S~sK~l~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 189 PI--DHGADIVVHSATKYIGGHGTAIGGVIVDG 219 (418)
T ss_pred ch--hcCCeEEEECccccccCCccceEEEEEec
Confidence 11 13567999999999998999999998854
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-21 Score=193.73 Aligned_cols=290 Identities=16% Similarity=0.192 Sum_probs=193.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH----HHHHcCC
Q 012095 126 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADA 201 (471)
Q Consensus 126 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~G~ 201 (471)
..|+.. |.+. ++.+++.+++.+|. ++++++++++.++..++. ++++||+|+++++.|.++.. .+...|+
T Consensus 39 ~~Y~r~-~~p~-~~~le~~la~l~g~----~~~l~~~sG~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~ 111 (378)
T TIGR01329 39 YDYTRS-GNPT-RTALESLLAKLDKA----DRAFAFSSGMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLTQVVPRSGV 111 (378)
T ss_pred CccCCC-CChH-HHHHHHHHHHHhCC----CcEEEECCHHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHHHHHHHcCc
Confidence 456543 3332 45555555555552 566777777789987775 78999999999999988764 3456899
Q ss_pred EEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCc
Q 012095 202 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 281 (471)
Q Consensus 202 ~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~ 281 (471)
+++.++.. |++.+++++++++|+|++++|+||||.+.+ +++|+++|+++ ++++|+|++|.... ..
T Consensus 112 ~v~~vd~~-------d~~~le~~i~~~tklv~le~psnptg~v~d---l~~I~~la~~~-g~~vivD~a~~~~~----~~ 176 (378)
T TIGR01329 112 VVVHVDTT-------DLDKVKAALGPKTKLVLLESPTNPLQKIVD---IRKISEMAHAQ-NALVVVDNTMMSPL----LC 176 (378)
T ss_pred EEEEeCCC-------CHHHHHHhcCcCceEEEEECCCCCCCeeec---HHHHHHHHHHc-CCEEEEECCCcccc----cC
Confidence 99999852 889999999999999999999999999998 99999999999 99999999985321 11
Q ss_pred cccccCCCCCCceEEEecCCcccCc-cchhheeeEc-CHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHH
Q 012095 282 TSFASLPGMWERTLTVNGFSKAFAM-TGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 359 (471)
Q Consensus 282 ~~~~~~~~~~~~~i~~~S~SK~~g~-~G~R~G~v~~-~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~ 359 (471)
.++ .. +-.+++.|++|.++- .+.+.|++++ ++++.+++...+.....+.+++....+...| +.+..
T Consensus 177 ~~l-~~----g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l-------~tl~~ 244 (378)
T TIGR01329 177 NPL-EL----GADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGI-------KTLAI 244 (378)
T ss_pred Chh-hc----CCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccC-------CCHHH
Confidence 111 11 334999999998852 3467899987 5566677776665455556665543322222 23445
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCee-eC-----------------CCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHH
Q 012095 360 MVKAFRERRDFLVKSFGELEGVKM-SE-----------------PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL 421 (471)
Q Consensus 360 ~~~~~~~~r~~l~~~L~~~~g~~~-~~-----------------p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll 421 (471)
..++-.++...+.+.|++.|.+.. .. ..+++ +.+.+... ....+|++.|
T Consensus 245 R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~-~sf~~~~~-----------~~~~~~~~~L- 311 (378)
T TIGR01329 245 RIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSV-LSFETGSV-----------ALSKRLVEAT- 311 (378)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceE-EEEEECCH-----------HHHHHHHHhC-
Confidence 555556666666667766554321 11 12344 44455321 1256788876
Q ss_pred HcCCEEEECCCCCC-----------------------CCCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012095 422 DKAQVALVPGDAFG-----------------------DDTCIRISYAASLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 422 ~~~gV~v~pg~~f~-----------------------~~~~iRis~~~~~e~i~~~~~~l~~~l~~ 464 (471)
+..++.+.-|.... .++.||+|++.. +.+..++.|++++++
T Consensus 312 ~~~~i~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE--~~~dl~~dl~~al~~ 375 (378)
T TIGR01329 312 KLFSITVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGIE--DVDDLISDLDIAFVT 375 (378)
T ss_pred cCcccccCCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEeccC--CHHHHHHHHHHHHHh
Confidence 55577776665432 135899999983 345556666666654
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-21 Score=192.07 Aligned_cols=220 Identities=13% Similarity=0.152 Sum_probs=164.3
Q ss_pred CCCCCCCCC---HHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH----HHH
Q 012095 126 TRYTPNAGT---LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARI 198 (471)
Q Consensus 126 ~~Y~~~~G~---~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~ 198 (471)
..|+. .|. ..|++.++++. ..+++++++|+++++..++.+++++||+|++++|.|...... .+.
T Consensus 42 ~~Y~r-~gnPt~~~lE~~lA~l~--------g~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~ 112 (377)
T TIGR01324 42 LTYGR-RGTLTHFALQDAMCELE--------GGAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKR 112 (377)
T ss_pred CcccC-CCCccHHHHHHHHHHHh--------CCCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHh
Confidence 44652 444 57888888775 246899999999999999999999999999999999876643 356
Q ss_pred cCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCC
Q 012095 199 ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 278 (471)
Q Consensus 199 ~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~ 278 (471)
.|+++..++.. +.+.+++++++++|+|++++|+||+|...+ +++|+++|+++ ++++|+|++|......
T Consensus 113 ~gi~v~~~d~~-------~~e~l~~~i~~~tklV~lesp~Np~g~~~d---l~~I~~la~~~-g~~livD~t~a~g~~~- 180 (377)
T TIGR01324 113 MGVDITYYDPL-------IGEDIATLIQPNTKVLFLEAPSSITFEIQD---IPAIAKAARNP-GIVIMIDNTWAAGLLF- 180 (377)
T ss_pred cCcEEEEECCC-------CHHHHHHhcCCCceEEEEECCCCCCCcHHH---HHHHHHHHHHc-CCEEEEECCCcccccc-
Confidence 78888777532 238899999999999999999999998877 99999999999 9999999999853221
Q ss_pred CCccccccCCCCCCceEEEecCCcccC-ccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHH
Q 012095 279 ATHTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVV 357 (471)
Q Consensus 279 ~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~ 357 (471)
.+ + ..+..+++.|++|.++ -++...|+++++++.++.+......++.+.++.....+...++ .+
T Consensus 181 ---~p---l--~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~-------tl 245 (377)
T TIGR01324 181 ---KP---L--EHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSYLMGQMVDADDAYTTLRGLR-------TL 245 (377)
T ss_pred ---Cc---c--ccCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHHHHHhCCCCCHHHHHHHHhhhh-------hH
Confidence 11 1 2355699999999995 3346679999999888877765555555566655444333333 34
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCC
Q 012095 358 SKMVKAFRERRDFLVKSFGELEGV 381 (471)
Q Consensus 358 ~~~~~~~~~~r~~l~~~L~~~~g~ 381 (471)
....++..++...+.+.|++.|.+
T Consensus 246 ~~R~~~~~~~a~~la~~L~~~p~v 269 (377)
T TIGR01324 246 GVRLKQHQESSLAIAKWLSEQPEV 269 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCc
Confidence 455666677777777788776554
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-20 Score=189.96 Aligned_cols=310 Identities=18% Similarity=0.182 Sum_probs=210.8
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCC
Q 012095 110 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPF 188 (471)
Q Consensus 110 p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~ 188 (471)
.+...+++.+++..+.. ....+..+|+++++++++ .++.++++|+++++..++.++ ++|||+|+++.|+
T Consensus 9 ~~~~~~~v~~~~~~~~~--~~g~~~~~le~~la~~~g--------~~~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~ 78 (380)
T TIGR03588 9 DQDDIDAVVEVLKSDFL--TQGPTVPAFEEALAEYVG--------AKYAVAFNSATSALHIACLALGVGPGDRVWTTPIT 78 (380)
T ss_pred CHHHHHHHHHHHhcCCc--cCChhHHHHHHHHHHHHC--------CCeEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcc
Confidence 34457777787766543 334567899999999873 235666778899999999998 7899999999999
Q ss_pred CCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc----cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeE
Q 012095 189 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT----EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLL 264 (471)
Q Consensus 189 y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~----~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ 264 (471)
|..+...+...|++++.++++++ ++.+|++++++.++ +++++|++ .|++|...+ +++|.++|++| +++
T Consensus 79 ~~~~~~~~~~~G~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~t~~v~~---~~~~G~~~~---~~~i~~l~~~~-~~~ 150 (380)
T TIGR03588 79 FVATANCALYCGAKVDFVDIDPD-TGNIDEDALEKKLAAAKGKLPKAIVP---VDFAGKSVD---MQAIAALAKKH-GLK 150 (380)
T ss_pred hHHHHHHHHHcCCEEEEEecCCC-cCCcCHHHHHHHhhcccCCCceEEEE---eCCCCccCC---HHHHHHHHHHc-CCE
Confidence 99999999999999999998753 46799999999998 68898885 456898888 89999999999 999
Q ss_pred EEEccCCCccc-cCCCCccccccCCCCCCceEEEecCC--cccCccchhheeeEc-CHHHHHHHHHHHhcc---------
Q 012095 265 VLSDEIYEHII-YAPATHTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAG-PKHFVAACNKIQSQF--------- 331 (471)
Q Consensus 265 ii~De~y~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~g~~G~R~G~v~~-~~~~i~~l~~~~~~~--------- 331 (471)
||+|+++.... +++.. +... ....+.+.||+ |.++. | ..|+++. ++++.++++..+...
T Consensus 151 lI~D~a~a~g~~~~~~~---~g~~---~~~d~~~~S~~~~K~~~~-~-~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~ 222 (380)
T TIGR03588 151 IIEDASHALGAEYGGKP---VGNC---RYADATVFSFHPVKIITT-A-EGGAVTTNDEELAERMRLLRSHGITKDPLLFE 222 (380)
T ss_pred EEEECCCcccCccCCEe---CCCc---cccceEEEecCCCCcccc-c-CceEEEECCHHHHHHHHHHHHCCCCCCccccc
Confidence 99999998642 33321 1110 01236677775 88863 3 4577775 567777776543211
Q ss_pred ----------------cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC-C---cceE
Q 012095 332 ----------------TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-Q---GAFY 391 (471)
Q Consensus 332 ----------------~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p-~---~g~~ 391 (471)
+..++.+....+...|+ .+++..++-+++.+++.+.|.+++++....+ . .+++
T Consensus 223 ~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~-------~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 295 (380)
T TIGR03588 223 KQDEGPWYYEQQELGFNYRMTDIQAALGLSQLK-------KLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWH 295 (380)
T ss_pred ccccCcceeeeeccccccCccHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEE
Confidence 11112222222222222 2566667777788888999998877664432 1 1222
Q ss_pred E-eEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC-----------CC---C-------CcEEEEeec--C
Q 012095 392 L-FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF-----------GD---D-------TCIRISYAA--S 447 (471)
Q Consensus 392 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f-----------~~---~-------~~iRis~~~--~ 447 (471)
+ .+.++...+ .+..++.+.|.++ ||.+...... .. + ..+++.+.. +
T Consensus 296 ~~~i~~~~~~~---------~~r~~l~~~L~~~-gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~ 365 (380)
T TIGR03588 296 LYPILLDQEFG---------CTRKEVFEALRAA-GIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALT 365 (380)
T ss_pred EEEEEECCcCC---------CCHHHHHHHHHHC-CCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCC
Confidence 2 333432100 2567888887655 8887643211 00 1 357777775 8
Q ss_pred HHHHHHHHHHHHHHH
Q 012095 448 LTTLQAAVERIKKGL 462 (471)
Q Consensus 448 ~e~i~~~~~~l~~~l 462 (471)
+++++..++.|++++
T Consensus 366 ~~dv~~i~~~l~~~~ 380 (380)
T TIGR03588 366 LEQQQRVVETLRKVL 380 (380)
T ss_pred HHHHHHHHHHHHHhC
Confidence 899999999988764
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-21 Score=193.75 Aligned_cols=313 Identities=19% Similarity=0.245 Sum_probs=225.8
Q ss_pred CChHHHHHHHHHHHHcCCC-----CCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcEEEeCChHHHHHHHHHHh---cCC
Q 012095 108 DTPVLIAEAGINAIREGFT-----RYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSILQAVLAV---CSP 178 (471)
Q Consensus 108 ~~p~~v~~a~~~~~~~~~~-----~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~-~~i~it~G~~~al~~~~~~l---~~~ 178 (471)
+.|+.+.+++.+.+.+... .+.......++.+.+.+.+++..|. ++ ++|++++|+++++..++..+ +++
T Consensus 10 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~--~~~~~v~~~~~~t~a~~~~~~~l~~~~~~ 87 (371)
T PF00266_consen 10 PMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGA--PPDEEVVFTSNGTEALNAVASSLLNPLKP 87 (371)
T ss_dssp B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTS--STTEEEEEESSHHHHHHHHHHHHHHHGTT
T ss_pred CCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCC--ccccccccccccchhhhhhhhcccccccc
Confidence 3578899999888764211 1111111244445555555555664 45 79999999999999999999 789
Q ss_pred CCeEEEcCCCCCChH----HHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHH
Q 012095 179 GDEVIIPAPFWVSYP----EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 254 (471)
Q Consensus 179 gd~Vlv~~p~y~~~~----~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~ 254 (471)
||+|++..-.|++.. ...+..|++++.++.+.++ .+|++++++.+++++++++++..+|-||..++ +++|.
T Consensus 88 g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~--~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~p---i~~I~ 162 (371)
T PF00266_consen 88 GDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGG--SLDLEDLEEALNPDTRLVSISHVENSTGVRNP---IEEIA 162 (371)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTS--SCSHHHHHHHHHTTESEEEEESBETTTTBBSS---HHHHH
T ss_pred ccccccccccccccccccccccccchhhhccccccccc--hhhhhhhhhhhccccceEEeecccccccEEee---eceeh
Confidence 999999998887766 3445779999999886543 58999999999999999999999999999999 99999
Q ss_pred HHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHh-----
Q 012095 255 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS----- 329 (471)
Q Consensus 255 ~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~----- 329 (471)
++|+++ ++++++|-+++... ....+.. .+..+++.|..|.+|-+| +|+++.+++.++++.....
T Consensus 163 ~~~~~~-~~~~~vD~~~~~g~----~~id~~~----~~~D~~~~s~~Kl~gp~G--~g~l~v~~~~~~~~~p~~~~~~~~ 231 (371)
T PF00266_consen 163 KLAHEY-GALLVVDAAQSAGC----VPIDLDE----LGADFLVFSSHKLGGPPG--LGFLYVRPEAIERLRPAKPGGGYL 231 (371)
T ss_dssp HHHHHT-TSEEEEE-TTTTTT----SS--TTT----TTESEEEEESTSTTSSST--EEEEEEEHHHHHHHHTSSSSSSTT
T ss_pred hhhhcc-CCceeEechhcccc----ccccccc----cccceeeecccccCCCCc--hhhheehhhhhhcccccccccccc
Confidence 999999 99999999987522 1122221 344589999999445444 7999999999888732111
Q ss_pred ----------------cccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC-----Cc
Q 012095 330 ----------------QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-----QG 388 (471)
Q Consensus 330 ----------------~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p-----~~ 388 (471)
....+++.+...++..+++.- .+..++++.++..+..+++.+.|.+++++.+..| .+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~--~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 309 (371)
T PF00266_consen 232 DFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLL--EEIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRP 309 (371)
T ss_dssp THHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGT
T ss_pred ccccchhcccccccccccccceeeehhhhHHHHHhhh--hccccccchhhhhhHHHHHHhhhhcCCceeEeeeccccccc
Confidence 011245666666666666641 1345777888899999999999999988777543 23
Q ss_pred ceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC--------CCCcEEEEeec--CHHHHHHH
Q 012095 389 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--------DDTCIRISYAA--SLTTLQAA 454 (471)
Q Consensus 389 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~--------~~~~iRis~~~--~~e~i~~~ 454 (471)
+. +.+.++.. +..++.++|.++ ||.+..|..+. ..+.||+|++. +++|++++
T Consensus 310 ~i-~~~~~~~~------------~~~~~~~~L~~~-~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 310 SI-VSFNLPGS------------DADDVVKYLEER-GIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp TE-EEEEETTS------------SHHHHHHHHHHH-TEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred ce-EEEeecCC------------CHHHHHHHHhhc-CEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 44 55566543 678889988877 99999987654 34899999987 88998874
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.6e-21 Score=192.60 Aligned_cols=216 Identities=19% Similarity=0.242 Sum_probs=158.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChH----HHHHHcCCEEEEec
Q 012095 132 AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVILP 207 (471)
Q Consensus 132 ~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~G~~~~~v~ 207 (471)
+-...|.+.++++. | .+..++++|+++++..++..++++||+|+++++.|.... ..++..|++++.++
T Consensus 64 p~~~~Le~~lA~le----g----~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd 135 (431)
T PRK08248 64 PTTDVFEKRIAALE----G----GIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVD 135 (431)
T ss_pred chHHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEEC
Confidence 33456666666664 3 357788999999999999999999999999999987643 34567899999997
Q ss_pred CCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccC
Q 012095 208 TRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL 287 (471)
Q Consensus 208 ~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~ 287 (471)
. .|++++++++++++++|++++|+||||.+++ +++|+++|+++ ++++|+|++|.. +....+ +
T Consensus 136 ~-------~d~e~l~~ai~~~tklV~l~sp~NPtG~v~d---i~~I~~la~~~-gi~vIvD~t~a~----~~~~~p---l 197 (431)
T PRK08248 136 P-------SDPENFEAAITDKTKALFAETIGNPKGDVLD---IEAVAAIAHEH-GIPLIVDNTFAS----PYLLRP---I 197 (431)
T ss_pred C-------CCHHHHHHhcCCCCeEEEEECCCCCCCcccC---HHHHHHHHHHc-CCEEEEeCCCCc----cccCCh---h
Confidence 5 2899999999989999999999999999999 78999999999 999999999862 111111 1
Q ss_pred CCCCCceEEEecCCcccCccchhheeeEcC-HHH---------------------------------HHHHHHHHhcccC
Q 012095 288 PGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHF---------------------------------VAACNKIQSQFTS 333 (471)
Q Consensus 288 ~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~-~~~---------------------------------i~~l~~~~~~~~~ 333 (471)
.++..+++.|++|.+|.+|.++|++++. .+. .+...........
T Consensus 198 --~~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 275 (431)
T PRK08248 198 --EHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGA 275 (431)
T ss_pred --HcCCCEEEEcCccccCCCCCceEEEEEeCCccccccccccccccCCccccccchhhhhhchhhHHHHHHHHHHHhcCC
Confidence 2456699999999999899999987763 211 0111122233344
Q ss_pred CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCe
Q 012095 334 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 382 (471)
Q Consensus 334 ~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~ 382 (471)
+.+++....+..-| +-+....++..++...+.+.|++.|+++
T Consensus 276 ~l~p~~a~l~~rgl-------~tl~~R~~~~~~nA~~la~~L~~~p~v~ 317 (431)
T PRK08248 276 ALSPFNSFLLLQGL-------ETLHLRMERHSENALAVAKFLEEHEAVE 317 (431)
T ss_pred CCCHHHHHHHhcCc-------CcHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 45555433322222 3355566677778888899999887754
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-20 Score=190.86 Aligned_cols=352 Identities=13% Similarity=0.115 Sum_probs=221.1
Q ss_pred hcCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+.+||+..|.. .++. +|.+.+++.+++.+..+ +.......+....+++.+.+..+.. ..+.++++++++++.
T Consensus 37 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~-~~~~~~~~~~~~~la~~l~~~~p~~-~~~~v~f~~SGseA~ 114 (425)
T PRK07495 37 KEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTH-TCHQVVPYENYVRLAERLNALVPGD-FAKKTIFVTTGAEAV 114 (425)
T ss_pred CCCCEEEEccccHHhhccCCCCHHHHHHHHHHHhhccC-cccCccCCHHHHHHHHHHHHhCCCC-CCCEEEECCchHHHH
Confidence 36888999988863 3444 78899999999876321 1111222345555666666544311 126899999999999
Q ss_pred HHHHHHhcC-C-CCeEEEcCCCCCChHHHHHHc-CC-------------EEEEecCCCCCCCcCC----HHHHHhhhc--
Q 012095 169 LQAVLAVCS-P-GDEVIIPAPFWVSYPEMARIA-DA-------------TPVILPTRISENFLLD----PKVLESKLT-- 226 (471)
Q Consensus 169 ~~~~~~l~~-~-gd~Vlv~~p~y~~~~~~~~~~-G~-------------~~~~v~~~~~~~~~ld----~e~l~~~l~-- 226 (471)
..+++.... . ...|+....+|++....+... |. .++.+|.+.+. .+.+ ++.+++.+.
T Consensus 115 e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~l~~~~~~~ 193 (425)
T PRK07495 115 ENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVEL-HGVSVEQSLAALDKLFKAD 193 (425)
T ss_pred HHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCccc-ccccHHHHHHHHHHHHHhc
Confidence 988886431 2 357888888888765433221 11 12333332211 1122 445566653
Q ss_pred ---cCCcEEEEc-CCCCCcc-cCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCC
Q 012095 227 ---EKSRLLILC-SPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 301 (471)
Q Consensus 227 ---~~~~~i~i~-~p~NPtG-~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 301 (471)
++..+|++. ..+| +| .++|++.+++|.++|++| ++++|+||+|.++...|.. +... ..+.+..+.+||
T Consensus 194 ~~~~~iaavi~EPv~g~-~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~tG~gr~G~~----~a~~-~~gv~pDi~tls 266 (425)
T PRK07495 194 VDPQRVAAIIIEPVQGE-GGFYPAPAAFMKALRELCDQH-GILLIADEVQTGFARTGKL----FAME-HHEVAADLTTMA 266 (425)
T ss_pred cCCCceEEEEECCccCC-CCCccCCHHHHHHHHHHHHHc-CCEEEEechhhcCCcCCCc----eeec-ccCCCCCEEeeh
Confidence 235566553 3356 78 568999999999999999 9999999999986544421 1111 123445688999
Q ss_pred cccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC----
Q 012095 302 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE---- 377 (471)
Q Consensus 302 K~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~---- 377 (471)
|.++ +|+|+||+++++++++.+.......+++.++++++++.++|+.-.. . .+.+..+++.+++.+.|++
T Consensus 267 K~l~-~G~pigav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~-~----~l~~~~~~~g~~l~~~L~~l~~~ 340 (425)
T PRK07495 267 KGLA-GGFPLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEE-E----DLCERANQLGNRLKQRLASLRET 340 (425)
T ss_pred hhhc-CCccceEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHh-c----hHHHHHHHHHHHHHHHHHHHHhh
Confidence 9998 8999999999999998876544556778899999988887764110 1 1222333333333333322
Q ss_pred CCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHH
Q 012095 378 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAV 455 (471)
Q Consensus 378 ~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~ 455 (471)
.|.+.-+... |+++|+.+.+... ... .......+.+.++++ ||++.+.... .+.+||.... +++++++++
T Consensus 341 ~~~i~~vrG~-Gl~~~iel~~~~~--~~~--~~~~~~~~~~~~~~~-Gvl~~~~g~~--~~~~r~~Ppl~it~~~id~~~ 412 (425)
T PRK07495 341 VPEIADIRGP-GFMNAVEFNDADS--GLP--SAEFANRVRLKALEK-GLILLTCGVH--GNVIRFLAPITIQDDVFAEAL 412 (425)
T ss_pred CCCeeeeecC-ceEEEEEEecCCC--CCc--cHHHHHHHHHHHHHC-CeEEeecCCC--CCEEEEeCCCccCHHHHHHHH
Confidence 3333222222 7788988843200 000 000134567777765 9998764222 3679998765 999999999
Q ss_pred HHHHHHHHhhCC
Q 012095 456 ERIKKGLLTLRP 467 (471)
Q Consensus 456 ~~l~~~l~~~~~ 467 (471)
++|++++++++.
T Consensus 413 ~~l~~~l~~~~~ 424 (425)
T PRK07495 413 DILEASILEASA 424 (425)
T ss_pred HHHHHHHHHHhc
Confidence 999999988763
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-20 Score=191.16 Aligned_cols=224 Identities=14% Similarity=0.169 Sum_probs=163.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH----HHHHcC
Q 012095 125 FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIAD 200 (471)
Q Consensus 125 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~G 200 (471)
...|+.. |.+ .++++++++++..| .++.++++|+++++..++ .++++||+|++++|.|..+.. .+...|
T Consensus 124 ~~~Y~r~-gnp-t~~aLE~~lA~leg----~e~ai~~~SG~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G 196 (464)
T PLN02509 124 PYDYTRS-GNP-TRDALESLLAKLDK----ADRAFCFTSGMAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLSQVVPRSG 196 (464)
T ss_pred CCccCCC-CCH-HHHHHHHHHHHHhC----CCEEEEeCcHHHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHHHHHHHCC
Confidence 4568654 665 68888888887665 456777788888887655 578999999999999998863 345779
Q ss_pred CEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCC
Q 012095 201 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 280 (471)
Q Consensus 201 ~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~ 280 (471)
++++.++. .|++++++++++++|+|++++|+||||.+.+ +++|+++|++| +++||+|++|......
T Consensus 197 ~~v~~vd~-------~d~e~l~~ai~~~TklV~lesPsNPtG~i~D---l~~I~~lAk~~-g~~lIVD~A~a~~~~~--- 262 (464)
T PLN02509 197 VVVKRVNT-------TNLDEVAAAIGPQTKLVWLESPTNPRQQISD---IRKIAEMAHAQ-GALVLVDNSIMSPVLS--- 262 (464)
T ss_pred eEEEEeCC-------CCHHHHHHhCCcCCeEEEEECCCCCCCCHHH---HHHHHHHHHHc-CCEEEEECCccccccC---
Confidence 99988863 3789999999999999999999999999766 99999999999 9999999998643221
Q ss_pred ccccccCCCCCCceEEEecCCcccCccc-hhheeeEc-CHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHH
Q 012095 281 HTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 358 (471)
Q Consensus 281 ~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~R~G~v~~-~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~ 358 (471)
.++ . .+..+++.|++|.++-+| .=.|++++ ++.+.+.+...+.....+.+++...++...| +.+.
T Consensus 263 -~pl-~----~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A~l~lr~L-------~tL~ 329 (464)
T PLN02509 263 -RPL-E----LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGI-------KTMA 329 (464)
T ss_pred -Chh-h----cCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHHHHHHHhhh-------hhHH
Confidence 111 1 234599999999986323 23577776 4455565555444334345555533333333 4466
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCe
Q 012095 359 KMVKAFRERRDFLVKSFGELEGVK 382 (471)
Q Consensus 359 ~~~~~~~~~r~~l~~~L~~~~g~~ 382 (471)
...++..+++..+.+.|++.|.++
T Consensus 330 ~R~~r~~~nA~~la~~L~~~p~V~ 353 (464)
T PLN02509 330 LRIEKQQENARKIAMYLSSHPRVK 353 (464)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcc
Confidence 777888888899999999887763
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-20 Score=192.15 Aligned_cols=351 Identities=15% Similarity=0.128 Sum_probs=222.5
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+.+||+..|. ..++. ++.+.+++.+++.+. ..+....+..+.+..+++.+.+..+.. ..+.++++++++++.
T Consensus 53 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~-~~~~~~~~~~~~~~~la~~l~~~~p~~-~~~~v~f~~sGseA~ 130 (443)
T PRK06058 53 VDGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARF-THTCFMVTPYEGYVAVAEQLNRLTPGD-HEKRSALFNSGAEAV 130 (443)
T ss_pred CCCCEEEEcCcchhhhccCCCCHHHHHHHHHHHHhc-cCccccccCCHHHHHHHHHHHHhCCCC-CCCEEEEeCCcHHHH
Confidence 3688899998886 34444 789999999998763 333333344577778888887655421 125888899999999
Q ss_pred HHHHHHhc--CCCCeEEEcCCCCCChHHHHHHcCC--------------EEEEecCCCCCC----CcC--------CHHH
Q 012095 169 LQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADA--------------TPVILPTRISEN----FLL--------DPKV 220 (471)
Q Consensus 169 ~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~G~--------------~~~~v~~~~~~~----~~l--------d~e~ 220 (471)
..+++... ...+.|+..+++|+++...+..... .+..+|.....+ +.. ..+.
T Consensus 131 e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (443)
T PRK06058 131 ENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITV 210 (443)
T ss_pred HHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHH
Confidence 98888432 1237899999999988755433211 112222111000 001 1233
Q ss_pred HHhhhc-cCCcEEEEcCCCCCc-cc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEE
Q 012095 221 LESKLT-EKSRLLILCSPSNPT-GS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTV 297 (471)
Q Consensus 221 l~~~l~-~~~~~i~i~~p~NPt-G~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~ 297 (471)
+++.+. +++.+| |..|-+.. |. ..+++.+++|.++|++| |+++|.||++.++...|... ......-..| +
T Consensus 211 l~~~~~~~~iAav-i~EPi~g~gG~~~p~~~yl~~lr~lc~~~-gillI~DEV~tGfgRtG~~f-a~~~~gv~PD----i 283 (443)
T PRK06058 211 IEKQVGADNLAAV-IIEPIQGEGGFIVPAEGFLPALLEWCREN-GVVFIADEVQTGFARTGAWF-ACEHEGIVPD----L 283 (443)
T ss_pred HHHhhCCCceEEE-EECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcChhhh-HHHhcCCCCC----E
Confidence 344443 344444 45665444 44 45688999999999999 99999999999875444211 1111111112 3
Q ss_pred ecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC
Q 012095 298 NGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377 (471)
Q Consensus 298 ~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 377 (471)
-+++|.+| +|+++|++++++++++.+.......+++.+++++.++.+.|+.- ++ +++.++.+++.+++.+.|++
T Consensus 284 v~~gK~l~-~G~Pi~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~---~~--~~l~~~~~~~g~~l~~~L~~ 357 (443)
T PRK06058 284 ITTAKGIA-GGLPLSAVTGRAEIMDAPHPGGLGGTYGGNPVACAAALAAIETI---EE--DDLVARARQIEALMTDRLRA 357 (443)
T ss_pred EEEccccc-CCCccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHH---HH--cCHHHHHHHHHHHHHHHHHH
Confidence 34689998 99999999999999988765555567889999999999998741 11 23455555666666666655
Q ss_pred C----CCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHH
Q 012095 378 L----EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTL 451 (471)
Q Consensus 378 ~----~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~i 451 (471)
+ +.+.-+...|.|+.+.-.++... .. .......+.+.++++ ||++.++..|+ +++|+... .+++++
T Consensus 358 l~~~~~~i~~vrg~G~~~~i~~~~~~~~--~~---~~~~~~~l~~~~~~~-Gv~~~~~~~~~--~~lr~~Ppl~~t~~~i 429 (443)
T PRK06058 358 LAAEDDRIGDVRGRGAMIAIELVKPGTT--EP---DAELTKALAAAAHAA-GVIVLTCGTYG--NVIRLLPPLVIGDELL 429 (443)
T ss_pred HHhhCCcEEeeeccceEEEEEEecCCCC--CC---cHHHHHHHHHHHHHC-CeEEeccCCCC--CEEEEECCCccCHHHH
Confidence 3 22222456676654432221100 00 000134566666665 99999876553 68999644 599999
Q ss_pred HHHHHHHHHHHHhh
Q 012095 452 QAAVERIKKGLLTL 465 (471)
Q Consensus 452 ~~~~~~l~~~l~~~ 465 (471)
++++++|+++++++
T Consensus 430 ~~~~~~l~~~l~~~ 443 (443)
T PRK06058 430 REGLDVLEAALADL 443 (443)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998753
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-20 Score=188.84 Aligned_cols=211 Identities=17% Similarity=0.143 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH---HHHHcCCEEEEecCCCCC
Q 012095 136 ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE---MARIADATPVILPTRISE 212 (471)
Q Consensus 136 ~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~---~~~~~G~~~~~v~~~~~~ 212 (471)
+|++.++++. | .+..++++++++++..++.++++|||+|+++++.|+.+.. .++..|++++.++.
T Consensus 51 ~lE~~la~le----g----~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~---- 118 (397)
T PRK05939 51 ALEAKITKME----G----GVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVDA---- 118 (397)
T ss_pred HHHHHHHHHh----C----CCeEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHhcCCEEEEECC----
Confidence 6777777764 3 2334555556899999999999999999999999987543 45678999999875
Q ss_pred CCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCC
Q 012095 213 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292 (471)
Q Consensus 213 ~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 292 (471)
.|++++++++++++++|++++|+||||.+.+ +++|+++|+++ ++++|+|++|.... .+ . +...+
T Consensus 119 ---~d~e~l~~~l~~~tklV~vesp~NptG~v~d---l~~I~~la~~~-gi~livD~t~a~~~-------~~-~-~~~~g 182 (397)
T PRK05939 119 ---TDVQNVAAAIRPNTRMVFVETIANPGTQVAD---LAGIGALCRER-GLLYVVDNTMTSPW-------LF-R-PKDVG 182 (397)
T ss_pred ---CCHHHHHHhCCCCCeEEEEECCCCCCCCHHh---HHHHHHHHHHc-CCEEEEECCccccc-------cc-C-ccccC
Confidence 2899999999999999999999999999976 99999999999 99999999986311 11 1 11135
Q ss_pred ceEEEecCCcccCccchhheeeEcCHHH----------------------HHHHHH-HHhcccCCCChHHHHHHHHHHhc
Q 012095 293 RTLTVNGFSKAFAMTGWRLGYIAGPKHF----------------------VAACNK-IQSQFTSGASSISQKAGVAALGL 349 (471)
Q Consensus 293 ~~i~~~S~SK~~g~~G~R~G~v~~~~~~----------------------i~~l~~-~~~~~~~~~~~~~q~aa~~~L~~ 349 (471)
..+++.|+||.++..|.++|+++.+... +..+.. .........++.....+..-+
T Consensus 183 aDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl-- 260 (397)
T PRK05939 183 ASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGATLSSEAAHRIAIGA-- 260 (397)
T ss_pred CEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCc--
Confidence 6799999999998889999998764211 111111 122334445555433322222
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 012095 350 GYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 381 (471)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~ 381 (471)
+-+....++..++...+.+.|++.|.+
T Consensus 261 -----~tl~~R~~~~~~na~~la~~L~~~p~V 287 (397)
T PRK05939 261 -----ETLALRVDRSCSNALALAQFLEAHPKV 287 (397)
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 234455555566777888888877654
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=191.33 Aligned_cols=216 Identities=14% Similarity=0.162 Sum_probs=154.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHH----cCCEEEEec
Q 012095 132 AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI----ADATPVILP 207 (471)
Q Consensus 132 ~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~----~G~~~~~v~ 207 (471)
+...+|++.++++. | .+..++++++++++..++.+++++||+|+++.+.|......+.. .|+++..++
T Consensus 58 pt~~~Le~~lA~l~----g----~~~~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d 129 (425)
T PRK06084 58 PTNDVLEQRVAALE----G----GVGALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAA 129 (425)
T ss_pred chHHHHHHHHHHHh----C----CCceeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEEC
Confidence 44567777777774 3 24566778888999999999999999999999999865554432 466666665
Q ss_pred CCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccC
Q 012095 208 TRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL 287 (471)
Q Consensus 208 ~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~ 287 (471)
. .|++++++++++++++|++++|+||||.+++ +++|.++|+++ +++||+|++|..... ..++ .
T Consensus 130 ~-------~d~e~le~ai~~~tklV~lesp~NPtG~v~d---l~~I~~la~~~-~i~vVvD~a~a~~~~----~~p~-~- 192 (425)
T PRK06084 130 H-------DDIAALEALIDERTKAVFCESIGNPAGNIID---IQALADAAHRH-GVPLIVDNTVATPVL----CRPF-E- 192 (425)
T ss_pred C-------CCHHHHHHHhccCCcEEEEeCCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCccccc----CChh-h-
Confidence 3 3899999999989999999999999999999 89999999999 999999999974221 1111 1
Q ss_pred CCCCCceEEEecCCcccCccchhheeeEcC-HHH--HH----------------------------HH----HHHHhccc
Q 012095 288 PGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHF--VA----------------------------AC----NKIQSQFT 332 (471)
Q Consensus 288 ~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~-~~~--i~----------------------------~l----~~~~~~~~ 332 (471)
.+..+++.|++|.++.+|.++|.+++. ..+ .+ .+ ......++
T Consensus 193 ---~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g 269 (425)
T PRK06084 193 ---HGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNMG 269 (425)
T ss_pred ---cCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHHHHHhcC
Confidence 234599999999998889999887653 211 00 00 11122345
Q ss_pred CCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCe
Q 012095 333 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 382 (471)
Q Consensus 333 ~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~ 382 (471)
...+++....+..-| +-+....++..++...+.+.|++.|++.
T Consensus 270 ~~l~~~~a~l~lrgl-------~tl~~R~~~~~~na~~la~~L~~~p~v~ 312 (425)
T PRK06084 270 AALSPFNAFLILQGL-------ETLALRMERHTENALKVARYLQQHPQVA 312 (425)
T ss_pred CCCCHHHHHHHHcCc-------CcHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 556666544333333 3356666677778888888888887653
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-20 Score=187.29 Aligned_cols=223 Identities=12% Similarity=0.137 Sum_probs=162.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH----HHHHcCC
Q 012095 126 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADA 201 (471)
Q Consensus 126 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~G~ 201 (471)
..|+ .+....++.+++.+....+ .++.+ +++++++|+..++.++++|||+|++++|.|.++.. .++..|+
T Consensus 56 y~Ys--R~gnPt~~~Le~~la~le~---~~~~v-~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi 129 (395)
T PRK05967 56 YTYG--TRGTPTTDALCKAIDALEG---SAGTI-LVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGV 129 (395)
T ss_pred CccC--CCCChHHHHHHHHHHHHhC---CCCEE-EECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCe
Confidence 3453 3445566666666655444 33454 55557899999999999999999999999999874 4577899
Q ss_pred EEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCc
Q 012095 202 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 281 (471)
Q Consensus 202 ~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~ 281 (471)
++..++.. +.+.+++++++++|+|++++|+||+|.+.+ +++|+++|+++ ++++|+|++|....+-
T Consensus 130 ~v~~vd~~-------~~e~l~~al~~~TklV~lesPsNP~l~v~d---l~~I~~la~~~-g~~vvVD~t~a~p~~~---- 194 (395)
T PRK05967 130 EVEYYDPE-------IGAGIAKLMRPNTKVVHTEAPGSNTFEMQD---IPAIAEAAHRH-GAIVMMDNTWATPLYF---- 194 (395)
T ss_pred EEEEeCCC-------CHHHHHHhcCcCceEEEEECCCCCCCcHHH---HHHHHHHHHHh-CCEEEEECCccCceec----
Confidence 99888532 457899999999999999999999876655 99999999999 9999999999752211
Q ss_pred cccccCCCCCCceEEEecCCcccC-ccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHH
Q 012095 282 TSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 360 (471)
Q Consensus 282 ~~~~~~~~~~~~~i~~~S~SK~~g-~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~ 360 (471)
... ..+-.|++.|.+|.++ -.+...|++++++++.+++.........+.+++....+..- -+-+.-.
T Consensus 195 -~pl----~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~~~~G~~~~p~da~l~~rg-------l~Tl~lR 262 (395)
T PRK05967 195 -RPL----DFGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAHGTLGLCAGPDDTYQILRG-------LRTMGIR 262 (395)
T ss_pred -Chh----HcCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHHHHHcCCCCCHHHHHHHHcC-------cccHHHH
Confidence 111 1345599999999974 34466798888888877777666656666777664333322 2335555
Q ss_pred HHHHHHHHHHHHHHhcCCCCC
Q 012095 361 VKAFRERRDFLVKSFGELEGV 381 (471)
Q Consensus 361 ~~~~~~~r~~l~~~L~~~~g~ 381 (471)
.++..++...+.+.|++.|.+
T Consensus 263 ~~~~~~na~~lA~~L~~hp~v 283 (395)
T PRK05967 263 LEHHRKSALEIARWLEGRPDV 283 (395)
T ss_pred HHHHHHHHHHHHHHHHhCCCC
Confidence 666677777788888887665
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-20 Score=190.24 Aligned_cols=352 Identities=14% Similarity=0.103 Sum_probs=218.3
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+++||+..|. ..++. ++.+.+++.+++.+..... ...-..+....+++.+.+..+. ..+.++++++++++.
T Consensus 40 ~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~~-~~~~~~~~~~~la~~L~~~~~~--~~~~v~f~~SGseA~ 116 (433)
T PRK08117 40 VDGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGP-SGVIYYESILKLAEELAEITPG--GLDCFFFSNSGAEAI 116 (433)
T ss_pred CCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcc-ccccCCHHHHHHHHHHHHhCCC--CCCEEEEeCcHHHHH
Confidence 3688899999885 34444 7889999999887522111 1111235566666666655421 346899999999999
Q ss_pred HHHHHHhcC-CC-CeEEEcCCCCCChHHHHH-HcCC-------------EEEEecCCCCC--CCc--------CCHHHHH
Q 012095 169 LQAVLAVCS-PG-DEVIIPAPFWVSYPEMAR-IADA-------------TPVILPTRISE--NFL--------LDPKVLE 222 (471)
Q Consensus 169 ~~~~~~l~~-~g-d~Vlv~~p~y~~~~~~~~-~~G~-------------~~~~v~~~~~~--~~~--------ld~e~l~ 222 (471)
..+++.... .| ..|+..+.+|++....+. ..+. .+..+|..... .+. -+++.++
T Consensus 117 e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 196 (433)
T PRK08117 117 EGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLE 196 (433)
T ss_pred HHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHH
Confidence 988886321 23 568887888877554332 1111 11223322100 000 1456666
Q ss_pred hhhc-----cCCcEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEE
Q 012095 223 SKLT-----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLT 296 (471)
Q Consensus 223 ~~l~-----~~~~~i~i~~p~NPtG~~-~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~ 296 (471)
+.+. ++..+|++.......|.. .+++++++|.++|++| |+++|+||+|.++...|.... .... +....
T Consensus 197 ~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEv~tG~gr~G~~~~-~~~~----gv~pD 270 (433)
T PRK08117 197 SLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRH-GILLIFDEVQTGFGRTGEWFA-AQTF----GVVPD 270 (433)
T ss_pred HHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHc-CCEEEEecchhccCccccchh-Hhhc----CCCCC
Confidence 6653 234455554445556764 5889999999999999 999999999998654443211 1111 21223
Q ss_pred EecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhc
Q 012095 297 VNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 376 (471)
Q Consensus 297 ~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~ 376 (471)
+.||||.+| +|+++|++++++++++.+.......+++.+++++.++.++|+.. + .+.+.+.++++.+++.+.|.
T Consensus 271 i~t~sK~lg-~G~pigav~~~~~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l---~--~~~l~~~~~~~g~~l~~~L~ 344 (433)
T PRK08117 271 IMTIAKGIA-SGLPLSAVVASKELMEQWPLGSHGTTFGGNPVACAAALATLEVI---K--EEKLLDNANEMGAYALERLE 344 (433)
T ss_pred Eeehhhhcc-CCCcceeEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHH---H--hccHHHHHHHHHHHHHHHHH
Confidence 579999999 99999999999999988765444556778999999999998742 1 11233334444444444444
Q ss_pred CCC---CCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe--ecCHHHH
Q 012095 377 ELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY--AASLTTL 451 (471)
Q Consensus 377 ~~~---g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~--~~~~e~i 451 (471)
++. ++....+..|.++++.+.+..+ .........+.+.++++ ||.+.+... ..+++|+++ ..++++|
T Consensus 345 ~l~~~~~~~~~vrg~Gl~~gi~~~~~~~-----~~~~~~~~~~~~~l~~~-Gv~~~~~g~--~~~~lRl~p~~~~t~~~i 416 (433)
T PRK08117 345 VLKEKHPVIGDVRGIGLMIGIEIVDPDG-----EPDGDAVEKILDKCLEK-GLLFYLCGN--AGNVLRMIPPLTVTKEEI 416 (433)
T ss_pred HHHhcCCceeeeecCCcEEEEEEecCCC-----CcchHHHHHHHHHHHHC-CCEEeecCC--CCCEEEEeCCccCCHHHH
Confidence 320 2222223445556666642100 00001245667777765 998876321 246899995 4599999
Q ss_pred HHHHHHHHHHHHhhC
Q 012095 452 QAAVERIKKGLLTLR 466 (471)
Q Consensus 452 ~~~~~~l~~~l~~~~ 466 (471)
++++++|.++++++.
T Consensus 417 ~~~~~~l~~~l~~~~ 431 (433)
T PRK08117 417 DEGLDILDEALTEYE 431 (433)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998764
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-20 Score=181.25 Aligned_cols=342 Identities=18% Similarity=0.227 Sum_probs=235.4
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
.+|+.+|||..|. +.++. +|.+++++.++.++-++ .+..-..+.+.++++.+.+..+ ..+.++++|+++||+
T Consensus 39 ~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h--~sn~~~~~~~~~la~~L~~~s~---~~d~vff~NSGaEA~ 113 (404)
T COG4992 39 QQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWH--VSNLFYNEPQAELAEKLVELSP---FADRVFFCNSGAEAN 113 (404)
T ss_pred CCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhh--cccccCChHHHHHHHHHHhhCc---cccEEEEcCCcHHHH
Confidence 4789999998887 56665 79999999998765221 1111224566667777765433 368999999999999
Q ss_pred HHHHHHhc---C-CC-CeEEEcCCCCCChHHHHHHcCCEEEEe----cCCCC---CCCcCCHHHHHhhhccCCcEEEEcC
Q 012095 169 LQAVLAVC---S-PG-DEVIIPAPFWVSYPEMARIADATPVIL----PTRIS---ENFLLDPKVLESKLTEKSRLLILCS 236 (471)
Q Consensus 169 ~~~~~~l~---~-~g-d~Vlv~~p~y~~~~~~~~~~G~~~~~v----~~~~~---~~~~ld~e~l~~~l~~~~~~i~i~~ 236 (471)
+.+++... . |+ .+|+....+|++-...+-..+.+..+. |+.+. -.|+ |++++++++++++.+|++..
T Consensus 114 EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfn-Di~al~~ai~~~taAvivEP 192 (404)
T COG4992 114 EAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFN-DIEALEAAIDEDTAAVIVEP 192 (404)
T ss_pred HHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCC-CHHHHHHHhccCeEEEEEec
Confidence 99888752 2 22 478888888876443333333322111 22111 0122 99999999999999998877
Q ss_pred CCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeE
Q 012095 237 PSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 315 (471)
Q Consensus 237 p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~ 315 (471)
-+--.|+ ..+++.++++.++|++| |+++|.||++.++-..|.- ..+.... -.--+-++.|.+| .|+.+|.++
T Consensus 193 IQGEgGV~~~~~~fl~~lr~lCd~~-g~LLI~DEVQtG~GRTGk~-fA~e~~g----V~PDI~tlaK~Lg-GG~PigA~l 265 (404)
T COG4992 193 IQGEGGVIPAPPEFLKALRELCDEH-GALLILDEVQTGLGRTGKL-FAYEHYG----VEPDILTLAKALG-GGFPIGAML 265 (404)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHh-CeEEEEeccccCCCccchH-HHHHHhC----CCCCEEEeecccc-CCccceeeE
Confidence 7877885 55777899999999999 9999999999987544421 1111111 1112555789999 999999999
Q ss_pred cCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCC----CCCeeeCCCcceE
Q 012095 316 GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EGVKMSEPQGAFY 391 (471)
Q Consensus 316 ~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~----~g~~~~~p~~g~~ 391 (471)
+.+.+.+.+..-....+++.|+++.+++.++|+.-. -+.+.+..+++-+++.+.|.++ +-++-+. .-|+.
T Consensus 266 a~~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~-----~e~ll~~v~~~g~~~~~~L~~l~~~~~~v~~vR-G~GLm 339 (404)
T COG4992 266 ATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLL-----EEGLLENVREKGEYLLQRLRELKRRYPLVKEVR-GRGLM 339 (404)
T ss_pred EchhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHc-----chhHHHHHHHHHHHHHHHHHHHhhcCCceeeee-cceeE
Confidence 996667766655566788999999999999987521 2334444555555566666553 2122122 33666
Q ss_pred EeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhCCC
Q 012095 392 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRPG 468 (471)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~~~~ 468 (471)
+-+.+.... ...++++.|.++ ||++.+.. ++.+|+.... +++++++++++|++++......
T Consensus 340 iGiel~~~~-----------~a~~~~~~~~~~-gvL~~~a~----~~ViR~~PpL~i~~eei~~~~~~l~~~l~~~~~~ 402 (404)
T COG4992 340 IGIELKEPY-----------RARDIVRALREE-GVLVLPAG----PNVIRFLPPLVITEEEIDEALDALERALAAASAR 402 (404)
T ss_pred EEEEecCcc-----------cHHHHHHHHHHC-CeEEecCC----CCeEEecCCccCCHHHHHHHHHHHHHHHHHhhhc
Confidence 667765421 367889988876 89988854 5689999886 9999999999999999876543
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-20 Score=188.17 Aligned_cols=217 Identities=14% Similarity=0.192 Sum_probs=163.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH----HHHcCCEEEEecC
Q 012095 133 GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPT 208 (471)
Q Consensus 133 G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~G~~~~~v~~ 208 (471)
-..+|.+.++++. | .+..+.++++++|+.+++.+++++||+|+++.++|.+.... +...|+++.++..
T Consensus 62 tv~~lE~~la~le----g----~~~av~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~ 133 (432)
T PRK06702 62 TLAAFEQKLAELE----G----GVGAVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNP 133 (432)
T ss_pred HHHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECC
Confidence 3566777777764 3 34678899999999999999999999999999999876665 6778999998864
Q ss_pred CCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCC
Q 012095 209 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 288 (471)
Q Consensus 209 ~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 288 (471)
.+|++.++++++++||+|++.+|+||++.+.+ +++|+++|++| ++++|+|++|.. +.+.. +
T Consensus 134 ------~~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~D---i~~I~~iA~~~-gi~livD~T~~t--------P~~~~-p 194 (432)
T PRK06702 134 ------NLTADEIVALANDKTKLVYAESLGNPAMNVLN---FKEFSDAAKEL-EVPFIVDNTLAT--------PYLCQ-A 194 (432)
T ss_pred ------CCCHHHHHHhCCcCCeEEEEEcCCCccccccC---HHHHHHHHHHc-CCEEEEECCCCc--------hhhCC-h
Confidence 26999999999999999999999999999999 99999999999 999999999852 11111 1
Q ss_pred CCCCceEEEecCCc-----ccCccchhh-----eeeEcC-HHHH---------------------H-HHHHHHhcccCCC
Q 012095 289 GMWERTLTVNGFSK-----AFAMTGWRL-----GYIAGP-KHFV---------------------A-ACNKIQSQFTSGA 335 (471)
Q Consensus 289 ~~~~~~i~~~S~SK-----~~g~~G~R~-----G~v~~~-~~~i---------------------~-~l~~~~~~~~~~~ 335 (471)
-..+-.|++.|+|| ..+++|.++ +|..++ .+++ . ........++.++
T Consensus 195 l~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 274 (432)
T PRK06702 195 FEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCM 274 (432)
T ss_pred hhcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHHHHccCCC
Confidence 11344599999999 777888887 665543 1111 1 1112333456678
Q ss_pred ChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCee
Q 012095 336 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 383 (471)
Q Consensus 336 ~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~ 383 (471)
+++....+...|+. +..+.++..++...+.+.|++.|++.+
T Consensus 275 sp~~a~l~~rgL~T-------l~lR~~r~~~Na~~la~~L~~~p~V~~ 315 (432)
T PRK06702 275 SPFNAYISNIGLET-------LHLRMERHSENALAVAKWLADHERIEW 315 (432)
T ss_pred CHHHHHHHHhccCc-------HHHHHHHHHHHHHHHHHHHHhCCCcce
Confidence 88887766666653 445555556888888888888776543
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-20 Score=186.96 Aligned_cols=216 Identities=12% Similarity=0.147 Sum_probs=155.7
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH----HHHHcCCEEEEe
Q 012095 131 NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVIL 206 (471)
Q Consensus 131 ~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~G~~~~~v 206 (471)
++...+|++.++++. | ....+++++| +.++..++ .+++|||+|++++|.|.+... .+...|++++.+
T Consensus 49 ~p~~~~Le~~lA~l~----g---~~~~~~~~sG-~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v 119 (377)
T PRK07671 49 NPTRAALEELIAVLE----G---GHAGFAFGSG-MAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFV 119 (377)
T ss_pred ChHHHHHHHHHHHHh----C---CCceEEeCCH-HHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEE
Confidence 334567777777765 4 2345665555 56777654 578999999999999984432 334579999888
Q ss_pred cCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCcccccc
Q 012095 207 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS 286 (471)
Q Consensus 207 ~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~ 286 (471)
+. .|++++++++++++++|++++|+||||.+.+ +++|.++|+++ ++++|+|++|....+.. ++ .
T Consensus 120 ~~-------~d~~~l~~ai~~~tklV~le~P~NPtg~~~d---l~~I~~la~~~-g~~lvvD~a~~~~~~~~----p~-~ 183 (377)
T PRK07671 120 DT-------SNLEEVEEAIRPNTKAIYVETPTNPLLKITD---IKKISTIAKEK-GLLTIVDNTFMTPYWQS----PI-S 183 (377)
T ss_pred CC-------CCHHHHHHhcCCCCeEEEEECCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCCCccccCC----hh-h
Confidence 64 3899999999999999999999999999988 88999999999 99999999997532211 11 1
Q ss_pred CCCCCCceEEEecCCcccCccc-hhheeeEc-CHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHH
Q 012095 287 LPGMWERTLTVNGFSKAFAMTG-WRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364 (471)
Q Consensus 287 ~~~~~~~~i~~~S~SK~~g~~G-~R~G~v~~-~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~ 364 (471)
.+..+++.|+||.++-++ .-.|++++ ++++++++...+.......+++....+... .+.+...+++.
T Consensus 184 ----~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~-------l~tl~~R~~~~ 252 (377)
T PRK07671 184 ----LGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRG-------LKTLGIRMEEH 252 (377)
T ss_pred ----hCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcC-------cChHHHHHHHH
Confidence 234599999999996332 23466665 667888888877766555666554433322 23355567777
Q ss_pred HHHHHHHHHHhcCCCCCe
Q 012095 365 RERRDFLVKSFGELEGVK 382 (471)
Q Consensus 365 ~~~r~~l~~~L~~~~g~~ 382 (471)
.++...+.+.|++.|++.
T Consensus 253 ~~na~~la~~L~~~~~v~ 270 (377)
T PRK07671 253 ETNSRAIAEFLNNHPAVN 270 (377)
T ss_pred HHHHHHHHHHHHcCCCee
Confidence 788888999998877653
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-20 Score=187.58 Aligned_cols=346 Identities=12% Similarity=0.082 Sum_probs=217.5
Q ss_pred hcCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCC-CCCcEEE-eCChHH
Q 012095 92 QAGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSY-TPDQILV-SNGAKQ 166 (471)
Q Consensus 92 ~~g~~~i~l~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~-~~~~i~i-t~G~~~ 166 (471)
..|+.+||+..|.. .++. ++.+.+++.+++.+....+ ......+.+..+++.+.+....+- ..+.+++ ++++++
T Consensus 32 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~-~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGse 110 (412)
T TIGR02407 32 EDGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGIIH-SLDMATEAKREFLETFNEIILKPRGLDYKVQFPGPTGTN 110 (412)
T ss_pred CCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhcccee-ccccCcHHHHHHHHHHHHhccCccCCCceEEEeCCCchH
Confidence 36888999988863 3444 7899999999887522111 111234566667777654321110 1124655 589999
Q ss_pred HHHHHHHHhcC-CC-CeEEEcCCCCCChHHHHHHc-CC------------EEEEecCCCCCCC-cCCHHHHHhhhc----
Q 012095 167 SILQAVLAVCS-PG-DEVIIPAPFWVSYPEMARIA-DA------------TPVILPTRISENF-LLDPKVLESKLT---- 226 (471)
Q Consensus 167 al~~~~~~l~~-~g-d~Vlv~~p~y~~~~~~~~~~-G~------------~~~~v~~~~~~~~-~ld~e~l~~~l~---- 226 (471)
+...+++.... +| ..|+....+|++....+... |. .++.+|....... .-+++.+++.+.
T Consensus 111 A~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~ 190 (412)
T TIGR02407 111 AVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSS 190 (412)
T ss_pred HHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccC
Confidence 99988886532 33 67888888898876543322 21 2233332110000 014677887775
Q ss_pred --cCCcEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCc-cccccCCCCCCceEEEecCCc
Q 012095 227 --EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWERTLTVNGFSK 302 (471)
Q Consensus 227 --~~~~~i~i~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~~~~~~~i~~~S~SK 302 (471)
+++.+|++...++++|. +.+++.+++|.++|++| ++++|+||++..+-..|... .....+.+ | +.+|||
T Consensus 191 ~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEV~tG~GRtG~~~a~~~~~v~P--D----i~~~~K 263 (412)
T TIGR02407 191 GVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRH-DILLIVDDIQAGCGRTGTFFSFEPAGIEP--D----IVCLSK 263 (412)
T ss_pred CCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCccchhHHhcccCCCC--C----EEEech
Confidence 23456666555888897 68999999999999999 99999999998653222211 11122222 2 446899
Q ss_pred ccCcc-chhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhc-cCC--ChHHHHHHHHHHHHHHHHHHHHhcCC
Q 012095 303 AFAMT-GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL-GYA--GGEVVSKMVKAFRERRDFLVKSFGEL 378 (471)
Q Consensus 303 ~~g~~-G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~-~~~--~~~~~~~~~~~~~~~r~~l~~~L~~~ 378 (471)
.++ + |+|+||+++++++ +.+.......+++.++++..++.+.|+. -.. ..+.+.++.+.++++.+.+.+. +
T Consensus 264 ~lg-~~G~pigav~~~~~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~~l~~~l~~l~~~---~ 338 (412)
T TIGR02407 264 SIS-GYGLPLALTLIKPEL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERLDRIVAE---Y 338 (412)
T ss_pred hcc-CCccceeEEEEchhh-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhh---C
Confidence 998 7 9999999998886 5443333445667788877776776662 111 1223334444444444433333 3
Q ss_pred CCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHH
Q 012095 379 EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVE 456 (471)
Q Consensus 379 ~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~ 456 (471)
+++.+.....|+++|+.+++. .....+...++++ ||.+.+...+ .+.+|++... ++++++++++
T Consensus 339 ~~~~~~vrg~Gl~~~l~l~~~-----------~~~~~~~~~~~~~-Gv~v~~~~~~--~~~lr~~p~l~~t~~~i~~~~~ 404 (412)
T TIGR02407 339 PELIKQVRGRGLMQGIECGDG-----------DLAGKIAKAAFEN-GLIIETSGPN--DEVIKLLPPLTIDEETLQQGLD 404 (412)
T ss_pred CCceEeeecceeEEEEEecCh-----------HHHHHHHHHHHHC-CCEEeccCCC--CCEEEEECCCCCCHHHHHHHHH
Confidence 333344456688899999753 1356788888765 9999875322 3679998875 9999999999
Q ss_pred HHHHHHHh
Q 012095 457 RIKKGLLT 464 (471)
Q Consensus 457 ~l~~~l~~ 464 (471)
+|.+++++
T Consensus 405 ~l~~~l~~ 412 (412)
T TIGR02407 405 ILEQAVEE 412 (412)
T ss_pred HHHHHHhC
Confidence 99998864
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-20 Score=187.35 Aligned_cols=325 Identities=15% Similarity=0.107 Sum_probs=214.6
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcC---C--CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREG---F--TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~---~--~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
+.++.|..|.-. +.|+.+.+++.+.+... . ..|....+...+.+.+.+ + +..| .++++|++|+|+++++.
T Consensus 26 ~~~iyld~~a~g-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~l~g--~~~~~v~~~~~~t~~l~ 100 (406)
T TIGR01814 26 NAVIYLDGNSLG-LMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLK-L-RLVG--AKEDEVVVMNTLTINLH 100 (406)
T ss_pred CCcEEecCCCcC-cCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhcc-c-cccC--CCCCcEEEeCCchHHHH
Confidence 457999977755 34788888887665431 1 111101122233333333 2 4456 47889999999999999
Q ss_pred HHHHHhcCCC---CeEEEcCCCCCChHH----HHHHcCCEE----EEecCCCCCCCcCCHHHHHhhh---ccCCcEEEEc
Q 012095 170 QAVLAVCSPG---DEVIIPAPFWVSYPE----MARIADATP----VILPTRISENFLLDPKVLESKL---TEKSRLLILC 235 (471)
Q Consensus 170 ~~~~~l~~~g---d~Vlv~~p~y~~~~~----~~~~~G~~~----~~v~~~~~~~~~ld~e~l~~~l---~~~~~~i~i~ 235 (471)
.++..++++| +.|++.+..|++... .++..|+++ +.++.+ .++.+|++.+++.+ ++++++|+++
T Consensus 101 ~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~--~~g~~~~~~l~~~~~~~~~~t~lv~~~ 178 (406)
T TIGR01814 101 LLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPR--EEETLRLEDILDTIEKNGDDIAVILLS 178 (406)
T ss_pred HHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccC--CCCccCHHHHHHHHHhcCCCeEEEEEe
Confidence 9999887665 368888899988433 345678887 455543 34557999998877 3688999999
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccC-ccchhheee
Q 012095 236 SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYI 314 (471)
Q Consensus 236 ~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~R~G~v 314 (471)
+++|.||..++ +++|.++|+++ |+++++|++++. |.....+. ..+..+++.|..|.++ -+| |.+
T Consensus 179 ~v~~~tG~~~~---~~~i~~~~~~~-g~~~~vD~aq~~----G~~~id~~----~~gvD~~~~s~hK~l~g~pG---~~l 243 (406)
T TIGR01814 179 GVQYYTGQLFD---MAAITRAAHAK-GALVGFDLAHAV----GNVPLDLH----DWGVDFACWCTYKYLNAGPG---AGA 243 (406)
T ss_pred ccccccceecC---HHHHHHHHHHc-CCEEEEEccccc----CCcccccc----cCCCCEEEEcCccccCCCCC---eEE
Confidence 99999999999 99999999999 999999999986 22222221 1345689999999873 244 444
Q ss_pred EcCHHHHHHHHHH-Hh----------------------cccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHH
Q 012095 315 AGPKHFVAACNKI-QS----------------------QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 371 (471)
Q Consensus 315 ~~~~~~i~~l~~~-~~----------------------~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l 371 (471)
+..++....+... .. ....+++.....++.++|+.- .+..++...++.++..+++
T Consensus 244 ~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~--~~~g~~~i~~~~~~l~~~l 321 (406)
T TIGR01814 244 FVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIF--DQAGMEALRKKSLLLTDYL 321 (406)
T ss_pred EEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHH
Confidence 4333322222110 00 001235555666666666641 0223567778888888888
Q ss_pred HHHhcCC----CCCeeeCCC-----cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEE
Q 012095 372 VKSFGEL----EGVKMSEPQ-----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRI 442 (471)
Q Consensus 372 ~~~L~~~----~g~~~~~p~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRi 442 (471)
.+.|.++ +|+++..|. +++ +.+.++ . +..++.+.|.++ ||.+.. ..++.||+
T Consensus 322 ~~~l~~~~~~~~~~~i~~~~~~~~r~~~-v~~~~~-~------------~~~~~~~~L~~~-gi~v~~----~~~~~iRi 382 (406)
T TIGR01814 322 EELIKARCGGPPVLTIITPRDHAQRGCQ-LSLTHP-V------------PGKAVFQALIKR-GVIGDK----REPSVIRV 382 (406)
T ss_pred HHHHHhhcCCCCceEEeCCCChhhcCCe-EEEEec-C------------CHHHHHHHHHHC-CEEEec----cCCCeEEE
Confidence 8888764 357766542 234 455565 2 567888888765 998753 23468999
Q ss_pred Eee--c-CHHHHHHHHHHHHHHH
Q 012095 443 SYA--A-SLTTLQAAVERIKKGL 462 (471)
Q Consensus 443 s~~--~-~~e~i~~~~~~l~~~l 462 (471)
|++ . ++++++++++.|++++
T Consensus 383 S~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 383 APVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred echhccCCHHHHHHHHHHHHHHh
Confidence 984 3 8899999999998764
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-19 Score=180.46 Aligned_cols=322 Identities=16% Similarity=0.183 Sum_probs=207.8
Q ss_pred eEEcCCCCCCCCC-----hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHH
Q 012095 97 VIRLAAGEPDFDT-----PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 171 (471)
Q Consensus 97 ~i~l~~g~~~~~~-----p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~ 171 (471)
...|+.|.|+++. +..-.+++.+.+..+...+++ ...+|+++++++++ .+++++++|+++++..+
T Consensus 25 ~~~~~~~~~~ip~~~~~~~~~~~~a~~~~~~~~~~~~G~--~~~~fe~~lA~~~g--------~~~~v~~~sGt~al~~a 94 (438)
T PRK15407 25 PKPFVPGKSPIPPSGKVIDAKELQNLVDASLDFWLTTGR--FNDAFEKKLAEFLG--------VRYALLVNSGSSANLLA 94 (438)
T ss_pred cccccCCCCCCCcCccCCCHHHHHHHHHHHHhCcccCCh--hHHHHHHHHHHHhC--------CCeEEEECCHHHHHHHH
Confidence 3447899887654 233344455555544444433 35788999998863 34799999999999988
Q ss_pred HHHh---------cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcc
Q 012095 172 VLAV---------CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTG 242 (471)
Q Consensus 172 ~~~l---------~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG 242 (471)
+.++ ++|||+|+++.|+|..+...+...|++++.++++. ..|.+|++.+++++++++++|+++++ +|
T Consensus 95 L~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd~-~~~~id~~~le~~i~~~tkaVi~~~~---~G 170 (438)
T PRK15407 95 FSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVEL-PTYNIDASLLEAAVSPKTKAIMIAHT---LG 170 (438)
T ss_pred HHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCC-CcCCcCHHHHHHHcCcCCeEEEEeCC---CC
Confidence 8876 47899999999999999999999999999999875 45789999999999999999998764 56
Q ss_pred cCCCHHHHHHHHHHHHhCCCeEEEEccCCCccc-cCCCCccccccCCCCCCceEEEecCC--cccCccchhheeeEcCH-
Q 012095 243 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII-YAPATHTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAGPK- 318 (471)
Q Consensus 243 ~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~g~~G~R~G~v~~~~- 318 (471)
...+ +++|.++|++| +++||+|++|.... +.+.. ...+. .+.+.||. |.+. +|- -|+++.++
T Consensus 171 ~p~d---l~~I~~la~~~-gi~vIeDaa~a~G~~~~g~~---~G~~g-----d~~~fSf~~~k~~~-~ge-GG~l~t~d~ 236 (438)
T PRK15407 171 NPFD---LAAVKAFCDKH-NLWLIEDNCDALGSTYDGRM---TGTFG-----DIATLSFYPAHHIT-MGE-GGAVFTNDP 236 (438)
T ss_pred Chhh---HHHHHHHHHHC-CCEEEEECccchhhhcCCee---eeccC-----ceEEEeCCCCCCcc-ccC-ceEEEECCH
Confidence 5555 89999999999 99999999998643 33321 11221 25566774 6664 343 59988764
Q ss_pred HHHHHHHHHHhcc---------------------------------------cCCCChHHHHHHHHHHhccCCChHHHHH
Q 012095 319 HFVAACNKIQSQF---------------------------------------TSGASSISQKAGVAALGLGYAGGEVVSK 359 (471)
Q Consensus 319 ~~i~~l~~~~~~~---------------------------------------~~~~~~~~q~aa~~~L~~~~~~~~~~~~ 359 (471)
++.+.++.++... ++.++.+..+++..-| +.+++
T Consensus 237 ~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL-------~~l~~ 309 (438)
T PRK15407 237 LLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQL-------EKLPG 309 (438)
T ss_pred HHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccccccCccHHHHHHHHHHH-------HHHHH
Confidence 4555554433211 1112222222222222 33556
Q ss_pred HHHHHHHHHHHHHHHhcCCCC-Ceee-CCCc---ceEE-eEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC
Q 012095 360 MVKAFRERRDFLVKSFGELEG-VKMS-EPQG---AFYL-FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 433 (471)
Q Consensus 360 ~~~~~~~~r~~l~~~L~~~~g-~~~~-~p~~---g~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~ 433 (471)
..++-+++.+++.+.|.++++ +.+. .+.+ ++|. .+.+++..+ .+-.++.+.|.++ ||.+.+...
T Consensus 310 ~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~Rd~l~~~L~~~-GI~~~~~~~ 379 (438)
T PRK15407 310 FIEARKANFAYLKEGLASLEDFLILPEATPNSDPSWFGFPITVKEDAG---------FTRVELVKYLEEN-KIGTRLLFA 379 (438)
T ss_pred HHHHHHHHHHHHHHHhccCCCccccCcCCCCCeeEEEEEEEEECCcCC---------CCHHHHHHHHHHC-CCCccccCC
Confidence 666666777777888887765 3222 1222 2332 344432110 1467888888765 886653221
Q ss_pred --------CC------C---C-------CcEEEEeec--CHHHHHHHHHHHHHHHH
Q 012095 434 --------FG------D---D-------TCIRISYAA--SLTTLQAAVERIKKGLL 463 (471)
Q Consensus 434 --------f~------~---~-------~~iRis~~~--~~e~i~~~~~~l~~~l~ 463 (471)
|. . + ..+-+-+.. ++++++..++.|+++++
T Consensus 380 ~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~~~l~~~~v~~i~~~i~~~~~ 435 (438)
T PRK15407 380 GNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGVYPGLTEEMLDYVIEKIEEFFG 435 (438)
T ss_pred CccccChhhhhcCCCCCCCChHHHHHHhCeEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 00 0 0 123333332 78999999999998874
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-20 Score=169.46 Aligned_cols=333 Identities=17% Similarity=0.184 Sum_probs=230.8
Q ss_pred CCCeEEcCCCC-CCCCChHHHHHHHHHHHHcC---CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 94 GVSVIRLAAGE-PDFDTPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 94 g~~~i~l~~g~-~~~~~p~~v~~a~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.+++++|+.|+ ..+..+|+++++..+++++- ...-.-..|+....+.+...+.+.++ ..|.|+. +..-.+..
T Consensus 66 ~k~ilnFcaNnYLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~kiAqfh~---rED~ily-pscfdANa 141 (417)
T KOG1359|consen 66 DKKILNFCANNYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQFHG---REDTILY-PSCFDANA 141 (417)
T ss_pred ccceeeecccccccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHHHHHhC---CCceEEe-ccccccch
Confidence 35789999888 67777899999999998761 12121236888888888888888777 4445544 44455566
Q ss_pred HHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc----CCcEEEEcCCCCCcccCC
Q 012095 170 QAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE----KSRLLILCSPSNPTGSVY 245 (471)
Q Consensus 170 ~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~----~~~~i~i~~p~NPtG~~~ 245 (471)
.++.+++.|.|.|+-++-.+.+..+.++++. + + ..+|+-.++..+.+ +-|+|+......+.|.+.
T Consensus 142 g~feail~pedAvfSDeLNhASIIdGirLck-r---y-------~h~dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdia 210 (417)
T KOG1359|consen 142 GAFEAILTPEDAVFSDELNHASIIDGIRLCK-R---Y-------RHVDVFDLEHCLISACKMRLKLVVTDGVFSMDGDIA 210 (417)
T ss_pred HHHHHhcChhhhhhccccccchhhhhhHHHh-h---h-------ccchhHHHHHHHHHhhhheEEEEEecceeccCCCcc
Confidence 6788889999999999999999998888876 1 1 11566667665543 455666677789999999
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccC-ccchhheeeEcCHHHHHHH
Q 012095 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAAC 324 (471)
Q Consensus 246 ~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~R~G~v~~~~~~i~~l 324 (471)
| +++|.+++++| +.++++||+|.-+.++..+......+..+.+..|..++++|++| ..| ||..+|+++++.+
T Consensus 211 P---l~ei~~La~kY-gaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~G---Gyttgp~~li~ll 283 (417)
T KOG1359|consen 211 P---LEEISQLAKKY-GALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASG---GYTTGPKPLISLL 283 (417)
T ss_pred c---HHHHHHHHHhc-CcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCC---CCccCChhHHHHH
Confidence 9 99999999999 99999999999887765544444444445677799999999986 555 9999999999999
Q ss_pred HHHHhcccCCC--ChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCC
Q 012095 325 NKIQSQFTSGA--SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGS 402 (471)
Q Consensus 325 ~~~~~~~~~~~--~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~ 402 (471)
+...+++.++. ++...-.+.++++. .-.-.......+.+.+++.+.++.. |+.+......+ +.+.+.+.
T Consensus 284 rqr~RpylFSnslppavV~~a~ka~dl----lm~s~~~i~~~~a~~qrfr~~me~a-GftIsg~~hPI-~pv~lGda--- 354 (417)
T KOG1359|consen 284 RQRSRPYLFSNSLPPAVVGMAAKAYDL----LMVSSKEIQSRQANTQRFREFMEAA-GFTISGASHPI-CPVMLGDA--- 354 (417)
T ss_pred HhcCCceeecCCCChhhhhhhHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHhc-CceecCCCCCc-cceecccH---
Confidence 87766654432 22222223333332 1111233334444555555555444 88776433222 33334322
Q ss_pred cccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCC---CcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012095 403 EAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD---TCIRISYAA--SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 403 ~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~---~~iRis~~~--~~e~i~~~~~~l~~~l~~~~ 466 (471)
..+..++++|++. ||+|..-++.-.+ ..+|+.+++ ++|+|++.++++.++.+-+.
T Consensus 355 --------~lA~~~ad~lLk~-Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr~~~ 414 (417)
T KOG1359|consen 355 --------RLASKMADELLKR-GIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGRFLN 414 (417)
T ss_pred --------HHHHHHHHHHHhc-CceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHHhhc
Confidence 2467889999987 9999876655433 368887775 99999999999998876543
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-19 Score=184.88 Aligned_cols=349 Identities=12% Similarity=0.096 Sum_probs=213.8
Q ss_pred hcCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcEEE-eCChHH
Q 012095 92 QAGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILV-SNGAKQ 166 (471)
Q Consensus 92 ~~g~~~i~l~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~-~~i~i-t~G~~~ 166 (471)
..|+.+||+..|.. .++. +|.+.+++.+++.+....+ ......+.+..+++.+.+....+-.. +.+++ ++++++
T Consensus 36 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~-~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGse 114 (425)
T PRK09264 36 EDGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGITH-GLDMHTTAKREFLETFEETILKPRGLDYKVQFTGPTGTN 114 (425)
T ss_pred CCCCEeeecccchhhccCCCCCHHHHHHHHHHHHhccccc-ccccCcHHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHH
Confidence 36888999988863 3444 7899999999887521111 11112355666666665432111111 25655 589999
Q ss_pred HHHHHHHHhcC-CC-CeEEEcCCCCCChHHHHHHc-C------------CEEEEecCCCCCCC-cCCHHHHHhhhcc---
Q 012095 167 SILQAVLAVCS-PG-DEVIIPAPFWVSYPEMARIA-D------------ATPVILPTRISENF-LLDPKVLESKLTE--- 227 (471)
Q Consensus 167 al~~~~~~l~~-~g-d~Vlv~~p~y~~~~~~~~~~-G------------~~~~~v~~~~~~~~-~ld~e~l~~~l~~--- 227 (471)
+...+++.... +| ..|+....+|++....+... | ..+..+|....... .-|++.+++.+.+
T Consensus 115 A~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~ 194 (425)
T PRK09264 115 AVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSS 194 (425)
T ss_pred HHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccC
Confidence 99988886531 33 67888888888876433222 1 02334443210000 0267788887742
Q ss_pred ---CCcEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcc
Q 012095 228 ---KSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 303 (471)
Q Consensus 228 ---~~~~i~i~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 303 (471)
+..+|++...+...|. +.+++.+++|.++|++| |+++|+||++.++...|.. ..+....-..| +.+|||.
T Consensus 195 ~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEV~tG~GrtG~~-~~~~~~~v~PD----i~t~~K~ 268 (425)
T PRK09264 195 GVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKH-DILLIVDDIQAGCGRTGTF-FSFERAGITPD----IVTLSKS 268 (425)
T ss_pred CCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHc-CcEEEEechhhCCccccHH-HHHhhcCCCCC----EEEeccc
Confidence 2345555444555675 67899999999999999 9999999999875333321 11111111112 4477999
Q ss_pred cCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC----CC
Q 012095 304 FAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE----LE 379 (471)
Q Consensus 304 ~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~----~~ 379 (471)
++..|+++|++++++++ ..+.......+++.++++..++.++|..-.. + .++.+..+++.+++.+.|++ .+
T Consensus 269 l~~~G~pigav~~~~~i-~~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~-~---~~l~~~~~~~g~~l~~~l~~l~~~~~ 343 (425)
T PRK09264 269 ISGYGLPMALVLIKPEL-DVWKPGEHNGTFRGNNLAFVTATAALEEYWS-D---DAFEKEVKAKGELVRERLEEIAAKYP 343 (425)
T ss_pred cCCCccceEEEEEchhh-hccCCCccCCCCCCCHHHHHHHHHHHHHHHh-h---hHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 98449999999999886 3443322334566788888777777742110 1 12333444444444444433 33
Q ss_pred CCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHH
Q 012095 380 GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVER 457 (471)
Q Consensus 380 g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~i~~~~~~ 457 (471)
.+.......|+++++.+++. .....+++.++++ ||.+.++..+ ...||++.. .+++++++++++
T Consensus 344 ~~~~~vrg~Gl~~~i~l~~~-----------~~~~~l~~~~~~~-Gv~~~~~~~~--~~~lr~~p~l~~t~~ei~~~~~~ 409 (425)
T PRK09264 344 GLGAEVRGRGMMQGIDFGDG-----------ELAGKIAAEAFEN-GLIIETSGPE--DEVVKLLPPLTIDEEELEEGLDI 409 (425)
T ss_pred CceecceecccEEEEEecCh-----------HHHHHHHHHHHHC-CCEEeccCCC--CCEEEEeCCCCCCHHHHHHHHHH
Confidence 23222234577788888642 1356788888776 9999885433 367888866 489999999999
Q ss_pred HHHHHHhhC
Q 012095 458 IKKGLLTLR 466 (471)
Q Consensus 458 l~~~l~~~~ 466 (471)
|.++++++.
T Consensus 410 l~~~l~~~~ 418 (425)
T PRK09264 410 LEEAVAEVL 418 (425)
T ss_pred HHHHHHHHH
Confidence 999987754
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-19 Score=177.13 Aligned_cols=353 Identities=15% Similarity=0.174 Sum_probs=237.7
Q ss_pred HHHHHHHhcCCCeEEcCCCCCCCCC-----hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEE
Q 012095 85 DQATALAQAGVSVIRLAAGEPDFDT-----PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQIL 159 (471)
Q Consensus 85 ~~~~~~~~~g~~~i~l~~g~~~~~~-----p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~ 159 (471)
++.+.+++.|.+...|...+-.... -.++.++....+..+...|..++...+|.+++++++ ..+.++
T Consensus 19 ~r~~~l~~ag~n~f~l~~~~v~iDLltDsgT~aMs~~q~a~~~~GDe~yag~~s~~~lE~~va~~~--------G~~~av 90 (450)
T TIGR02618 19 EREKKMQEAGYNTFLLNSEDVYIDLLTDSGTNAMSDKQWAGLMMGDEAYAGSRNFYHLERTVRELY--------GFKYVV 90 (450)
T ss_pred HHHHHHHHcCCCcccCccCceEEEcccCCCcHHHHHHHHHHhhhcchhhcCCCcHHHHHHHHHHHH--------CCCeEE
Confidence 4455666788877777777732221 145555534444445567988888999999999997 345899
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCC-CChHHHHHHcCCEEEEecCCC--------CCCCcCCHHHHHhhhcc---
Q 012095 160 VSNGAKQSILQAVLAVCSPGDEVIIPAPFW-VSYPEMARIADATPVILPTRI--------SENFLLDPKVLESKLTE--- 227 (471)
Q Consensus 160 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y-~~~~~~~~~~G~~~~~v~~~~--------~~~~~ld~e~l~~~l~~--- 227 (471)
.+++++.++.++....++|||+| +.++| .++...+...|+.++.++.++ ...+.+|++.+++++++
T Consensus 91 ~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~Tt~ahIe~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~ 168 (450)
T TIGR02618 91 PTHQGRGAENLLSQIAIKPGDYV--PGNMYFTTTRYHQEKNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGA 168 (450)
T ss_pred EcCCHHHHHHHHHHhCCCCcCEE--CCceeHHHHHHHHHhCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhccccC
Confidence 99999999998877778999987 66777 444445788999777775431 23467999999999975
Q ss_pred -CCcEEEEcCCCC-CcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCcc--cc-----CCCCccccc----cCCCCCCce
Q 012095 228 -KSRLLILCSPSN-PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI--IY-----APATHTSFA----SLPGMWERT 294 (471)
Q Consensus 228 -~~~~i~i~~p~N-PtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~--~~-----~~~~~~~~~----~~~~~~~~~ 294 (471)
++++|.+.+++| .+|.++|.+++++|.++|++| |+.||+|.+.... .+ .+....++. .+.. .-.
T Consensus 169 ~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~-Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~--~aD 245 (450)
T TIGR02618 169 DKIPYICLAVTVNLAGGQPVSMANMREVRELCEAH-GIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMS--YAD 245 (450)
T ss_pred cccCceEEEEecccCCCeeCCHHHHHHHHHHHHHc-CCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhc--cCc
Confidence 344677888887 558999999999999999999 9999999987641 11 111122331 1111 112
Q ss_pred EEEecCCcccCcc-chhheeeE-cCHHHHHHHHHHHhcccC-----CCChHHHHHHHHHHhccCCChHHHHHH-HHHHHH
Q 012095 295 LTVNGFSKAFAMT-GWRLGYIA-GPKHFVAACNKIQSQFTS-----GASSISQKAGVAALGLGYAGGEVVSKM-VKAFRE 366 (471)
Q Consensus 295 i~~~S~SK~~g~~-G~R~G~v~-~~~~~i~~l~~~~~~~~~-----~~~~~~q~aa~~~L~~~~~~~~~~~~~-~~~~~~ 366 (471)
.++.|..|..+.+ | |+++ .++++++++++....+.. +...-...++...|.+ +++.. .++-..
T Consensus 246 ~~~~S~~Kd~~~~~G---G~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e------~~~~~y~~~r~~ 316 (450)
T TIGR02618 246 GCTMSGKKDCLVNIG---GFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIRE------AVDYEYIEHRVK 316 (450)
T ss_pred EEEEeeccCCCCCCc---eEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHH------hhhHHHHHHHHH
Confidence 4788888988766 5 7777 688899998877443311 1122222233333432 22222 222233
Q ss_pred HHHHHHHHhcCCCCCeeeCCCcceEEeEecCCcc-CCcccCCCCCCCHHHHHHHHHHcCCEEEE-CCCCC-CC-------
Q 012095 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYY-GSEAEGFGKIENSESLCRYLLDKAQVALV-PGDAF-GD------- 436 (471)
Q Consensus 367 ~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~-pg~~f-~~------- 436 (471)
+.++|.+.|.+. |+.+..|.+|.-++++..... +.....+ ....++-.|..+.||--. -|+.. +.
T Consensus 317 ~a~~La~~L~~~-Gvpv~~p~ggh~V~vda~~~lph~~~~~~----p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~ 391 (450)
T TIGR02618 317 QVRYLGDKLKAA-GVPIVEPVGGHAVFLDARRFLPHIPQDQF----PAQSLAASIYVETGVRSMERGIVSAGRNNVTGEH 391 (450)
T ss_pred HHHHHHHHHHHC-CCcccCCCCcceEEEEhHHhCCCCChhhC----hHHHHHHHHHHHhCccEEeecceecccCCCCCcc
Confidence 567788888888 998888888888888865431 1111222 678888888888898543 34321 11
Q ss_pred ----CCcEEEEeec---CHHHHHHHHHHHHHHHHh
Q 012095 437 ----DTCIRISYAA---SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 437 ----~~~iRis~~~---~~e~i~~~~~~l~~~l~~ 464 (471)
-..+|+++.. |.+.++...++|..+.++
T Consensus 392 ~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~ 426 (450)
T TIGR02618 392 HRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKH 426 (450)
T ss_pred cCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence 1479999987 889999999999888764
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-19 Score=182.48 Aligned_cols=336 Identities=16% Similarity=0.086 Sum_probs=207.8
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHH-HcCCCCCCC---CCCCHHHHHHHHH----HHHHHhCCCCCCCcEEEeCChHH
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAI-REGFTRYTP---NAGTLELRSAICH----KLKEENGLSYTPDQILVSNGAKQ 166 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~-~~~~~~Y~~---~~G~~~lr~~ia~----~~~~~~g~~~~~~~i~it~G~~~ 166 (471)
++.|+|-..++.. +|.+++++..++ .....+|+. ..|. +..+.+.+ .+++.+|. ..-++.+++++.
T Consensus 28 ~~~~~l~~sen~~--~p~v~~a~~~~~~~~~~~g~~gsr~~~G~-~~~~~lE~~~~~~la~l~g~---~~alv~~~SG~~ 101 (416)
T PRK13034 28 QDHLELIASENFT--SPAVMEAQGSVLTNKYAEGYPGKRYYGGC-EFVDEVEALAIERAKQLFGC---DYANVQPHSGSQ 101 (416)
T ss_pred hcCeeecccccCC--CHHHHHHhcchhhcCCCCCCCCCcccCCC-hHHHHHHHHHHHHHHHHhCC---CceEEecCCcHH
Confidence 4578888777764 778888888775 321111111 1232 33444444 66666663 233345678888
Q ss_pred HHHHHHHHhcCCCCeEEEcCCCCCC-hHHHHHH--cCCEE--EEecCCCCCCCcCCHHHHHhhhc-cCCcEEEEcCCCCC
Q 012095 167 SILQAVLAVCSPGDEVIIPAPFWVS-YPEMARI--ADATP--VILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNP 240 (471)
Q Consensus 167 al~~~~~~l~~~gd~Vlv~~p~y~~-~~~~~~~--~G~~~--~~v~~~~~~~~~ld~e~l~~~l~-~~~~~i~i~~p~NP 240 (471)
++..++.++++|||+|+++..+|.+ +...++. .+... +.++++.. ++.+|++++++.+. .++|+|++.++.
T Consensus 102 A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~~~le~~l~~~~~klVi~~~~~-- 178 (416)
T PRK13034 102 ANGAVYLALLKPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRL-TGLIDYDEVEELAKEHKPKLIIAGFSA-- 178 (416)
T ss_pred HHHHHHHHhcCCCCEEEEcCccceeeeecCCcceeccceeeeEEcccccc-cCCcCHHHHHHHHhhcCCeEEEECCCc--
Confidence 9999999999999999999998876 2322222 12222 34544432 45689999999884 368888776654
Q ss_pred cccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHH
Q 012095 241 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 320 (471)
Q Consensus 241 tG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~ 320 (471)
+|...+ +.+|.++|++| ++++|+|+++....+.... ....+ .+..+++.|++|.++ |-..|+++++++.
T Consensus 179 ~g~~~d---l~~l~~la~~~-g~~livD~Aha~G~~~~g~--~~~~~---~~~Di~~~s~~K~l~--g~~GG~v~~~~~~ 247 (416)
T PRK13034 179 YPRELD---FARFREIADEV-GALLMVDMAHIAGLVAAGE--HPNPF---PHAHVVTTTTHKTLR--GPRGGMILTNDEE 247 (416)
T ss_pred cccccC---HHHHHHHHHHc-CCEEEEeCcccccCcccCC--CCCCC---CCceEEEEeCcccCC--CCCCeEEEECcHH
Confidence 467777 88889999999 9999999999875543211 11111 234589999999993 2223888776554
Q ss_pred -HHHHHHHHhcc-cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC-CcceEEeEecC
Q 012095 321 -VAACNKIQSQF-TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QGAFYLFIDFS 397 (471)
Q Consensus 321 -i~~l~~~~~~~-~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p-~~g~~~~~~~~ 397 (471)
.+.++...... ..++.+....++..++... ......+.++++.++.+++.+.|.+. |+.+..+ .....+++.+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~--~~~~~~~~~~~l~~~a~~l~~~L~~~-G~~~~~~~~~t~i~~v~~~ 324 (416)
T PRK13034 248 IAKKINSAVFPGLQGGPLMHVIAAKAVAFGEA--LQPEFKTYAKQVIANAQALAEVLKER-GYDLVSGGTDNHLLLVDLR 324 (416)
T ss_pred HHHHHHhhcCCcccCCccHHHHHHHHHHHHHH--hChhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCCCCCcEEEEEcC
Confidence 44444432211 1223333333333233221 01223456788889999999999888 8887642 22333566665
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECC------CCCCCCCcEEEEeec------CHHHHHHHHHHHHHHHHh
Q 012095 398 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG------DAFGDDTCIRISYAA------SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg------~~f~~~~~iRis~~~------~~e~i~~~~~~l~~~l~~ 464 (471)
.. + .+...+.+.| ++.||.+.+- .....+..+|++... ++++++++++.|.+++.+
T Consensus 325 ~~-~---------~~~~~~~~~L-~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~~ 392 (416)
T PRK13034 325 PK-G---------LSGKDAEQAL-ERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLDD 392 (416)
T ss_pred CC-C---------CCHHHHHHHH-HhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 32 0 1344555655 4559998752 112234679998654 579999999999988874
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.5e-21 Score=185.67 Aligned_cols=225 Identities=19% Similarity=0.235 Sum_probs=154.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCC
Q 012095 130 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR 209 (471)
Q Consensus 130 ~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~ 209 (471)
|..-+.++++.+++++ | ..+.+++++|+++++..++.++++|||.|+++.++|.+....+...|++++.++.+
T Consensus 57 ~~g~i~~~~~~~A~~~----g---a~~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~ 129 (294)
T cd00615 57 PTGPIKEAQELAARAF----G---AKHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSGAVPVYLKPE 129 (294)
T ss_pred CChHHHHHHHHHHHHh----C---CCCEEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHHHCCCEEEEecCc
Confidence 4434567777777775 3 23455569999999999999999999999999999999999999999999999876
Q ss_pred CCCC----CcCCHHHHHhhhc--cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCc-cccCCCCcc
Q 012095 210 ISEN----FLLDPKVLESKLT--EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHT 282 (471)
Q Consensus 210 ~~~~----~~ld~e~l~~~l~--~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~-~~~~~~~~~ 282 (471)
.+.+ ..+|+++++++++ ++++++++++| ||||.+++ +++|+++|+++ +++||+||+|.. +.|.+....
T Consensus 130 ~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~d---l~~I~~~~~~~-g~~livDeA~~~~~~~~~~~~~ 204 (294)
T cd00615 130 RNPYYGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYN---LRKIVEEAHHR-GLPVLVDEAHGAHFRFHPILPS 204 (294)
T ss_pred cCcccCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecC---HHHHHHHHHhc-CCeEEEECcchhhhccCcccCc
Confidence 5443 3689999999986 36889999998 78999999 89999999999 999999999974 334332111
Q ss_pred ccccCCCCCCceEEEecCCcccCccchhheeeE-cCHHH--HHHHHHHHh-cccCCCChHHHHHHHHHHhccCCChHHHH
Q 012095 283 SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA-GPKHF--VAACNKIQS-QFTSGASSISQKAGVAALGLGYAGGEVVS 358 (471)
Q Consensus 283 ~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~-~~~~~--i~~l~~~~~-~~~~~~~~~~q~aa~~~L~~~~~~~~~~~ 358 (471)
... ..+..+++.|++|++ +|++.|+++ .+.+. .+++..... ..+.+++.+...++..++.. ....-.
T Consensus 205 ~~~----~~~~div~~S~hK~l--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ttsps~~~~asl~~a~~~---~~~~g~ 275 (294)
T cd00615 205 SAA----MAGADIVVQSTHKTL--PALTQGSMIHVKGDLVNPDRVNEALNLHQSTSPSYLILASLDVARAM---MALEGK 275 (294)
T ss_pred chh----hcCCcEEEEchhccc--chHhHHHHHHhCCCcCCHHHHHHHHHHHCCCCcHHHHHHHHHHHHHH---HHHHhH
Confidence 111 236779999999985 788876544 44331 233333222 22334444444444444432 011122
Q ss_pred HHHHHHHHHHHHHHHHh
Q 012095 359 KMVKAFRERRDFLVKSF 375 (471)
Q Consensus 359 ~~~~~~~~~r~~l~~~L 375 (471)
+..++..++.+.+++.|
T Consensus 276 ~~~~~~~~~~~~~r~~l 292 (294)
T cd00615 276 ELVEELIELALYARQEI 292 (294)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444555555544
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-19 Score=180.39 Aligned_cols=213 Identities=14% Similarity=0.162 Sum_probs=148.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChH----HHHHHcCCEEEEecC
Q 012095 133 GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVILPT 208 (471)
Q Consensus 133 G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~G~~~~~v~~ 208 (471)
-...|++.++++. | ....+++++| +.++..++ .+++|||+|++++|.|.+.. ..+...|++++.++.
T Consensus 51 ~~~~Le~~la~l~----g---~~~al~~~SG-~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~ 121 (380)
T PRK06176 51 TRFALEELIADLE----G---GVKGFAFASG-LAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDT 121 (380)
T ss_pred hHHHHHHHHHHHh----C---CCCEEEECCH-HHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCC
Confidence 3566777777764 3 2234555555 56887655 57799999999999997654 345667888888864
Q ss_pred CCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCC
Q 012095 209 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 288 (471)
Q Consensus 209 ~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 288 (471)
.|++++++++++++++|++++|+||||.+.+ +++|+++|++| +++||+|++|....+. .++ .
T Consensus 122 -------~d~e~l~~ai~~~t~lV~lesP~Nptg~~~d---i~~I~~la~~~-gi~vivD~t~a~~~~~----~p~-~-- 183 (380)
T PRK06176 122 -------SDLSQIKKAIKPNTKALYLETPSNPLLKITD---LAQCASVAKDH-GLLTIVDNTFATPYYQ----NPL-L-- 183 (380)
T ss_pred -------CCHHHHHHhcCcCceEEEEECCCCCCceecC---HHHHHHHHHHc-CCEEEEECCccccccC----Ccc-c--
Confidence 3899999999999999999999999999999 88999999999 9999999999864321 111 1
Q ss_pred CCCCceEEEecCCcccCccc-hhheeeEc-CHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 012095 289 GMWERTLTVNGFSKAFAMTG-WRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366 (471)
Q Consensus 289 ~~~~~~i~~~S~SK~~g~~G-~R~G~v~~-~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~ 366 (471)
.+..+++.|++|.++-+| .-.|++++ ++++.+++...+.....+.++...+.+...+. .+....++..+
T Consensus 184 --~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~gl~-------tl~~R~~~~~~ 254 (380)
T PRK06176 184 --LGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIK-------TLGLRMEAHQK 254 (380)
T ss_pred --cCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccC-------cHHHHHHHHHH
Confidence 234499999999996444 34577777 45677777766665454455554333322221 23334444445
Q ss_pred HHHHHHHHhcCCCCC
Q 012095 367 RRDFLVKSFGELEGV 381 (471)
Q Consensus 367 ~r~~l~~~L~~~~g~ 381 (471)
+...+.+.|++.|.+
T Consensus 255 ~a~~la~~L~~~p~v 269 (380)
T PRK06176 255 NALCVAEFLEKHPKV 269 (380)
T ss_pred HHHHHHHHHHhCCCe
Confidence 566666777766554
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-19 Score=182.23 Aligned_cols=346 Identities=16% Similarity=0.086 Sum_probs=216.2
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.++|+..|. ..++. +|.+.+++.+++.+..... ...-..+.+..+++.+.+..+. ..+.++++++++++..
T Consensus 40 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~-~~~~~~~~~~~la~~l~~~~p~--~~~~v~f~~sGseA~e 116 (423)
T PRK05964 40 DGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVI-FAGFTHEPAERLAQRLVALTPG--GLDHVFFSDSGSVAVE 116 (423)
T ss_pred CCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCCcc-ccccCCHHHHHHHHHHHHhCCC--CCCEEEEeCCcHHHHH
Confidence 688899998885 34444 6899999999887632111 1011235566777777655431 2368999999999999
Q ss_pred HHHHHhcC-------CC-CeEEEcCCCCCChHHHHHHcCC-------------EEEEecCCCCCCCcCCHHHHHhhhcc-
Q 012095 170 QAVLAVCS-------PG-DEVIIPAPFWVSYPEMARIADA-------------TPVILPTRISENFLLDPKVLESKLTE- 227 (471)
Q Consensus 170 ~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~ld~e~l~~~l~~- 227 (471)
.+++.... +| ..|+..+.+|++....+..... .+..++....+....+++.+++.+.+
T Consensus 117 ~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~ 196 (423)
T PRK05964 117 VALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKH 196 (423)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhC
Confidence 98886521 34 5788888888876543322111 12223322111001127888888742
Q ss_pred --CCcEEEEcC-CCCCcccCC-CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcc
Q 012095 228 --KSRLLILCS-PSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 303 (471)
Q Consensus 228 --~~~~i~i~~-p~NPtG~~~-~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 303 (471)
+..+|++.. .++.+|... +.+.+++|.++|++| |+++|+||++.++...|.. ... .. .+...-+.++||.
T Consensus 197 ~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~-g~llI~DEv~tg~gr~G~~-~a~-~~---~~v~pDi~~~~K~ 270 (423)
T PRK05964 197 AGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRH-GVLLIFDEIATGFGRTGTL-FAC-EQ---AGVSPDIMCLSKG 270 (423)
T ss_pred CCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcCcch-hHH-Hh---cCCCCCeeeeehh
Confidence 344555543 366778655 899999999999999 9999999999876443321 111 11 1111224578999
Q ss_pred cCccc-hhheeeEcCHHHHHHHHHH------HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhc
Q 012095 304 FAMTG-WRLGYIAGPKHFVAACNKI------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 376 (471)
Q Consensus 304 ~g~~G-~R~G~v~~~~~~i~~l~~~------~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~ 376 (471)
++ .| +++|++++++++++.+... ....+++.++++..++.++|+.-. .++++++..+.-+..++.+.+ +.
T Consensus 271 l~-gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~-~~~~~~~~~~~g~~l~~~l~~-l~ 347 (423)
T PRK05964 271 LT-GGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFE-DEPVLERVAALSAGLAEGLEP-FR 347 (423)
T ss_pred hh-cCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHh-hc
Confidence 97 55 8999999999999887531 122345678899888888887311 123444444443334433332 22
Q ss_pred CCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHH
Q 012095 377 ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAA 454 (471)
Q Consensus 377 ~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~i~~~ 454 (471)
+.+.+.-....| ..+.+.+.+... ......+.+.|+++ ||.+.+.. +.+|++.. .++++|+++
T Consensus 348 ~~~~i~~vrg~G-l~~~i~l~~~~~--------~~~~~~l~~~l~~~-Gv~v~~~~-----~~lR~~p~l~~t~edId~~ 412 (423)
T PRK05964 348 DLPGVADVRVLG-AIGAVELDRPVL--------ERDGPALRAFALER-GVLLRPLG-----NTIYLMPPYIITAEELDRI 412 (423)
T ss_pred cCCCeEEeeccc-EEEEEEeccCcc--------hhHHHHHHHHHHHC-CeEEEecC-----CEEEEeCCcccCHHHHHHH
Confidence 334332223334 445555643200 00255788888765 99998742 47999977 499999999
Q ss_pred HHHHHHHHHhh
Q 012095 455 VERIKKGLLTL 465 (471)
Q Consensus 455 ~~~l~~~l~~~ 465 (471)
+++|+++++++
T Consensus 413 v~~l~~al~~~ 423 (423)
T PRK05964 413 TDAIVEVADEL 423 (423)
T ss_pred HHHHHHHHhhC
Confidence 99999999764
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-19 Score=176.68 Aligned_cols=346 Identities=16% Similarity=0.188 Sum_probs=229.9
Q ss_pred cCCCeEEcCCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~~~--~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|..+||+..+.-+ ++. +|.|.+|+.+++.++. .|+.+ .++.-.+++.+.+..+ ..+.|-++|++|+|..
T Consensus 51 DGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~G~-~fg~P---te~Ei~~Aell~~~~p---~~e~vrfvnSGTEAtm 123 (432)
T COG0001 51 DGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLERGL-SFGAP---TELEVELAELLIERVP---SIEKVRFVNSGTEATM 123 (432)
T ss_pred CCCEeeehhccCcccccCCCCHHHHHHHHHHHHhcC-CCCCC---CHHHHHHHHHHHHhcC---cccEEEEecchhHHHH
Confidence 67889999888844 333 6889999999998875 46543 3556666677766554 5589999999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCChHHHHHH-cC--C-----------------EEEEecCCCCCCCcCCHHHHHhhhcc
Q 012095 170 QAVLAVC--SPGDEVIIPAPFWVSYPEMARI-AD--A-----------------TPVILPTRISENFLLDPKVLESKLTE 227 (471)
Q Consensus 170 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~-~G--~-----------------~~~~v~~~~~~~~~ld~e~l~~~l~~ 227 (471)
.+++..- -..|.|+..+-+|++..+.+.. +| . ..+.+|+ + |++.+++++.+
T Consensus 124 sAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~y------N-D~~al~~~~~~ 196 (432)
T COG0001 124 SAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPY------N-DLEALEEAFEE 196 (432)
T ss_pred HHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecC------C-CHHHHHHHHHH
Confidence 8888652 2348899999999988765432 22 1 1222222 2 99999999875
Q ss_pred C---CcEEEE-cCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcc
Q 012095 228 K---SRLLIL-CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 303 (471)
Q Consensus 228 ~---~~~i~i-~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 303 (471)
. ..+|++ +-..|..=+...++.+++|.++|++| +.++|.||+...|...-.+...+..+.++ +.+|+|.
T Consensus 197 ~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~-G~lLI~DEViTGFR~~~gGaq~~~gi~PD------lttlGKi 269 (432)
T COG0001 197 YGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEH-GALLIFDEVITGFRVALGGAQGYYGVEPD------LTTLGKI 269 (432)
T ss_pred cCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHc-CcEEEEecchhhcccCCcccccccCcCcc------hhhhhhh
Confidence 3 334444 33377555577788899999999999 99999999999887653344445555433 7779999
Q ss_pred cCccchhheeeEcCHHHHHHHHHH---HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 012095 304 FAMTGWRLGYIAGPKHFVAACNKI---QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 380 (471)
Q Consensus 304 ~g~~G~R~G~v~~~~~~i~~l~~~---~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g 380 (471)
+| .|+.+|.+.+++++++.+... .+..+++.++++..|..+.|+.-...+...+++.+.-.+.++-+.+.+.+. |
T Consensus 270 IG-GGlP~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~~~-g 347 (432)
T COG0001 270 IG-GGLPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAERH-G 347 (432)
T ss_pred hc-CCcceeeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh-C
Confidence 99 999999999999999977533 334567789999999998887521101123333333333344444444444 6
Q ss_pred Ceee-CCCcceEE-eEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHH
Q 012095 381 VKMS-EPQGAFYL-FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERI 458 (471)
Q Consensus 381 ~~~~-~p~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l 458 (471)
+.+. .-.+++|- ++.-...........+....-..++..|+++ ||++.|+. | ...=+|.++++++|++.++++
T Consensus 348 ~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~-GV~l~ps~-~---ea~flS~ahte~di~~~~~a~ 422 (432)
T COG0001 348 IPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNR-GVYLAPSQ-F---EAGFLSTAHTEEDIDRTLEAA 422 (432)
T ss_pred CCeEEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhC-CcccCCcc-c---cceeeecccCHHHHHHHHHHH
Confidence 5543 23445543 3322111111111111111234666788876 99999964 1 123488888999999999999
Q ss_pred HHHHHhhC
Q 012095 459 KKGLLTLR 466 (471)
Q Consensus 459 ~~~l~~~~ 466 (471)
.++++++.
T Consensus 423 ~~~~~~~~ 430 (432)
T COG0001 423 DEAFKELA 430 (432)
T ss_pred HHHHHHhh
Confidence 99988765
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.4e-19 Score=172.15 Aligned_cols=308 Identities=20% Similarity=0.291 Sum_probs=212.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCC
Q 012095 111 VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFW 189 (471)
Q Consensus 111 ~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~y 189 (471)
....+++.+.+..++...|+ -..++.+++++|+ .....+.++++|.||.++++++ +.|||+|+++.-+|
T Consensus 15 ~~e~~~v~~vl~sg~i~~G~--~v~~FE~~~ae~~--------G~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~Tf 84 (374)
T COG0399 15 EEELAAVQEVLKSGWLTGGP--FVRRFEQAFAEYL--------GVKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTF 84 (374)
T ss_pred hHHHHHHHHHHHcCCeecCh--HHHHHHHHHHHHh--------CCCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCch
Confidence 56788888888887766644 4588999999996 4567888899999999999866 58999999999999
Q ss_pred CChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEcc
Q 012095 190 VSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 269 (471)
Q Consensus 190 ~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De 269 (471)
......+...|+++++|+++++ .|++|++.++++|++++|+|+..+- -|...+ +++|.++|++| +++||+|.
T Consensus 85 vATan~i~~~Ga~PVFvDid~~-T~nid~~~ie~aIt~~tKAIipVhl---~G~~~d---m~~i~~la~~~-~l~vIEDa 156 (374)
T COG0399 85 VATANAVLLVGAKPVFVDIDPD-TLNIDPDLIEAAITPRTKAIIPVHL---AGQPCD---MDAIMALAKRH-GLPVIEDA 156 (374)
T ss_pred HHHHHHHHHcCCeEEEEecCCc-ccCCCHHHHHHHcccCCeEEEEehh---ccCCCC---HHHHHHHHHHc-CCeEEEEc
Confidence 9999999999999999999874 5889999999999999999995443 577777 88999999999 99999999
Q ss_pred CCCccc-cCCCCccccccCCCCCCceEEEecC--CcccCccchhheeeEcC-HHHHHHHHHHHhccc-------------
Q 012095 270 IYEHII-YAPATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFT------------- 332 (471)
Q Consensus 270 ~y~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~g~~G~R~G~v~~~-~~~i~~l~~~~~~~~------------- 332 (471)
+++... |.|....++. .+.+.|| .|.++ +| --|.++.+ +++.++++.++.+..
T Consensus 157 Aqa~Ga~y~gk~vGt~G--------d~~~fSF~~~K~it-tg-EGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~ 226 (374)
T COG0399 157 AQAHGATYKGKKVGSFG--------DIGAFSFHATKNLT-TG-EGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEEL 226 (374)
T ss_pred chhccCeecCccccccc--------ceEEEEecCCCCcc-cc-CceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeec
Confidence 998644 4443222222 1556666 69987 55 56888875 567777766543321
Q ss_pred ---CCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC-CCcc---eE-EeEecCCccCCcc
Q 012095 333 ---SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGA---FY-LFIDFSTYYGSEA 404 (471)
Q Consensus 333 ---~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~-p~~g---~~-~~~~~~~~~~~~~ 404 (471)
+-.+.+..++...-|+ .+++..++-++..+...+.|++++++.+.. +.+. ++ ..+.+++. +
T Consensus 227 G~N~rm~~iqAAigl~QL~-------~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~~~~-~--- 295 (374)
T COG0399 227 GYNYRLTEIQAAIGLAQLE-------RLDEINERRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILVDEE-G--- 295 (374)
T ss_pred ccccCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCceeeeeeeEEEecCC-C---
Confidence 1223333333333333 344555555556666677787776554432 2222 22 23444431 1
Q ss_pred cCCCCCCCHHHHHHHHHHcCC----EEEECCCCC--------CC-----------CCcEEEEeec--CHHHHHHHHHHHH
Q 012095 405 EGFGKIENSESLCRYLLDKAQ----VALVPGDAF--------GD-----------DTCIRISYAA--SLTTLQAAVERIK 459 (471)
Q Consensus 405 ~~~~~~~~~~~l~~~Ll~~~g----V~v~pg~~f--------~~-----------~~~iRis~~~--~~e~i~~~~~~l~ 459 (471)
.+-..+.+.|.++ | +...|-... .. ...+.+-+.. +++++++.++.|+
T Consensus 296 ------~~R~~l~~~L~~~-gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~ 368 (374)
T COG0399 296 ------ISRDALMESLKEA-GVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALK 368 (374)
T ss_pred ------CCHHHHHHHHHhC-CCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHHH
Confidence 1446677766554 4 445552211 00 1246666554 8899999999999
Q ss_pred HHHHh
Q 012095 460 KGLLT 464 (471)
Q Consensus 460 ~~l~~ 464 (471)
+++..
T Consensus 369 ~~~~~ 373 (374)
T COG0399 369 EVLGS 373 (374)
T ss_pred HHhcc
Confidence 88753
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-19 Score=170.70 Aligned_cols=369 Identities=14% Similarity=0.179 Sum_probs=250.7
Q ss_pred ccccccccccccccCCChHHHHHHHHHHHHh----------c-CCCeEEcCCCC-CCCCChHHHHHHHHHHHHcC---CC
Q 012095 62 VQVDVSLSPRVNAVKPSKTVAITDQATALAQ----------A-GVSVIRLAAGE-PDFDTPVLIAEAGINAIREG---FT 126 (471)
Q Consensus 62 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~----------~-g~~~i~l~~g~-~~~~~p~~v~~a~~~~~~~~---~~ 126 (471)
++||..+.+.+..-+-...+..+...+++.. . .+++--.++|+ ....-++.+.+|+.+.+++. ..
T Consensus 127 F~Yd~ff~~~i~kKk~DhsYRvFk~vNRlA~~fP~A~~~se~t~k~VtVWCSNDYLgms~Hp~V~~A~~~tl~~hG~GAG 206 (570)
T KOG1360|consen 127 FDYDRFFREEIDKKKRDHSYRVFKNVNRLAKEFPLAHRYSEATEKKVTVWCSNDYLGMSRHPEVLDAMHDTLDRHGAGAG 206 (570)
T ss_pred ccHHHHHHHHHHhhhccchhHHHHHHhHhhhhccchhhccccccCceEEEecCccccccCChHHHHHHHHHHHHcCCCcC
Confidence 4556556555554444433333333322221 1 12333344454 55666899999999998751 11
Q ss_pred C----CCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCE
Q 012095 127 R----YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT 202 (471)
Q Consensus 127 ~----Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~ 202 (471)
+ -+.+.-..+|.+.++++.++... +--..+++.|-++ |..+.+. -||-+|.-++..+.+....++..++.
T Consensus 207 GTRNIsG~s~~hv~LE~eLA~LHqK~aA--LlFsSCfVANDst--LftLak~--lpgcei~SD~gNHASMI~GIrns~v~ 280 (570)
T KOG1360|consen 207 GTRNISGHSKHHVRLEAELADLHQKEAA--LLFSSCFVANDST--LFTLAKK--LPGCEIFSDEGNHASMIQGIRNSRVP 280 (570)
T ss_pred CccccCCCCchhhhHHHHHHHHhcCcce--eeeeeeeeccchH--HHHHHHH--CCCcEEeccccchHHHHHHhhhcCCc
Confidence 1 11223345666677766532111 0112333334433 3333332 38889999999999999999999988
Q ss_pred EEEecCCCCCCCcCCHHHHHhhhcc----CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCC
Q 012095 203 PVILPTRISENFLLDPKVLESKLTE----KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 278 (471)
Q Consensus 203 ~~~v~~~~~~~~~ld~e~l~~~l~~----~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~ 278 (471)
-..+..+ |+++|++++.. .||.|-+.+.+.++|.+.| +++|++++++| +.+-++||++.-..|++
T Consensus 281 K~IFrHN-------D~~hL~~lL~~~~~svPKivAFEtVhSM~Gavcp---leelcDvah~y-GAiTFlDEVHAVGlYG~ 349 (570)
T KOG1360|consen 281 KHIFRHN-------DLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCP---LEELCDVAHKY-GAITFLDEVHAVGLYGP 349 (570)
T ss_pred ceeeccC-------CHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCC---HHHHHHHHHHh-CceeeeehhhhhccccC
Confidence 6666542 88999988853 5788889999999999999 99999999999 99999999999888876
Q ss_pred CCccccccCCC-CCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccC--CCChHHHHHHHHHHhccCCChH
Q 012095 279 ATHTSFASLPG-MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS--GASSISQKAGVAALGLGYAGGE 355 (471)
Q Consensus 279 ~~~~~~~~~~~-~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~--~~~~~~q~aa~~~L~~~~~~~~ 355 (471)
.+.. +..-++ +..-.|+.+++.|+||.-| ||+.+...+++.++.+...+.+ +.++.....+..+++... .+
T Consensus 350 rGaG-vgerdGvm~kvDiIsGTLgKafGcVG---GYIAat~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk--~~ 423 (570)
T KOG1360|consen 350 RGAG-VGERDGVMHKVDIISGTLGKAFGCVG---GYIAATRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILK--SE 423 (570)
T ss_pred CCCC-ccccCCcchhhhhcccchhhhccccc---ceehhhhhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHh--hh
Confidence 5432 222222 2334588999999999898 9999999999999988665543 445555566666665311 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC
Q 012095 356 VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 435 (471)
Q Consensus 356 ~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~ 435 (471)
.-..++...+++..++.+.|.++ |+.+.+ .....+-+++.+. ..+.+.++.|+.++||+|.......
T Consensus 424 eg~~lR~~hqrnv~~~kq~l~~~-GiPVi~-~pSHIiPv~vgda-----------~l~~~~sd~Li~~h~iYvQaINyPT 490 (570)
T KOG1360|consen 424 EGRVLRRQHQRNVKYVKQLLMEL-GIPVIP-NPSHIIPVRVGDA-----------ALAKQASDILISKHNIYVQAINYPT 490 (570)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHc-CCcccC-CCcceeeeeccCH-----------HHHHHHHHHHHHhcCeEEEeccCCc
Confidence 12455666777888888999888 888874 4445577777653 1467889999999999999887665
Q ss_pred C---CCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012095 436 D---DTCIRISYAA--SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 436 ~---~~~iRis~~~--~~e~i~~~~~~l~~~l~~~~ 466 (471)
. ...+||+... +++.++.+++.+..+..++.
T Consensus 491 V~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v~ 526 (570)
T KOG1360|consen 491 VARGTERLRIAPTPHHTPQMMNILVNALLDVWNEVG 526 (570)
T ss_pred ccccceeeecCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 3 3578998765 88999999999999887754
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.5e-19 Score=177.48 Aligned_cols=342 Identities=15% Similarity=0.069 Sum_probs=227.1
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCC-------CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHH
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGF-------TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~-------~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~a 167 (471)
+..|.|-..++.. ++.+.+++...+.+.. ..|+......++.....++..+.||.. .-||-.-+|+..
T Consensus 49 ~~~l~LiasEN~~--s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~--~anvqp~Sg~~A- 123 (493)
T PRK13580 49 RSSLKLIASENYS--SLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAE--HAYVQPHSGADA- 123 (493)
T ss_pred hcCceEecccccC--CHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhCCC--cccccCCCcHHH-
Confidence 4568888787764 5567777766554421 234445566777777788888888853 356666666655
Q ss_pred HHHHHHHhcCC-------------------------------CCeEEEcCCCCCChH-----HHHHHcCCEEEEecCCCC
Q 012095 168 ILQAVLAVCSP-------------------------------GDEVIIPAPFWVSYP-----EMARIADATPVILPTRIS 211 (471)
Q Consensus 168 l~~~~~~l~~~-------------------------------gd~Vlv~~p~y~~~~-----~~~~~~G~~~~~v~~~~~ 211 (471)
...++.++++| ||+|+..++...++. ..+.....+.+.++++.+
T Consensus 124 n~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~ 203 (493)
T PRK13580 124 NLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPD 203 (493)
T ss_pred HHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhheeeeEecccCcc
Confidence 55578888876 899998766554332 122222356677777643
Q ss_pred CCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCC
Q 012095 212 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 291 (471)
Q Consensus 212 ~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~ 291 (471)
...+|++++++.++++++.|+++..+|- |...+ +++|.++|+++ ++++++|++|....+++...... .....
T Consensus 204 -~g~iD~d~l~~~~~~~~plvii~g~S~~-~~~~d---l~~i~eia~~~-gA~L~VD~AH~~Gligg~~~~~~--~~~~~ 275 (493)
T PRK13580 204 -TGLLDYDEIAALAREFKPLILVAGYSAY-PRRVN---FAKLREIADEV-GAVLMVDMAHFAGLVAGKVFTGD--EDPVP 275 (493)
T ss_pred -cCccCHHHHHHHHhhcCCEEEEeCcccc-CCCcC---HHHHHHHHHHc-CCEEEEECchhhceeccccchhh--cCCCC
Confidence 3569999999999988888888888776 44778 89999999999 99999999999766653322100 10112
Q ss_pred CceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHH
Q 012095 292 ERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 371 (471)
Q Consensus 292 ~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l 371 (471)
+..++++|++|++ .|-+.|++++++++++.+.+.......++.+....++..++.+-. .....+.++++.++.++|
T Consensus 276 ~~D~vtgT~hKaL--~GP~GG~I~~~~~l~~~L~~a~P~i~gg~l~p~iAA~avAl~e~~--~~ef~~y~~~l~~Na~~L 351 (493)
T PRK13580 276 HADIVTTTTHKTL--RGPRGGLVLAKKEYADAVDKGCPLVLGGPLPHVMAAKAVALAEAR--TPEFQKYAQQVVDNARAL 351 (493)
T ss_pred CCcEEEeCChhhc--cCCCeEEEEecHHHHHHHhhCCCcccCCCccHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHH
Confidence 3458899999998 233459999999999988654433333444444443444444311 112255678888899999
Q ss_pred HHHhcCCCCCeeeC-CCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC------CCcEEEEe
Q 012095 372 VKSFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD------DTCIRISY 444 (471)
Q Consensus 372 ~~~L~~~~g~~~~~-p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~------~~~iRis~ 444 (471)
.+.|.+. |+.+.. ...+..+++.+.+. ......+.+.|++.||.+.+-..... ...|||+.
T Consensus 352 a~~L~~~-G~~vv~ggTdshIV~V~lg~~-----------~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~ 419 (493)
T PRK13580 352 AEGFLKR-GARLVTGGTDNHLVLIDVTSF-----------GLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGT 419 (493)
T ss_pred HHHHHhc-CCCccCCCCCCCEEEEEeCCH-----------HHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEecc
Confidence 9999887 887652 22345578888642 01232344344556999986554433 35799997
Q ss_pred ec------CHHHHHHHHHHHHHHHHhh
Q 012095 445 AA------SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 445 ~~------~~e~i~~~~~~l~~~l~~~ 465 (471)
.. ++++++++++.|.++++..
T Consensus 420 ~A~ttrg~teedi~~iad~l~~~l~~~ 446 (493)
T PRK13580 420 PALTTLGMGSDEMDEVAELIVKVLSNT 446 (493)
T ss_pred chhhhcCCCHHHHHHHHHHHHHHHHhh
Confidence 75 5799999999999988753
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-19 Score=178.54 Aligned_cols=301 Identities=20% Similarity=0.242 Sum_probs=209.9
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChH-HHHHHHHHHhcC---CCCeEEEcCCCCCChHHHHHHcCCEEEEecC-
Q 012095 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAK-QSILQAVLAVCS---PGDEVIIPAPFWVSYPEMARIADATPVILPT- 208 (471)
Q Consensus 134 ~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~-~al~~~~~~l~~---~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~- 208 (471)
...+.+.+.+.+.+..|.+ +.+..++++|+| .++.+++.++-. +||+|+++.-+|.+....+..+|++++.++.
T Consensus 103 ~~~l~~~~e~~~~~~~G~~-~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~G~~pv~Vd~~ 181 (444)
T TIGR03531 103 LYKLTNKLVKDFLKLLGLR-SIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTAGFEPRVIETV 181 (444)
T ss_pred HHHHHHHHHHHHHHHcCCC-CCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHcCCeEEEeeee
Confidence 4566677777777777753 224688888888 577777666532 5899999999999999999999999999996
Q ss_pred CCCCCCcCCHHHHHhhhcc---CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccc
Q 012095 209 RISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 285 (471)
Q Consensus 209 ~~~~~~~ld~e~l~~~l~~---~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~ 285 (471)
..+++|.+|+++|++++++ +..++++.+|+ ||.+...+++++|+++|++| ++++|+|++|+... ..+.
T Consensus 182 ~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~--t~~~g~~ddL~eIa~la~k~-gI~lIvDaAyg~~~------~~~~ 252 (444)
T TIGR03531 182 LDGDELTTDVEDIERAIEEIGPDNILCVLSTTS--CFAPRSPDDIEEIAKICANY-DIPHIVNNAYGLQS------NKYM 252 (444)
T ss_pred ecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCC--cCCCcchhCHHHHHHHHHHc-CCEEEEECcCcCcC------hhhh
Confidence 2346799999999999986 45566677775 45545556699999999999 99999999998522 1111
Q ss_pred cC--CC-CCCc-eEEEecCCcccCccchhheeeE-c-CHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHH
Q 012095 286 SL--PG-MWER-TLTVNGFSKAFAMTGWRLGYIA-G-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 359 (471)
Q Consensus 286 ~~--~~-~~~~-~i~~~S~SK~~g~~G~R~G~v~-~-~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~ 359 (471)
.+ .+ ..++ .+++.|++|.+.++|+ |+++ + ++++++.+...... ...+.+.|.+...++.. ..+++++
T Consensus 253 ~~~~~g~~~Grad~vv~s~hK~l~~pg~--Gg~I~~~d~el~~~i~~~y~g--~~~~s~~~~~~~~ll~~---G~~g~~~ 325 (444)
T TIGR03531 253 ELINKAIKVGRVDAVVSSTDKNFMVPVG--GAIIYSFDENFIQEISKSYPG--RASASPSLDVLITLLSL---GSKGYLE 325 (444)
T ss_pred hhhhccccccCCCeEEEeCccCCCCCCC--EEEEEECCHHHHHHHHHhccC--CCCChHHHHHHHHHHHh---CHHHHHH
Confidence 11 01 0112 5778899999988876 5544 6 67888887765322 23556788888888876 4788999
Q ss_pred HHHHHHHHHHHHHHHhcCC---CCCeeeCC-CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCE---E-EECC
Q 012095 360 MVKAFRERRDFLVKSFGEL---EGVKMSEP-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV---A-LVPG 431 (471)
Q Consensus 360 ~~~~~~~~r~~l~~~L~~~---~g~~~~~p-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV---~-v~pg 431 (471)
+++++.++++++.+.|.++ -|..+... ...+-+-+.+....+ .+...+...|..+ +| - |.||
T Consensus 326 li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~~---------~~~~~~g~~l~~~-~v~g~r~v~~~ 395 (444)
T TIGR03531 326 LLKERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLKG---------KDPTMLGSMLYSR-RVTGPRVVTNG 395 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEecccccc---------cCHHHHHHHHHhC-CCCCceeecCC
Confidence 9999999999999999875 25555533 333434444432210 2566777777665 44 2 3455
Q ss_pred C-------CC---CCC------CcEEEEee--cCHHHHHHHHHHHHHH
Q 012095 432 D-------AF---GDD------TCIRISYA--ASLTTLQAAVERIKKG 461 (471)
Q Consensus 432 ~-------~f---~~~------~~iRis~~--~~~e~i~~~~~~l~~~ 461 (471)
. .| +.. .|+-++.+ .+.+|++.++.+|.++
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~ 443 (444)
T TIGR03531 396 DSKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKS 443 (444)
T ss_pred CceEECCEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence 5 22 221 25544433 3889999999999875
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-18 Score=167.83 Aligned_cols=325 Identities=20% Similarity=0.234 Sum_probs=242.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCC
Q 012095 109 TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPF 188 (471)
Q Consensus 109 ~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~ 188 (471)
.++.+.+++.+.. ..+..| -..++.+.+.+.+...++.. +.+-++++.+++.+++.++..+++|||+||+....
T Consensus 16 v~~~V~~am~~~~---~~h~s~--~F~~~~~~~~~~L~~v~~t~-~~~~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG 89 (383)
T COG0075 16 VPPRVLLAMARPM---VGHRSP--DFVGIMKEVLEKLRKVFGTE-NGDVVLLSGSGTLAMEAAVASLVEPGDKVLVVVNG 89 (383)
T ss_pred CCHHHHHHhcCCC---CCCCCH--HHHHHHHHHHHHHHHHhcCC-CCcEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCC
Confidence 4677777666432 223333 33566667777777777742 23556677889999999999999999999988776
Q ss_pred CCChH--HHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc--CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeE
Q 012095 189 WVSYP--EMARIADATPVILPTRISENFLLDPKVLESKLTE--KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLL 264 (471)
Q Consensus 189 y~~~~--~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~--~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ 264 (471)
..+.. ++++.+|++++.+.... +-.+|++++++++++ +.+++.+++--.+||+..| +++|+++|++| +.+
T Consensus 90 ~FG~R~~~ia~~~g~~v~~~~~~w--g~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnp---l~~I~~~~k~~-g~l 163 (383)
T COG0075 90 KFGERFAEIAERYGAEVVVLEVEW--GEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNP---LKEIAKAAKEH-GAL 163 (383)
T ss_pred hHHHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCc---HHHHHHHHHHc-CCE
Confidence 66544 78999999999998764 345899999999984 4677888777779999999 99999999999 999
Q ss_pred EEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCc-cchhheeeEcCHHHHHHHHHH---------------H
Q 012095 265 VLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM-TGWRLGYIAGPKHFVAACNKI---------------Q 328 (471)
Q Consensus 265 ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~-~G~R~G~v~~~~~~i~~l~~~---------------~ 328 (471)
+|+|.+-+. ++. . ..++ +|+-.+++.+--|.++. || +|++..+++.++++... .
T Consensus 164 ~iVDaVsS~---Gg~-~---~~vd-~wgiDv~itgSQK~l~~PPG--la~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~ 233 (383)
T COG0075 164 LIVDAVSSL---GGE-P---LKVD-EWGIDVAITGSQKALGAPPG--LAFVAVSERALEAIEERKHPSFYLDLKKWLKYM 233 (383)
T ss_pred EEEEecccC---CCc-c---cchh-hcCccEEEecCchhccCCCc--cceeEECHHHHHHHhcCCCCceeecHHHHHHHH
Confidence 999988764 121 1 1222 35666888889999964 44 78888888777765321 1
Q ss_pred ---hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC---CcceEEeEecCCccCC
Q 012095 329 ---SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP---QGAFYLFIDFSTYYGS 402 (471)
Q Consensus 329 ---~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p---~~g~~~~~~~~~~~~~ 402 (471)
..+.++++....++...+|+.- .++.++...++++++.+.++++++.+ |++.... .......+.+|..+
T Consensus 234 ~~~~~~p~Tppv~~i~aL~~al~~i--~~EGle~r~~RH~~~~~a~r~~~~al-Gl~~~~~~~~~s~tvta~~~P~g~-- 308 (383)
T COG0075 234 EKKGSTPYTPPVNLIYALREALDLI--LEEGLEARIARHRRLAEALRAGLEAL-GLELFADPERRSPTVTAIKVPEGV-- 308 (383)
T ss_pred hhcCCCCCCCCHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHc-CCccccCcccCCCceEEEECCCCC--
Confidence 2445667777778888888752 24668999999999999999999998 8877651 12233456677643
Q ss_pred cccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhCCCC
Q 012095 403 EAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRPGV 469 (471)
Q Consensus 403 ~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~~~~~ 469 (471)
+..++...+++++||.+.+|........+||.... +..++..++..|+.+++++..+.
T Consensus 309 ---------~~~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g~~~ 368 (383)
T COG0075 309 ---------DDKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMGNVRPEDVLAALAALEAALRELGVKV 368 (383)
T ss_pred ---------CcHHHHHHHHHhCCEEecccccccCccEEEEecCccCCHHHHHHHHHHHHHHHHHcCCcc
Confidence 44445557888999999998876667899999776 78999999999999999876543
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-18 Score=175.39 Aligned_cols=359 Identities=14% Similarity=0.112 Sum_probs=215.9
Q ss_pred hcCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-EEEeCChHHH
Q 012095 92 QAGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQ-ILVSNGAKQS 167 (471)
Q Consensus 92 ~~g~~~i~l~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~-i~it~G~~~a 167 (471)
..|+.+||+..|.. .++. ++.+.+++.+++.+....++ ..-..+.+..+++.+.+..+....... ++.+++++++
T Consensus 36 ~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~-~~~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA 114 (442)
T TIGR00709 36 VEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPLHT-LDLTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADA 114 (442)
T ss_pred CCCCEEEEccccHhhhcCCCCCHHHHHHHHHHHHhccCccc-cccCcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHH
Confidence 36888999988863 3444 78899999998876332221 112245666777777665432111134 4556899999
Q ss_pred HHHHHHHhcC-CC-CeEEEcCCCCCChHHHHHHcCC-------------EEEEecCCCCCC--CcC----CH----HHHH
Q 012095 168 ILQAVLAVCS-PG-DEVIIPAPFWVSYPEMARIADA-------------TPVILPTRISEN--FLL----DP----KVLE 222 (471)
Q Consensus 168 l~~~~~~l~~-~g-d~Vlv~~p~y~~~~~~~~~~G~-------------~~~~v~~~~~~~--~~l----d~----e~l~ 222 (471)
...+++.... .| ..|+....+|++....+..... .+..++...... |+. +. +.++
T Consensus 115 ~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (442)
T TIGR00709 115 VEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFE 194 (442)
T ss_pred HHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHH
Confidence 9988886431 33 6788888889887654443211 122233221000 000 11 1233
Q ss_pred hhhc------cCCcEEEEcCC-CCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceE
Q 012095 223 SKLT------EKSRLLILCSP-SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 295 (471)
Q Consensus 223 ~~l~------~~~~~i~i~~p-~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i 295 (471)
+.+. ++..++++... +|+...+.+++.+++|.++|++| |+++|.||+|.+|...|. ...+.......| |
T Consensus 195 ~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~-g~llI~DEV~tGfGRtG~-~~a~~~~gv~PD--i 270 (442)
T TIGR00709 195 NFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKH-DIKLILDEVQAGFGRSGT-MFAFEHAGIEPD--F 270 (442)
T ss_pred HHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCCCCc-hhHHHHcCCCCc--E
Confidence 3332 24556666444 55555678999999999999999 999999999998755442 222222221112 3
Q ss_pred EEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHh
Q 012095 296 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF 375 (471)
Q Consensus 296 ~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L 375 (471)
++ |||.++ .|+++|+++++++ ++.+.......+++.++++++++.++|+.- ++ +.+.+.++++.+++.+.|
T Consensus 271 v~--~gK~l~-~G~Pigav~~~~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i---~~--~~l~~~~~~~g~~l~~~L 341 (442)
T TIGR00709 271 VV--MSKAVG-GGLPLAVLLIAPE-FDAWQPAGHTGTFRGNQLAMVTGTEALNYW---KD--DNLAQNAQERGERITSFL 341 (442)
T ss_pred EE--Eccccc-CCcccEEEEEchH-HhccCCCcCCCCCCcCHHHHHHHHHHHHHH---Hh--cCHHHHHHHHHHHHHHHH
Confidence 33 899998 5899999999988 454432233467789999999999999741 11 234455666666666666
Q ss_pred cCC----CCCeeeCCCcceEEeEecCCccCCcc-c-CCC-CCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--
Q 012095 376 GEL----EGVKMSEPQGAFYLFIDFSTYYGSEA-E-GFG-KIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-- 446 (471)
Q Consensus 376 ~~~----~g~~~~~p~~g~~~~~~~~~~~~~~~-~-~~~-~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~-- 446 (471)
+++ +.+.-+... |.++.+.+.+...... . ... .......+...++++ ||++.+.... .+.+|+....
T Consensus 342 ~~l~~~~~~v~~vrG~-Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gvl~~~~~~~--~~~l~~~Ppl~i 417 (442)
T TIGR00709 342 DDMIKEHPCIGNVRGR-GLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFEN-GLLLETGGRE--GEVFRLLCPITI 417 (442)
T ss_pred HHHHHhCCCeeeeecc-ceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHC-CeEEeecCCC--CCEEEEECCCCC
Confidence 543 222222333 4445555532100000 0 000 000134566777765 9998774322 3678887775
Q ss_pred CHHHHHHHHHHHHHHHHhhCCC
Q 012095 447 SLTTLQAAVERIKKGLLTLRPG 468 (471)
Q Consensus 447 ~~e~i~~~~~~l~~~l~~~~~~ 468 (471)
+++++++++++|.+++.++..+
T Consensus 418 t~~ei~~~~~~l~~~l~~~~~~ 439 (442)
T TIGR00709 418 DQEECEEGISRFKQAVEEALAE 439 (442)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876443
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.7e-18 Score=167.44 Aligned_cols=355 Identities=14% Similarity=0.142 Sum_probs=231.6
Q ss_pred HHHHHHHhcCCCeEEcCCCCCCCC--C---hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEE
Q 012095 85 DQATALAQAGVSVIRLAAGEPDFD--T---PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQIL 159 (471)
Q Consensus 85 ~~~~~~~~~g~~~i~l~~g~~~~~--~---p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~ 159 (471)
++.+.+++.|.+...|...+-... + -..+.+++..++..+...|+.++...+|.+.+++++ ..+.++
T Consensus 26 ~r~~~l~~ag~n~f~l~~~~v~IDLlSDS~T~aMs~~q~a~~~vGDd~Yagd~s~~~LE~~vAe~l--------G~e~aV 97 (460)
T PRK13237 26 EREAAMKEAGYNTFLLRSEDVYIDLLTDSGTNAMSDRQWAGMMIGDEAYAGSRNFYHLEETVQEYY--------GFKHVV 97 (460)
T ss_pred HHHHHHHHcCCCcccCCcCcEEEECcccCCchhccHHHHHHHhhcchhhcCCCcHHHHHHHHHHHH--------CCCeEE
Confidence 444556677877777777662211 1 144455545555556678998889999999999997 335799
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCC-CChHHHHHHcCCEEEEecCC--------CCCCCcCCHHHHHhhhccC--
Q 012095 160 VSNGAKQSILQAVLAVCSPGDEVIIPAPFW-VSYPEMARIADATPVILPTR--------ISENFLLDPKVLESKLTEK-- 228 (471)
Q Consensus 160 it~G~~~al~~~~~~l~~~gd~Vlv~~p~y-~~~~~~~~~~G~~~~~v~~~--------~~~~~~ld~e~l~~~l~~~-- 228 (471)
.+++++.++.+++...++|||+| +..+| ......+...|+..+.+..+ ....+.+|++.|+++++++
T Consensus 98 ~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~ahI~~~Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~ 175 (460)
T PRK13237 98 PTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTRYHQELNGGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGA 175 (460)
T ss_pred EeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhHHHHHhCCcEEEeeecccccccccCCCCCCCcCHHHHHHHhccccC
Confidence 99999999998777778999975 44433 44444478888866555322 1235789999999999753
Q ss_pred --CcEEEEcCCCCCc-ccCCCHHHHHHHHHHHHhCCCeEEEEccCCCcc----cc---CCCCccccc----cCCCCCCce
Q 012095 229 --SRLLILCSPSNPT-GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI----IY---APATHTSFA----SLPGMWERT 294 (471)
Q Consensus 229 --~~~i~i~~p~NPt-G~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~----~~---~~~~~~~~~----~~~~~~~~~ 294 (471)
++++.+.+++|.. |.+.|.+++++|.++|++| |+.||+|.+.... +- .+....++. .+.. --.
T Consensus 176 ~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~-Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s--~aD 252 (460)
T PRK13237 176 ENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKH-GIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFS--YAD 252 (460)
T ss_pred CccCceEEEEecccCCCeeCCHHhHHHHHHHHHHc-CCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccC--cCc
Confidence 3456677788877 7999999999999999999 9999999987632 10 111112221 1111 123
Q ss_pred EEEecCCcccCccchhheeeEc-CHHHHHHHHHHHhcc----cC-CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 012095 295 LTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQF----TS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 368 (471)
Q Consensus 295 i~~~S~SK~~g~~G~R~G~v~~-~~~~i~~l~~~~~~~----~~-~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r 368 (471)
+.+.|++|.++.+ . -|+++. ++++.++++...-.+ ++ +.+.-...+++..|.+.. ..+++... -.+.
T Consensus 253 ~~t~S~~K~~~~~-~-GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~-~~~y~~~r----i~~~ 325 (460)
T PRK13237 253 GCTMSGKKDCLVN-I-GGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESV-QYEYIEHR----VGQV 325 (460)
T ss_pred EEEEeCCCCCCCC-C-ceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhc-hHHHHHHH----HHHH
Confidence 6777899998754 1 288776 567888887764322 11 222223333333344311 12333333 3455
Q ss_pred HHHHHHhcCCCCCeeeCCCcceEEeEecCCcc-CCcccCCCCCCCHHHHHHHHHHcCCEEEE-CCCC-CCC---------
Q 012095 369 DFLVKSFGELEGVKMSEPQGAFYLFIDFSTYY-GSEAEGFGKIENSESLCRYLLDKAQVALV-PGDA-FGD--------- 436 (471)
Q Consensus 369 ~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~-pg~~-f~~--------- 436 (471)
++|.+.|.+. |+.+..|.||.-++++..... +....++ ....++..|..+.||-.. -|+. ++.
T Consensus 326 ~~l~~~L~~~-Gvpv~~p~ggH~v~vda~~~lph~~~~~~----p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~ 400 (460)
T PRK13237 326 RYLGEKLLAA-GVPIVEPVGGHAVFLDARRFLPHLPQDQF----PAQALAAELYIESGVRSMERGIVSAGRDPKTGENHY 400 (460)
T ss_pred HHHHHHHHHC-CCceecCCCceEEEEEhHHhCCCCCcccC----hHHHHHHHHHHHhCcCeEeecceecccCCCCCccCC
Confidence 6777777776 999999999998888754321 1111222 678888888888898543 2332 111
Q ss_pred --CCcEEEEeec---CHHHHHHHHHHHHHHHHh
Q 012095 437 --DTCIRISYAA---SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 437 --~~~iRis~~~---~~e~i~~~~~~l~~~l~~ 464 (471)
-..+|+++.. |.+.++...++|..+.++
T Consensus 401 ~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~ 433 (460)
T PRK13237 401 PKLELVRLTIPRRVYTYAHMDVVADSVIKLYKH 433 (460)
T ss_pred CccceeeeccccccccHHHHHHHHHHHHHHHHh
Confidence 1479999987 889999999999888764
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-18 Score=174.69 Aligned_cols=214 Identities=14% Similarity=0.138 Sum_probs=151.8
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH----HHHHcCCEEEEecCC
Q 012095 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVILPTR 209 (471)
Q Consensus 134 ~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~G~~~~~v~~~ 209 (471)
..+|++.++++. | .+..++++++++++..++.++++|||+|+++.+.|..... .+...|++++.++.
T Consensus 65 ~~~le~~lA~l~----g----~~~al~~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~- 135 (427)
T PRK05994 65 NAVLEERVAALE----G----GTAALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADA- 135 (427)
T ss_pred HHHHHHHHHHHh----C----CCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECC-
Confidence 455666666664 3 2357788888999999999999999999999999986543 46678999998875
Q ss_pred CCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCC
Q 012095 210 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289 (471)
Q Consensus 210 ~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 289 (471)
.|++.+++++++++++|++++|+||||.+++ +++|.++|+++ ++++|+|++|.... ...++ .
T Consensus 136 ------~d~~~l~~ai~~~tklV~vesp~NptG~v~d---l~~I~~la~~~-gi~livD~a~a~~~----~~~pl-~--- 197 (427)
T PRK05994 136 ------DDPASFERAITPRTKAIFIESIANPGGTVTD---IAAIAEVAHRA-GLPLIVDNTLASPY----LIRPI-E--- 197 (427)
T ss_pred ------CCHHHHHHhcCcCCeEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCccccc----cCCcc-c---
Confidence 2889999999989999999999999999999 88999999999 99999999997421 11111 1
Q ss_pred CCCceEEEecCCcccCccchhheeeEcC-H------------------H-----HHHHH----------HHHHhcccCCC
Q 012095 290 MWERTLTVNGFSKAFAMTGWRLGYIAGP-K------------------H-----FVAAC----------NKIQSQFTSGA 335 (471)
Q Consensus 290 ~~~~~i~~~S~SK~~g~~G~R~G~v~~~-~------------------~-----~i~~l----------~~~~~~~~~~~ 335 (471)
.+-.+++.|++|.+|-+|-.+|.++.. . . +.+.+ .+.......+.
T Consensus 198 -~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 276 (427)
T PRK05994 198 -HGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAI 276 (427)
T ss_pred -cCCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCC
Confidence 244499999999997556556654431 1 0 22111 11122234445
Q ss_pred ChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCe
Q 012095 336 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 382 (471)
Q Consensus 336 ~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~ 382 (471)
+++..+.+..-| +.+....++..++...+.+.|++.|++.
T Consensus 277 ~~~~A~l~~~~l-------~tL~~r~~~~~~~a~~la~~L~~~p~v~ 316 (427)
T PRK05994 277 SPFNAFLILTGI-------ETLPLRMQRHSDNALAVAEWLKGHPKVS 316 (427)
T ss_pred CHHHHHHHHcCc-------ccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 555433333322 3356666677777888888888877653
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-18 Score=171.74 Aligned_cols=334 Identities=14% Similarity=0.134 Sum_probs=216.7
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.+||+..|. ..++. +|.+.+++.+++.+....+ .....++...+++++.+..+ .+.++++++++++..
T Consensus 34 dG~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~~~~~--~~~~~~~~~~la~~l~~~~~----~~~v~f~~SGseA~e 107 (395)
T PRK03715 34 NGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINPS--PAFYNEPMAKLAGLLTQHSC----FDKVFFANSGAEANE 107 (395)
T ss_pred CCCEEEECCcChhhccCCCCCHHHHHHHHHHHHhccccc--ccccCHHHHHHHHHHhhccC----CCEEEEeCCcHHHHH
Confidence 578899998864 33444 6889999999887533222 22346778888998875422 368999999999999
Q ss_pred HHHHHhc------CCC-CeEEEcCCCCCChHH-HHHHcCCEEE---EecCCCCCCC----cCCHHHHHhhhccCCcEEEE
Q 012095 170 QAVLAVC------SPG-DEVIIPAPFWVSYPE-MARIADATPV---ILPTRISENF----LLDPKVLESKLTEKSRLLIL 234 (471)
Q Consensus 170 ~~~~~l~------~~g-d~Vlv~~p~y~~~~~-~~~~~G~~~~---~v~~~~~~~~----~ld~e~l~~~l~~~~~~i~i 234 (471)
.+++... ++| +.|+..+.+|++... .+...|.... ..|.. .++ ..|++.+++.+.+++.+|++
T Consensus 108 ~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~--~~~~~~~~~d~~~l~~~l~~~~aavi~ 185 (395)
T PRK03715 108 GAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQV--PGFPKAELNDIASVEKLITDKTVAVML 185 (395)
T ss_pred HHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCC--CCceeeCCchHHHHHHHcCCCceEEEE
Confidence 9988774 134 568888888877653 3343343211 11111 111 13789999998777777777
Q ss_pred cCCCCCcccCC-CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCc-cccccCCCCCCceEEEecCCcccCccchhhe
Q 012095 235 CSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWERTLTVNGFSKAFAMTGWRLG 312 (471)
Q Consensus 235 ~~p~NPtG~~~-~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G 312 (471)
...++..|... +++.+++|.++|++| ++++|+||+|..+.-.|... .....+.. | +.+|+|.+| .|+.+|
T Consensus 186 Epv~~~gG~~~~~~~~l~~l~~l~~~~-~~llI~DEv~tG~GRtG~~~a~~~~gv~P--D----i~t~gK~lg-~G~p~~ 257 (395)
T PRK03715 186 EPVQGEGGVIPATREFMQQLRALTKQH-GLLLIVDEVQTGCGRTGTLFAYELSGIEP--D----IMTLGKGIG-GGVPLA 257 (395)
T ss_pred eCCcCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCCCcchhhHhhcCCCC--c----eeeehhhhh-CCcceE
Confidence 76677777654 689999999999999 99999999999753223211 01111211 2 467899998 789999
Q ss_pred eeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCC---CCCeeeCCCcc
Q 012095 313 YIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL---EGVKMSEPQGA 389 (471)
Q Consensus 313 ~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~---~g~~~~~p~~g 389 (471)
.+++++++.. +.......+++.++++.+++.+.|+.- + -+++.+..+++-+++.+.|+++ .++...... |
T Consensus 258 av~~~~~i~~-~~~~~~~~T~~g~pl~~aaala~L~~l---~--~~~l~~~~~~~g~~l~~~L~~l~~~~~i~~vrG~-G 330 (395)
T PRK03715 258 ALLAKAEVAV-FEAGDQGGTYNGNPLMTAVGVAVISQL---L--APGFLEGVRARGEYLKEKLLELSEERGLEGERGE-G 330 (395)
T ss_pred EEEEcccccc-ccCCCcCCCCCCCHHHHHHHHHHHHHH---H--hccHHHHHHHHHHHHHHHHHHHhhcCCcCeEEcc-e
Confidence 9999988853 221112345567888888888888741 1 1234555555555665555542 134333333 4
Q ss_pred eEEeEecCCccCCcccCCCCCCCHHHHHHHHHH--cCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012095 390 FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLD--KAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~--~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~ 465 (471)
..+-+.+.+. ....+.+.+.+ +.||.+.+.. .+.+|++... ++++|++++++|.++++++
T Consensus 331 lm~~i~l~~~------------~~~~~~~~~~~~~~~Gi~~~~~~----~~~lR~~p~l~~t~~ei~~~~~~l~~~l~~~ 394 (395)
T PRK03715 331 LLRALLLGKD------------IGPQIVEKARDMQPDGLLLNAPR----PNLLRFMPALNVTTEEIDQMIAMLRSVLDKL 394 (395)
T ss_pred eEEEEEecCc------------hHHHHHHHHHhccCCCEEEeecC----CCEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 4455666431 12333333221 1289886532 3679999886 9999999999999998764
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-18 Score=164.78 Aligned_cols=312 Identities=19% Similarity=0.182 Sum_probs=205.2
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCC
Q 012095 108 DTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187 (471)
Q Consensus 108 ~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p 187 (471)
.+.+++.+++.++-..+...|+.++-+.++.+.+++. +| . +.++++.++|++..+++.+.++||+.|++..-
T Consensus 11 g~~~~m~eam~~a~~~~~~~YG~D~~~~~~e~~~ae~----~g---~-~a~~Fv~sGT~aN~lal~~~~~~~~~vi~~~~ 82 (342)
T COG2008 11 GPTPEMREALAAANAVGDDVYGEDPTTNALEQRIAEL----FG---K-EAALFVPSGTQANQLALAAHCQPGESVICHET 82 (342)
T ss_pred CCCHHHHHHHHhccccCCCCCCCCHHHHHHHHHHHHH----hC---C-ceEEEecCccHHHHHHHHHhcCCCCeEEEecc
Confidence 4568899999887544567786665555555555555 45 2 78999999999999999999999999999988
Q ss_pred CCCChHH--HHHHcC-CEEEEecCCCCCCCcCCHHHHHhhhcc------CCcEEEEcCCCCCcccCCCHHHHHHHHHHHH
Q 012095 188 FWVSYPE--MARIAD-ATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVA 258 (471)
Q Consensus 188 ~y~~~~~--~~~~~G-~~~~~v~~~~~~~~~ld~e~l~~~l~~------~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~ 258 (471)
+|....+ .....+ +. .++..+..+..+++|++++.+.. .+..+++.+.+|-.|+++|.+++++|.++|+
T Consensus 83 aHi~~~E~Ga~~~~~~~~--~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k 160 (342)
T COG2008 83 AHIYTDECGAPEFFGGGQ--KLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCK 160 (342)
T ss_pred ccceecccCcHHHHcCCc--eeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHHH
Confidence 8876554 233333 33 33333445567999999998753 2445555555557899999999999999999
Q ss_pred hCCCeEEEEccC--CCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeE-cCHHHHHHHHHHHhcccCCC
Q 012095 259 KHPRLLVLSDEI--YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA-GPKHFVAACNKIQSQFTSGA 335 (471)
Q Consensus 259 ~~~~~~ii~De~--y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~-~~~~~i~~l~~~~~~~~~~~ 335 (471)
+| ++.|..|-+ +..+...+ ++...+.. ...++.-++||..+.++ |.++ ++.++++.+..++.......
T Consensus 161 ~~-~l~LHmDGAR~~nA~valg---~~~~~~~~--~~D~v~~~~tK~g~~~~---gAiv~gn~~~~~~a~~~rK~~Ggl~ 231 (342)
T COG2008 161 EH-GLPLHMDGARLANALVALG---VALKTIKS--YVDSVSFCLTKGGGAPV---GAIVFGNRDFAKRARRWRKRAGGLM 231 (342)
T ss_pred Hh-CCceeechHHHHHHHHHcC---CCHHHHHh--hCCEEEEecccCCccee---eeEEEcCHHHHHHHHHHHHHhcccH
Confidence 99 999999987 33333223 22222221 12255556899987665 7755 79999999887766555444
Q ss_pred ChHHH--HHHHHHHhccCCChHHHHHHHHHHHHH--HHHHHHHhcCCCCCeeeCC-CcceEEeEecCCccCCcccCCCCC
Q 012095 336 SSISQ--KAGVAALGLGYAGGEVVSKMVKAFRER--RDFLVKSFGELEGVKMSEP-QGAFYLFIDFSTYYGSEAEGFGKI 410 (471)
Q Consensus 336 ~~~~q--~aa~~~L~~~~~~~~~~~~~~~~~~~~--r~~l~~~L~~~~g~~~~~p-~~g~~~~~~~~~~~~~~~~~~~~~ 410 (471)
+.... .....+|++ .-|.. .....+ ...|.+.|.+.+|+++..| +.++ +|+++++..
T Consensus 232 ~k~r~laA~~~~~l~~----~~~~~---~~~Han~mA~~La~~~~~~~G~~~~~~~~tN~-vf~~l~~~~---------- 293 (342)
T COG2008 232 RKARFLAAQGLYALED----DVWRL---AADHANAMAARLAEGLEAKPGVKLAFPVETNM-VFVRLPESA---------- 293 (342)
T ss_pred hhhhHHHHHHHHHHhc----cHHHH---HHHHHHHHHHHHHHhhhhcCCceeccCCcccE-EEEECChHH----------
Confidence 33333 333444543 22322 222333 7778899988889988765 6565 888887531
Q ss_pred CCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012095 411 ENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGL 462 (471)
Q Consensus 411 ~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l 462 (471)
.+...+...+ ...|+...+++ ..+|+..+. +++++++++..+++++
T Consensus 294 i~~l~~~~~~-~~~~~~~~~~~-----~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 294 IEALRLAGAL-FYRGVLIGAHG-----EIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred HHHHHhhchh-heeeeeccCCC-----ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 0122222222 23355554432 358887765 8899999999888764
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.7e-18 Score=172.20 Aligned_cols=356 Identities=15% Similarity=0.144 Sum_probs=213.7
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+.+||+..|. ..++. ++.+.+++.+++.+.. .+.+.....+....+++.+.+..+.. ..+.++++++++++.
T Consensus 39 ~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~~~-~~~~~~~~~~~~~~lae~L~~~~p~~-~~~~v~f~~SGseA~ 116 (445)
T PRK08593 39 VDGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFI-HYTPAYMYHEPLVRLAKKLCELAPGD-FEKRVTFGLSGSDAN 116 (445)
T ss_pred CCCCEEEECCccHHhhcCCCCCHHHHHHHHHHHHhcc-CccccccCCHHHHHHHHHHHHhCCCC-CCCEEEECCchHHHH
Confidence 3688899998875 34444 7899999999987632 22121123455566666666544311 125899999999999
Q ss_pred HHHHHHhc-CCC-CeEEEcCCCCCChHHHHH-HcCC-------------EEEEecCCCCCC--Cc-CC-------HHHHH
Q 012095 169 LQAVLAVC-SPG-DEVIIPAPFWVSYPEMAR-IADA-------------TPVILPTRISEN--FL-LD-------PKVLE 222 (471)
Q Consensus 169 ~~~~~~l~-~~g-d~Vlv~~p~y~~~~~~~~-~~G~-------------~~~~v~~~~~~~--~~-ld-------~e~l~ 222 (471)
..+++... -.| ..|+..+.+|++....+. ..+. .++.+|...... +. .+ ++.++
T Consensus 117 e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 196 (445)
T PRK08593 117 DGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLK 196 (445)
T ss_pred HHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHH
Confidence 98888642 133 568888888887654332 2221 122333221100 00 01 23444
Q ss_pred hhhc-----cCCcEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEE
Q 012095 223 SKLT-----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLT 296 (471)
Q Consensus 223 ~~l~-----~~~~~i~i~~p~NPtG~~-~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~ 296 (471)
+.+. +++.+|++...++..|.. .+++.+++|.++|++| ++++|.||+|..+-..|.. .....+.-..|
T Consensus 197 ~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~-g~llI~DEv~tg~GrtG~~-~a~~~~gv~pD---- 270 (445)
T PRK08593 197 EMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREH-GILFAVDDIQQGLGRTGKW-SSISHFNITPD---- 270 (445)
T ss_pred HHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcCchH-HHHHhcCCCCC----
Confidence 4442 345566666567667875 7899999999999999 9999999999876333321 11111111112
Q ss_pred EecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhc
Q 012095 297 VNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 376 (471)
Q Consensus 297 ~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~ 376 (471)
+-+|+|.++ .|+++|++++++++++.+......++++.++++.+++.+.|+.-.. ++.+++..+.-+..++.+.+..+
T Consensus 271 i~t~gK~l~-~G~p~gav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~-~~l~~~~~~~g~~l~~~L~~l~~ 348 (445)
T PRK08593 271 LMSFGKSLA-GGMPMSAIVGRKEIMESLEAPAHLFTTGANPVSCAAALATIDMIED-ESLLQRSAEKGEYARKRFDQWVS 348 (445)
T ss_pred Eeeeccccc-CCcccEEEEEcHHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHh
Confidence 447899998 8899999999999998875433445777899999988888874211 12233333322333333333222
Q ss_pred CCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHH
Q 012095 377 ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAA 454 (471)
Q Consensus 377 ~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~ 454 (471)
+.+-+.-+... |.++.+.+....... .........+...|+++ ||++.+.. .+.+|++... ++++++++
T Consensus 349 ~~~~v~~vrG~-Gl~~gi~l~~~~~~~---~~~~~~~~~~~~~~~~~-Gv~~~~~~----~~~lr~~p~l~~t~~~id~~ 419 (445)
T PRK08593 349 KYNFVGDVRGY-GLSIGIDIVSDKKLK---TRDNEAALKICNYCFEH-GVVIIAVA----GNVLRFQPPLVITYEQLDTA 419 (445)
T ss_pred cCCcEEEEecc-ceEEEEEEecCCCcC---CCcHHHHHHHHHHHHHC-CeEEeccC----CCEEEEECCCccCHHHHHHH
Confidence 33322222333 333444443210000 00000235677777765 99987632 3578988775 99999999
Q ss_pred HHHHHHHHHhhC
Q 012095 455 VERIKKGLLTLR 466 (471)
Q Consensus 455 ~~~l~~~l~~~~ 466 (471)
+++|.++++++.
T Consensus 420 ~~~l~~~l~~~~ 431 (445)
T PRK08593 420 LNTIEQAFTALE 431 (445)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-18 Score=174.68 Aligned_cols=337 Identities=12% Similarity=0.081 Sum_probs=215.4
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCC-CCCC---CCC---CHHHHHHHHHHHHHHhCCCCCCCcEEEe---CCh
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFT-RYTP---NAG---TLELRSAICHKLKEENGLSYTPDQILVS---NGA 164 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~-~Y~~---~~G---~~~lr~~ia~~~~~~~g~~~~~~~i~it---~G~ 164 (471)
+..|+|-..++-. ++.+++++...+.+... +|+. ..| ...+.+...+.+.+.+|. +++++.++ +|+
T Consensus 34 ~~~l~l~~sen~~--s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a--~~~~~~~~~~~~sg 109 (452)
T PTZ00094 34 IEGLELIASENFT--SRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGL--DPEEWGVNVQPYSG 109 (452)
T ss_pred HcCeeEecccccC--CHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCC--CcccceeecCCCch
Confidence 4578888888764 56788888777754221 2211 122 222322233455555664 55667666 788
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHH----------cCCEEEEecCCCCCCCcCCHHHHHhhhcc-CCcEEE
Q 012095 165 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI----------ADATPVILPTRISENFLLDPKVLESKLTE-KSRLLI 233 (471)
Q Consensus 165 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~----------~G~~~~~v~~~~~~~~~ld~e~l~~~l~~-~~~~i~ 233 (471)
+++...++.+++++||.|++.+..|.++...... .+.+++.++++.+ ..+|+++|++++++ ++++++
T Consensus 110 t~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~--g~id~~~L~~~l~~~~~~lvi 187 (452)
T PTZ00094 110 SPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEK--GLIDYDKLEELAKAFRPKLII 187 (452)
T ss_pred HHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccCCC--CCcCHHHHHHHHHHhCCCEEE
Confidence 8999988999999999999987777665432211 1133445555543 56899999999954 677766
Q ss_pred EcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhhee
Q 012095 234 LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 313 (471)
Q Consensus 234 i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~ 313 (471)
+. ++.+|...+ +++|.++|+++ |+++++|+++.......... ..+. .+..+++.|++|+++ |.+.|+
T Consensus 188 ~~--~s~~g~~~d---i~~I~~i~~~~-ga~l~vDaaq~~G~i~~~~~----~~~~-~~~D~l~~S~hK~l~--GP~Gg~ 254 (452)
T PTZ00094 188 AG--ASAYPRDID---YKRFREICDSV-GAYLMADIAHTSGLVAAGVL----PSPF-PYADVVTTTTHKSLR--GPRSGL 254 (452)
T ss_pred Ee--CCCCCCccC---HHHHHHHHHHc-CCEEEEeccchhccccCCCC----CCCC-CCCcEEEcCCccCCC--CCCceE
Confidence 53 334999999 88889999999 99999999998654432111 1111 134488999999872 333488
Q ss_pred eEcCHHHHHHHHHHHh-----cccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCc
Q 012095 314 IAGPKHFVAACNKIQS-----QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG 388 (471)
Q Consensus 314 v~~~~~~i~~l~~~~~-----~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~ 388 (471)
+++++++.+.+..... .+..+++.....++.++++.. .....++..++..++++++.+.|.+. |+.+..+..
T Consensus 255 l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~--~~~~~~~~~~~i~~l~~~l~~~L~~~-g~~v~~~~~ 331 (452)
T PTZ00094 255 IFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEV--QSPEWKEYAKQVLKNAKALAAALEKR-GYDLVTGGT 331 (452)
T ss_pred EEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHH--hChhHHHHHHHHHHHHHHHHHHHHhC-CcEEecCCC
Confidence 8887766554432211 112245555555666666641 12345667788889999999999886 887754321
Q ss_pred -ceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEE-CCCCCC----CCCcEEEEeec--C----HHHHHHHHH
Q 012095 389 -AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV-PGDAFG----DDTCIRISYAA--S----LTTLQAAVE 456 (471)
Q Consensus 389 -g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~-pg~~f~----~~~~iRis~~~--~----~e~i~~~~~ 456 (471)
....++.+... + .+...+...| ++.||.+. +|.... .+++||+++.. + +++++++++
T Consensus 332 ~~~~~~v~~~~~-~---------~~~~~~~~~L-~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~ 400 (452)
T PTZ00094 332 DNHLVLVDLRPF-G---------ITGSKMEKLL-DAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVAD 400 (452)
T ss_pred CCceEeecCCcC-C---------CCHHHHHHHH-HHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHH
Confidence 22244444321 0 1455666654 66799994 443332 24789999865 3 899999999
Q ss_pred HHHHHHHh
Q 012095 457 RIKKGLLT 464 (471)
Q Consensus 457 ~l~~~l~~ 464 (471)
.|.++++.
T Consensus 401 ~l~~~~~~ 408 (452)
T PTZ00094 401 FLDRAVKL 408 (452)
T ss_pred HHHHHHHH
Confidence 99998874
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.3e-18 Score=172.80 Aligned_cols=354 Identities=14% Similarity=0.129 Sum_probs=219.6
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.+||+..|. ..++. ++.+.+++.+++.+... +.......+....+++.+.+..+. ..+.++++++++++..
T Consensus 50 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~--~~~~v~f~~sGseAve 126 (460)
T PRK06541 50 RGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAF-FPLWSYAHPPAIELAERLAALAPG--DLNRVFFTTGGSEAVE 126 (460)
T ss_pred CCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhCcC-ccccccCCHHHHHHHHHHHHhCCC--CcCEEEEcCCcHHHHH
Confidence 688899998885 33444 78899999999876321 111122345556667666654331 2368999999999999
Q ss_pred HHHHHhcC-------C-CCeEEEcCCCCCChHHHHHHc-CC------------EEEEecCCCCC---CCcCC--------
Q 012095 170 QAVLAVCS-------P-GDEVIIPAPFWVSYPEMARIA-DA------------TPVILPTRISE---NFLLD-------- 217 (471)
Q Consensus 170 ~~~~~l~~-------~-gd~Vlv~~p~y~~~~~~~~~~-G~------------~~~~v~~~~~~---~~~ld-------- 217 (471)
.+++.... + ...|+...-+|++....+... |. .+..+|..... .|.-+
T Consensus 127 ~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (460)
T PRK06541 127 SAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWA 206 (460)
T ss_pred HHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHH
Confidence 88886431 2 367888888888765433221 11 11223221100 01112
Q ss_pred HHHHHhhhc---cCCcEEEEcCC-CCCcccCC-CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCC
Q 012095 218 PKVLESKLT---EKSRLLILCSP-SNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292 (471)
Q Consensus 218 ~e~l~~~l~---~~~~~i~i~~p-~NPtG~~~-~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 292 (471)
++.+++.+. ++..+.+|..| ++++|.+. +++.+++|.++|++| |+++|.||+|..+--.|.. .......-..|
T Consensus 207 ~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~-g~llI~DEV~tGfGR~G~~-~a~~~~gv~PD 284 (460)
T PRK06541 207 ADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRY-DVLLVSDEVICAFGRLGEM-FGCERFGYVPD 284 (460)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcCchh-hhhhhcCCCCC
Confidence 356777764 23445566666 88999865 588999999999999 9999999999765212211 01111111112
Q ss_pred ceEEEecCCcccCccch-hheeeEcCHHHHHHHHHHH----hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Q 012095 293 RTLTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNKIQ----SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367 (471)
Q Consensus 293 ~~i~~~S~SK~~g~~G~-R~G~v~~~~~~i~~l~~~~----~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~ 367 (471)
+ -+|||.++ .|+ ++|++++++++++.+.... ...+++.++++.+++.+.|+.- .-+.+.+..+++
T Consensus 285 --i--vt~gK~l~-~G~~pigav~~~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l-----~~~~~~~~~~~~ 354 (460)
T PRK06541 285 --I--ITCAKGIT-SGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIF-----EREGLLDHVRDN 354 (460)
T ss_pred --E--EEeccccc-CCccceeEEEEcHHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHH-----HhccHHHHHHHH
Confidence 3 35899998 897 9999999999998875421 2236667888888888887641 112455667777
Q ss_pred HHHHHHHhcCCCCC---eeeCCCcceEEeEecCCccCCcccCCCCCC----CHHHHHHHHHHcCCEEEECCCCCCCCCcE
Q 012095 368 RDFLVKSFGELEGV---KMSEPQGAFYLFIDFSTYYGSEAEGFGKIE----NSESLCRYLLDKAQVALVPGDAFGDDTCI 440 (471)
Q Consensus 368 r~~l~~~L~~~~g~---~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~Ll~~~gV~v~pg~~f~~~~~i 440 (471)
.+++.+.|+++... ......|.| +-+.+.+.... ...+.... ....+.+.|+++ ||++.+.. . ..+.+
T Consensus 355 g~~l~~~L~~l~~~~~v~~vrg~Gl~-~~ie~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~-~-g~~~l 429 (460)
T PRK06541 355 EPAFRATLEKLLDLPIVGDVRGDGYF-YGIELVKDKAT-KETFTDDESERLLRGFLSPALFEA-GLYCRADD-R-GDPVV 429 (460)
T ss_pred HHHHHHHHHHhhcCCCeEEEEecceE-EEEEEecCccc-ccCCcchhhhhhHHHHHHHHHHhC-CeEEEecC-C-CCCEE
Confidence 77777777765222 223345444 44454321000 00000000 012566777765 99998731 1 13679
Q ss_pred EEEee--cCHHHHHHHHHHHHHHHHhhC
Q 012095 441 RISYA--ASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 441 Ris~~--~~~e~i~~~~~~l~~~l~~~~ 466 (471)
||+.. .++++|++++++|.++++++.
T Consensus 430 rl~Ppl~~t~~~id~~~~~l~~~l~~~~ 457 (460)
T PRK06541 430 QLAPPLISGQEEFDEIEQILRSVLTEAW 457 (460)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99988 499999999999999997643
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.8e-18 Score=171.40 Aligned_cols=156 Identities=13% Similarity=0.174 Sum_probs=124.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEecC
Q 012095 133 GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPT 208 (471)
Q Consensus 133 G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~G~~~~~v~~ 208 (471)
-..+|++.++++. | .+..++++++++|+..++.+++++||+|+++...|......+ ...|++++.++.
T Consensus 65 ~~~~le~~lA~l~----g----~~~av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~ 136 (433)
T PRK08134 65 TVAVLEERVAALE----G----GVGAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKP 136 (433)
T ss_pred HHHHHHHHHHHHh----C----CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECC
Confidence 3567777777775 3 234788999999999999999999999999999998765543 447999999985
Q ss_pred CCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCC
Q 012095 209 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 288 (471)
Q Consensus 209 ~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 288 (471)
+ |+++++++++++||+|++.+|+||+|.+.+ +++|+++|+++ ++++|+|.++..... ..++ .
T Consensus 137 ~-------d~~~l~~~i~~~TklV~~e~~~np~g~v~D---i~~I~~la~~~-gi~livD~t~a~~~~----~~pl-~-- 198 (433)
T PRK08134 137 G-------DIDGWRAAIRPNTRLLFGETLGNPGLEVLD---IPTVAAIAHEA-GVPLLVDSTFTTPYL----LRPF-E-- 198 (433)
T ss_pred C-------CHHHHHHhcCCCCeEEEEECCCcccCcccC---HHHHHHHHHHc-CCEEEEECCCccccc----CCch-h--
Confidence 3 899999999999999999999999999999 99999999999 999999999864211 1111 2
Q ss_pred CCCCceEEEecCCcccCccchhheeeEc
Q 012095 289 GMWERTLTVNGFSKAFAMTGWRLGYIAG 316 (471)
Q Consensus 289 ~~~~~~i~~~S~SK~~g~~G~R~G~v~~ 316 (471)
.+-.+++.|.+|.++-+|-.+|.++.
T Consensus 199 --~GaD~vv~S~tK~l~g~g~~~gG~v~ 224 (433)
T PRK08134 199 --HGADLVYHSATKFLGGHGTAIGGVLV 224 (433)
T ss_pred --cCCCEEEeccccccCCCCCceEEEEE
Confidence 24459999999999766766666543
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-18 Score=155.34 Aligned_cols=325 Identities=17% Similarity=0.255 Sum_probs=222.7
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhc
Q 012095 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC 176 (471)
Q Consensus 97 ~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~ 176 (471)
.+||-+.--.- |..++.+++.++.. +..-|+.++-..+|.+.+|+.++ +..-+++++|+...+..++--+-
T Consensus 23 ~vDLRSDTvT~-PTdeMr~am~eA~v-gDdVyGeD~tt~rLE~~vA~l~G-------KEAgLFv~SGTmgNllaIm~Hc~ 93 (384)
T KOG1368|consen 23 SVDLRSDTVTV-PTDEMRRAMAEASV-GDDVYGEDPTTNRLEQRVAELFG-------KEAGLFVPSGTMGNLLAIMVHCH 93 (384)
T ss_pred ccccccccccC-ChHHHHHHHhhccc-CcccccCCccHHHHHHHHHHHhC-------ccceeeecccccccHHHHHHHhc
Confidence 34554443222 24678888887653 34567777778899999999874 34457778887776665444445
Q ss_pred CCCCeEEEcCCCCCChHH---HHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc--------CCcEEEEcCCCCCcc-cC
Q 012095 177 SPGDEVIIPAPFWVSYPE---MARIADATPVILPTRISENFLLDPKVLESKLTE--------KSRLLILCSPSNPTG-SV 244 (471)
Q Consensus 177 ~~gd~Vlv~~p~y~~~~~---~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~--------~~~~i~i~~p~NPtG-~~ 244 (471)
++|.+|++.+-++.-.++ +..+.|+.++.+... ++..+|++++++++.. .+++|++.|.+|-+| .+
T Consensus 94 ~rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~e--~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~v 171 (384)
T KOG1368|consen 94 QRGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVKNE--NDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKV 171 (384)
T ss_pred CCCceEEeccchheeehhccChhhhccceeEeeeeC--CCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceE
Confidence 699999999988865443 466778888777654 4455899999999862 478999988876555 99
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEccCCC--ccccCCCCccccccCCCCCCceEEEecCCcccCccchhhee-eEcCHHHH
Q 012095 245 YPKNLLDEIARIVAKHPRLLVLSDEIYE--HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGPKHFV 321 (471)
Q Consensus 245 ~~~~~l~~i~~l~~~~~~~~ii~De~y~--~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~-v~~~~~~i 321 (471)
+|.+++.++.++|++| ++.+.+|.+-- .-+-.+ .++..+....|.+-++ |||.+|.| +|- +++++++|
T Consensus 172 lPle~~~~v~~lak~~-glkLH~DGARi~NAavasg---V~vk~i~~~fDSVsiC--LSKglgAP---VGSViVG~k~FI 242 (384)
T KOG1368|consen 172 LPLEELDRVKALAKRH-GLKLHMDGARIFNAAVASG---VPVKKICSAFDSVSIC--LSKGLGAP---VGSVIVGSKDFI 242 (384)
T ss_pred eeHHHHHHHHHHHhcc-CCeeecchhhhhhHHHHcC---CCHHHHHHhhhhhhhh--hhccCCCC---cccEEEccHHHH
Confidence 9999999999999999 99999997732 111111 2222222222333233 88998744 676 55899999
Q ss_pred HHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC--CcceEEeEecCCc
Q 012095 322 AACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP--QGAFYLFIDFSTY 399 (471)
Q Consensus 322 ~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p--~~g~~~~~~~~~~ 399 (471)
++.+..+.....+.-..+..++++.... ++-+. ....-.++...+.+.++..+++++..| +.+| +.+.+-+.
T Consensus 243 ~kA~~~RKalGGGmRQsGvLaaaaLval----~~~~~-~L~~dHk~A~~lAe~~~~~~~i~v~v~a~etNi-v~~~l~q~ 316 (384)
T KOG1368|consen 243 DKARHFRKALGGGMRQSGVLAAAALVAL----DENVP-LLRADHKRAKELAEYINTPEEIRVEVPAVETNI-VNMVLCQA 316 (384)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHh----hcchH-HHHHHHHHHHHHHHHhccccceeeecchhhcce-eeeecccc
Confidence 9998888777777766666655555543 12222 334445566667778877755766544 4454 55444321
Q ss_pred cCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012095 400 YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGL 462 (471)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l 462 (471)
..+.+++++.+.+ +||.+.+|..+ .+|+.+.. +.++++..+..+.+.+
T Consensus 317 ----------~~~~~~l~~~~~k-~gi~lm~~~s~----r~Rivlh~Qvt~~~ve~~~~~~~k~~ 366 (384)
T KOG1368|consen 317 ----------RLTAEELCKFLEK-NGILLMGGASR----RIRIVLHHQVTDEDVEYVKSVLSKKF 366 (384)
T ss_pred ----------cCCHHHHHHHHHH-CCeEEeecccc----ceEEEEEEecCHHHHHHHHHHHHHHH
Confidence 1278899998754 59999998754 48999997 8899999999995443
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-17 Score=168.31 Aligned_cols=214 Identities=11% Similarity=0.102 Sum_probs=150.2
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH----HHHcCCEEEEecCC
Q 012095 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTR 209 (471)
Q Consensus 134 ~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~G~~~~~v~~~ 209 (471)
...|++.++++. | .+..+++++++.++..++.+++++||+|+++...|...... +...|++++.++ +
T Consensus 71 ~~~Le~~lA~l~----g----~~~av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-d 141 (436)
T PRK07812 71 QDVVEQRIAALE----G----GVAALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVE-D 141 (436)
T ss_pred HHHHHHHHHHHh----C----CCeEEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEEC-C
Confidence 345666666654 4 24567777888899999999999999999999888776543 344788888875 2
Q ss_pred CCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCC
Q 012095 210 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289 (471)
Q Consensus 210 ~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 289 (471)
. .|++.+++++++++++|++.+|+||+|.+.+ +++|.++|+++ ++++|+|+++..... ..+ +
T Consensus 142 ~-----~d~e~l~~ai~~~tklV~ie~~sNp~G~v~D---l~~I~~la~~~-gi~liVD~t~a~~~~----~~p---l-- 203 (436)
T PRK07812 142 P-----DDLDAWRAAVRPNTKAFFAETISNPQIDVLD---IPGVAEVAHEA-GVPLIVDNTIATPYL----IRP---L-- 203 (436)
T ss_pred C-----CCHHHHHHhCCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCccccc----CCc---h--
Confidence 1 2899999999999999999999999999999 89999999999 999999998864111 111 1
Q ss_pred CCCceEEEecCCcccCccchhheeeEcC-HH------------------------------HHHHHH-HHHhcccCCCCh
Q 012095 290 MWERTLTVNGFSKAFAMTGWRLGYIAGP-KH------------------------------FVAACN-KIQSQFTSGASS 337 (471)
Q Consensus 290 ~~~~~i~~~S~SK~~g~~G~R~G~v~~~-~~------------------------------~i~~l~-~~~~~~~~~~~~ 337 (471)
..+-.+++.|++|.+|-.|--+|+++.. .. ++.++. ......+.++++
T Consensus 204 ~~GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p 283 (436)
T PRK07812 204 EHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLGSAISP 283 (436)
T ss_pred hcCCCEEEEecccccCCCCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHHHHHhcCCCCCH
Confidence 1234488899999997666556665542 11 111111 223344555666
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 012095 338 ISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 381 (471)
Q Consensus 338 ~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~ 381 (471)
+..+.+..-| +-+....++..++...+.+.|++.|++
T Consensus 284 ~~a~l~~rgl-------~tL~~R~~~~~~nA~~la~~L~~~p~v 320 (436)
T PRK07812 284 FNAFLIAQGL-------ETLSLRIERHVANAQRVAEFLEARDEV 320 (436)
T ss_pred HHHHHHhcCc-------CcHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 6543333222 335666677778888889999988765
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-17 Score=166.05 Aligned_cols=213 Identities=19% Similarity=0.234 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHH----HcCCEEEEecCCC
Q 012095 135 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IADATPVILPTRI 210 (471)
Q Consensus 135 ~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~----~~G~~~~~v~~~~ 210 (471)
..|.+.|++. .| .+.+++++++..|+..++.+++++||.|+++...|.+....++ ..|.++.+++.
T Consensus 58 ~~le~~la~L----e~----g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~-- 127 (386)
T PF01053_consen 58 RALEQRLAAL----EG----GEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDP-- 127 (386)
T ss_dssp HHHHHHHHHH----HT-----SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEEST--
T ss_pred HHHHHHHHHh----hc----ccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcEEEEeCc--
Confidence 3455555554 33 3689999999999999999999999999999999988776554 47999988864
Q ss_pred CCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC-eEEEEccCCCccccCCCCccccccCCC
Q 012095 211 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR-LLVLSDEIYEHIIYAPATHTSFASLPG 289 (471)
Q Consensus 211 ~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~-~~ii~De~y~~~~~~~~~~~~~~~~~~ 289 (471)
-|++++++++++++++||+.+|.||+..+.+ +++|+++|+++ + +++++|+.+..... .....
T Consensus 128 -----~d~~~l~~~l~~~t~~v~~EspsNP~l~v~D---l~~i~~~a~~~-g~~~~vVDnT~atp~~-----~~pL~--- 190 (386)
T PF01053_consen 128 -----TDLEALEAALRPNTKLVFLESPSNPTLEVPD---LEAIAKLAKEH-GDILVVVDNTFATPYN-----QNPLE--- 190 (386)
T ss_dssp -----TSHHHHHHHHCTTEEEEEEESSBTTTTB------HHHHHHHHHHT-TT-EEEEECTTTHTTT-----C-GGG---
T ss_pred -----hhHHHHHhhccccceEEEEEcCCCccccccc---HHHHHHHHHHh-CCceEEeeccccceee-----eccCc---
Confidence 2899999999999999999999999999999 99999999999 8 99999999974211 11112
Q ss_pred CCCceEEEecCCcccC-ccchhheeeEcC--HHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 012095 290 MWERTLTVNGFSKAFA-MTGWRLGYIAGP--KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366 (471)
Q Consensus 290 ~~~~~i~~~S~SK~~g-~~G~R~G~v~~~--~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~ 366 (471)
.+-.|++.|.+|.++ -...=.|.++++ +++.+.++........++++.....+..-|+. +..+.++..+
T Consensus 191 -~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~T-------l~~R~~~~~~ 262 (386)
T PF01053_consen 191 -LGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLRGLRT-------LPLRMERQNE 262 (386)
T ss_dssp -GT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTT-------HHHHHHHHHH
T ss_pred -CCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhcCCCc-------HHHHHHHHHH
Confidence 234599999999984 222335777765 47888888877777767777766555554443 5556667777
Q ss_pred HHHHHHHHhcCCCCCe
Q 012095 367 RRDFLVKSFGELEGVK 382 (471)
Q Consensus 367 ~r~~l~~~L~~~~g~~ 382 (471)
+...+.+.|++.|.++
T Consensus 263 nA~~lA~~L~~hp~V~ 278 (386)
T PF01053_consen 263 NAEALAEFLEEHPKVK 278 (386)
T ss_dssp HHHHHHHHHHTSTTEE
T ss_pred HHHHHHHHHHhCCCCC
Confidence 8888999999887664
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-17 Score=167.88 Aligned_cols=338 Identities=15% Similarity=0.136 Sum_probs=209.5
Q ss_pred cCCCeEEcCCC--CCCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAG--EPDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g--~~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.++|+..| ...++. +|.+.+|+.+++.+..+. ......+.+..+++.+.+..+. ..+.++++++++++..
T Consensus 73 dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~~~--~~~~~~~~~~~lAe~L~~~~p~--~~~~v~f~~SGsEA~e 148 (442)
T TIGR03372 73 QGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLH--SQELLDPLRALLAKTLAALTPG--KLKYSFFCNSGTESVE 148 (442)
T ss_pred CCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhCCCc--ccccCCHHHHHHHHHHHHhCCC--CcCEEEEeCCchHHHH
Confidence 57889999888 455555 788999999988763221 1112245556677766654432 2268999999999999
Q ss_pred HHHHHhcC----CC-CeEEEcCCCCCChHHHHHHcCCEEE----EecCCCCC---CCcCCHHHHHhhhc------cCCcE
Q 012095 170 QAVLAVCS----PG-DEVIIPAPFWVSYPEMARIADATPV----ILPTRISE---NFLLDPKVLESKLT------EKSRL 231 (471)
Q Consensus 170 ~~~~~l~~----~g-d~Vlv~~p~y~~~~~~~~~~G~~~~----~v~~~~~~---~~~ld~e~l~~~l~------~~~~~ 231 (471)
.+++.... .| ..|+..+.+|++....+.....+.. +.|+.+.- .| .|.+.+++.+. ++..+
T Consensus 149 ~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~-~d~~~~~~~l~~~~~~~~~vAa 227 (442)
T TIGR03372 149 AALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAF-GDIEAMLKALNECKKTGDDVAA 227 (442)
T ss_pred HHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCC-CCHHHHHHHHHHHhcCCCcEEE
Confidence 88886431 24 5788889888877644433322110 11111100 01 26777777663 23445
Q ss_pred EEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccc-h
Q 012095 232 LILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-W 309 (471)
Q Consensus 232 i~i~~p~NPtG~~-~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~ 309 (471)
|++...+...|.. .+++.++++.++|++| ++++|.||++..+--.|. ...+....-..| +-+|+|.+| .| +
T Consensus 228 vIvEpv~g~gG~~~p~~~yl~~l~~lc~~~-g~llI~DEV~tG~GRtG~-~~a~e~~gv~PD----ivt~gK~lg-~G~~ 300 (442)
T TIGR03372 228 IILEPIQGEGGVILPPEGYLPAVRALCDEF-GALLILDEVQTGMGRTGK-MFACEHEGVQPD----ILCLAKALG-GGVM 300 (442)
T ss_pred EEEeCccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEeecccCCCcccc-chhhhhcCCCCC----eeeehhhhc-CCcc
Confidence 5554445556764 5788999999999999 999999999976522222 111111111112 334899998 78 6
Q ss_pred hheeeEcCHHHHHHHHH--HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC----CC-CCe
Q 012095 310 RLGYIAGPKHFVAACNK--IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE----LE-GVK 382 (471)
Q Consensus 310 R~G~v~~~~~~i~~l~~--~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~----~~-g~~ 382 (471)
.+|.+++++++.+.+.. .....+++.++++.+++.+.|+.-.. ++ +.+..++.-+++.+.|++ .| .+.
T Consensus 301 Pigavv~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~-~~----l~~~~~~~G~~l~~~L~~l~~~~~~~i~ 375 (442)
T TIGR03372 301 PIGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLE-KN----LPAQAAIKGDFLLDGFQQLAAEYPDLII 375 (442)
T ss_pred cceEEEecHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHh-cc----HHHHHHHHHHHHHHHHHHHHHhCCCceE
Confidence 99999999999888742 12335666789999999888874110 11 222333333334333333 33 222
Q ss_pred eeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHH
Q 012095 383 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKK 460 (471)
Q Consensus 383 ~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~ 460 (471)
-+.. -|.++.+.+.+. .....+++.|+++ ||++.+... ..+.+||.... +++++++++++|.+
T Consensus 376 ~vRG-~Gl~~giel~~~-----------~~~~~i~~~l~~~-Gvl~~~~~~--~~~~lr~~Ppl~~t~~~id~~~~~l~~ 440 (442)
T TIGR03372 376 EARG-KGLLMAIEFRDN-----------EIGYAFAKELFQQ-NILVAGTLN--NAKSIRIEPPLTITIEQCALVIKAAKD 440 (442)
T ss_pred EEec-ceEEEEEEeCCh-----------HHHHHHHHHHHHC-CcEEeecCC--CCCEEEEECCcccCHHHHHHHHHHHHH
Confidence 2223 355566666432 1346788888875 999875321 13678988775 99999999999987
Q ss_pred HH
Q 012095 461 GL 462 (471)
Q Consensus 461 ~l 462 (471)
++
T Consensus 441 ~~ 442 (442)
T TIGR03372 441 AL 442 (442)
T ss_pred hC
Confidence 63
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-17 Score=163.31 Aligned_cols=315 Identities=13% Similarity=0.141 Sum_probs=218.5
Q ss_pred ChHHHHHHHHHHHHc----CCCCCCCCCCCH---HHHHHHHHHHHHHhCCCCCCCcEEEeCC-hHHHHHHHHHHhcCCCC
Q 012095 109 TPVLIAEAGINAIRE----GFTRYTPNAGTL---ELRSAICHKLKEENGLSYTPDQILVSNG-AKQSILQAVLAVCSPGD 180 (471)
Q Consensus 109 ~p~~v~~a~~~~~~~----~~~~Y~~~~G~~---~lr~~ia~~~~~~~g~~~~~~~i~it~G-~~~al~~~~~~l~~~gd 180 (471)
.|..+++++.+.+.+ +...|....-.+ ++-+.+.+.+++.++.+ +..+|++++| +|++++.++..++.+||
T Consensus 3 ~p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~-~~~~v~~~~gsgT~a~ea~~~nl~~~~~ 81 (349)
T TIGR01364 3 LPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIP-DNYEVLFLQGGATGQFAAVPLNLLAEGK 81 (349)
T ss_pred CCHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCC-CCceEEEEcCCchHHHHHHHHhcCCCCC
Confidence 478899999888763 223343333344 66666777777777742 3457888877 99999999999999999
Q ss_pred eEEEcCCCCCCh--HHHHHHcCCEEEEecCCCCCCC--cCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHH
Q 012095 181 EVIIPAPFWVSY--PEMARIADATPVILPTRISENF--LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARI 256 (471)
Q Consensus 181 ~Vlv~~p~y~~~--~~~~~~~G~~~~~v~~~~~~~~--~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l 256 (471)
.+++..-+..+. .++++..|+ ++.+..++..+| .+++++++ +++++++|.+++-.+.||+..+ ++
T Consensus 82 ~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~th~ETstGv~~~--------~l 150 (349)
T TIGR01364 82 VADYIVTGAWSKKAAKEAKKYGV-VNVVASGKEGNYTKIPDPSTWE--ISEDAAYVHYCANETIHGVEFR--------EL 150 (349)
T ss_pred eEEEEECCHHHHHHHHHHHHhCC-cEEEeccccCCCCCCCCHHhcC--CCCCCCEEEEcCCCCcccEecc--------ee
Confidence 888765544433 367888898 777765422212 35666555 3467899999999999999876 56
Q ss_pred HHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHH----------
Q 012095 257 VAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK---------- 326 (471)
Q Consensus 257 ~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~---------- 326 (471)
++.+ ++++++|.+... +.....+.. ++ +++.|..|.||.+| +|++++++++++++..
T Consensus 151 ~~~~-~~l~iVDavss~----g~~~id~~~----~d--~~~~ssqK~lgP~G--lg~l~~s~~~~~~~~~~~~~~~~~~~ 217 (349)
T TIGR01364 151 PDVK-NAPLVADMSSNI----LSRPIDVSK----FG--LIYAGAQKNIGPAG--LTVVIVRKDLLGRASRITPSMLNYKI 217 (349)
T ss_pred cccC-CCeEEEEccccc----cCccCCHHH----cc--EEEEecccccCCCc--eEEEEECHHHHhhcccCCCCcchHHH
Confidence 6678 899999998875 222222221 23 88888999999777 8999999998876521
Q ss_pred HH--hcccCCCChHHHHHHHHHHhccCCChH-HHHHHHHHHHHHHHHHHHHhcCCCCCeeeC--C--CcceEEeEecCCc
Q 012095 327 IQ--SQFTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMSE--P--QGAFYLFIDFSTY 399 (471)
Q Consensus 327 ~~--~~~~~~~~~~~q~aa~~~L~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~--p--~~g~~~~~~~~~~ 399 (471)
.. .....+++....++..++|+.- .++ .++.+.++.++..+++++.|++++|+.... + ..+..+.+.+++.
T Consensus 218 ~~~~~~~~~Tp~~~~i~al~~al~~l--~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~ 295 (349)
T TIGR01364 218 HAENDSMYNTPPTFAIYVSGLVFKWL--KEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNE 295 (349)
T ss_pred HHhcCCCCCCCcHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCCh
Confidence 11 1223467777777777788751 123 488999999999999999999997764331 1 2223345555532
Q ss_pred cCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012095 400 YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~ 464 (471)
....++...+.+ .|+++.+|.. ..+.+|+|+.. +.||++.+++.|++++++
T Consensus 296 -----------~~~~~~~~~~~~-~Gi~~~~~~~--~~g~vRvS~~~~nt~edid~l~~al~~~~~~ 348 (349)
T TIGR01364 296 -----------ELEKRFLKEAEE-RGLVSLKGHR--SVGGMRASIYNAMPLEGVQALVDFMKEFQKK 348 (349)
T ss_pred -----------hHhHHHHHHHHH-CCCcccCCcc--ccCeeEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence 023456565554 5897777764 34689999987 899999999999987754
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.5e-17 Score=167.41 Aligned_cols=342 Identities=14% Similarity=0.158 Sum_probs=216.1
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.++|+..|. ..++. ++.+.+|+.+++.+... + ......+.+..+++.+.+.... ..+.++++++++++..
T Consensus 80 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~~-~-~~~~~~~~~~~lae~L~~~~p~--~~~~v~f~~SGsEAve 155 (459)
T PRK11522 80 QGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPL-H-SQELLDPLRAMLAKTLAALTPG--KLKYSFFCNSGTESVE 155 (459)
T ss_pred CCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCcc-c-ccccCCHHHHHHHHHHHHhCCC--CCCEEEEeCCchHHHH
Confidence 578899998884 45554 78899999999875322 1 1122345666677777654432 2368999999999999
Q ss_pred HHHHHhc----CCC-CeEEEcCCCCCChHHHHHHcCCEE-EE---ecCCCC---CCCcCCHHHHHhhhcc------CCcE
Q 012095 170 QAVLAVC----SPG-DEVIIPAPFWVSYPEMARIADATP-VI---LPTRIS---ENFLLDPKVLESKLTE------KSRL 231 (471)
Q Consensus 170 ~~~~~l~----~~g-d~Vlv~~p~y~~~~~~~~~~G~~~-~~---v~~~~~---~~~~ld~e~l~~~l~~------~~~~ 231 (471)
.+++... ++| ..|+....+|++....+....... .. .|..+. -.| .|.+.+++.+.. +..+
T Consensus 156 ~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~l~~~~~~~~~iAa 234 (459)
T PRK11522 156 AALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPF-GNIEAMRTALSECKKTGDDVAA 234 (459)
T ss_pred HHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCC-CCHHHHHHHHHHhhccCCcEEE
Confidence 8888643 123 468888888888765443322111 11 111110 011 267888877742 2345
Q ss_pred EEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccc-h
Q 012095 232 LILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-W 309 (471)
Q Consensus 232 i~i~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~ 309 (471)
|++...+.-.|. ..|++.++++.++|++| |+++|.||++..+--.|.. ..+....-..| +-+|+|.+| .| +
T Consensus 235 vIvEpv~g~~G~~~pp~~yl~~lr~lc~~~-g~llI~DEV~tG~GRtG~~-~a~e~~gv~PD----ivt~gK~lg-gG~~ 307 (459)
T PRK11522 235 VILEPIQGEGGVILPPEGYLTAVRKLCDEF-GALLILDEVQTGMGRTGKM-FACEHENVQPD----ILCLAKALG-GGVM 307 (459)
T ss_pred EEEecccCCCCCccCCHHHHHHHHHHHHHc-CCEEEeccceecCCccchh-hhhhccCCCCC----EEEechhhh-CCCc
Confidence 555544656676 45788899999999999 9999999999765222221 11111111112 337899998 78 6
Q ss_pred hheeeEcCHHHHHHHHH--HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC----CCCC-e
Q 012095 310 RLGYIAGPKHFVAACNK--IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE----LEGV-K 382 (471)
Q Consensus 310 R~G~v~~~~~~i~~l~~--~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~----~~g~-~ 382 (471)
.+|.+++.+++++.+.. .....+++.++++.+++.+.|+.-.. + .+.++.+++-+++.+.|++ .|.+ .
T Consensus 308 Pigav~~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~-~----~l~~~~~~~g~~l~~~L~~l~~~~~~~i~ 382 (459)
T PRK11522 308 PIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLE-Q----NLPAQAEQKGDYLLDGFRQLAREYPDLVQ 382 (459)
T ss_pred cceeEEEcHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhc-c----hHHHHHHHHHHHHHHHHHHHHHhCCCcee
Confidence 99999999998887642 22335666789999888888875211 1 2344444555555555544 3322 1
Q ss_pred eeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHH
Q 012095 383 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKK 460 (471)
Q Consensus 383 ~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~ 460 (471)
-+... |.++.+.+.+. .....+.+.|+++ ||.+.+... ..+.+|+.... +++++++++++|.+
T Consensus 383 ~VrG~-Gl~~giel~~~-----------~~~~~i~~~l~~~-Gvl~~~~~~--~~~~lr~~Ppl~~t~~~id~~l~~l~~ 447 (459)
T PRK11522 383 EARGK-GMLMAIEFVDN-----------EIGYNFASEMFRQ-RVLVAGTLN--NAKTIRIEPPLTLTIEQCEQVLKAARK 447 (459)
T ss_pred eEEec-eeEEEEEecCc-----------hHHHHHHHHHHHC-CeEEEecCC--CCCEEEEECCccCCHHHHHHHHHHHHH
Confidence 12223 45566666431 1345788888875 999876421 23678988775 99999999999999
Q ss_pred HHHhhC
Q 012095 461 GLLTLR 466 (471)
Q Consensus 461 ~l~~~~ 466 (471)
+++++.
T Consensus 448 ~l~~~~ 453 (459)
T PRK11522 448 ALAAMR 453 (459)
T ss_pred HHHHHH
Confidence 998765
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.3e-17 Score=163.13 Aligned_cols=305 Identities=18% Similarity=0.261 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCC
Q 012095 111 VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFW 189 (471)
Q Consensus 111 ~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~y 189 (471)
++..+++.+.+..+.... ...-..+|.+.+++++ ..++++.+++++.||.+++.++ +++||+|+++..+|
T Consensus 5 ~e~~~~v~~~l~s~~~~~-~g~~~~~fE~~~a~~~--------g~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~ 75 (363)
T PF01041_consen 5 EEEIDAVLEVLRSGWLST-YGPYVEEFEKEFAEYF--------GVKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTF 75 (363)
T ss_dssp HHHHHHHHHHHHHTCCSS-SSHHHHHHHHHHHHHH--------TSSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-
T ss_pred HHHHHHHHHHHHhCCccC-CCHHHHHHHHHHHHHh--------CCCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcc
Confidence 456677788887764332 1234577888888886 3568999999999999999987 57999999999999
Q ss_pred CChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEcc
Q 012095 190 VSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 269 (471)
Q Consensus 190 ~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De 269 (471)
..+...+...|++++++++++ +++.+|++.+++++++++++|++.+. -|...+ +.+|.++|++| |++||+|.
T Consensus 76 ~~~~~ai~~~G~~pv~~Di~~-~~~~id~~~~~~~i~~~t~ai~~~h~---~G~~~d---~~~i~~~~~~~-~i~lIeD~ 147 (363)
T PF01041_consen 76 PATASAILWAGAEPVFVDIDP-ETLNIDPEALEKAITPKTKAILVVHL---FGNPAD---MDAIRAIARKH-GIPLIEDA 147 (363)
T ss_dssp THHHHHHHHTT-EEEEE-BET-TTSSB-HHHHHHHHHTTEEEEEEE-G---GGB------HHHHHHHHHHT-T-EEEEE-
T ss_pred hHHHHHHHHhccEEEEEeccC-CcCCcCHHHHHHHhccCccEEEEecC---CCCccc---HHHHHHHHHHc-CCcEEEcc
Confidence 999999999999999999986 46889999999999999999996544 577776 99999999999 99999999
Q ss_pred CCCccc-cCCCCccccccCCCCCCceEEEecC--CcccCccchhheeeEcC-HHHHHHHHHHHhcc--------------
Q 012095 270 IYEHII-YAPATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAGP-KHFVAACNKIQSQF-------------- 331 (471)
Q Consensus 270 ~y~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~g~~G~R~G~v~~~-~~~i~~l~~~~~~~-------------- 331 (471)
++.... +.+. ....+ ..+.+.|| +|.+. +| -.|+++.+ +++.++++.++...
T Consensus 148 a~a~g~~~~g~---~~G~~-----gd~~~fSf~~~K~i~-~g-eGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 217 (363)
T PF01041_consen 148 AQAFGARYKGR---PVGSF-----GDIAIFSFHPTKIIT-TG-EGGAVVTNDPELAERARALRNHGRSRDAFRRYRHELP 217 (363)
T ss_dssp TTTTT-EETTE---ETTSS-----SSEEEEESSTTSSS--SS-S-EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSS
T ss_pred ccccCceeCCE---eccCC-----CCceEecCCCCCCCc-CC-CCeeEEecHHHHHHHhhhhhccCcCcccccccccccc
Confidence 998743 2221 11111 13677787 58884 22 34888875 56777777654321
Q ss_pred ---cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeee-CCCc----ce-EEeEecCCccCC
Q 012095 332 ---TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQG----AF-YLFIDFSTYYGS 402 (471)
Q Consensus 332 ---~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~-~p~~----g~-~~~~~~~~~~~~ 402 (471)
++.++.+..+.+...|+. +++..+.-+++.+++.+.|.+++++... .+.+ .+ .+.+.+++...
T Consensus 218 ~g~n~rm~~~~AAigl~QL~~-------L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~- 289 (363)
T PF01041_consen 218 PGYNFRMSELQAAIGLAQLKR-------LDEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEAL- 289 (363)
T ss_dssp S--B-B-BHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCGC-
T ss_pred CCcccccHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccc-
Confidence 233455554444444443 5666666677888888999998876442 2221 22 23444543200
Q ss_pred cccCCCCCCCHHHHHHHHHHcCCEEEECCCC-C-C------C-----C-----------CcEEEEeec--CHHHHHHHHH
Q 012095 403 EAEGFGKIENSESLCRYLLDKAQVALVPGDA-F-G------D-----D-----------TCIRISYAA--SLTTLQAAVE 456 (471)
Q Consensus 403 ~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~-f-~------~-----~-----------~~iRis~~~--~~e~i~~~~~ 456 (471)
.+-.++.+.|.++ ||.+.+... . . . . ..+-+-+.. ++++++..++
T Consensus 290 --------~~rd~l~~~L~~~-GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~ 360 (363)
T PF01041_consen 290 --------ADRDELVEALRAR-GIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAE 360 (363)
T ss_dssp --------STHHHHHHHHHHT-TBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHH
T ss_pred --------chHHHHHHHHHHC-CCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhh
Confidence 1467888888776 999888652 1 0 0 0 134555444 7788888887
Q ss_pred HHH
Q 012095 457 RIK 459 (471)
Q Consensus 457 ~l~ 459 (471)
.|+
T Consensus 361 ~ir 363 (363)
T PF01041_consen 361 AIR 363 (363)
T ss_dssp HHH
T ss_pred ccC
Confidence 764
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-17 Score=163.14 Aligned_cols=214 Identities=12% Similarity=0.123 Sum_probs=162.0
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEecCC
Q 012095 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTR 209 (471)
Q Consensus 134 ~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~G~~~~~v~~~ 209 (471)
...|.+.|+++- ..+..++++++++|+..++.+++++||+|++++..|.+....+ +..|.++..++.
T Consensus 64 ~~~le~~la~LE--------g~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~- 134 (395)
T PRK08114 64 HFSLQEAMCELE--------GGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDP- 134 (395)
T ss_pred HHHHHHHHHHHh--------CCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECC-
Confidence 445666666642 3467888888999999999999999999999998887776554 567999988874
Q ss_pred CCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhC-CCeEEEEccCCCccccCCCCccccccCC
Q 012095 210 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH-PRLLVLSDEIYEHIIYAPATHTSFASLP 288 (471)
Q Consensus 210 ~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~ 288 (471)
.|.+.+++++++++|+|++.+|+||+|.+.+ +++|+++|+++ +++++++|.++.--. . ....
T Consensus 135 ------~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~D---I~~Ia~ia~~~g~g~~lvVDnT~a~p~----~-~~pl--- 197 (395)
T PRK08114 135 ------LIGADIAKLIQPNTKVVFLESPGSITMEVHD---VPAIVAAVRSVNPDAVIMIDNTWAAGV----L-FKAL--- 197 (395)
T ss_pred ------CCHHHHHHhcCCCceEEEEECCCCCCCEeec---HHHHHHHHHHhCCCCEEEEECCCcccc----c-cCHH---
Confidence 3789999999999999999999999999999 99999999997 249999999996411 1 1111
Q ss_pred CCCCceEEEecCCcccCccc-hhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Q 012095 289 GMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367 (471)
Q Consensus 289 ~~~~~~i~~~S~SK~~g~~G-~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~ 367 (471)
..+-.+++.|.+|.++-+| .-.|.++.++++.+.+.........+.+++....+..-| +-+.-+.++..++
T Consensus 198 -~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl-------~TL~lR~~~~~~n 269 (395)
T PRK08114 198 -DFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENSYLMGQMVDADTAYMTSRGL-------RTLGVRLRQHEES 269 (395)
T ss_pred -HcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHHHhccCCCCHHHHHHHHcCC-------CcHHHHHHHHHHH
Confidence 1345599999999885343 567888888887777776665566667777654433333 3355666777788
Q ss_pred HHHHHHHhcCCCCC
Q 012095 368 RDFLVKSFGELEGV 381 (471)
Q Consensus 368 r~~l~~~L~~~~g~ 381 (471)
...+.+.|++.|.+
T Consensus 270 a~~va~~L~~hp~V 283 (395)
T PRK08114 270 SLKVAEWLAEHPEV 283 (395)
T ss_pred HHHHHHHHHcCCCE
Confidence 88888999887654
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.4e-17 Score=165.38 Aligned_cols=347 Identities=17% Similarity=0.131 Sum_probs=209.6
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|..+||+..|. ..++. +|.+.+++.+++.++.....+ .+....+++.+.+..+ .+.+.++++++++..
T Consensus 73 DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~~~~~~~~----~~~~~~lAe~l~~~~~----~~~v~F~nSGtEA~e 144 (453)
T PRK07046 73 DGHRYDDFCLGDTGAMFGHSPAPVARALAEQARRGLTTMLP----SEDAAWVGEELARRFG----LPYWQVATTATDANR 144 (453)
T ss_pred CCCEEEEecccccccccCCCCHHHHHHHHHHHHhCCCCCCC----CHHHHHHHHHHHHHhC----CCEEEEECCHHHHHH
Confidence 678899998776 33443 689999999999875432212 3555566666655443 468999999999999
Q ss_pred HHHHHhcC-CC-CeEEEcCCCCCChHHHHHH--cCCEEE------EecC--CC---CCCCcCCHHHHHhhhcc-CCcEEE
Q 012095 170 QAVLAVCS-PG-DEVIIPAPFWVSYPEMARI--ADATPV------ILPT--RI---SENFLLDPKVLESKLTE-KSRLLI 233 (471)
Q Consensus 170 ~~~~~l~~-~g-d~Vlv~~p~y~~~~~~~~~--~G~~~~------~v~~--~~---~~~~~ld~e~l~~~l~~-~~~~i~ 233 (471)
.+++.... .| +.|+..+.+|+++...... .+.+.. .++. .. .-.|+ |++.+++.+.. +..+|+
T Consensus 145 ~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~n-d~~~l~~~l~~~~vAavi 223 (453)
T PRK07046 145 FVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEFN-DLAALEAALADGDVAAVL 223 (453)
T ss_pred HHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCCC-CHHHHHHHhCCCCeEEEE
Confidence 88886531 33 6788888889887432211 111100 0000 00 00122 88999998853 344555
Q ss_pred EcCCCCCcc-cCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhhe
Q 012095 234 LCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLG 312 (471)
Q Consensus 234 i~~p~NPtG-~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G 312 (471)
+.-.+.-.| ...+++.++++.++|++| |+++|.||+.. +..+-.+......+.+ | +-+|+|.+| .|+.+|
T Consensus 224 ~EPi~g~~G~~~p~~~fl~~lr~lc~~~-g~llI~DEV~t-fr~g~Gg~~~~~gv~P--D----i~t~gK~lg-gG~Pi~ 294 (453)
T PRK07046 224 AEPAMTNIGMVLPEPGFHEALRELTRRY-GTLLVIDETHT-ISSGPGGYTRAHGLEP--D----FLVVGKPIA-GGVPCA 294 (453)
T ss_pred ECCCCCCCCCcCCCHHHHHHHHHHHHHh-CCEEEEEcccc-CccCCcchhHHhCCCc--c----ceeehhhhc-CCCcce
Confidence 533233344 556778999999999999 99999999987 3322111111122221 2 345899998 899999
Q ss_pred eeEcCHHHHHHHHHH---------HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCee
Q 012095 313 YIAGPKHFVAACNKI---------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 383 (471)
Q Consensus 313 ~v~~~~~~i~~l~~~---------~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~ 383 (471)
.+++++++++.+... ....+++.++++.+++.+.|+.-.. ++.+++..+.-+..++.+.+.+.+. ++.+
T Consensus 295 av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~-~~~~~~~~~~g~~l~~~L~~l~~~~-~~~~ 372 (453)
T PRK07046 295 VYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMT-EAAYAHMLALAARLAAGLRAVIARH-GLPW 372 (453)
T ss_pred eeeehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHhC-CCCe
Confidence 999999999887632 1223667899999999888874211 2334444333333444444444444 3322
Q ss_pred -eCCCcceEEeEec-CCccC-CcccCCC-CCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHH
Q 012095 384 -SEPQGAFYLFIDF-STYYG-SEAEGFG-KIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIK 459 (471)
Q Consensus 384 -~~p~~g~~~~~~~-~~~~~-~~~~~~~-~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~ 459 (471)
+...|.++ .+.+ ++... ....... ...-...+...|+++ ||++.|.. +.++++...++++|+++++++.
T Consensus 373 ~v~g~G~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gv~~~~~~-----~~~~~~p~~t~~did~~~~~~~ 445 (453)
T PRK07046 373 HVTRVGARV-EFQFAPTPPRNGAEAAAALDPELEAALHLYLLNR-GVLITPFH-----NMMLVCPATTAADVDRLVAAFD 445 (453)
T ss_pred EEEEeCcEE-EEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHC-CCEEeccc-----CcEEEeCCCCHHHHHHHHHHHH
Confidence 22334442 2332 11100 0000000 000123566677775 99988732 4678888889999999999999
Q ss_pred HHHHhhC
Q 012095 460 KGLLTLR 466 (471)
Q Consensus 460 ~~l~~~~ 466 (471)
++++++.
T Consensus 446 ~~l~~~~ 452 (453)
T PRK07046 446 ACLGELL 452 (453)
T ss_pred HHHHHHh
Confidence 9998753
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-17 Score=162.33 Aligned_cols=204 Identities=18% Similarity=0.215 Sum_probs=159.7
Q ss_pred hcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcC----CCC-CC--CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCCh
Q 012095 92 QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG----FTR-YT--PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 164 (471)
Q Consensus 92 ~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~----~~~-Y~--~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~ 164 (471)
..|.+.+.|..+.-. +.++.|.+++...+... ... |+ ...+..+-|+.+|++++ .++.+|++|+|+
T Consensus 39 ~~~~~~vyld~~at~-p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklIn------Ad~~dIiFts~A 111 (428)
T KOG1549|consen 39 HHGTRPVYLDNQATG-PMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLIN------ADPSDIVFTSGA 111 (428)
T ss_pred cCCCccEEEecCcCC-CCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhC------CCCCcEEEeCCc
Confidence 345577888877633 23677888887766542 222 32 22346778888888875 477789999999
Q ss_pred HHHHHHHHHHhc-CCCC----eEEEcCCCCCChHHH---HHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcC
Q 012095 165 KQSILQAVLAVC-SPGD----EVIIPAPFWVSYPEM---ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCS 236 (471)
Q Consensus 165 ~~al~~~~~~l~-~~gd----~Vlv~~p~y~~~~~~---~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~ 236 (471)
|++++++++.+. ..+| .|++..-.|++.... .+..|++++++|+. +++..|.+.+++.++++|+++.|..
T Consensus 112 TEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~--~~~~~d~~~~~~~i~~~T~lv~I~~ 189 (428)
T KOG1549|consen 112 TESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVE--DSGLVDISKLREAIRSKTRLVSIMH 189 (428)
T ss_pred hHHHHHHHHHhhccccccccceEEEecccCcchhHHHHHHHhcCeEEEEeccC--ccccccHHHHHHhcCCCceEEEEEe
Confidence 999999999874 3566 899988888877654 45679999999997 3456899999999999999999999
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEc
Q 012095 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 316 (471)
Q Consensus 237 p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~ 316 (471)
.+|.+|+.+| +++|+.+|+++ ++.+++|.+++- |.-...+..+. -.+...|..|.||.+| +|++++
T Consensus 190 Vnn~~gv~~P---v~EI~~icr~~-~v~v~~DaAQav----G~i~vDV~eln----~D~~s~s~HK~ygp~~--iGaLYv 255 (428)
T KOG1549|consen 190 VNNEIGVLQP---VKEIVKICREE-GVQVHVDAAQAV----GKIPVDVQELN----ADFLSISAHKIYGPPG--IGALYV 255 (428)
T ss_pred cccCcccccc---HHHHHHHhCcC-CcEEEeehhhhc----CCccccHHHcC----chheeeecccccCCCc--ceEEEE
Confidence 9999999999 99999999998 999999999975 43334444443 3367788999999888 999998
Q ss_pred CH
Q 012095 317 PK 318 (471)
Q Consensus 317 ~~ 318 (471)
.+
T Consensus 256 r~ 257 (428)
T KOG1549|consen 256 RR 257 (428)
T ss_pred cc
Confidence 75
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.7e-19 Score=165.38 Aligned_cols=324 Identities=21% Similarity=0.295 Sum_probs=190.5
Q ss_pred EEcCCCCCCCCChHHHHHHHHHHHH-cCC--CCCCC-----CCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 98 IRLAAGEPDFDTPVLIAEAGINAIR-EGF--TRYTP-----NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 98 i~l~~g~~~~~~p~~v~~a~~~~~~-~~~--~~Y~~-----~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
+|+..|+|.+--|-....+...++- .++ ..|-. ..-.++|.+.|.++.....+...+...|++++|+++.++
T Consensus 1 ~d~d~GDP~~~E~yW~~~~~~~avvi~gw~rMSY~~~~~~~~f~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~ 80 (363)
T PF04864_consen 1 ADADSGDPTFFEPYWRRHGDSSAVVIPGWHRMSYFSDSSNGWFISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFN 80 (363)
T ss_dssp EEESS---GGGHHHHCCTHHHH-EEE-TTTT-SSSS-TTSSTTS-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHH
T ss_pred CCcCCCCchhhHHHHHhcCcceeEEEeccccceeEEecCCceeccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHH
Confidence 4677788765323222222222211 232 33433 123578888888888766555455679999999999999
Q ss_pred HHHHHhcCC----C--CeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEE-EEcCCCCCcc
Q 012095 170 QAVLAVCSP----G--DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLL-ILCSPSNPTG 242 (471)
Q Consensus 170 ~~~~~l~~~----g--d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i-~i~~p~NPtG 242 (471)
.++.+|... + -.|+...|+|+.|...............- |...+.+. +.....| ++++||||.|
T Consensus 81 AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~y~w~G--------da~~~~~~-~~~~~~IElVTSPNNPDG 151 (363)
T PF04864_consen 81 AALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSRLYKWAG--------DASNFKNS-DNPSPYIELVTSPNNPDG 151 (363)
T ss_dssp HHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTTEEEEE--------ECCCGTT--S-CCGEEEEEESS-TTT-
T ss_pred HHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhccccCccccc--------cHHhhccC-CCCCCeEEEEeCCCCCcc
Confidence 999998532 1 36999999999999876544322222221 22222211 1123344 6899999999
Q ss_pred cCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcC-HHHH
Q 012095 243 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFV 321 (471)
Q Consensus 243 ~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~-~~~i 321 (471)
..-. . +++.- +..+|.|-+|+.=.|.+ +....+..|.+.|+||.-|-+|.|+||++.. +++.
T Consensus 152 ~lr~-----~---V~~g~-~~k~I~D~AYYWPhyTp--------I~~~aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va 214 (363)
T PF04864_consen 152 QLRE-----A---VLNGS-SGKVIHDLAYYWPHYTP--------ITAPADHDIMLFTLSKLTGHAGSRFGWALVKDEEVA 214 (363)
T ss_dssp -------------SSTTT-EEEEEEE-TT-STTTS-----------S-B--SEEEEEHHHHCS-GGG-EEEEEES-HHHH
T ss_pred cccc-----h---hcCCC-Ccceeeeeeeecccccc--------cCCCCCCceEEEEEecccCccccccceeeecCHHHH
Confidence 8533 2 23343 67789999998622221 1112355588999999999999999998875 5688
Q ss_pred HHHHHHHhcccCCCChHHHHHHHHHHhc---cCCC----hHHHHHHHHHHHHHHHHHHHHhcCCCCCe------------
Q 012095 322 AACNKIQSQFTSGASSISQKAGVAALGL---GYAG----GEVVSKMVKAFRERRDFLVKSFGELEGVK------------ 382 (471)
Q Consensus 322 ~~l~~~~~~~~~~~~~~~q~aa~~~L~~---~~~~----~~~~~~~~~~~~~~r~~l~~~L~~~~g~~------------ 382 (471)
+++.......+.+.+.=+|.=+++.|+. +... .+...--++.+++|-+.|.+.+..-.-+.
T Consensus 215 ~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff 294 (363)
T PF04864_consen 215 KKMTKYMELNTIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFF 294 (363)
T ss_dssp HHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTT
T ss_pred HHHHHHHHHhcccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhcccc
Confidence 8998888888889999999888887763 1110 12344455666777777777777631121
Q ss_pred --eeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCC-CcEEEEeecCHHHHHHHHHHHH
Q 012095 383 --MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD-TCIRISYAASLTTLQAAVERIK 459 (471)
Q Consensus 383 --~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~-~~iRis~~~~~e~i~~~~~~l~ 459 (471)
+..|..+ |.|+++... ..+=|..+++++||..+.|..||.+ .|+|||+-.++++++.+++||.
T Consensus 295 ~~~~~psPa-fAWlkCe~e-------------ed~DC~~~l~~~~I~tr~G~~fga~~ryVRlSml~~~d~Fd~l~~rL~ 360 (363)
T PF04864_consen 295 KRVREPSPA-FAWLKCERE-------------EDEDCYAVLREAKIITRSGVLFGADSRYVRLSMLKRDDDFDQLLERLS 360 (363)
T ss_dssp TCEEE---S-EEEEEESSC-------------GGSSHHHHHHCTTEEEEEGGGGTS-TTEEEEESSS-HHHHHHHHHHHH
T ss_pred ccccCCCCC-eEEEecCCc-------------ccccHHHHHHhCCcccCCCCccCCCCCeEEEeccCCHHHHHHHHHHHH
Confidence 1233444 599999753 1122445566789999999999975 7999999999999999999997
Q ss_pred HH
Q 012095 460 KG 461 (471)
Q Consensus 460 ~~ 461 (471)
+.
T Consensus 361 ~l 362 (363)
T PF04864_consen 361 KL 362 (363)
T ss_dssp CC
T ss_pred hh
Confidence 53
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-17 Score=179.31 Aligned_cols=339 Identities=15% Similarity=0.124 Sum_probs=214.4
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcC----CCCCCCCC----CCHHHHHHHHHHHHHHhCCCCCC-C-cEEEeCChHH
Q 012095 97 VIRLAAGEPDFDTPVLIAEAGINAIREG----FTRYTPNA----GTLELRSAICHKLKEENGLSYTP-D-QILVSNGAKQ 166 (471)
Q Consensus 97 ~i~l~~g~~~~~~p~~v~~a~~~~~~~~----~~~Y~~~~----G~~~lr~~ia~~~~~~~g~~~~~-~-~i~it~G~~~ 166 (471)
++.|..+.-.+.++..+.+++.+...+. ...|.... -..+.|+.++++ .|. ++ + +|++|+|+|+
T Consensus 35 ~iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~----lga--~~~~~~VvFtsnaT~ 108 (805)
T PLN02724 35 VVYLDHAGATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEY----FNA--PPSDYACVFTSGATA 108 (805)
T ss_pred CEeEeCCCCCCCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHH----hCC--CccceEEEEeCChHH
Confidence 6888887766555666666665554321 11111111 133455555555 453 34 3 6899999999
Q ss_pred HHHHHHHHh-cCCCCeEEEcCCCCCChHHH---HHHcCCEEEEecCCCC------CCCcCCH--HHHHhhh---------
Q 012095 167 SILQAVLAV-CSPGDEVIIPAPFWVSYPEM---ARIADATPVILPTRIS------ENFLLDP--KVLESKL--------- 225 (471)
Q Consensus 167 al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~---~~~~G~~~~~v~~~~~------~~~~ld~--e~l~~~l--------- 225 (471)
++..++..+ .++||+|++..-.|++.... ++..|++++.++++.+ ....+++ +.+++.+
T Consensus 109 alnlva~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~ 188 (805)
T PLN02724 109 ALKLVGETFPWSSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKRED 188 (805)
T ss_pred HHHHHHHHCCCCCCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccc
Confidence 999998887 67899999987777765543 3456999999987621 1112333 5666653
Q ss_pred -ccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhC----CCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecC
Q 012095 226 -TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH----PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF 300 (471)
Q Consensus 226 -~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~----~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 300 (471)
.++++++.+++.+|-||..+|.+.++++.+.++.+ .++++++|.++.. +.....+.. .+..+++.|+
T Consensus 189 ~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~----g~~piDv~~----~~~Dfl~~S~ 260 (805)
T PLN02724 189 DGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGC----GTSPPDLSR----YPADFVVVSF 260 (805)
T ss_pred cCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhc----CCCCCChhh----cCCCEEEEec
Confidence 14568888999999999999955433333322111 1367999998864 332233332 2445889999
Q ss_pred CcccC-ccchhheeeEcCHHHHHHHHHHH------------------------hcccCCCChHHHHHHHHHHhccCCChH
Q 012095 301 SKAFA-MTGWRLGYIAGPKHFVAACNKIQ------------------------SQFTSGASSISQKAGVAALGLGYAGGE 355 (471)
Q Consensus 301 SK~~g-~~G~R~G~v~~~~~~i~~l~~~~------------------------~~~~~~~~~~~q~aa~~~L~~~~~~~~ 355 (471)
.|.+| -.| +|++++++++.+.+.... +.-..+++..+..++.++++. ..+
T Consensus 261 HK~~GgP~G--~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~---l~~ 335 (805)
T PLN02724 261 YKIFGYPTG--LGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKL---LNR 335 (805)
T ss_pred ceeccCCCC--ceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHH---HHH
Confidence 99997 334 899999988776654210 011123455555556666654 122
Q ss_pred -HHHHHHHHHHHHHHHHHHHhcCCC------CCeeeCCC---------cceEEeEecCCccCCcccCCCCCCCHHHHHHH
Q 012095 356 -VVSKMVKAFRERRDFLVKSFGELE------GVKMSEPQ---------GAFYLFIDFSTYYGSEAEGFGKIENSESLCRY 419 (471)
Q Consensus 356 -~~~~~~~~~~~~r~~l~~~L~~~~------g~~~~~p~---------~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (471)
.++.+.++.++.++++.+.|.+++ ++.++.+. ++. +.+.+...-+ .. -....+.+
T Consensus 336 ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~i-vsFnv~~~~~-------~~-v~~~~v~~ 406 (805)
T PLN02724 336 LTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPI-VTFNLKRADG-------SW-VGHREVEK 406 (805)
T ss_pred hChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCE-EEEEEEcCCC-------CE-eCHHHHHH
Confidence 356777888889999999998875 46676542 344 3334432200 00 11233455
Q ss_pred HHHcCCEEEECCCCCCC-----------------------------------CCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012095 420 LLDKAQVALVPGDAFGD-----------------------------------DTCIRISYAA--SLTTLQAAVERIKKGL 462 (471)
Q Consensus 420 Ll~~~gV~v~pg~~f~~-----------------------------------~~~iRis~~~--~~e~i~~~~~~l~~~l 462 (471)
|+.++||.++.|..+.. .+.+|+|++. +.+|++++++.|++.+
T Consensus 407 l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~ 486 (805)
T PLN02724 407 LASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSF 486 (805)
T ss_pred HHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHh
Confidence 67777999999876531 2779999997 8999999999999866
Q ss_pred H
Q 012095 463 L 463 (471)
Q Consensus 463 ~ 463 (471)
.
T Consensus 487 ~ 487 (805)
T PLN02724 487 V 487 (805)
T ss_pred h
Confidence 3
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.1e-17 Score=167.10 Aligned_cols=346 Identities=13% Similarity=0.147 Sum_probs=208.8
Q ss_pred cCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.+||+..|.. .++. ++.+.+++.+++.+.. .|+. ..++...+++.+.+..+ ..+.+.++++++++..
T Consensus 97 dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~~~~-~~~~---~~~~~~~lAe~l~~~~p---~~~~v~f~~SGsEA~e 169 (474)
T PLN02482 97 DGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGT-SFGA---PCLLENVLAEMVIDAVP---SVEMVRFVNSGTEACM 169 (474)
T ss_pred CCCEEEEecccccccccCCCCHHHHHHHHHHHhhCC-CCCC---CCHHHHHHHHHHHHhCC---CCCEEEEeCChHHHHH
Confidence 5788999987763 3444 7899999999998754 3322 23566667777765543 2479999999999999
Q ss_pred HHHHHhcC-CC-CeEEEcCCCCCChHHHHH-Hc--CCEEE------EecCCC-C----CCCcCCHHHHHhhhcc---CCc
Q 012095 170 QAVLAVCS-PG-DEVIIPAPFWVSYPEMAR-IA--DATPV------ILPTRI-S----ENFLLDPKVLESKLTE---KSR 230 (471)
Q Consensus 170 ~~~~~l~~-~g-d~Vlv~~p~y~~~~~~~~-~~--G~~~~------~v~~~~-~----~~~~ld~e~l~~~l~~---~~~ 230 (471)
.+++.... .| +.|+....+|+++...+. .. |.... .+|... . -.|+ |++.+++.+.. +..
T Consensus 170 ~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~n-d~~~l~~~l~~~~~~iA 248 (474)
T PLN02482 170 GVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYN-DLEAVKKLFEANKGEIA 248 (474)
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCC-ChHHHHHHHHhCCCceE
Confidence 88886531 33 678888888888653211 11 10000 001000 0 0111 78889888853 344
Q ss_pred EEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccch
Q 012095 231 LLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGW 309 (471)
Q Consensus 231 ~i~i~~p~NPtG~~~-~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~ 309 (471)
+|++.......|.+. +++.+++|.++|++| |+++|.||++..+..+.........+. .| +.+|+|.+| .|+
T Consensus 249 avI~Epv~g~~G~i~p~~~fl~~lr~lc~~~-g~lLI~DEV~tGfR~g~~ga~~~~gv~--PD----i~t~gK~lg-gG~ 320 (474)
T PLN02482 249 AVILEPVVGNSGFIVPKKEFLEGLREITKEN-GALLVFDEVMTGFRIAYGGAQEYFGIT--PD----LTTLGKVIG-GGL 320 (474)
T ss_pred EEEECCCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCeecCcchHhHHhCCC--CC----EEEecchhh-CCC
Confidence 555544455577655 578999999999999 999999999987633211111111221 12 457899998 899
Q ss_pred hheeeEcCHHHHHHHHHH---HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCC---CCCee
Q 012095 310 RLGYIAGPKHFVAACNKI---QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL---EGVKM 383 (471)
Q Consensus 310 R~G~v~~~~~~i~~l~~~---~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~---~g~~~ 383 (471)
.+|.+++++++++.+... ....+++.++++..++.+.|+.-.. + +..++..++-+++.+.|+++ -|+.+
T Consensus 321 Pigav~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~-~----~~~~~~~~~g~~l~~~L~~l~~~~g~~~ 395 (474)
T PLN02482 321 PVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQ-P----GTYEYLDKITKKLIQGILEAGKKAGHEM 395 (474)
T ss_pred ceEEEEEcHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhc-c----CHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 999999999999987531 2234556788888888888875211 2 23334444444444444432 13333
Q ss_pred e-CCCcceEE-eEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHH
Q 012095 384 S-EPQGAFYL-FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKG 461 (471)
Q Consensus 384 ~-~p~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~ 461 (471)
. ...++++- .+.-+..................+.+.|+++ ||++.|... . .+ -+++..++++|+++++++.++
T Consensus 396 ~~~~v~g~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~-Gv~~~~~~~-~--~~-~psl~ht~~dId~~l~al~~~ 470 (474)
T PLN02482 396 CGGYISGMFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEE-GVYLAPSQF-E--AG-FTSLAHTEEDIDFTIAAAERV 470 (474)
T ss_pred EEcccceEEEEEEecCCccChhhhccCCHHHHHHHHHHHHHC-CeEEeccCC-C--CC-cCCCCCCHHHHHHHHHHHHHH
Confidence 2 23344442 2221110000000000000134677778876 999988431 1 11 167777999999999999999
Q ss_pred HHh
Q 012095 462 LLT 464 (471)
Q Consensus 462 l~~ 464 (471)
+++
T Consensus 471 l~~ 473 (474)
T PLN02482 471 LAR 473 (474)
T ss_pred HHh
Confidence 875
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-17 Score=165.14 Aligned_cols=317 Identities=12% Similarity=0.045 Sum_probs=206.0
Q ss_pred ChHH-HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeC-ChHHHHHHHHHHhcCC-CCeEEEc
Q 012095 109 TPVL-IAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSN-GAKQSILQAVLAVCSP-GDEVIIP 185 (471)
Q Consensus 109 ~p~~-v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~-G~~~al~~~~~~l~~~-gd~Vlv~ 185 (471)
+|+. +.+++...... ..+.++ -..++-+...+.+.+.+|.+ ++++|++++ |+|.+++.++..++++ ++.|+.
T Consensus 23 ~~~~~v~~a~~~~~~~-~~hr~~--~f~~~~~~~r~~l~~l~~~~-~~~~v~~~~gs~T~~~~~~~~~l~~~~~~~vi~- 97 (378)
T PRK03080 23 KRPGWQLEALADALLG-RSHRQK--PVKALLKRVIEGTRELLSLP-EGYEVGIVPGSDTGAWEMALWSLLGARRVDHLA- 97 (378)
T ss_pred CChHHHHHHHHhhhcc-cCcCCH--HHHHHHHHHHHHHHHHhCCC-CCceEEEECCchHHHHHHHHHhcCCCCcceEEE-
Confidence 3455 88888754321 112222 22445555555666666742 345898886 8999999999999875 455555
Q ss_pred CCCCCChHH--HHHHcCC-EEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC
Q 012095 186 APFWVSYPE--MARIADA-TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 262 (471)
Q Consensus 186 ~p~y~~~~~--~~~~~G~-~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~ 262 (471)
.-.|..-.. +.+..|+ +++.++.+. +..+|+++++. ++.|.+++-.|.||..++ +++|++ +++ +
T Consensus 98 ~g~f~~~~~~~~~~~~g~~~v~~~~~~~--g~~~d~~~i~~-----~~~V~~~h~~t~tG~~~p---i~~I~~--~~~-g 164 (378)
T PRK03080 98 WESFGSKWATDVVKQLKLEDPRVLEADY--GSLPDLSAVDF-----DRDVVFTWNGTTTGVRVP---VARWIG--ADR-E 164 (378)
T ss_pred eCHHHHHHHHHHHhhcCCCCceEeccCC--CCCCCHhhcCC-----CCCEEEEecCCccceecc---chhhcc--ccC-C
Confidence 445544332 2356788 888888753 34577776432 567888999999999999 777777 778 9
Q ss_pred eEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCc-cchhheeeEcCHHHHHHHHHHH-------------
Q 012095 263 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM-TGWRLGYIAGPKHFVAACNKIQ------------- 328 (471)
Q Consensus 263 ~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~-~G~R~G~v~~~~~~i~~l~~~~------------- 328 (471)
+++++|.+.+.. .....+.. -.+++.|..|.++. +| +|+++.+++.++++....
T Consensus 165 ~~~vVDa~qs~G----~~pidv~~------iD~~~~s~~K~l~~P~G--~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~ 232 (378)
T PRK03080 165 GLTICDATSAAF----ALPLDWSK------LDVYTFSWQKVLGGEGG--HGMAILSPRAVERLESYTPARPIPKFFRLTK 232 (378)
T ss_pred CeEEEecccccc----cCCCCHHH------CcEEEEehhhhCCCCCc--eEEEEECHHHHHhhhcccCCCCCchhheecc
Confidence 999999988752 22222222 23889999999853 45 899999998887764310
Q ss_pred ---------hccc-CCCChHHHHHHHHHHhccCCChH-HHHHHHHHHHHHHHHHHHHhcCCCCCeeeC--C--CcceEEe
Q 012095 329 ---------SQFT-SGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMSE--P--QGAFYLF 393 (471)
Q Consensus 329 ---------~~~~-~~~~~~~q~aa~~~L~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~--p--~~g~~~~ 393 (471)
...+ ..++.....++.++|+.- .+. .++.+.++.+++.+++++.|++++++.+.. + .++..+.
T Consensus 233 ~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l--~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~ 310 (378)
T PRK03080 233 GGKAIENSFKGQTINTPSMLTVEDYLDQLDWA--NSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVT 310 (378)
T ss_pred chHHhhhhhcCCcccCchHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEE
Confidence 0001 123444444445555541 122 367788888999999999999886665542 2 2323345
Q ss_pred EecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhCC
Q 012095 394 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 467 (471)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~~~ 467 (471)
+.+++. . . ....++..+|+++ |+.+..|......+.+|+|+.. ++++++.+++.|++++++++.
T Consensus 311 ~~~~~~-~---~-----~~~~~~~~~l~~~-~i~v~~g~~~~~~~~vRis~~~~~t~~di~~l~~al~~~~~~~~~ 376 (378)
T PRK03080 311 LDFVDA-Q---A-----AVDAAAVAKLLRE-NGAVDIEPYRDAPNGLRIWCGPTVEPADVEALTPWLDWAFERLKA 376 (378)
T ss_pred EEcCCc-h---H-----HHHHHHHHHHHHc-CCeeccccccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 566540 0 0 0234567777776 7888776432235789999886 889999999999999987764
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.6e-17 Score=163.10 Aligned_cols=314 Identities=14% Similarity=0.156 Sum_probs=203.7
Q ss_pred CChHHHHHHHHHHHHc----CCCCCCCCCCCH---HHHHHHHHHHHHHhCCCCCCCcEEEeCC-hHHHHHHHHHHhcC--
Q 012095 108 DTPVLIAEAGINAIRE----GFTRYTPNAGTL---ELRSAICHKLKEENGLSYTPDQILVSNG-AKQSILQAVLAVCS-- 177 (471)
Q Consensus 108 ~~p~~v~~a~~~~~~~----~~~~Y~~~~G~~---~lr~~ia~~~~~~~g~~~~~~~i~it~G-~~~al~~~~~~l~~-- 177 (471)
..|+.|++++.+.+.+ +...|....-.. ++-+.+.+.+.+.+|.+ ++++|++|+| +|++++.++..++.
T Consensus 9 ~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~-~~~~vvf~~gs~T~a~~~~~~~l~~~~ 87 (355)
T cd00611 9 ALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIP-DNYKVLFLQGGATGQFAAVPLNLLGDK 87 (355)
T ss_pred CCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCC-CCceEEEEcCCchHHHHHHHHhcCCCC
Confidence 4588999999887743 112222221112 33444444455555632 5678999988 99999999999987
Q ss_pred -CCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCC-HHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHH
Q 012095 178 -PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLD-PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR 255 (471)
Q Consensus 178 -~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld-~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~ 255 (471)
+||.|++ .+......+.++..|++++.++.+.+.++ .+ ++..+..+++++++|.+++-.|.||..++ +
T Consensus 88 ~~~~~i~~-g~~~~~~~~~a~~~g~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~lV~~~h~~t~tG~~~~--------~ 157 (355)
T cd00611 88 GTADYVVT-GAWSAKAAKEAKRYGGVVVIVAAKEEGKY-TKIPDVETWDLAPDAAYVHYCSNETIHGVEFD--------E 157 (355)
T ss_pred CeEEEEEC-CHHHHHHHHHHHhcCCCcEEEecccccCC-CCCCCHhhcCCCCCCCEEEEeCCcccccEEcc--------e
Confidence 5555554 22222223477888999999987543222 14 33333446778999999999999999754 3
Q ss_pred HHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHH-------H
Q 012095 256 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI-------Q 328 (471)
Q Consensus 256 l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~-------~ 328 (471)
+++.| ++++++|.+... |.....+.. .+ +.+.|..|.||.+| +|++++++++++++... .
T Consensus 158 i~~~~-g~~~~VDa~qs~----g~~~idv~~----~~--~~~ss~~K~lGP~G--~g~l~~~~~~~~~~~~~~~~~~~~~ 224 (355)
T cd00611 158 VPDTG-GVPLVADMSSNI----LSRPIDVSK----FG--VIYAGAQKNLGPAG--VTVVIVRKDLLGKARKITPSMLNYK 224 (355)
T ss_pred ecccC-CCeEEEEccccc----cCCCCCHHH----hC--EEEeecccccCCCc--eEEEEECHHHHhhcccCCCCcccHH
Confidence 44558 999999999875 222222222 12 45566799998776 89999999888764321 0
Q ss_pred -----hcccCCCChHHHHHHHHHHhccCCChH-HHHHHHHHHHHHHHHHHHHhcCCCCCe-ee-CC--CcceEEeEecCC
Q 012095 329 -----SQFTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVK-MS-EP--QGAFYLFIDFST 398 (471)
Q Consensus 329 -----~~~~~~~~~~~q~aa~~~L~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~g~~-~~-~p--~~g~~~~~~~~~ 398 (471)
.....+++....+++.++|+.- .+. .++.+.+++++.++++++.|++++|+. .. .+ ..+..+.+.+++
T Consensus 225 ~~~~~~~~~~Tpn~~~i~~L~aal~~l--~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~~ 302 (355)
T cd00611 225 THADNNSLYNTPPTFAIYMMGLVLKWL--KEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLGK 302 (355)
T ss_pred HHHhcCCCCCCChHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEcCC
Confidence 1112356666777777777741 123 378889999999999999999998862 21 11 222334555543
Q ss_pred ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHH
Q 012095 399 YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKG 461 (471)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~ 461 (471)
. ....++...+.+ .|+...+|.. ..+.||+|+.. +++|++++++.|+++
T Consensus 303 ~-----------~l~~~~~~~~~r-~G~~~~~~~~--~~g~vR~S~~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 303 E-----------ELEKEFLKEAEA-AGMIGLKGHR--SVGGIRASIYNALSLEGVQALADFMKEF 353 (355)
T ss_pred h-----------hhhHHHHHHHHH-CCCcccCCCc--ccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 1 022445455544 5887666653 34789999987 999999999998874
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-16 Score=162.21 Aligned_cols=334 Identities=14% Similarity=0.085 Sum_probs=222.7
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcEEE--eCChHHHHHHHHHHhc--------CC
Q 012095 110 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILV--SNGAKQSILQAVLAVC--------SP 178 (471)
Q Consensus 110 p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~-~~i~i--t~G~~~al~~~~~~l~--------~~ 178 (471)
.+.+.+.+...+.....++.......++.+.+.+++.+.+|.+- + +++.. |+|+|+++..++.+.. ..
T Consensus 54 ~p~~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la~llg~~~-~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~ 132 (431)
T TIGR01788 54 EPEARKLMDETINKNMIDKDEYPQTAEIENRCVNMLADLWHAPA-KDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAA 132 (431)
T ss_pred CHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCC-CCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678888887765433433334456888888899998888531 2 45544 8999999988876542 11
Q ss_pred C-----CeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHH
Q 012095 179 G-----DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 253 (471)
Q Consensus 179 g-----d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i 253 (471)
| -.|++++-.|+++...++..|.+++.+|+++ +++.+|+++|++++++++.+|++...+|.||.+.| +++|
T Consensus 133 g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~d~-~~~~vd~~~L~~~i~~~t~lV~~t~g~t~tG~idp---i~~I 208 (431)
T TIGR01788 133 GKPTDKPNLVMGSNVQVCWEKFARYFDVELREVPMDP-GRYVIDPEQVVEAVDENTIGVVCILGTTYTGEYED---VKAL 208 (431)
T ss_pred CCCCCCcEEEEcCcchHHHHHHHHHcCceeEEEecCC-CceeeCHHHHHHHHhhCCeEEEEEeCCCCCcccCC---HHHH
Confidence 2 3689999999999999999999999999975 44679999999999999998889999999999999 8889
Q ss_pred HHHHHhCC-----CeEEEEccCCCcccc---CCCCccccccCCCCCCceEEEecCCccc-CccchhheeeEcCHH--HHH
Q 012095 254 ARIVAKHP-----RLLVLSDEIYEHIIY---APATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAGPKH--FVA 322 (471)
Q Consensus 254 ~~l~~~~~-----~~~ii~De~y~~~~~---~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~R~G~v~~~~~--~i~ 322 (471)
+++|++++ ++++.+|.+|+.+.. .+.....+. . .+-..+.-|.+|.+ +.. .+|+++..+. +.+
T Consensus 209 ~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~-~---~~~DSis~s~HK~~~~P~--g~G~l~~r~~~~l~~ 282 (431)
T TIGR01788 209 NDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR-L---PRVKSINVSGHKYGLVYP--GVGWVIWRDEEALPE 282 (431)
T ss_pred HHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC-C---CCceEEEECchhccCCCC--CcEEEEEeChHHcch
Confidence 99998872 699999999995431 122111111 1 23335677889986 434 4898887553 323
Q ss_pred HHHHHHhc-------ccCCCChHH-H-HHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC--CcceE
Q 012095 323 ACNKIQSQ-------FTSGASSIS-Q-KAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP--QGAFY 391 (471)
Q Consensus 323 ~l~~~~~~-------~~~~~~~~~-q-~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p--~~g~~ 391 (471)
.+.....+ .+...+... . ......|.. +....++++.++..++.+++.+.|++.+++++..| ..+.
T Consensus 283 ~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~--lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~i- 359 (431)
T TIGR01788 283 ELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLR--LGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPL- 359 (431)
T ss_pred hheecccccCCCCCCcceecCchHHHHHHHHHHHHH--hcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceE-
Confidence 22110000 011111111 1 111222221 13466788888889999999999999988988754 4554
Q ss_pred EeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC---CCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012095 392 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA---FGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~---f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~ 465 (471)
+.+++... + . ...+..++.+.|.++ |+.+..-.. ....-++|+++.. +.+.++++++.|+.++.++
T Consensus 360 V~Fr~~~~-~--~----~~~~~~~l~~~L~~~-G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 360 VAFKLKDD-A--D----PGYTLYDLSHRLRER-GWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred EEEEeCCC-C--C----CCcCHHHHHHHHHHC-CCcccCCCCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 44555421 0 0 002567888887665 876432211 1112368999864 7889999999999988764
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-16 Score=159.59 Aligned_cols=350 Identities=14% Similarity=0.140 Sum_probs=223.2
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCC-CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGF-TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
.|+.+|||..|. ..++. +|.+++|+.+++..-. +.+.. ...+-...+++.+.+....+ ..+.++++++++++.
T Consensus 54 dG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~h~~~~~--~~~e~~v~~ae~L~~~~p~~-~~~~~~f~~sGaeA~ 130 (447)
T COG0160 54 DGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHTRD--LYYEPYVELAEKLTALAPGS-GLKKVFFGNSGAEAV 130 (447)
T ss_pred CCCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhhcccCCc--ccchhHHHHHHHHHHhCCcc-cCCeEEecCCcHHHH
Confidence 688999999965 44444 7999999999887622 22211 22255566666665543321 356899999999999
Q ss_pred HHHHHHhc--CCCCeEEEcCCCCCChHHHH-HHcC-------------CEEEEecCCCC--CCCcC--------CHHHHH
Q 012095 169 LQAVLAVC--SPGDEVIIPAPFWVSYPEMA-RIAD-------------ATPVILPTRIS--ENFLL--------DPKVLE 222 (471)
Q Consensus 169 ~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~-~~~G-------------~~~~~v~~~~~--~~~~l--------d~e~l~ 222 (471)
+.+++... ..+..|+...-+|++-...+ .+.| ..++.+|.... ..|.. ..+.++
T Consensus 131 E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e 210 (447)
T COG0160 131 EAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIE 210 (447)
T ss_pred HHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHH
Confidence 99988652 23367888888887654332 2211 12444554321 11211 234455
Q ss_pred hhhc------cCCcEEEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceE
Q 012095 223 SKLT------EKSRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 295 (471)
Q Consensus 223 ~~l~------~~~~~i~i~~p~NPtG-~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i 295 (471)
..+. .++.++++...+.-.| .+.|++.++++.++|++| |+++|.||++.++--.|. ...+... +-.-
T Consensus 211 ~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~-gillI~DEVQtG~GRTG~-~fa~E~~----gv~P 284 (447)
T COG0160 211 RALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREH-GILLIADEVQTGFGRTGK-MFAFEHF----GVEP 284 (447)
T ss_pred HHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcccc-chhhhhc----CCCC
Confidence 5342 1455666666677777 577888899999999999 999999999998755542 2222222 2122
Q ss_pred EEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHh
Q 012095 296 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF 375 (471)
Q Consensus 296 ~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L 375 (471)
-+-++||.+| .|+.+|.+++.+++.+ ...-....+++.|+++.+++.+.|+.- +-+.+.++.++.-+++.+.|
T Consensus 285 Divt~aK~ig-~G~Pl~avv~r~ei~~-~~~g~~~~Tf~GNpva~Aaa~AvL~vi-----e~e~L~~~a~~~G~~l~~~L 357 (447)
T COG0160 285 DIVTLAKSLG-GGLPLSAVVGRAEIMD-WPPGGHGGTFGGNPVACAAALAVLDVI-----EEENLLERAAELGEYLRDRL 357 (447)
T ss_pred CEEEeccccc-CCCceeEEeccHHhcc-cCCcccCCCCCcCHHHHHHHHHHHHHH-----HHccHHHHHHHHHHHHHHHH
Confidence 2556899999 6999999999999998 443344456889999999999999841 11244444444455555555
Q ss_pred cCC----CCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHH
Q 012095 376 GEL----EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLT 449 (471)
Q Consensus 376 ~~~----~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e 449 (471)
.++ |-+--+. .-|+++-+.+-...+..... ......++++++++ |+.+..+..+ .+.|||.... +++
T Consensus 358 ~~l~~~~~~IgdVR-G~Glm~giE~v~d~~t~~p~---~~~~~~i~~~~~~~-Glil~~~G~~--~nviRi~PPL~is~e 430 (447)
T COG0160 358 EELQEKHPLIGDVR-GLGLMIGVELVKDRDTKEPD---AELAAKIVARAFER-GLLLLTCGPH--GNVLRILPPLTISDE 430 (447)
T ss_pred HHHHhhcCceeccc-ccceEEEEEEecCCCCCCCC---HHHHHHHHHHHHHc-CCEEeccCCC--CcEEEEeCCcccCHH
Confidence 443 2111112 22555666664321100000 01346778888877 8877765533 4689998876 999
Q ss_pred HHHHHHHHHHHHHHhh
Q 012095 450 TLQAAVERIKKGLLTL 465 (471)
Q Consensus 450 ~i~~~~~~l~~~l~~~ 465 (471)
+++++++.|.+++++.
T Consensus 431 ~~d~~l~il~~al~~~ 446 (447)
T COG0160 431 ELDEGLDILEEALKEA 446 (447)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999999764
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-16 Score=162.29 Aligned_cols=357 Identities=16% Similarity=0.116 Sum_probs=212.1
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.+||+..|. ..++. ++.+.+++.+++.+... ++.. ...+....+++.+.+..+ ..+.++++++++++..
T Consensus 45 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-~~~~-~~~~~~~~lae~l~~~~~---~~~~v~f~~sGseA~e 119 (451)
T PRK07678 45 QGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLSY-FPLT-QSHEPAIKLAEKLNEWLG---GEYVIFFSNSGSEANE 119 (451)
T ss_pred CCCEEEEccccHHhhcCCCCCHHHHHHHHHHHHhcCc-cccc-cCCHHHHHHHHHHHHhCC---CCCEEEEeCCcHHHHH
Confidence 688899998886 33444 78899999998876321 1111 123445566666665543 2358999999999999
Q ss_pred HHHHHhcC-------CC-CeEEEcCCCCCChHHHHHHc-CC------------EEEEecCCCCCC--Cc-----CC---H
Q 012095 170 QAVLAVCS-------PG-DEVIIPAPFWVSYPEMARIA-DA------------TPVILPTRISEN--FL-----LD---P 218 (471)
Q Consensus 170 ~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~-G~------------~~~~v~~~~~~~--~~-----ld---~ 218 (471)
.+++.... +| ..|+....+|++....+... |. .+..+|...... +. .+ +
T Consensus 120 ~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (451)
T PRK07678 120 TAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECV 199 (451)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHHHHHHHH
Confidence 88886521 33 57888888888866443322 11 112222211000 00 01 2
Q ss_pred HHHHhhhc----cCCcEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCc
Q 012095 219 KVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 293 (471)
Q Consensus 219 e~l~~~l~----~~~~~i~i~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~ 293 (471)
+.+++.+. ++..+|++...+.-.|. ..+++.++++.++|++| |+++|.||++..|-..|.. ..+....-..|
T Consensus 200 ~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~-g~llI~DEV~tGfGRtG~~-~~~~~~gv~PD- 276 (451)
T PRK07678 200 KEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKH-GALLISDEVICGFGRTGKA-FGFMNYGVKPD- 276 (451)
T ss_pred HHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEeehhhcCCcCchh-HHHHhcCCCCC-
Confidence 23555553 23455555433444564 56888999999999999 9999999999876333321 11111111112
Q ss_pred eEEEecCCcccCccc-hhheeeEcCHHHHHHHHH------HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 012095 294 TLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366 (471)
Q Consensus 294 ~i~~~S~SK~~g~~G-~R~G~v~~~~~~i~~l~~------~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~ 366 (471)
+-+|+|.+| .| +.+|.+++++++++.+.. +....+++.++++.+++.+.|+.-.. ++.+++..+.-+.
T Consensus 277 ---ivt~gK~lg-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~-~~~~~~~~~~g~~ 351 (451)
T PRK07678 277 ---IITMAKGIT-SAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMEN-ENLIERSAQLGEL 351 (451)
T ss_pred ---EEEeecccc-cCCcceeEEEEcHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHH
Confidence 346899998 77 699999999999988753 12346778899999999998875211 1223333332233
Q ss_pred HHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC--CCCCcEEEEe
Q 012095 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF--GDDTCIRISY 444 (471)
Q Consensus 367 ~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f--~~~~~iRis~ 444 (471)
.++.+.+.+.+.+-+.-+...|-| +-+.+.......... .......+...|+++ ||++.+.... +..+.+|++.
T Consensus 352 l~~~l~~~~~~~~~v~~vrg~Gl~-~~i~~~~~~~~~~~~--~~~~a~~i~~~l~~~-Gv~~~~~g~~v~~~~~~lrl~P 427 (451)
T PRK07678 352 LLEQLKEELGEHPLVGDIRGKGLL-VGIELVNDKETKEPA--DNDKVASVVAACKEK-GLIIGKNGDTVAGYNNVLTLSP 427 (451)
T ss_pred HHHHHHHHHhcCCCEEEEEeeceE-EEEEEecCCcccCcC--chHHHHHHHHHHHHC-CcEEeecCccccCCCCEEEEEC
Confidence 333343444444322223334433 444553210000000 001235677777776 9998764221 2236799987
Q ss_pred ec--CHHHHHHHHHHHHHHHHhhC
Q 012095 445 AA--SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 445 ~~--~~e~i~~~~~~l~~~l~~~~ 466 (471)
.. ++++|++++++|.+++++++
T Consensus 428 pl~it~~eid~~~~~l~~~l~~~~ 451 (451)
T PRK07678 428 PLVISSEEIAFIVGTLKTALERIK 451 (451)
T ss_pred CCcCCHHHHHHHHHHHHHHHHhcC
Confidence 76 99999999999999998764
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-16 Score=159.70 Aligned_cols=347 Identities=15% Similarity=0.129 Sum_probs=212.3
Q ss_pred hcCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+.+||+..|.. .++. ++.+.+++.+++.+..... ...-..+....+++.+.+..+.. ..+.++++++++++.
T Consensus 51 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~-~~~~~~~~~~~lAe~L~~~~p~~-~~~~v~f~~SGsEA~ 128 (441)
T PRK05769 51 VDGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYS-LTDFYYEPAVELAERLVEIAPGG-FEKKVFFTNSGTESN 128 (441)
T ss_pred CCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccCcc-CcccCCHHHHHHHHHHHHhCCCC-CCCEEEECCchHHHH
Confidence 36888999988863 3444 6889999999987633211 11112355666777776544311 136899999999999
Q ss_pred HHHHHHhc-CCC-CeEEEcCCCCCChHHHHHHc-CC-------------EEEEecCCCCCC--Cc-C--------CHHHH
Q 012095 169 LQAVLAVC-SPG-DEVIIPAPFWVSYPEMARIA-DA-------------TPVILPTRISEN--FL-L--------DPKVL 221 (471)
Q Consensus 169 ~~~~~~l~-~~g-d~Vlv~~p~y~~~~~~~~~~-G~-------------~~~~v~~~~~~~--~~-l--------d~e~l 221 (471)
..+++... -.| +.|+..+.+|++....+... |. .+..++....-. |+ - +++.+
T Consensus 129 e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 208 (441)
T PRK05769 129 EAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFI 208 (441)
T ss_pred HHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHH
Confidence 98888642 123 67888888888876443322 21 122333211000 00 0 12345
Q ss_pred Hh-hhc-----cCCcEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCce
Q 012095 222 ES-KLT-----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 294 (471)
Q Consensus 222 ~~-~l~-----~~~~~i~i~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~ 294 (471)
++ .++ ++..+|++...+...|. ..+++.+++|.++|++| |+++|.||++..+...|.. ..+....-..|
T Consensus 209 e~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~-g~lli~DEv~tG~gr~G~~-~a~~~~gv~pD-- 284 (441)
T PRK05769 209 EDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKY-GILLIDDEVQTGMGRTGKM-FAIEHFGVEPD-- 284 (441)
T ss_pred HHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcccce-ehhhccCCCCC--
Confidence 55 222 23445555444555676 45688999999999999 9999999999976443321 11111211112
Q ss_pred EEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHH
Q 012095 295 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 374 (471)
Q Consensus 295 i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~ 374 (471)
++ +|||.++ .|+++|++++++++++.+.. ....+++.+++++.++.++|+. .++ ++.+..+++-+++.+.
T Consensus 285 iv--t~~K~l~-~G~p~gav~~~~~i~~~~~~-~~~~T~~g~p~~~aaa~a~L~~---l~~---~~~~~~~~~g~~l~~~ 354 (441)
T PRK05769 285 II--TLAKAIA-GGLPLGAVIGRAELMFLPPG-SHANTFGGNPVAAAAALATLEE---LEE---GLLENAQKLGEYLRKE 354 (441)
T ss_pred EE--EEccccc-CCcccEEEEEehhhhhcCCC-CCCCCCCcCHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHHH
Confidence 32 5899998 89999999999998754322 2234556789999999998875 122 4555666666666666
Q ss_pred hcCC----CCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CH
Q 012095 375 FGEL----EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SL 448 (471)
Q Consensus 375 L~~~----~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~ 448 (471)
|+++ +-+.-.... |.++-+.+.+... +. .......+.+.++++ ||++.+.. .+.+|++... ++
T Consensus 355 L~~l~~~~~~~~~vrg~-G~~~~i~~~~~~~---~~--~~~~~~~~~~~~~~~-Gil~~~~~----~~~lr~~p~l~~t~ 423 (441)
T PRK05769 355 LKELKEKYEFIGDVRGL-GLMIGVELVKDRK---EP--DPKLRDKVLYEAFKR-GLLLLGAG----KSAIRIIPPLIITE 423 (441)
T ss_pred HHHHHHhCCCeeeeecc-eEEEEEEeccCCc---cc--cHHHHHHHHHHHHhC-CcEEecCC----CCEEEEeCCCCCCH
Confidence 6543 211112222 4445555532100 00 000234567777765 99987632 3578998776 99
Q ss_pred HHHHHHHHHHHHHHHhh
Q 012095 449 TTLQAAVERIKKGLLTL 465 (471)
Q Consensus 449 e~i~~~~~~l~~~l~~~ 465 (471)
++|++++++|.++++++
T Consensus 424 ~~id~~~~~l~~~l~~~ 440 (441)
T PRK05769 424 EEADIGLEILEEAIKEL 440 (441)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998764
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-16 Score=160.94 Aligned_cols=336 Identities=16% Similarity=0.106 Sum_probs=204.5
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCC-CC------CCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEE---eCChH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGF-TR------YTPNAGTLELRSAICHKLKEENGLSYTPDQILV---SNGAK 165 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~-~~------Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~i---t~G~~ 165 (471)
..|.|-..++.. ++.+.+++...+.+.. .+ |+......++.+...+...+.++. ..+.+++ .++++
T Consensus 35 ~~l~liasen~~--s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~--~~~~~~~nv~~~SG~ 110 (475)
T PLN03226 35 KGLELIASENFT--SRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRL--DPEKWGVNVQPLSGS 110 (475)
T ss_pred cCeeEecCCccC--CHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCC--CcceeEEecCcCchH
Confidence 467787777653 5678888887774321 22 222222333433333344455653 3334433 25566
Q ss_pred HHHHHHHHHhcCCCCeEEEcCC---CCCChHH---HHHHcCCEEE----EecCCCCCCCcCCHHHHHhhhc-cCCcEEEE
Q 012095 166 QSILQAVLAVCSPGDEVIIPAP---FWVSYPE---MARIADATPV----ILPTRISENFLLDPKVLESKLT-EKSRLLIL 234 (471)
Q Consensus 166 ~al~~~~~~l~~~gd~Vlv~~p---~y~~~~~---~~~~~G~~~~----~v~~~~~~~~~ld~e~l~~~l~-~~~~~i~i 234 (471)
.+...++.++++|||.|+..+. .|.++.. ..+..+.... .+.++. ++..+|+++|++.+. .++++|++
T Consensus 111 ~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~-~~g~iD~d~Le~~l~~~~pklIv~ 189 (475)
T PLN03226 111 PANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDE-STGLIDYDKLEKKAMLFRPKLIIA 189 (475)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecC-CCCCcCHHHHHHHHhhcCCeEEEE
Confidence 6777789999999999998553 2222211 1122222222 344443 345699999999886 46776655
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCccc-Cccchhhee
Q 012095 235 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGY 313 (471)
Q Consensus 235 ~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~R~G~ 313 (471)
..++ +|...+ +++|.++|+++ ++++++|++|..........++. + ....++++|++|++ |..| |+
T Consensus 190 -~~S~-~s~~~D---~a~i~~ia~~~-ga~LlvD~AH~~Gli~~~~~~~p--~---~~~Div~~t~hK~L~GP~G---g~ 255 (475)
T PLN03226 190 -GASA-YPRDWD---YARMRKIADKV-GALLMCDMAHISGLVAAQEAASP--F---EYCDVVTTTTHKSLRGPRG---GM 255 (475)
T ss_pred -ecCc-CCCccC---HHHHHHHHHHc-CCEEEEEchhhhCcccCCCCCCC--C---CCCeEEEecCcccccCCCc---eE
Confidence 3334 677888 77899999999 99999999998655433222211 1 13448899999998 4444 99
Q ss_pred eEcCHHHH-----------HHHHHHH---h-cccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCC
Q 012095 314 IAGPKHFV-----------AACNKIQ---S-QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL 378 (471)
Q Consensus 314 v~~~~~~i-----------~~l~~~~---~-~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 378 (471)
++++++++ +....+. . .+..+++.....++.++|+.-. ....++..++..++.+++.+.|.+.
T Consensus 256 I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~--~~~~~~~~~~~~~na~~L~~~L~~~ 333 (475)
T PLN03226 256 IFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAM--TPEFKAYQKQVKANAAALANRLMSK 333 (475)
T ss_pred EEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHh--CcCHHHHHHHHHHHHHHHHHHHHhC
Confidence 98887654 2211111 1 1233344444444455565411 1224566788889999999999885
Q ss_pred CCCeeeCCC-cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC-----CCCcEEEEe------ec
Q 012095 379 EGVKMSEPQ-GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-----DDTCIRISY------AA 446 (471)
Q Consensus 379 ~g~~~~~p~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~-----~~~~iRis~------~~ 446 (471)
|+.+..+. .+..+++++... + .+..++.+. +++.||.+..+..++ .+..+|+.. +.
T Consensus 334 -G~~l~~~~t~~hi~lv~~~~~-g---------i~~~~~~~~-L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~ 401 (475)
T PLN03226 334 -GYKLVTGGTDNHLVLWDLRPL-G---------LTGSRVEKV-LDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGL 401 (475)
T ss_pred -CCEEEcCCCCCCEEEEEccCC-C---------CCHHHHHHH-HHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCC
Confidence 98887532 245567777321 1 155556665 556799998765332 235688843 23
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 012095 447 SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 447 ~~e~i~~~~~~l~~~l~~ 464 (471)
++++++++.+.|.++++.
T Consensus 402 ~~~d~~~ia~~i~~~~~~ 419 (475)
T PLN03226 402 VEKDFEKVAEFLHRAVTI 419 (475)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 789999999999998873
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-16 Score=163.07 Aligned_cols=351 Identities=11% Similarity=0.049 Sum_probs=211.3
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+++||+..|. ..++. +|.+.+++.+++.+.....+...+..+....+++.+.+.+.. ...+.++++++++++..
T Consensus 87 dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~-~~~~~v~f~~SGsEA~e 165 (504)
T PLN02760 87 NGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHSFWNRTTKPSLDLAKELLEMFTA-RKMGKVFFTNSGSEAND 165 (504)
T ss_pred CCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhccceecccccCcHHHHHHHHHHHhhcCC-CCCCEEEEeCChHHHHH
Confidence 688999999875 44444 788999999998763221111123456677777777654321 12357999999999999
Q ss_pred HHHHHhc-------CCC-CeEEEcCCCCCChHHH-HHHcCCE------------EEEecCCCCCCCc-------------
Q 012095 170 QAVLAVC-------SPG-DEVIIPAPFWVSYPEM-ARIADAT------------PVILPTRISENFL------------- 215 (471)
Q Consensus 170 ~~~~~l~-------~~g-d~Vlv~~p~y~~~~~~-~~~~G~~------------~~~v~~~~~~~~~------------- 215 (471)
.+++... .++ +.|+..+-+|++.... +...|.. +..++.+ +.|.
T Consensus 166 ~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~ 243 (504)
T PLN02760 166 TQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCP--HYWRFHLPGETEEEFST 243 (504)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCC--cccccCCCCCcHHHHHH
Confidence 9988763 233 5688888888776432 2323321 1112211 0010
Q ss_pred CCHHHHHhhhc----cCCcEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCC
Q 012095 216 LDPKVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 290 (471)
Q Consensus 216 ld~e~l~~~l~----~~~~~i~i~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~ 290 (471)
...+++++.+. ++..+|++...+.-.|. ..+++.+++|.++|++| |+++|.||++..|--.|.. .......-
T Consensus 244 ~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~-g~lLI~DEV~TGfGRtG~~-~a~e~~gv- 320 (504)
T PLN02760 244 RLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKY-DILFIADEVICAFGRLGTM-FGCDKYNI- 320 (504)
T ss_pred HHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEecchhhCCcccchh-hHHHhcCC-
Confidence 01244666553 23445555444555675 55788999999999999 9999999999766322221 11111111
Q ss_pred CCceEEEecCCcccCccc-hhheeeEcCHHHHHHHHHH-------HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHH
Q 012095 291 WERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 362 (471)
Q Consensus 291 ~~~~i~~~S~SK~~g~~G-~R~G~v~~~~~~i~~l~~~-------~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~ 362 (471)
.--+.+|+|.+| .| +.+|.+++++++++.+... ....+++.++++.+++.+.|+.- ++ +++.+
T Consensus 321 ---~PDivtlgK~lg-gG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i---~~--~~l~~ 391 (504)
T PLN02760 321 ---KPDLVSLAKALS-SAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIY---KE--RNIPE 391 (504)
T ss_pred ---CCcEEEeccccc-CCccccceEeecHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHH---Hh--CCHHH
Confidence 112567899997 66 4899999999999887531 23457778999999999988752 11 12334
Q ss_pred HHHHHHHHHHHHhcC---CCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCc
Q 012095 363 AFRERRDFLVKSFGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTC 439 (471)
Q Consensus 363 ~~~~~r~~l~~~L~~---~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~ 439 (471)
+.+++-+++.+.|++ .+-+.-+... |.++-+.+.+.................+.+.++++ ||.+.+.. +.
T Consensus 392 ~~~~~g~~l~~~L~~l~~~~~v~~vrG~-Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~-Gvl~~~~g-----~~ 464 (504)
T PLN02760 392 HVNKIAPRFQDGIKAFSGSPIIGEIRGT-GLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKR-GMLVRVAG-----DN 464 (504)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeeeEEeC-ceEEEEEEecCCcccccccchhHHHHHHHHHHHhC-CcEEEecC-----CE
Confidence 444444444444443 3222222233 34455555321100000000000134577777765 99987732 46
Q ss_pred EEEEee--cCHHHHHHHHHHHHHHHHhh
Q 012095 440 IRISYA--ASLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 440 iRis~~--~~~e~i~~~~~~l~~~l~~~ 465 (471)
+|++.. .++++|++++++|.++++++
T Consensus 465 lrl~Ppl~it~eeid~~~~~l~~al~~~ 492 (504)
T PLN02760 465 IMMSPPLIITPEEVDELISIYGKALKAT 492 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 899966 59999999999999998765
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-16 Score=161.15 Aligned_cols=345 Identities=15% Similarity=0.196 Sum_probs=210.6
Q ss_pred hcCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+.+||+..|.. .++. +|.+.+++.+++.+....+.+ .+....+++.+.+..+ ..+.+.++++++++.
T Consensus 50 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~----~~~~~~la~~l~~~~p---~~~~v~f~~sGseA~ 122 (428)
T PRK12389 50 VDGNKYIDYLAAYGPIITGHAHPHITKAITEAAENGVLYGTP----TELEIEFAKMLKEAIP---SLEKVRFVNSGTEAV 122 (428)
T ss_pred CCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCccCCC----CHHHHHHHHHHHHhCC---CCcEEEEeCCHHHHH
Confidence 46888999988863 3443 688999999998764332212 2445566666654433 246899999999999
Q ss_pred HHHHHHhcC-CC-CeEEEcCCCCCChHHHHHH-cCCEEEE--------ecCC-CCC----CCcCCHHHHHhhhcc---CC
Q 012095 169 LQAVLAVCS-PG-DEVIIPAPFWVSYPEMARI-ADATPVI--------LPTR-ISE----NFLLDPKVLESKLTE---KS 229 (471)
Q Consensus 169 ~~~~~~l~~-~g-d~Vlv~~p~y~~~~~~~~~-~G~~~~~--------v~~~-~~~----~~~ld~e~l~~~l~~---~~ 229 (471)
..+++.... .| ..|+...-+|++....+.. .|..... ++.. ..+ .+ .|++.+++.+.. +.
T Consensus 123 e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~l~~~~~~v 201 (428)
T PRK12389 123 MTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPF-NDIEALKEALDKWGDEV 201 (428)
T ss_pred HHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCC-CCHHHHHHHHHhcCCcE
Confidence 988886532 33 6788888888886644332 2211110 0000 000 01 278888888852 34
Q ss_pred cEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccc
Q 012095 230 RLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 308 (471)
Q Consensus 230 ~~i~i~~p~NPtG~~-~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 308 (471)
.+|++...+...|.. .+++.+++|.++|++| |+++|.||++..+..+.........+.+ | +-+|+|.+| .|
T Consensus 202 aavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~-g~llI~DEV~tG~Rt~~~~a~~~~gv~P--D----ivt~gK~lg-gG 273 (428)
T PRK12389 202 AAVLVEPIVGNFGIVEPKPGFLEAVNELAHEA-GALVIYDEVITAFRFMYGGAQDLLGVEP--D----LTALGKIIG-GG 273 (428)
T ss_pred EEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEEccccccccCcchhhHHhCCCC--C----eeeechhhc-CC
Confidence 455555446667754 5788999999999999 9999999999976321110111112221 2 347899998 88
Q ss_pred hhheeeEcCHHHHHHHHH---HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC----CCC-
Q 012095 309 WRLGYIAGPKHFVAACNK---IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE----LEG- 380 (471)
Q Consensus 309 ~R~G~v~~~~~~i~~l~~---~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~----~~g- 380 (471)
+.+|.+++++++++.+.. .....+++.++++.+++.+.|+.-.. ++ +.++.+++-+++.+.|++ .+-
T Consensus 274 ~Pi~av~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~-~~----l~~~~~~~g~~l~~~L~~l~~~~~~~ 348 (428)
T PRK12389 274 LPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQ-EG----VYEKLDRLGAMLEEGILEAAEKHGIT 348 (428)
T ss_pred CceeEEeEHHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhc-cc----HHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999988752 12234667899999999888875211 22 333344444444444443 321
Q ss_pred CeeeCCCcceEEeEecCCccCCccc--CCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHH
Q 012095 381 VKMSEPQGAFYLFIDFSTYYGSEAE--GFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERI 458 (471)
Q Consensus 381 ~~~~~p~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l 458 (471)
+.+.... |++ -+.+......... ..........+.+.|+++ ||++.+.. .+.+.+++..++++|+++++++
T Consensus 349 ~~v~r~~-g~~-gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~----~~~~~~~l~~t~e~id~~~~~l 421 (428)
T PRK12389 349 ITINRLK-GAL-TVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQ-GINLAPSK----YEAWFLTTAHTEEDIEETLEAV 421 (428)
T ss_pred EEEEecC-cEE-EEEEeCCCCCChhhhcccCHHHHHHHHHHHHHC-CcEeecCC----CCCeeecCCCCHHHHHHHHHHH
Confidence 2232333 343 2333211000000 000000134677777765 99998852 1235677777999999999999
Q ss_pred HHHHHh
Q 012095 459 KKGLLT 464 (471)
Q Consensus 459 ~~~l~~ 464 (471)
++++++
T Consensus 422 ~~~l~~ 427 (428)
T PRK12389 422 DRAFAQ 427 (428)
T ss_pred HHHHHh
Confidence 999865
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.2e-17 Score=160.73 Aligned_cols=324 Identities=14% Similarity=0.103 Sum_probs=210.4
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.++|+..|. ..++. +|.+.+++.+++.+.. .+++. -..+....+++.+.+..+ .+.+++++++++++.
T Consensus 22 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~-~~~~~-~~~~~~~~la~~l~~~~~----~~~v~~~~SGseA~e 95 (364)
T PRK04013 22 QGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLV-VAGPM-FEHEEKEEMLEELSKWVN----YEYVYMGNSGTEAVE 95 (364)
T ss_pred CCCEEEEcccChhhccCCCCCHHHHHHHHHHHHhcC-CccCC-cCCHHHHHHHHHHHhhcC----CCEEEEeCchHHHHH
Confidence 678899998875 34444 6788899999987632 22221 123445556666654433 358999999999999
Q ss_pred HHHHHhc-CCC-CeEEEcCCCCCChHHHHHHc--------CCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCC
Q 012095 170 QAVLAVC-SPG-DEVIIPAPFWVSYPEMARIA--------DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSN 239 (471)
Q Consensus 170 ~~~~~l~-~~g-d~Vlv~~p~y~~~~~~~~~~--------G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~N 239 (471)
.+++... .+| +.|+..+.+|++....+... +..+....+.. -.| .|++.+++.+.+++++|++...+.
T Consensus 96 ~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~-~~~-~d~~~l~~~i~~~~aAvivEpi~g 173 (364)
T PRK04013 96 AALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKH-IPF-NDVEAAKEAITKETAAVIFEPIQG 173 (364)
T ss_pred HHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEE-ecC-CCHHHHHHHhcCCcEEEEEcCCcC
Confidence 9988753 345 88999999998865443321 11110000000 012 278889998887888888766665
Q ss_pred Cccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCC-ccccccCCCCCCceEEEecCCcccCccchhheeeEcC
Q 012095 240 PTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT-HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 317 (471)
Q Consensus 240 PtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~ 317 (471)
..|. ..+++.+++|.++|++| |+++|+||++..+ ..|.. ......+.+ | +-+|+|.+| .|+.+|.++.+
T Consensus 174 ~gG~~~~~~~yl~~lr~lc~~~-gillI~DEv~tG~-RtG~~~a~~~~gv~P--D----iv~~gK~lg-gG~P~~a~~~~ 244 (364)
T PRK04013 174 EGGIVPAKEEFVKTLRDLTEDV-GALLIADEVQSGL-RTGKFLAIEHYKVEP--D----IVTMGKGIG-NGVPVSLTLTN 244 (364)
T ss_pred CCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhcC-CCCchhHHHhcCCCC--C----EEEeccccc-CCceeEEEEec
Confidence 5564 56788999999999999 9999999999977 33321 111122222 2 445789998 78999999988
Q ss_pred HHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecC
Q 012095 318 KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS 397 (471)
Q Consensus 318 ~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~ 397 (471)
.++.. .....+++.++++.+++.+.|+.-.. ++.+++..+. + ..+.. +-+.-.... |.++-+.+.
T Consensus 245 ~~~~~----~~~~~T~~gnp~~~aaa~a~l~~i~~-~~l~~~~~~~-------l-~~l~~-~~v~~vRG~-Gl~~gve~~ 309 (364)
T PRK04013 245 FDVER----GKHGSTFGGNPLACKAVAVTLRILRR-ERLVEKAGEK-------F-IEIKG-ERVVTTRGR-GLMIGIVLK 309 (364)
T ss_pred ccccC----CCcCCCCCcCHHHHHHHHHHHHHHHh-ccHHHHHHHH-------H-HHhcc-CcceeeeeC-cEEEEEEeC
Confidence 76521 23445778899999999988875211 1222222221 2 22222 222212223 555666664
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012095 398 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~~ 466 (471)
. ....+.+.++++ ||++.+.. .+.+|+.... +++++++++++|++++.++.
T Consensus 310 ~-------------~~~~i~~~~~~~-Gll~~~~g----~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~~~ 362 (364)
T PRK04013 310 K-------------PVGKYVEELQNR-GYLVHTAG----QRVIRLLPPLIISKDTMEEAKSAIEGVINDIL 362 (364)
T ss_pred C-------------cHHHHHHHHHhC-CcEEeeCC----CCEEEEeCCcccCHHHHHHHHHHHHHHHHHHh
Confidence 2 345788888775 89987632 3679998775 99999999999999998754
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.8e-16 Score=160.35 Aligned_cols=352 Identities=12% Similarity=0.070 Sum_probs=211.9
Q ss_pred hcCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHH
Q 012095 92 QAGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPN-AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (471)
Q Consensus 92 ~~g~~~i~l~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~-~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~a 167 (471)
..|+.+||+..|.. .++. ++.+.+++.+++.+..+ +... ....+.+..+++.+.+.... ..+.++++++++++
T Consensus 47 ~dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~~~-~~~~~~~~~~~~~~lAe~L~~~~p~--~~~~v~f~~sGSEA 123 (461)
T PRK07482 47 AQGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKELAY-YHTYVGHGTEASITLSKRIIDRAPA--GMSKVYYGLSGSDA 123 (461)
T ss_pred CCCCEEEEcccchhhhcCCCCCHHHHHHHHHHHHhcCc-cccccccCCHHHHHHHHHHHHhCCC--CcCEEEEeCchHHH
Confidence 36889999998874 3333 78899999999876321 1111 12346667777777654431 34689999999999
Q ss_pred HHHHHHHhc------C-CC-CeEEEcCCCCCChHHHHHHcCC-------------EEEEecCCCCCCC---c--------
Q 012095 168 ILQAVLAVC------S-PG-DEVIIPAPFWVSYPEMARIADA-------------TPVILPTRISENF---L-------- 215 (471)
Q Consensus 168 l~~~~~~l~------~-~g-d~Vlv~~p~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~---~-------- 215 (471)
+..+++... . ++ ..|+....+|++....+..... .+..++....... .
T Consensus 124 ve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 203 (461)
T PRK07482 124 NETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSA 203 (461)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHH
Confidence 999988763 1 23 5688888889886533222111 1122221110000 0
Q ss_pred CCHHHHHhhhc----cCCcEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCc-cccccCCC
Q 012095 216 LDPKVLESKLT----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPG 289 (471)
Q Consensus 216 ld~e~l~~~l~----~~~~~i~i~~p~NPtG~~-~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~~ 289 (471)
-+++.+++.+. ++..+|++...+.-.|.. .+++.+++|.++|++| |+++|.||++..|--.|... .....+.+
T Consensus 204 ~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~-giLlI~DEV~tGfGRtG~~~a~~~~gv~P 282 (461)
T PRK07482 204 YCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKY-DILLIADEVVTGFGRLGSMFGSDHYGIEP 282 (461)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHh-CCEEEEeccccCCCcCcchhhHHhcCCCC
Confidence 03567777773 234455554335445655 6788999999999999 99999999999873323211 11111211
Q ss_pred CCCceEEEecCCcccCccch-hheeeEcCHHHHHHHHH-------HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHH
Q 012095 290 MWERTLTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNK-------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 361 (471)
Q Consensus 290 ~~~~~i~~~S~SK~~g~~G~-R~G~v~~~~~~i~~l~~-------~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~ 361 (471)
| +-+++|.++ .|. .+|.+++.+++.+.+.. .....+++.++++.+++.+.|+.-.. ++ +.
T Consensus 283 --D----iv~~gKgl~-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~-~~----l~ 350 (461)
T PRK07482 283 --D----LITVAKGLT-SAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILER-EN----LV 350 (461)
T ss_pred --C----EEEEccccc-cCccccceeeecHHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHh-CC----HH
Confidence 2 334789998 785 89999999998887752 12335677899999999998874111 12 22
Q ss_pred HHHHHHHHHHHHHhc----CCCCCeeeCCCcceEEeEecCCccCCcccCCCC-CCCHHHHHHHHHHcCCEEEECCCCCCC
Q 012095 362 KAFRERRDFLVKSFG----ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK-IENSESLCRYLLDKAQVALVPGDAFGD 436 (471)
Q Consensus 362 ~~~~~~r~~l~~~L~----~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~Ll~~~gV~v~pg~~f~~ 436 (471)
+..++.-+++.+.|+ +.+-+.-+... |.++.+.+..... ....+.. ......++..|+++ ||++.++. .
T Consensus 351 ~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~-Glm~giel~~~~~-~~~~~~~~~~~~~~i~~~~~~~-Gvl~~~~~---~ 424 (461)
T PRK07482 351 GNAAEVGAYFRARLRAAFGDHPLVGEVRGV-GMLAAVEFVADRD-DRTPFDPALKIGPQVSAAALER-GVIARAMP---H 424 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEEeec-eeEEEEEeccCCC-cCCCCChhhHHHHHHHHHHHHC-CcEEecCC---C
Confidence 333334444444443 34322223333 4445556532100 0000000 00134677888875 89886532 1
Q ss_pred CCcEEEEee--cCHHHHHHHHHHHHHHHHhh
Q 012095 437 DTCIRISYA--ASLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 437 ~~~iRis~~--~~~e~i~~~~~~l~~~l~~~ 465 (471)
.+.+|+... .++++|++++++|.++++++
T Consensus 425 ~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~ 455 (461)
T PRK07482 425 GDILGFAPPLVLTRAEADEIVAIAKDAVDEV 455 (461)
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 256888744 49999999999999999764
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-16 Score=161.31 Aligned_cols=358 Identities=13% Similarity=0.101 Sum_probs=214.7
Q ss_pred hcCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+.+||+..|.. .++. ++.+.+|+.+++.+.........-..+.+..+++.+.+.... ..+.++++++++++.
T Consensus 43 ~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~--~~~~v~f~~sGSEAv 120 (459)
T PRK05965 43 ASGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYATGYFHFGSEPAIRLAAKLAERAPG--SLNHVYFTLGGSDAV 120 (459)
T ss_pred CCCCEEEECcccHHhccCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHhhCCC--CcCEEEEeCChhHHH
Confidence 36888999988763 3333 788999999998763221110011234555677766654321 346899999999999
Q ss_pred HHHHHHhcC-------CC-CeEEEcCCCCCChHHHHHH-cCC------------EEEEecCCCC--CCCcCC--------
Q 012095 169 LQAVLAVCS-------PG-DEVIIPAPFWVSYPEMARI-ADA------------TPVILPTRIS--ENFLLD-------- 217 (471)
Q Consensus 169 ~~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~-~G~------------~~~~v~~~~~--~~~~ld-------- 217 (471)
..+++.... ++ ..|+..+.+|++....+.. .|. .+..++.... ..+.-|
T Consensus 121 e~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (459)
T PRK05965 121 DSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAAS 200 (459)
T ss_pred HHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHH
Confidence 998886431 33 5688889899886533222 111 1122222110 001113
Q ss_pred HHHHHhhhc----cCCcEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCC
Q 012095 218 PKVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292 (471)
Q Consensus 218 ~e~l~~~l~----~~~~~i~i~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 292 (471)
++.+++.+. ++..+|++...+.-.|. +.+++.+++|.++|++| |+++|.||+...|--.|.. .......-..|
T Consensus 201 ~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~-gillI~DEV~tGfGRtG~~-~a~~~~gv~PD 278 (459)
T PRK05965 201 VAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACREL-GILFVADEVITGFGRTGPL-FACEAEGVVPD 278 (459)
T ss_pred HHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhccCccCchh-hhHhhcCCCCC
Confidence 256777664 23455555444555665 56888999999999999 9999999999987333321 11111111111
Q ss_pred ceEEEecCCcccCccc-hhheeeEcCHHHHHHHHH-------HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHH
Q 012095 293 RTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK-------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364 (471)
Q Consensus 293 ~~i~~~S~SK~~g~~G-~R~G~v~~~~~~i~~l~~-------~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~ 364 (471)
+-+|+|.++ .| +.+|.+++++++.+.+.. .....+++.++++.+++.+.|+.- + -+++.+..
T Consensus 279 ----iv~~gKgl~-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l---~--~~~l~~~~ 348 (459)
T PRK05965 279 ----LMTVAKGLT-SGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLY---H--EGGLLANG 348 (459)
T ss_pred ----eEEechhhc-cCCcceeEEEEcHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHH---H--hccHHHHH
Confidence 444789998 88 499999999999987752 223456778999999988888741 1 11233334
Q ss_pred HHHHHHHHHHhcC---CCCCeeeCCCcceEEeEecCCccCCcccCCC-CCCCHHHHHHHHHHcCCEEEECCCCCCCCCcE
Q 012095 365 RERRDFLVKSFGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFG-KIENSESLCRYLLDKAQVALVPGDAFGDDTCI 440 (471)
Q Consensus 365 ~~~r~~l~~~L~~---~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~i 440 (471)
++.-+++.+.|++ .+.+.-+... |+++-+.+....... ..+. .......+.+.++++ ||++.+.. .+.+
T Consensus 349 ~~~g~~l~~~l~~l~~~~~v~~vrG~-Gl~~gie~~~~~~~~-~~~~~~~~~~~~i~~~~~~~-Gll~~~~g----~~~i 421 (459)
T PRK05965 349 QKAGPRFAAGLDALRAHPLVGDVRGR-GLLGALELVADKATK-TPFDAALDPADRIFDRAYAN-GLVFRAFG----DGVL 421 (459)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEeec-ceEEEEEEecccccc-CCCCchhHHHHHHHHHHHhC-CeEEEecC----CcEE
Confidence 4444444455444 3322222333 444555553210000 0000 000134567777765 99987631 3568
Q ss_pred EEEee--cCHHHHHHHHHHHHHHHHhhCCCCC
Q 012095 441 RISYA--ASLTTLQAAVERIKKGLLTLRPGVP 470 (471)
Q Consensus 441 Ris~~--~~~e~i~~~~~~l~~~l~~~~~~~~ 470 (471)
|++.. .+++++++++++|.++++++...++
T Consensus 422 ~~~PpL~it~~ei~~~~~~l~~~l~~~~~~~~ 453 (459)
T PRK05965 422 GFAPALCCTEGEFDLIFERTRKTLDDVLADPD 453 (459)
T ss_pred EEECCCcCCHHHHHHHHHHHHHHHHHHhcCcc
Confidence 88865 4999999999999999988654443
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-16 Score=161.93 Aligned_cols=351 Identities=15% Similarity=0.119 Sum_probs=208.8
Q ss_pred hcCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+.+||+..|.. .++. ++.+.+++.+++.+.. .+. ...+....+++.+.+..+. ..+.+.++++++++.
T Consensus 50 ~dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~-~~~---~~~~~~~~la~~L~~~~~~--~~~~v~f~~SGsEA~ 123 (433)
T PRK00615 50 SLGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAERGT-SYG---LTSEQEILFAEELFSYLGL--EDHKIRFVSSGTEAT 123 (433)
T ss_pred CCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCC-CCC---CCCHHHHHHHHHHHHhCCC--CcCEEEEeCchHHHH
Confidence 36888999988863 3444 7899999999987643 221 1134455566666554432 236899999999999
Q ss_pred HHHHHHhcC-CC-CeEEEcCCCCCChHHH---HHHcCCEE-----EEecCCC--CC----CCcCCHHHHHhhhcc---CC
Q 012095 169 LQAVLAVCS-PG-DEVIIPAPFWVSYPEM---ARIADATP-----VILPTRI--SE----NFLLDPKVLESKLTE---KS 229 (471)
Q Consensus 169 ~~~~~~l~~-~g-d~Vlv~~p~y~~~~~~---~~~~G~~~-----~~v~~~~--~~----~~~ld~e~l~~~l~~---~~ 229 (471)
..+++.... .| ..|+....+|++.... ....+... ....... .. .| -|++.+++.+.. +.
T Consensus 124 e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~l~~~~~~~ 202 (433)
T PRK00615 124 MTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPY-NDFQIFQTVMNSLGHRV 202 (433)
T ss_pred HHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCC-CCHHHHHHHHHhcCCce
Confidence 988886532 34 5788888888885421 11111000 0000000 00 01 177888888742 34
Q ss_pred cEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccc
Q 012095 230 RLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 308 (471)
Q Consensus 230 ~~i~i~~p~NPtG~~-~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 308 (471)
.+|++.......|.. .+++.+++|.++|++| |+++|.||++.++.. |. ........-..| | .+|+|.+| .|
T Consensus 203 aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~-g~llI~DEv~tG~R~-G~-~ga~~~~gv~PD--i--~~~gK~lg-gG 274 (433)
T PRK00615 203 AGVIFEPICANMGVVLPKPGFIEGIIQTCRRT-GSLSIMDEVVTGFRV-AQ-GGAAAIYHVKPD--I--TVYGKILG-GG 274 (433)
T ss_pred EEEEECCCCCCCCcccCCHHHHHHHHHHHHHc-CCEEEEEcccccccc-cH-hHHHHhcCCCCC--e--EEEccccc-CC
Confidence 455554445556764 4678899999999999 999999999987633 32 111111111112 3 34899998 78
Q ss_pred hhheeeEcCHHHHHHHHHH---HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCC--Cee
Q 012095 309 WRLGYIAGPKHFVAACNKI---QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG--VKM 383 (471)
Q Consensus 309 ~R~G~v~~~~~~i~~l~~~---~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g--~~~ 383 (471)
+.+|++++++++++.+... ....+++.++++.+++.+.|+.-.. ++.++++.+.-+..++.+.+.+.+. | +..
T Consensus 275 ~p~~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~-~~~~~~~~~~g~~l~~~l~~~~~~~-g~~v~~ 352 (433)
T PRK00615 275 LPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCRE-QGFYTQLSTLEQNFLSPIEEMIRSQ-GFPVSL 352 (433)
T ss_pred cceeeeeecHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHc-CCCeEE
Confidence 8899999999999988532 1224556788898888888875211 1222332222222233333433332 3 334
Q ss_pred eCCCcceEEeEecCCccCC--cccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHH
Q 012095 384 SEPQGAFYLFIDFSTYYGS--EAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKG 461 (471)
Q Consensus 384 ~~p~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~ 461 (471)
.. .|. ++.+.+...... .............+...|+++ ||++.|+... .+ =+|..+++++|+++++.+.++
T Consensus 353 ~r-~G~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~~---~~-~ls~~ht~~did~~~~a~~~~ 425 (433)
T PRK00615 353 VR-YGS-MFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSK-GVYLSPSPFE---AS-FLSSAHSMENLDYAQNVLIDS 425 (433)
T ss_pred Ee-ece-EEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHC-CeeecCcccc---cc-ceecCCCHHHHHHHHHHHHHH
Confidence 44 333 345555321000 000000000134678888876 9999885421 11 267777999999999999999
Q ss_pred HHhhC
Q 012095 462 LLTLR 466 (471)
Q Consensus 462 l~~~~ 466 (471)
+++.-
T Consensus 426 ~~~~~ 430 (433)
T PRK00615 426 LEKVF 430 (433)
T ss_pred HHHHh
Confidence 98754
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.9e-16 Score=153.73 Aligned_cols=290 Identities=13% Similarity=0.129 Sum_probs=204.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcE--EEeCChHHHHHHHHHHh--cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecC
Q 012095 133 GTLELRSAICHKLKEENGLSYTPDQI--LVSNGAKQSILQAVLAV--CSPGDEVIIPAPFWVSYPEMARIADATPVILPT 208 (471)
Q Consensus 133 G~~~lr~~ia~~~~~~~g~~~~~~~i--~it~G~~~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~ 208 (471)
+..++.+.+.+++.+.+|. .++++ ++|+|+|+++..++... ..++++|++++-.|.+....++..|.+.+.|+.
T Consensus 62 ~~~~~e~~~~~~~a~l~g~--~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~ 139 (380)
T PRK02769 62 NSFDFERDVMNFFAELFKI--PFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLLRIKSRVITS 139 (380)
T ss_pred ChHHHHHHHHHHHHHHhCC--CCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHHcCCCCceecc
Confidence 3567888888888888885 33444 88999999987665443 257889999999999999999999999988988
Q ss_pred CCCCCCcCCHHHHHhhhccC---CcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC---eEEEEccCCCccccCCCCcc
Q 012095 209 RISENFLLDPKVLESKLTEK---SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR---LLVLSDEIYEHIIYAPATHT 282 (471)
Q Consensus 209 ~~~~~~~ld~e~l~~~l~~~---~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~---~~ii~De~y~~~~~~~~~~~ 282 (471)
++ ++.+|+++|+++++++ |.+|+++.++|+||.+.| +++|+++|++| + +++++|.+|+.+...-....
T Consensus 140 ~~--~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idp---i~~I~~i~~~~-g~~~~~lHVDaA~gg~~~p~~~~~ 213 (380)
T PRK02769 140 LP--NGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDN---IKEIQEILKKI-GIDDYYIHADAALSGMILPFVNNP 213 (380)
T ss_pred CC--CCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCC---HHHHHHHHHHh-CCCceEEEEEecccceeecccCcc
Confidence 64 4569999999999775 888889999999999999 89999999999 7 79999999987443100000
Q ss_pred ccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHh-------cccCCCChHHHHHHHHHHhccCCChH
Q 012095 283 SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS-------QFTSGASSISQKAGVAALGLGYAGGE 355 (471)
Q Consensus 283 ~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~-------~~~~~~~~~~q~aa~~~L~~~~~~~~ 355 (471)
....+. .+-..+..|.+|.++ ....+|+++.+++.++.+..... ....+.+.....++.++|..- ..+
T Consensus 214 ~~~d~~--~~vDsis~s~HK~~~-~P~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~l--g~~ 288 (380)
T PRK02769 214 PPFSFA--DGIDSIAISGHKFIG-SPMPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSL--GSK 288 (380)
T ss_pred ccCCcc--CCCCEEEECCcccCC-CCCCcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHH--CHH
Confidence 011111 134467788999986 34568999988877665421111 112223444555555666531 356
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCeee-CCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC
Q 012095 356 VVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 434 (471)
Q Consensus 356 ~~~~~~~~~~~~r~~l~~~L~~~~g~~~~-~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f 434 (471)
.+++..++..+..+++.+.|++. |++.. .|.... +.++.| + .++ .++..+...+
T Consensus 289 G~~~~~~~~~~la~~l~~~L~~~-g~~~~~~p~~~~-v~f~~~--------------~-~~~----~~~w~l~~~~---- 343 (380)
T PRK02769 289 GLRQRVQHCLDMAQYAVDRLQAN-GIPAWRNPNSIT-VVFPCP--------------S-ERI----WKKWHLATSG---- 343 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCEEEcCCCceE-EEEcCC--------------C-HHH----HhCeeEcccC----
Confidence 78888899999999999999886 87654 455444 444433 2 122 2333333222
Q ss_pred CCCCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 012095 435 GDDTCIRISYAA--SLTTLQAAVERIKKGLL 463 (471)
Q Consensus 435 ~~~~~iRis~~~--~~e~i~~~~~~l~~~l~ 463 (471)
+++|+.+.. +.+.++++++.|...+.
T Consensus 344 ---~~~hi~~~~~~~~~~~~~f~~dl~~~~~ 371 (380)
T PRK02769 344 ---NQAHIITMPHHNKQQIDSLIDELIFDLK 371 (380)
T ss_pred ---CEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 478888876 88899999999988765
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-16 Score=157.03 Aligned_cols=317 Identities=11% Similarity=0.073 Sum_probs=213.8
Q ss_pred CChHHHHHHHHHHHHc----CCCCCCCCCCCH---HHHHHHHHHHHHHhCCCCCCCcEEEe-CChHHHHHHHHHHhcCCC
Q 012095 108 DTPVLIAEAGINAIRE----GFTRYTPNAGTL---ELRSAICHKLKEENGLSYTPDQILVS-NGAKQSILQAVLAVCSPG 179 (471)
Q Consensus 108 ~~p~~v~~a~~~~~~~----~~~~Y~~~~G~~---~lr~~ia~~~~~~~g~~~~~~~i~it-~G~~~al~~~~~~l~~~g 179 (471)
..|+.+++|+...+.+ +...+....-.. ++.+.+.+.+++.+|.+ +..+++++ .+++.+++.++..++.+|
T Consensus 13 ~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~-~~~~v~~~~gsgt~~~Ea~~~nl~~~g 91 (360)
T PRK05355 13 MLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIP-DNYKVLFLQGGASLQFAMVPMNLLGGG 91 (360)
T ss_pred CCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCC-CCcEEEEEcCCchHHHHHHHHhcCCCC
Confidence 3588999999887632 122222222233 66677777777777742 33456555 668888999999999999
Q ss_pred CeEEEcCCCCCCh--HHHHHHcCCEEEEecCCCCCCCcCCHHHHHh-hhccCCcEEEEcCCCCCcccCCCHHHHHHHHHH
Q 012095 180 DEVIIPAPFWVSY--PEMARIADATPVILPTRISENFLLDPKVLES-KLTEKSRLLILCSPSNPTGSVYPKNLLDEIARI 256 (471)
Q Consensus 180 d~Vlv~~p~y~~~--~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~-~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l 256 (471)
|.+++..-+..+. .++++.+|.. ..+..+...++ .+..++++ .+++++++|.+++-.+.||...+ .+++|
T Consensus 92 ~~~l~i~~G~fg~r~~~~a~~~g~~-~~~~~~~~~g~-~~~~~~~~~~l~~~~~~V~~th~eTstGv~~~--~i~~i--- 164 (360)
T PRK05355 92 KKADYVDTGSWSKKAIKEAKKYGEV-NVAASSEDDGF-TYIPPLDEWQLSDDAAYVHYTSNETIDGTEFH--ELPDT--- 164 (360)
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCc-eEEecccccCC-CCCCChhhccCCCCCCEEEEccCCCcceEecC--ccccc---
Confidence 8888765544333 3578888865 56655432333 34444444 77778999999999999999984 25555
Q ss_pred HHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHH---------
Q 012095 257 VAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI--------- 327 (471)
Q Consensus 257 ~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~--------- 327 (471)
+ ++++|+|.+.+. +.....+.. ++ +++.|-.|.+|.+| +|++++++++++++...
T Consensus 165 ---~-g~l~vVDavss~----g~~~idv~~----~d--~~~~ssqK~lgP~G--lg~l~~s~~~l~~~~~~~~~~~~~~~ 228 (360)
T PRK05355 165 ---G-DVPLVADMSSDI----LSRPIDVSK----FG--LIYAGAQKNIGPAG--LTIVIVREDLLGRALPSIPSMLDYKT 228 (360)
T ss_pred ---C-CCcEEEEcCccc----cCccCCHHH----cc--EEEEeccccccCCc--eEEEEECHHHHhhcccCCChHHHHHH
Confidence 7 899999999875 222222221 23 88888899998666 89999999888765431
Q ss_pred --H-hcccCCCChHHHHHHHHHHhccCCChH-HHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC---CcceEEeEecCCcc
Q 012095 328 --Q-SQFTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMSEP---QGAFYLFIDFSTYY 400 (471)
Q Consensus 328 --~-~~~~~~~~~~~q~aa~~~L~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p---~~g~~~~~~~~~~~ 400 (471)
. .....+++....+++.++|+.- .+. .++.+.++.++..+++++.|++++.+....+ ..+..+.+.+++..
T Consensus 229 ~~~~~~~~~Tp~~~~i~aL~~aL~~i--~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~~ 306 (360)
T PRK05355 229 HADNDSMYNTPPTFAIYLAGLVFKWL--KEQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADEE 306 (360)
T ss_pred HHhcCCccCCCcHHHHHHHHHHHHHH--HHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCChH
Confidence 1 1123567777778888888752 123 4888999999999999999999842222111 23333555666421
Q ss_pred CCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012095 401 GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~ 464 (471)
+..++...+.++ |+.+.+|.. ..+.+|+|+.. +.+|++++++.|+++++.
T Consensus 307 -----------~~~~~~~~~~~~-Gi~~~~~~~--~~g~vRiS~~~~nt~eei~~l~~~l~~~~~~ 358 (360)
T PRK05355 307 -----------LDKKFLAEAKAA-GLVGLKGHR--SVGGMRASIYNAMPLEGVQALVDFMKEFERR 358 (360)
T ss_pred -----------HHHHHHHHHHHC-CCcccCCCC--ccCcEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 335565666554 888866653 35789999987 899999999999998764
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.8e-16 Score=157.79 Aligned_cols=214 Identities=13% Similarity=0.171 Sum_probs=148.6
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChH----HHHHHcCCEEEEecCC
Q 012095 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVILPTR 209 (471)
Q Consensus 134 ~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~G~~~~~v~~~ 209 (471)
..++++.++++. | ....+++++|. .++..++.+++++||+|+++...|.+.. ..+...|++++.++ +
T Consensus 71 ~~~le~~la~l~----g---~~~~v~fsSG~-~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-~ 141 (437)
T PRK05613 71 VEALENRIASLE----G---GVHAVAFASGQ-AAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVE-N 141 (437)
T ss_pred HHHHHHHHHHHh----C---CCeEEEeCCHH-HHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEEC-C
Confidence 345555565554 4 23445555555 7788888888999999999999998764 34577899999997 2
Q ss_pred CCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCC
Q 012095 210 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289 (471)
Q Consensus 210 ~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 289 (471)
+ .|++++++++++++++|++.++.||+|.+.+ +++|+++|+++ ++++|+|.++..... ..+ ..
T Consensus 142 ~-----~d~e~l~~~l~~~tk~V~~e~~~Np~~~v~d---i~~I~~la~~~-gi~livD~t~a~g~~----~~p-~~--- 204 (437)
T PRK05613 142 P-----DDPESWQAAVQPNTKAFFGETFANPQADVLD---IPAVAEVAHRN-QVPLIVDNTIATAAL----VRP-LE--- 204 (437)
T ss_pred C-----CCHHHHHHhCCccCeEEEEECCCCCCCcccC---HHHHHHHHHHc-CCeEEEECCCccccc----cCh-HH---
Confidence 2 2889999999999999999999999999999 99999999999 999999999864211 111 11
Q ss_pred CCCceEEEecCCcccCccchhh-eeeEcCHH-----------------------------------HH-HHHHHHHhccc
Q 012095 290 MWERTLTVNGFSKAFAMTGWRL-GYIAGPKH-----------------------------------FV-AACNKIQSQFT 332 (471)
Q Consensus 290 ~~~~~i~~~S~SK~~g~~G~R~-G~v~~~~~-----------------------------------~i-~~l~~~~~~~~ 332 (471)
.+-.+++.|++|.++-.|.-+ |.++.+.+ ++ +.........+
T Consensus 205 -~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 283 (437)
T PRK05613 205 -LGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTG 283 (437)
T ss_pred -hCCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHHHHHHHHHHhcC
Confidence 234599999999986444444 44443221 00 11122334456
Q ss_pred CCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 012095 333 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 381 (471)
Q Consensus 333 ~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~ 381 (471)
.+.+++..+.+..-|+ -+....++..++...+.+.|++.|.+
T Consensus 284 ~~~~p~~a~l~~rgl~-------TL~lR~~~~~~nA~~lA~~L~~hp~V 325 (437)
T PRK05613 284 ATLSPFNAWVTAQGLD-------TLSLRLERHNENAIKVAEFLNNHEKV 325 (437)
T ss_pred CCCCHHHHHHHHcccC-------cHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 6677776544443333 35566667778888889999988765
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-16 Score=172.72 Aligned_cols=308 Identities=18% Similarity=0.165 Sum_probs=219.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChH----HHHHHHHHHhcCC-CC----eEEEcCCCCCChHHHHHHcCCE
Q 012095 132 AGTLELRSAICHKLKEENGLSYTPDQILVSNGAK----QSILQAVLAVCSP-GD----EVIIPAPFWVSYPEMARIADAT 202 (471)
Q Consensus 132 ~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~----~al~~~~~~l~~~-gd----~Vlv~~p~y~~~~~~~~~~G~~ 202 (471)
+|+.++...+.+++.+..|. ++|+++++++ +++.++++.+.++ || +|+++...|.+....+...|++
T Consensus 564 ~g~~~~~~~~r~~la~i~g~----~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~~G~~ 639 (993)
T PLN02414 564 QGYQEMFEDLGDLLCEITGF----DSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAMCGMK 639 (993)
T ss_pred HHHHHHHHHHHHHHHHHhCC----CeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHHHCCCE
Confidence 67777777777777777673 8999999988 8899999999866 88 8999999999988888889999
Q ss_pred EEEecCCCCCCCcCCHHHHHhhhcc---CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCC
Q 012095 203 PVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 279 (471)
Q Consensus 203 ~~~v~~~~~~~~~ld~e~l~~~l~~---~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~ 279 (471)
++.++++.+ ..+|+++|++++++ ++++|++++|+|-+|...+ +++|+++|+++ |+++++|.++..-...
T Consensus 640 vv~v~~d~~--G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~---I~eI~~iah~~-Galv~vDgAq~~a~~~-- 711 (993)
T PLN02414 640 IVVVGTDAK--GNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEG---IDEICDIIHDN-GGQVYMDGANMNAQVG-- 711 (993)
T ss_pred EEEeccCCC--CCcCHHHHHHHHhccCCCeEEEEEECCCccccccch---HHHHHHHHHHc-CCEEEEEecCHHhccC--
Confidence 999999743 46999999999984 6789999999999999988 99999999999 9999999998531110
Q ss_pred CccccccCCCCCCceEEEecCCcccC----ccchhheeeEcCHHHHHHHHHH---------H--hcccCCC---ChH---
Q 012095 280 THTSFASLPGMWERTLTVNGFSKAFA----MTGWRLGYIAGPKHFVAACNKI---------Q--SQFTSGA---SSI--- 338 (471)
Q Consensus 280 ~~~~~~~~~~~~~~~i~~~S~SK~~g----~~G~R~G~v~~~~~~i~~l~~~---------~--~~~~~~~---~~~--- 338 (471)
... ++..+-.+++.|..|+|+ ..|--+|++.+.++++..+-.. . ...+.|. .+.
T Consensus 712 -l~~----p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~a 786 (993)
T PLN02414 712 -LTS----PGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSA 786 (993)
T ss_pred -cCC----ccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhhH
Confidence 011 222455588999999775 2345589998888766654311 0 0111122 112
Q ss_pred -HHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceE--EeEecCCccCCcccCCCCCCCHHH
Q 012095 339 -SQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY--LFIDFSTYYGSEAEGFGKIENSES 415 (471)
Q Consensus 339 -~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~ 415 (471)
...++..++.. ...+.+.+..+....+.+++.+.|.+..++.+..|.+.+| +.++++... ...+ .+..+
T Consensus 787 l~l~~A~~yi~~--lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~~hEfv~~~~~l~--~~~g----~~~~d 858 (993)
T PLN02414 787 LILPISYTYIAM--MGSEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHEFIIDLRPFK--NTAG----IEPED 858 (993)
T ss_pred HHHHHHHHHHHH--HCHhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCeeeeEEEeccccc--cccC----CCHHH
Confidence 22223333332 1356788888888889999999998754566555555432 223443210 0001 25688
Q ss_pred HHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012095 416 LCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 416 l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~~ 466 (471)
+.++|++ +||...- ..|-..+++|++... ++++|+++++.|..+..+..
T Consensus 859 i~krL~d-~Gihapt-~~~pv~~~lmiepTE~~skeelDrf~~al~~i~~e~~ 909 (993)
T PLN02414 859 VAKRLMD-YGFHAPT-MSWPVPGTLMIEPTESESKAELDRFCDALISIREEIA 909 (993)
T ss_pred HHHHHHH-cCcEEee-eccccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHH
Confidence 9999995 5886543 334457899999886 88999999999988887754
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-16 Score=155.28 Aligned_cols=211 Identities=11% Similarity=0.134 Sum_probs=146.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChH----HHHHHcCCEEEEecC
Q 012095 133 GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVILPT 208 (471)
Q Consensus 133 G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~G~~~~~v~~ 208 (471)
...+|.+.++++. | .+..+++++++.||..++.+++++||+|+++.+.|.... ..+...|+++++++.
T Consensus 65 ~~~~lE~~la~le----g----~~~av~~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~ 136 (384)
T PRK06434 65 TVQAFEEKYAVLE----N----AEHALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDT 136 (384)
T ss_pred hHHHHHHHHHHHh----C----CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECC
Confidence 3456666666664 3 346788888889999999999999999999988776655 556778999999987
Q ss_pred CCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCC
Q 012095 209 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 288 (471)
Q Consensus 209 ~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 288 (471)
++.+.+.++. +++++|++.+|.|||+.+.+ +++|+++|+++ + +++|.++..- +.+ .++ .
T Consensus 137 ~~~~~~~l~~--------~~tklv~~e~~snpt~~v~D---i~~I~~la~~~-~--lvVD~t~~s~-~~~---~pl-~-- 195 (384)
T PRK06434 137 DRLNSLDFDP--------SNYDLIYAESITNPTLKVPD---IKNVSSFCHEN-D--VIVDATFASP-YNQ---NPL-D-- 195 (384)
T ss_pred CChhheeecC--------CCeeEEEEEcCCCCCceeec---HHHHHHHHHHc-C--eEEECCCCCc-ccC---Cch-h--
Confidence 6433333221 36899999999999999988 99999999999 7 4559997421 111 111 1
Q ss_pred CCCCceEEEecCCcccCccc-hhheeeEc-CHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 012095 289 GMWERTLTVNGFSKAFAMTG-WRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366 (471)
Q Consensus 289 ~~~~~~i~~~S~SK~~g~~G-~R~G~v~~-~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~ 366 (471)
.+-.+++.|.+|.++-+| .=.|.+++ ++++.++++..+.....+.+++..+.+..- -+.+....++..+
T Consensus 196 --~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~g-------L~tL~~R~~r~~~ 266 (384)
T PRK06434 196 --LGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRG-------LKTLGLRMEKHNK 266 (384)
T ss_pred --cCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhC-------CCcHHHHHHHHHH
Confidence 234589999999996323 33577766 566777777655455555565543332222 2336666777778
Q ss_pred HHHHHHHHhcCCCCC
Q 012095 367 RRDFLVKSFGELEGV 381 (471)
Q Consensus 367 ~r~~l~~~L~~~~g~ 381 (471)
+...+.+.|++.|.+
T Consensus 267 ~a~~~a~~L~~~p~v 281 (384)
T PRK06434 267 NGMELARFLRDSKKI 281 (384)
T ss_pred HHHHHHHHHHcCCCc
Confidence 888888888887765
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-15 Score=155.36 Aligned_cols=356 Identities=14% Similarity=0.123 Sum_probs=212.5
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+.+||+..|. ..++. +|.+.+++.+++.+....+.. .-..+....+++.+.+..+. ..+.++++++++++.
T Consensus 28 ~dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~~~~~~~-~~~~~~~~~lae~L~~~~p~--~~~~v~f~~sGsEAv 104 (447)
T PRK06917 28 QNGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSFVYRS-QFTSEPAEKLAKKLSDLSPG--DLNWSFFVNSGSEAN 104 (447)
T ss_pred CCCCEEEECchhHHhccCCCCCHHHHHHHHHHHhhCcCcccc-ccCCHHHHHHHHHHHHhCCC--CCCEEEEeCChHHHH
Confidence 3688899998885 33554 789999999998764332211 11235566677777654431 235899999999999
Q ss_pred HHHHHHhc-------CCC-CeEEEcCCCCCChHHHHHH-cCCE------------EEEecCCCCCC--Cc--------CC
Q 012095 169 LQAVLAVC-------SPG-DEVIIPAPFWVSYPEMARI-ADAT------------PVILPTRISEN--FL--------LD 217 (471)
Q Consensus 169 ~~~~~~l~-------~~g-d~Vlv~~p~y~~~~~~~~~-~G~~------------~~~v~~~~~~~--~~--------ld 217 (471)
..+++... .+| ..|+..+.+|++....+.. .|.. +..++...... +. -+
T Consensus 105 e~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 184 (447)
T PRK06917 105 ETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLAC 184 (447)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHH
Confidence 99988752 133 6788889889887644332 2211 11222111000 00 02
Q ss_pred HHHHHhhhcc----CCcEEEEcCCC-CCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCc-cccccCCCC
Q 012095 218 PKVLESKLTE----KSRLLILCSPS-NPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGM 290 (471)
Q Consensus 218 ~e~l~~~l~~----~~~~i~i~~p~-NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~~~ 290 (471)
++.+++.+.. +..+|++.-.+ |-.|. ..+++.+++|.++|++| |+++|.||++..+--.|... .....+.+
T Consensus 185 ~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~-g~llI~DEv~tGfGRtG~~~a~~~~gv~P- 262 (447)
T PRK06917 185 ATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHY-DILFIADEVMTGLGRTGAMFAMEHWGVEP- 262 (447)
T ss_pred HHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHc-CCEEEEechhhCcCcccchhhHHhcCCCC-
Confidence 4566666642 34455554323 34454 66799999999999999 99999999998752222211 01112221
Q ss_pred CCceEEEecCCcccCccch-hheeeEcCHHHHHHHHHH----HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHH
Q 012095 291 WERTLTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNKI----QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 365 (471)
Q Consensus 291 ~~~~i~~~S~SK~~g~~G~-R~G~v~~~~~~i~~l~~~----~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~ 365 (471)
| +-+|+|.++ .|. .+|.+++++++++.+... ....+++.++++.+++.+.|+.- ++ +.+.+..+
T Consensus 263 -D----i~~~gK~l~-~G~~Pi~a~~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l---~~--~~l~~~~~ 331 (447)
T PRK06917 263 -D----IMTLGKGLG-AGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYM---EK--HNLPEKAA 331 (447)
T ss_pred -C----EEEeeehhc-cCCcceEEEEEcHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHH---HH--CCHHHHHH
Confidence 2 456899998 785 899999999999887532 12346678999998988888741 11 12333333
Q ss_pred HHHHHHHHHhcC----CCCCeeeCCCcceEEeEecCCccCCcccCCC-CCCCHHHHHHHHHHcCCEEEECCCC-C-C-CC
Q 012095 366 ERRDFLVKSFGE----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFG-KIENSESLCRYLLDKAQVALVPGDA-F-G-DD 437 (471)
Q Consensus 366 ~~r~~l~~~L~~----~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~Ll~~~gV~v~pg~~-f-~-~~ 437 (471)
++-+++.+.|++ .+-+.-+...| .++.+.+-..... .+... .......+...++++ ||++.|+.. . + ..
T Consensus 332 ~~g~~l~~~L~~l~~~~~~i~~vrG~G-l~~~ie~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-Gvl~~~~~~~~~g~~~ 408 (447)
T PRK06917 332 EKGEYLIKGLQKVQQQSTIIGDVRGKG-LLIGVEFVADKKT-KQPFSKSQAVASELISVAAKN-GLLLYPAVAGQDGKEG 408 (447)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeecc-eEEEEEEeccCCc-CCCCcchhHHHHHHHHHHHhC-CcEEEecccccCCCCC
Confidence 444444444433 32222223333 4344444211000 00000 000245677777775 999987421 0 1 13
Q ss_pred CcEEEEee--cCHHHHHHHHHHHHHHHHhhC
Q 012095 438 TCIRISYA--ASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 438 ~~iRis~~--~~~e~i~~~~~~l~~~l~~~~ 466 (471)
+.+|++.. .++++|++++++|.++++++.
T Consensus 409 ~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~ 439 (447)
T PRK06917 409 DAVIIAPPMTITYSELDELLSIFAKSVEEMM 439 (447)
T ss_pred CEEEEECCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 67899866 599999999999999998763
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-15 Score=155.99 Aligned_cols=345 Identities=14% Similarity=0.075 Sum_probs=210.4
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.+||+..|. ..++. ++.+.+++.+++.+..+.. ......+....+++.+.+.... ..+.+.+++++++++.
T Consensus 44 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~-~~~~~~~~~~~la~~l~~~~p~--~~~~v~f~~sGseA~e 120 (442)
T PRK13360 44 DGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAP-AFQMGHPKAFELANRIAEIAPG--GLNHVFFTNSGSESVD 120 (442)
T ss_pred CCCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCcc-cCCcCCHHHHHHHHHHHHhCCC--CCCEEEEeCCcHHHHH
Confidence 578899998886 33444 7889999999987522111 1112245556677776654321 2358999999999999
Q ss_pred HHHHHhcC-------CC-CeEEEcCCCCCChHHHHHH-cC------------CEEEEecCCCC---CCCcC--------C
Q 012095 170 QAVLAVCS-------PG-DEVIIPAPFWVSYPEMARI-AD------------ATPVILPTRIS---ENFLL--------D 217 (471)
Q Consensus 170 ~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~-~G------------~~~~~v~~~~~---~~~~l--------d 217 (471)
.+++.... +| ..|+....+|++....+.. .| ..+..+|.... ..|.. .
T Consensus 121 ~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 200 (442)
T PRK13360 121 TALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAEL 200 (442)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHH
Confidence 88886431 22 5788888888886432221 11 11222332210 01111 1
Q ss_pred HHHHHhhhc----cCCcEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCC
Q 012095 218 PKVLESKLT----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292 (471)
Q Consensus 218 ~e~l~~~l~----~~~~~i~i~~p~NPtG~~-~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 292 (471)
++.+++.+. ++..+|++...+...|.. .+++.+++|.++|++| |+++|.||++..+-..|.. ..+....-..|
T Consensus 201 ~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~-g~llI~DEv~tG~GrtG~~-~a~~~~gv~PD 278 (442)
T PRK13360 201 ADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKH-GILLIFDEVITGFGRLGAP-FAAQYFGVTPD 278 (442)
T ss_pred HHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCCCccc-hhhhhcCCCCc
Confidence 456777764 234455554446566764 6788999999999999 9999999999765322221 11111111112
Q ss_pred ceEEEecCCcccCccc-hhheeeEcCHHHHHHHHH-------HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHH
Q 012095 293 RTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK-------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364 (471)
Q Consensus 293 ~~i~~~S~SK~~g~~G-~R~G~v~~~~~~i~~l~~-------~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~ 364 (471)
+-+|+|.++ .| +.+|.+++++++.+.+.. +....+++.++++..++.+.|+.- ++ +.+.++.
T Consensus 279 ----ivt~gK~l~-gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l---~~--~~l~~~~ 348 (442)
T PRK13360 279 ----LLTCAKGLT-NGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLY---ER--EGLLTRA 348 (442)
T ss_pred ----eeeeeeccc-cCccceEEEEEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHH---Hh--CCHHHHH
Confidence 347899997 66 789999999999887753 123356678999988888888741 11 1244455
Q ss_pred HHHHHHHHHHhcCC---CCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEE
Q 012095 365 RERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIR 441 (471)
Q Consensus 365 ~~~r~~l~~~L~~~---~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iR 441 (471)
+++-+++.+.|+++ +.+.-.... |.+.-+.+..... .......++...|+++ ||++.++. +.+|
T Consensus 349 ~~~g~~l~~~l~~l~~~~~v~~vrG~-Gl~~~~~l~~~~~------~~~~~~~~~~~~l~~~-Gvl~~~~~-----~~lr 415 (442)
T PRK13360 349 ARLAPYWEDALHSLRDAPHVIDIRNL-GLVGAVELAPRDG------KPGKRAYEVFLKCFEK-GLMIRYTG-----DILA 415 (442)
T ss_pred HHHHHHHHHHHHHhhcCCCeeeeecc-ceEEEEEEecCCC------CcchhHHHHHHHHHHC-CcEEEecC-----CEEE
Confidence 55555566665543 222112222 3333333321100 0001345778888776 99987642 4799
Q ss_pred EEee--cCHHHHHHHHHHHHHHHHhh
Q 012095 442 ISYA--ASLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 442 is~~--~~~e~i~~~~~~l~~~l~~~ 465 (471)
|+.. .++++|++++++|.++++++
T Consensus 416 ~~Ppl~~t~~eid~~~~~l~~~l~~~ 441 (442)
T PRK13360 416 LSPPLIIEEAQIDELFDILAQALKET 441 (442)
T ss_pred EeCCCccCHHHHHHHHHHHHHHHHHh
Confidence 9965 49999999999999998764
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-17 Score=146.90 Aligned_cols=166 Identities=23% Similarity=0.222 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChH-HHHHHcCCEEEEecCCCCCC
Q 012095 135 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP-EMARIADATPVILPTRISEN 213 (471)
Q Consensus 135 ~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~-~~~~~~G~~~~~v~~~~~~~ 213 (471)
.++++.++++++ .+.+++++++|+++++..+++++.++|++|+++++.|.+.. ..++..|++++.++.+....
T Consensus 3 ~~~~~~l~~~~~------~~~~~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 76 (170)
T cd01494 3 EELEEKLARLLQ------PGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGY 76 (170)
T ss_pred HHHHHHHHHHcC------CCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehhhHHHhcCCEEEEeccCCCCc
Confidence 567888888763 36679999999999999999999988999999999999988 88899999999999875443
Q ss_pred CcCCHHHHHhhh-ccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCC
Q 012095 214 FLLDPKVLESKL-TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292 (471)
Q Consensus 214 ~~ld~e~l~~~l-~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 292 (471)
...+.+.+++.. .++++++++++++||+|...+ .++|.++|+++ ++++|+|++|..+...... .... ..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~---~~~l~~~~~~~-~~~li~D~a~~~~~~~~~~----~~~~-~~~ 147 (170)
T cd01494 77 GGLDVAILEELKAKPNVALIVITPNTTSGGVLVP---LKEIRKIAKEY-GILLLVDAASAGGASPAPG----VLIP-EGG 147 (170)
T ss_pred cchhhhhhhhccccCceEEEEEecCcCCCCeEcC---HHHHHHHHHHc-CCEEEEecccccccccccc----cccc-ccc
Confidence 333433555443 567889999999999999999 58889999999 9999999999986654321 1111 134
Q ss_pred ceEEEecCCcccCccchhheeeEcC
Q 012095 293 RTLTVNGFSKAFAMTGWRLGYIAGP 317 (471)
Q Consensus 293 ~~i~~~S~SK~~g~~G~R~G~v~~~ 317 (471)
..+++.|++|.++. .++||++++
T Consensus 148 ~d~~~~s~~K~~~~--~~~G~l~~~ 170 (170)
T cd01494 148 ADVVTFSLHKNLGG--EGGGVVIVK 170 (170)
T ss_pred CCEEEEEcccccCC--CceEEEEeC
Confidence 56889999999973 789998753
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-15 Score=155.51 Aligned_cols=356 Identities=13% Similarity=0.091 Sum_probs=210.6
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+.+||+..|. ..++. +|.+.+++.+++.+... +.+ .-..+.+..+++.+.+..+. ..+.++++++++++.
T Consensus 50 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~-~~~-~~~~~~~~~lae~L~~~~p~--~~~~v~f~~SGsEAv 125 (451)
T PRK06062 50 YEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCT-VAP-AHANDARSEAARLIAERAPG--DLSKVFFTNGGADAN 125 (451)
T ss_pred CCCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCC-cCC-ccCCHHHHHHHHHHHHhCCC--CCCEEEEcCChHHHH
Confidence 3688899998886 33444 68899999999876332 212 22345566677777654431 236899999999999
Q ss_pred HHHHHHhcC-CC-CeEEEcCCCCCChHHHHHHc-CCE-----------EEEecCCCCC--CCc--CC-------HHHHHh
Q 012095 169 LQAVLAVCS-PG-DEVIIPAPFWVSYPEMARIA-DAT-----------PVILPTRISE--NFL--LD-------PKVLES 223 (471)
Q Consensus 169 ~~~~~~l~~-~g-d~Vlv~~p~y~~~~~~~~~~-G~~-----------~~~v~~~~~~--~~~--ld-------~e~l~~ 223 (471)
..+++.... .| ..|+....+|++....+... |.. +..++..... .|. -| ++.+++
T Consensus 126 e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~ 205 (451)
T PRK06062 126 EHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLER 205 (451)
T ss_pred HHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHH
Confidence 998886431 33 67888888888776443322 111 1122211100 010 12 567777
Q ss_pred hhc----cCCcEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEe
Q 012095 224 KLT----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVN 298 (471)
Q Consensus 224 ~l~----~~~~~i~i~~p~NPtG~~-~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~ 298 (471)
.+. ++..+|++...+.-.|.. .+++.+++|.++|++| |+++|.||++..|--.|.. .....+.-..| +-
T Consensus 206 ~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~-g~lLI~DEV~tGfGRtG~~-~a~~~~gv~PD----i~ 279 (451)
T PRK06062 206 VIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRH-GIVLIADEVMAGFGRTGKW-FAIEHFGVVPD----LI 279 (451)
T ss_pred HHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHc-CCEEEeeccccCCCcCcHH-HHHHhcCCCCC----ee
Confidence 774 234455554445556655 5788999999999999 9999999999975322211 01111111112 45
Q ss_pred cCCcccCccch-hheeeEcCHHHHHHHHHH--HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHH-HHHHHHHHHH
Q 012095 299 GFSKAFAMTGW-RLGYIAGPKHFVAACNKI--QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF-RERRDFLVKS 374 (471)
Q Consensus 299 S~SK~~g~~G~-R~G~v~~~~~~i~~l~~~--~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~-~~~r~~l~~~ 374 (471)
+|+|.+| .|+ .+|.+++++++++.+... ....+++.++++.+++.+.|+.-.. ++.+++..+.= +..++.|.+.
T Consensus 280 t~gK~lg-gG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~-~~l~~~~~~~G~~~l~~~L~~l 357 (451)
T PRK06062 280 TFAKGVN-SGYVPLGGVAISEAIAATFADRPYPGGLTYSGHPLACAAAVATINAMEE-EGIVENAARIGAEVLGPGLREL 357 (451)
T ss_pred eechhhh-cCCcCcEEEEEcHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHH
Confidence 6899998 784 899999999999887532 2334677889999999888874211 11122221111 1222233332
Q ss_pred hcCCCCCeeeCCCcceEEeEecCCccC-Cc--ccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHH
Q 012095 375 FGELEGVKMSEPQGAFYLFIDFSTYYG-SE--AEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLT 449 (471)
Q Consensus 375 L~~~~g~~~~~p~~g~~~~~~~~~~~~-~~--~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e 449 (471)
..+.+.+.-+...| +++-+.+..... .. ............+.+.|+++ ||++.+. .+.+|++.. .+++
T Consensus 358 ~~~~~~v~~vrG~G-l~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gvl~~~~-----~~~lrl~ppl~~t~~ 430 (451)
T PRK06062 358 AERHPSVGEVRGLG-VFWALELVADRETREPLAPYGASSAAMAAVKAACKER-GLLPFVN-----GNRIHVVPPCTVTED 430 (451)
T ss_pred HhcCCcEEeEeccc-cEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHC-CcEEeec-----CCEEEEECCccCCHH
Confidence 23333222223344 334445431100 00 00000000134677777765 9987652 257899874 4999
Q ss_pred HHHHHHHHHHHHHHhhC
Q 012095 450 TLQAAVERIKKGLLTLR 466 (471)
Q Consensus 450 ~i~~~~~~l~~~l~~~~ 466 (471)
+|++++++|+++++++.
T Consensus 431 eid~~~~~l~~~l~~~~ 447 (451)
T PRK06062 431 EVREGLAILDAALAVAD 447 (451)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999998764
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-15 Score=154.50 Aligned_cols=347 Identities=13% Similarity=0.049 Sum_probs=212.9
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+.+||+..|. ..++. ++.+.+++.+++.+..+.. ...-..+....+++.+.+..+. .-+.++++++++++.
T Consensus 51 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~-~~~~~~~~~~~lAe~L~~~~p~--~~~~v~f~~sGseAv 127 (453)
T PRK06943 51 RDGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAM-LAGCTHEPAIELAERLAALTGG--TLGHAFFASDGASAV 127 (453)
T ss_pred CCCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCCcc-ccccCCHHHHHHHHHHHHhCCC--CCCEEEEeCCCHHHH
Confidence 3688899998885 34444 7889999999987632111 1111235556677777655432 225899999999999
Q ss_pred HHHHHHhc-------CCC-CeEEEcCCCCCChHHHHHH-cCC------------EEEEecCCCCCC--Cc--------CC
Q 012095 169 LQAVLAVC-------SPG-DEVIIPAPFWVSYPEMARI-ADA------------TPVILPTRISEN--FL--------LD 217 (471)
Q Consensus 169 ~~~~~~l~-------~~g-d~Vlv~~p~y~~~~~~~~~-~G~------------~~~~v~~~~~~~--~~--------ld 217 (471)
..+++... .+| ..|+....+|++....+.. .|- .+..++.....+ +. -+
T Consensus 128 e~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 207 (453)
T PRK06943 128 EIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARA 207 (453)
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHH
Confidence 99888752 133 6788888888876532221 111 122233221100 00 13
Q ss_pred HHHHHhhhc---cCCcEEEEcC-CCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCC
Q 012095 218 PKVLESKLT---EKSRLLILCS-PSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292 (471)
Q Consensus 218 ~e~l~~~l~---~~~~~i~i~~-p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 292 (471)
++.+++.+. ++..+|++.- .+.-.|. ..+++.++++.++|++| |+++|.||++..+-..|.. .....+.-..|
T Consensus 208 ~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~-gillI~DEV~TG~GRtG~~-fa~~~~gv~PD 285 (453)
T PRK06943 208 LADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRY-GVHLIADEIAVGCGRTGTF-FACEQAGVWPD 285 (453)
T ss_pred HHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHc-CCEEEeechhhCCCCCcch-hHHHhCCCCCC
Confidence 466777664 3455666544 2555665 67899999999999999 9999999999876322321 11111111112
Q ss_pred ceEEEecCCcccCccc-hhheeeEcCHHHHHHHHH------HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHH
Q 012095 293 RTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 365 (471)
Q Consensus 293 ~~i~~~S~SK~~g~~G-~R~G~v~~~~~~i~~l~~------~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~ 365 (471)
+-+|+|.++ .| +.+|.+++++++.+.+.. .....+++.++++.+++.+.|+.-.. ++ +.+..+
T Consensus 286 ----ivt~gKgl~-gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~-~~----l~~~~~ 355 (453)
T PRK06943 286 ----FLCLSKGIS-GGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAE-DD----VLARNA 355 (453)
T ss_pred ----eEeeehhhc-cCcccceEEEEcHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHh-cC----HHHHHH
Confidence 344689998 88 599999999999987753 12334667899999999988875211 12 223333
Q ss_pred HHHHHHHHHhcC---CCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEE
Q 012095 366 ERRDFLVKSFGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRI 442 (471)
Q Consensus 366 ~~r~~l~~~L~~---~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRi 442 (471)
++-+++.+.|++ .+++.-+... |+++-+.+...... . ......+.+.++++ ||++.+.. +.+|+
T Consensus 356 ~~G~~l~~~L~~l~~~~~v~~vrG~-Gl~~gvel~~~~~~---~---~~~~~~i~~~~~~~-Gll~~~~g-----~~l~~ 422 (453)
T PRK06943 356 RKSARLRAALAPLAAHPQVRHLRQR-GTIFAFDVALDGDA---A---RTFSRRFFEAALER-ELLLRPIG-----TTVYL 422 (453)
T ss_pred HHHHHHHHHHHHHhcCCCEEeEecc-ccEEEEEEccCCCc---c---hHHHHHHHHHHHHC-CcEEEecC-----CEEEE
Confidence 333344444433 3444433333 44455555311000 0 00135677777765 99987742 35899
Q ss_pred E--eecCHHHHHHHHHHHHHHHHhhC
Q 012095 443 S--YAASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 443 s--~~~~~e~i~~~~~~l~~~l~~~~ 466 (471)
+ +..++++|++++++|+++++++.
T Consensus 423 ~Ppl~it~~eid~~~~~l~~al~~~~ 448 (453)
T PRK06943 423 MPPYVLDDDEIAWLAERTRATLDATL 448 (453)
T ss_pred eCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 8 44599999999999999998763
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-15 Score=149.59 Aligned_cols=216 Identities=18% Similarity=0.186 Sum_probs=158.9
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH----HHHcCCEEEEe
Q 012095 131 NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVIL 206 (471)
Q Consensus 131 ~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~G~~~~~v 206 (471)
++....|.+.++++- ..++.+.++++..|+..++.+++++||.|++++..|.+.... .+..|.++.++
T Consensus 62 nPT~~~lE~~~a~LE--------g~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~ 133 (396)
T COG0626 62 NPTRDALEEALAELE--------GGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFV 133 (396)
T ss_pred CccHHHHHHHHHHhh--------CCCcEEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEE
Confidence 344566777777763 357889999999999999999999999999999999877654 45678888877
Q ss_pred cCCCCCCCcCCHHHHHhhhc-cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccc
Q 012095 207 PTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 285 (471)
Q Consensus 207 ~~~~~~~~~ld~e~l~~~l~-~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~ 285 (471)
+. .+.+.+++++. +++++|++.+|.|||..+.+ +.+|+++|+++ ++++|+|+.|..-.+
T Consensus 134 d~-------~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~D---I~~i~~~A~~~-g~~vvVDNTfatP~~--------- 193 (396)
T COG0626 134 DP-------GDDEALEAAIKEPNTKLVFLETPSNPLLEVPD---IPAIARLAKAY-GALVVVDNTFATPVL--------- 193 (396)
T ss_pred CC-------CChHHHHHHhcccCceEEEEeCCCCccccccc---HHHHHHHHHhc-CCEEEEECCcccccc---------
Confidence 63 25667777776 59999999999999999999 99999999999 899999999975222
Q ss_pred cCCCCCCceEEEecCCcccCccc--hhheeeEcCH-HHHHHHHHHHh-cccCCCChHHHHHHHHHHhccCCChHHHHHHH
Q 012095 286 SLPGMWERTLTVNGFSKAFAMTG--WRLGYIAGPK-HFVAACNKIQS-QFTSGASSISQKAGVAALGLGYAGGEVVSKMV 361 (471)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~g~~G--~R~G~v~~~~-~~i~~l~~~~~-~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~ 361 (471)
+-+-..+-.|++.|.+|.++ .. .=.|.++++. ++.+.+..... .....++++..+.+..-|+ -+.-+.
T Consensus 194 q~PL~~GaDIVvhSaTKyl~-GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlk-------TL~~Rm 265 (396)
T COG0626 194 QRPLELGADIVVHSATKYLG-GHSDVLGGVVLTPNEELYELLFFAQRANTGAVLSPFDAWLLLRGLR-------TLALRM 265 (396)
T ss_pred cChhhcCCCEEEEecccccc-CCcceeeeEEecChHHHHHHHHHHHHhhcCCCCCHHHHHHHHhccc-------hHHHHH
Confidence 11111345599999999996 33 3347677655 45555433333 4666677777555444333 355566
Q ss_pred HHHHHHHHHHHHHhcCCCCCe
Q 012095 362 KAFRERRDFLVKSFGELEGVK 382 (471)
Q Consensus 362 ~~~~~~r~~l~~~L~~~~g~~ 382 (471)
++..++...+.+.|.+.|.++
T Consensus 266 ~~~~~nA~~IA~~L~~~p~V~ 286 (396)
T COG0626 266 ERHNENALKIAEFLADHPKVK 286 (396)
T ss_pred HHHHHHHHHHHHHHhcCCCeE
Confidence 667778888888888877664
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-15 Score=155.21 Aligned_cols=356 Identities=12% Similarity=0.063 Sum_probs=206.3
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHH
Q 012095 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPN-AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (471)
Q Consensus 92 ~~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~-~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~a 167 (471)
..|+.+||+..|. ..++. +|.+.+++.+++.+... ++.. .+..+....+++.+.+..+. ..+.++++++++++
T Consensus 51 ~dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~~~-~~~~~~~~~~~~~~lae~L~~~~p~--~~~~v~f~~SGseA 127 (460)
T PRK12403 51 NDGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPY-YNMFFHTTHPAVIELSELLFSLLPG--HYSHAIYTNSGSEA 127 (460)
T ss_pred CCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhCCC-eecccccCCHHHHHHHHHHHHhCCC--CcCEEEEeCCcHHH
Confidence 3688899988775 23444 68899999999876322 1111 23456667777777655442 23689999999999
Q ss_pred HHHHHHHhc-------CCCCe-EEEcCCCCCChH-HHHHHcCCE-----------EEEecCCC--CCCCcC--------C
Q 012095 168 ILQAVLAVC-------SPGDE-VIIPAPFWVSYP-EMARIADAT-----------PVILPTRI--SENFLL--------D 217 (471)
Q Consensus 168 l~~~~~~l~-------~~gd~-Vlv~~p~y~~~~-~~~~~~G~~-----------~~~v~~~~--~~~~~l--------d 217 (471)
...+++... ++++. |+...-+|++.. ......|.. +..+|... ..++.. +
T Consensus 128 ~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 207 (460)
T PRK12403 128 NEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRA 207 (460)
T ss_pred HHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHHHHHH
Confidence 999988763 23344 445555676653 333333322 22222110 000011 1
Q ss_pred HHHHHhhhc----cCCcEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCC
Q 012095 218 PKVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292 (471)
Q Consensus 218 ~e~l~~~l~----~~~~~i~i~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 292 (471)
.+.+++.+. ++..+|++...+.-.|. ..+++.+++|.++|++| |+++|.||++..+--.|.. .....+.-..|
T Consensus 208 ~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~-g~lLI~DEV~tGfGRtG~~-~a~e~~gv~PD 285 (460)
T PRK12403 208 ALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQY-DVLLCADEVIGGFGRTGEW-FAHEHFGFEPD 285 (460)
T ss_pred HHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCchh-hhhhhcCCCCC
Confidence 345655542 23445555444555675 46788999999999999 9999999999876322321 11111111112
Q ss_pred ceEEEecCCcccCccch-hheeeEcCHHHHHHHHHH----HhcccCCCChHHHHHHHHHHhccCCChHHHHHHH-HHHHH
Q 012095 293 RTLTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNKI----QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV-KAFRE 366 (471)
Q Consensus 293 ~~i~~~S~SK~~g~~G~-R~G~v~~~~~~i~~l~~~----~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~-~~~~~ 366 (471)
|+ +|+|.+| .|. .+|.+++++++.+.+... ....+++.++++.+++.+.|+.-.. +..+++.. ..-+.
T Consensus 286 --iv--~~gK~lg-gG~~Piga~v~~~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~-~~l~~~~~~~~g~~ 359 (460)
T PRK12403 286 --TL--SIAKGLT-SGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRD-EGVVTRVKDDTGPY 359 (460)
T ss_pred --eE--EEccccc-ccccceEEEEECHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence 33 4899998 784 899999999998877531 1234667899999999988874211 12233332 22222
Q ss_pred HHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCC-CCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee
Q 012095 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI-ENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 445 (471)
Q Consensus 367 ~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~ 445 (471)
.++.+.+...+.+-+.-+... |.++.+.+... .......... .....+...++++ ||.+.+.. +.+|++..
T Consensus 360 l~~~L~~l~~~~~~i~~vrG~-Gl~~gie~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-Gll~~~~~-----~~~~l~Pp 431 (460)
T PRK12403 360 LQRCLREVFGDHPLVGEVQGA-GLVAALQFAED-KATRKRFANENDLAWRCRTIGFEE-GVIIRSTL-----GRMIMAPA 431 (460)
T ss_pred HHHHHHHHHhcCCCEEeEeec-ceEEEEEEccC-ccccccccchhHHHHHHHHHHHhC-CEEEEecC-----CEEEEECC
Confidence 333333333334322222333 44455555321 0000000000 0122344555665 99987531 35888888
Q ss_pred c--CHHHHHHHHHHHHHHHHhhC
Q 012095 446 A--SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 446 ~--~~e~i~~~~~~l~~~l~~~~ 466 (471)
. ++++++++++.|+++++++.
T Consensus 432 l~it~~eid~~~~~l~~al~~~~ 454 (460)
T PRK12403 432 LVAGRAEIDELVDKTRIAVDRTA 454 (460)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7 99999999999999998874
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-15 Score=154.92 Aligned_cols=340 Identities=12% Similarity=0.062 Sum_probs=210.6
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+.+||+..|. ..++. ++.+.+|+.+++.+..+.. ...-..+....+++.+.+..+. ..+.++++++++++.
T Consensus 40 ~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~-~~~~~~~~~~~la~~L~~~~p~--~~~~v~f~~SGsEAv 116 (428)
T PRK07986 40 ADGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVM-FGGITHPPAIELCRKLVAMTPQ--PLECVFLADSGSVAV 116 (428)
T ss_pred CCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhcCCcc-ccccCCHHHHHHHHHHHhhCCC--CcCEEEEeCCcHHHH
Confidence 3688899998876 33333 6889999999887632211 1111345566677777655431 236899999999999
Q ss_pred HHHHHHhcC------C-CCeEEEcCCCCCChHHHHHHc-CCE-------------EEEecCCCCC---CC-cCCHHHHHh
Q 012095 169 LQAVLAVCS------P-GDEVIIPAPFWVSYPEMARIA-DAT-------------PVILPTRISE---NF-LLDPKVLES 223 (471)
Q Consensus 169 ~~~~~~l~~------~-gd~Vlv~~p~y~~~~~~~~~~-G~~-------------~~~v~~~~~~---~~-~ld~e~l~~ 223 (471)
+.+++.... . ..+|+....+|++....+... +.. ++.+|..... .+ .-|++++++
T Consensus 117 e~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~ 196 (428)
T PRK07986 117 EVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFAR 196 (428)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHH
Confidence 988886532 2 367888899888754332221 211 1222221100 01 125677777
Q ss_pred hhcc---CCcEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEe
Q 012095 224 KLTE---KSRLLILCSP-SNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVN 298 (471)
Q Consensus 224 ~l~~---~~~~i~i~~p-~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~ 298 (471)
.+.. +..+|++... +.-.|. ..+++.+++|.++|++| ++++|+||++..+-..|.. .......-..| |+
T Consensus 197 ~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~-g~lLI~DEv~tG~GrtG~~-fa~~~~gv~PD--i~-- 270 (428)
T PRK07986 197 LMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDRE-GILLIADEIATGFGRTGKL-FACEHAGIAPD--IL-- 270 (428)
T ss_pred HHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHc-CCEEEEeccccCCccCCCe-eeecccCCCCC--EE--
Confidence 7742 3345555442 444564 55779999999999999 9999999999765222221 11111111112 33
Q ss_pred cCCcccCccc-hhheeeEcCHHHHHHHHHH-----HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHH
Q 012095 299 GFSKAFAMTG-WRLGYIAGPKHFVAACNKI-----QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 372 (471)
Q Consensus 299 S~SK~~g~~G-~R~G~v~~~~~~i~~l~~~-----~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~ 372 (471)
+|+|.++ .| +.+|.+++++++++.+... ....+++.++++.+++.+.|+.- ++ .++.++.+++-+++.
T Consensus 271 t~gK~l~-gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i---~~--~~~~~~~~~~g~~l~ 344 (428)
T PRK07986 271 CLGKALT-GGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLL---ES--GDWQQQVAAIEAQLR 344 (428)
T ss_pred Eechhhh-CCcccCcchhchHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHH
Confidence 5899997 78 5889999999999988642 13346667899988888888741 11 123344444444455
Q ss_pred HHhcCC---CCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cC
Q 012095 373 KSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--AS 447 (471)
Q Consensus 373 ~~L~~~---~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~--~~ 447 (471)
+.|+++ +.+.-+... |.++-+.+... .....+.+.|+++ ||++.+.. +.+|+... .+
T Consensus 345 ~~l~~l~~~~~i~~vRg~-Gl~~~ve~~~~-----------~~~~~~~~~l~~~-Gl~~~~~g-----~~i~~~Ppl~it 406 (428)
T PRK07986 345 EELAPLRDAPMVADVRVL-GAIGVVETTRP-----------VNMAALQRFFVEQ-GVWIRPFG-----KLIYLMPPYIIL 406 (428)
T ss_pred HHHHHHhcCCCEEeEecc-ceEEEEEeCCc-----------ccHHHHHHHHHHC-CcEEEecC-----CEEEEeCCCCCC
Confidence 555443 323222222 44455555432 1356788888766 99998742 47899655 49
Q ss_pred HHHHHHHHHHHHHHHHh
Q 012095 448 LTTLQAAVERIKKGLLT 464 (471)
Q Consensus 448 ~e~i~~~~~~l~~~l~~ 464 (471)
++++++++++|.+++++
T Consensus 407 ~~ei~~~~~~l~~~l~~ 423 (428)
T PRK07986 407 PEQLQRLTAAVNRAVQD 423 (428)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999999864
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-15 Score=154.12 Aligned_cols=349 Identities=16% Similarity=0.149 Sum_probs=206.9
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+.+||+..|. ..++. ++.+.+++.+++.+... ........+....+++.+.+..+ ...+.+.+++++++|.
T Consensus 50 ~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~~-~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGsEA~ 126 (457)
T PRK05639 50 VDGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQH-SMIGYTHSERAIRVAEKLAEISP--IENPKVLFGLSGSDAV 126 (457)
T ss_pred CCCCEEEECCcCHHhhccCCCCHHHHHHHHHHHHhccc-cccCccCCHHHHHHHHHHHhhCC--CCcCEEEEeCchHHHH
Confidence 3688899998886 34444 78899999999875321 11111113444556666655433 1236899999999999
Q ss_pred HHHHHHhc--CCCCeEEEcCCCCCChHHHHHH-cCC-------------EEEEecCCCCCC--Cc----CCH--------
Q 012095 169 LQAVLAVC--SPGDEVIIPAPFWVSYPEMARI-ADA-------------TPVILPTRISEN--FL----LDP-------- 218 (471)
Q Consensus 169 ~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~-~G~-------------~~~~v~~~~~~~--~~----ld~-------- 218 (471)
..+++... .....|+....+|++....+.. .|. .++.+|...... +. -+.
T Consensus 127 e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (457)
T PRK05639 127 DMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFL 206 (457)
T ss_pred HHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHH
Confidence 98888653 2235788888888876543322 221 123333321100 00 022
Q ss_pred HHHHhhh------ccCCcEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCC
Q 012095 219 KVLESKL------TEKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 291 (471)
Q Consensus 219 e~l~~~l------~~~~~~i~i~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~ 291 (471)
+.+++.+ .++..+|++.-.+.-.|. ..+++.+++|.++|++| ++++|.||++..+-..|.. .....+.-..
T Consensus 207 ~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~-g~llI~DEv~tG~GrtG~~-~a~~~~gv~P 284 (457)
T PRK05639 207 DYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEH-GILLVMDEVQTGIGRTGKW-FASEWFEVKP 284 (457)
T ss_pred HHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhccCcCchH-HHHHhcCCCC
Confidence 2344443 124455555444555675 56788999999999999 9999999999875323321 1111111111
Q ss_pred CceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHH
Q 012095 292 ERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 371 (471)
Q Consensus 292 ~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l 371 (471)
| |++ |+|.+| .|..+|.+++++++++.... ....+++.++++.+++.+.|+.- ++ +...+..+++-+++
T Consensus 285 D--iv~--~gK~l~-gG~pi~av~~~~~i~~~~~~-~~~~T~~g~p~~~aaa~a~l~~l---~~--~~l~~~~~~~g~~l 353 (457)
T PRK05639 285 D--LII--FGKGVA-SGMGLSGVIGRKELMDLTSG-SALLTPAANPVISAAAEATLEII---EE--ENLLKNALKVGEFI 353 (457)
T ss_pred C--EEE--echhhc-CCCcceeEEehHHHHhhcCC-CcccCCCcCHHHHHHHHHHHHHH---HH--ccHHHHHHHHHHHH
Confidence 2 333 899998 78999999999999883221 12346678888888888888641 11 12223333344444
Q ss_pred HHHhcC----CCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec-
Q 012095 372 VKSFGE----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA- 446 (471)
Q Consensus 372 ~~~L~~----~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~- 446 (471)
.+.|++ .+-+.-+... |.++.+.+-..... ........+.+.++++ ||++.+... ..+.+|++...
T Consensus 354 ~~~L~~l~~~~~~~~~VrG~-Gl~~gve~~~~~~~-----~~~~~~~~~~~~~~~~-Gv~~~~~g~--~~~~lr~~Ppl~ 424 (457)
T PRK05639 354 KKRLLEMKESFEVIGDVRGK-GLMIGVEIVKENGK-----PDPELTGKICWRAFEL-GLILPSYGM--FGNVIRITPPLV 424 (457)
T ss_pred HHHHHHHHHhCCCEEeeccc-eeEEEEEEecCCCC-----CCHHHHHHHHHHHHhC-CeEEeecCC--CCCEEEEeCCCc
Confidence 444443 3212212233 44455454211000 0000235677777775 999876421 14689998875
Q ss_pred -CHHHHHHHHHHHHHHHHhh
Q 012095 447 -SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 447 -~~e~i~~~~~~l~~~l~~~ 465 (471)
+++++++++++|.++++++
T Consensus 425 it~~~id~~~~~l~~~l~~~ 444 (457)
T PRK05639 425 ITKEIAEKGLEIMERAIKDA 444 (457)
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998765
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-15 Score=155.78 Aligned_cols=353 Identities=13% Similarity=0.056 Sum_probs=212.0
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+.+||+..|. ..++. ++.+.+|+.+++.+............+.+..+++.+.+..+. .-+.++++++++++.
T Consensus 45 ~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~--~~~~v~f~~SGseAv 122 (460)
T PRK06105 45 DAGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYHTFSHKSHGPVIDLAEKLVAMAPV--PMSKVFFTNSGSEAN 122 (460)
T ss_pred CCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCC--CCCEEEEeCCcHHHH
Confidence 3688899998886 34444 788999999998763211111122345566677777655432 236899999999999
Q ss_pred HHHHHHhc-------CCC-CeEEEcCCCCCChHHHHHHc-CCE------------EEEecCCCCCCCc-----------C
Q 012095 169 LQAVLAVC-------SPG-DEVIIPAPFWVSYPEMARIA-DAT------------PVILPTRISENFL-----------L 216 (471)
Q Consensus 169 ~~~~~~l~-------~~g-d~Vlv~~p~y~~~~~~~~~~-G~~------------~~~v~~~~~~~~~-----------l 216 (471)
..+++... .+| ..|+...-+|++....+... |.. +..++......+. .
T Consensus 123 e~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 202 (460)
T PRK06105 123 DTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATR 202 (460)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHHHHH
Confidence 99988742 133 56888888887765332211 111 1122211100000 0
Q ss_pred CHHHHHhhhc----cCCcEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCC
Q 012095 217 DPKVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 291 (471)
Q Consensus 217 d~e~l~~~l~----~~~~~i~i~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~ 291 (471)
..+++++.+. ++..+|++...+.-.|. ..+++.+++|.++|++| ++++|.||++..+--.|.. ..+....-..
T Consensus 203 ~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~-~~llI~DEv~tG~GRtG~~-f~~~~~~v~P 280 (460)
T PRK06105 203 LANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKY-DILLVADEVICGFGRTGNM-FGCETFGIKP 280 (460)
T ss_pred HHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCeEEEeccccCCCcCchh-hhHHhcCCCC
Confidence 1355666663 23455555444555565 46899999999999999 9999999999766322321 1111111111
Q ss_pred CceEEEecCCcccCccc-hhheeeEcCHHHHHHHHHH-------HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHH
Q 012095 292 ERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (471)
Q Consensus 292 ~~~i~~~S~SK~~g~~G-~R~G~v~~~~~~i~~l~~~-------~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~ 363 (471)
| +-+|+|.++ .| +.+|.+++++++++.+... ....+++.++++..++.+.|+.-. + +++.+.
T Consensus 281 D----i~~~gK~lg-gG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~---~--~~l~~~ 350 (460)
T PRK06105 281 D----ILVMSKQLS-SSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIE---E--RDLVGN 350 (460)
T ss_pred C----eeeeecccc-cCcccceEEEEcHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHH---h--ccHHHH
Confidence 2 446899998 66 6899999999998877532 123567789999998888887421 1 123344
Q ss_pred HHHHHHHHHHHhcC---CCCCeeeCCCcceEEeEecCCccCCcccCCCC-CCCHHHHHHHHHHcCCEEEECCCCCCCCCc
Q 012095 364 FRERRDFLVKSFGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK-IENSESLCRYLLDKAQVALVPGDAFGDDTC 439 (471)
Q Consensus 364 ~~~~r~~l~~~L~~---~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~ 439 (471)
.++.-+++.+.|++ .+-+.-+... |+++-+.+....... ..+.. ......+...++++ ||.+.+. .+.
T Consensus 351 v~~~g~~l~~~L~~l~~~~~v~~vrG~-Gl~~gie~~~~~~~~-~~~~~~~~~a~~i~~~~~~~-Gvl~~~~-----g~~ 422 (460)
T PRK06105 351 AAERGARLQARLRALADHPLVGEVRGV-GLIAAVELVADKATK-TPFEPPGKVGARANAAAHEH-GVISRAM-----GDT 422 (460)
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEec-ceEEEEEEecCcccC-CCCCchhHHHHHHHHHHHHC-CeEEEec-----CCE
Confidence 44444444444444 3222222233 444445552210000 00000 00124677777765 9999873 247
Q ss_pred EEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012095 440 IRISYAA--SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 440 iRis~~~--~~e~i~~~~~~l~~~l~~~~ 466 (471)
+|++... +++++++++++|.++++++.
T Consensus 423 i~l~Ppl~it~~eid~~~~~l~~~l~~~~ 451 (460)
T PRK06105 423 LAFCPPLIITAAQVDEMVDRFGRALDDVA 451 (460)
T ss_pred EEEECCCccCHHHHHHHHHHHHHHHHHHH
Confidence 8998765 99999999999999998753
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-15 Score=153.48 Aligned_cols=352 Identities=15% Similarity=0.144 Sum_probs=209.0
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.+||+..|. ..++. ++.+.+|+.+++.+..+.........+.+..+++.+.+..+. -..+.++++++++++..
T Consensus 40 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~-~~~~~v~f~~sGsEAve 118 (449)
T PRK07481 40 DGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTFDGTTHPRAIELSYELIDMFAP-EGMRRVFFSSGGSDSVE 118 (449)
T ss_pred CCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhccceecccccCCHHHHHHHHHHHHhcCC-CCCCEEEEcCchHHHHH
Confidence 688899998775 33444 688999999998763321100112345566677777655431 12468999999999999
Q ss_pred HHHHHhcC-------CC-CeEEEcCCCCCChHHHHHHcCC-------------EEEEecCCCC--CCCc-CCHHHH----
Q 012095 170 QAVLAVCS-------PG-DEVIIPAPFWVSYPEMARIADA-------------TPVILPTRIS--ENFL-LDPKVL---- 221 (471)
Q Consensus 170 ~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~G~-------------~~~~v~~~~~--~~~~-ld~e~l---- 221 (471)
.+++.... +| ..|+....+|++....+..... .+..++.... ..|+ -|++.+
T Consensus 119 ~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~ 198 (449)
T PRK07481 119 TALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARIC 198 (449)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHH
Confidence 88886431 34 5788888888886543322211 1122221100 0111 133333
Q ss_pred ----Hhhhc----cCCcEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCc-cccccCCCCC
Q 012095 222 ----ESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMW 291 (471)
Q Consensus 222 ----~~~l~----~~~~~i~i~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~~~~ 291 (471)
++.+. +++.+|++...+.-.|. ..+++.++++.++|++| |+++|.||++..+...|... .....+.+
T Consensus 199 ~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~-g~llI~DEV~tGfGRtG~~~a~~~~gv~P-- 275 (449)
T PRK07481 199 ARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRH-GILLIADEVVTGFGRTGSWFGSRGWGVKP-- 275 (449)
T ss_pred HHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHc-CCEEEEeehhhCcCcCchhhHhhhcCCCC--
Confidence 33332 23455655444554565 56888999999999999 99999999998763333211 11111221
Q ss_pred CceEEEecCCcccCccc-hhheeeEcCHHHHHHHHHH-------HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHH
Q 012095 292 ERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (471)
Q Consensus 292 ~~~i~~~S~SK~~g~~G-~R~G~v~~~~~~i~~l~~~-------~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~ 363 (471)
| +-+++|.++ .| +.+|.+++++++++.+... ....+++.++++.+++.+.|+.- ++ +.+.++
T Consensus 276 D----iv~~gKgl~-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l---~~--~~l~~~ 345 (449)
T PRK07481 276 D----IMCLAKGIT-SGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIV---VR--EDLPAN 345 (449)
T ss_pred C----EEEEeeccc-CCCcCceEEEEcHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHH---Hh--hhHHHH
Confidence 2 444789998 78 5999999999999887531 23346778999998888888741 11 122333
Q ss_pred HHHHHHHHHHHhcC----CCCCeeeCCCcceEEeEecCCccCCcccCCC-CCCCHHHHHHHHHHcCCEEEECCCCCCCCC
Q 012095 364 FRERRDFLVKSFGE----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFG-KIENSESLCRYLLDKAQVALVPGDAFGDDT 438 (471)
Q Consensus 364 ~~~~r~~l~~~L~~----~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~ 438 (471)
.++.-+++.+.|++ .+-+.-.... |.++.+.+....... .... .......+.+.++++ ||++.+.. +
T Consensus 346 ~~~~g~~l~~~L~~l~~~~~~i~~vrG~-Glm~gi~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~-Gvl~~~~g-----~ 417 (449)
T PRK07481 346 AAKRGAYLLEGLQPLKERFELVGDVRGK-GLMLALDLVADKATR-EPIDPSKGYANAVADVAREN-GVLVRPSG-----T 417 (449)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEeec-ceEEEEEeccccccc-CCCCchhHHHHHHHHHHHhC-CeEEEecC-----C
Confidence 33344444444433 3222222333 444555553210000 0000 000134566777765 99998742 3
Q ss_pred cEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012095 439 CIRISYAA--SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 439 ~iRis~~~--~~e~i~~~~~~l~~~l~~~~ 466 (471)
.+||+... ++++|++++++|.++++++.
T Consensus 418 ~i~l~Ppl~it~~eid~~~~~l~~~l~~~~ 447 (449)
T PRK07481 418 KIILSPPLVIQREDVDRIVDALDAGLSAVP 447 (449)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 58898654 99999999999999998764
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.9e-16 Score=149.08 Aligned_cols=214 Identities=16% Similarity=0.138 Sum_probs=157.5
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEecCC
Q 012095 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTR 209 (471)
Q Consensus 134 ~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~G~~~~~v~~~ 209 (471)
...|.+.+++.. ...+.++++++..|+..++..|+.+|+.|+..+..|......+ ...|++...+.++
T Consensus 79 ~~~le~~iaal~--------ga~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~ 150 (409)
T KOG0053|consen 79 RDVLESGIAALE--------GAAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVD 150 (409)
T ss_pred hHHHHHHHHHHh--------CCceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechh
Confidence 455666666653 3456888888898999999999999999999999999887654 4678888877653
Q ss_pred CCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCC
Q 012095 210 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289 (471)
Q Consensus 210 ~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 289 (471)
+++.+++++.+++++||+.+|.||+..+.+ +++|.++|+++ |++|++|+.+....+ .....+
T Consensus 151 -------~~~~~~~~i~~~t~~V~~ESPsNPll~v~D---I~~l~~la~~~-g~~vvVDnTf~~p~~-----~~pL~l-- 212 (409)
T KOG0053|consen 151 -------DLKKILKAIKENTKAVFLESPSNPLLKVPD---IEKLARLAHKY-GFLVVVDNTFGSPYN-----QDPLPL-- 212 (409)
T ss_pred -------hHHHHHHhhccCceEEEEECCCCCcccccc---HHHHHHHHhhC-CCEEEEeCCcCcccc-----cChhhc--
Confidence 788999999999999999999999999999 99999999999 999999999975321 112222
Q ss_pred CCCceEEEecCCcccC-ccchhheeeEcC-HHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Q 012095 290 MWERTLTVNGFSKAFA-MTGWRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367 (471)
Q Consensus 290 ~~~~~i~~~S~SK~~g-~~G~R~G~v~~~-~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~ 367 (471)
+-.|++.|.+|.+| -.-.=.|.++.+ .++.+.+...+.....+++++.......-|. .+.-+.++..++
T Consensus 213 --GADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~~~~ll~Rglk-------tl~lRi~~~~en 283 (409)
T KOG0053|consen 213 --GADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPFDLFLLSRGLK-------TLHLRINKHSEN 283 (409)
T ss_pred --CCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCHHHHHHHhcCcc-------hhhhhHHHHHHH
Confidence 34499999999995 222445778885 8999999988888888888886544333332 222233334444
Q ss_pred HHHHHHHhcCCCCCe
Q 012095 368 RDFLVKSFGELEGVK 382 (471)
Q Consensus 368 r~~l~~~L~~~~g~~ 382 (471)
...+.+.|++.|.++
T Consensus 284 a~~~A~~Le~~~~v~ 298 (409)
T KOG0053|consen 284 ALKIALLLEAHPKVK 298 (409)
T ss_pred HHHHHHHhhhCCcee
Confidence 444555555544443
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-15 Score=152.85 Aligned_cols=346 Identities=16% Similarity=0.123 Sum_probs=212.2
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+++||+..|. ..++. ++.+.+++.+++.+..+ ++...-..+....+++.+.+..+. ..+.++++++++++.
T Consensus 46 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~-~~~~~~~~~~~~~la~~L~~~~p~--~~~~v~f~~sGseAv 122 (445)
T PRK09221 46 ADGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDY-APAFQMGHPLAFELAERLAELAPG--GLDHVFFTNSGSESV 122 (445)
T ss_pred CCCCEEEEccccHhhccCCCCCHHHHHHHHHHHHhccC-ccccccCCHHHHHHHHHHHHhCCC--CCCEEEEeCCcHHHH
Confidence 3688899998885 33444 78899999998875221 111111234555677777654431 236899999999999
Q ss_pred HHHHHHhcC-------C-CCeEEEcCCCCCChHHHHHHcCC-------------EEEEecCCC---CCCCcC--------
Q 012095 169 LQAVLAVCS-------P-GDEVIIPAPFWVSYPEMARIADA-------------TPVILPTRI---SENFLL-------- 216 (471)
Q Consensus 169 ~~~~~~l~~-------~-gd~Vlv~~p~y~~~~~~~~~~G~-------------~~~~v~~~~---~~~~~l-------- 216 (471)
..+++.... + ...|+....+|++....+...+. .+..+|... ...+..
T Consensus 123 e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (445)
T PRK09221 123 DTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAE 202 (445)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHH
Confidence 988886431 2 25788888888876533222111 122233211 000111
Q ss_pred CHHHHHhhhc----cCCcEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCC
Q 012095 217 DPKVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 291 (471)
Q Consensus 217 d~e~l~~~l~----~~~~~i~i~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~ 291 (471)
.++.+++.+. ++..+|++...+...|. ..+++.+++|.++|++| |+++|.||++..+.-.|.. ..+....-..
T Consensus 203 ~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~-g~llI~DEV~tG~GRtG~~-~~~~~~gv~P 280 (445)
T PRK09221 203 LADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKH-GILLIFDEVITGFGRLGAA-FAAERFGVTP 280 (445)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEeehhhCCCcCchh-hHHHhcCCCC
Confidence 1356666664 23445555545666776 45788899999999999 9999999999765322221 1111111111
Q ss_pred CceEEEecCCcccCccc-hhheeeEcCHHHHHHHHH-------HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHH
Q 012095 292 ERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK-------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (471)
Q Consensus 292 ~~~i~~~S~SK~~g~~G-~R~G~v~~~~~~i~~l~~-------~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~ 363 (471)
| +-+|+|.++ .| ..+|.+++++++++.+.. .....+++.++++..++.+.|+.- ++ +.+.++
T Consensus 281 D----i~~~gK~l~-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i---~~--~~l~~~ 350 (445)
T PRK09221 281 D----IITFAKGLT-NGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIY---RE--EDLFER 350 (445)
T ss_pred C----EEEeccccc-cCcccceeeEEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHH---Hh--ccHHHH
Confidence 2 457899997 66 689999999999887743 123356678999988888888741 11 134555
Q ss_pred HHHHHHHHHHHhcCCCC---CeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcE
Q 012095 364 FRERRDFLVKSFGELEG---VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 440 (471)
Q Consensus 364 ~~~~r~~l~~~L~~~~g---~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~i 440 (471)
.++.-+++.+.|+++.+ +.-+... |...-+.+..... .......++.+.|+++ ||++.++. +.+
T Consensus 351 ~~~~g~~l~~~l~~l~~~~~v~~vrg~-Gl~~~v~~~~~~~------~~~~~~~~~~~~~~~~-Gv~~~~~~-----~~l 417 (445)
T PRK09221 351 AAELAPYFEDAVHSLKGLPHVIDIRNI-GLVAGIELAPRPG------APGARGYEAFMKCFEK-GLLVRYTG-----DTI 417 (445)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEecC-ceEEEEEEecccc------cccchHHHHHHHHHHC-CeEEeecC-----CEE
Confidence 66666666666665422 2212222 3434444432100 0001245778888776 99987642 579
Q ss_pred EEEeec--CHHHHHHHHHHHHHHHHhh
Q 012095 441 RISYAA--SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 441 Ris~~~--~~e~i~~~~~~l~~~l~~~ 465 (471)
|++... ++++|++++++|++++.++
T Consensus 418 r~~Ppl~~t~~eid~~~~~l~~~l~~~ 444 (445)
T PRK09221 418 ALSPPLIIEKAQIDELVDALGDALRAV 444 (445)
T ss_pred EEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 999654 9999999999999998764
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-15 Score=154.38 Aligned_cols=341 Identities=13% Similarity=0.048 Sum_probs=210.6
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+.++|+..|. ..++. ++.+.+++.+++.+... +....-..+....+++.+.+..+. ..+.++++++++++.
T Consensus 41 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-~~~~~~~~~~~~~lae~L~~~~p~--~~~~v~f~~sGseAv 117 (429)
T PRK06173 41 KDGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSH-IMFGGFTHEPAVELAQKLLEILPP--SLNKIFFADSGSVAV 117 (429)
T ss_pred CCCCEEEEccchHHhccCCCCCHHHHHHHHHHHHhcCC-ccccccCCHHHHHHHHHHHhhCCC--CcCEEEEeCCchHHH
Confidence 3688899998875 33333 68899999998876321 111111234555666666554331 346999999999999
Q ss_pred HHHHHHhcC-------CC-CeEEEcCCCCCChHHHHH-HcCC-------------EEEEecCCCCC---CC-cCCHHHHH
Q 012095 169 LQAVLAVCS-------PG-DEVIIPAPFWVSYPEMAR-IADA-------------TPVILPTRISE---NF-LLDPKVLE 222 (471)
Q Consensus 169 ~~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~-~~G~-------------~~~~v~~~~~~---~~-~ld~e~l~ 222 (471)
..+++.... +| ..|+....+|++....+. ..|. .+..+|..... .+ .-+++.++
T Consensus 118 e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~ 197 (429)
T PRK06173 118 EVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQ 197 (429)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCcccchhHHHHHHHHHH
Confidence 988886531 33 568888888887532221 1111 11222221100 00 01466677
Q ss_pred hhhc---cCCcEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEE
Q 012095 223 SKLT---EKSRLLILCSP-SNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTV 297 (471)
Q Consensus 223 ~~l~---~~~~~i~i~~p-~NPtG~~-~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~ 297 (471)
+.+. ++..+|++... +.-.|.. .+++.+++|.++|++| |+++|.||++..+-..|.. .......-..| |+
T Consensus 198 ~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~-g~llI~DEv~tG~GrtG~~-~a~~~~gv~PD--iv- 272 (429)
T PRK06173 198 DLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQY-GVLLIFDEIATGFGRTGKL-FALEHAGVVPD--IM- 272 (429)
T ss_pred HHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHc-CCeEEecchhcCCCcCCcc-hHHHhcCCCCC--EE-
Confidence 7774 24455555442 5656754 7889999999999999 9999999999765222221 01111111112 33
Q ss_pred ecCCcccCccc-hhheeeEcCHHHHHHHHH-----HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHH
Q 012095 298 NGFSKAFAMTG-WRLGYIAGPKHFVAACNK-----IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 371 (471)
Q Consensus 298 ~S~SK~~g~~G-~R~G~v~~~~~~i~~l~~-----~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l 371 (471)
+|+|.++ .| +.+|.+++++++.+.+.. .....+++.++++.+++.+.|+.- ++ +...++.+++-+++
T Consensus 273 -~~gK~l~-gG~~p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i---~~--~~~~~~~~~~g~~l 345 (429)
T PRK06173 273 -CIGKALT-GGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLL---LE--SPWQQNIQRIEAQL 345 (429)
T ss_pred -Eeehhhh-CCccccceEEecHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHH
Confidence 3899997 78 478889999999888753 122235567888888888888741 11 12344455555556
Q ss_pred HHHhcCC---CCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--
Q 012095 372 VKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-- 446 (471)
Q Consensus 372 ~~~L~~~---~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~-- 446 (471)
.+.|+++ +.+.-... -|..+-+.+... .+...+.+.|+++ ||++.+.. +.+|+....
T Consensus 346 ~~~L~~~~~~~~v~~vRg-~Gl~~~iel~~~-----------~~~~~i~~~l~e~-Gi~v~~~g-----~~l~~~Ppl~i 407 (429)
T PRK06173 346 KQELAPAAEFDSVAEVRV-LGAIGVVEMKEP-----------VNMATLQPRFVEH-GIWVRPFG-----KLVYIMPPFII 407 (429)
T ss_pred HHHHHHhhcCCCeeeeec-cceEEEEEeCCc-----------ccHHHHHHHHHHC-CeEEEecC-----CEEEEeCCccC
Confidence 6655543 22211122 344455666432 1356788888776 99997742 479998775
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q 012095 447 SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 447 ~~e~i~~~~~~l~~~l~~~ 465 (471)
+++++++++++|++++.++
T Consensus 408 t~~ei~~~~~~l~~~l~~~ 426 (429)
T PRK06173 408 SPDELSQLTSGLLRVLKQE 426 (429)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999764
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-15 Score=151.68 Aligned_cols=316 Identities=21% Similarity=0.197 Sum_probs=196.8
Q ss_pred ChHHHHHHHHHHHHcCC-CCCCCC---CC--CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeE
Q 012095 109 TPVLIAEAGINAIREGF-TRYTPN---AG--TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEV 182 (471)
Q Consensus 109 ~p~~v~~a~~~~~~~~~-~~Y~~~---~G--~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~V 182 (471)
.|+.+.+++.+++.... ..|... .| +..+++.+++++ | .++.+++++++.++..++.+ +.+||+|
T Consensus 98 l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~----G----ae~a~vv~sgtaAl~l~l~~-l~~GdeV 168 (464)
T PRK04311 98 LSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALT----G----AEDALVVNNNAAAVLLALNA-LAAGKEV 168 (464)
T ss_pred CCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHh----C----CCeEEEECCHHHHHHHHHHH-hCCCCEE
Confidence 47888999988875421 122211 12 135555555554 4 34677888888999888865 5799999
Q ss_pred EEcCCCCCC------hHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCC--cc--cCCCHHHHHH
Q 012095 183 IIPAPFWVS------YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNP--TG--SVYPKNLLDE 252 (471)
Q Consensus 183 lv~~p~y~~------~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NP--tG--~~~~~~~l~~ 252 (471)
++++..+.. ....++..|++++.++... ..++++++++++++|++|++.+++|| +| ...+ +++
T Consensus 169 Ivs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~----~t~~~dle~aI~~~TklV~~vh~sN~~i~G~~~~~d---l~e 241 (464)
T PRK04311 169 IVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTN----RTHLRDYEQAINENTALLLKVHTSNYRIEGFTKEVS---LAE 241 (464)
T ss_pred EEcchhhhhcCcchhhHHHHHHCCcEEEEECCCC----CCCHHHHHHhcCccCeEEEEEcCCCccccccCCcCC---HHH
Confidence 998864431 2345678899999998642 24799999999999999999999998 34 4567 999
Q ss_pred HHHHHHhCCCeEEEEccCCCcc----ccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHH--
Q 012095 253 IARIVAKHPRLLVLSDEIYEHI----IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK-- 326 (471)
Q Consensus 253 i~~l~~~~~~~~ii~De~y~~~----~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~-- 326 (471)
|+++|++| ++++|+|...+.+ .++-...+.+... ...+-.+++.|.+|.+| |-..|++++++++++++++
T Consensus 242 I~~lak~~-gi~vivD~gsG~l~~~~~~gl~~~p~~~~~-l~~GaDiv~fSg~K~Lg--Gp~~G~i~g~~~li~~l~~~~ 317 (464)
T PRK04311 242 LAALGKEH-GLPVVYDLGSGSLVDLSQYGLPDEPTVQEL-LAAGVDLVTFSGDKLLG--GPQAGIIVGKKELIARLKKHP 317 (464)
T ss_pred HHHHHHHc-CCeEEEECCCcccccchhccCCCCCchhhH-HhcCCcEEEecCccccc--CCceEEEEEcHHHHHHHhhch
Confidence 99999999 9999999965433 1210111222221 11355699999999986 3358999999999988763
Q ss_pred HHhcccCCCChHHHHHHHHHHhccCC-Ch--------HHHHHHHHHHHHHHHHHHHHhcCCC--CC--eeeCC----Cc-
Q 012095 327 IQSQFTSGASSISQKAGVAALGLGYA-GG--------EVVSKMVKAFRERRDFLVKSFGELE--GV--KMSEP----QG- 388 (471)
Q Consensus 327 ~~~~~~~~~~~~~q~aa~~~L~~~~~-~~--------~~~~~~~~~~~~~r~~l~~~L~~~~--g~--~~~~p----~~- 388 (471)
+.+... .......+..+.|..... .. ..+....++..++.+.+.+.|.+.+ ++ ++.+. .|
T Consensus 318 ~~r~lr--~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~ggg 395 (464)
T PRK04311 318 LKRALR--VDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGGG 395 (464)
T ss_pred hHHHHh--cchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCCC
Confidence 222221 223333333333331000 01 1123334566677888888887753 32 33321 11
Q ss_pred --------ceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHc-CCEEEECCCCCCCCCcEEEEeec-CHHHHHHHHHHH
Q 012095 389 --------AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK-AQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERI 458 (471)
Q Consensus 389 --------g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~-~gV~v~pg~~f~~~~~iRis~~~-~~e~i~~~~~~l 458 (471)
++-+.++... .+..++.++|.+- -.|+.+. .++.+.+.+.+ .+++++..+++|
T Consensus 396 s~p~~~~~~~~v~~~~~~------------~~~~~l~~~lr~~~~~i~~r~-----~~~~~~ld~r~~~~~~~~~~~~~~ 458 (464)
T PRK04311 396 SLPVDRLPSAAVTLTPKD------------RSLEALAARLRLLPPPVIGRI-----EDGRLLLDLRTLEEEDEERLAAAL 458 (464)
T ss_pred CCcCCCCCeEEEEEeCCC------------CCHHHHHHHHhcCCCCEEEEE-----ECCEEEEEeCcCCHHHHHHHHHHH
Confidence 1222222211 2567888876532 1244432 35678888887 888999999999
Q ss_pred HHHHH
Q 012095 459 KKGLL 463 (471)
Q Consensus 459 ~~~l~ 463 (471)
.+++.
T Consensus 459 ~~~~~ 463 (464)
T PRK04311 459 LEALN 463 (464)
T ss_pred HHHhh
Confidence 88753
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3e-15 Score=153.55 Aligned_cols=348 Identities=14% Similarity=0.129 Sum_probs=208.4
Q ss_pred cCCCeEEcCCCC-CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHH
Q 012095 93 AGVSVIRLAAGE-PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQ 170 (471)
Q Consensus 93 ~g~~~i~l~~g~-~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~ 170 (471)
.|+.+||+..+. ..++. +|.+.+++.+++.+.. +....-..+.+..+++.+.+..+. ..+.+++++++++++..
T Consensus 70 dG~~ylD~~g~~~~~lGh~~p~v~~Ai~~ql~~~~--~~~~~~~~~~~~~lae~L~~~~p~--~~~~v~f~~sGseAve~ 145 (459)
T PRK06082 70 DGKKYMDFHGNNVHQLGYGHPHVIEKVKEQMAKLP--FSPRRFTNETAIECAEKLTEIAGG--ELNRVLFAPGGTSAIGM 145 (459)
T ss_pred CCCEEEEcccHhhcccCCCCHHHHHHHHHHHHhCC--CccCccCCHHHHHHHHHHHHhCCC--CCCEEEECCCcHHHHHH
Confidence 688899987432 33453 7889999999987532 222222346666777777665542 23689999999999998
Q ss_pred HHHHhcC-C-CCeEEEcCCCCCChHH-HHHHcCCE------------EEEecCCCCC--CCc-C------CHHHHHhhhc
Q 012095 171 AVLAVCS-P-GDEVIIPAPFWVSYPE-MARIADAT------------PVILPTRISE--NFL-L------DPKVLESKLT 226 (471)
Q Consensus 171 ~~~~l~~-~-gd~Vlv~~p~y~~~~~-~~~~~G~~------------~~~v~~~~~~--~~~-l------d~e~l~~~l~ 226 (471)
+++.... . ...|+....+|++... .....|.. +..+|..... .|. . +++.+++.+.
T Consensus 146 AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 225 (459)
T PRK06082 146 ALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIE 225 (459)
T ss_pred HHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHh
Confidence 8876531 2 3678888888877653 33222221 1222211000 010 0 1355777664
Q ss_pred c--CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCccc
Q 012095 227 E--KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 304 (471)
Q Consensus 227 ~--~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 304 (471)
. +..+|++...++..+...+++.+++|.++|++| |+++|.||++..+--.|.. .......-..| |+ +|+|.+
T Consensus 226 ~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~-g~llI~DEV~tG~GRtG~~-fa~e~~gv~PD--iv--~~gKgl 299 (459)
T PRK06082 226 KEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKH-NVLLIIDEIPNGMGRTGEW-FTHQAYGIEPD--IL--CIGKGL 299 (459)
T ss_pred cCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhCCCccchh-hHhHhhCCCCC--EE--Eecccc
Confidence 2 344555544455556678889999999999999 9999999999875322321 01111111112 33 389999
Q ss_pred Cccc-hhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC----CC
Q 012095 305 AMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE----LE 379 (471)
Q Consensus 305 g~~G-~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~----~~ 379 (471)
| .| +.+|.+++++++.+.........+++.++++.+++.+.|+.- ++ +.+.++.+++-+++.+.|++ .+
T Consensus 300 ~-gG~~P~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l---~~--~~l~~~~~~~g~~l~~~L~~l~~~~~ 373 (459)
T PRK06082 300 G-GGLVPIAAMITKDKYNTAAQISLGHYTHEKSPLGCAAALATIEVI---EQ--EGLLEKVKADSQFMRERLLEMKAKYP 373 (459)
T ss_pred c-CCCCcceEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHH---Hh--cCHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 8 77 599999999887654321111257778999988888888741 11 12344444444555555444 32
Q ss_pred CCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHH
Q 012095 380 GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVER 457 (471)
Q Consensus 380 g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~ 457 (471)
-+.-+...| .++.+.+...... ... .......+...++++ ||++.+.. .+.+|++... ++++|++++++
T Consensus 374 ~i~~vrG~G-l~~~ve~~~~~~~--~~~-~~~~~~~~~~~~~~~-Gvl~~~~~----~~~i~~~Ppl~it~~eid~~~~~ 444 (459)
T PRK06082 374 LIGDVRGIG-LLWGVELVTDRHT--KER-AYDEAEAVLYRCLNN-GLSFKVSQ----GNVIQLSPPLIITREELTQALAI 444 (459)
T ss_pred Ceeeeeecc-ceeEEEEccCccc--cCc-cHHHHHHHHHHHHhC-CCEEEecC----CCEEEEeCCCccCHHHHHHHHHH
Confidence 222223344 4455555321000 000 000134567777765 99987732 3679998664 99999999999
Q ss_pred HHHHHHhh
Q 012095 458 IKKGLLTL 465 (471)
Q Consensus 458 l~~~l~~~ 465 (471)
+++++.++
T Consensus 445 l~~~l~~~ 452 (459)
T PRK06082 445 LEEAIAKI 452 (459)
T ss_pred HHHHHHHH
Confidence 99999775
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-15 Score=151.76 Aligned_cols=338 Identities=16% Similarity=0.096 Sum_probs=217.5
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCC-------CCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CcEEEeCChH
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGF-------TRYTPNAGTLELRSAICHKLKEENGLSYTP--DQILVSNGAK 165 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~-------~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~--~~i~it~G~~ 165 (471)
...|.|-..++.. .+.+.+++...+.+.+ -.|+....+.++.....++..+.||.+... -||-.- +++
T Consensus 148 ~~~l~LIASEN~~--S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~-SGs 224 (586)
T PLN02271 148 FKGIELIASENFV--CRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPY-SCT 224 (586)
T ss_pred hcCeeeccccccC--CHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeec-cHH
Confidence 3457776676653 5566676665554422 123334445567666677777778854332 355555 455
Q ss_pred HHHHHHHHHhcCCCCeEEEcCCCCCChHHH---------HHHcCCEEEEec--CCCCCCCcCCHHHHHh-hhccCCcEEE
Q 012095 166 QSILQAVLAVCSPGDEVIIPAPFWVSYPEM---------ARIADATPVILP--TRISENFLLDPKVLES-KLTEKSRLLI 233 (471)
Q Consensus 166 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~---------~~~~G~~~~~v~--~~~~~~~~ld~e~l~~-~l~~~~~~i~ 233 (471)
.|+..++.+|++|||+|+..+..|.++... +...|..+..++ ++. ....+|.+++++ +...+||+|+
T Consensus 225 ~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~-~~g~IDyd~lek~a~~~rPKLII 303 (586)
T PLN02271 225 SANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNP-QTGYIDYDKLEEKALDFRPKILI 303 (586)
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEccccc-ccCccCHHHHHHHhhhcCCeEEE
Confidence 567778899999999999988777665432 233455544444 543 345699999998 5678999998
Q ss_pred EcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhhee
Q 012095 234 LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 313 (471)
Q Consensus 234 i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~ 313 (471)
+..-.|| ..++ +++|.++|+++ ++++++|.++......+...++.. ....++.+|.+|++ .|-|-|.
T Consensus 304 ~g~Sayp--r~~D---~~~i~eIAdev-GA~LmvD~AH~aGLIa~g~~~sP~-----~~aDvvt~TTHKtL--rGPrGG~ 370 (586)
T PLN02271 304 CGGSSYP--REWD---YARFRQIADKC-GAVLMCDMAHISGLVAAKECVNPF-----DYCDIVTSTTHKSL--RGPRGGI 370 (586)
T ss_pred ECchhcc--CcCC---HHHHHHHHHHc-CCEEEEECcccccccccCcCCCCC-----cCCcEEEeCCcccC--CCCCceE
Confidence 8666777 5677 88889999999 999999999986544332222111 12348999999997 5667788
Q ss_pred eEcCHH--------------------HHHHHHHHHhccc-CCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHH
Q 012095 314 IAGPKH--------------------FVAACNKIQSQFT-SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 372 (471)
Q Consensus 314 v~~~~~--------------------~i~~l~~~~~~~~-~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~ 372 (471)
++.+++ +.+++.+...+.. .++.....++...++.+.. .....+..+...++.+.|.
T Consensus 371 I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~--~~efk~Ya~QVv~NAkaLA 448 (586)
T PLN02271 371 IFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVA--TPEYKAYMQQVKKNAQALA 448 (586)
T ss_pred EEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHH
Confidence 887653 4455544433322 2222222233333444211 1223667777788889999
Q ss_pred HHhcCCCCCeeeC-CCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC-----CCCcEEEEeec
Q 012095 373 KSFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-----DDTCIRISYAA 446 (471)
Q Consensus 373 ~~L~~~~g~~~~~-p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~-----~~~~iRis~~~ 446 (471)
+.|.+. |+++.. ...+..+++++... + ..-..++++|++.||.+..-..++ .++.|||....
T Consensus 449 ~~L~~~-G~~vv~ggTdnHlvLvDl~~~-g----------~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~psGiRiGT~a 516 (586)
T PLN02271 449 SALLRR-KCRLVTGGTDNHLLLWDLTTL-G----------LTGKNYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPA 516 (586)
T ss_pred HHHHHC-CCeEeeCCCCcceeeecCccc-C----------CCHHHHHHHHHHcCeEeccccCCCCCCCCCCCcccccCHH
Confidence 999887 887753 33456788888543 1 233556667888899875543332 24679997653
Q ss_pred ------CHHHHHHHHHHHHHHHH
Q 012095 447 ------SLTTLQAAVERIKKGLL 463 (471)
Q Consensus 447 ------~~e~i~~~~~~l~~~l~ 463 (471)
.++++++..+-|.++++
T Consensus 517 lT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 517 MTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHh
Confidence 56888888888888776
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3e-15 Score=152.01 Aligned_cols=340 Identities=14% Similarity=0.084 Sum_probs=208.4
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+.+||+..|. ..++. ++.+.+++.+++.+..+.. ...-..+....+++.+.+..+. ..+.++++++++++.
T Consensus 37 ~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~-~~~~~~~~~~~lae~L~~~~p~--~~~~v~f~~SGseA~ 113 (422)
T PRK05630 37 EDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHVM-FGGLTHEPAIKLTRKLLNLTDN--GLDHVFYSDSGSVSV 113 (422)
T ss_pred CCCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCCCcc-cCCcCCHHHHHHHHHHHhhCCC--CcCEEEEeCCcHHHH
Confidence 3688899998886 33444 7899999999987632211 1011234455566666544331 236899999999999
Q ss_pred HHHHHHhcC-------CC-CeEEEcCCCCCChHHHHHHc-CC-------------EEEEecCCCCCCCcC-C----HHHH
Q 012095 169 LQAVLAVCS-------PG-DEVIIPAPFWVSYPEMARIA-DA-------------TPVILPTRISENFLL-D----PKVL 221 (471)
Q Consensus 169 ~~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~-G~-------------~~~~v~~~~~~~~~l-d----~e~l 221 (471)
..+++.... ++ ..|+....+|++....+... +. ....+|......... + .+.+
T Consensus 114 e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 193 (422)
T PRK05630 114 EVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSL 193 (422)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccCCChHHHHHHHHHH
Confidence 988886431 33 56888888888754333221 11 122233221110000 1 2345
Q ss_pred HhhhccCCcEEEEcC-CCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEec
Q 012095 222 ESKLTEKSRLLILCS-PSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 299 (471)
Q Consensus 222 ~~~l~~~~~~i~i~~-p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S 299 (471)
++.+.++..+|++.- .+.-.|. ..+.+.+++|.++|++| ++++|.||++..+-..|.. .......-..| |+ +
T Consensus 194 ~~~~~~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~-g~llI~DEv~tG~GrtG~~-~a~~~~gv~PD--i~--t 267 (422)
T PRK05630 194 ELLIDETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKH-DILLIADEIATGFGRTGEL-FATLAAGVTPD--IM--C 267 (422)
T ss_pred HHHHhhceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHc-CCEEEEecceeCCCcCchh-hHHHhcCCCCC--ee--e
Confidence 555555666666654 2665676 56788999999999999 9999999999776322221 11111111111 33 7
Q ss_pred CCcccCccc-hhheeeEcCHHHHHHHHHH------HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHH
Q 012095 300 FSKAFAMTG-WRLGYIAGPKHFVAACNKI------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 372 (471)
Q Consensus 300 ~SK~~g~~G-~R~G~v~~~~~~i~~l~~~------~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~ 372 (471)
|+|.++ .| ..+|++++++++.+.+... ....+++.++++..++.++|+.-.. +.+ .++.+++-+++.
T Consensus 268 ~gK~l~-gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~-~~~----~~~~~~~g~~l~ 341 (422)
T PRK05630 268 VGKALT-GGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIET-GMW----RKQVKRIEAELI 341 (422)
T ss_pred eechhh-cCccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHh-CcH----HHHHHHHHHHHH
Confidence 899986 67 4899999999999887531 2234667889998888888875211 122 223333334444
Q ss_pred HHhc---CCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--C
Q 012095 373 KSFG---ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--S 447 (471)
Q Consensus 373 ~~L~---~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~ 447 (471)
+.|+ +.+.+.-+... |.++-+.+... .+...+.+.++++ ||++.+. + +.+|+.... +
T Consensus 342 ~~L~~l~~~~~v~~vRg~-Gl~~~ie~~~~-----------~~~~~~~~~~~~~-Gl~~~~~---g--~~l~~~PpL~it 403 (422)
T PRK05630 342 AGLSPLAHLPGVADVRVL-GAIGVVEMEQP-----------VDMEEATQAAVDH-GVWLRPF---G--RLVYVMPPYITT 403 (422)
T ss_pred HHHHHhhcCCCeeeeecc-ccEEEEEECCc-----------ccHHHHHHHHHHC-CeEEEec---C--CEEEEECCccCC
Confidence 4343 33333222223 44466666432 1355788887776 9998763 2 578988764 9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 012095 448 LTTLQAAVERIKKGLLT 464 (471)
Q Consensus 448 ~e~i~~~~~~l~~~l~~ 464 (471)
++++++++++|+++++.
T Consensus 404 ~~~i~~~~~~l~~al~~ 420 (422)
T PRK05630 404 SEQIAQICAALAAAVKA 420 (422)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999864
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-15 Score=152.59 Aligned_cols=354 Identities=15% Similarity=0.099 Sum_probs=208.2
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+.+||+..|. ..++. ++.+.+++.+++.+............+.+..+++.+.+..+. ..+.++++++++++.
T Consensus 47 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~--~~~~v~f~~SGseA~ 124 (456)
T PRK07480 47 SEGNKILDGMAGLWCVNVGYGRKELADAAARQMRELPYYNTFFKTTHPPAIELAAKLAEVAPP--GFNHVFFTNSGSEAN 124 (456)
T ss_pred CCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHHhCCC--CcCEEEEeCCcHHHH
Confidence 3688899998875 33444 788999999998763221111123356667777777655432 246899999999999
Q ss_pred HHHHHHhcC-------CC-CeEEEcCCCCCChHHHHHHc-CCE------------EEEecCCC--CCCCcCC--------
Q 012095 169 LQAVLAVCS-------PG-DEVIIPAPFWVSYPEMARIA-DAT------------PVILPTRI--SENFLLD-------- 217 (471)
Q Consensus 169 ~~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~-G~~------------~~~v~~~~--~~~~~ld-------- 217 (471)
..+++.... +| ..|+...-+|++....+... |.. +..++... ...+..+
T Consensus 125 e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 204 (456)
T PRK07480 125 DTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAA 204 (456)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHHHHH
Confidence 988876521 33 46888888888754322221 111 11122110 0000011
Q ss_pred HHHHHhhhc----cCCcEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCC
Q 012095 218 PKVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292 (471)
Q Consensus 218 ~e~l~~~l~----~~~~~i~i~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 292 (471)
++.+++.+. ++..+|++...+.-.|. ..+.+.+++|.++|++| |+++|.||++..|--.|.. ..+....-..|
T Consensus 205 ~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~-g~llI~DEV~tGfGRtG~~-~a~~~~gv~PD 282 (456)
T PRK07480 205 ARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKY-DILLVADEVICGFGRTGEW-FGSQHFGIKPD 282 (456)
T ss_pred HHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcCcch-hhhhhcCCCCC
Confidence 255655442 24456666544554665 56788899999999999 9999999999876322221 11111111112
Q ss_pred ceEEEecCCcccCccch-hheeeEcCHHHHHHHHH----HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Q 012095 293 RTLTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNK----IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367 (471)
Q Consensus 293 ~~i~~~S~SK~~g~~G~-R~G~v~~~~~~i~~l~~----~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~ 367 (471)
+-+|+|.++ .|. .+|.+++++++.+.+.. .....+++.++++.+++.+.|+.-.. ++.+++.. +++
T Consensus 283 ----iv~~gK~l~-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~-~~l~~~~~---~~~ 353 (456)
T PRK07480 283 ----LMTIAKGLT-SGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRD-EGIVERVR---DDT 353 (456)
T ss_pred ----eeeeehhhc-cCCccceEEEEcHHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHh-CCHHHHHH---HHH
Confidence 446899998 784 89999999999887732 22345778899999999998875211 12222221 122
Q ss_pred HHHHHHHh---cCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCC-CHHHHHHHHHHcCCEEEECCCCCCCCCcEEEE
Q 012095 368 RDFLVKSF---GELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE-NSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 443 (471)
Q Consensus 368 r~~l~~~L---~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis 443 (471)
-+++.+.| .+.+-+.-+... |+++-+.+-+... ....+.... ....+.+.++++ ||.+.+. .+.+|++
T Consensus 354 g~~l~~~l~~l~~~~~i~~vrG~-Glm~gie~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-Gll~~~~-----~~~l~~~ 425 (456)
T PRK07480 354 GPYLQKRLRELADHPLVGEVRGV-GLVGAIELVKDKA-TRERFEAGGGVGTICRDHCFAN-GLIMRAV-----GDRMIIS 425 (456)
T ss_pred HHHHHHHHHHhhcCCCeeeEEee-cceEEEEEecccc-ccccCcchhhHHHHHHHHHHHC-CcEEeec-----CCEEEEE
Confidence 33333333 333222222333 3445555522100 000000000 124566667765 9998763 2578998
Q ss_pred eec--CHHHHHHHHHHHHHHHHhhC
Q 012095 444 YAA--SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 444 ~~~--~~e~i~~~~~~l~~~l~~~~ 466 (471)
... ++++|++++++|.+++.+++
T Consensus 426 Ppl~it~~eid~~~~~l~~al~~~~ 450 (456)
T PRK07480 426 PPLVITHAEIDELVEKARKALDATA 450 (456)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 887 99999999999999998763
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.3e-15 Score=151.80 Aligned_cols=357 Identities=15% Similarity=0.099 Sum_probs=206.2
Q ss_pred hcCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcEEEe-CChHH
Q 012095 92 QAGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVS-NGAKQ 166 (471)
Q Consensus 92 ~~g~~~i~l~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~-~~i~it-~G~~~ 166 (471)
..|+.+||+..|.. .++. ++.+.+++.+++.+..... ...-..+.+..+++.+.+........ +.++++ +++++
T Consensus 60 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~-~~~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSE 138 (464)
T PRK06938 60 VEGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLH-TLDLTTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTD 138 (464)
T ss_pred CCCCEEEEccCCccccccCCCCHHHHHHHHHHHHhhhccc-ccccCCHHHHHHHHHHHHhCcccccccceEEEeCCCcHH
Confidence 36888999988863 3443 7889999999886532111 11112355556666665433211111 356564 78899
Q ss_pred HHHHHHHHhc-CCC-CeEEEcCCCCCChHHHHHHc-CC------------EEEEecCCCCC--CCc--------CCHHHH
Q 012095 167 SILQAVLAVC-SPG-DEVIIPAPFWVSYPEMARIA-DA------------TPVILPTRISE--NFL--------LDPKVL 221 (471)
Q Consensus 167 al~~~~~~l~-~~g-d~Vlv~~p~y~~~~~~~~~~-G~------------~~~~v~~~~~~--~~~--------ld~e~l 221 (471)
+...+++... -+| ..|+....+|++....+... |. .+..+|..... .+. .+++.+
T Consensus 139 Ave~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l 218 (464)
T PRK06938 139 AVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYL 218 (464)
T ss_pred HHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHH
Confidence 9998888653 234 67888888888766443321 10 12233332110 000 136677
Q ss_pred Hhhhcc------CCcEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCce
Q 012095 222 ESKLTE------KSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 294 (471)
Q Consensus 222 ~~~l~~------~~~~i~i~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~ 294 (471)
++.+.+ ++.+|++...+.-.|. ..+++.++++.++|++| |+++|.||+..+|--.|.. .....+.-..|
T Consensus 219 ~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~-giLlI~DEV~tGfGRtG~~-~a~e~~gv~PD-- 294 (464)
T PRK06938 219 ENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEA-GIPLIVDEIQSGFGRTGKM-FAFEHAGIIPD-- 294 (464)
T ss_pred HHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCcHH-HHHHhcCCCCC--
Confidence 777753 2445555333433465 56799999999999999 9999999999887322311 11111111111
Q ss_pred EEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHH
Q 012095 295 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 374 (471)
Q Consensus 295 i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~ 374 (471)
+-+++|.+| .|+.+|.+++++++ +.+.......+++.++++.+++.+.|+.-. + +++.++.++.-+++.+.
T Consensus 295 --iv~~gKglg-gG~PlsAv~~~~~~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~--~---~~l~~~~~~~G~~l~~~ 365 (464)
T PRK06938 295 --VVVLSKAIG-GSLPLAVVVYREWL-DTWQPGAHAGTFRGNQMAMAAGSATLRYIK--E---HRLAEHAAAMGERLREH 365 (464)
T ss_pred --EEEeecccc-CCCceEEEeehhHh-hccCCCCCCCCCCcCHHHHHHHHHHHHHHH--H---hHHHHHHHHHHHHHHHH
Confidence 444789998 89999999998774 544322334577789999999998887411 1 12223333333333333
Q ss_pred hcC----CCCCeeeCCCcceEEeEecCCccCCc-ccCCCC--CCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec-
Q 012095 375 FGE----LEGVKMSEPQGAFYLFIDFSTYYGSE-AEGFGK--IENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA- 446 (471)
Q Consensus 375 L~~----~~g~~~~~p~~g~~~~~~~~~~~~~~-~~~~~~--~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~- 446 (471)
|++ .+.+.-+... |.++.+.+....... ..+... ......+...++++ ||++.++..+ .+.+|+....
T Consensus 366 L~~l~~~~~~i~~VrG~-Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gll~~~~g~~--~~~l~~~Ppl~ 441 (464)
T PRK06938 366 LRQLQRDYPQLGDVRGR-GLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRR-GLILELGGRH--GSVVRFLPPLI 441 (464)
T ss_pred HHHHHHhCCCeeeeecc-ceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHC-CeEEeecCCC--CCEEEEECCCc
Confidence 333 3322222333 444555553210000 000000 00134567777765 9999875322 3678887554
Q ss_pred -CHHHHHHHHHHHHHHHHhhC
Q 012095 447 -SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 447 -~~e~i~~~~~~l~~~l~~~~ 466 (471)
++++++++++++.+++.++.
T Consensus 442 it~~eid~~~~~l~~~l~~~~ 462 (464)
T PRK06938 442 ITAEQIDEVAEIFAEAVAAAV 462 (464)
T ss_pred cCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998753
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5e-15 Score=152.15 Aligned_cols=351 Identities=14% Similarity=0.125 Sum_probs=209.3
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHH
Q 012095 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNA-GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (471)
Q Consensus 92 ~~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~-G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~a 167 (471)
..|+.+||+..|. ..++. +|.+.+++.+++.+..+.. +.. ...+.+..+++.+.+.... ..+.++++++++++
T Consensus 48 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~-~~~~~~~~~~~~lae~L~~~~p~--~~~~v~f~~sGseA 124 (466)
T PRK07036 48 ADGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYT-PFGDMTNAPAAELAAKLAELAPG--DLNHVFLTTGGSTA 124 (466)
T ss_pred CCCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCcccc-cccccCCHHHHHHHHHHHHhCCC--CcCEEEEeCCchHH
Confidence 3688899998886 33443 7889999999887632111 111 2345667777777655431 23689999999999
Q ss_pred HHHHHHHhc------C-CC-CeEEEcCCCCCChHHHHHHcCC-------------EEEEecCCCC--CCCcCC-------
Q 012095 168 ILQAVLAVC------S-PG-DEVIIPAPFWVSYPEMARIADA-------------TPVILPTRIS--ENFLLD------- 217 (471)
Q Consensus 168 l~~~~~~l~------~-~g-d~Vlv~~p~y~~~~~~~~~~G~-------------~~~~v~~~~~--~~~~ld------- 217 (471)
+..+++... . +| ..|+....+|++....+..... .+..++.... ..++.+
T Consensus 125 ve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 204 (466)
T PRK07036 125 VDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDF 204 (466)
T ss_pred HHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHHHHHH
Confidence 998888642 1 22 5788888888876543322211 1222322110 001111
Q ss_pred -HHHHHhhhc----cCCcEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCcc-c-cccCCC
Q 012095 218 -PKVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT-S-FASLPG 289 (471)
Q Consensus 218 -~e~l~~~l~----~~~~~i~i~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~-~-~~~~~~ 289 (471)
++.+++.+. ++..+|++...+.-.|. ..+++.+++|.++|++| ++++|.||++..|--.|.... . ...+.+
T Consensus 205 ~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~-g~llI~DEV~tGfGRtG~~~~~~~~~gv~P 283 (466)
T PRK07036 205 LVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRY-DILYISDEVVTGFGRLGHFFASEAVFGIQP 283 (466)
T ss_pred HHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeechhCCCcCchhhhhhhhcCCCC
Confidence 234455442 23445555444555565 56888999999999999 999999999987632221100 0 112221
Q ss_pred CCCceEEEecCCcccCccc-hhheeeEcCHHHHHHHHH-------HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHH
Q 012095 290 MWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK-------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 361 (471)
Q Consensus 290 ~~~~~i~~~S~SK~~g~~G-~R~G~v~~~~~~i~~l~~-------~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~ 361 (471)
| +-+|+|.++ .| +.+|.+++++++.+.+.. .....+++.++++.+++.+.|+.- ++ +++.
T Consensus 284 --D----ivt~gK~l~-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i---~~--~~l~ 351 (466)
T PRK07036 284 --D----IITFAKGLT-SGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIM---ER--EGLC 351 (466)
T ss_pred --C----EEEEccccc-cCccccEEEEEcHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHH---Hh--CCHH
Confidence 2 446799998 78 489999999999988753 122346678999999998888741 11 1233
Q ss_pred HHHHHHHHHHHHHhc---CCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCC
Q 012095 362 KAFRERRDFLVKSFG---ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT 438 (471)
Q Consensus 362 ~~~~~~r~~l~~~L~---~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~ 438 (471)
+..++.-+++.+.|+ +.+-+.-.... |.++.+.+...................+.+.++++ ||++.+.. +
T Consensus 352 ~~~~~~g~~l~~~L~~l~~~~~v~~vrG~-Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gvl~~~~~-----~ 424 (466)
T PRK07036 352 EHVREVGPYFEERLASLRELPLVGDVRGD-HLMACVECVADKGSKALLPEDIAIGQRIDRHCQER-GLLVRPLE-----H 424 (466)
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEEee-ceEEEEEEccCccccCCCCchhHHHHHHHHHHHHC-CcEEeecC-----C
Confidence 333334444444443 33322222333 44455666321100000000000134677777765 99987632 4
Q ss_pred cEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012095 439 CIRISYAA--SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 439 ~iRis~~~--~~e~i~~~~~~l~~~l~~~ 465 (471)
.+|++... ++++|++++++|.++++++
T Consensus 425 ~~~l~Ppl~it~~~id~~~~~l~~al~~~ 453 (466)
T PRK07036 425 LCVLSPPLIITRAQIDEIVAILRAAIEET 453 (466)
T ss_pred EEEEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 67888554 9999999999999998765
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5e-15 Score=151.31 Aligned_cols=362 Identities=11% Similarity=0.075 Sum_probs=211.1
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+.+||+..|. ..++. +|.+.+++.+++.+... +.+.....+....+++.+.+.... ..+.++++++++++.
T Consensus 27 ~dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~~~-~~~~~~~~~~~~~lae~L~~~~p~--~~~~v~f~~sGsEAv 103 (443)
T PRK07483 27 ATGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAY-AHTSFFTTEPAEALADRLVAAAPA--GLEHVYFVSGGSEAV 103 (443)
T ss_pred CCCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHhccC-ccccccCCHHHHHHHHHHHHhCCC--CCCEEEEcCCcHHHH
Confidence 3688899998885 34444 78899999999876321 111112245556677777654331 236899999999999
Q ss_pred HHHHHHhcC-------CC-CeEEEcCCCCCChHHHHHHc-CC------------EEEEecCCCCCCCcC-----------
Q 012095 169 LQAVLAVCS-------PG-DEVIIPAPFWVSYPEMARIA-DA------------TPVILPTRISENFLL----------- 216 (471)
Q Consensus 169 ~~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~-G~------------~~~~v~~~~~~~~~l----------- 216 (471)
..+++.... +| ..|+...-+|++....+... |- .+..++... .|.-
T Consensus 104 e~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 181 (443)
T PRK07483 104 EAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCY--AYREQRAGESDEAYG 181 (443)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCc--cccccccCCCHHHHH
Confidence 988886431 34 46888888888765333222 11 011222110 0110
Q ss_pred --CHHHHHhhhc----cCCcEEEEcCCCC-Ccc-cCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCC
Q 012095 217 --DPKVLESKLT----EKSRLLILCSPSN-PTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 288 (471)
Q Consensus 217 --d~e~l~~~l~----~~~~~i~i~~p~N-PtG-~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 288 (471)
.++.+++.+. ++..+|++...+- -.| ...+++.+++|.++|++| |+++|.||++..+--.|.. .....+.
T Consensus 182 ~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~-gillI~DEV~tGfGRtG~~-~a~~~~g 259 (443)
T PRK07483 182 QRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRY-GVLLILDEVMCGMGRTGTL-FACEEDG 259 (443)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHh-CCEEEEecceeCcccCcHH-HHHhhcC
Confidence 0255666553 2345555543342 235 567888999999999999 9999999999876322211 1111111
Q ss_pred CCCCceEEEecCCcccCccch-hheeeEcCHHHHHHHHHH----HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHH
Q 012095 289 GMWERTLTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNKI----QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (471)
Q Consensus 289 ~~~~~~i~~~S~SK~~g~~G~-R~G~v~~~~~~i~~l~~~----~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~ 363 (471)
-..| +-+++|.++ .|+ .+|.+++++++.+.+..- ....+++.++++.+++.+.|+.-.. ++.+++..+.
T Consensus 260 v~PD----iv~~gK~l~-gG~~Pi~av~~~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~-~~l~~~~~~~ 333 (443)
T PRK07483 260 VAPD----LVTIAKGLG-AGYQPIGAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAE-DGLLANVRAR 333 (443)
T ss_pred CCCC----eeeehhhhc-cCccccEEEEEcHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHh-cCHHHHHHHH
Confidence 1112 445789998 886 999999999998887531 2335677899999999888874111 1222222222
Q ss_pred HHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC-C-CC-CCcE
Q 012095 364 FRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA-F-GD-DTCI 440 (471)
Q Consensus 364 ~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~-f-~~-~~~i 440 (471)
=+..++.|.+.+.+.+.+.-+... |.++-+.+.+.................+.+.++++ ||++.+... . +. .+.+
T Consensus 334 g~~l~~~L~~l~~~~~~i~~vRG~-Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gll~~~~~~~~~~~~~~~l 411 (443)
T PRK07483 334 GEQLRARLRERLGQHPHVGDIRGR-GLFVGVELVADRATKAPFDPALKLHARIKREAMAR-GLMVYPMGGTIDGVRGDHV 411 (443)
T ss_pred HHHHHHHHHHHHhcCCCeeeEeec-ccEEEEEEeecccccCCCCchhhHHHHHHHHHHHC-CcEEEecCccccCCCCCEE
Confidence 222233333333334322222333 33344454221000000000000134677777776 999877421 1 11 3679
Q ss_pred EEEeec--CHHHHHHHHHHHHHHHHhhCCC
Q 012095 441 RISYAA--SLTTLQAAVERIKKGLLTLRPG 468 (471)
Q Consensus 441 Ris~~~--~~e~i~~~~~~l~~~l~~~~~~ 468 (471)
|+.... +++++++++++|++++.++...
T Consensus 412 ~~~PpL~it~~eid~~~~~l~~~l~~~~~~ 441 (443)
T PRK07483 412 LLAPPFIITAAQIDEIVERLGDAIDAALAA 441 (443)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 997764 9999999999999999876543
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.2e-15 Score=150.48 Aligned_cols=349 Identities=11% Similarity=0.054 Sum_probs=211.2
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.+||+..|. ..++. ++.+.+++.+++.+..... ...-..+.+..+++.+.+... -..+.++++++++++..
T Consensus 45 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~-~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~sGsEAve 121 (466)
T PRK07030 45 EGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVI-LAGFSHEPVIELSERLVKITP--PGLSRCFYADNGSSAIE 121 (466)
T ss_pred CCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHHhcCCcc-ccccCCHHHHHHHHHHHHhCC--CCcCEEEEeCCcHHHHH
Confidence 678899998886 33443 6889999999987632211 111234566667777765432 12368999999999999
Q ss_pred HHHHHhc-------CCC-CeEEEcCCCCCChHHHHHHcCCE-------------EEEecCCCCC--CCcC--------CH
Q 012095 170 QAVLAVC-------SPG-DEVIIPAPFWVSYPEMARIADAT-------------PVILPTRISE--NFLL--------DP 218 (471)
Q Consensus 170 ~~~~~l~-------~~g-d~Vlv~~p~y~~~~~~~~~~G~~-------------~~~v~~~~~~--~~~l--------d~ 218 (471)
.+++... .+| ..|+....+|++....+...+.. +..+|..... .++. ++
T Consensus 122 ~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l 201 (466)
T PRK07030 122 VALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMF 201 (466)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHH
Confidence 8888752 133 56888888888865443322211 2223221100 0011 24
Q ss_pred HHHHhhhc---cCCcEEEEcC-CCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCc-cccccCCCCCC
Q 012095 219 KVLESKLT---EKSRLLILCS-PSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWE 292 (471)
Q Consensus 219 e~l~~~l~---~~~~~i~i~~-p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~~~~~ 292 (471)
+.+++.+. ++..+|++.- .+.-.|. ..+++.+++|.++|++| ++++|.||++..+-..|... .....+.+ |
T Consensus 202 ~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~-g~llI~DEV~TGfGRtG~~~a~~~~gv~P--D 278 (466)
T PRK07030 202 AHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRY-GVHLIHDEIAVGFGRTGTMFACEQAGIRP--D 278 (466)
T ss_pred HHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHc-CCEEEEeehhhCcCccccchHHHhcCCCC--C
Confidence 56677664 2344555543 2444564 67888999999999999 99999999998763333211 11112221 2
Q ss_pred ceEEEecCCcccCccc-hhheeeEcCHHHHHHHHH-------HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHH
Q 012095 293 RTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK-------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364 (471)
Q Consensus 293 ~~i~~~S~SK~~g~~G-~R~G~v~~~~~~i~~l~~-------~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~ 364 (471)
+-+|+|.++ .| +.+|.+++++++.+.+.. .....+++.++++.+++.+.|+.-. + +++.++.
T Consensus 279 ----iv~~gKgl~-gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~---~--~~l~~~~ 348 (466)
T PRK07030 279 ----FLCLSKALT-GGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFE---Q--DNVIENN 348 (466)
T ss_pred ----EEeeehhcc-CCcccceEEEecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHH---h--cCHHHHH
Confidence 444689998 89 499999999999987742 1234566789999999998887421 1 1233333
Q ss_pred HHHHHHHHHHhcC---CCCCeeeCCCcceEEeEecCCccCCcccCCCC-CCCHHHHHHHHHHcCCEEEECCCCCCCCCcE
Q 012095 365 RERRDFLVKSFGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK-IENSESLCRYLLDKAQVALVPGDAFGDDTCI 440 (471)
Q Consensus 365 ~~~r~~l~~~L~~---~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~i 440 (471)
++.-+++.+.|++ .+.+.-+... |.++-+.+..... ....+.. ......+.+.++++ ||++.+.. +.+
T Consensus 349 ~~~G~~l~~~L~~l~~~~~v~~vrG~-Gl~~gie~~~~~~-~~~~~~~~~~~~~~i~~~~~~~-Gvl~~~~g-----~~i 420 (466)
T PRK07030 349 RALARRMAEATAHLADHPHVAEVRQT-GMILAIEMVQDKA-SKTPYPWQERRGLKVYQHALER-GALLRPLG-----SVV 420 (466)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEeEec-eeEEEEEeccCcc-ccccCcchhHHHHHHHHHHHHC-CeEEEecC-----CEE
Confidence 3444444444433 3333223333 4445555532100 0000000 00124677777775 99987731 468
Q ss_pred EEEee--cCHHHHHHHHHHHHHHHHhh
Q 012095 441 RISYA--ASLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 441 Ris~~--~~~e~i~~~~~~l~~~l~~~ 465 (471)
|+... .++++|++++++|.++++++
T Consensus 421 ~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 421 YFLPPYVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred EEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 88655 49999999999999999886
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.5e-15 Score=150.01 Aligned_cols=351 Identities=12% Similarity=0.093 Sum_probs=210.7
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+.+||+..|. ..++. +|.+.+++.+++.+..+.. ...-..+....+++.+.+..+. ..+.++++++++++.
T Consensus 53 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~-~~~~~~~~~~~lae~L~~~~p~--~~~~v~f~~SGseAv 129 (460)
T PRK06916 53 VNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAHST-LLGLANVPSILLAEKLIEVVPE--GLKKVFYSDSGATAV 129 (460)
T ss_pred CCCCEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhCCCcc-ccccCCHHHHHHHHHHHHhCCC--CCCEEEEeCCcHHHH
Confidence 3688899998875 33444 7889999999987622111 1111234556677776655431 236899999999999
Q ss_pred HHHHHHhc-------CCC-CeEEEcCCCCCChHHHHHHcCC-------------EEEEecCCCCC--CCc--------CC
Q 012095 169 LQAVLAVC-------SPG-DEVIIPAPFWVSYPEMARIADA-------------TPVILPTRISE--NFL--------LD 217 (471)
Q Consensus 169 ~~~~~~l~-------~~g-d~Vlv~~p~y~~~~~~~~~~G~-------------~~~~v~~~~~~--~~~--------ld 217 (471)
..+++... .+| ..|+..+.+|++....+...+. .+..+|..... .+. -+
T Consensus 130 e~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~ 209 (460)
T PRK06916 130 EIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKH 209 (460)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHH
Confidence 99888653 244 6788888888886543332211 12223221100 011 13
Q ss_pred HHHHHhhhc---cCCcEEEEcC-CCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCC
Q 012095 218 PKVLESKLT---EKSRLLILCS-PSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292 (471)
Q Consensus 218 ~e~l~~~l~---~~~~~i~i~~-p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 292 (471)
++.+++.+. ++..+|++.- .+.-.|. +.+++.+++|.++|++| ++++|.||++..+--.|.. ..+....-..|
T Consensus 210 ~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~-g~llI~DEV~TG~GRtG~~-~a~~~~gv~PD 287 (460)
T PRK06916 210 LEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKY-NVLFITDEVATGFGRTGKM-FACEHENVTPD 287 (460)
T ss_pred HHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHc-CCEEEeechhhCCCcCchh-hHHHhcCCCCC
Confidence 556667664 3445555544 3555665 56999999999999999 9999999999876322221 11111111112
Q ss_pred ceEEEecCCcccCccc-hhheeeEcCHHHHHHHHH-------HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHH
Q 012095 293 RTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK-------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364 (471)
Q Consensus 293 ~~i~~~S~SK~~g~~G-~R~G~v~~~~~~i~~l~~-------~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~ 364 (471)
+-+++|.++ .| +.+|.+++++++.+.+.. .....+++.++++..++.+.|+.- ++ +.+.+..
T Consensus 288 ----iv~~gK~l~-gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l---~~--~~l~~~~ 357 (460)
T PRK06916 288 ----IMTAGKGLT-GGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELY---EK--TNLIEQV 357 (460)
T ss_pred ----eeeeehhhh-cCccccceeeecHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHH---Hh--ccHHHHH
Confidence 335799998 88 599999999999887642 123346667999988888888641 11 1233444
Q ss_pred HHHHHHHHHHhcC---CCCCeeeCCCcceEEeEecCCccCCcccCCCCCC-CHHHHHHHHHHcCCEEEECCCCCCCCCcE
Q 012095 365 RERRDFLVKSFGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE-NSESLCRYLLDKAQVALVPGDAFGDDTCI 440 (471)
Q Consensus 365 ~~~r~~l~~~L~~---~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~Ll~~~gV~v~pg~~f~~~~~i 440 (471)
+++-+++.+.|++ .+.+.-+...|-| +-+.+.+.... .+.+.... ....+...++++ ||++.|.. +.+
T Consensus 358 ~~~g~~l~~~l~~l~~~~~v~~vrG~Glm-~giel~~~~~~-~~~~~~~~~~~~~i~~~~~~~-Gvl~~~~g-----~~l 429 (460)
T PRK06916 358 ARKTEYVATQLEDLFALKHVGDIRQLGLM-VGIELVKNKET-KEPFEWTERVGVQVCKRSREL-GMLTRPLG-----NTI 429 (460)
T ss_pred HHHHHHHHHHHHHhhcCCCeEEeecCCce-eeEEeeccccc-ccCCCchhhHHHHHHHHHHHC-CeEEEecC-----CEE
Confidence 4444455555544 3323223334433 44444321000 00000000 124677777765 99998742 467
Q ss_pred EEEee--cCHHHHHHHHHHHHHHHHhh
Q 012095 441 RISYA--ASLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 441 Ris~~--~~~e~i~~~~~~l~~~l~~~ 465 (471)
|+... .++++|++++++|+++++++
T Consensus 430 ~~~Ppl~it~~~id~~~~~l~~~l~~~ 456 (460)
T PRK06916 430 VFMPPLASTIDELDEMLRILYKAISDV 456 (460)
T ss_pred EEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 88754 49999999999999999764
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.4e-15 Score=150.06 Aligned_cols=337 Identities=14% Similarity=0.097 Sum_probs=206.0
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+++||+..|. ..++. ++.+.+++.+++.+..... ...-..+....+++.+.+..+. .-+.++++++++++..
T Consensus 43 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~-~~~~~~~~~~~la~~l~~~~~~--~~~~v~f~~sGseA~e 119 (427)
T TIGR00508 43 DGRRLIDGMSSWWAAIHGYNHPRLNAAAQKQIDKMSHVM-FGGFTHKPAIELCQKLVKMTPN--ALDCVFLADSGSVAVE 119 (427)
T ss_pred CCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCcc-ccccCCHHHHHHHHHHHhhCCC--CCCEEEEeCCcHHHHH
Confidence 578899998876 33333 6889999999887532111 1000123334455555544332 2369999999999999
Q ss_pred HHHHHhcC-------CC-CeEEEcCCCCCChHHHHHH-cCCE-------------EEEecCCCCCCCc-----CCHHHHH
Q 012095 170 QAVLAVCS-------PG-DEVIIPAPFWVSYPEMARI-ADAT-------------PVILPTRISENFL-----LDPKVLE 222 (471)
Q Consensus 170 ~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~-~G~~-------------~~~v~~~~~~~~~-----ld~e~l~ 222 (471)
.+++.... +| ..|+....+|++....+.. .|.. ...++.. ...+. -|+++++
T Consensus 120 ~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~l~ 198 (427)
T TIGR00508 120 VALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAP-QNRFDEEWNEEAITPLA 198 (427)
T ss_pred HHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCC-CccccchhHHHHHHHHH
Confidence 88886431 33 5788888888876533322 1211 1112211 01111 1456777
Q ss_pred hhhcc---CCcEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCc-cccccCCCCCCceEE
Q 012095 223 SKLTE---KSRLLILCSP-SNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWERTLT 296 (471)
Q Consensus 223 ~~l~~---~~~~i~i~~p-~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~~~~~~~i~ 296 (471)
+.+.. +..+|++... ++-.|. ..+.+.+++|.++|++| ++++|+||++.++...|... .....+. .| |+
T Consensus 199 ~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~-~~llI~DEv~tG~Gr~G~~~~~~~~~v~--pD--i~ 273 (427)
T TIGR00508 199 KLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQY-DILLIADEIATGFGRTGKLFACEHAGVV--PD--IL 273 (427)
T ss_pred HHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCCccchhhhcCCC--CC--EE
Confidence 77642 3444544432 554554 56889999999999999 99999999997653333221 1112222 12 33
Q ss_pred EecCCcccCccch-hheeeEcCHHHHHHHHHHH-----hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Q 012095 297 VNGFSKAFAMTGW-RLGYIAGPKHFVAACNKIQ-----SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 370 (471)
Q Consensus 297 ~~S~SK~~g~~G~-R~G~v~~~~~~i~~l~~~~-----~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~ 370 (471)
+++|.++ .|+ .++.+++++++++.+.... ...++..++++..++.++|+.-. .++ ..++.+++-++
T Consensus 274 --~~gK~l~-gG~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~-~~~----~~~~~~~~~~~ 345 (427)
T TIGR00508 274 --CVGKALT-GGYMTLSATVTTDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILL-EGE----WQKQVSAIENQ 345 (427)
T ss_pred --Eechhhh-cCcccceEEEEcHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHH-hCC----HHHHHHHHHHH
Confidence 3899996 785 6888889999988876421 22344568889888888887411 112 33455555555
Q ss_pred HHHHhcCC---CCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--
Q 012095 371 LVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA-- 445 (471)
Q Consensus 371 l~~~L~~~---~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~-- 445 (471)
+.+.|+++ +++.-.... |.++.+.+.+. .....+.++|+++ ||.+.+.. +.+|++..
T Consensus 346 l~~~L~~l~~~~~i~~vrg~-G~~~~i~~~~~-----------~~~~~~~~~l~~~-Gv~~~~~~-----~~l~~~ppl~ 407 (427)
T TIGR00508 346 LKRELSPLRKNPVVKDVRVL-GAIGVVEMYKP-----------VNVEELQKKFVEQ-GVWIRPFG-----KLIYVMPPYI 407 (427)
T ss_pred HHHHHHHhhcCCCEEeEecc-ccEEEEEECCc-----------cCHHHHHHHHHHC-CeEEEecC-----CEEEEECCCC
Confidence 66666554 222211122 33355555422 1456788888876 99997642 36899877
Q ss_pred cCHHHHHHHHHHHHHHHHh
Q 012095 446 ASLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 446 ~~~e~i~~~~~~l~~~l~~ 464 (471)
.++++|++++++|++++++
T Consensus 408 ~t~~~id~~~~~l~~~l~~ 426 (427)
T TIGR00508 408 ITTEQLQKLTAALIEALHE 426 (427)
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 5999999999999999864
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-14 Score=148.66 Aligned_cols=356 Identities=13% Similarity=0.060 Sum_probs=210.7
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCC---CCCCcEEEeCChH
Q 012095 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLS---YTPDQILVSNGAK 165 (471)
Q Consensus 92 ~~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~---~~~~~i~it~G~~ 165 (471)
..|+.+||+..|. ..++. ++.+.+++.+++.+-.... ...-..+.+..+++.+.+..... -..+.++++++++
T Consensus 61 ~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~~~~-~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGS 139 (472)
T PRK08742 61 HDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVM-LAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGS 139 (472)
T ss_pred CCCCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhCCCcc-ccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCch
Confidence 3688899998885 33443 6889999998876421111 11112355667777776544311 0235899999999
Q ss_pred HHHHHHHHHhcC-------CC-CeEEEcCCCCCChHHHHHHcCCE-------------EEEecCCCCC--CCcC------
Q 012095 166 QSILQAVLAVCS-------PG-DEVIIPAPFWVSYPEMARIADAT-------------PVILPTRISE--NFLL------ 216 (471)
Q Consensus 166 ~al~~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~G~~-------------~~~v~~~~~~--~~~l------ 216 (471)
++...+++.... +| ..|+....+|++....+...+.. +..+|..... .++.
T Consensus 140 EAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~ 219 (472)
T PRK08742 140 AGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYA 219 (472)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHH
Confidence 999988887521 33 67888898898876443332211 1222321100 0011
Q ss_pred --CHHHHHhhhc---cCCcEEEEcC-CCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCC
Q 012095 217 --DPKVLESKLT---EKSRLLILCS-PSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289 (471)
Q Consensus 217 --d~e~l~~~l~---~~~~~i~i~~-p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 289 (471)
+++.+++.+. ++..+|++.. .++-.|. ..+++.++++.++|++| |+++|.||++..|-..|... ......-
T Consensus 220 ~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~-gillI~DEV~TGfGRtG~~~-a~e~~gv 297 (472)
T PRK08742 220 LQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAH-GAFLIADEIATGFGRTGTLF-ACEQAGV 297 (472)
T ss_pred HHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCCCccch-HHHhcCC
Confidence 2566666664 2344555543 2555675 67889999999999999 99999999998874333211 1111111
Q ss_pred CCCceEEEecCCcccCccch-hheeeEcCHHHHHHHHH------HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHH
Q 012095 290 MWERTLTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNK------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 362 (471)
Q Consensus 290 ~~~~~i~~~S~SK~~g~~G~-R~G~v~~~~~~i~~l~~------~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~ 362 (471)
..| +-+++|.++ .|+ .+|.+++++++.+.+.. .....+++.++++.+++.+.|+.-.. ++.+++..+
T Consensus 298 ~PD----iv~~gKgl~-gG~~Plaav~~~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~-~~l~~~~~~ 371 (472)
T PRK08742 298 MPD----LLCLSKGLT-GGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFAD-DDVIARNQP 371 (472)
T ss_pred CCC----EEEEccccc-CCCCCcceeeccHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHH-CCHHHHHHH
Confidence 111 444789998 884 99999999999887642 12335677899999998888874110 111222222
Q ss_pred HHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCC-CCHHHHHHHHHHcCCEEEECCCCCCCCCcEE
Q 012095 363 AFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI-ENSESLCRYLLDKAQVALVPGDAFGDDTCIR 441 (471)
Q Consensus 363 ~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iR 441 (471)
. .++...+.+.+.+.+.+.-+... |+++-+.+....... ..+... .-...+.+.++++ ||++.+. + +.||
T Consensus 372 ~-g~~l~~~~~~~~~~~~i~dvRG~-Gl~~giel~~~~~~~-~~~~~~~~~~~~~~~~~~~~-Gll~~~~---g--~vi~ 442 (472)
T PRK08742 372 T-AARMTQLAAQIGEHPHVADVRQA-GMVVAFELTRGGNKR-TPFPPAARVGLHAYRAALAR-GVVLRPL---G--DVLY 442 (472)
T ss_pred H-HHHHHHHHHHHhcCCCeeeEecc-ceEEEEEeccCcccc-ccCCchhHHHHHHHHHHHHC-CeEEEec---C--CEEE
Confidence 1 11111233334444333223333 444555553210000 000000 0124567777765 9999773 2 5799
Q ss_pred EEeec--CHHHHHHHHHHHHHHHHhh
Q 012095 442 ISYAA--SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 442 is~~~--~~e~i~~~~~~l~~~l~~~ 465 (471)
|.... ++++|++++++|+++++++
T Consensus 443 ~~PpL~it~~ei~~~~~~l~~~l~~~ 468 (472)
T PRK08742 443 WMPPYCVDEAQLALLADTTRHAIDEA 468 (472)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 98775 9999999999999999875
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-14 Score=132.89 Aligned_cols=321 Identities=16% Similarity=0.164 Sum_probs=222.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcC-CCCCC-h
Q 012095 115 EAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA-PFWVS-Y 192 (471)
Q Consensus 115 ~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~-p~y~~-~ 192 (471)
.++.++......+|.. +-..++.+.+.+-++..|.. .++.-.++...++.+++.++-.++.|||.|++.. ..|.. +
T Consensus 30 ~~V~~A~~~~~lgh~s-Pe~~qIm~~v~egikyVFkT-~n~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra 107 (385)
T KOG2862|consen 30 GRVQEAMSRPSLGHMS-PEFVQIMDEVLEGIKYVFKT-ANAQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRA 107 (385)
T ss_pred HHHHHhhcCCccccCC-HHHHHHHHHHHHHHHHHhcc-CCCceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHH
Confidence 3344444444556633 23445555555555444442 1334556666688899999999999999988755 44432 3
Q ss_pred HHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc-cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCC
Q 012095 193 PEMARIADATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 271 (471)
Q Consensus 193 ~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~-~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y 271 (471)
.++++.+|+++..|+.+. +....++.+.+++. .+++++++++...-||+..+. +..+-++|++| ++++++|.+-
T Consensus 108 ~D~~~r~ga~V~~v~~~~--G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~--~~~~g~lc~k~-~~lllVD~Va 182 (385)
T KOG2862|consen 108 ADCARRYGAEVDVVEADI--GQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDL--LAISGELCHKH-EALLLVDTVA 182 (385)
T ss_pred HHHHHhhCceeeEEecCc--ccCccHHHHHHHHHhcCCceEEEEecCccccccchH--HHHHHHHhhcC-CeEEEEechh
Confidence 478899999999998764 44589999999985 578999999999999998882 34456788999 8999999887
Q ss_pred CccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHh----------------------
Q 012095 272 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS---------------------- 329 (471)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~---------------------- 329 (471)
+-. + .. +.++. ++-.+....--|++|.|- .++-+..++...++++..+.
T Consensus 183 Slg---g---t~-F~mDe-wgVDvaytgSQKaL~aP~-GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~ 253 (385)
T KOG2862|consen 183 SLG---G---TE-FEMDE-WGVDVAYTGSQKALGAPA-GLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEP 253 (385)
T ss_pred hcC---C---cc-ceehh-hcccEEEecchhhcCCCC-CcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcc
Confidence 641 1 12 23443 454555555569997542 35557788888877754332
Q ss_pred -cccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC----CCcceEEeEecCCccCCcc
Q 012095 330 -QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE----PQGAFYLFIDFSTYYGSEA 404 (471)
Q Consensus 330 -~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~----p~~g~~~~~~~~~~~~~~~ 404 (471)
.+..+++....+...++|..- .++.+++..++.++..+++...|+++ |++... +.-.-...+.+|..
T Consensus 254 ~~yhhT~pv~lly~Lr~AL~~I--~eeGL~~~~~rH~e~s~~l~~~l~~~-GLq~fv~~e~~rlptvttv~vp~g----- 325 (385)
T KOG2862|consen 254 RAYHHTPPVQLLYSLRAALALI--AEEGLENSWRRHREMSKWLKLSLEAL-GLQLFVVDEELRLPTVTTVKVPYG----- 325 (385)
T ss_pred cccccCCcHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHh-CccceecChhhccCcceeeecCCC-----
Confidence 122346666667777777642 36778999999999999999999998 765431 11122235667654
Q ss_pred cCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec---CHHHHHHHHHHHHHHHHhh
Q 012095 405 EGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 405 ~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~---~~e~i~~~~~~l~~~l~~~ 465 (471)
.|-.+++.++..+++|.+.-|-....+..+||.+-. +.+.++..++.|+.++.+.
T Consensus 326 ------vDw~dVv~~~~~~~~vei~gglg~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~~ 383 (385)
T KOG2862|consen 326 ------VDWKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQRK 383 (385)
T ss_pred ------CCHHHHHHHHHHhcCEEeccccCCCcccEEEEEEeeccCCcHHHHHHHHHHHHHHhhc
Confidence 388899999999888877766655567899998654 6789999999999888654
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.6e-15 Score=145.65 Aligned_cols=306 Identities=14% Similarity=0.088 Sum_probs=204.9
Q ss_pred HHHHHHHHHHcCC----CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcE--EEeCChHHHHHHHHHHhc--CCCCeEEE
Q 012095 113 IAEAGINAIREGF----TRYTPNAGTLELRSAICHKLKEENGLSYTPDQI--LVSNGAKQSILQAVLAVC--SPGDEVII 184 (471)
Q Consensus 113 v~~a~~~~~~~~~----~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i--~it~G~~~al~~~~~~l~--~~gd~Vlv 184 (471)
+.+++.+.+.+.. ..+.......++.+.+.+++.+.+|. +++++ ++|+|+|+++..++.+.. .++..|++
T Consensus 39 ~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~--~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~ 116 (374)
T PLN03032 39 ELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEL--EKDEYWGYITTCGTEGNLHGILVGREVFPDGILYA 116 (374)
T ss_pred HHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCC--CCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEe
Confidence 4566655544321 11211234578888888999888884 55666 999999999988777643 24568999
Q ss_pred cCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc---CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC
Q 012095 185 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 261 (471)
Q Consensus 185 ~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~---~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~ 261 (471)
+.-.|.+....++..|.+++.||++. ++.+|+++|++++++ +|.+++++..+|+||.+-| +++|+++|+++
T Consensus 117 s~~~H~Sv~kaa~~lg~~~~~V~~d~--~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idp---i~eI~~i~~~~- 190 (374)
T PLN03032 117 SRESHYSVFKAARMYRMEAVKVPTLP--SGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDD---LDRILRILKEL- 190 (374)
T ss_pred CCCceeHHHHHHHHcCCCCeEeeeCC--CCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCC---HHHHHHHHHHh-
Confidence 99999999999999999999999864 456999999999976 4667778889999999999 88999999998
Q ss_pred C-----eEEEEccCCCcccc--CCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcc---
Q 012095 262 R-----LLVLSDEIYEHIIY--APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF--- 331 (471)
Q Consensus 262 ~-----~~ii~De~y~~~~~--~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~--- 331 (471)
+ +|+.+|.+|+.+.. ... .+ ...+. ..-..+.-|.+|.++ ....+|.++..++.++.+.....+.
T Consensus 191 g~~~~~~~lHvDaA~gg~~~p~~~~-~~-~~~~~--~~vDSis~s~HK~~g-~P~g~G~ll~r~~~~~~~~~~~~Yl~~~ 265 (374)
T PLN03032 191 GYTEDRFYIHCDGALFGLMMPFVSR-AP-EVTFR--KPIGSVSVSGHKFLG-CPMPCGVALTRKKHVKALSQNVEYLNSR 265 (374)
T ss_pred CCCCCCeeEEEEccchhhhhhccCC-Cc-ccCCC--cCCcEEEECcccccC-CCcCeEEEEEEchhhHhhccCCcccCCC
Confidence 6 59999999976432 111 00 11111 123356778899987 3456899998877766543211111
Q ss_pred --cCCC--ChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCee-eCCCcceEEeEecCCccCCcccC
Q 012095 332 --TSGA--SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-SEPQGAFYLFIDFSTYYGSEAEG 406 (471)
Q Consensus 332 --~~~~--~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~-~~p~~g~~~~~~~~~~~~~~~~~ 406 (471)
+... +......+...|.. ...+.+.++.++.-++.+++.+.|++. |+++ ..|.... +.++.|.
T Consensus 266 d~ti~gSR~g~~~l~~w~~l~~--~G~~g~~~~~~~~~~~a~~l~~~l~~~-~~~~~~~p~~~~-V~f~~~~-------- 333 (374)
T PLN03032 266 DATIMGSRNGHAPLYLWYTLRR--KGYRGIKRDVQHCMRNAHYLKDRLTEA-GLTCRLNELSST-VVFERPM-------- 333 (374)
T ss_pred CCcccCCCchHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEECCCceE-EEEcCCC--------
Confidence 1111 22333334444442 135778888888889999999999887 6654 5566554 4434331
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHH
Q 012095 407 FGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKK 460 (471)
Q Consensus 407 ~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~ 460 (471)
... +.++..+... .+++|+.+.. +.+.++++++.|++
T Consensus 334 ------~~~----~~~~w~l~~~-------~~~~hi~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 334 ------DEA----FIKKWQLACE-------GDIAHVVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred ------cHh----Hhheeeeccc-------CCEEEEEECCCCCHHHHHHHHHHHhc
Confidence 111 2233223321 2478888876 77888888887764
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.7e-15 Score=150.94 Aligned_cols=343 Identities=13% Similarity=0.077 Sum_probs=219.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC-----CcEEEeCChHHHHHHHHHHhcC-----C--
Q 012095 111 VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP-----DQILVSNGAKQSILQAVLAVCS-----P-- 178 (471)
Q Consensus 111 ~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~-----~~i~it~G~~~al~~~~~~l~~-----~-- 178 (471)
..+.+.+..++......|...++..++.+.+.+++.+.+|.+-.. ..-++|+|++++...++.+..+ .
T Consensus 97 ~~lad~l~~~~n~~~~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~ 176 (490)
T PLN02880 97 GFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGK 176 (490)
T ss_pred HHHHHHHHHhhccCCcccccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcc
Confidence 345555555554444455556678999999999999999965211 2367889988887666554321 1
Q ss_pred ---CC-eEEEcCCCCCChHHHHHHcCCE---EEEecCCCCCCCcCCHHHHHhhhccC------CcEEEEcCCCCCcccCC
Q 012095 179 ---GD-EVIIPAPFWVSYPEMARIADAT---PVILPTRISENFLLDPKVLESKLTEK------SRLLILCSPSNPTGSVY 245 (471)
Q Consensus 179 ---gd-~Vlv~~p~y~~~~~~~~~~G~~---~~~v~~~~~~~~~ld~e~l~~~l~~~------~~~i~i~~p~NPtG~~~ 245 (471)
.. .|++++-+|.+...+++.+|.. ++.||++.++++.+|++.|++++.+. +-+|+-+..+-.||.+-
T Consensus 177 ~~~~~~vv~~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiD 256 (490)
T PLN02880 177 NALEKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVD 256 (490)
T ss_pred cccCCeEEEEcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccC
Confidence 12 4567888999999999999984 78899886667889999999998642 34445566778899999
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCH--HHHHH
Q 012095 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK--HFVAA 323 (471)
Q Consensus 246 ~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~--~~i~~ 323 (471)
| +++|+++|++| ++|+.+|.+|+.+......... .+.+...-.-+..+++|.+. ...-+|+++.++ .+++.
T Consensus 257 p---l~eI~~i~~~~-~iwlHVDaA~gg~~~~~~~~~~--~l~gie~aDSit~d~HKwl~-~P~~~g~llvr~~~~l~~~ 329 (490)
T PLN02880 257 P---LLELGKIAKSN-GMWFHVDAAYAGSACICPEYRH--YIDGVEEADSFNMNAHKWFL-TNFDCSLLWVKDRNALIQS 329 (490)
T ss_pred c---HHHHHHHHHHc-CCEEEEehhhHHHHHhCHHHHH--HhcCchhcCEEEECchhhcC-CCccEEEEEEeCHHHHHHH
Confidence 9 99999999999 9999999999976432111000 11211122356778999996 667888888753 22232
Q ss_pred HHHHHhccc--------------C---CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC
Q 012095 324 CNKIQSQFT--------------S---GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (471)
Q Consensus 324 l~~~~~~~~--------------~---~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p 386 (471)
+..-..+.. . +...+....+...|.. ...+.+.+..++.-+.++++.+.+++.+++++..|
T Consensus 330 ~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~--~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~ 407 (490)
T PLN02880 330 LSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRL--YGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTP 407 (490)
T ss_pred HccCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC
Confidence 211110000 0 0111111111112322 13566677777677888999999998889887654
Q ss_pred -CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec---CHHHHHHHHHHHHHHH
Q 012095 387 -QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAAVERIKKGL 462 (471)
Q Consensus 387 -~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~---~~e~i~~~~~~l~~~l 462 (471)
..++ +.++++.... ..+.. ..-..++.++|.+++.+.+.+.. +....++|+++.. ++++++.+++.|.+..
T Consensus 408 ~~~~i-v~Fr~~~~~~-~~~~~--~~~n~~l~~~l~~~g~~~v~~t~-~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~ 482 (490)
T PLN02880 408 RIFSL-VCFRLVPPKN-NEDNG--NKLNHDLLDAVNSSGKIFISHTV-LSGKYVLRFAVGAPLTEERHVTAAWKVLQDEA 482 (490)
T ss_pred CceEE-EEEEEeCCCC-ChhhH--HHHHHHHHHHHHhCCCEEEEEEE-ECCEEEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 5554 5556653100 00000 00124566777766667666533 3345699999886 6799999999999887
Q ss_pred HhhCC
Q 012095 463 LTLRP 467 (471)
Q Consensus 463 ~~~~~ 467 (471)
+++..
T Consensus 483 ~~~~~ 487 (490)
T PLN02880 483 SKLLG 487 (490)
T ss_pred HHHHH
Confidence 77643
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-14 Score=160.66 Aligned_cols=350 Identities=12% Similarity=0.079 Sum_probs=209.2
Q ss_pred cCCCeEEcCCCCCCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHH
Q 012095 93 AGVSVIRLAAGEPDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 171 (471)
Q Consensus 93 ~g~~~i~l~~g~~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~ 171 (471)
.|+.+||+..|...++. ++.+.+++.+++.+..... ....+....+++.+.+.... ..+.+++++++++|...+
T Consensus 622 dG~~ylD~~~g~~~lGH~hp~v~~Ai~~q~~~l~~~~---~~~~~~~~~lAe~L~~~~p~--~~~~v~f~nSGsEA~e~A 696 (1013)
T PRK06148 622 RGRAYLDCFNNVCHVGHAHPRVVAAAARQAARLNTNT---RYLHDAIVAYAERLTATLPD--GLTVAFFVNSGSEANSLA 696 (1013)
T ss_pred CCCEEEEcccChhhcCCCCHHHHHHHHHHHhhcCCcC---CcCCHHHHHHHHHHHHhCCC--CcCEEEEeCCcHHHHHHH
Confidence 57889999888766665 7899999999887632211 11234556666666654431 236899999999999988
Q ss_pred HHHhcC-CC-CeEEEcCCCCCChHHHHHH-cC------------CEEEEecCC--CCCCCcC-C-------HHHHHhhhc
Q 012095 172 VLAVCS-PG-DEVIIPAPFWVSYPEMARI-AD------------ATPVILPTR--ISENFLL-D-------PKVLESKLT 226 (471)
Q Consensus 172 ~~~l~~-~g-d~Vlv~~p~y~~~~~~~~~-~G------------~~~~~v~~~--~~~~~~l-d-------~e~l~~~l~ 226 (471)
++.... .| ..|+..+.+|++....+.. .| ..+..++.. ....|+. + .+.+++.+.
T Consensus 697 lklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~ 776 (1013)
T PRK06148 697 LRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIA 776 (1013)
T ss_pred HHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHH
Confidence 886532 33 5788888888876533221 11 011111111 0001211 1 134444442
Q ss_pred ------cCCcEEEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEec
Q 012095 227 ------EKSRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 299 (471)
Q Consensus 227 ------~~~~~i~i~~p~NPtG-~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S 299 (471)
+++.+|++...+.-.| ...+++.++++.++|++| |+++|.||++.+|.-.|.....+.... -.--+-+
T Consensus 777 ~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~-g~llI~DEVqtGfGRtG~~~~a~e~~g----v~PDivt 851 (1013)
T PRK06148 777 AMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAA-GGVCIADEVQVGFGRVGSHWWAFETQG----VVPDIVT 851 (1013)
T ss_pred hhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHh-CCEEEEEecccCCCCCCCcchhhhhcC----CCcceee
Confidence 2344555543333344 577899999999999999 999999999987633232111111111 1112456
Q ss_pred CCcccCccchhheeeEcCHHHHHHHHHH-HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC-
Q 012095 300 FSKAFAMTGWRLGYIAGPKHFVAACNKI-QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE- 377 (471)
Q Consensus 300 ~SK~~g~~G~R~G~v~~~~~~i~~l~~~-~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~- 377 (471)
++|.+| .|+.+|.+++++++++.+..- ....+++.++++.+++.+.|+.-.. + .+.+..++.-+++.+.|++
T Consensus 852 ~gK~lg-gG~Plgav~~~~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~-e----~l~~~~~~~G~~l~~~L~~l 925 (1013)
T PRK06148 852 MGKPIG-NGHPMGAVVTTREIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIED-E----DLQRNALEIGNYLLAGLREL 925 (1013)
T ss_pred eccccc-CCcceEEEEEcHHHHhhccCCCccccCCCCCHHHHHHHHHHHHHHhh-c----cHHHHHHHHHHHHHHHHHHH
Confidence 799998 899999999999999877532 1235777899999999888874211 1 2233333344444444433
Q ss_pred ---CCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHH
Q 012095 378 ---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQ 452 (471)
Q Consensus 378 ---~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~ 452 (471)
.+-+.-+... |.++-+.+......... .......+.+.|+++ ||++.+.... .+.+||.... ++++++
T Consensus 926 ~~~~~~i~~VrG~-Gl~~gvel~~~~~~~~~---~~~~~~~i~~~~~~~-Gvl~~~~g~~--~~vlr~~Ppl~it~~~id 998 (1013)
T PRK06148 926 QDRFDIIGDVRGM-GLFLGIELVTDRKTKAP---ATAIARYVKNGARER-GILIGTEGPH--DNVLKIRPPLIFSRADAD 998 (1013)
T ss_pred HHhCCCceEEeee-ceEEEEEecCCccccCc---cHHHHHHHHHHHHhC-CeEEeccCCC--CCEEEEeCCccCCHHHHH
Confidence 3222222223 45555555321000000 000134577777765 9999874322 3678887664 999999
Q ss_pred HHHHHHHHHHHhh
Q 012095 453 AAVERIKKGLLTL 465 (471)
Q Consensus 453 ~~~~~l~~~l~~~ 465 (471)
+++++|.+++.++
T Consensus 999 ~~l~~l~~~l~~~ 1011 (1013)
T PRK06148 999 HLLEVLDDVLAAA 1011 (1013)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999764
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-14 Score=147.46 Aligned_cols=362 Identities=14% Similarity=0.083 Sum_probs=204.9
Q ss_pred hcCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcEEEeCChHHH
Q 012095 92 QAGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQS 167 (471)
Q Consensus 92 ~~g~~~i~l~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~-~~i~it~G~~~a 167 (471)
..|+.+||+..|.. .++. +|.+.+++.+++.++...++ ..-..+.+..+++.+.+..+..... ..++++++++++
T Consensus 55 ~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~~~~~-~~~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEA 133 (459)
T PRK06931 55 VEGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPLHT-LDLTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADA 133 (459)
T ss_pred CCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhhccccc-cccCCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHH
Confidence 36888999998863 3444 68899999998875332221 1123466667777776554311111 234666889999
Q ss_pred HHHHHHHhc--CCCCeEEEcCCCCCChHHHHHHcCC-------------EEEEecCCCCC--CCc----CCHHHH----H
Q 012095 168 ILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADA-------------TPVILPTRISE--NFL----LDPKVL----E 222 (471)
Q Consensus 168 l~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~G~-------------~~~~v~~~~~~--~~~----ld~e~l----~ 222 (471)
...+++... ...+.|+....+|++....+..... .+..+|..... .|+ -+.+.+ +
T Consensus 134 ve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (459)
T PRK06931 134 VEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFE 213 (459)
T ss_pred HHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHH
Confidence 998888642 2236788889899887755443211 12223322100 010 022322 2
Q ss_pred hhhc------cCCcEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceE
Q 012095 223 SKLT------EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 295 (471)
Q Consensus 223 ~~l~------~~~~~i~i~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i 295 (471)
+.+. ++..+|++...+.-.|. ..+++.++++.++|++| |+++|.||+...|.-.|. ...+....-..|
T Consensus 214 ~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~-g~LlI~DEV~tGfGRtG~-~~a~~~~gv~PD--- 288 (459)
T PRK06931 214 NFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKH-GILLIVDEVQAGFARTGK-MFAFEHAGIEPD--- 288 (459)
T ss_pred HHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEecchhcCCcCch-HHHhhhcCCCCC---
Confidence 3332 12445555333433454 56889999999999999 999999999988632232 111111111112
Q ss_pred EEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHh
Q 012095 296 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF 375 (471)
Q Consensus 296 ~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L 375 (471)
+-+++|.++ .|+.+|.+++++++ +.+.......+++.++++.+++.+.|+.-.. ++.++...+.=+..++.|.+..
T Consensus 289 -ivt~gK~l~-gG~Pi~av~~~~~~-~~~~~~~~~~T~~gnpla~aaala~L~~l~~-~~l~~~~~~~G~~l~~~L~~l~ 364 (459)
T PRK06931 289 -IIVMSKAVG-GGLPLAVLGIKKEF-DAWQPGGHTGTFRGNQLAMATGLTTLKILKE-ENLAQNAAERGEWLKAQLAELQ 364 (459)
T ss_pred -EEEeccccc-CCcceeeeeeHHHH-hhccCCCCCCCCCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHH
Confidence 445789998 88999988887664 5543333445777899999999888874111 1222222222222233333322
Q ss_pred cCCCCCeeeCCCcceEEeEecCCccCCc-ccCCCC--CCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHH
Q 012095 376 GELEGVKMSEPQGAFYLFIDFSTYYGSE-AEGFGK--IENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTT 450 (471)
Q Consensus 376 ~~~~g~~~~~p~~g~~~~~~~~~~~~~~-~~~~~~--~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~ 450 (471)
.+.|.+.-+... |.++.+.+.+..... ..+... ..-...+...++++ ||++.++... .+.+|+.... ++++
T Consensus 365 ~~~~~i~~vrG~-Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gvl~~~~~~~--~~~l~~~Ppl~it~~e 440 (459)
T PRK06931 365 KRYPCIGNVRGR-GLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFEN-GLLLERGGRN--GNVVRLLPPLLITQAE 440 (459)
T ss_pred HhCCCeEeEecC-ceEEEEEEccCcccccccccCCccHHHHHHHHHHHHHC-CcEEeecCCC--CCEEEEECCCCcCHHH
Confidence 334322223333 444555553210000 000000 00134566777765 9998775322 3568876664 9999
Q ss_pred HHHHHHHHHHHHHhhCC
Q 012095 451 LQAAVERIKKGLLTLRP 467 (471)
Q Consensus 451 i~~~~~~l~~~l~~~~~ 467 (471)
+++++++|.+++.++..
T Consensus 441 id~~~~~l~~~l~~~~~ 457 (459)
T PRK06931 441 CEEFIDRFEQALLAAVK 457 (459)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999987543
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.4e-15 Score=152.39 Aligned_cols=333 Identities=16% Similarity=0.181 Sum_probs=192.2
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|..+||+..|. ..++. ++.+.+|+.+++.+.. .|+. ....+-.+++.+.+... ..+.+.++++++++.
T Consensus 45 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~-~~~~---~~~~~~~la~~l~~~~p---~~~~v~f~~sGseA~ 117 (431)
T PRK06209 45 VDGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQDGC-NFTR---PSAIELDAAESFLELID---GADMVKFCKNGSDAT 117 (431)
T ss_pred CCCCEEEEccccccchhcCCCCHHHHHHHHHHHHhCc-CCCC---CCHHHHHHHHHHHHhCC---ccceEEEecCHHHHH
Confidence 3688899998876 33444 7899999999988643 2321 12333345555554332 236899999999999
Q ss_pred HHHHHHhc-CCC-CeEEEc-CCCCCChHHHHH-----HcCC------EEEEecCCCCCCCcCCHHHHHhhhcc---CCcE
Q 012095 169 LQAVLAVC-SPG-DEVIIP-APFWVSYPEMAR-----IADA------TPVILPTRISENFLLDPKVLESKLTE---KSRL 231 (471)
Q Consensus 169 ~~~~~~l~-~~g-d~Vlv~-~p~y~~~~~~~~-----~~G~------~~~~v~~~~~~~~~ld~e~l~~~l~~---~~~~ 231 (471)
..+++... -.| ..|+.. .-+|.++..... ..|. .+..++ + -|++++++++.. +..+
T Consensus 118 e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~-~d~~~l~~~l~~~~~~~aa 190 (431)
T PRK06209 118 SAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFR------Y-NDIASLEALFEDHPGRIAC 190 (431)
T ss_pred HHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhccccccC------C-CCHHHHHHHHHhCCCCEEE
Confidence 99888642 134 345543 233332111100 0010 011111 1 278999988853 2334
Q ss_pred EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhh
Q 012095 232 LILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRL 311 (471)
Q Consensus 232 i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~ 311 (471)
|++ .|- .|...+.+.+++|.++|++| ++++|+||++..+...+........+.. -+.+|+|.+| .|+.+
T Consensus 191 vi~-Epv--~g~~~~~~~l~~l~~lc~~~-g~lLI~DEv~tG~~~~~~g~~~~~gv~P------Di~t~gK~lg-gG~p~ 259 (431)
T PRK06209 191 VIL-EPA--TADEPQDGFLHEVRRLCHEN-GALFILDEMITGFRWHMRGAQKLYGIVP------DLSCFGKALG-NGFAV 259 (431)
T ss_pred EEE-ccc--cCCCCCHHHHHHHHHHHHHc-CCEEEEEcccccCCcCcchhhHHhCCCc------ceeeehhhhc-CCccc
Confidence 444 442 34477899999999999999 9999999999766432111111112221 1467899998 78999
Q ss_pred eeeEcCHHHHHH--HHHH------HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCee
Q 012095 312 GYIAGPKHFVAA--CNKI------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 383 (471)
Q Consensus 312 G~v~~~~~~i~~--l~~~------~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~ 383 (471)
|++++++++++. +... ....++++++++.+++.+.|+.-.. +..++++.+.-+..++.+.+...++ ++..
T Consensus 260 ~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~~~~~~-~~~~ 337 (431)
T PRK06209 260 SALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRD-EDVIERLHEQGAKLAAGVNEAAAEH-GLQD 337 (431)
T ss_pred EEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHHHHHHhC-CCCe
Confidence 999999999886 3111 1234556777888888888764211 2223333333333344343333334 3322
Q ss_pred -eCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHH
Q 012095 384 -SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGL 462 (471)
Q Consensus 384 -~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l 462 (471)
....|.+..+.-+... .. +.........+.++|+++ ||++.| ++++..+++++|++++++|.+++
T Consensus 338 ~vr~~G~~~~~~~~~~~--~~--~~~~~~~~~~~~~~l~~~-Gi~~p~---------l~is~~ht~~dId~~l~~l~~~l 403 (431)
T PRK06209 338 HVRVSGRPCCLTYSTLD--GN--GQPSQAFRTLFLQETIRR-GVLMPS---------LVVSYAHGDADIERTIDAVHGAL 403 (431)
T ss_pred EEEeecceEEEEEecCC--cc--cCCcHHHHHHHHHHHHHC-Cccccc---------ccccccCCHHHHHHHHHHHHHHH
Confidence 1222333222222110 00 000000122567777775 887632 57787779999999999999998
Q ss_pred Hhh
Q 012095 463 LTL 465 (471)
Q Consensus 463 ~~~ 465 (471)
+++
T Consensus 404 ~~~ 406 (431)
T PRK06209 404 GVY 406 (431)
T ss_pred HHH
Confidence 875
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.8e-15 Score=146.84 Aligned_cols=313 Identities=12% Similarity=0.049 Sum_probs=192.0
Q ss_pred hHHHHHHHHHHHHc--CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEe-CChHHHHHHHHHHhcCCCCeEEEcC
Q 012095 110 PVLIAEAGINAIRE--GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVS-NGAKQSILQAVLAVCSPGDEVIIPA 186 (471)
Q Consensus 110 p~~v~~a~~~~~~~--~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it-~G~~~al~~~~~~l~~~gd~Vlv~~ 186 (471)
|+.+.+++...... ...++++. ..++-+.+.+.+.+.++.+ +.++|+++ .|+|.+++.++..++.+ +.+++..
T Consensus 15 ~~~v~~a~~~~~~~~~~~~hr~~~--f~~~~~~~r~~l~~l~~~~-~~~~v~f~~gs~T~a~~~~~~~l~~~-~~l~i~~ 90 (361)
T TIGR01366 15 RLEQLQALTTTAASLFGTSHRQAP--VKNLVGRVREGLAELFSLP-DGYEVILGNGGATAFWDAATFGLIEK-KSLHLSF 90 (361)
T ss_pred CHHHHHHHHhcCccccccCcCChH--HHHHHHHHHHHHHHHhCCC-CCceEEEECCchhHHHHHHHHhcccc-cccEEec
Confidence 67777776532100 01233221 2344444444444445532 33578886 45999999999998743 3444445
Q ss_pred CCCCCh-HHHHHHc--CCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCe
Q 012095 187 PFWVSY-PEMARIA--DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL 263 (471)
Q Consensus 187 p~y~~~-~~~~~~~--G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~ 263 (471)
-.|..- .+.+... +.++..++.+. +..++ ..+++++++|.+++-.|.||...| +++| ++++ ++
T Consensus 91 G~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~lV~~~h~et~tG~~~p---i~~I---~~~~-g~ 156 (361)
T TIGR01366 91 GEFSSKFAKAVKLAPWLGEPIIVTADP--GSAPE-----PQADPGVDVIAWAHNETSTGVAVP---VRRP---EGSD-DA 156 (361)
T ss_pred CHHHHHHHHHHHhhhccCCceEEecCC--CCCCC-----CccCCCCCEEEEcccCCccceecc---cccc---cccC-CC
Confidence 555432 2344432 33666666542 21222 235678999999999999999999 5555 4788 99
Q ss_pred EEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHh--------------
Q 012095 264 LVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS-------------- 329 (471)
Q Consensus 264 ~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~-------------- 329 (471)
++++|.+.+. +.....+.. ..+++.|-.|.+|.+|- ++.+++++++++++.....
T Consensus 157 ~~iVDavqs~----g~~~idv~~------~D~~~~s~~K~lg~~~G-l~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~ 225 (361)
T TIGR01366 157 LVVIDATSGA----GGLPVDIAE------TDVYYFAPQKNFASDGG-LWLAIMSPAALERIEAIAASGRWVPEFLSLPTA 225 (361)
T ss_pred eEEEEcCccc----cCCCCCHHH------CCEEEEEchhhcCCCCc-eEEEEECHHHHhhhhcccCCCCCCchhhhHHHH
Confidence 9999999875 222222221 23788999999987752 5556678887766542110
Q ss_pred -------cccCCCChHHHHHHHHHHhccCCChH-HHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC----cceEEeEecC
Q 012095 330 -------QFTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAFYLFIDFS 397 (471)
Q Consensus 330 -------~~~~~~~~~~q~aa~~~L~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~----~g~~~~~~~~ 397 (471)
.+...++.....++.++++.- .+. .++...+++++..+++++.+.++++++..... ......+.++
T Consensus 226 ~~~~~~~~t~~tp~i~~i~~l~~al~~l--~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~ 303 (361)
T TIGR01366 226 VDNSLKNQTYNTPAIATLALLAEQIDWM--NGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFV 303 (361)
T ss_pred HhccccCCCCCCchHHHHHHHHHHHHHH--HHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEECC
Confidence 111223333333555555531 012 26677788899999999999998555543211 1111223333
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012095 398 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~ 465 (471)
+. .+..++.+.|.++ ||.+.+|......+.+|+|+.. +.++++++++.|+++++++
T Consensus 304 ~g-----------~~~~~v~~~L~~~-gI~i~~~~~~l~~~~vRis~~~~~t~~di~~l~~al~~~~~~~ 361 (361)
T TIGR01366 304 DD-----------IDAATVAKILRAN-GIVDTEPYRKLGRNQLRVAMFPAIDPDDVEALTECVDWVVERL 361 (361)
T ss_pred Cc-----------cCHHHHHHHHHHC-CCeeccCccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhhC
Confidence 32 2677888888655 9999876433235689999987 8999999999999988764
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.3e-14 Score=142.46 Aligned_cols=312 Identities=19% Similarity=0.188 Sum_probs=187.8
Q ss_pred ChHHHHHHHHHHHHcCC-CCCCCC---CC--CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeE
Q 012095 109 TPVLIAEAGINAIREGF-TRYTPN---AG--TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEV 182 (471)
Q Consensus 109 ~p~~v~~a~~~~~~~~~-~~Y~~~---~G--~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~V 182 (471)
.|+.+.+++.+.+.... ..|.-. .| ...+++.+++++ | .+..+++++++.++..++.+ +.+||+|
T Consensus 93 l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~----g----ae~alvv~sg~aAi~l~l~~-l~~GdeV 163 (454)
T TIGR00474 93 LAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELT----G----AEDALVVNNNAAAVLLALNT-LAKGKEV 163 (454)
T ss_pred CCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHH-hCCcCEE
Confidence 47889999988776421 122111 11 245556666654 4 23455677777888877754 6899999
Q ss_pred EEcCCCCCC------hHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCc--c--cCCCHHHHHH
Q 012095 183 IIPAPFWVS------YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT--G--SVYPKNLLDE 252 (471)
Q Consensus 183 lv~~p~y~~------~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPt--G--~~~~~~~l~~ 252 (471)
++.+..|.. +...++..|++++.++.+. ..++++++++++++|++|++.+++|++ | ...+ +++
T Consensus 164 Ivs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~----~~~l~dle~aI~~~T~lv~~~h~sN~~~~G~~~~~d---l~~ 236 (454)
T TIGR00474 164 IVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTTN----RTHLKDYEDAITENTALLLKVHTSNYRIVGFTEEVS---IAE 236 (454)
T ss_pred EECCChhhhhcchhhHHHHHHHcCCEEEEeCCCC----CCCHHHHHHhcCcCCEEEEEEccCcccccCCCCCCC---HHH
Confidence 999876432 2346678899999998642 148999999999999999999999985 6 4677 999
Q ss_pred HHHHHHhCCCeEEEEccCCCccc----cCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHH
Q 012095 253 IARIVAKHPRLLVLSDEIYEHII----YAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 328 (471)
Q Consensus 253 i~~l~~~~~~~~ii~De~y~~~~----~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~ 328 (471)
|+++|++| ++++++|...+.+. |+-...+.+... ...+-.+++.|.+|.+|-+ ..|++++++++++++.+..
T Consensus 237 I~~la~~~-g~~vivD~~sG~l~~~~~~gl~~~p~~~~~-~~~GaDiv~fSg~K~LgGp--~~G~i~g~~~~i~~l~~~~ 312 (454)
T TIGR00474 237 LVALGREH-GLPVMEDLGSGSLVDLSRYGLPDEPTVQEV-IAAGVDLVTFSGDKLLGGP--QAGIIVGKKELIERLKKNP 312 (454)
T ss_pred HHHHHHHc-CCeEEEECCCcccccchhccCCCCcccccH-hHcCCCEEEecCccccCCC--eEEEEEECHHHHHhhhhch
Confidence 99999999 99999998644321 100011111121 1134459999999998523 4799999999887765321
Q ss_pred hcccCCCChHHHHHHHHHHhccCC-Ch--------HHHHHHHHHHHHHHHHHHHHhcCC--CCC--eeeCCC----c---
Q 012095 329 SQFTSGASSISQKAGVAALGLGYA-GG--------EVVSKMVKAFRERRDFLVKSFGEL--EGV--KMSEPQ----G--- 388 (471)
Q Consensus 329 ~~~~~~~~~~~q~aa~~~L~~~~~-~~--------~~~~~~~~~~~~~r~~l~~~L~~~--~g~--~~~~p~----~--- 388 (471)
..-..-..-....+..+.+..-.. .. ..+....++..++...+.+.|++. +|+ ++.+.. |
T Consensus 313 l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~ggg~~ 392 (454)
T TIGR00474 313 LTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAALGPGFELEIVPGLSQVGGGSL 392 (454)
T ss_pred hHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhhccCCceEEEEEcCCcccCCCC
Confidence 100011222222222223221000 01 112233445666777788888764 444 333221 1
Q ss_pred ------ceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCC--EEEECCCCCCCCCcEEEEeec-CHHHHHHHHHHH
Q 012095 389 ------AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ--VALVPGDAFGDDTCIRISYAA-SLTTLQAAVERI 458 (471)
Q Consensus 389 ------g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~g--V~v~pg~~f~~~~~iRis~~~-~~e~i~~~~~~l 458 (471)
++-+.++... .+..++.++|. +.. |+.+. .++.+.+.+.+ .+++++..+++|
T Consensus 393 p~~~l~~~~v~~~~~~------------~~~~~l~~~lr-~~~~~ii~r~-----~~~~~~ld~r~~~~~~~~~~~~~~ 453 (454)
T TIGR00474 393 PDERLPSYAVTLTPDG------------LSAEKLEARLR-ELPPPIIGRI-----EDDRFLLDLRTLLEDEEELLIEAL 453 (454)
T ss_pred cCCCCCeEEEEEecCC------------CCHHHHHHHHh-cCCCCEEEEE-----ECCEEEEEeCcCCHHHHHHHHHHh
Confidence 1222332221 15778888765 434 44332 25677788877 778888877765
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.6e-14 Score=145.01 Aligned_cols=343 Identities=11% Similarity=0.092 Sum_probs=196.5
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHH--HHHHHHHcCCCCCC-CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAE--AGINAIREGFTRYT-PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~--a~~~~~~~~~~~Y~-~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~ 166 (471)
.|+.+||+..|. ..++. +|.+.+ ++.+++.+-....+ ...-..+....+++.+.+..+. -..+.+++++++++
T Consensus 43 dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l~~~~~p-~~~~~v~f~~SGsE 121 (443)
T PRK08297 43 TGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTFARVLGD-PELPHLFFVDGGAL 121 (443)
T ss_pred CCCEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHHHhhcCC-CCCCEEEEeCchHH
Confidence 578899998886 33444 678888 88888764211110 1111234445566665544321 13469999999999
Q ss_pred HHHHHHHHhc----------C---CC-CeEEEcCCCCCChHHHHHHc-CCEEE-----------EecCCCC----CCCc-
Q 012095 167 SILQAVLAVC----------S---PG-DEVIIPAPFWVSYPEMARIA-DATPV-----------ILPTRIS----ENFL- 215 (471)
Q Consensus 167 al~~~~~~l~----------~---~g-d~Vlv~~p~y~~~~~~~~~~-G~~~~-----------~v~~~~~----~~~~- 215 (471)
+++.+++... . ++ ..|+....+|++....+... |.... .++.... .+..
T Consensus 122 Ave~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (443)
T PRK08297 122 AVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDL 201 (443)
T ss_pred HHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCCCCCccccc
Confidence 9999988762 1 12 56998999998876544432 21110 0110000 0000
Q ss_pred --------CCHHHHHhhhc---cCCcEEEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccc
Q 012095 216 --------LDPKVLESKLT---EKSRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS 283 (471)
Q Consensus 216 --------ld~e~l~~~l~---~~~~~i~i~~p~NPtG-~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~ 283 (471)
-+++.+++.+. +++.+|++...+.-.| ...+++.+++|.++|++| |+++|.||++.+|...|.. ..
T Consensus 202 ~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~-g~llI~DEV~tGfGRtG~~-~a 279 (443)
T PRK08297 202 EEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEH-DALLIFDEVQTGVGLTGTA-WA 279 (443)
T ss_pred chhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhccCccchH-HH
Confidence 02345556664 3455665543344445 458889999999999999 9999999999876333321 11
Q ss_pred cccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHH-----HHhcccCCCChHHHHHHHHHHhccCCChHHHH
Q 012095 284 FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK-----IQSQFTSGASSISQKAGVAALGLGYAGGEVVS 358 (471)
Q Consensus 284 ~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~-----~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~ 358 (471)
...+.-..| |+ +|+|.++ .| |.+.+ +++.+.+.. .....+++.++++..++.+.|+.-. .++.++
T Consensus 280 ~~~~gv~PD--iv--~~gK~l~-~~---a~l~~-~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~-~~~l~~ 349 (443)
T PRK08297 280 YQQLGVRPD--IV--AFGKKTQ-VC---GIMAG-RRVDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIE-EDGLVE 349 (443)
T ss_pred HHhcCCCCC--EE--Eeccccc-cc---ceecc-hHHHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHHH-hcCHHH
Confidence 111111112 33 5899985 22 44433 333222111 1234566789999998888887411 122233
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCe-eeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCC
Q 012095 359 KMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD 437 (471)
Q Consensus 359 ~~~~~~~~~r~~l~~~L~~~~g~~-~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~ 437 (471)
+..+.-+..++.+.+...+.+.+. ..... |.++.+.+++. .....+++.|+++ ||++.|+. .
T Consensus 350 ~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~-G~~~~i~~~~~-----------~~~~~~~~~l~~~-Gvl~~~~~----~ 412 (443)
T PRK08297 350 NAARQGEYLLARLEELAAEFPAVVSNVRGR-GLMCAFDLPTT-----------ADRDEVIRRLWEE-GVLVLPCG----E 412 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCcceeeecc-ceEEEEEecCH-----------HHHHHHHHHHHHC-CEEEecCC----C
Confidence 333332333333333333344332 33444 44466677532 1345788888865 99998853 2
Q ss_pred CcEEEE--eecCHHHHHHHHHHHHHHHHhh
Q 012095 438 TCIRIS--YAASLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 438 ~~iRis--~~~~~e~i~~~~~~l~~~l~~~ 465 (471)
+.+|++ +..+++++++++++|.++++++
T Consensus 413 ~~lr~~P~l~~t~~eid~~l~~l~~~l~~~ 442 (443)
T PRK08297 413 RSIRFRPALTVTTEEIDAAIDALRRALPEV 442 (443)
T ss_pred CeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 468885 4459999999999999998764
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.2e-15 Score=145.09 Aligned_cols=298 Identities=18% Similarity=0.209 Sum_probs=210.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCC
Q 012095 131 NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI 210 (471)
Q Consensus 131 ~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~ 210 (471)
..|..++.+.+.+.+++..| .++.+++..|-. .....+.+++.||.-|+-++-.+.+....+++.|+.++.+..+
T Consensus 177 e~G~~~~hkelE~l~A~f~g---~e~a~vF~mGf~-TNs~~~p~l~~~gsLIiSDelNHaSi~~GaRLSgAtiRVfkHN- 251 (519)
T KOG1357|consen 177 EAGTTEEHKELEELVARFLG---VEDAIVFSMGFA-TNSMNIPSLLGKGSLIISDELNHASLITGARLSGATTRVFRHN- 251 (519)
T ss_pred hcccHHHHHHHHHHHHHhcC---CcceEEEecccc-ccccCcceeecCCcceeeccccchheeccccccCceEEEEecC-
Confidence 35888889999988888888 568899988832 2444677889999999999999999999999999999988764
Q ss_pred CCCCcCCHHHHHhhhcc-------CC-----cEEEE-cCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccC
Q 012095 211 SENFLLDPKVLESKLTE-------KS-----RLLIL-CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 277 (471)
Q Consensus 211 ~~~~~ld~e~l~~~l~~-------~~-----~~i~i-~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~ 277 (471)
|.+.||+.|++ ++ |.+++ ..-...-|.+.. +.+++++++++ ..+++.||+|+....+
T Consensus 252 ------dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~---Lp~vvalkkky-kayl~lDEAHSiGA~g 321 (519)
T KOG1357|consen 252 ------DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVD---LPEVVALKKKY-KAYLYLDEAHSIGAMG 321 (519)
T ss_pred ------CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecc---cHHHHHhhccc-cEEEEeeccccccccC
Confidence 56666666532 22 23333 444567788887 89999999999 9999999999976553
Q ss_pred C--CCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHh---cccCCCChHHHHHHHHHHh-ccC
Q 012095 278 P--ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS---QFTSGASSISQKAGVAALG-LGY 351 (471)
Q Consensus 278 ~--~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~---~~~~~~~~~~q~aa~~~L~-~~~ 351 (471)
. ..-..++..+. .+..|.+++|.|++|..| ||+.+++++++.++.... ..+..++++.|.......- .+.
T Consensus 322 ~tGrgvce~~g~d~-~dvDImMGtftKSfga~G---Gyiagsk~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~ 397 (519)
T KOG1357|consen 322 ATGRGVCEYFGVDP-EDVDIMMGTFTKSFGAAG---GYIAGSKELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGE 397 (519)
T ss_pred CCCcceeeccCCCc-hhheeecceehhhccccc---ceecCcHHHHhhhccCCCceeecccCChHHHHHHHHHHHhhcCC
Confidence 2 22223333332 466788999999999888 999999999998875322 2233455666655443322 222
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEe--EecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEE
Q 012095 352 AGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF--IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV 429 (471)
Q Consensus 352 ~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~ 429 (471)
...+.-++..+++++++.+++..|.+. |+.+........+. +-.|. ....+.+.|+++ ++.++
T Consensus 398 dgt~~g~~k~~~l~~ns~yfr~~l~~~-gfivyG~~dSpVvplll~~~~-------------k~~~f~r~~l~~-nigvV 462 (519)
T KOG1357|consen 398 DGTNRGRQKIERLAENSRYFRWELQKM-GFIVYGNNDSPVVPLLLYGPA-------------KIVAFSREMLER-NIGVV 462 (519)
T ss_pred CcccHHHHHHHHHHhhhHHHHHhhhcC-cEEEecCCCCCcceeeecCcc-------------cccHHHHHHHhc-CceEE
Confidence 234557778888999999999999887 88777665553322 22222 344677788877 55544
Q ss_pred CCCCCCC---CCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012095 430 PGDAFGD---DTCIRISYAA--SLTTLQAAVERIKKGL 462 (471)
Q Consensus 430 pg~~f~~---~~~iRis~~~--~~e~i~~~~~~l~~~l 462 (471)
-+..... +..+|++.++ +.|+++.+++.+.++-
T Consensus 463 vvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g 500 (519)
T KOG1357|consen 463 VVGFPATPLLESRARFCLSASHTKEDLDRALEVIDRVG 500 (519)
T ss_pred EEeCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhhc
Confidence 4332221 3677887776 8899999999887764
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.3e-14 Score=145.96 Aligned_cols=341 Identities=13% Similarity=0.079 Sum_probs=220.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC-----CCcEEEeCChHHHHHHHHHHhcC--------
Q 012095 111 VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYT-----PDQILVSNGAKQSILQAVLAVCS-------- 177 (471)
Q Consensus 111 ~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~-----~~~i~it~G~~~al~~~~~~l~~-------- 177 (471)
..+-+.+..++......|...++..++.+.+.+|+.+.+|.+-. ...-++++|++++...++.+.-+
T Consensus 145 ~~lgd~l~sa~n~~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~ 224 (539)
T PLN02590 145 GFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGK 224 (539)
T ss_pred HHHHHHHHHhcccccCCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcc
Confidence 44556666666544456666778899999999999999996521 13357788988887766554321
Q ss_pred ---CCCeEEEcCCCCCChHHHHHHcCC---EEEEecCCCCCCCcCCHHHHHhhhccC------CcEEEEcCCCCCcccCC
Q 012095 178 ---PGDEVIIPAPFWVSYPEMARIADA---TPVILPTRISENFLLDPKVLESKLTEK------SRLLILCSPSNPTGSVY 245 (471)
Q Consensus 178 ---~gd~Vlv~~p~y~~~~~~~~~~G~---~~~~v~~~~~~~~~ld~e~l~~~l~~~------~~~i~i~~p~NPtG~~~ 245 (471)
|.=.|++.+.+|.+...+++.+|. +++.||++.++++.+|++.|+++|.+. |-+|+-+..+-.||.+=
T Consensus 225 ~~~~~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiD 304 (539)
T PLN02590 225 TLLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVD 304 (539)
T ss_pred cCCCCEEEEecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccC
Confidence 111455688899999999999998 588999976567899999999999642 33455566677899998
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCc-cccccCCCCCCceEEEecCCcccCccchhheeeEcCH--HHHH
Q 012095 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK--HFVA 322 (471)
Q Consensus 246 ~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~--~~i~ 322 (471)
+ +++|+++|++| ++|+.+|.+|+.+..-.... ..+..+. .-.=+...++|.+. ...-.|.+...+ .+.+
T Consensus 305 p---l~~Ia~i~~~~-g~WlHVDaA~GG~al~~~~~r~~~~Gie---~ADSit~D~HK~l~-~p~~cg~llvr~~~~l~~ 376 (539)
T PLN02590 305 P---LVPLGNIAKKY-GIWLHVDAAYAGNACICPEYRKFIDGIE---NADSFNMNAHKWLF-ANQTCSPLWVKDRYSLID 376 (539)
T ss_pred C---HHHHHHHHHHh-CCeEEEecchhhhhhcChhhHHHhcCCc---cCCEEEECchhhcC-cCcCEEEEEecCHHHHHH
Confidence 8 99999999999 99999999999765321111 1111121 11234556899986 567788777654 3334
Q ss_pred HHHHHHhcc-----------------cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC
Q 012095 323 ACNKIQSQF-----------------TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385 (471)
Q Consensus 323 ~l~~~~~~~-----------------~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~ 385 (471)
.+..-..+. ..+.-.+...-+...|.. +..+.+.++.++.-+..+++.+.+++.+++++..
T Consensus 377 a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~--~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~ 454 (539)
T PLN02590 377 ALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRL--YGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVT 454 (539)
T ss_pred HhhcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec
Confidence 332111000 111122222222233332 1356788888888899999999999988898765
Q ss_pred C-CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec---CHHHHHHHHHHHHHH
Q 012095 386 P-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAAVERIKKG 461 (471)
Q Consensus 386 p-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~---~~e~i~~~~~~l~~~ 461 (471)
+ .-+. +.++........ +. ......++.++|.+...+++.+.. ....-+||++++. ++++++.+++.|.+.
T Consensus 455 ~~~l~i-VcFr~~~~~~~~-~~--~~~ln~~l~~~l~~~G~~~vs~t~-~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~ 529 (539)
T PLN02590 455 TRYFSL-VCFRLAPVDGDE-DQ--CNERNRELLAAVNSTGKIFISHTA-LSGKFVLRFAVGAPLTEEKHVTEAWQIIQKH 529 (539)
T ss_pred CCceEE-EEEEecCCCCCH-HH--HHHHHHHHHHHHHhCCCEEEEeeE-ECCEEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 4 4444 444543210000 00 000134666777666555555533 3334589999986 789999999999998
Q ss_pred HHhhC
Q 012095 462 LLTLR 466 (471)
Q Consensus 462 l~~~~ 466 (471)
..++.
T Consensus 530 a~~~~ 534 (539)
T PLN02590 530 ASKFT 534 (539)
T ss_pred HHHhc
Confidence 77654
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.4e-14 Score=156.01 Aligned_cols=349 Identities=15% Similarity=0.117 Sum_probs=206.4
Q ss_pred cCCCeEEcCCCCCCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHH
Q 012095 93 AGVSVIRLAAGEPDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 171 (471)
Q Consensus 93 ~g~~~i~l~~g~~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~ 171 (471)
.|+.+||+..|...++. ++.+.+++.+++....+. .. ...+....+++.+.+.... ..+.++++++++++...+
T Consensus 583 dG~~ylD~~~~~~~lGh~hp~v~~Ai~~q~~~l~~~--~~-~~~~~~~elae~L~~~~p~--~~~~v~f~~SGsEA~e~A 657 (972)
T PRK06149 583 AGRSYLDMVNNVTVLGHGHPRLAAAAARQWSLLNTN--SR-FHYAAVAEFSERLAALAPD--GLDTVFLVNSGSEANDLA 657 (972)
T ss_pred CCCEEEECCCCccccCCCCHHHHHHHHHHHHhcccc--cc-ccCHHHHHHHHHHHHhCCC--CcCEEEEeCCchHHHHHH
Confidence 57889999988766663 789999999988763322 11 1234556667666654421 236899999999999998
Q ss_pred HHHhc--CCCCeEEEcCCCCCChHHHHHHc-CC-------------EEEEecCCCC--CCCc-CC-----HHHHHhhhc-
Q 012095 172 VLAVC--SPGDEVIIPAPFWVSYPEMARIA-DA-------------TPVILPTRIS--ENFL-LD-----PKVLESKLT- 226 (471)
Q Consensus 172 ~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-G~-------------~~~~v~~~~~--~~~~-ld-----~e~l~~~l~- 226 (471)
++... .....|+..+-+|++....+... +. .+..++.... ..|. .+ .+.+++.+.
T Consensus 658 lklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~ 737 (972)
T PRK06149 658 IRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEE 737 (972)
T ss_pred HHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHH
Confidence 88431 12356777787787654322111 10 0122222110 0121 11 233333332
Q ss_pred -----cCCcEEEEcCC-CCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecC
Q 012095 227 -----EKSRLLILCSP-SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF 300 (471)
Q Consensus 227 -----~~~~~i~i~~p-~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 300 (471)
+++.+|++... ++-.....+++.+++|.++|++| |+++|.||++.++--.|.....+....-..| +-+|
T Consensus 738 ~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~-g~llI~DEV~tGfGRtG~~~~a~e~~gv~PD----ivt~ 812 (972)
T PRK06149 738 LDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRAR-GGVCIADEVQVGYGRLGHYFWGFEQQGVVPD----IITM 812 (972)
T ss_pred HhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHc-CCEEEEEeehhcCCccCccchhhhhcCCCCC----EEEe
Confidence 23344544333 44444678899999999999999 9999999999765322221111111111112 3378
Q ss_pred CcccCccchhheeeEcCHHHHHHHHHHH-hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC--
Q 012095 301 SKAFAMTGWRLGYIAGPKHFVAACNKIQ-SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-- 377 (471)
Q Consensus 301 SK~~g~~G~R~G~v~~~~~~i~~l~~~~-~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-- 377 (471)
+|.+| .|..+|.+++++++++.+.... ...+++.++++.+++.+.|+.-.. + ++.+..++.-+++.+.|++
T Consensus 813 gK~lg-~G~Pl~av~~~~~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~~-e----~l~~~~~~~G~~l~~~L~~l~ 886 (972)
T PRK06149 813 AKGMG-NGHPLGAVITRREIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLRE-E----KLQENARRVGDHLKARLEALA 886 (972)
T ss_pred ccccc-CCeeeEEEEEcHHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHHh-c----CHHHHHHHHHHHHHHHHHHHH
Confidence 99998 8899999999999998876311 123457899999999998874211 1 2333333333444444433
Q ss_pred --CCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHH
Q 012095 378 --LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQA 453 (471)
Q Consensus 378 --~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~i~~ 453 (471)
.+-+..+... |+++-+.+-..... .+. .......+++.|+++ ||++.+.... .+.+||... .+++++++
T Consensus 887 ~~~~~i~~vrG~-Gl~~gvel~~~~~~-~~~--~~~~~~~i~~~l~~~-Gvl~~~~g~~--~~vl~~~Ppl~it~~~id~ 959 (972)
T PRK06149 887 DRHPLIGAVHGM-GLYLGVELVRDRQT-LEP--ATEETAAICDRLLEL-GVIMQPTGDH--LNILKIKPPLCLDRESADF 959 (972)
T ss_pred HhCCCeEEEeec-ceEEEEEEecCccc-CCC--ChHHHHHHHHHHHhC-CeEEeecCCC--CCEEEEECCCcCCHHHHHH
Confidence 3323223333 44455555211000 000 001245678888876 9999874221 367898776 49999999
Q ss_pred HHHHHHHHHHh
Q 012095 454 AVERIKKGLLT 464 (471)
Q Consensus 454 ~~~~l~~~l~~ 464 (471)
++++|.+++.+
T Consensus 960 ~~~~l~~~l~~ 970 (972)
T PRK06149 960 FVDMLDRVLTE 970 (972)
T ss_pred HHHHHHHHHHh
Confidence 99999999875
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.5e-14 Score=133.86 Aligned_cols=338 Identities=16% Similarity=0.113 Sum_probs=222.7
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCC-------CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGF-------TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~-------~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|.|=..++- .++.+.+|.-..+.+.. .-|+...-..++.+...++.++.||. +--|+-..+|++..
T Consensus 27 ~~ieLIASEN~--~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga--~~anVQPhSGs~AN- 101 (413)
T COG0112 27 EHIELIASENF--TSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGA--EYANVQPHSGSQAN- 101 (413)
T ss_pred hceeeeecccc--CCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCC--CccccCCCCchHHH-
Confidence 45777666665 46678888877776532 23444455667777777888888884 44577777777765
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChHHH---HHHcC--CEEEEecCCCCCCCcCCHHHHHhhhc-cCCcEEEEcCCCCCcc
Q 012095 169 LQAVLAVCSPGDEVIIPAPFWVSYPEM---ARIAD--ATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTG 242 (471)
Q Consensus 169 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~---~~~~G--~~~~~v~~~~~~~~~ld~e~l~~~l~-~~~~~i~i~~p~NPtG 242 (471)
..++.+|++|||+|+-.+-.+.++... +...| .+.+.++++.+ +..+|.|++++... .+||+|+.-.-.. -
T Consensus 102 ~av~~All~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~e-t~~IDyD~~~k~a~e~kPK~ii~G~SaY--~ 178 (413)
T COG0112 102 QAVYLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPE-TGLIDYDEVEKLAKEVKPKLIIAGGSAY--S 178 (413)
T ss_pred HHHHHHHcCCCCeEecccCCCCCcccCCCCCCccceeEEeEecccccc-cCccCHHHHHHHHHHhCCCEEEECcccc--c
Confidence 458889999999999777666555422 22223 46777787754 45799999999874 5899887521111 2
Q ss_pred cCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCH-HHH
Q 012095 243 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFV 321 (471)
Q Consensus 243 ~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~-~~i 321 (471)
..++ ++++.++|.+. +.++++|-+|......+..+++.... ..++.+|..|+| .|-|-|.+.+++ ++.
T Consensus 179 r~id---~~~~reIad~V-GA~L~~DmAHiaGLVA~G~~p~P~~~-----AdvVTtTTHKTl--rGPrGG~Il~~~eel~ 247 (413)
T COG0112 179 RPID---FKRFREIADEV-GAYLMVDMAHVAGLIAGGVHPNPLPH-----ADVVTTTTHKTL--RGPRGGIILTNDEELA 247 (413)
T ss_pred cccC---HHHHHHHHHHh-CceEEehHHHHHHHHhcccCCCCCCc-----cceEeCCcccCC--CCCCceEEEeccHHHH
Confidence 3445 88889999999 99999999987433333233333222 338999999997 788999999985 888
Q ss_pred HHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC-CcceEEeEecCCcc
Q 012095 322 AACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QGAFYLFIDFSTYY 400 (471)
Q Consensus 322 ~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p-~~g~~~~~~~~~~~ 400 (471)
+++.+..-+...+ +++...++..+..-.+..+...++..++..++.+.|.+.|.+. |+++... ..+..+.+++...
T Consensus 248 kkin~aVFPg~qg-gpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~-G~~vvsGgTdnHl~lVDl~~~- 324 (413)
T COG0112 248 KKINSAVFPGLQG-GPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER-GFKVVSGGTDNHLVLVDLRSK- 324 (413)
T ss_pred HHhhhhcCCccCC-ChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc-CCeEecCCccceEEEEEcccC-
Confidence 8888755444433 3344444433333211123334666677778888888888886 8887642 2245567777631
Q ss_pred CCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC------CCCcEEEEeec------CHHHHHHHHHHHHHHHHhh
Q 012095 401 GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG------DDTCIRISYAA------SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~------~~~~iRis~~~------~~e~i~~~~~~l~~~l~~~ 465 (471)
+ -.-.-++.+|++.||.+.--.... .+..|||.... .++++++..+-|.+++...
T Consensus 325 ~----------~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~~ 391 (413)
T COG0112 325 G----------LTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDGL 391 (413)
T ss_pred C----------CCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhcc
Confidence 1 123455667788899886543322 23579997653 5678888888888887653
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-14 Score=129.41 Aligned_cols=299 Identities=15% Similarity=0.185 Sum_probs=201.9
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCC
Q 012095 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 213 (471)
Q Consensus 134 ~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~ 213 (471)
+..+.+.+++++ .-+.+-+|+|+.++=+.++.++|++||.|+++..++.+..-++..+|+++..||-.....
T Consensus 63 I~~F~~dlaeFl--------g~D~~R~t~GARe~KfavMhal~~~gd~vV~D~~aHYttyvAAEragl~v~eVp~tg~Pe 134 (382)
T COG1103 63 IKDFLEDLAEFL--------GMDEVRVTAGAREAKFAVMHALCKEGDWVVVDSLAHYTTYVAAERAGLNVAEVPNTGYPE 134 (382)
T ss_pred HHHHHHHHHHHh--------CCceeeecccchhhHHHHHHHhccCCCEEEEcCcchHHHHHHHHhcCCeEEecCCCCCCc
Confidence 356666677775 346889999999999999999999999999999998888889999999999999765567
Q ss_pred CcCCHHHHHhhhcc-------CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCcccccc
Q 012095 214 FLLDPKVLESKLTE-------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS 286 (471)
Q Consensus 214 ~~ld~e~l~~~l~~-------~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~ 286 (471)
|.+++|...+.+.+ .+.+.++++|..-.|...+ -++++++|+++ ++.++..-+|.- |.-+.+...
T Consensus 135 y~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~D---akkva~ic~e~-gvPlllN~AYt~----Grmpvs~ke 206 (382)
T COG1103 135 YKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLAD---AKKVAKICREY-GVPLLLNCAYTV----GRMPVSGKE 206 (382)
T ss_pred eEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchh---hHHHHHHHHHc-CCceEeecceee----ccccccccc
Confidence 89999988887742 3667778999777888877 88999999999 999999999986 333344444
Q ss_pred CCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHH-hcc--------cCCCChHHHHHHHHHHhccCCChHHH
Q 012095 287 LPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-SQF--------TSGASSISQKAGVAALGLGYAGGEVV 357 (471)
Q Consensus 287 ~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~-~~~--------~~~~~~~~q~aa~~~L~~~~~~~~~~ 357 (471)
+. ..++++|-.|+++ +.-.+|.+..+.++.+.+.+.. ..+ ..+.-......+.+.+-. -.+.+
T Consensus 207 ~g----~DFiVgSGHKsmA-As~PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmASfP~---V~eRV 278 (382)
T COG1103 207 IG----ADFIVGSGHKSMA-ASAPIGVLAMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMASFPH---VVERV 278 (382)
T ss_pred cC----CCEEEecCccchh-ccCCeeEEeehhHHHHHHHhhcccccccceeeeecccccCchHHHHHhcCHH---HHHHH
Confidence 43 3489999999998 4458999999999888776543 111 111111111111221111 01122
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCeee--CCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEE-EECCCCC
Q 012095 358 SKMVKAFRERRDFLVKSFGELEGVKMS--EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA-LVPGDAF 434 (471)
Q Consensus 358 ~~~~~~~~~~r~~l~~~L~~~~g~~~~--~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~-v~pg~~f 434 (471)
.+.-++. ++.+++.+.|+++.|+.-. .|..--.+.+..|.......+-. ...--+.+.|.++ ||. +.||
T Consensus 279 krWdeEv-~kaR~fv~elEkigg~~qlG~rPk~HdLm~Fetp~f~eIakk~~---r~gyFlY~ELK~R-gI~GI~~G--- 350 (382)
T COG1103 279 KRWDEEV-EKARWFVAELEKIGGVKQLGERPKNHDLMKFETPVFHEIAKKHK---RKGYFLYEELKKR-GIHGIQPG--- 350 (382)
T ss_pred HHHHHHH-HHHHHHHHHHHHhhhHHHhCCCCcccceeeecCchHHHHHHhCc---CCceeeHHHHHhc-CccccccC---
Confidence 2222222 3455778888888555432 34333334444443211000000 0122455666665 553 4554
Q ss_pred CCCCcEEEEeec-CHHHHHHHHHHHHHHHHhh
Q 012095 435 GDDTCIRISYAA-SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 435 ~~~~~iRis~~~-~~e~i~~~~~~l~~~l~~~ 465 (471)
...+|.+|.-. +.|+++..+++++++++++
T Consensus 351 -~Tk~~K~svyGl~~Eqve~V~~afkeI~eky 381 (382)
T COG1103 351 -QTKYFKLSVYGLSWEQVEYVVDAFKEIAEKY 381 (382)
T ss_pred -ceeEEEEEeecCCHHHHHHHHHHHHHHHHhc
Confidence 35789999776 9999999999999998875
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-14 Score=149.20 Aligned_cols=156 Identities=21% Similarity=0.201 Sum_probs=116.3
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH-HHHcCCEEEEecCCCCCCCc----CCHH-----HHHh
Q 012095 154 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM-ARIADATPVILPTRISENFL----LDPK-----VLES 223 (471)
Q Consensus 154 ~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~-~~~~G~~~~~v~~~~~~~~~----ld~e-----~l~~ 223 (471)
.....+++||+|.++..++.+++.+||.||++..+|-+..+. +.+.|++++++.... +.|+ ++.+ .+++
T Consensus 189 Ad~tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hgaLiLsGa~PVYl~P~~-n~~Gi~g~I~~~~~~~~~i~~ 267 (720)
T PRK13578 189 ADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALIQAGATPVYLETAR-NPFGFIGGIDAHCFDEEYLRE 267 (720)
T ss_pred CCceEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHHcCCeEEEeeccc-cccCCcCCCChHHccHHHHHH
Confidence 446789999999999999999999999999999999998885 899999999997654 3343 3544 4888
Q ss_pred hhccC----------CcEEEEcCCCCCcccCCCHHHHHHHHHH-HHhCCCeEEEEccCCCc-cccCCC---CccccccCC
Q 012095 224 KLTEK----------SRLLILCSPSNPTGSVYPKNLLDEIARI-VAKHPRLLVLSDEIYEH-IIYAPA---THTSFASLP 288 (471)
Q Consensus 224 ~l~~~----------~~~i~i~~p~NPtG~~~~~~~l~~i~~l-~~~~~~~~ii~De~y~~-~~~~~~---~~~~~~~~~ 288 (471)
++.+. .++++|++|+. -|.+++ +++|+++ ++.+ + .|++||||+. +.|.+. .+.+.....
T Consensus 268 ~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~yd---i~~I~~~~~h~~-~-~llvDEAhgah~~F~p~~~~~p~~al~~G 341 (720)
T PRK13578 268 QIREVAPERADEARPFRLAVIQLGTY-DGTIYN---ARQVVDKIGHLC-D-YILFDSAWVGYEQFIPMMADCSPLLLELN 341 (720)
T ss_pred HHHhcCccccccccCceEEEEECCCC-cceeec---HHHHHHHhhccC-C-cEEEeCcchhhhccCcccccCChhhhhcC
Confidence 77543 48899999987 899999 8888888 6777 7 8999999884 334432 111222233
Q ss_pred CCCCceEEEecCCcccCccchhhe-eeEcCH
Q 012095 289 GMWERTLTVNGFSKAFAMTGWRLG-YIAGPK 318 (471)
Q Consensus 289 ~~~~~~i~~~S~SK~~g~~G~R~G-~v~~~~ 318 (471)
.+...++++.|..|.+ +++.-+ ++....
T Consensus 342 aD~p~i~v~QStHKtL--~alTQaS~LHvk~ 370 (720)
T PRK13578 342 ENDPGIFVTQSVHKQQ--AGFSQTSQIHKKD 370 (720)
T ss_pred CCCCCeEEEEChhhcc--hhhhhHhhhhcCC
Confidence 3334679999999997 455544 444433
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3e-14 Score=140.88 Aligned_cols=330 Identities=16% Similarity=0.138 Sum_probs=192.1
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCC-C------CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcE-EEeCChHHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGF-T------RYTPNAGTLELRSAICHKLKEENGLSYTPDQI-LVSNGAKQS 167 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~-~------~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i-~it~G~~~a 167 (471)
..|+|-..++.. ++.+.+++...+.+.. . .|+...-..++.+...++..+.||..-+.+.+ +-..+++.|
T Consensus 21 ~~l~LiaSEN~~--Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~A 98 (399)
T PF00464_consen 21 STLNLIASENYM--SPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQA 98 (399)
T ss_dssp HSEE-CTT-------HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHH
T ss_pred cCccccCccccc--CHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHH
Confidence 358888777653 4566666655554322 1 13223334567777777888888854222322 223456667
Q ss_pred HHHHHHHhcCCCCeEEEcCCCCCChHH---H--H-----HHcCCEEEEecCCCCCCCcCCHHHHHhhhc-cCCcEEEEcC
Q 012095 168 ILQAVLAVCSPGDEVIIPAPFWVSYPE---M--A-----RIADATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCS 236 (471)
Q Consensus 168 l~~~~~~l~~~gd~Vlv~~p~y~~~~~---~--~-----~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~-~~~~~i~i~~ 236 (471)
...++.+|++|||+|+..++...++.. . . .....+.+.++++++ ++.+|.|++++.+. .+||+|++..
T Consensus 99 n~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~-~~~ID~d~l~~~a~~~kPklIi~G~ 177 (399)
T PF00464_consen 99 NLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPD-TGLIDYDELEKLAKEHKPKLIICGA 177 (399)
T ss_dssp HHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TT-TSSB-HHHHHHHHHHH--SEEEEE-
T ss_pred HHHHHHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeeeecC-CCeECHHHHHHHHhhcCCCEEEECc
Confidence 888999999999999988776654431 1 1 234468888998864 46799999999875 4899888743
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCc-cccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeE
Q 012095 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 315 (471)
Q Consensus 237 p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~ 315 (471)
-.+|- .++ ++++.++|++. +.+|+.|-+|.. ++.++. .++.... -.++.+|..|+| +|-|-|.+.
T Consensus 178 S~y~~--~~d---~~~~reIad~v-ga~l~~D~sH~~GLIa~g~-~~~P~~~-----ADvvt~sThKtl--~GPrggiI~ 243 (399)
T PF00464_consen 178 SSYPR--PID---FKRFREIADEV-GAYLMADISHIAGLIAGGL-FPNPFPY-----ADVVTGSTHKTL--RGPRGGIIL 243 (399)
T ss_dssp SSTSS--------HHHHHHHHHHT-T-EEEEE-TTTHHHHHTTS-S--GCCT-----SSEEEEESSGGG---SSS-EEEE
T ss_pred hhccC--ccC---HHHHHHHHHhc-CcEEEecccccccceehhe-ecCcccc-----ceEEEeeccccc--cccCceEEE
Confidence 33322 334 78899999999 999999999874 333443 3333222 228999999997 788999999
Q ss_pred cC--------------HHHHHHHHHHHhcccCCCChHHHHHHH-HHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 012095 316 GP--------------KHFVAACNKIQSQFTSGASSISQKAGV-AALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 380 (471)
Q Consensus 316 ~~--------------~~~i~~l~~~~~~~~~~~~~~~q~aa~-~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g 380 (471)
++ +++.+++.+..-+...+.+.....++. .+|.+. .....++..++.-++.+.|.+.|.+. |
T Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea--~~~~fk~Ya~qVv~NAk~La~~L~~~-G 320 (399)
T PF00464_consen 244 TNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEA--LSPEFKEYAKQVVKNAKALAEALQER-G 320 (399)
T ss_dssp ES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred EcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcc--cCHHHHHHHHHHHHHHHHHHHHHhhC-C
Confidence 99 789999988765554443444333333 334331 12334677777888899999999887 8
Q ss_pred CeeeC-CCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC-----CCCcEEEEeec------CH
Q 012095 381 VKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-----DDTCIRISYAA------SL 448 (471)
Q Consensus 381 ~~~~~-p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~-----~~~~iRis~~~------~~ 448 (471)
+++.. ...+..+|+++... + .+..+ ++..+++.||.+..-...+ ....|||.... .+
T Consensus 321 ~~v~~ggTd~H~vlvd~~~~-~---------~~g~~-a~~~Le~~gI~vnkn~iP~d~~~~~~sGlRlGT~~lT~rG~~e 389 (399)
T PF00464_consen 321 FKVVTGGTDNHQVLVDLRSF-G---------IDGKE-AEKALEEAGIIVNKNTIPGDRSPFVPSGLRLGTPALTRRGMKE 389 (399)
T ss_dssp -EEGGGS-SSSEEEEEGGGG-T---------S-HHH-HHHHHHHTTEE-EEE--TTTSTTTT-SEEEEESHHHHHTT--H
T ss_pred cEEEECCCCCCeEEEEeccc-c---------cchHH-HHHHHHhcCeeecccccCCCCCCCCCCEEEECCHHHHhCCCCH
Confidence 88763 23356688898643 1 14444 4456778899885422221 23579998764 45
Q ss_pred HHHHHHHH
Q 012095 449 TTLQAAVE 456 (471)
Q Consensus 449 e~i~~~~~ 456 (471)
+++++..+
T Consensus 390 ~dm~~iA~ 397 (399)
T PF00464_consen 390 EDMKEIAE 397 (399)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666544
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.8e-15 Score=147.10 Aligned_cols=234 Identities=21% Similarity=0.245 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCC
Q 012095 135 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENF 214 (471)
Q Consensus 135 ~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~ 214 (471)
.+..+.+|+. || .....++++|+|.++..++.++++|||.|+++..+|-+....+.+.|+++++++.. ++.+
T Consensus 69 ~eAe~~aA~~----fG---Ad~t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~alil~ga~Pvyi~p~-~~~~ 140 (417)
T PF01276_consen 69 KEAEELAARA----FG---ADKTFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYNALILSGAIPVYIPPE-DNEY 140 (417)
T ss_dssp HHHHHHHHHH----HT---ESEEEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHHHHHHHTEEEEEEEEE-E-TT
T ss_pred HHHHHHHHHh----cC---CCeEEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHcCCeEEEecCC-cccc
Confidence 3444444444 55 45678999999999999999999999999999999999999999999999999875 3333
Q ss_pred ----cCCH-----HHHHhhhcc--CCcE---EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCc-cccCCC
Q 012095 215 ----LLDP-----KVLESKLTE--KSRL---LILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPA 279 (471)
Q Consensus 215 ----~ld~-----e~l~~~l~~--~~~~---i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~-~~~~~~ 279 (471)
.+++ +.+++++++ ..|+ ++|++|++ -|.+++ +++|+++|+++ +..|++||||+. +.|. .
T Consensus 141 gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY-~Gv~~d---i~~I~~~~h~~-~~~llvDEAhGah~~F~-~ 214 (417)
T PF01276_consen 141 GIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY-YGVCYD---IKEIAEICHKH-GIPLLVDEAHGAHFGFH-P 214 (417)
T ss_dssp S-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T-TSEEE----HHHHHHHHCCT-ECEEEEE-TT-TTGGCS-G
T ss_pred CCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC-CeEEEC---HHHHHHHhccc-CCEEEEEccccccccCC-C
Confidence 3466 899998864 3344 99999987 899999 99999999999 999999999884 3343 1
Q ss_pred CccccccCC---CCCCceEEEecCCcccCccchhhe-eeEcCHH---HHHHHHHHHhc-ccCCCChHHHHHHHHHHhccC
Q 012095 280 THTSFASLP---GMWERTLTVNGFSKAFAMTGWRLG-YIAGPKH---FVAACNKIQSQ-FTSGASSISQKAGVAALGLGY 351 (471)
Q Consensus 280 ~~~~~~~~~---~~~~~~i~~~S~SK~~g~~G~R~G-~v~~~~~---~i~~l~~~~~~-~~~~~~~~~q~aa~~~L~~~~ 351 (471)
...+...+. .....++++.|..|++ +++.-+ ++....+ -.+++.+.... .+.+|+.+..+..-.+...-
T Consensus 215 lp~~a~~~gad~~~~~~~~vvqS~HKtL--~altQts~lh~~~~~~v~~~~~~~~l~~~~TTSPSY~lmASlD~a~~~m- 291 (417)
T PF01276_consen 215 LPRSALALGADRPNDPGIIVVQSTHKTL--PALTQTSMLHVKGDRIVDHERVNEALSMHQTTSPSYPLMASLDVARAQM- 291 (417)
T ss_dssp GGTTCSSTTSS-CTSBEEEEEEEHHHHS--SS-TT-EEEEEETCCCTTHHHHHHHHHHHS-SS--HHHHHHHHHHHHHH-
T ss_pred CccchhhccCccccccceeeeechhhcc--cccccceEEEecCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH-
Confidence 112222221 1234679999999997 566654 4444433 23445443322 23344444333322222110
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHh---cCCCCCeeeCC
Q 012095 352 AGGEVVSKMVKAFRERRDFLVKSF---GELEGVKMSEP 386 (471)
Q Consensus 352 ~~~~~~~~~~~~~~~~r~~l~~~L---~~~~g~~~~~p 386 (471)
....-+++.++..++.+.+++.+ +++.++++..|
T Consensus 292 -~~~~G~~l~~~~i~~a~~~R~~i~~~~~~~~~~~~~~ 328 (417)
T PF01276_consen 292 -EEEEGRELLEEAIELAEEFRKKINRLNDIWGFKVLGP 328 (417)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHCCT-SSEESS-
T ss_pred -hhhhhHHHHHHHHHHHHHHHHHHHhcCCCceEecCCc
Confidence 01112223333344444444444 66666665544
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.7e-13 Score=144.12 Aligned_cols=154 Identities=15% Similarity=0.160 Sum_probs=118.3
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCC----cCC-----HHHHHhh
Q 012095 154 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENF----LLD-----PKVLESK 224 (471)
Q Consensus 154 ~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~----~ld-----~e~l~~~ 224 (471)
.....+++||+|.++..++.+++.+||.|+++..+|-+..+.+.+.|+++++++... +.+ .++ ++.++++
T Consensus 220 A~~t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al~L~ga~Pvyl~P~~-~~~Gi~~~i~~~~~~~e~i~~~ 298 (755)
T PRK15029 220 ADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLILTGAKPVYMVPSR-NRYGIIGPIYPQEMQPETLQKK 298 (755)
T ss_pred CCcEEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEEecccc-cccCCccCCCccccCHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999997543 222 234 8899988
Q ss_pred hcc--CCc--------EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCc-cccCCCCccccccC-----C
Q 012095 225 LTE--KSR--------LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASL-----P 288 (471)
Q Consensus 225 l~~--~~~--------~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~-~~~~~~~~~~~~~~-----~ 288 (471)
+.. ..+ +++|++|++ -|.+++ +++|+++|+++ ++.|++||||+. +.|.+.-+ ....+ .
T Consensus 299 l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~d---i~~I~~~~h~~-~~~llvDEAhGah~~F~~~~p-~~sa~~~~~~~ 372 (755)
T PRK15029 299 ISESPLTKDKAGQKPSYCVVTNCTY-DGVCYN---AKEAQDLLEKT-SDRLHFDEAWYGYARFNPIYA-DHYAMRGEPGD 372 (755)
T ss_pred HHhCchhhhccccCceEEEEECCCC-cceeeC---HHHHHHHHHhc-CCeEEEECccccccccCcccc-ccccccccccc
Confidence 843 233 899999987 899999 99999999999 999999999874 44543211 11112 1
Q ss_pred CCCCceEEEecCCcccCccchhhee-eEc
Q 012095 289 GMWERTLTVNGFSKAFAMTGWRLGY-IAG 316 (471)
Q Consensus 289 ~~~~~~i~~~S~SK~~g~~G~R~G~-v~~ 316 (471)
...-.++++.|..|++ +++.-|. +..
T Consensus 373 ~~Gad~~vvqStHKtL--~alTQaS~LHv 399 (755)
T PRK15029 373 HNGPTVFATHSTHKLL--NALSQASYIHV 399 (755)
T ss_pred cCCCceEEEEchhhcc--cchhhhhhhee
Confidence 0112349999999997 5666554 444
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.3e-13 Score=144.55 Aligned_cols=313 Identities=16% Similarity=0.145 Sum_probs=197.7
Q ss_pred CCCCC---CCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh----cC---C-CCeEEEcCCCCCChHH
Q 012095 126 TRYTP---NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV----CS---P-GDEVIIPAPFWVSYPE 194 (471)
Q Consensus 126 ~~Y~~---~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l----~~---~-gd~Vlv~~p~y~~~~~ 194 (471)
+-|.| .+|+.++...+.+++.+..|.+.. .+.. +++..+.+..++++ +. + .+.|+++.-.|.+...
T Consensus 530 hPyqp~e~sQG~lq~i~elq~~l~eLtGmd~~--Sl~p-~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpa 606 (954)
T PRK12566 530 HPFAPREQAEGYRAMIDELEAWLCAITGFDAI--CMQP-NSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPA 606 (954)
T ss_pred CCCCchhhhcCHHHHHHHHHHHHHHHHCCCeE--eecC-CchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHH
Confidence 66777 799999999999999999886533 2222 24444443444443 22 2 2678899988866666
Q ss_pred HHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc---cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCC
Q 012095 195 MARIADATPVILPTRISENFLLDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 271 (471)
Q Consensus 195 ~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~---~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y 271 (471)
.+...|++++.++.+.+ ..+|+++|+++++ +++.+|.+.+|++-++.. +.+++|+++|+++ +.++++|-++
T Consensus 607 sa~~~GieVv~Vp~D~~--G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e---~~V~eI~~iah~~-Galv~vDgA~ 680 (954)
T PRK12566 607 SAQMAGMRVVIVECDPD--GNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYE---EGIREICEVVHQH-GGQVYMDGAN 680 (954)
T ss_pred HHHHCCCEEEEeccCCC--CCcCHHHHHHHhhccCCCEEEEEEEecCcCceec---chHHHHHHHHHHc-CCEEEEEeeC
Confidence 78889999999999743 3699999999987 566677788888755443 4499999999999 9999999988
Q ss_pred CccccCCCCccccccCCCCCCceEEEecCCcccCc----cchhheeeEcCHHHHHHHHHHH------------hcccCCC
Q 012095 272 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM----TGWRLGYIAGPKHFVAACNKIQ------------SQFTSGA 335 (471)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~----~G~R~G~v~~~~~~i~~l~~~~------------~~~~~~~ 335 (471)
..-.. . ...++..+-.++++++.|+|+. .|.-+|.+.+.+++...+..+- .....+.
T Consensus 681 ~~a~~------~-l~~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~ 753 (954)
T PRK12566 681 LNAQV------G-LARPADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPW 753 (954)
T ss_pred hhhcc------C-CCChhhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeeccc
Confidence 52111 1 1112234556999999998852 2344566555555444443221 0001111
Q ss_pred Ch-HHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceE--EeEecCCccCCcccCCCCCCC
Q 012095 336 SS-ISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY--LFIDFSTYYGSEAEGFGKIEN 412 (471)
Q Consensus 336 ~~-~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~--~~~~~~~~~~~~~~~~~~~~~ 412 (471)
+. ....++..++..- ..+ +.+....-..+.+++.+.|.+..++.+.++.+.+| +.+++....+ ..+ .+
T Consensus 754 gsa~~l~~A~~Yi~~l--G~e-Lk~aa~~ailnAnYla~rL~~~~~v~~~~~~~~~~hEfii~~~~l~~--~~g----~~ 824 (954)
T PRK12566 754 GSASILPISWMYIAMM--GPQ-LADASEVAILSANYLANQLGGAFPVLYRGRNERVAHECILDLRPLKA--QTG----IS 824 (954)
T ss_pred chHHHHHHHHHHHHHH--CHH-HHHHHHHHHHHHHHHHHHhHhhCCCCcCCCCCCeeeEEEEEcccccc--ccC----CC
Confidence 11 1122233333321 234 55555555678888999987744555533333322 1233322100 001 26
Q ss_pred HHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012095 413 SESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 413 ~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~ 465 (471)
..++.++|++ +||...- ..|-..+++|++... ++++|+++++.|.++.++.
T Consensus 825 ~~dvakRL~d-~Gihapt-~~fPv~~~LmIepTE~eskeEIDrf~eAL~~I~~e~ 877 (954)
T PRK12566 825 EEDVAKRLMD-YGFHAPT-MSFPVPGTLMVEPTESESKAELDRFVEAMLSIRAEI 877 (954)
T ss_pred HHHHHHHHHH-CCcEEeE-EeeccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHH
Confidence 6889999994 5886443 344457899999886 8899999999998888763
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-13 Score=139.16 Aligned_cols=339 Identities=11% Similarity=0.093 Sum_probs=192.1
Q ss_pred cCCCeEEcCCCCC--CCCC-hHHHH--HHHHHHHHcCCCC-CCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHH
Q 012095 93 AGVSVIRLAAGEP--DFDT-PVLIA--EAGINAIREGFTR-YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (471)
Q Consensus 93 ~g~~~i~l~~g~~--~~~~-p~~v~--~a~~~~~~~~~~~-Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~ 166 (471)
.|+.+||+..|.. .++. ++.+. +++.+++.+.... .....-..+....+++.+.+..+. -..+.+++++++++
T Consensus 36 dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~v~f~~sGsE 114 (431)
T TIGR03251 36 DGRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAAVNKPSNSDVYTVAMARFVDTFARVLGD-PALPHLFFIEGGAL 114 (431)
T ss_pred CCCChhhcccChhhcCCCCCChhhhHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHhcCC-CCcCEEEEeCCcHH
Confidence 5788999888863 3443 67787 8888888753211 111111233334455555443211 13468999999999
Q ss_pred HHHHHHHHhcC--------C------CCeEEEcCCCCCChHHHHHHc-CCE-EE--EecC--------C----C--CCCC
Q 012095 167 SILQAVLAVCS--------P------GDEVIIPAPFWVSYPEMARIA-DAT-PV--ILPT--------R----I--SENF 214 (471)
Q Consensus 167 al~~~~~~l~~--------~------gd~Vlv~~p~y~~~~~~~~~~-G~~-~~--~v~~--------~----~--~~~~ 214 (471)
+++.+++.... . +..|+....+|++....+... |.. .. ..|. . + ...+
T Consensus 115 Ave~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 194 (431)
T TIGR03251 115 AVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNL 194 (431)
T ss_pred HHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCCcccCCcccccc
Confidence 99988886521 1 367999999888776444322 211 00 0111 0 0 0000
Q ss_pred c-------CCHHHHHhhhc---cCCcEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccc
Q 012095 215 L-------LDPKVLESKLT---EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS 283 (471)
Q Consensus 215 ~-------ld~e~l~~~l~---~~~~~i~i~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~ 283 (471)
. -+++++++.+. +++.++++...+.-.|. ..+++.+++|.++|++| |+++|.||++..+...|.. ..
T Consensus 195 ~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEV~tG~GrtG~~-~a 272 (431)
T TIGR03251 195 DQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEH-DALLIFDEVQTGVGLTGTA-WA 272 (431)
T ss_pred chhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHc-CCEEEEecchhccCccchH-HH
Confidence 0 12444555553 35566666544555665 56888999999999999 9999999999976443321 11
Q ss_pred cccCCCCCCceEEEecCCcccCccchhheeeEcCH--HHHHHHHH--HHhcccCCCChHHHHHHHHHHhccCCChHHHHH
Q 012095 284 FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK--HFVAACNK--IQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 359 (471)
Q Consensus 284 ~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~--~~i~~l~~--~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~ 359 (471)
+..+.-..| ++ +++|.+. .| |++.+.+ ++.+.... .....+++.++++..++.+.|+.-.. +..+++
T Consensus 273 ~~~~gv~PD--i~--~~gK~~~-~~---g~~~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~-~~l~~~ 343 (431)
T TIGR03251 273 YQQLGVQPD--IV--AFGKKTQ-VC---GIMAGRRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEE-ERLVDN 343 (431)
T ss_pred HHhcCCCCC--EE--EecccCc-cc---eEEecchHHHhhhhcccCccccCCCCCCCHHHHHHHHHHHHHHHh-cCHHHH
Confidence 111111112 33 4789863 33 6665543 22221111 11234567888998888888874110 122333
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCe-eeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCC
Q 012095 360 MVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT 438 (471)
Q Consensus 360 ~~~~~~~~r~~l~~~L~~~~g~~-~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~ 438 (471)
..+.-+..++.|.+...+.+++. ..... |.++.+.++.. .....+.+.|+++ ||++.|.. .+
T Consensus 344 ~~~~g~~l~~~L~~l~~~~~~~i~~vrg~-G~~~~i~~~~~-----------~~~~~~~~~l~~~-Gvl~~~~g----~~ 406 (431)
T TIGR03251 344 ARVQGAHLLARLHELAAEFPHLVSNPRGR-GLMCAFDLPST-----------ADRDEVIRQLYRE-GVLLLGCG----ER 406 (431)
T ss_pred HHHHHHHHHHHHHHHHHhCccceeccccc-ceeEEEEeCCH-----------HHHHHHHHHHHhC-CeEEecCC----CC
Confidence 33333334444443333343232 22333 44566677532 1345688888865 99998753 24
Q ss_pred cEEEEeec--CHHHHHHHHHHHHH
Q 012095 439 CIRISYAA--SLTTLQAAVERIKK 460 (471)
Q Consensus 439 ~iRis~~~--~~e~i~~~~~~l~~ 460 (471)
.+|++... +++++++++++|.+
T Consensus 407 ~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 407 SIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred eEEEECCccCCHHHHHHHHHHHHh
Confidence 68887664 89999999999875
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-13 Score=148.79 Aligned_cols=308 Identities=17% Similarity=0.171 Sum_probs=196.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCcEEEeC-ChHHHHHHHHHHh----cCCCC----eEEEcCCCCCChHHHHHHcCCE
Q 012095 132 AGTLELRSAICHKLKEENGLSYTPDQILVSN-GAKQSILQAVLAV----CSPGD----EVIIPAPFWVSYPEMARIADAT 202 (471)
Q Consensus 132 ~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~-G~~~al~~~~~~l----~~~gd----~Vlv~~p~y~~~~~~~~~~G~~ 202 (471)
+|..++...+.+++.+..|.+ ++.+.. |++++....+.++ .++|| .|++++..|.+....+...|.+
T Consensus 538 qG~l~~i~e~q~~l~eltG~d----~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~~ 613 (954)
T PRK05367 538 AGYRELIDQLEAWLAEITGYD----AVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGMK 613 (954)
T ss_pred HHHHHHHHHHHHHHHHHHCCC----CEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCCE
Confidence 567888899999999988853 455544 5555543333332 25665 5999999998888889999999
Q ss_pred EEEecCCCCCCCcCCHHHHHhhhcc---CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCC
Q 012095 203 PVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 279 (471)
Q Consensus 203 ~~~v~~~~~~~~~ld~e~l~~~l~~---~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~ 279 (471)
++.++++.+ ..+|+++|++++++ ++.+|++.+|++-++...+ +++|+++|+++ ++++++|.++......
T Consensus 614 vv~v~~d~~--G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~---I~eI~~i~h~~-G~~v~VDgA~~~al~~-- 685 (954)
T PRK05367 614 VVVVACDEN--GNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEET---IREICEIVHEH-GGQVYLDGANMNAQVG-- 685 (954)
T ss_pred EEEECCCCC--CCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCC---HHHHHHHHHHc-CCEEEEECcChhhccC--
Confidence 999998743 46999999999965 4567778888875444567 99999999999 9999999999632111
Q ss_pred CccccccCCCCCCceEEEecCCcccCc----cchhheeeEcCHHHHHHHHHHH-----h---cccCCCChHHHHH----H
Q 012095 280 THTSFASLPGMWERTLTVNGFSKAFAM----TGWRLGYIAGPKHFVAACNKIQ-----S---QFTSGASSISQKA----G 343 (471)
Q Consensus 280 ~~~~~~~~~~~~~~~i~~~S~SK~~g~----~G~R~G~v~~~~~~i~~l~~~~-----~---~~~~~~~~~~q~a----a 343 (471)
+. -++..+-.+++.|..|+|+. .|--+|++.+.+.+...+-... . ....+.+.+.|.. +
T Consensus 686 ----l~-~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a 760 (954)
T PRK05367 686 ----LA-RPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPIS 760 (954)
T ss_pred ----CC-ChhhcCCCEEEecCcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHH
Confidence 11 11123445888899999752 3444778877765554432210 0 0111112222211 1
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceE--EeEecCCccCCcccCCCCCCCHHHHHHHHH
Q 012095 344 VAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY--LFIDFSTYYGSEAEGFGKIENSESLCRYLL 421 (471)
Q Consensus 344 ~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll 421 (471)
..++.. ...+.+++..+..-.+.+++.+.|.+..++.+..|.+.++ +.++++.... ..+ .+..++.++|.
T Consensus 761 ~~yi~~--~G~~Glr~~a~~~~~~A~Yl~~~L~~~~~~~~~~~~~~~~~e~i~~~~~~~~--~~g----~~~~di~krL~ 832 (954)
T PRK05367 761 WMYIRM--MGAEGLRQATEVAILNANYIAKRLKDHYPVLYTGANGRVAHECILDLRPLKE--STG----ITVDDIAKRLI 832 (954)
T ss_pred HHHHHH--HCHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCCcccceEEEeecccc--cCC----CCHHHHHHHHH
Confidence 222221 1345666666666688889999987743444433322111 2233321100 000 25688999986
Q ss_pred HcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012095 422 DKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 422 ~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~~ 466 (471)
+ +|+...- ..|-.++.+||+... ++++|+++++.|.++..+..
T Consensus 833 d-~G~~~~t-~~~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~ 877 (954)
T PRK05367 833 D-YGFHAPT-MSFPVAGTLMVEPTESESKAELDRFCDAMIAIRAEID 877 (954)
T ss_pred H-CCCeEee-cCCccCCEEEEEeeecCCHHHHHHHHHHHHHHHHHHH
Confidence 5 4886544 234457889998886 88999999999988877653
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-14 Score=136.31 Aligned_cols=341 Identities=21% Similarity=0.258 Sum_probs=230.9
Q ss_pred cCCCeEEcCCCC-CCCCChHHHHHHHHHHHHc-CC------CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCCh
Q 012095 93 AGVSVIRLAAGE-PDFDTPVLIAEAGINAIRE-GF------TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 164 (471)
Q Consensus 93 ~g~~~i~l~~g~-~~~~~p~~v~~a~~~~~~~-~~------~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~ 164 (471)
.|+++++|++.+ ..+...+++++.+...+.+ |. .-|+...-...|.+.|++++ | .++.|+.+.|-
T Consensus 92 ~G~~~~N~aS~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~----G---~E~aivYs~gF 164 (467)
T KOG1358|consen 92 DGKDVLNFASANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFM----G---TEDAIVYSYGF 164 (467)
T ss_pred cCceeecccchhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhh----C---Ccceeeecccc
Confidence 678899998776 6676678888888777765 22 22554444566777777776 4 67889998887
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCC------------c-E
Q 012095 165 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKS------------R-L 231 (471)
Q Consensus 165 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~------------~-~ 231 (471)
+. +..++.++++.||.|.+.+-........+++..-.++++..+ |.+.++..+.+.+ + .
T Consensus 165 ~t-i~S~ipafsKrGDIi~~de~~nfaIq~GlqlSRS~i~~Fkhn-------dm~~lerll~E~~~~~~K~~k~~~~Rrf 236 (467)
T KOG1358|consen 165 ST-IESAIPAFSKRGDIIFVDEAVNFAIQKGLQLSRSTISYFKHN-------DMEDLERLLPEQEDEDQKNPKKALTRRF 236 (467)
T ss_pred ch-hhhcchhhhccCcEEEEehhhhHHHHHHHhhhhheeEEecCC-------CHHHHHHhccCcchhhhhccccccceEE
Confidence 75 566889999999999999887777777788888888887753 6667766653322 3 3
Q ss_pred EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCC--CCccccccCCCCCCceEEEecCCcccCccch
Q 012095 232 LILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP--ATHTSFASLPGMWERTLTVNGFSKAFAMTGW 309 (471)
Q Consensus 232 i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~ 309 (471)
|++..-.-+||...+ +.+|+++..|| ...||.||.|+....+. .+.......+ ..+-.++++|+.-+++..|
T Consensus 237 iv~EGl~~N~g~i~p---l~~iv~lk~Ky-k~RvildEs~SfG~lg~~GrGvteH~~v~-~~~iDiv~~sm~~alas~G- 310 (467)
T KOG1358|consen 237 IVVEGLYANTGDICP---LPEIVKLKNKY-KFRVILDESLSFGVLGKTGRGVTEHFGVP-ITDIDIVTASMETALASGG- 310 (467)
T ss_pred EEEEeeccCCCcccc---cHHHHHHHhhh-eEEEEEecccccccccccCccccccCCCC-ccceeeeeecccccccccC-
Confidence 444444566999999 99999999999 99999999999766543 3333333343 2466789999999998777
Q ss_pred hheeeEcCHHHHH--HHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC
Q 012095 310 RLGYIAGPKHFVA--ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (471)
Q Consensus 310 R~G~v~~~~~~i~--~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~ 387 (471)
||++|+.-+++ ++......+..+.++....++..++.. .+|-.++.+.++.....+.+.|....|+.+....
T Consensus 311 --gFc~G~~~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i----~~~~p~~~~~L~~k~~~~H~~l~~~s~~~v~~~~ 384 (467)
T KOG1358|consen 311 --GFCAGKSFIADHQRLSGSGYCFSASLPPYLAGAAIKAILI----EEWNPEIVQPLRAKVAKFHAALSSNSGFIVSGSP 384 (467)
T ss_pred --ceeecceeeEeeeeccccceeeeccCchhhhhhHHHHHHH----HhhCcchhhhhhccccccchhhhcCCceEEecCc
Confidence 99888543332 333333334445566666666666663 4555556666666666677777776677765433
Q ss_pred cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC------CCCcEEEEeec--CHHHHHHHHHHHH
Q 012095 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG------DDTCIRISYAA--SLTTLQAAVERIK 459 (471)
Q Consensus 388 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~------~~~~iRis~~~--~~e~i~~~~~~l~ 459 (471)
-...+.+.+.+..+...+. ..--++++++++.+ |+.++....-. .+.-+||++.+ ++|+++++.+.|+
T Consensus 385 ~SPi~hl~l~~~~~s~e~e---~~lL~eivd~~i~~-~~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik 460 (467)
T KOG1358|consen 385 ESPIIHLQLERSYGSREKE---EKLLEEIVDKCIAE-GVLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAELIK 460 (467)
T ss_pred CCceeeeeecccccchHHH---HHHHHHHHHHHHhh-cceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHH
Confidence 3333455554321110000 00235677777777 88877655331 23579999987 9999999999999
Q ss_pred HHHHh
Q 012095 460 KGLLT 464 (471)
Q Consensus 460 ~~l~~ 464 (471)
++...
T Consensus 461 ~~~~~ 465 (467)
T KOG1358|consen 461 EVASA 465 (467)
T ss_pred HHHHh
Confidence 87654
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-13 Score=129.50 Aligned_cols=219 Identities=15% Similarity=0.179 Sum_probs=155.0
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH----HHHHcCCEEEEe
Q 012095 131 NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVIL 206 (471)
Q Consensus 131 ~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~G~~~~~v 206 (471)
++-...|.+.|+.+-. |. --+.+.+++.++..++..++++||+|+...--|.+... .++..|.++.++
T Consensus 61 NPT~~vlE~RiAaLEG---G~-----aa~a~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fv 132 (426)
T COG2873 61 NPTTDVLEERIAALEG---GV-----AALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFV 132 (426)
T ss_pred CchHHHHHHHHHHhhc---ch-----hhhhhccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhcCcEEEEe
Confidence 3445677787877642 31 34556778888999999999999999998887776554 457889999999
Q ss_pred cCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCcccccc
Q 012095 207 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS 286 (471)
Q Consensus 207 ~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~ 286 (471)
.. .|++.++++++++||+||+.+-.||.+.+.+ +++|+++|++| ++++|+|..+.. + ..+..
T Consensus 133 d~-------~d~~~~~~aI~~nTkavf~EtigNP~~~v~D---ie~ia~iAh~~-gvpliVDNT~at----p---yl~rP 194 (426)
T COG2873 133 DP-------DDPENFEAAIDENTKAVFAETIGNPGLDVLD---IEAIAEIAHRH-GVPLIVDNTFAT----P---YLCRP 194 (426)
T ss_pred CC-------CCHHHHHHHhCcccceEEEEeccCCCccccC---HHHHHHHHHHc-CCcEEEecCCCc----c---eecch
Confidence 64 3899999999999999999999999999999 99999999999 999999998863 1 11222
Q ss_pred CCCCCCceEEEecCCcccCccchhheeeEcCH---HH---------------------HH---------HH-HHHHhccc
Q 012095 287 LPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK---HF---------------------VA---------AC-NKIQSQFT 332 (471)
Q Consensus 287 ~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~---~~---------------------i~---------~l-~~~~~~~~ 332 (471)
+ +.+-.|++.|.+|.+|=.|--+|=++.+. ++ .+ +. ....+...
T Consensus 195 ~--~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~r~~~lRDlG 272 (426)
T COG2873 195 I--EHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLG 272 (426)
T ss_pred h--hcCCCEEEEeecccccCCccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHHHHHHHHHHHhcc
Confidence 2 24556999999999976777777555321 11 11 00 11122334
Q ss_pred CCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeee
Q 012095 333 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (471)
Q Consensus 333 ~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~ 384 (471)
.+.+++.......- .+-+.-..++.-++...+.+.|++.|.+.|+
T Consensus 273 a~lsPfnAfl~lqG-------lETL~LRmerH~~NA~~vA~~L~~HpkV~~V 317 (426)
T COG2873 273 ATLSPFNAFLLLQG-------LETLSLRMERHCENALKVAEFLENHPKVAWV 317 (426)
T ss_pred cccCcHHHHHHHhc-------hhhhHHHHHHHHHhHHHHHHHHhcCCCeeee
Confidence 44555543332222 2334445566667778888899888776654
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.4e-13 Score=133.16 Aligned_cols=348 Identities=16% Similarity=0.166 Sum_probs=220.0
Q ss_pred HHHHHHHhcCCCeEEcCCCC---------CCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 012095 85 DQATALAQAGVSVIRLAAGE---------PDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP 155 (471)
Q Consensus 85 ~~~~~~~~~g~~~i~l~~g~---------~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~ 155 (471)
++.+.+++.|.+...|...+ -.-.+.+..++++.. +...|+.++...+|.+.+++.+. .
T Consensus 22 ~R~~~l~~agyN~f~l~s~dV~IDLrSDTgT~apS~~m~aAM~~----GDD~Y~gdpSv~~Lee~vael~G--------~ 89 (467)
T TIGR02617 22 YREKAIIKAGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMR----GDEAYSGSRSYYALAESVKNIFG--------Y 89 (467)
T ss_pred HHHHHHHHcCCCcccCCCCCeEEECccCCCCCCCCHHHHHHHHc----CCcccccCchHHHHHHHHHHHhC--------C
Confidence 33445556666555555544 221234556665553 66789888889999999999863 3
Q ss_pred CcEEEeCChHHHHHHHHHHhcC-CCCeEEEcCC--------CCCChHHHHHHcCCEEEEecCC--------CCCCCcCCH
Q 012095 156 DQILVSNGAKQSILQAVLAVCS-PGDEVIIPAP--------FWVSYPEMARIADATPVILPTR--------ISENFLLDP 218 (471)
Q Consensus 156 ~~i~it~G~~~al~~~~~~l~~-~gd~Vlv~~p--------~y~~~~~~~~~~G~~~~~v~~~--------~~~~~~ld~ 218 (471)
+.++.|..+..+-.++++.+++ |||++.+..+ .|......+.+.|+.++.++.+ ......+|+
T Consensus 90 E~alpthqGRgaE~Il~~~~~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl 169 (467)
T TIGR02617 90 QYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDL 169 (467)
T ss_pred ceEEECCCCchHHHHHHHhhcccccccccccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCH
Confidence 4578887778888888999998 7888775553 2223345688899998876532 112346899
Q ss_pred HHHHhhhcc----CCcEEEEcCCCC-CcccCCCHHHHHHHHHHHHhCCCeEEEEccC------CC----ccccCCCCccc
Q 012095 219 KVLESKLTE----KSRLLILCSPSN-PTGSVYPKNLLDEIARIVAKHPRLLVLSDEI------YE----HIIYAPATHTS 283 (471)
Q Consensus 219 e~l~~~l~~----~~~~i~i~~p~N-PtG~~~~~~~l~~i~~l~~~~~~~~ii~De~------y~----~~~~~~~~~~~ 283 (471)
++|++++++ +...+...-.+| -.|.++|.+.++++.++|++| |+.++.|.+ |. +-.+.+ .+
T Consensus 170 ~~le~~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~-GIplhLDgARl~nNA~fIk~rE~~a~~---~s 245 (467)
T TIGR02617 170 EGLERGIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKY-DIPVVMDSARFAENAYFIKQREAEYKN---WS 245 (467)
T ss_pred HHHHHHHhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHc-CCcEEEEhHHHHHHhhhhhhcchhhcC---CC
Confidence 999999974 222222211234 368999999999999999999 999999975 21 001222 22
Q ss_pred cccC----CCCCCceEEEecCCcccCcc-chhheeeEcCHH-HHHHHHHHHh--------cccCCCChHHHHHHHHHHhc
Q 012095 284 FASL----PGMWERTLTVNGFSKAFAMT-GWRLGYIAGPKH-FVAACNKIQS--------QFTSGASSISQKAGVAALGL 349 (471)
Q Consensus 284 ~~~~----~~~~~~~i~~~S~SK~~g~~-G~R~G~v~~~~~-~i~~l~~~~~--------~~~~~~~~~~q~aa~~~L~~ 349 (471)
+..+ ....| .+.-|+||.++.| | |+++++++ +.+.+.+.+. ....+.+.-...+++.-|.+
T Consensus 246 i~eI~rE~~~~aD--svt~slsKglgApvG---g~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e 320 (467)
T TIGR02617 246 IEQITRETYKYAD--MLAMSAKKDAMVPMG---GLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYD 320 (467)
T ss_pred HHHHHHHhhccCC--EEEEEcCCCCCCccc---ceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhh
Confidence 2221 11112 5667899999866 6 77777654 3333333222 11224555555555555654
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCcc-CCcccCCCCCCCHHHHHHHHHHcCCEEE
Q 012095 350 GYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYY-GSEAEGFGKIENSESLCRYLLDKAQVAL 428 (471)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~Ll~~~gV~v 428 (471)
.. .++++..... ..++|.+.|.+. |+.+.. .||.-++++....+ +.....+ .+..++-.|..+.||-.
T Consensus 321 ~~-~~~yl~~ri~----qv~yl~~~L~~~-Gvpi~~-~Gghav~iDa~~~lphip~~~f----pa~al~~~ly~~~GiR~ 389 (467)
T TIGR02617 321 GM-NLDWLAYRIN----QVQYLVNGLEEI-GVVCQQ-AGGHAAFVDAGKLLPHIPADQF----PAHALACELYKVAGIRA 389 (467)
T ss_pred cc-cHHHHHHHHH----HHHHHHHHHHhC-CCcEEe-cCccEEEEehhhhCCCCChhhC----cHHHHHHHHHHHcCcce
Confidence 32 2455544444 445666677666 888877 88888888743321 1111222 67888888888889863
Q ss_pred E-CCCC-CCC-----------CCcEEEEeec---CHHHHHHHHHHHHHHHHh
Q 012095 429 V-PGDA-FGD-----------DTCIRISYAA---SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 429 ~-pg~~-f~~-----------~~~iRis~~~---~~e~i~~~~~~l~~~l~~ 464 (471)
. -|+. ++. -..+|+++.. |.+.++..+++|..+.++
T Consensus 390 ~e~G~~~~~rd~~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~ 441 (467)
T TIGR02617 390 VEIGSLLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_pred EeecceecccCCCCCccCCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence 3 3432 111 1479999987 889999999999888764
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-13 Score=140.83 Aligned_cols=337 Identities=12% Similarity=0.036 Sum_probs=191.7
Q ss_pred hcCCCeEEcCCCCCC--CCC-hHHHHHHHHHH-HHcCCCCCCCCCCCHHHHHHHHHHHH----HHhCCCCCCCcEEEeCC
Q 012095 92 QAGVSVIRLAAGEPD--FDT-PVLIAEAGINA-IREGFTRYTPNAGTLELRSAICHKLK----EENGLSYTPDQILVSNG 163 (471)
Q Consensus 92 ~~g~~~i~l~~g~~~--~~~-p~~v~~a~~~~-~~~~~~~Y~~~~G~~~lr~~ia~~~~----~~~g~~~~~~~i~it~G 163 (471)
..|+.+||+..|... ++. ++.+.+|+.++ ........ +.. .......+++.+. +... -.-+.++++++
T Consensus 55 ~dG~~ylD~~sg~~~~~lGh~~p~i~~Ai~~q~~~~~l~~~-~~~-~~~~~~~la~~l~~~l~~~~p--~~~~~v~f~~S 130 (464)
T TIGR00699 55 VDGNRLLDLYSQISSIPIGYNNPALLKAAQSPEMATTLINR-PAL-GNFPSKDWAKILKEGILKVAP--KGQDQVWTGMS 130 (464)
T ss_pred CCCCEEEEccCCHhhhcCCCCCHHHHHHHHHHHHHHhhccc-ccC-CcHHHHHHHHHHHHhHHhhCC--CCcCEEEEeCC
Confidence 368889999988743 343 78899999874 33222111 111 1223344454442 2222 12368999999
Q ss_pred hHHHHHHHHHHhcC--------------------------CC---CeEEEcCCCCCChHHHHHHc-CCE-----------
Q 012095 164 AKQSILQAVLAVCS--------------------------PG---DEVIIPAPFWVSYPEMARIA-DAT----------- 202 (471)
Q Consensus 164 ~~~al~~~~~~l~~--------------------------~g---d~Vlv~~p~y~~~~~~~~~~-G~~----------- 202 (471)
+++|.+.+++.... +| ..|+....+|++....+... |..
T Consensus 131 GsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~ 210 (464)
T TIGR00699 131 GSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFD 210 (464)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCC
Confidence 99999999887621 11 26898999998776544332 211
Q ss_pred EEEecCCCCC-CC-----------cCCHHHHHhhhcc---CCcEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCeEEE
Q 012095 203 PVILPTRISE-NF-----------LLDPKVLESKLTE---KSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVL 266 (471)
Q Consensus 203 ~~~v~~~~~~-~~-----------~ld~e~l~~~l~~---~~~~i~i~~p~NPtG~~~-~~~~l~~i~~l~~~~~~~~ii 266 (471)
...+|..... .+ .-+++.+++++.. +..+|++...+...|... +++.+++|.++|++| |+++|
T Consensus 211 ~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~-g~lLI 289 (464)
T TIGR00699 211 WPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKH-NVAFI 289 (464)
T ss_pred ceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEE
Confidence 1112211000 00 0135667777742 345666554455567655 789999999999999 99999
Q ss_pred EccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHH
Q 012095 267 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAA 346 (471)
Q Consensus 267 ~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~ 346 (471)
.||++..+...|.. .......-..... +.+|+|.+| .| |++++.+ .+..........+++.++++..++.+.
T Consensus 290 ~DEV~tGfGrtG~~-fa~e~~gv~~~PD--i~t~gK~lg-~g---G~~~~~~-~~~~~~~~~~~~T~~gnp~~~aaa~a~ 361 (464)
T TIGR00699 290 VDEVQTGVGATGKF-WAHEHWNLDDPPD--MVTFSKKFQ-TA---GYFFHDP-AFRPNKPYRQFNTWMGDPSRALILREI 361 (464)
T ss_pred EeeeeeCCCCCcch-hHHHhcCCCCCCC--EEEehhhhc-cC---Cccccch-hccCCCCcccccCCCCCHHHHHHHHHH
Confidence 99999876333321 1111111100111 456899996 33 4544443 221111122334667888888888877
Q ss_pred HhccCCChHHHHHHHHHHHHHHHHHHHHhc----CCCC-CeeeC-CCcceEEeEecCCccCCcccCCCCCCCHHHHHHHH
Q 012095 347 LGLGYAGGEVVSKMVKAFRERRDFLVKSFG----ELEG-VKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYL 420 (471)
Q Consensus 347 L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~----~~~g-~~~~~-p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 420 (471)
|+.-.. + .+.+..++.-+++.+.|+ +.|. +.-.. ..-|+++-+.++.. .....+.+.+
T Consensus 362 L~~l~~-~----~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~~-----------~~~~~i~~~~ 425 (464)
T TIGR00699 362 IQEIKR-K----DLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPDE-----------AKRDKLLKKA 425 (464)
T ss_pred HHHHHh-c----CHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecCCH-----------HHHHHHHHHH
Confidence 764110 1 222233233333333333 2332 22222 13355566666531 0246788888
Q ss_pred HHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012095 421 LDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGL 462 (471)
Q Consensus 421 l~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l 462 (471)
+++ ||++.+. + .+.+||+... ++++|++++++|.+++
T Consensus 426 ~~~-Gvl~~~~---g-~~~ir~~Ppl~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 426 RNN-GVNIGGC---G-VKAIRLRPMLVFQKHHADIFLEIISKII 464 (464)
T ss_pred HHC-CcEEecC---C-CCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 876 9998763 2 3679998775 9999999999998763
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-12 Score=141.00 Aligned_cols=314 Identities=15% Similarity=0.106 Sum_probs=201.2
Q ss_pred CCCCCCC---CCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhc--------CCCCeEEEcCCCCCChH
Q 012095 125 FTRYTPN---AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC--------SPGDEVIIPAPFWVSYP 193 (471)
Q Consensus 125 ~~~Y~~~---~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~--------~~gd~Vlv~~p~y~~~~ 193 (471)
.+-|.|. +|+.++...+..++.+..|++ .--+..+|+.++-...++++- ...+.|+++.-.|.+..
T Consensus 516 ~hPyqPe~~sqG~lq~i~elq~~l~eltGmd---~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnP 592 (939)
T TIGR00461 516 IHPFQPSNQVEGYQELIAQLEKWLCSITGFD---AISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNP 592 (939)
T ss_pred cCCCCchHHhHHHHHHHHHHHHHHHHHHCCC---CcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCH
Confidence 3445543 678889999999999999965 222334455544443333332 12367999999998888
Q ss_pred HHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc---CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccC
Q 012095 194 EMARIADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 270 (471)
Q Consensus 194 ~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~---~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~ 270 (471)
..++.+|.+++.++.+. ++.+|+++|++++++ ++++|++.+|+| +|..-+ .+++|+++|+++ +.++++|-+
T Consensus 593 asa~~~G~~Vv~V~~d~--~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~--~I~eI~~iah~~-G~~v~VDgA 666 (939)
T TIGR00461 593 ASAAMAGMQVVPVNCDQ--DGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEP--TIQHACDIVHSF-GGQVYLDGA 666 (939)
T ss_pred HHHHHCCCEEEEeccCC--CCCcCHHHHHHHHhhcCCceEEEEEEeCCc-Cceecc--cHHHHHHHHHHc-CCEEEEEec
Confidence 88999999999999863 346999999999974 788999999999 777653 288999999999 899999999
Q ss_pred CCccccCCCCccccccCCCCCCceEEEecCCcccC----ccchhheeeEcCHHHHHHHHH--H-------------Hhcc
Q 012095 271 YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA----MTGWRLGYIAGPKHFVAACNK--I-------------QSQF 331 (471)
Q Consensus 271 y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g----~~G~R~G~v~~~~~~i~~l~~--~-------------~~~~ 331 (471)
+..-.. ...-++..+-.+++.|..|+|+ ..|--+|++.+.+++...+-. + ....
T Consensus 667 q~~al~-------~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s 739 (939)
T TIGR00461 667 NMNAQV-------GLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVS 739 (939)
T ss_pred ChhhCC-------CCCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCcccccccc
Confidence 853111 0111223455688999999775 345568999888766554420 0 0000
Q ss_pred cCCCCh-HHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC--CcceE--EeEecCCccCCcccC
Q 012095 332 TSGASS-ISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP--QGAFY--LFIDFSTYYGSEAEG 406 (471)
Q Consensus 332 ~~~~~~-~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p--~~g~~--~~~~~~~~~~~~~~~ 406 (471)
+.+.+. .....+..++.. ...+.+.+..+..-.+.+++.+.|.+ ++++..+ .+-++ +.++++... ...
T Consensus 740 ~~~~g~a~~~l~a~~yi~~--lG~~GL~~~a~~ailnAnYl~~rL~~--~~~~l~~~~~~~~~hEfv~~~~~~~--~~~- 812 (939)
T TIGR00461 740 AAPYGSASILPISWMYIKM--MGNEGLPKASVVAILNANYMATRLKD--HYPILFVGTLKHVAHECILDLRPLK--AKT- 812 (939)
T ss_pred ccccCcHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHHhhc--cCcccccCCCCceeEEEEEeccchh--hhc-
Confidence 111111 111222333332 13566778788778889999999987 3444332 22222 234554210 001
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEECCCCCCCCC--cEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012095 407 FGKIENSESLCRYLLDKAQVALVPGDAFGDDT--CIRISYAASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 407 ~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~--~iRis~~~~~e~i~~~~~~l~~~l~~~~ 466 (471)
..+..+++++|++. |+...- ..|-..+ .||.+-..+.++|+++++.+.++.+++.
T Consensus 813 ---g~~~~dIakrL~d~-G~hapt-~~~pv~g~lmiepTE~eskeelD~f~~al~~I~~e~~ 869 (939)
T TIGR00461 813 ---GIEAIDVAKRLQDY-GFHAPT-LSFPVPGTLMVEPTESESLEELDRFCDAMIAIKEEIN 869 (939)
T ss_pred ---CCCHHHHHHHHHhC-Ceeccc-cCCccCCeEEEEeeccCCHHHHHHHHHHHHHHHHHHH
Confidence 12678999999986 876332 2243344 3555555588999999999987766543
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.5e-16 Score=147.82 Aligned_cols=249 Identities=20% Similarity=0.223 Sum_probs=160.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCC
Q 012095 109 TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPF 188 (471)
Q Consensus 109 ~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~ 188 (471)
+.+++.+++.++. .+...|+.+....+|++.+++.+ | .+..+++.+++.+..++++++++|++.|++.+++
T Consensus 7 ~~~~m~~a~~~a~-~gd~~Yg~D~~~~~l~~~i~~l~----g----~e~a~f~~sGT~An~~al~~~~~~~~~vi~~~~a 77 (290)
T PF01212_consen 7 PTPAMLEAMAAAN-VGDDAYGEDPTTARLEERIAELF----G----KEAALFVPSGTMANQLALRAHLRPGESVICADTA 77 (290)
T ss_dssp S-HHEEHHHHHTT-SB-CCTTSSHHHHHHHHHHHHHH----T----SSEEEEESSHHHHHHHHHHHHHHTTEEEEEETTE
T ss_pred CCHHHHHHHHccc-cCCcccCCChhHHHHHHHHHHHc----C----CCEEEEeCCCChHHHHHHHHHHhcCCceeccccc
Confidence 5677888885443 34447988877788888888876 3 3466788999999999999999999999999997
Q ss_pred CCChH---HHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc------CCcEEEEcCCCCC-cccCCCHHHHHHHHHHHH
Q 012095 189 WVSYP---EMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNP-TGSVYPKNLLDEIARIVA 258 (471)
Q Consensus 189 y~~~~---~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~------~~~~i~i~~p~NP-tG~~~~~~~l~~i~~l~~ 258 (471)
|.... ......|++++.++... +..+|+++|++.+.. ++++|+|.+|+|- .|.++|.+++++|.++|+
T Consensus 78 Hi~~~E~ga~~~~~G~~~~~l~~~~--~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~ 155 (290)
T PF01212_consen 78 HIHFDETGAIEELSGAKLIPLPSDD--DGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAR 155 (290)
T ss_dssp HHHHSSTTHHHHHTTCEEEEEBECT--GTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHH
T ss_pred eeeeeccchhhHhcCcEEEECCCcc--cCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHH
Confidence 65322 33467999999998653 256999999999854 5789999999985 489999999999999999
Q ss_pred hCCCeEEEEccCCC--ccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCC
Q 012095 259 KHPRLLVLSDEIYE--HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGAS 336 (471)
Q Consensus 259 ~~~~~~ii~De~y~--~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~ 336 (471)
+| ++.++.|-+=- ...+. ..++..+.. .-.++.-|++|.+++++ -+.+++++++++...+.+........
T Consensus 156 ~~-gl~lhmDGARl~~a~~~~---~~~~~e~~~--~~D~v~~~~tK~~g~~~--Gavl~~~~~~i~~~~~~~k~~gg~~~ 227 (290)
T PF01212_consen 156 EH-GLPLHMDGARLANAAAAL---GVSLAEIAA--GADSVSFGGTKNGGAPG--GAVLAGNKEFIAKARRQRKRLGGGMR 227 (290)
T ss_dssp HH-T-EEEEEETTHHHHHCHH---HHHHHHHHT--TSSEEEEETTSTT-SSS--EEEEEESHHHHHHHHHHHHHHTHHHH
T ss_pred hC-ceEEEEehhhHHHhhhcc---cccHHHHhh--hCCEEEEEEEccccccc--ceEEEechHHHHHHHHHHHHhccCee
Confidence 99 99999997721 11110 112222221 22266778999988755 25667899987766554443321111
Q ss_pred hHHHHHH-----HHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 012095 337 SISQKAG-----VAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 380 (471)
Q Consensus 337 ~~~q~aa-----~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g 380 (471)
.....++ ...+.. .+.|. ....+..++.+.+.+.|+.+++
T Consensus 228 ~~G~~~a~~~~~~~~l~~---l~~~~-~~~~~~~~~A~~La~~l~~~~~ 272 (290)
T PF01212_consen 228 QAGVLAAAELYQFAALRA---LELWL-ERARHANAMAKRLAAGLEALGG 272 (290)
T ss_dssp HTTHHHHHHHHHHHHHCH---EECSH-HHHHCHHHHHHCHHHCHHEECE
T ss_pred ecceeeeechhhHHHHHH---HHhhH-HHHHHHHHHHHHHHHHHHHCCC
Confidence 0001111 012211 12233 3334455567778888888733
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.4e-13 Score=127.77 Aligned_cols=351 Identities=13% Similarity=0.084 Sum_probs=218.0
Q ss_pred cCCCeEEcCCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~~~--~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+++||+..+... ++. .|++.+++.+...+..+...+. -+.+ .-.+++.+.+..+-. .++.|.+.+++++|..
T Consensus 54 ~g~EyiD~~ssw~~~~~Ghanpev~ral~~q~~k~~hs~~~~-~t~e-av~l~~~l~~~~~~~-~~~rvff~nsGTeAne 130 (433)
T KOG1401|consen 54 DGKEYIDFTSSWAVTILGHANPEVARALAEQAKKLGHSSNGY-FTLE-AVELEEVLSAVLGKG-SAERVFFCNSGTEANE 130 (433)
T ss_pred CcceeeeeccceeccccCCCCHHHHHHHHHHHhhheeccCcc-ccHH-HHHHHHHHHhcccCC-CccEEEEecCCcHHHH
Confidence 57789999888733 222 5888888888776532211111 1122 222334443333322 6789999999999999
Q ss_pred HHHHHhcC------CCC--eEEEcCCCCCChHH-HHHHcCCEEEEecCCC---C---CCCcCCHHHHHhhhccCC---cE
Q 012095 170 QAVLAVCS------PGD--EVIIPAPFWVSYPE-MARIADATPVILPTRI---S---ENFLLDPKVLESKLTEKS---RL 231 (471)
Q Consensus 170 ~~~~~l~~------~gd--~Vlv~~p~y~~~~~-~~~~~G~~~~~v~~~~---~---~~~~ld~e~l~~~l~~~~---~~ 231 (471)
.+++...+ +-+ .|+....+|++-.. .+...+......|.++ + -.+ -|..++++.++.+. .+
T Consensus 131 ~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~y-nd~t~l~k~~~~h~~~IaA 209 (433)
T KOG1401|consen 131 TALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEY-NDSTALEKLFESHKGEIAA 209 (433)
T ss_pred HHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeeccc-CCHHHHHHHHHhCCCceEE
Confidence 88887532 112 38888888876543 3333343333443322 1 011 17889999887544 45
Q ss_pred EEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCC-ccccccCCCCCCceEEEecCCcccCccch
Q 012095 232 LILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT-HTSFASLPGMWERTLTVNGFSKAFAMTGW 309 (471)
Q Consensus 232 i~i~~p~NPtG-~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~g~~G~ 309 (471)
+++.--+--.| ...+++.+..|..+|+++ |+++|.||+..+|...+.. ...+...-+ -+.++.|.++ .|+
T Consensus 210 VIvEPiqGaGG~~p~~peFl~~L~k~C~~~-~vl~I~DEV~tG~gR~g~~~a~e~~~~~P------DI~t~aK~L~-gGl 281 (433)
T KOG1401|consen 210 VIVEPIQGAGGIIPADPEFLIGLRKECDDN-GVLLIFDEVQTGLGRLGYGWAQEYFGVTP------DITTVAKPLG-GGL 281 (433)
T ss_pred EEEecccCCCCcccCCHHHHHHHHHHHhhc-CceEEeehhhhCccccchHHHHHHhCcCC------cceeehhhcc-CCc
Confidence 55543354456 567889999999999999 9999999999986543321 112222222 2667889998 999
Q ss_pred hheeeEcCHHHHHHHHHHH---hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC
Q 012095 310 RLGYIAGPKHFVAACNKIQ---SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (471)
Q Consensus 310 R~G~v~~~~~~i~~l~~~~---~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p 386 (471)
.+|..++++++.+.+.--. ...+++.++++..++...|+.-. ..+++.++.+.-+..|+.+.+.+.+.+-...-.-
T Consensus 282 PigA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~-~~e~~k~vs~~~k~L~~~l~e~~~~~~~~i~g~~ 360 (433)
T KOG1401|consen 282 PIGATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELK-DPETLKNVSKIGKELRKLLDEYLKKTPNSICGGV 360 (433)
T ss_pred eeEEEeehHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHhccCCCceeeee
Confidence 9999999999999886432 25677889999999999988643 3788899888888899999999887532211112
Q ss_pred CcceEEeEecCCccC-C-cccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012095 387 QGAFYLFIDFSTYYG-S-EAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 387 ~~g~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~~ 464 (471)
..++++.+.+..... . ..++..+ .-...+...+++ .||.++|-. -++..+++|.+++.++.+.+++.+
T Consensus 361 grgl~ig~~~~~p~~~~~d~~~~~~-ll~~~~~~~~~~-~gv~i~P~~--------~l~~~~~~E~i~~~l~i~~~~l~~ 430 (433)
T KOG1401|consen 361 GRGLVIGFEFEGPVYKFADAAREQG-LLILTLGKGLLE-EGVRIAPIY--------LLTVEHTPEVIQRLLTILEKVLSA 430 (433)
T ss_pred eeEEEEEEEEeechhhhhhhhhhhh-HHHHHHhccccc-ceEEEeccc--------cccccCcHHHHHHHHHHHHHHHHH
Confidence 334444333322111 0 0000000 001112222333 367777721 144445789999999999999887
Q ss_pred hC
Q 012095 465 LR 466 (471)
Q Consensus 465 ~~ 466 (471)
+.
T Consensus 431 ~~ 432 (433)
T KOG1401|consen 431 LN 432 (433)
T ss_pred hc
Confidence 53
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.8e-13 Score=130.99 Aligned_cols=313 Identities=12% Similarity=0.060 Sum_probs=201.2
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhc-CCCCeEEEcCCCCCC
Q 012095 113 IAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-SPGDEVIIPAPFWVS 191 (471)
Q Consensus 113 v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~-~~gd~Vlv~~p~y~~ 191 (471)
..+++.+.+-. ..+++| -..++.+.+.+.+.+.++.+-+.+-++++.|++.+++.++..++ ++||.|++.. .|..
T Consensus 19 ~~~~~~~~~~~-~~HRs~--~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~FG~ 94 (374)
T TIGR01365 19 SIEELKNAPLG-RSHRSK--LGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-SFGK 94 (374)
T ss_pred hHHHHhhhhcc-cCcCCH--HHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-HHHH
Confidence 45555543322 233433 34677777778888888853222235668889999999999998 5899888865 5544
Q ss_pred h-H-HHHHHcCC-EEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEc
Q 012095 192 Y-P-EMARIADA-TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 268 (471)
Q Consensus 192 ~-~-~~~~~~G~-~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~D 268 (471)
- . ++++..|+ ++..+.... +-.+++++++. + +.+++++---.||+..+ +++++.. .+ +.++|+|
T Consensus 95 r~~~eia~~~g~~~v~~l~~~~--g~~~~~~~ve~----~-~~v~~vhnETSTGv~np---v~~i~~~--~~-~~lliVD 161 (374)
T TIGR01365 95 GWVTDVTKQLKLPDVRVLEAEY--GKLPDLKKVDF----K-NDVVFTWNGTTSGVRVP---NGDFIPA--DR-EGLTICD 161 (374)
T ss_pred HHHHHHHHhcCCCCcEEEcCCC--CCCCCHHHcCC----C-CCEEEecCCCchheecc---ccccccc--cC-CCcEEEE
Confidence 3 3 77888999 477776543 33579998873 1 22556666668999999 4444422 15 7899999
Q ss_pred cCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHH--------------------
Q 012095 269 EIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-------------------- 328 (471)
Q Consensus 269 e~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~-------------------- 328 (471)
.+-+.. + ... .++ +-.+++.|--|.+++|+ -+++++.+++.+++.....
T Consensus 162 avSs~g---~-~~l---~~d---~iDv~~tgsQK~L~~pp-Gls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~ 230 (374)
T TIGR01365 162 ATSAAF---A-QDL---DYH---KLDVVTFSWQKVLGGEG-AHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKK 230 (374)
T ss_pred ccchhc---C-CCC---Chh---HCcEEEEechhccCCCC-ceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhh
Confidence 887642 1 111 111 24478888999998655 3677888888877655210
Q ss_pred ---hcccCCCChHHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHHHHHhcCCCC-CeeeCC----CcceEEeEecCCc
Q 012095 329 ---SQFTSGASSISQKAGVAALGLGYAGG-EVVSKMVKAFRERRDFLVKSFGELEG-VKMSEP----QGAFYLFIDFSTY 399 (471)
Q Consensus 329 ---~~~~~~~~~~~q~aa~~~L~~~~~~~-~~~~~~~~~~~~~r~~l~~~L~~~~g-~~~~~p----~~g~~~~~~~~~~ 399 (471)
..+.+.++....+++..+|..- .+ ..++.+.++++++++.+++.++++ | +.+... .+...+.+.++..
T Consensus 231 ~~~~~t~~TP~v~~l~a~~~~l~~i--~~egGle~~~~Rh~~~a~~l~~~l~~l-g~l~~~~~~~~~rS~tvt~v~~~~~ 307 (374)
T TIGR01365 231 IFEGSTINTPSMLCVEDWLDALKWA--ESIGGLKPLIARADDNLAVLEAFVAKN-NWIHFLAETPEIRSNTSVCLKVVDP 307 (374)
T ss_pred hhcCCCCCChHHHHHHHHHHHHHHH--HHccCHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCChhhcCCCeEEEEeCCc
Confidence 1223334444455555555420 02 248899999999999999999998 6 665542 2333344555432
Q ss_pred -cCCcccCCCCCCC-----HHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 012095 400 -YGSEAEGFGKIEN-----SESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLL 463 (471)
Q Consensus 400 -~~~~~~~~~~~~~-----~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~ 463 (471)
+... ..+ ..+|.+.|.++ ||.+.+|..--.+..|||.... +.++++.++..|.=+.+
T Consensus 308 ~~~~~------~~~~~~~~~~~~~~~l~~~-gi~i~~G~~~~~~~~fRIg~~G~i~~~di~~l~~~l~~~~~ 372 (374)
T TIGR01365 308 AIDAL------DEDAQADFAKELISTLEKE-GVAYDIGSYRDAPSGLRIWCGATVEKSDLECLCPWLDWAFA 372 (374)
T ss_pred ccccc------ccchhhHHHHHHHHHHHHC-CEEEeccccccCCCceEEecCCcCCHHHHHHHHHHHHHHHh
Confidence 1000 002 46777777665 9999988754445789998765 88999999999875544
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-12 Score=137.96 Aligned_cols=149 Identities=13% Similarity=0.172 Sum_probs=112.1
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCc----CC-----HHHHHhh
Q 012095 154 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL----LD-----PKVLESK 224 (471)
Q Consensus 154 ~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~----ld-----~e~l~~~ 224 (471)
.....+++||+|.++..++.+++.+||.||++..+|-+..+.+.+.|+++++++... +.|+ ++ .+.++++
T Consensus 210 Ad~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~haLilsga~PVYl~P~r-n~~Gi~g~I~~~~~~~e~i~~~ 288 (714)
T PRK15400 210 ADRSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTHLMMMSDVTPIYFRPTR-NAYGILGGIPQSEFQHATIAKR 288 (714)
T ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEEecccc-cccCCccCCCccccCHHHHHHH
Confidence 446789999999999999999999999999999999999999999999999997654 3332 34 8999998
Q ss_pred hccC-----CcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCcc-ccCCCCc-cccccC-CCCCCceEE
Q 012095 225 LTEK-----SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI-IYAPATH-TSFASL-PGMWERTLT 296 (471)
Q Consensus 225 l~~~-----~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~-~~~~~~~-~~~~~~-~~~~~~~i~ 296 (471)
+.+. ++.++|.+|+. -|.+++ ++.|.++|+.+ + |++||||+.. .|.+.-. .+.... ....+.+++
T Consensus 289 i~~~p~ak~p~~~vit~pTY-dG~~yd---~~~I~~~~~~~-~--ilvDEAwgah~~F~p~~~~~sam~~ga~~~~~i~v 361 (714)
T PRK15400 289 VKETPNATWPVHAVITNSTY-DGLLYN---TDFIKKTLDVK-S--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYE 361 (714)
T ss_pred HHhCccccCccEEEEECCCC-ccEecC---HHHHHHHhCCC-C--EEEEccchhhhccCcccCCcChhhcCCCCCCceEE
Confidence 8542 33788889965 899999 88888999877 6 6899999853 3433211 111111 111256799
Q ss_pred EecCCcccCccchhhe
Q 012095 297 VNGFSKAFAMTGWRLG 312 (471)
Q Consensus 297 ~~S~SK~~g~~G~R~G 312 (471)
+.|..|.+ +|+.-+
T Consensus 362 tQStHKtL--~alTQa 375 (714)
T PRK15400 362 TQSTHKLL--AAFSQA 375 (714)
T ss_pred EEchhhcc--cchhHH
Confidence 99999997 455544
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.7e-12 Score=130.49 Aligned_cols=328 Identities=13% Similarity=0.119 Sum_probs=202.8
Q ss_pred HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCC-C---------C-CCCcEEEeCChHHHHHHHHHHh----cC----
Q 012095 117 GINAIREGFTRYTPNAGTLELRSAICHKLKEENGL-S---------Y-TPDQILVSNGAKQSILQAVLAV----CS---- 177 (471)
Q Consensus 117 ~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~-~---------~-~~~~i~it~G~~~al~~~~~~l----~~---- 177 (471)
+..++......|...+...++.+.+.+++.+..+. + . +...-++|+|++++...++.+. +.
T Consensus 110 l~~~lN~n~~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~ 189 (522)
T TIGR03799 110 LMVALNQNLVKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGD 189 (522)
T ss_pred HHHHhcCCcceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhcccccc
Confidence 44455554555555667789999999999887641 1 0 1123577889998887665553 11
Q ss_pred ------------------CCCeEEEcCCCCCChHHHHHHcCC---EEEEecCCCCCCCcCCHHHHHhhhc----cCCcEE
Q 012095 178 ------------------PGDEVIIPAPFWVSYPEMARIADA---TPVILPTRISENFLLDPKVLESKLT----EKSRLL 232 (471)
Q Consensus 178 ------------------~gd~Vlv~~p~y~~~~~~~~~~G~---~~~~v~~~~~~~~~ld~e~l~~~l~----~~~~~i 232 (471)
++..|++++-.|.+....++..|. +++.||++. ++.+|+++|+++++ ++++.+
T Consensus 190 ~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~--~g~~d~~~L~~~i~~~~~~g~~~~ 267 (522)
T TIGR03799 190 FKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDA--NNRIDVDALRDKCAELAEQNIKPL 267 (522)
T ss_pred ccccccccchhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCC--CCcCCHHHHHHHHHHHHHCCCCcE
Confidence 134688899999999999999998 789999864 46799999999885 355555
Q ss_pred EEc--CCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCcccccc-CCCCCCceEEEecCCcccCccch
Q 012095 233 ILC--SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS-LPGMWERTLTVNGFSKAFAMTGW 309 (471)
Q Consensus 233 ~i~--~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~-~~~~~~~~i~~~S~SK~~g~~G~ 309 (471)
.|+ ..++.||.+-| +++|+++|+++ ++|+++|.+|+....-.. .+.. +.+...-..+..+..|.++ ...
T Consensus 268 ~vvataGtt~tGaiDp---l~eIa~i~~~~-g~~lHVDaA~gg~~~~~~---~~r~~l~gle~aDSit~d~HK~l~-~P~ 339 (522)
T TIGR03799 268 AIVGVAGTTETGNIDP---LDEMADIAQEL-GCHFHVDAAWGGATLLSN---TYRHLLKGIERADSVTIDAHKQLY-VPM 339 (522)
T ss_pred EEEEEecCcCCCCcCC---HHHHHHHHHHc-CCeEEEEchhhhHHHhCH---HHHHHhcCchhCCEEEEChhhcCC-cCc
Confidence 443 55779999999 99999999999 999999999985432110 1101 1111123467788999764 335
Q ss_pred hheeeEcC-HHHHHHHHHHHhc-----------ccC-CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhc
Q 012095 310 RLGYIAGP-KHFVAACNKIQSQ-----------FTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 376 (471)
Q Consensus 310 R~G~v~~~-~~~i~~l~~~~~~-----------~~~-~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~ 376 (471)
-+|+++.. +++.+.+.....+ +++ +.-+.....+..+|+. .....++++.++..+.++++.+.|+
T Consensus 340 g~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~--lG~~G~~~ii~~~~~la~~l~~~L~ 417 (522)
T TIGR03799 340 GAGMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHI--IGRKGYELLIDQSIEKAKYFADLIQ 417 (522)
T ss_pred ccEEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68888775 4555544321000 011 1111111223333432 1246688899999999999999999
Q ss_pred CCCCCeeeCC-CcceEEeEec-CCccCCcc-----cCCCCC-----CCHHHHHHHHHHcCCEEEECCC----CC-CCC-C
Q 012095 377 ELEGVKMSEP-QGAFYLFIDF-STYYGSEA-----EGFGKI-----ENSESLCRYLLDKAQVALVPGD----AF-GDD-T 438 (471)
Q Consensus 377 ~~~g~~~~~p-~~g~~~~~~~-~~~~~~~~-----~~~~~~-----~~~~~l~~~Ll~~~gV~v~pg~----~f-~~~-~ 438 (471)
+.+++++..+ .-+. +.+++ |....... +..... .-...+.+++.+.+.+++.+-. .+ +.. -
T Consensus 418 ~~~~~el~~~p~l~i-v~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~ 496 (522)
T TIGR03799 418 QQPDFELVTEPELCL-LTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTV 496 (522)
T ss_pred hCCCeEEecCCCccE-EEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcE
Confidence 9989987654 4454 34443 33211000 000000 0113455565666445555322 11 111 3
Q ss_pred cEEEEeec---CHHHHHHHHHH
Q 012095 439 CIRISYAA---SLTTLQAAVER 457 (471)
Q Consensus 439 ~iRis~~~---~~e~i~~~~~~ 457 (471)
.+|++++. ++++++..++.
T Consensus 497 ~lR~~~~np~tt~~~i~~~l~~ 518 (522)
T TIGR03799 497 VFRVVLANPLTTHEILQDILDE 518 (522)
T ss_pred EEEEEecCCCCCHHHHHHHHHH
Confidence 69999986 67888887654
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4e-12 Score=126.16 Aligned_cols=354 Identities=13% Similarity=0.068 Sum_probs=207.3
Q ss_pred cCCCeEEcCCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHH
Q 012095 93 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPN--AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (471)
Q Consensus 93 ~g~~~i~l~~g~~~--~~~-p~~v~~a~~~~~~~~~~~Y~~~--~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~a 167 (471)
.|+.+||-.+|... .+- .+++.+|+.+++.+-. .|.+. .+.+ -..+++.+.+..+- -+-++|++|+|++++
T Consensus 42 ~G~r~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~l~-~~~~~~~t~~P--a~~LA~~L~~~aP~-~~l~~vFf~~sGSeA 117 (449)
T COG0161 42 DGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLP-HVMFGGFTHEP--AIELAEKLAELAPE-GGLDHVFFTDSGSEA 117 (449)
T ss_pred CCCEEEecccHHHHhhcCcCCHHHHHHHHHHHHhCC-chhhcccCCch--HHHHHHHHHHhCCC-CCccEEEEeCCchHH
Confidence 57788887777633 333 6889999999987622 22121 2222 44555555544331 124799999999999
Q ss_pred HHHHHHHhc-------CCC-CeEEEcCCCCCChHHHHHHcCC--------------EEEEecCCCC------CCCc----
Q 012095 168 ILQAVLAVC-------SPG-DEVIIPAPFWVSYPEMARIADA--------------TPVILPTRIS------ENFL---- 215 (471)
Q Consensus 168 l~~~~~~l~-------~~g-d~Vlv~~p~y~~~~~~~~~~G~--------------~~~~v~~~~~------~~~~---- 215 (471)
++.+++... +|. ..++.-..+|++-.-.+-..|. .+..+|.... +.+.
T Consensus 118 vEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~ 197 (449)
T COG0161 118 VETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFA 197 (449)
T ss_pred HHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCChHHHH
Confidence 999988753 243 3477777888753322211111 1222222210 1111
Q ss_pred CCHHHHHhhhcc---CCcEEEEcCC--CCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCC
Q 012095 216 LDPKVLESKLTE---KSRLLILCSP--SNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289 (471)
Q Consensus 216 ld~e~l~~~l~~---~~~~i~i~~p--~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 289 (471)
-..++|++.+.. .+-+-+|..| +--+|. ++++..|+++.++|++| |+++|.||+-..|--.|. .|..-
T Consensus 198 ~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky-~ILlI~DEV~tGFGRTG~---~FA~e-- 271 (449)
T COG0161 198 EAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKY-GILLIADEVATGFGRTGK---MFACE-- 271 (449)
T ss_pred HHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHc-CcEEEeecceeCCCcCch---hhhhh--
Confidence 125667776643 3445556666 444674 66777899999999999 999999999888643332 22211
Q ss_pred CCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHH-----HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHH
Q 012095 290 MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI-----QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364 (471)
Q Consensus 290 ~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~-----~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~ 364 (471)
.++..--+-+++|.+.-.=+.+|.+++.+++.+.+..- ....+++.++++.+++.+.|+.-. .+.++++..+.-
T Consensus 272 ~~gi~PDi~~~aKGLT~GY~Pl~a~l~~~~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e-~e~l~~~~~~~~ 350 (449)
T COG0161 272 HAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILE-EEDLLERVAEIG 350 (449)
T ss_pred hcCCCCCeeeecccccccchhhHhHhhhHHHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHH-hcCHHHHHHHHH
Confidence 01111124457899863447788888899998887653 344677899999999988887521 134444444333
Q ss_pred HHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe
Q 012095 365 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY 444 (471)
Q Consensus 365 ~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~ 444 (471)
....+.|.+.+.+.|.+-=+. .-|+..-+.+-...+. ...+ ...-...+...++++ |++++|.. +.+=++.
T Consensus 351 ~~l~~~L~~~l~~~p~VgdVR-~~Gli~~iElv~d~~t-~~~f-~~~~~~~~~~~~~e~-Gl~iRp~g-----~~i~~~P 421 (449)
T COG0161 351 AYLQAGLQAALADHPLVGDVR-GLGLIGAIELVADKAT-KTPF-EARVGARVRAAALER-GLLIRPLG-----DVIYLMP 421 (449)
T ss_pred HHHHHHHHHhcccCCcEEEee-ccceEEEEEEeccccc-ccch-hhhHHHHHHHHHHHC-CeEEeecC-----CEEEEcC
Confidence 333333333333333332222 3355455555432110 0000 001245666766665 99999963 2333333
Q ss_pred e--cCHHHHHHHHHHHHHHHHhhC
Q 012095 445 A--ASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 445 ~--~~~e~i~~~~~~l~~~l~~~~ 466 (471)
. .++++|++.++++.+++++..
T Consensus 422 Pliit~~eid~l~~~l~~al~~~~ 445 (449)
T COG0161 422 PLIITREEIDELVDALREALDETL 445 (449)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHH
Confidence 3 389999999999999998654
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-12 Score=132.62 Aligned_cols=277 Identities=15% Similarity=0.154 Sum_probs=196.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcC-----C---CC
Q 012095 109 TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS-----P---GD 180 (471)
Q Consensus 109 ~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~-----~---gd 180 (471)
+++...+.+...+..+...-...++..++.+.+..++.+.++.+ ....=.+|+|+|+++.+.+++..+ . +.
T Consensus 74 ~~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~-~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~ 152 (460)
T COG0076 74 VPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAP-EEASGTFTSGGTEANLLALLAARERWRKRALAESG 152 (460)
T ss_pred CHHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCC-CCCceEEEcChHHHHHHHHHHHHHHHHHHhhhccc
Confidence 46677788888877655433334478999999999999999965 444668999999999877776421 1 11
Q ss_pred ------eEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcE--EEEcCCCCCcccCCCHHHHHH
Q 012095 181 ------EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRL--LILCSPSNPTGSVYPKNLLDE 252 (471)
Q Consensus 181 ------~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~--i~i~~p~NPtG~~~~~~~l~~ 252 (471)
+|+++.-.|.++...++.+|.+...+++.+. ++.+|++++++++.+.+.. |+-+.++-+||.+=+ +++
T Consensus 153 ~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~-~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~iDd---i~~ 228 (460)
T COG0076 153 KPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPT-DYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDD---IEE 228 (460)
T ss_pred ccCCCCeEEecCcchhHHHHHHHHhCCCceeEEeccC-ccccCHHHHHHHHHhhccCceEEEEecCCCCCccCC---HHH
Confidence 6999999999999999999999999999875 6889999999999887665 777888899999888 999
Q ss_pred HHHHHHhCCCeEEEEccCCCcccc--CCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHH-HHHHHHHHHh
Q 012095 253 IARIVAKHPRLLVLSDEIYEHIIY--APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-FVAACNKIQS 329 (471)
Q Consensus 253 i~~l~~~~~~~~ii~De~y~~~~~--~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~-~i~~l~~~~~ 329 (471)
|.++|+++ ++++.+|.||+.+.. ......-...++ .-.-+.-++.|.. +.-..+||++..++ -......+..
T Consensus 229 ia~ia~~~-~i~lHVDAA~GG~~~pf~~~~~~~~f~l~---~vdSIt~d~HK~g-~aP~~~G~il~rd~e~l~~~~~~~~ 303 (460)
T COG0076 229 LADIAEEY-GIWLHVDAAFGGFLLPFLEPDGRWDFGLE---GVDSITVDGHKYG-LAPIGCGVVLFRDEEALRRILIFAD 303 (460)
T ss_pred HHHHHHHc-CCcEEEEccccceeecccCccchhhcCCC---CceEEEECccccc-CCCCCceEEEEECHHHhhhhhhccc
Confidence 99999999 999999999998653 221111011221 2234556799986 57788999998654 3333332221
Q ss_pred cccC-----------CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC-CCcceEEeEecC
Q 012095 330 QFTS-----------GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLFIDFS 397 (471)
Q Consensus 330 ~~~~-----------~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~-p~~g~~~~~~~~ 397 (471)
++.. +-+.....++.+.+.. ...+.+.++.++..+.++++.+.|++.+.+++.. |..+. +.++.+
T Consensus 304 ~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~--lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l~~-V~fr~~ 380 (460)
T COG0076 304 YYLPGGGIPNFTILGSRPGRQALALYANLRR--LGREGYRKLLDRTLELARYLAEELEKLGDFELVNEPELPI-VAFRLK 380 (460)
T ss_pred ccCCCCCcCceeEeeccchHHHHHHHHHHHH--hCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCccce-EEEEcC
Confidence 1111 1112112222223332 1357788888888999999999999985588765 54444 666775
Q ss_pred C
Q 012095 398 T 398 (471)
Q Consensus 398 ~ 398 (471)
+
T Consensus 381 ~ 381 (460)
T COG0076 381 D 381 (460)
T ss_pred C
Confidence 4
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-11 Score=122.98 Aligned_cols=293 Identities=11% Similarity=0.042 Sum_probs=197.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcC--CCCeEEEcCCCCCChHHHHHHcCCEEEEecCCC
Q 012095 133 GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPVILPTRI 210 (471)
Q Consensus 133 G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~ 210 (471)
+..++.+.+.+|+.+.+|.+-+...=++|+|+|+++..++.+.-+ +...|++++-+|.+...+++.+|.+++.||++
T Consensus 130 ~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d- 208 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDTL- 208 (470)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHHhcCCcceEeccC-
Confidence 678999999999999999642222358899999999887776533 33478889999999999999999999999986
Q ss_pred CCCCcCCHHHHHhhhccCC---cEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCe-----EEEEccCCCccccCCCCcc
Q 012095 211 SENFLLDPKVLESKLTEKS---RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL-----LVLSDEIYEHIIYAPATHT 282 (471)
Q Consensus 211 ~~~~~ld~e~l~~~l~~~~---~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~-----~ii~De~y~~~~~~~~~~~ 282 (471)
.++.+|+++|++++.+++ -+|+.+.++-++|.+=+ +++|.++|+++ ++ |+.+|.+|+++...-....
T Consensus 209 -~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDp---i~eIa~i~~~~-g~~~~~iwlHVDAA~GG~~lPf~~~~ 283 (470)
T PLN02263 209 -VSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDD---LDLVIKTLEEC-GFSQDRFYIHCDGALFGLMMPFVKRA 283 (470)
T ss_pred -CCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCC---HHHHHHHHHHc-CCccCCeeEEEeccchhhHhhhcccc
Confidence 457899999999986543 34445778889999999 99999999998 86 9999999987653100011
Q ss_pred ccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcc-----cCCCChH--HHHHHHHHHhccCCChH
Q 012095 283 SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF-----TSGASSI--SQKAGVAALGLGYAGGE 355 (471)
Q Consensus 283 ~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~-----~~~~~~~--~q~aa~~~L~~~~~~~~ 355 (471)
..+.+. ..-.=+.-+..|.++ .....|.++..++.++.+..-..+. +...+.. ....+...|.. ...+
T Consensus 284 ~~~df~--~~vDSIsvD~HK~l~-~P~~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~--~G~~ 358 (470)
T PLN02263 284 PKVTFK--KPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNR--KGYR 358 (470)
T ss_pred cccCCC--cCccEEEECCccccC-CCcCEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHH--hCHH
Confidence 111111 111223456789986 6678899888876554442211111 1111211 12223333432 1356
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCe-eeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC
Q 012095 356 VVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 434 (471)
Q Consensus 356 ~~~~~~~~~~~~r~~l~~~L~~~~g~~-~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f 434 (471)
.+.+..++.-++.+++.+.|++. |+. +..|.....+| ..|. ... ..+ |-.+..
T Consensus 359 G~~~~i~~~~~~A~~l~~~l~~~-g~~~~~~p~s~~V~f-~~p~--------------~~~-----~~~-gW~L~~---- 412 (470)
T PLN02263 359 GFQKEVQKCLRNAHYLKDRLREA-GISAMLNELSSTVVF-ERPK--------------DEE-----FVR-RWQLAC---- 412 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCeEEeCCCceEEEE-ecCc--------------hHH-----hhc-ceEEcc----
Confidence 78888888888999999999988 654 55666665443 3331 111 122 333333
Q ss_pred CCCCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 012095 435 GDDTCIRISYAA--SLTTLQAAVERIKKGLL 463 (471)
Q Consensus 435 ~~~~~iRis~~~--~~e~i~~~~~~l~~~l~ 463 (471)
.++.+++.+.. +.+.++++++.|++..+
T Consensus 413 -~~~~~Hivvmphv~~~~id~fi~DL~~~~~ 442 (470)
T PLN02263 413 -QGNIAHVVVMPSVTIEKLDYFLKELVEKRS 442 (470)
T ss_pred -CCCcEEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 12468888876 77999999999988765
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.8e-12 Score=134.93 Aligned_cols=346 Identities=14% Similarity=0.117 Sum_probs=204.8
Q ss_pred CeEEcCCCC--CCCC--ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHH
Q 012095 96 SVIRLAAGE--PDFD--TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 171 (471)
Q Consensus 96 ~~i~l~~g~--~~~~--~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~ 171 (471)
+.+|+..|. ..++ -.+++.+|+.+++.+-. ++....-..+-...+++.+.+..+.+ ..++++++++++++++.+
T Consensus 366 ~ylD~~sg~w~~~lG~h~~p~I~~Ai~~Qa~rl~-hv~~~~~~hepa~~LAe~L~~~~~~~-~l~rVffs~sGSeAvE~A 443 (817)
T PLN02974 366 QQFDACASWWTQGPDPTLQPELARAVAYAAGRYG-HVMFPENVHEPALRAAELLLGGPGKG-WASRVFFSDNGSTAIEVA 443 (817)
T ss_pred eEEEcchhHHHhCCCcCCCHHHHHHHHHHHhhCC-ccccCccCCHHHHHHHHHHHhccCCC-CCCEEEECCchHHHHHHH
Confidence 678887775 3344 27889999999887622 22222223566677777776522200 136899999999999988
Q ss_pred HHHhcC---------------------CCCeEEEcCCCCCChHHHHHHcCCE---------E------EEecCCC----C
Q 012095 172 VLAVCS---------------------PGDEVIIPAPFWVSYPEMARIADAT---------P------VILPTRI----S 211 (471)
Q Consensus 172 ~~~l~~---------------------~gd~Vlv~~p~y~~~~~~~~~~G~~---------~------~~v~~~~----~ 211 (471)
++...+ ....|+....+|++-...+-..+.. . ..++... .
T Consensus 444 lKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~ 523 (817)
T PLN02974 444 LKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRN 523 (817)
T ss_pred HHHHHHHHHHhcCCCcccccccccccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCcccccc
Confidence 876521 1235888888888744333222210 0 0111000 0
Q ss_pred --------CC-----------Cc-----CC------------HHHHHhhhcc--------CCcEEEEcCC--CCCcccC-
Q 012095 212 --------EN-----------FL-----LD------------PKVLESKLTE--------KSRLLILCSP--SNPTGSV- 244 (471)
Q Consensus 212 --------~~-----------~~-----ld------------~e~l~~~l~~--------~~~~i~i~~p--~NPtG~~- 244 (471)
.+ |. .+ .+.+++.+.. +..+|++ .| +.-.|..
T Consensus 524 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~-EPviqGaGGmi~ 602 (817)
T PLN02974 524 GRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALII-EPVLHGAGGMLL 602 (817)
T ss_pred ccccccCCccccccccccccccccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEE-eccccCCCCccc
Confidence 00 00 00 2446665531 3344444 44 5666764
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCc-cccccCCCCCCceEEEecCCcccCccc-hhheeeEcCHHHHH
Q 012095 245 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVA 322 (471)
Q Consensus 245 ~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~~~~~~~i~~~S~SK~~g~~G-~R~G~v~~~~~~i~ 322 (471)
.+++.+++|.++|++| |+++|.||++.+|.-.|... .....+.+ | +-+++|.++ .| +.+|.+++++++.+
T Consensus 603 ~~~~yl~~lr~lc~~~-gilLI~DEV~TGfGRtG~~fa~e~~gv~P--D----Ii~~gKgLt-gG~~Plaa~l~~~~I~~ 674 (817)
T PLN02974 603 IDPLFQRALVQVCRSR-KIPVIFDEVFTGLWRLGVESAWELLGCKP--D----IACYAKLLT-GGLVPLAATLATEEVFE 674 (817)
T ss_pred CCHHHHHHHHHHHHHh-CCEEEEeecccCCCcccchhhHHhcCCCC--C----EEeeccccc-CCCCccEEEEEcHHHHH
Confidence 5788999999999999 99999999999874433211 11111211 1 445889998 88 69999999999999
Q ss_pred HHHH------HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHH----HHhcCCCCCeeeCCCcceEE
Q 012095 323 ACNK------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV----KSFGELEGVKMSEPQGAFYL 392 (471)
Q Consensus 323 ~l~~------~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~----~~L~~~~g~~~~~p~~g~~~ 392 (471)
.+.. +....+++.++++.+++.+.|+.-.. ++....+.+.-++..+++. +.|.+.|.+.-+... |+++
T Consensus 675 ~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~-~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VRg~-Gl~~ 752 (817)
T PLN02974 675 AFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKD-PSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSL-GTVL 752 (817)
T ss_pred hhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEee-eeEE
Confidence 8852 12345778999999999888875211 2222333333333333333 334445444333333 4445
Q ss_pred eEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012095 393 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGL 462 (471)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l 462 (471)
-+.+.+..+ ..++ ...-...+.+.++.+.||++.|.. +.+|+.... +++++++++++|.+.|
T Consensus 753 ~iel~~~~~--~~~~-~~~~a~~v~~~~~~~~Gl~~r~~G-----nvi~l~pP~~i~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 753 ALELDAEGS--GSGY-SSLYARSVVRRLRREDGIYARPLG-----NVVYLMCGPTTSPETCTRLLRKVYRRL 816 (817)
T ss_pred EEEEecCCc--cccc-chHHHHHHHHHHHHhCCEEEEecC-----CEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 556643110 0111 001235677777724599998842 567875544 8999999999998765
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.6e-12 Score=124.70 Aligned_cols=323 Identities=14% Similarity=0.161 Sum_probs=210.4
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHc----C-----CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHH
Q 012095 97 VIRLAAGEPDFDTPVLIAEAGINAIRE----G-----FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (471)
Q Consensus 97 ~i~l~~g~~~~~~p~~v~~a~~~~~~~----~-----~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~a 167 (471)
++.|+.|-. ..|+.|++++.+.+.+ + ..+.+ .-..++.+.+.+.+.+.++++-+.+-++++.|++.+
T Consensus 8 ~~~f~pGP~--~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs--~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~ 83 (365)
T PLN02452 8 VFNFSAGPA--TLPANVLAKAQAELYNWEGSGMSVMEMSHRG--KEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQ 83 (365)
T ss_pred eEeeeCCCC--CCCHHHHHHHHHHHhcccccCccccccCCCc--hHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHH
Confidence 566655543 3478888888876532 1 12222 223567777777888888853222345566789999
Q ss_pred HHHHHHHhcCCCCeEEEcCCCCCCh--HHHHHHcCCEEEEecCCCCCCC--cCCHHHHHhhhccCCcEEEEcCCCCCccc
Q 012095 168 ILQAVLAVCSPGDEVIIPAPFWVSY--PEMARIADATPVILPTRISENF--LLDPKVLESKLTEKSRLLILCSPSNPTGS 243 (471)
Q Consensus 168 l~~~~~~l~~~gd~Vlv~~p~y~~~--~~~~~~~G~~~~~v~~~~~~~~--~ld~e~l~~~l~~~~~~i~i~~p~NPtG~ 243 (471)
+..++..++.+||.+++..-...+- .+.++.+|...+.... ++.+| .+++++++. .++.+.+.+++-.-.||+
T Consensus 84 ~ea~~~nl~~~~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~v~~~hnETstGv 160 (365)
T PLN02452 84 FAAIPLNLCKPGDKADFVVTGSWSKKAAKEAKKYCKTNVIASG-KDEKYTKIPSVSEWEL--TPDAKFVHICANETIHGV 160 (365)
T ss_pred HHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEec-CCCCCCCCCChHHcCC--CCCCcEEEECCCCCCCcE
Confidence 9999999999999887765544332 3567778864443321 12222 356666532 345677777776678999
Q ss_pred C-CCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHH
Q 012095 244 V-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA 322 (471)
Q Consensus 244 ~-~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~ 322 (471)
. .+ ++++. ++++|+|.+.... .....+.. ++ +.+.|.-|.+|.+| +|++++++++++
T Consensus 161 ~~~~---~~~i~-------~~~lvVDa~Ss~g----~~pidv~~----~~--v~~~saqK~lGP~G--l~~v~vr~~~l~ 218 (365)
T PLN02452 161 EFKD---YPDVG-------NVPLVADMSSNFL----SKPVDVSK----YG--VIYAGAQKNVGPSG--VTIVIIRKDLIG 218 (365)
T ss_pred ecCc---ccccC-------CCeEEEECCcccc----CcccCHHH----cC--EEEEecccccCCCC--eEEEEEcHHHHh
Confidence 6 44 43332 4788999887652 22222221 22 34468999999888 899999999887
Q ss_pred HHHHH------------HhcccCCCChHHHHHHHHHHhccCCChH-HHHHHHHHHHHHHHHHHHHhcCCCCCee--eCC-
Q 012095 323 ACNKI------------QSQFTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKM--SEP- 386 (471)
Q Consensus 323 ~l~~~------------~~~~~~~~~~~~q~aa~~~L~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~g~~~--~~p- 386 (471)
++... ...+..+|+....+++..+|+.- .++ .++.+.++++++.+++++.|++.+|+.. ..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l--~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~ 296 (365)
T PLN02452 219 NARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDL--LAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKS 296 (365)
T ss_pred hcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHH--HHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChH
Confidence 64321 11122467788888888888751 122 4889999999999999999998777611 111
Q ss_pred -CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 012095 387 -QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLL 463 (471)
Q Consensus 387 -~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~ 463 (471)
.+.+.+.+.+++. ....+|.+.+.+ .|+...+|..- -+.+|+|+-. +.++++.+++-++++-+
T Consensus 297 ~rs~~~vsF~~~~~-----------~~~~~f~~~~~~-~g~~~~~G~r~--~gg~R~s~yna~~~~~v~~L~~~m~~f~~ 362 (365)
T PLN02452 297 VRSLMNVPFTLGGS-----------ELEAEFVKEAAK-AGMVQLKGHRS--VGGMRASIYNAMPLAGVEKLVAFMKDFQA 362 (365)
T ss_pred HhCCeEEEEEcCCc-----------hhHHHHHHHHHH-CCCcccCCccc--cCceEEECcCCCCHHHHHHHHHHHHHHHH
Confidence 2455666777653 256778887655 59999998753 2239999876 88999999888888755
Q ss_pred h
Q 012095 464 T 464 (471)
Q Consensus 464 ~ 464 (471)
+
T Consensus 363 ~ 363 (365)
T PLN02452 363 K 363 (365)
T ss_pred h
Confidence 4
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-11 Score=136.32 Aligned_cols=325 Identities=17% Similarity=0.170 Sum_probs=205.9
Q ss_pred HHHHHHHHHHhcCCC-eEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCC-----CCCHHHHHHHHHHHHHHhCCCCCC
Q 012095 82 AITDQATALAQAGVS-VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPN-----AGTLELRSAICHKLKEENGLSYTP 155 (471)
Q Consensus 82 ~~~~~~~~~~~~g~~-~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~-----~G~~~lr~~ia~~~~~~~g~~~~~ 155 (471)
++....+++.++++. ...++.|.-+.-.|+.+.+.+.+.- ...+.|+|. +|..+..-.....+.+..|+ +.
T Consensus 62 e~~~~~~~la~~N~~~~~~ig~G~y~~~~P~vi~~~i~~~~-~~~t~ytPyQ~EisQG~Leal~~~Qt~la~LtG~--~~ 138 (954)
T PRK05367 62 EALAELRAIASKNKVFRSYIGQGYYGTHTPPVILRNILENP-AWYTAYTPYQPEISQGRLEALLNFQTMVADLTGL--EI 138 (954)
T ss_pred HHHHHHHHHHhcCCCCCcccCCCCCCCcCcHHHHHHHHhCc-chhhccCCCChHHHHHHHHHHHHHHHHHHHHHCC--Ch
Confidence 333444444444432 1335666655555766655554421 124667764 56655555555556666674 67
Q ss_pred CcEEEeCChHHHHHHHHHHh-cCC--CCeEEEcCCCCCChHHH----HHHcCCEEEEecCCCCCCCcCCHHHHHhhhccC
Q 012095 156 DQILVSNGAKQSILQAVLAV-CSP--GDEVIIPAPFWVSYPEM----ARIADATPVILPTRISENFLLDPKVLESKLTEK 228 (471)
Q Consensus 156 ~~i~it~G~~~al~~~~~~l-~~~--gd~Vlv~~p~y~~~~~~----~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~ 228 (471)
.|+.+..+++++.+.+++++ ..+ +|+|++++-.|+.+... ++..|.+++.++.+. + ++ .++
T Consensus 139 anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~--d--~~--------~~~ 206 (954)
T PRK05367 139 ANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAK--A--LD--------HDD 206 (954)
T ss_pred hhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCcc--C--CC--------ccc
Confidence 89999999999999888776 344 48999999999988764 456899999998743 1 11 224
Q ss_pred CcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcc-----
Q 012095 229 SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA----- 303 (471)
Q Consensus 229 ~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~----- 303 (471)
+.++++.+| |-+|.+.+ +++|+++|+++ |+++++|-....+.. ...++..+-.|+++|..|.
T Consensus 207 ~~~vlvq~p-~~~G~i~d---~~~i~~~ah~~-Gal~~vda~~~Al~~--------l~~pge~GaDi~vgs~qkfg~P~g 273 (954)
T PRK05367 207 VFGVLLQYP-GTSGEVRD---YTALIAAAHAR-GALVAVAADLLALTL--------LTPPGEMGADIAVGSAQRFGVPMG 273 (954)
T ss_pred EEEEEEecC-CCCeeecc---HHHHHHHHHHc-CCEEEEEehhhhccC--------CCChhhcCCCEEEeeCcccCCCCC
Confidence 445556666 45999998 99999999999 999999864422211 1112334556889988887
Q ss_pred cCccchhheeeEcCHHHHHHHH-HHH-------------------------hcccCCCChH-HHHHHHHH--HhccCCCh
Q 012095 304 FAMTGWRLGYIAGPKHFVAACN-KIQ-------------------------SQFTSGASSI-SQKAGVAA--LGLGYAGG 354 (471)
Q Consensus 304 ~g~~G~R~G~v~~~~~~i~~l~-~~~-------------------------~~~~~~~~~~-~q~aa~~~--L~~~~~~~ 354 (471)
||-| -.|++.+.+++.+.+. ++. ...+++..+. +..++.+. +.. ...
T Consensus 274 ~GGP--~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~--~g~ 349 (954)
T PRK05367 274 FGGP--HAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVY--HGP 349 (954)
T ss_pred CCCC--CEEEEEECHHHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHH--Hhh
Confidence 4434 4899999888777652 000 0011111111 01111111 111 024
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEE--eEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC
Q 012095 355 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYL--FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD 432 (471)
Q Consensus 355 ~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~ 432 (471)
..++++.++...+..++.+.|.+. |+++..+ .+|- .++++ .+..++.++|+++ ||.+..-
T Consensus 350 ~Gl~~Ia~~~~~la~~l~~~L~~~-G~~~~~~--~~f~~~~~~~~-------------~~~~~i~~~l~~~-gi~~~~~- 411 (954)
T PRK05367 350 EGLKAIARRVHRLAAILAAGLRAL-GLEVVHD--SFFDTLTVEVG-------------GDAAAVLARALAA-GINLRRV- 411 (954)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhc-CcccCCC--CCCCeEEEeCC-------------CCHHHHHHHHHHC-Cceeccc-
Confidence 567888888889999999999774 8776533 2332 23332 1678899998876 8887321
Q ss_pred CCCCCCcEEEEeec--CHHHHHHHHHHHH
Q 012095 433 AFGDDTCIRISYAA--SLTTLQAAVERIK 459 (471)
Q Consensus 433 ~f~~~~~iRis~~~--~~e~i~~~~~~l~ 459 (471)
.++.+|+|+.. ++++|+.+++.|.
T Consensus 412 ---~~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 412 ---DDDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred ---cCCEEEEEecccCCHHHHHHHHHHHc
Confidence 25679999987 8899999999996
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.5e-12 Score=119.57 Aligned_cols=342 Identities=14% Similarity=0.138 Sum_probs=210.3
Q ss_pred hcCCCeEEcCCCCCC--CCC-hHHHHHHHHHHHHcC---CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChH
Q 012095 92 QAGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165 (471)
Q Consensus 92 ~~g~~~i~l~~g~~~--~~~-p~~v~~a~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~ 165 (471)
+.|+.++|+-.|... ++. +|.+.+++.+++..- ...|. ..-..++-+.+.+.+- -+-..++++|+++
T Consensus 47 e~G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~l~H~t~~~~-~~pi~~~Ae~L~s~~P------~~l~~vfF~nsGs 119 (442)
T KOG1404|consen 47 EEGRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKKLYHTTSGYL-NPPIHDLAEALVSKLP------GDLKVVFFVNSGS 119 (442)
T ss_pred CCCceeehhhCCeEEEEcCCCChHHHHHHHHhhhhhEEeecccc-CCcHHHHHHHHHHhCC------CCceEEEEecCCc
Confidence 367788888888743 333 688999999887542 23453 3334666666666641 1335789999999
Q ss_pred HHHHHHHHHhc-CCC-CeEEEcCCCCCChH-HHHHHcCCEEEEecCCCC--------------CCCcCC---------HH
Q 012095 166 QSILQAVLAVC-SPG-DEVIIPAPFWVSYP-EMARIADATPVILPTRIS--------------ENFLLD---------PK 219 (471)
Q Consensus 166 ~al~~~~~~l~-~~g-d~Vlv~~p~y~~~~-~~~~~~G~~~~~v~~~~~--------------~~~~ld---------~e 219 (471)
+|.+++++... -.| -.++.-..+|.+.. ..+.+-|......+.+.. .-|+=+ .+
T Consensus 120 EANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~ 199 (442)
T KOG1404|consen 120 EANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAK 199 (442)
T ss_pred hHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHH
Confidence 99998877642 122 24555555665544 333333443333222110 001101 13
Q ss_pred HHHhhhc---cCCcEEEE-cCCCCCcc-cCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCce
Q 012095 220 VLESKLT---EKSRLLIL-CSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 294 (471)
Q Consensus 220 ~l~~~l~---~~~~~i~i-~~p~NPtG-~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~ 294 (471)
++++.+. +.+-+-+| .+.+--.| +.+++..+++..++|+++ |.+.|.||+...|-..| .++.+.. .+-+
T Consensus 200 ~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~-Ggl~IaDEVqtGfGRtG----~~wgfe~-h~v~ 273 (442)
T KOG1404|consen 200 ELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKR-GGLFIADEVQTGFGRTG----HMWGFES-HGVV 273 (442)
T ss_pred HHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHc-CCEEEehhhhhcccccc----ccccccc-cCCC
Confidence 4444442 23334444 44455556 467788999999999999 99999999999874443 4555432 3555
Q ss_pred EEEecCCcccCccchhheeeEcCHHHHHHHHHHH-hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHH
Q 012095 295 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 373 (471)
Q Consensus 295 i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~-~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~ 373 (471)
--+-|++|.+| .|+.+|.++..+++.+-+.+.. ..++++.++++.+++.+.|+-- .-+++.+.-++.-.+|.+
T Consensus 274 PDIvTmAKgiG-nG~Pl~AVvtt~EIa~v~~~~~~~fnTyggnP~a~avg~aVL~Vi-----kee~LqE~aa~vG~yl~~ 347 (442)
T KOG1404|consen 274 PDIVTMAKGIG-NGFPLGAVVTTPEIADVLNQKSSHFNTYGGNPVACAVGLAVLKVI-----KEENLQENAAEVGSYLLE 347 (442)
T ss_pred ccHHHHHhhcc-CCCcceeeecCHHHHHHHHhccccccccCCCchhHHHHHHHHHHH-----HHHhHHHHHHHHHHHHHH
Confidence 56889999999 9999999999999999988765 6678889999999999888741 123334444445555555
Q ss_pred HhcCC-CCCeeeC--CCcceEEeEecCCccCCcccCCCC-CCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--C
Q 012095 374 SFGEL-EGVKMSE--PQGAFYLFIDFSTYYGSEAEGFGK-IENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--S 447 (471)
Q Consensus 374 ~L~~~-~g~~~~~--p~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~ 447 (471)
.|.++ .+.+++. -.-|.++-+.+-+.. .+.+.. ......+.+.+.+ .||.+.-|..+|. .+||+... |
T Consensus 348 ~l~~l~d~h~iIGdVRG~GLm~GvE~V~dk---~~~~pp~~~~~~~i~~~cke-~Gvlvg~g~i~G~--vfriaPPlciT 421 (442)
T KOG1404|consen 348 KLAALKDKHPIIGDVRGRGLMLGVELVSDK---SEPKPPATAEGAVIGEQCKE-LGVLVGKGGIHGN--VFRIAPPLCIT 421 (442)
T ss_pred HHHHHhhcCCceeecccceeEEEEEEeccc---CCCCCcchHHHHHHHHHHHH-hCeeeecccccce--EEEecCCeecc
Confidence 55543 1222221 123454545443221 001000 0123455677665 5999988887765 89998764 9
Q ss_pred HHHHHHHHHHH
Q 012095 448 LTTLQAAVERI 458 (471)
Q Consensus 448 ~e~i~~~~~~l 458 (471)
.||++.+++..
T Consensus 422 ~edi~f~~~~~ 432 (442)
T KOG1404|consen 422 KEDIDFAVEYF 432 (442)
T ss_pred HHHHHHHHHHH
Confidence 99997766644
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-11 Score=130.22 Aligned_cols=153 Identities=14% Similarity=0.149 Sum_probs=110.0
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCc----CCH-----HHHHhh
Q 012095 154 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL----LDP-----KVLESK 224 (471)
Q Consensus 154 ~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~----ld~-----e~l~~~ 224 (471)
.....+++||+|.++..++.+++.+||.||++..+|-+..+.+.+.|+++++++... +.|+ ++. +.++++
T Consensus 210 Ad~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~aLilsga~PVYl~P~~-n~~Gi~g~I~~~~~~~e~I~~~ 288 (713)
T PRK15399 210 AEQSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHLLMMSDVVPIWLKPTR-NALGILGGIPRREFTRDSIEEK 288 (713)
T ss_pred CCcEEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeeEEecccc-cccCCcCCCChhhccHHHHHHH
Confidence 446789999999999999999999999999999999999999999999999997543 2333 345 888888
Q ss_pred hcc-----CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCcc-ccCCCCc-cccccC-CCCCCceEE
Q 012095 225 LTE-----KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI-IYAPATH-TSFASL-PGMWERTLT 296 (471)
Q Consensus 225 l~~-----~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~-~~~~~~~-~~~~~~-~~~~~~~i~ 296 (471)
+.+ ++++++|++|+. -|.+++ +++|.++| . --+|++||||+.. .|.+... .+.... .+.+-.+++
T Consensus 289 i~~~p~~~~p~~vvit~pTY-dGi~yd---~~~I~~~~--g-~~~ilvDEAhgah~~F~p~~~~~sam~~~~~aD~~i~~ 361 (713)
T PRK15399 289 VAATTQAQWPVHAVITNSTY-DGLLYN---TDWIKQTL--D-VPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVIFE 361 (713)
T ss_pred HHhCCCcCCceEEEEECCCC-CceeeC---HHHHHHHh--C-CCEEEEeccchhhhhcCcccCCcChhhCCCCCCeeeee
Confidence 853 346888999965 899999 77777777 2 2245699999853 3433111 111111 122234566
Q ss_pred EecCCcccCccchhhe-eeEc
Q 012095 297 VNGFSKAFAMTGWRLG-YIAG 316 (471)
Q Consensus 297 ~~S~SK~~g~~G~R~G-~v~~ 316 (471)
+.|..|.+ +|+.-+ ++..
T Consensus 362 tQStHKtL--~alTQaS~iHv 380 (713)
T PRK15399 362 TQSTHKML--AAFSQASLIHI 380 (713)
T ss_pred eeehhccc--cccchheeeee
Confidence 99999997 455544 4444
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-11 Score=133.83 Aligned_cols=330 Identities=13% Similarity=0.174 Sum_probs=198.9
Q ss_pred HHHHHHHHHHhcCCCe-EEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCC-----CCCHHHHHHHHHHHHHHhCCCCCC
Q 012095 82 AITDQATALAQAGVSV-IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPN-----AGTLELRSAICHKLKEENGLSYTP 155 (471)
Q Consensus 82 ~~~~~~~~~~~~g~~~-i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~-----~G~~~lr~~ia~~~~~~~g~~~~~ 155 (471)
++....+++..+++.. -.++.|.-+.-.|+.+.+++.+...- .+.|+|. +|..+........+.+..| .++
T Consensus 89 e~~~~~~~la~kN~~~~~fiG~G~y~~~~P~~v~~~i~~~~~~-~TaytPYqaEisQG~lqal~~~Qt~ia~LtG--~~~ 165 (993)
T PLN02414 89 QMLEHMKSLASKNKVFKSYIGMGYYNTHVPPVILRNILENPGW-YTQYTPYQAEIAQGRLESLLNYQTMITDLTG--LPM 165 (993)
T ss_pred HHHHHHHHHHhcCCccccccCCCCCCccCCHHHHHHHHhChHH-HhhcCCCchHHHHHHHHHHHHHHHHHHHHhC--CCh
Confidence 3334444444443322 22344554445577777777654321 2445443 4544433444444444456 478
Q ss_pred CcEEEeCChHHHHHHHHHHh-cCCC--CeEEEcCCCCCChHHHH----HHcCCEEEEecCCCCCCCcCCHHHHHhhhccC
Q 012095 156 DQILVSNGAKQSILQAVLAV-CSPG--DEVIIPAPFWVSYPEMA----RIADATPVILPTRISENFLLDPKVLESKLTEK 228 (471)
Q Consensus 156 ~~i~it~G~~~al~~~~~~l-~~~g--d~Vlv~~p~y~~~~~~~----~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~ 228 (471)
+|+.++.|++++...+++++ +.+| |+|++++-.|+.+...+ +..|++++.++.+.. + ...+.
T Consensus 166 anaSL~d~aTAaaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~-----~------~~~~~ 234 (993)
T PLN02414 166 SNASLLDEGTAAAEAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDF-----D------YSSGD 234 (993)
T ss_pred hhEeecCChHHHHHHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhh-----c------cccCc
Confidence 89999999999999887776 3544 78999999999987655 446999999986421 1 11122
Q ss_pred CcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCccc---C
Q 012095 229 SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF---A 305 (471)
Q Consensus 229 ~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~---g 305 (471)
.-.+++.+|++ +|.+.+ +++|+++|+++ ++++++ .+... ... .+.. ++..+-.|++++..|.. |
T Consensus 235 v~~vlvq~P~~-~G~v~d---v~~I~~~ah~~-GaL~iV-aad~l-al~-----~l~~-pge~GADi~vgsgqKwg~P~G 301 (993)
T PLN02414 235 VCGVLVQYPAT-DGEVLD---YAEFVKNAHAN-GVKVVM-ATDLL-ALT-----MLKP-PGEWGADIVVGSAQRFGVPMG 301 (993)
T ss_pred eEEEEEecCCC-CeEEcC---HHHHHHHHHHc-CCEEEE-EECHH-Hhc-----CCCC-HhhccCcEEEECCCccccCCC
Confidence 33344444443 999998 99999999999 899988 33321 111 1111 22245558889888876 2
Q ss_pred ccchhheeeEcCHHHHHHHH-HHHhc-----------------------ccCCCChHHHHHHHHHHhc---cCCChHHHH
Q 012095 306 MTGWRLGYIAGPKHFVAACN-KIQSQ-----------------------FTSGASSISQKAGVAALGL---GYAGGEVVS 358 (471)
Q Consensus 306 ~~G~R~G~v~~~~~~i~~l~-~~~~~-----------------------~~~~~~~~~q~aa~~~L~~---~~~~~~~~~ 358 (471)
..|-+.|++++.+++.+.+- ++... -..+.|.-+..+..+.+.. .......++
T Consensus 302 ~GGP~aGflavr~~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~ 381 (993)
T PLN02414 302 YGGPHAAFLATSQEYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLK 381 (993)
T ss_pred CCCCCeeEEEECHHHHhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHH
Confidence 24556899999887766442 11000 0011222122222222211 000134477
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceE--EeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC
Q 012095 359 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY--LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD 436 (471)
Q Consensus 359 ~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~ 436 (471)
++.++..++..++.+.|.+. |+++..+ .|| +.++++ +..++.++|.++ ||.+....
T Consensus 382 ~Ia~ri~~la~~l~~~L~~~-G~~~~~~--~~f~~vt~~~~--------------~~~~v~~~L~~~-gI~l~~~~---- 439 (993)
T PLN02414 382 TIAQRVHGLAGVFAAGLKKL-GFQVQSL--PFFDTVKVKCS--------------DADAIADAAAKV-GINLRVVD---- 439 (993)
T ss_pred HHHHHHHHHHHHHHHHHhhc-CCccCCC--CCcCeEEEecC--------------CHHHHHHHHHHC-CCeeEEec----
Confidence 77888888999999999775 7776433 333 233333 457888888776 88665422
Q ss_pred CCcEEEEeec--CHHHHHHHHHHHHH
Q 012095 437 DTCIRISYAA--SLTTLQAAVERIKK 460 (471)
Q Consensus 437 ~~~iRis~~~--~~e~i~~~~~~l~~ 460 (471)
++.+|+|+.. +++||+.+++.|..
T Consensus 440 ~~~lrvs~~e~~T~edId~L~~~l~~ 465 (993)
T PLN02414 440 ANTVTVSFDETTTLEDVDKLFKVFAG 465 (993)
T ss_pred CCeEEEEeeccCCHHHHHHHHHHHcc
Confidence 4579999987 88999999999863
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-11 Score=115.28 Aligned_cols=333 Identities=15% Similarity=0.181 Sum_probs=213.2
Q ss_pred cCCCeEEcCCCCCCCC---ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGEPDFD---TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~~~~~---~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+..+||-.+..... -++.++++++++.+.-. -+...-+..+-...++++.+.+|. +.++.++-+.|+..
T Consensus 57 eGk~ylDflsaysaVnqGhchpki~~aLqeq~~kLt--lssrafYnd~~~~f~~~vt~lf~~----~kvlpmnTGaEa~E 130 (427)
T KOG1402|consen 57 EGKEYLDFLSAYSAVNQGHCHPKIIKALQEQADKLT--LSSRAFYNDVLGEFAEYVTKLFGY----DKVLPMNTGAEAVE 130 (427)
T ss_pred CccchhhhhhhhhhcccCCCCHHHHHHHHHHHhHhh--hhhHHHhhhhHHHHHHHHHHhcCc----ceeeecccchhHHH
Confidence 5677777766664332 27889999998876411 111122345556666677666653 56777777788888
Q ss_pred HHHHHhc------C--CCC--eEEEcCCCCCChHHHHHHcCCE--------------EEEecCCCCCCCcCCHHHHHhhh
Q 012095 170 QAVLAVC------S--PGD--EVIIPAPFWVSYPEMARIADAT--------------PVILPTRISENFLLDPKVLESKL 225 (471)
Q Consensus 170 ~~~~~l~------~--~gd--~Vlv~~p~y~~~~~~~~~~G~~--------------~~~v~~~~~~~~~ld~e~l~~~l 225 (471)
.++...- + |.| .|+....+|++-.-.+-.++.+ +..||+ + |.++|+.++
T Consensus 131 ta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y------~-d~eale~~l 203 (427)
T KOG1402|consen 131 TACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPY------G-DAEALEVAL 203 (427)
T ss_pred HHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeecc------C-CHHHHHHHh
Confidence 7776542 1 322 3555555555422111111111 122221 1 899999999
Q ss_pred ccCCcEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcc
Q 012095 226 TEKSRLLILCSP-SNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 303 (471)
Q Consensus 226 ~~~~~~i~i~~p-~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 303 (471)
+++.-+-++..| +--.|+ +.++..+++..++|.+| ++++|.||++.++...|.-. ......-... +++ |.|.
T Consensus 204 ~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtky-nvl~I~DEvQTGl~RTGk~l--a~d~env~PD-ivi--lgKa 277 (427)
T KOG1402|consen 204 KSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKY-NVLLIADEVQTGLARTGKLL--ACDYENVRPD-IVI--LGKA 277 (427)
T ss_pred cCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhh-cEEEEehhhhhcccccCcEE--EeehhhcCCC-eEE--Eecc
Confidence 764444455555 767775 55667899999999999 99999999999876554311 1111111111 333 5699
Q ss_pred cCccc-hhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCC---
Q 012095 304 FAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE--- 379 (471)
Q Consensus 304 ~g~~G-~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~--- 379 (471)
++ .| +.+..++++++++..+..-....+++.|+++.+++.++|+. -.-+.+.++-++.-+.|++.|.+++
T Consensus 278 lS-GG~~Pvsavl~~~~im~~~~pgeHgsTyggNpLg~~vaiAalev-----i~eekL~era~~lG~~l~~~L~~l~~~~ 351 (427)
T KOG1402|consen 278 LS-GGVYPVSAVLADDDIMLNIKPGEHGSTYGGNPLGCAVAIAALEV-----IVEEKLVERAAKLGEILRDQLNKLQKKF 351 (427)
T ss_pred cc-CCeeeeEEEEecHHHHhccCCCccccccCCChHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 86 55 56778889999998887766777889999999999999974 2235566667777777888887763
Q ss_pred -CC-eeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHH
Q 012095 380 -GV-KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAV 455 (471)
Q Consensus 380 -g~-~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~ 455 (471)
++ +.+. .-|++.-+.+... ... ..++.++|-.|. +.|++.-|-. .+-||++... +++++++++
T Consensus 352 p~~v~~VR-GrGl~~ai~i~~~---~~~----~~~aw~~cl~lk-~~g~LAkptH----~~IiRfaPPL~I~e~dl~eg~ 418 (427)
T KOG1402|consen 352 PHVVKEVR-GRGLLNAIVINPS---KTS----GQDAWDVCLALK-ENGLLAKPTH----GNIIRFAPPLVISEEDLREGI 418 (427)
T ss_pred cchhheee-ccceEEEEEeccc---ccc----chhHHHHHHccc-ccccccCCCC----CCeEEecCCcccCHHHHHHHH
Confidence 32 3333 3356555555421 011 126777887655 4588877744 4589999776 999999999
Q ss_pred HHHHHHHH
Q 012095 456 ERIKKGLL 463 (471)
Q Consensus 456 ~~l~~~l~ 463 (471)
+.|.+.+.
T Consensus 419 e~i~k~i~ 426 (427)
T KOG1402|consen 419 EAIEKTIA 426 (427)
T ss_pred HHHHHHhc
Confidence 99998764
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.5e-11 Score=120.01 Aligned_cols=236 Identities=19% Similarity=0.168 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCC-
Q 012095 135 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN- 213 (471)
Q Consensus 135 ~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~- 213 (471)
.+..+..|+. +| ....-+++||++.++..++.+++.+||.||++.++|-+....+-++|+.++++....+..
T Consensus 73 ~eAqe~aA~~----fg---Ad~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~~np~~ 145 (557)
T COG1982 73 KEAQELAARV----FG---ADHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGLILAGATPVYLEPSRNPLY 145 (557)
T ss_pred HHHHHHHHHH----hC---CCceEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHHHHHcCCceEEecCCCCccc
Confidence 3444444444 44 445789999999999999999999999999999999999999999999999987655442
Q ss_pred ---CcCCHHHHHhhhcc--CC-cEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccC
Q 012095 214 ---FLLDPKVLESKLTE--KS-RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL 287 (471)
Q Consensus 214 ---~~ld~e~l~~~l~~--~~-~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~ 287 (471)
.+++.+.+++++.+ .. |+++|.+|+. .|.+++ +++|.+.+... ++|+.+||++....--....+ ..
T Consensus 146 gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTY-dGv~~n---~~~i~~~~~~~-~a~v~~deah~~~~~~~~~l~---~~ 217 (557)
T COG1982 146 GIIGGIPLETFKEALLAHPDAEKLAVITNPTY-DGVCYN---LRKIVELLHHY-GAWVLYDEAHPAHFDFSPMLP---ES 217 (557)
T ss_pred cccCCCCHHHHHHHHHhChhhheeEEEecCcc-ceEeec---HHHHHHHHhhc-CceEEhhhcCcccccccccCc---ch
Confidence 35799999988743 34 7888888877 799999 88999999999 999999999875321111111 11
Q ss_pred CCCCCceEEEecCCcccCccchhhe-eeEcCH--H-HHHHHHHHHhcccCCCChHHHHHHHHHHh--ccCCChHHHHHHH
Q 012095 288 PGMWERTLTVNGFSKAFAMTGWRLG-YIAGPK--H-FVAACNKIQSQFTSGASSISQKAGVAALG--LGYAGGEVVSKMV 361 (471)
Q Consensus 288 ~~~~~~~i~~~S~SK~~g~~G~R~G-~v~~~~--~-~i~~l~~~~~~~~~~~~~~~q~aa~~~L~--~~~~~~~~~~~~~ 361 (471)
......++++.|..|.++ ++..+ ++.... . -.+++........++.+.....|...+-+ .+.......++..
T Consensus 218 ~~~~~~~~~tqS~HK~l~--alSQaS~iHv~~~~~~~~~r~nea~~~h~STSPsY~l~ASlD~Ar~~~~~~G~~l~~~~~ 295 (557)
T COG1982 218 ALNGGADFVTQSTHKLLA--ALSQASMIHVKDGRAVNHERFNEALMMHQSTSPSYPLMASLDVARMQEGNAGRELWQEVI 295 (557)
T ss_pred hhhcCceEEEechhhhhh--hhhhhHHHhhCCCccCCHHHHHHHHHHHccCCchHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 112567899999999984 44544 444442 1 12333333222222222222222222111 1111122233334
Q ss_pred HHHHHHHHHHHHHhcCCCCCeeeCCC
Q 012095 362 KAFRERRDFLVKSFGELEGVKMSEPQ 387 (471)
Q Consensus 362 ~~~~~~r~~l~~~L~~~~g~~~~~p~ 387 (471)
+..-+.|+.+.+.+.+++++.++.|.
T Consensus 296 ~~~i~~r~~~~~~~~~~~~~~~~~~~ 321 (557)
T COG1982 296 DEAIDFRKALRRLINEIGFFPVLQPE 321 (557)
T ss_pred HHHHHHHHHHHHHHHhcCCeeecccc
Confidence 44455566666666666555554443
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-12 Score=130.05 Aligned_cols=239 Identities=17% Similarity=0.180 Sum_probs=156.4
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.++|+..|. ..++- +|.+.+++.+++......+ ......+....+++.+.+..+. ..++++++++++++++
T Consensus 14 dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~-~~~~~~~~~~~la~~L~~~~p~--~~~~v~f~~sGseAve 90 (339)
T PF00202_consen 14 DGREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVS-FSGFTHPEAAELAEKLAELFPG--GLDRVFFANSGSEAVE 90 (339)
T ss_dssp TSEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCS-TTTSEEHHHHHHHHHHHHHSST--TEEEEEEESSHHHHHH
T ss_pred CCCEEEECCCCccceecCCCccccchhHHHHhhhccccc-ccceeccchhhhhhhhhhcccc--ccceeeeccCchHHHH
Confidence 577899998775 44443 6889999999887643222 2344566777888888776642 4469999999999999
Q ss_pred HHHHHhc-------CCC-CeEEEcCCCCCChHHHHHHcC-------------CEEEEecCCCCCCCcCCHHH--------
Q 012095 170 QAVLAVC-------SPG-DEVIIPAPFWVSYPEMARIAD-------------ATPVILPTRISENFLLDPKV-------- 220 (471)
Q Consensus 170 ~~~~~l~-------~~g-d~Vlv~~p~y~~~~~~~~~~G-------------~~~~~v~~~~~~~~~ld~e~-------- 220 (471)
.+++... .++ ..|+....+|++....+...+ ..+..+|.+ ++..
T Consensus 91 ~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~~~~~~~ 163 (339)
T PF00202_consen 91 AALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFP-------DPAADEEEQACL 163 (339)
T ss_dssp HHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETT-------CHHHHHHHHHHH
T ss_pred HHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCC-------ccchhhhHHHHH
Confidence 9998765 233 688888988887553322211 123445543 3222
Q ss_pred --HHhhh----ccCCcEEEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCc-cccccCCCCCC
Q 012095 221 --LESKL----TEKSRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWE 292 (471)
Q Consensus 221 --l~~~l----~~~~~~i~i~~p~NPtG-~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~~~~~ 292 (471)
+++.+ .++..+|++...+.-.| ...+++.+++|.++|++| |+++|.||++..+...|... .....+.+ |
T Consensus 164 ~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~-gillI~DEV~tG~gRtG~~~a~~~~gv~P--D 240 (339)
T PF00202_consen 164 NALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREH-GILLIADEVQTGFGRTGKFFASEHYGVDP--D 240 (339)
T ss_dssp HHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHT-T-EEEEEETTTTTTTTSSSSGHHHHTSSS--S
T ss_pred HHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehccccccc-ccceecccccccccccCCccceecccccC--c
Confidence 22222 23444555543344455 466788999999999999 99999999999874333211 11122222 2
Q ss_pred ceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhc
Q 012095 293 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL 349 (471)
Q Consensus 293 ~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~ 349 (471)
|+ +|+|.++ .|+.+|.+++++++.+.+.......+++.++++..++.+.|+.
T Consensus 241 --iv--~~gK~l~-gG~p~sav~~~~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~ 292 (339)
T PF00202_consen 241 --IV--TFGKGLG-GGLPISAVLGSEEIMEAFQPGSHGSTFGGNPLSCAAALATLEI 292 (339)
T ss_dssp --EE--EEEGGGG-TTSSEEEEEEEHHHHTTSCTTSSTCTTTT-HHHHHHHHHHHHH
T ss_pred --cc--ccccchh-hhhhcccccccchhhccccccccccccccchHhhhhhhhHHHh
Confidence 33 3679998 7899999999999998775544556777889999998888874
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-10 Score=107.58 Aligned_cols=328 Identities=16% Similarity=0.186 Sum_probs=213.8
Q ss_pred cCCCeEEcCCCCCCCCChHHHHHHHHHHH---HcC----CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChH
Q 012095 93 AGVSVIRLAAGEPDFDTPVLIAEAGINAI---REG----FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165 (471)
Q Consensus 93 ~g~~~i~l~~g~~~~~~p~~v~~a~~~~~---~~~----~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~ 165 (471)
...++|.|..|....-++....+..+.+. .++ +++ ....-.++-+.+.+++.-.-| ..+.+++++.+++
T Consensus 28 lp~~viyLdgnSLGa~p~~~~a~~~q~a~deW~~~lirsw~~--a~~~W~~lp~~lgdklApLiG--A~~~Evvv~dtts 103 (407)
T COG3844 28 LPGGVIYLDGNSLGARPRAVTARLQQVATDEWGEGLIRSWNK--AKADWFDLPERLGDKLAPLIG--ARAGEVVVTDTTS 103 (407)
T ss_pred CCCCeEEeeccccccCchHHHHHHHHHHHHHHHhhhhhhhcc--cCCchhhchhHHHHHhhhhhc--CCCCceEEeCCcc
Confidence 34579999999877665444433333333 221 121 123345566677777766666 4678999999999
Q ss_pred HHHHHHHHHhcC--CCCeEEEcCC-CCCChH----HHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCC
Q 012095 166 QSILQAVLAVCS--PGDEVIIPAP-FWVSYP----EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 238 (471)
Q Consensus 166 ~al~~~~~~l~~--~gd~Vlv~~p-~y~~~~----~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~ 238 (471)
-.++.++.+.++ +|+.|++++- +|++-. ..++..|.. +.+ ...+.++++++++++++.++++++.+
T Consensus 104 ~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~---~~~----~~~~~P~~~~~~~~dd~AvV~L~~V~ 176 (407)
T COG3844 104 INLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIG---YDL----EGVIAPRALEEAITDDVAVVLLSHVN 176 (407)
T ss_pred hHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhccc---ccc----eeeeChHHHHHhhccceEEEEecccc
Confidence 999988888764 5888888764 454422 344454433 111 12357889999999999999999999
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccC-ccchhheeeEcC
Q 012095 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGP 317 (471)
Q Consensus 239 NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~R~G~v~~~ 317 (471)
.-||..++ +.+|-+++++| +++++-|-+|+...+ .. .+. ..+-.+-+++-.|.++ =||- .+++...
T Consensus 177 y~TGql~d---m~aiT~~AH~~-galv~wDLAHsaGav----p~---~Lh-~~gaDfaigcsyKYLNgGPGa-pa~l~v~ 243 (407)
T COG3844 177 YKTGQLLD---MRAITALAHQH-GALVGWDLAHSAGAV----PV---DLH-AAGADFAIGCSYKYLNGGPGA-PAGLFVA 243 (407)
T ss_pred ccccceee---HHHHHHHHHhc-CceEEeehhcccCCc----ce---eec-ccCCCeeeeeeceeccCCCCC-ceeEEec
Confidence 99999999 89999999999 899999999986322 11 111 1344466777778773 2443 2333333
Q ss_pred HHHHHHH-----------------------HHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHH
Q 012095 318 KHFVAAC-----------------------NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 374 (471)
Q Consensus 318 ~~~i~~l-----------------------~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~ 374 (471)
+...+.. ..+.+.....++.++..+...+|+.. ..--+.+++++--...+++.+.
T Consensus 244 ~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDif--a~~~i~~lR~kSlaLTd~fieL 321 (407)
T COG3844 244 PRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIF--ADVDITELRKKSLALTDYFIEL 321 (407)
T ss_pred cccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhh--hhcCHHHHHHhhhHHHHHHHHH
Confidence 2222211 11122223345555555555566542 1222677777777788888887
Q ss_pred hcCC-C--CCeeeCCCc----ceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec-
Q 012095 375 FGEL-E--GVKMSEPQG----AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA- 446 (471)
Q Consensus 375 L~~~-~--g~~~~~p~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~- 446 (471)
++.. + ++++..|.. |-.+.+..| ...++.+.|.++ ||. ..|..++-+|+.+..
T Consensus 322 vEa~~~~~~l~l~tPr~~~~rGsqvS~~hp--------------~~~~V~qaLi~r-GVi----gD~R~P~vlRfgftPl 382 (407)
T COG3844 322 VEARCEYYGLTLVTPRAHEERGSQVSLYHP--------------HGYQVMQALIDR-GVI----GDFREPDVLRFGFTPL 382 (407)
T ss_pred HHhccccCCcEEeccchhhhccceeeEecC--------------cHHHHHHHHHHc-Ccc----ccccCCCeeeecCccc
Confidence 7753 3 566655532 223444554 567899999887 886 357778999999986
Q ss_pred --CHHHHHHHHHHHHHHHHhh
Q 012095 447 --SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 447 --~~e~i~~~~~~l~~~l~~~ 465 (471)
+-+|+-.+++.|.+++++.
T Consensus 383 Y~~~~DVw~AV~~L~evL~t~ 403 (407)
T COG3844 383 YVSFVDVWDAVDALEEVLDTL 403 (407)
T ss_pred eechhHHHHHHHHHHHHHHhh
Confidence 7799999999999999764
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-10 Score=109.96 Aligned_cols=357 Identities=17% Similarity=0.205 Sum_probs=226.7
Q ss_pred HHHHHHhcCCCeEEcCCCCCCCC--C---hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEE
Q 012095 86 QATALAQAGVSVIRLAAGEPDFD--T---PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILV 160 (471)
Q Consensus 86 ~~~~~~~~g~~~i~l~~g~~~~~--~---p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~i 160 (471)
+...+++.|.+..-|.+++-... + .-.+.+....++-.+.-.|+.+.+...|.+++.+.+ | -+.++.
T Consensus 28 RE~al~~ag~N~F~l~Sedv~IDLLTDSGTgams~~qwaamm~GDEAYagsrs~~~L~~avkdif----G----fq~~iP 99 (471)
T COG3033 28 REEALKKAGYNPFLLDSEDVFIDLLTDSGTGAMTDKQWAAMMRGDEAYAGSRSYYALADAVKDIF----G----FQYTIP 99 (471)
T ss_pred HHHHHHHcCCCeeeccccceEEEeeccCCcccccHHHHHHHhccchhhcccccHHHHHHHHHHhc----C----ceeeee
Confidence 33456677877777777773221 1 123445555556667788999999999999998886 3 256777
Q ss_pred eCChHHHHHHHHHHhcCCCC-----e-EEEcCCCCCChHHHHHHcCCEEEEecCCCCCC--------CcCCHHHHHhhhc
Q 012095 161 SNGAKQSILQAVLAVCSPGD-----E-VIIPAPFWVSYPEMARIADATPVILPTRISEN--------FLLDPKVLESKLT 226 (471)
Q Consensus 161 t~G~~~al~~~~~~l~~~gd-----~-Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~--------~~ld~e~l~~~l~ 226 (471)
|.-+..+-..++..++++|+ . |+..+..|.+.....+..|+.++-++++...+ ..+|++.|++.|.
T Consensus 100 thQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lid 179 (471)
T COG3033 100 THQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHIQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLID 179 (471)
T ss_pred ccCCccHHHHHHHHHhhhccccCCccccccccceecchhHHHHhcCCccccccccccccccccCCCCCccCHHHHHHHHH
Confidence 87777666666666665543 3 33345556677778889999998888765221 3579999999986
Q ss_pred c----CCcEEEEcC-CCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccC-CCcccc------CCCCccccccCCCC---C
Q 012095 227 E----KSRLLILCS-PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI-YEHIIY------APATHTSFASLPGM---W 291 (471)
Q Consensus 227 ~----~~~~i~i~~-p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~-y~~~~~------~~~~~~~~~~~~~~---~ 291 (471)
+ +.-.|++.- -|...|+..|.+-++++.++|++| ++.++.|.+ |.+-.| .+....++..+... +
T Consensus 180 evG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky-~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sY 258 (471)
T COG3033 180 EVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKY-DIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSY 258 (471)
T ss_pred HhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHc-CCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhh
Confidence 4 344566543 355788999999999999999999 999999976 332222 12223333322100 0
Q ss_pred CceEEEecCCcccCccchhheeeEcCHH----HHHHHHHHHh-----cccCCCChHHHHHHHHHHhccCCChHHHHHHHH
Q 012095 292 ERTLTVNGFSKAFAMTGWRLGYIAGPKH----FVAACNKIQS-----QFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 362 (471)
Q Consensus 292 ~~~i~~~S~SK~~g~~G~R~G~v~~~~~----~i~~l~~~~~-----~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~ 362 (471)
.. -..-|.-|- |+..+ -|+++.+++ +-..++...- +...+...=...+.+.-|.+.-. .+|+...++
T Consensus 259 aD-~~~mS~KKD-~lvnm-GGfl~~~D~~~fDvy~~~~~~~V~~eG~~tYGgl~GrdmealAvGL~e~~~-~~yl~~Rv~ 334 (471)
T COG3033 259 AD-GCTMSAKKD-GLVNM-GGFLCFKDDSFFDVYEECRTLVVVQEGFPTYGGLAGRDMEALAVGLREGVN-FDYLAHRVA 334 (471)
T ss_pred hh-hheeecccc-ceecc-ccEEEecCccHHHHHHHHHhheEeeccccccCcccchhHHHHHHHHHHhcC-cHHHHHHHH
Confidence 00 122333343 22210 177777655 4444443211 11223344444555555554332 466666554
Q ss_pred HHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccC-CcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC--CC--
Q 012095 363 AFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG-SEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--DD-- 437 (471)
Q Consensus 363 ~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~--~~-- 437 (471)
..++|.+.|.+. |+.+..|.||.-++++..+... ...+++ .++.|+-.|.++.||-.+--..|. .+
T Consensus 335 ----Qv~YL~~~l~~~-GVpi~~paGGHavfvda~~~lphip~eqF----paqala~ely~e~GiRavElG~~~~~rd~k 405 (471)
T COG3033 335 ----QVQYLADGLEEA-GVPIVQPAGGHAVFVDAGKFLPHIPAEQF----PAQALACELYKEAGIRAVELGSFSLGRDPK 405 (471)
T ss_pred ----HHHHHHHHHHhc-CCeeEecCCCceEEeehhhhcCCCChhhC----cHHHHHHHHHHHhCeeeeeeeceecccCCC
Confidence 445677788877 9999999999999988654322 223344 678888889999999766544442 11
Q ss_pred ---------CcEEEEeec---CHHHHHHHHHHHHHHHHh
Q 012095 438 ---------TCIRISYAA---SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 438 ---------~~iRis~~~---~~e~i~~~~~~l~~~l~~ 464 (471)
..+|+++.. +.+.++-.++.+++..+.
T Consensus 406 tg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~ 444 (471)
T COG3033 406 TGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKEN 444 (471)
T ss_pred ccccCCCchheeeEeccccccchhHHHHHHHHHHHHHhc
Confidence 369999986 778899999988887764
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-10 Score=113.92 Aligned_cols=323 Identities=11% Similarity=0.084 Sum_probs=206.2
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHc--C-------CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEE-EeCChHH
Q 012095 97 VIRLAAGEPDFDTPVLIAEAGINAIRE--G-------FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQIL-VSNGAKQ 166 (471)
Q Consensus 97 ~i~l~~g~~~~~~p~~v~~a~~~~~~~--~-------~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~-it~G~~~ 166 (471)
.++|+.|-.. .|++|.+++++.+.+ + ..+.++ -..++.+.+.+.+++.+++| +..+|+ ++.|++.
T Consensus 5 ~~nF~aGPa~--lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~--~F~~i~~~~~~~Lr~Ll~~P-~~y~Vlfl~GggT~ 79 (364)
T PRK12462 5 QLNFSGGPGA--LPDTVLEQVRQAVVELPETGLSVLGMSHRSS--WFSSLLAQAEADLRDLLGIP-DEYGVVFLQGGSSL 79 (364)
T ss_pred cceecCCCcC--CCHHHHHHHHHHHhcccccCccccccccccH--HHHHHHHHHHHHHHHHhCCC-CCCeEEEEeccHHH
Confidence 3455555433 377888888876654 1 223322 33566777777888888864 223564 5556999
Q ss_pred HHHHHHHHhcCCCCeEE--EcCCCCCCh-HHHHHHcCCEEEEecCCCCCC--CcCCHHHHHhhhccCCcEEEEcCCCCCc
Q 012095 167 SILQAVLAVCSPGDEVI--IPAPFWVSY-PEMARIADATPVILPTRISEN--FLLDPKVLESKLTEKSRLLILCSPSNPT 241 (471)
Q Consensus 167 al~~~~~~l~~~gd~Vl--v~~p~y~~~-~~~~~~~G~~~~~v~~~~~~~--~~ld~e~l~~~l~~~~~~i~i~~p~NPt 241 (471)
++..+...|+.+||.++ +....|..- ...++.+| ++..+......+ ..++++.+ .+.++.+.+.+++-.-.|
T Consensus 80 ~~ea~~~Nll~~g~~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~--~~~~d~~~v~~t~NETst 156 (364)
T PRK12462 80 QFSMIPMNFSRPGAAAPEYVTTGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSLAEL--DWDARAPFRHYVSNETVE 156 (364)
T ss_pred HHHHHHHHcCCCCCcEEEEEeCCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCHHHh--ccCCCCcEEEEccCCCCc
Confidence 99999999999999654 445555432 24566666 554443222222 23456665 234456777777666689
Q ss_pred ccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHH
Q 012095 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 321 (471)
Q Consensus 242 G~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i 321 (471)
|+.++ ++.+.+ +.++|+|-+-..+. ....+.. + .++..+.-|.+|.+| ++.++.+++++
T Consensus 157 Gv~~~--------~~~~~~-~~llvvD~sS~~~s----~pid~~~----~--dvi~agsQKnlgP~G--ltvvivs~~al 215 (364)
T PRK12462 157 GLQFP--------DAAGLP-DSPLIADMSSDFMS----RPFDVEA----Y--GMVYAHAQKNLGPAG--VTVAIIRRALL 215 (364)
T ss_pred eEecC--------cccccC-CCeEEEEcCchhhC----CCCChHH----c--cEEEeeccccCCCCc--eEEEEECHHHH
Confidence 99887 233346 78999998776421 1112211 2 377778889999777 67888888887
Q ss_pred HHHHHH------------HhcccCCCChHHHHHHHHHHhccCCChH--HHHHHHHHHHHHHHHHHHHhcCCCCCeee---
Q 012095 322 AACNKI------------QSQFTSGASSISQKAGVAALGLGYAGGE--VVSKMVKAFRERRDFLVKSFGELEGVKMS--- 384 (471)
Q Consensus 322 ~~l~~~------------~~~~~~~~~~~~q~aa~~~L~~~~~~~~--~~~~~~~~~~~~r~~l~~~L~~~~g~~~~--- 384 (471)
++.... ......+|+.+..+++..+|+.- .++ .++.+.++.+++.+.+++.+++.+|+...
T Consensus 216 ~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i--~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~~ 293 (364)
T PRK12462 216 ERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWI--RDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHAH 293 (364)
T ss_pred hhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHH--HHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCC
Confidence 654321 11223367788888887777642 134 68888999999999999999988654322
Q ss_pred -CCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHH
Q 012095 385 -EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKG 461 (471)
Q Consensus 385 -~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~ 461 (471)
.-.+-+-+.+++++. ....+|.+.+. +.|+.-..|.. .-+.+|+|+-. +.|.++.+++-++++
T Consensus 294 ~~~RS~mnv~f~~~~~-----------~l~~~f~~~a~-~~gl~~lkGhr--~vgg~Ras~yna~~~e~v~~L~~fm~~f 359 (364)
T PRK12462 294 RAARSTMNVAFRFRQP-----------RLDTLFKEQST-EAGFCGLSGHR--SIGGIRASLYNAVSEQAVSRLCAFLKDF 359 (364)
T ss_pred hhhcCcceEEEEcCCH-----------HHHHHHHHHHH-HCCCccccCCc--ccCceEEEcCCCCCHHHHHHHHHHHHHH
Confidence 123456667777643 14566777655 45888777653 35679999876 888888887777776
Q ss_pred HHh
Q 012095 462 LLT 464 (471)
Q Consensus 462 l~~ 464 (471)
-++
T Consensus 360 ~~~ 362 (364)
T PRK12462 360 AIR 362 (364)
T ss_pred HHh
Confidence 543
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8e-11 Score=112.08 Aligned_cols=183 Identities=19% Similarity=0.257 Sum_probs=120.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEE---eCChHHHHHHHHHHhcCCCCeEEE-cCCCCCChHHHH-----
Q 012095 126 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILV---SNGAKQSILQAVLAVCSPGDEVII-PAPFWVSYPEMA----- 196 (471)
Q Consensus 126 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~i---t~G~~~al~~~~~~l~~~gd~Vlv-~~p~y~~~~~~~----- 196 (471)
++|+-. ..=|+.+.+.+++.+| . +.-++ ..++|++|..++..+++|||+++. ...-|.+..+.+
T Consensus 47 TGYGY~---D~GRd~le~iyA~vfg---a-E~ALVRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~ 119 (403)
T PF06838_consen 47 TGYGYD---DIGRDKLERIYADVFG---A-EDALVRPQFVSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGN 119 (403)
T ss_dssp -TT-TT----HHHHHHHHHHHHHCT-----SEEEEETTS-SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSS
T ss_pred CcCCCC---CccHHHHHHHHHHHhC---c-hhhhhcccccchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCC
Confidence 556432 3457777777777776 2 33333 247899999999999999999885 445677777665
Q ss_pred -----HHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEE-cCCCCCcccCCCHHHHHHHHHHHHh-CCCeEEEEcc
Q 012095 197 -----RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLIL-CSPSNPTGSVYPKNLLDEIARIVAK-HPRLLVLSDE 269 (471)
Q Consensus 197 -----~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i-~~p~NPtG~~~~~~~l~~i~~l~~~-~~~~~ii~De 269 (471)
+..|.+...+++.+++ .+|.+.+++++++++|+++| -+-..-+-..++.++++++++++++ +|++++++|+
T Consensus 120 ~~GSL~e~Gi~Y~~v~L~~dg--~~D~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDN 197 (403)
T PF06838_consen 120 GPGSLKEFGIKYREVPLTEDG--TIDWEAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDN 197 (403)
T ss_dssp SSSSTGGGT-EEEE--B-TTS--SB-HHHHHHHHHTTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-
T ss_pred CCCChHHhCceeEEEeecCCC--CcCHHHHHHhhccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 5678899999998654 49999999999999999998 3455556677899999999999986 4789999999
Q ss_pred CCCccccCCCCccccccCCCCCCceEEEecCCcccCccchh--heeeEcCHHHHHHHHH
Q 012095 270 IYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWR--LGYIAGPKHFVAACNK 326 (471)
Q Consensus 270 ~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R--~G~v~~~~~~i~~l~~ 326 (471)
+|++|+-. ..+.-. +-.+..+|+=|..| .|+= -||+++.++++++...
T Consensus 198 CYGEFvE~--~EP~~v------GADl~aGSLIKNpG-GgiAptGGYIaGr~~lVe~~a~ 247 (403)
T PF06838_consen 198 CYGEFVET--QEPTEV------GADLMAGSLIKNPG-GGIAPTGGYIAGRKDLVERAAY 247 (403)
T ss_dssp TTTTTTSS--S-GGGG------T-SEEEEETTSGGG-TTT-SS-EEEEESHHHHHHHHH
T ss_pred Ccceeccc--cCcccc------chhheeccceeCCC-CCccCcCCEEechHHHHHHHHh
Confidence 99997632 222222 33389999999986 5432 4899999999998764
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-12 Score=112.74 Aligned_cols=90 Identities=22% Similarity=0.406 Sum_probs=75.0
Q ss_pred eEEcCCCC---CCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCcEEEeCChHHHHHHH
Q 012095 97 VIRLAAGE---PDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENG--LSYTPDQILVSNGAKQSILQA 171 (471)
Q Consensus 97 ~i~l~~g~---~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g--~~~~~~~i~it~G~~~al~~~ 171 (471)
+|.++.|+ |++.+|+.++++..+. ..|++..|.++||+++++|+++.+| +++++++|++|+|+++++..+
T Consensus 59 li~~~i~~~p~~d~~~~~~i~~~~~~~-----a~Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l 133 (153)
T PLN02994 59 LIEEWIEENPHADICTAEGTIDSFKDI-----ALFQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEII 133 (153)
T ss_pred HHHHHHhCCCccccCCcHHHHHHHHHH-----hcCCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHH
Confidence 44455555 4566666666655552 3488899999999999999999988 678899999999999999999
Q ss_pred HHHhcCCCCeEEEcCCCCCC
Q 012095 172 VLAVCSPGDEVIIPAPFWVS 191 (471)
Q Consensus 172 ~~~l~~~gd~Vlv~~p~y~~ 191 (471)
+.++++|||.|++++|+|+.
T Consensus 134 ~~~l~dpGD~VlVp~P~Y~~ 153 (153)
T PLN02994 134 MFCIADPGDAFLVPTPYYAA 153 (153)
T ss_pred HHHHcCCCCEEEEeCCCCCC
Confidence 99999999999999999974
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.5e-09 Score=115.88 Aligned_cols=326 Identities=11% Similarity=0.151 Sum_probs=201.8
Q ss_pred HHHHHHHHHHhcCCCe-EEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCC-----CCCHHHHHHHHHHHHHHhCCCCCC
Q 012095 82 AITDQATALAQAGVSV-IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPN-----AGTLELRSAICHKLKEENGLSYTP 155 (471)
Q Consensus 82 ~~~~~~~~~~~~g~~~-i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~-----~G~~~lr~~ia~~~~~~~g~~~~~ 155 (471)
++......+.+.++.+ ..++.|.-+.-.|+.+.+.+.+.- .-.+.|+|. +|..+..=.+...+.+..|+ +.
T Consensus 50 e~~~~~~~la~~N~~~~~fig~G~y~~~~p~~i~r~v~~~p-~~~TaytPyQ~EisQG~Le~l~e~Qt~i~eLtGm--~~ 126 (939)
T TIGR00461 50 EALAHLKKIASKNHKFKSYIGMGYYGTILPPVIQRNLLENP-GWYTAYTPYQPEISQGRLEALLNFQTVVSDLTGL--PV 126 (939)
T ss_pred HHHHHHHHHHhcCCCccccCCCCcCCCcCChHHHHHHHhCc-hhhhcCCCCChhhhhHHHHHHHHHHHHHHHHHCC--Ch
Confidence 3334444454444332 234666655445777775555321 114667664 46555544555555556675 45
Q ss_pred CcEEEeCChHHHHHHHHHHhc-C--CCCeEEEcCCCCCChHHHHH----HcCCEEEEecCCCCCCCcCCHHHHHhhhccC
Q 012095 156 DQILVSNGAKQSILQAVLAVC-S--PGDEVIIPAPFWVSYPEMAR----IADATPVILPTRISENFLLDPKVLESKLTEK 228 (471)
Q Consensus 156 ~~i~it~G~~~al~~~~~~l~-~--~gd~Vlv~~p~y~~~~~~~~----~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~ 228 (471)
.|.-+..+++++.+.++++.- . ++++|++++-.|+.+...++ ..|.+++.++ +++|++.+ +
T Consensus 127 aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~----------~~~l~~~~--~ 194 (939)
T TIGR00461 127 ANASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD----------CSDIKKAV--D 194 (939)
T ss_pred hhhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEc----------HHHHhhcC--C
Confidence 677888888888876666642 2 34899999999999886554 7788887763 34566555 4
Q ss_pred CcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCc--
Q 012095 229 SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM-- 306 (471)
Q Consensus 229 ~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~-- 306 (471)
+.++++.+|+. +|.+.+ +++|.++++++ +.+++++---..+ .+..-+++++-.|++++ +|.||+
T Consensus 195 ~~~v~~q~Pn~-~G~ied---~~~i~~~~h~~-gal~~~~ad~~al--------~ll~~Pge~GaDi~vg~-~q~fg~p~ 260 (939)
T TIGR00461 195 VFGCLLQYPAT-DGSILD---YKQLIDALHSH-KSLVSVAADLMAL--------TLLTPPGHYGADIVLGS-SQRFGVPM 260 (939)
T ss_pred EEEEEEECCCC-CeEEec---HHHHHHHHHHc-CCEEEEEechHHh--------CCcCCHHHcCCcEEeeC-CCccCCCC
Confidence 66777888876 888876 99999999999 8888874221111 11111222344455542 344443
Q ss_pred --cchhheeeEcCHHHHHHH----------------------------HHHHhcccCCCChHHHHHHHH--HHhccCCCh
Q 012095 307 --TGWRLGYIAGPKHFVAAC----------------------------NKIQSQFTSGASSISQKAGVA--ALGLGYAGG 354 (471)
Q Consensus 307 --~G~R~G~v~~~~~~i~~l----------------------------~~~~~~~~~~~~~~~q~aa~~--~L~~~~~~~ 354 (471)
.|--.|++.+++++++.+ ++.+...+.|.+....+.... +.-. ..
T Consensus 261 g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~---G~ 337 (939)
T TIGR00461 261 GYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVYH---GP 337 (939)
T ss_pred CCCCCceeeeeecHhhHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHHHHHHHHHHH---CH
Confidence 244467777776666554 122222333443333322222 2222 36
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceE--EeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC
Q 012095 355 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY--LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD 432 (471)
Q Consensus 355 ~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~ 432 (471)
+.++++.++...+..++.+.|.+. |+++..+ .|| +.++++. .+..++.++|+++ ||.+...
T Consensus 338 ~GL~~iA~~~~~~a~~l~~~L~~~-G~~~~~~--~fF~~~~v~~~~------------~~~~~i~~~~~~~-gi~l~~~- 400 (939)
T TIGR00461 338 KGLKNIARRIHSLTSILANGLEND-PHELINK--TWFDTLTVKVGN------------GISSELLKAAEEF-NINLRAV- 400 (939)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCcccCC--CccceEEEEeCC------------CCHHHHHHHHHHC-CCeeeec-
Confidence 778888888888999999999985 9887654 455 2334431 1578899988876 8887652
Q ss_pred CCCCCCcEEEEeec--CHHHHHHHHHHHH
Q 012095 433 AFGDDTCIRISYAA--SLTTLQAAVERIK 459 (471)
Q Consensus 433 ~f~~~~~iRis~~~--~~e~i~~~~~~l~ 459 (471)
.++.+++|+.. +.++|+.+++.+.
T Consensus 401 ---~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 401 ---DTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred ---CCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 24689999986 8899999999884
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.2e-10 Score=112.49 Aligned_cols=272 Identities=17% Similarity=0.180 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC-----CCcEEEeCChHHHHHHHHHHhcC--------
Q 012095 111 VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYT-----PDQILVSNGAKQSILQAVLAVCS-------- 177 (471)
Q Consensus 111 ~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~-----~~~i~it~G~~~al~~~~~~l~~-------- 177 (471)
..+.+.+...+......|...+...++.+.+.+++.+.+|.+-. ...=++|+|+++++..++.+..+
T Consensus 54 ~i~~~~l~~~~n~n~~~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~ 133 (373)
T PF00282_consen 54 SILADLLASALNQNGFTWEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKA 133 (373)
T ss_dssp HHHHHHHHHHHT-BTTSTTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccccccccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhh
Confidence 33455666666555555655566789999999999999997611 24568999999999877655421
Q ss_pred CC-----C-eEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc---C---CcEEEEcCCCCCcccCC
Q 012095 178 PG-----D-EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE---K---SRLLILCSPSNPTGSVY 245 (471)
Q Consensus 178 ~g-----d-~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~---~---~~~i~i~~p~NPtG~~~ 245 (471)
.| + .|++++-+|.+....+..+|..++.||+++ ++.+|+++|++++.+ + +-+|+.+..+..||.+=
T Consensus 134 ~~~~~~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~--~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D 211 (373)
T PF00282_consen 134 KGVEEIPKPVIYVSEQAHYSIEKAARILGLGVRKIPTDE--DGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAID 211 (373)
T ss_dssp HTTTHCSSEEEEEETTS-THHHHHHHHTTSEEEEE-BBT--TSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-
T ss_pred cccccccccccccccccccHHHHhcceeeeEEEEecCCc--chhhhHHHhhhhhcccccccccceeeeccCCCccccccc
Confidence 12 2 467778799999999999999999999985 567999999998853 2 22444566778899987
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCCcccc-CCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHH-HHHH
Q 012095 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIY-APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-FVAA 323 (471)
Q Consensus 246 ~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~-~i~~ 323 (471)
+ +++|+++|+++ ++|+.+|.+|+...+ .+........+. .-.=+.-+++|.++ .....|+++..+. .+..
T Consensus 212 ~---l~~i~~i~~~~-~~wlHVDaA~gg~~~~~~~~~~~~~gi~---~adSit~d~HK~l~-~P~~~~~~l~r~~~~l~~ 283 (373)
T PF00282_consen 212 P---LEEIADICEKY-NIWLHVDAAYGGSALLSPEYRHLLFGIE---RADSITIDPHKWLG-VPYGCGVLLVRDKSDLRD 283 (373)
T ss_dssp S---HHHHHHHHHHC-T-EEEEEETTGGGGGGHCTTGGGGTTGG---GESEEEEETTTTTS--SSS-EEEEESSGGGHHG
T ss_pred C---HHHHhhhcccc-ceeeeecccccccccccccccccccccc---cccccccchhhhhc-CCccceeEEeecccchHH
Confidence 7 99999999999 999999999998332 121111112221 11133456899997 5578899887543 3332
Q ss_pred -H-------HHHH---------hcccCCCCh-HHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC
Q 012095 324 -C-------NKIQ---------SQFTSGASS-ISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385 (471)
Q Consensus 324 -l-------~~~~---------~~~~~~~~~-~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~ 385 (471)
+ .... ...+...+. +....+...|.. ...+.+.+..++..+..+++.+.|++.+++++..
T Consensus 284 ~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR~~~alk~w~~l~~--~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~ 361 (373)
T PF00282_consen 284 AFSINADYLGNDDRESDESYDYGDYTLQGSRRFRALKLWATLKS--LGREGYRERIRRCIELARYLADRLRKDPRFELVN 361 (373)
T ss_dssp GGEEEETCTT-S-SSS-GGGCEEEGSSSSSGHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESS
T ss_pred HhccChhhhcccccccccccccccccccccccchHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 2 1000 001112222 222222223331 1356788888888999999999999998888764
Q ss_pred -CCcceEEeEe
Q 012095 386 -PQGAFYLFID 395 (471)
Q Consensus 386 -p~~g~~~~~~ 395 (471)
|.-+. +.++
T Consensus 362 ~~~~~~-vcFr 371 (373)
T PF00282_consen 362 EPDLNI-VCFR 371 (373)
T ss_dssp TTSSSE-EEEE
T ss_pred CCCceE-EEEE
Confidence 44444 4444
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.7e-09 Score=102.15 Aligned_cols=230 Identities=18% Similarity=0.155 Sum_probs=156.1
Q ss_pred EEcCCCCCCCCChHHHHHHHHHHHHcCC-CCCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHH
Q 012095 98 IRLAAGEPDFDTPVLIAEAGINAIREGF-TRYTPNAGT--LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (471)
Q Consensus 98 i~l~~g~~~~~~p~~v~~a~~~~~~~~~-~~Y~~~~G~--~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~ 174 (471)
.+-..|.+.+ .+++.+++..+..... ..|.-..|. ..++ .+++. ..+. ...+.+++++..+.++..++.+
T Consensus 30 ~~t~lG~s~~--~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~-~~~~~---~~~~-~~aea~~ivnnn~aAVll~~~a 102 (395)
T COG1921 30 LMTNLGRSLY--SPEAIEAMKEAMRAPVELETDLKTGKRGARLT-ELAEL---LCGL-TGAEAAAIVNNNAAAVLLTLNA 102 (395)
T ss_pred eeccCCCccC--CHHHHHHHHHHhcccceeeeecccchhhHHHH-HHHHH---Hhcc-cchhheeeECCcHHHHHHHHhh
Confidence 3334455443 5677777777765421 244333333 2233 22222 2343 2467899999999999988888
Q ss_pred hcCCCCeEE-----EcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEE-EcCCCCCcccCCCHH
Q 012095 175 VCSPGDEVI-----IPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLI-LCSPSNPTGSVYPKN 248 (471)
Q Consensus 175 l~~~gd~Vl-----v~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~-i~~p~NPtG~~~~~~ 248 (471)
+..++..|+ ++ +..+...+.++.+|++++.+.... .-...+++.++++++++++ +-+.|.+.=...+
T Consensus 103 l~~~~EvVis~g~lV~-gg~~~v~d~~~~aG~~l~EvG~tn----~t~~~d~~~AIne~ta~llkV~s~~~~f~~~l~-- 175 (395)
T COG1921 103 LAEGKEVVVSRGELVE-GGAFRVPDIIRLAGAKLVEVGTTN----RTHLKDYELAINENTALLLKVHSSNYGFTGMLS-- 175 (395)
T ss_pred hccCCeEEEEcccccc-CCCCChhHHHHHcCCEEEEecccC----cCCHHHHHHHhccCCeeEEEEeecccccccccc--
Confidence 877544443 33 678889999999999999997542 2588999999999999887 4445543333455
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHH
Q 012095 249 LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 328 (471)
Q Consensus 249 ~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~ 328 (471)
.++++++|++| ++++|+|.+-+..+-.......+.. .+-.+++.|--|.|| |.+-|.++|.+++++++++..
T Consensus 176 -~~~l~~ia~~~-~lpvivD~aSg~~v~~e~~l~~~la----~GaDLV~~SgdKllg--GPqaGii~GkKelI~~lq~~~ 247 (395)
T COG1921 176 -EEELVEIAHEK-GLPVIVDLASGALVDKEPDLREALA----LGADLVSFSGDKLLG--GPQAGIIVGKKELIEKLQSHP 247 (395)
T ss_pred -HHHHHHHHHHc-CCCEEEecCCccccccccchhHHHh----cCCCEEEEecchhcC--CCccceEechHHHHHHHHhhh
Confidence 77889999999 9999999988765432212222222 244589999999984 788999999999999998764
Q ss_pred hcccCCCChHHHHHHHHHHhc
Q 012095 329 SQFTSGASSISQKAGVAALGL 349 (471)
Q Consensus 329 ~~~~~~~~~~~q~aa~~~L~~ 349 (471)
-....-......++..++|+.
T Consensus 248 l~Ralrv~K~tla~l~~aLe~ 268 (395)
T COG1921 248 LKRALRVDKETLAALEAALEL 268 (395)
T ss_pred hhhhhhcCcHhHHHHHHHHHH
Confidence 444444566666777777764
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.1e-08 Score=96.16 Aligned_cols=346 Identities=15% Similarity=0.154 Sum_probs=208.7
Q ss_pred cCCCeEEcCCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHH
Q 012095 93 AGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 171 (471)
Q Consensus 93 ~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~ 171 (471)
.|.+-..+..|...+.. +...+-..+++.. +...-.-.++..++..+.-..+...++-+ ....=..|.|+++++.++
T Consensus 77 d~~~~~~~vS~~v~~~~-~~~~~l~~~~~~k~N~l~~d~fp~~~~~e~~~Vnm~~~L~~~~-~~~~g~~t~G~Ses~l~~ 154 (491)
T KOG1383|consen 77 DGNPRLGLASGVVYWGE-PELDKLIMEAYNKFNPLHPDEFPVVRKLEAECVNMIANLFNAP-SDSCGCGTVGGSESGLAA 154 (491)
T ss_pred CCCcccCeeeEEEecCC-cchhhHHHHHHhhcCccCccccchhHHHHHHHHHHHHHHhcCC-ccccCccccccchHHHHH
Confidence 34334444555544443 2333333333332 22222223577889999988888888755 223336788999995544
Q ss_pred HHHhc----C-CC---CeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCccc
Q 012095 172 VLAVC----S-PG---DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGS 243 (471)
Q Consensus 172 ~~~l~----~-~g---d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~ 243 (471)
-+..- . .| .+++++.-.+..+...++..+.++..||+++ +.|.+|+..+.+.+++++.+++-.-|+-|+|.
T Consensus 155 ~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf~v~l~~V~~~~-~~~~~D~~k~~~~i~eNti~lv~~~~~~p~G~ 233 (491)
T KOG1383|consen 155 KKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYFEVELREVPLDE-GDYRVDPGKVVRMIDENTIMLVGSLPNFPTGE 233 (491)
T ss_pred HHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhEEEEEEeeeccc-cceEecHHHHHHHhccceEEEEEEcCCCCccc
Confidence 44321 1 23 3567777777788888999999999999986 67999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHh-CCCeEEEEccCCCccccC-CCCccccccCCCCCCceEEEecC-CcccCccchhheeeEc-CHH
Q 012095 244 VYPKNLLDEIARIVAK-HPRLLVLSDEIYEHIIYA-PATHTSFASLPGMWERTLTVNGF-SKAFAMTGWRLGYIAG-PKH 319 (471)
Q Consensus 244 ~~~~~~l~~i~~l~~~-~~~~~ii~De~y~~~~~~-~~~~~~~~~~~~~~~~~i~~~S~-SK~~g~~G~R~G~v~~-~~~ 319 (471)
.=+ +++|.++..+ + ++.+.+|.+-+.|+-. +.....-+.+. ...|-.+..- .| ||+.---+||++- +++
T Consensus 234 ~e~---ve~l~~l~~e~w-~ipiHvDa~~GgFi~p~~~~~~~~fdFr--~p~V~Sisa~~HK-YGl~~~G~~~vl~r~k~ 306 (491)
T KOG1383|consen 234 IED---VEKLADLLLEIW-DIPIHVDACLGGFINPAGYLNEEEFDFR--VPGVTSISADGHK-YGLAPAGSSWVLYRNKE 306 (491)
T ss_pred hhh---HHHHHHHHHHHh-CCceeecccCccccccccccCccccccC--CCCceeEeeccce-eeeeecCcEEEEEcccc
Confidence 766 8899999988 9 9999999998887642 11111111221 1222222222 23 3443334788773 333
Q ss_pred HH--------HHHHHHHhcccCC-----CChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeee-C
Q 012095 320 FV--------AACNKIQSQFTSG-----ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-E 385 (471)
Q Consensus 320 ~i--------~~l~~~~~~~~~~-----~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~-~ 385 (471)
+. +.+..+....+.+ ....+|+++.-.| .++...+..+...+....+.+.++++.++.+. +
T Consensus 307 ~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~l-----G~eGY~~~~~~ive~~~~l~egie~i~~i~i~gk 381 (491)
T KOG1383|consen 307 LLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSL-----GEEGYRENTQNIVETARKLREGIENIKGIKIVGK 381 (491)
T ss_pred cccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHhhhccccceecCC
Confidence 22 2222222222221 2222333333222 35666677777888888899999998887765 3
Q ss_pred CCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec-CHHHHHHHHHHHHHHHHh
Q 012095 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 386 p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~-~~e~i~~~~~~l~~~l~~ 464 (471)
|.-+|.+| .-.. .+.-++.+.|.++ |= ..|+-.|-...++=++... .++--++++..|++++++
T Consensus 382 p~vs~~~~-~s~~------------~~i~elsd~l~~~-GW-~lnalq~P~a~Hi~vt~~~~~~~~A~~~v~Di~~~~~e 446 (491)
T KOG1383|consen 382 PLVSFILF-GSND------------VNIFELSDLLRKK-GW-ILNALQFPAAIHICVTRVHAREDVADRFVADIRKVVEE 446 (491)
T ss_pred CcEEEEEc-cCCc------------cchhhhhHHHHhc-Cc-CccccCCCCceEEEEEeeeccHHHHHHHHHHHHHHHHH
Confidence 44344222 2111 2566788877665 53 3343333332333333333 445568888888888888
Q ss_pred hCCC
Q 012095 465 LRPG 468 (471)
Q Consensus 465 ~~~~ 468 (471)
+...
T Consensus 447 l~~~ 450 (491)
T KOG1383|consen 447 LKSL 450 (491)
T ss_pred HHhC
Confidence 7544
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.1e-08 Score=98.83 Aligned_cols=329 Identities=18% Similarity=0.237 Sum_probs=171.0
Q ss_pred HHHHHHHHHhcCCC-eEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCC-----CCCCHHHHHHHHHHHHHHhCCCCCCC
Q 012095 83 ITDQATALAQAGVS-VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP-----NAGTLELRSAICHKLKEENGLSYTPD 156 (471)
Q Consensus 83 ~~~~~~~~~~~g~~-~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~-----~~G~~~lr~~ia~~~~~~~g~~~~~~ 156 (471)
+......+.++... .-.++.|.-+.-.|+.+.+.+.+.- .-.+.|+| ++|..+..-.+...+.+..|+++ .
T Consensus 52 ~~r~~~~la~kN~~~~~fiG~G~y~~~~P~~i~~~i~~~~-ef~TaYtPYQpEisQG~Lq~lfe~Qs~i~eLTGmdv--a 128 (429)
T PF02347_consen 52 LLRHLERLASKNKSYTSFIGAGSYTHYVPAVIDRNILSRP-EFYTAYTPYQPEISQGRLQALFEYQSMICELTGMDV--A 128 (429)
T ss_dssp HHHHHHHHHTTS--TTS---CTTT-----HHHHH-HHCCH-HCCCS-STTSGGGBHHHHHHHHHHHHHHHHHHTSSE--E
T ss_pred HHHHHHHHHhcCCCCCccccccccCceeChhhcCccccCh-hhhccCCCCCcHHHHHHHHHHHHHHHHHHHhhCCCc--c
Confidence 33344444443332 2224555544444655555233211 22456776 46766666666677777778643 3
Q ss_pred cEEEeCChHHHHHHHHHHh---cCCCCeEEEcCCCCCChHHHHH----HcCCEEEEecCCCCCCCcCCHHHHHhhhccCC
Q 012095 157 QILVSNGAKQSILQAVLAV---CSPGDEVIIPAPFWVSYPEMAR----IADATPVILPTRISENFLLDPKVLESKLTEKS 229 (471)
Q Consensus 157 ~i~it~G~~~al~~~~~~l---~~~gd~Vlv~~p~y~~~~~~~~----~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~ 229 (471)
|.-+-.|++..-..++++. -+.+++|++++-.|+.+...++ ..|.+++.++.+.++. .| ++++
T Consensus 129 NaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~~--~d--------~~~~ 198 (429)
T PF02347_consen 129 NASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDGT--TD--------DDDT 198 (429)
T ss_dssp -SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTCS--B---------STTE
T ss_pred CCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecccccCC--cc--------ccCe
Confidence 5556667777666555543 2334699999999999988554 4799999999875332 33 5688
Q ss_pred cEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCc---
Q 012095 230 RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM--- 306 (471)
Q Consensus 230 ~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~--- 306 (471)
.+|++.+||. .|.+-+ +++|.++++++ +.++++ -+. .+.... ..-+++++-.|++++ +|.||+
T Consensus 199 a~v~vq~Pn~-~G~~ed---~~~i~~~~h~~-gal~~~-~ad-~~aL~~------l~~Pge~GADI~vg~-~Q~fg~p~~ 264 (429)
T PF02347_consen 199 AAVMVQNPNT-FGVFED---IKEIADIAHAA-GALVIV-GAD-PNALGG------LKSPGEYGADIVVGE-HQTFGIPMG 264 (429)
T ss_dssp EEEEEESS-T-TSB--T---HHHHHHHHHHT-T-EEEE-CGG-CCGCCT------C--GGGGT-SEEEEC-CTTTT---C
T ss_pred EEEEeecCCC-CceEee---HHHHHHHHHHc-CCEEEE-ecC-HHHHhC------cCChhhcCccEEeeC-CCCCcccCC
Confidence 8999999986 788877 99999999999 887775 221 111111 112333444577776 677653
Q ss_pred -cchhheeeEcCHHHHHHH----------------------------HHHHhcccCCCChHHHH--HHHHHHhccCCChH
Q 012095 307 -TGWRLGYIAGPKHFVAAC----------------------------NKIQSQFTSGASSISQK--AGVAALGLGYAGGE 355 (471)
Q Consensus 307 -~G~R~G~v~~~~~~i~~l----------------------------~~~~~~~~~~~~~~~q~--aa~~~L~~~~~~~~ 355 (471)
.|--.|++.+.+++++.+ ++-+-..+.|.+....+ ++..+... ..+
T Consensus 265 ~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~---G~~ 341 (429)
T PF02347_consen 265 FGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYL---GPE 341 (429)
T ss_dssp CC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHH---HHH
T ss_pred CCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHh---CHH
Confidence 455678888888777755 22222344555544432 22333333 367
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC
Q 012095 356 VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 435 (471)
Q Consensus 356 ~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~ 435 (471)
.++++-+....+..++.+.|.++.++.+. ..-||=++..... .....++.++.+.. |+.. .+.
T Consensus 342 GL~~iA~~~~~~A~yl~~~L~~~~~~~~~--~~~f~e~v~~~~~----------~~~~~~l~~~~~~~-gl~~----~~~ 404 (429)
T PF02347_consen 342 GLREIAERIHLNAHYLAERLKKIYGLPFD--NPFFFEFVVVFSK----------DKEVEELLKRGIEG-GLNL----RYP 404 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCTTBECSS--SSSBSSEEEEESS-----------HHHHHHHHTT-----EEE----GGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccC--CCCceeeeeecCC----------cHHHHHHHHHHHhc-CCCc----ccc
Confidence 89999999999999999999997344443 2334322222110 00122233333322 4322 122
Q ss_pred CCCcEEEEeec--CHHHHHHHHHHH
Q 012095 436 DDTCIRISYAA--SLTTLQAAVERI 458 (471)
Q Consensus 436 ~~~~iRis~~~--~~e~i~~~~~~l 458 (471)
..+++-+++.. ++++|+.+++.|
T Consensus 405 ~~~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 405 DDGALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp -SSEEEEE--TT--HHHHHHHHH--
T ss_pred CCCeEEEEccCCCCHHHHHHHHhcC
Confidence 34577777775 778888888754
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.5e-07 Score=90.05 Aligned_cols=332 Identities=16% Similarity=0.192 Sum_probs=198.3
Q ss_pred HHHHHhcCCCeE-EcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCC-----CCCHHHHHHHHHHHHHHhCCCCCCCcEEE
Q 012095 87 ATALAQAGVSVI-RLAAGEPDFDTPVLIAEAGINAIREGFTRYTPN-----AGTLELRSAICHKLKEENGLSYTPDQILV 160 (471)
Q Consensus 87 ~~~~~~~g~~~i-~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~-----~G~~~lr~~ia~~~~~~~g~~~~~~~i~i 160 (471)
.+.+..+++... .++.|.-+--+|+.+.+.+.+.- ...+.|+|. +|..+..=.....+....|+++ .|--+
T Consensus 66 l~~ia~kN~~~~sfiG~GyY~~~~P~vI~rnile~p-ewyTaYTPYQpEISQGrLqaLfefQtlv~dLTGm~V--ANASm 142 (450)
T COG0403 66 LKEIASKNKVFTSFIGAGYYDTYTPPVILRNILENP-EWYTAYTPYQPEISQGRLEALFEFQTLVADLTGLDV--ANASM 142 (450)
T ss_pred HHHHHhcCchhhhhccCcccCCcCcHHHHHHhhcCc-cccccCCCCchhhhhHHHHHHHHHHHHHHHHhCCCc--ccchh
Confidence 333434444222 35666666666877775554321 124677764 4433322233334444467654 35556
Q ss_pred eCChHHHHHHHHHHhc---CCCCeEEEcCCCCCChHHHHHH----cCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEE
Q 012095 161 SNGAKQSILQAVLAVC---SPGDEVIIPAPFWVSYPEMARI----ADATPVILPTRISENFLLDPKVLESKLTEKSRLLI 233 (471)
Q Consensus 161 t~G~~~al~~~~~~l~---~~gd~Vlv~~p~y~~~~~~~~~----~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~ 233 (471)
--++|.+-+.++++.- .+.+.++++.-.|+.+.+.++. .|.+++.++.+ |.+.+++.....+.+++
T Consensus 143 ~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-------d~~~l~~~~~~~~~gv~ 215 (450)
T COG0403 143 LDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-------DLDDLESADDGDVFGVL 215 (450)
T ss_pred hhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-------hhhhhhhccccCeEEEE
Confidence 6677776666555542 2358999999999999987653 46777766653 77888887223678888
Q ss_pred EcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEE-ccCCCccccCCCCccccccCCCCCCceEEEec---CCcccCccch
Q 012095 234 LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLS-DEIYEHIIYAPATHTSFASLPGMWERTLTVNG---FSKAFAMTGW 309 (471)
Q Consensus 234 i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~-De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S---~SK~~g~~G~ 309 (471)
+-+|+. .| ...+++++|.+.++++ +.++++ =|.- ...+..-++.++-.|++++ |.=-+|..|-
T Consensus 216 vQyP~~-~G--~~~~d~~~l~~~~h~~-~al~~v~aDpl---------aL~LL~pPGe~GADIvvG~~QrfGvPmgfGGP 282 (450)
T COG0403 216 VQYPNT-FG--IVEEDLRALIEAAHSA-GALVIVAADPL---------ALGLLKPPGEFGADIVVGSAQRFGVPMGFGGP 282 (450)
T ss_pred EecCCC-CC--ccchhHHHHHHHHhhc-CCEEEEEechh---------HhhccCCccccCCceEEecCcccCCCcCCCCc
Confidence 888874 55 2333599999999998 766653 1111 1223333455666788886 4455566677
Q ss_pred hheeeEcCHHHHHHH----------------------------HHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHH
Q 012095 310 RLGYIAGPKHFVAAC----------------------------NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 361 (471)
Q Consensus 310 R~G~v~~~~~~i~~l----------------------------~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~ 361 (471)
..||..+.+++.+++ ++-+-..+.|.+..-.+.+...... +...+.+.++.
T Consensus 283 hag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~-~hGp~GLk~iA 361 (450)
T COG0403 283 HAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAV-YHGPQGLKEIA 361 (450)
T ss_pred ceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHH-HhChHHHHHHH
Confidence 888888888776644 3333344555554433322222211 11467899999
Q ss_pred HHHHHHHHHHHHHhcCCC-CCeeeCCCcceEE--eEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCC
Q 012095 362 KAFRERRDFLVKSFGELE-GVKMSEPQGAFYL--FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT 438 (471)
Q Consensus 362 ~~~~~~r~~l~~~L~~~~-g~~~~~p~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~ 438 (471)
.+..+...++.++|+++. |+++... .||= .++++.. ....+.++... .|+-+..-. ++
T Consensus 362 ~r~~~~a~~la~~L~~~~~g~~~~~~--~fFdt~~v~~~~~------------~~~~l~~~~~~-~G~~L~~~~----~~ 422 (450)
T COG0403 362 ERIHRLAAYLAAGLKEIGAGVELVFD--HFFDTFTVRVPEE------------VAEALLAAAIA-GGINLRRVD----AD 422 (450)
T ss_pred HHHHHHHHHHHHHHhhcCCceEeccc--cceeeEEEecchh------------HHHHHHHHHHh-cCCceeeec----CC
Confidence 999999999999999762 5666533 5553 3444321 34444554433 366554422 23
Q ss_pred cEEEEeec--CHHHHHHHHHHHHHH
Q 012095 439 CIRISYAA--SLTTLQAAVERIKKG 461 (471)
Q Consensus 439 ~iRis~~~--~~e~i~~~~~~l~~~ 461 (471)
.+=+++.. ++++|+.+++.+...
T Consensus 423 ~~~ia~tEt~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 423 TVLIALTETTTKEDIDALVAAFGGV 447 (450)
T ss_pred ceEEEeecccCHHHHHHHHHHHhhh
Confidence 55566654 678888888877654
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.7e-07 Score=96.92 Aligned_cols=279 Identities=13% Similarity=0.093 Sum_probs=167.9
Q ss_pred hHHHH-HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcC----C------
Q 012095 110 PVLIA-EAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS----P------ 178 (471)
Q Consensus 110 p~~v~-~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~----~------ 178 (471)
++.+. +.+...+..+...|...++...+.+.+.+++.+.+|.+ ...=.+|+|+|++...++.+.-+ |
T Consensus 96 ~paila~~~a~~~N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~--~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~ 173 (608)
T TIGR03811 96 MPAILAYNYAMLWNGNNVAYESSPATSQMEEEVGKEFATLMGYK--NGWGHIVADGSLANLEGLWYARNIKSLPFAMKEV 173 (608)
T ss_pred HHHHHHHHHHHHhCCCCCccccCchHHHHHHHHHHHHHHHhCCC--CCCeEEeCChHHHHHHHHHHHHHhhhccchhhhc
Confidence 44444 44444554445556566788999999999999999964 33445788888877654443211 0
Q ss_pred ------------------------------------------CC------eEEEcCCCCCChHHHHHHcCC---EEEEec
Q 012095 179 ------------------------------------------GD------EVIIPAPFWVSYPEMARIADA---TPVILP 207 (471)
Q Consensus 179 ------------------------------------------gd------~Vlv~~p~y~~~~~~~~~~G~---~~~~v~ 207 (471)
|. .|+++.-.|.++..++..+|. .++.||
T Consensus 174 ~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv~Vp 253 (608)
T TIGR03811 174 KPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVIPVP 253 (608)
T ss_pred cccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccEEEee
Confidence 00 477888889999999999999 589999
Q ss_pred CCCCCCCcCCHHHHHhhhcc----C--CcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCe--EEEEccCCCccc---c
Q 012095 208 TRISENFLLDPKVLESKLTE----K--SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL--LVLSDEIYEHII---Y 276 (471)
Q Consensus 208 ~~~~~~~~ld~e~l~~~l~~----~--~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~--~ii~De~y~~~~---~ 276 (471)
++ +++.+|++.|++.+.+ + +-+|+-+..+-.+|.+=+.+++.+|++.++++ ++ |+.+|.+|+++. +
T Consensus 254 vD--~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~-gl~~~lHVDAAyGG~~~~l~ 330 (608)
T TIGR03811 254 VD--SNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKE-GIYFYLHVDAAYGGYGRAIF 330 (608)
T ss_pred cC--CCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHc-CCceeEeeeccccchhhhhh
Confidence 86 4578999999998853 2 22344466777899999944444444444788 77 699999999742 1
Q ss_pred -CCCC-ccc-------------c-----------c-cCCCCCCceEEEecCCcccCccchhheeeEcCH-HHHHHHHHHH
Q 012095 277 -APAT-HTS-------------F-----------A-SLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAACNKIQ 328 (471)
Q Consensus 277 -~~~~-~~~-------------~-----------~-~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~-~~i~~l~~~~ 328 (471)
++.. ..+ + . .+.+...-.=+.-.++|.+. .....|.++..+ .+.+.+....
T Consensus 331 ~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~-~Py~~G~ll~Rd~~~~~~~~~~a 409 (608)
T TIGR03811 331 LDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGY-IPYSAGGIVIQDIRMRDVISYFA 409 (608)
T ss_pred ccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccc-cCCCeEEEEEeCHHHHHHHhcCc
Confidence 1100 000 0 0 01111111223445889975 556788777654 3333332100
Q ss_pred hc--------------ccCCCChHH--HHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCC------CCCee---
Q 012095 329 SQ--------------FTSGASSIS--QKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL------EGVKM--- 383 (471)
Q Consensus 329 ~~--------------~~~~~~~~~--q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~------~g~~~--- 383 (471)
.+ +....+.++ ..++...++.-....+.+.++..+.-+.++++.+.|.+. +.+++
T Consensus 410 ~Yl~~~~~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~~~~~~~~~el~~~ 489 (608)
T TIGR03811 410 TYVFEKGADIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNLEFKVGDKEIEVHPL 489 (608)
T ss_pred chhccccccCcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEec
Confidence 00 011122222 222222332211135678888888888888888888773 34553
Q ss_pred eCCCcceEEeE
Q 012095 384 SEPQGAFYLFI 394 (471)
Q Consensus 384 ~~p~~g~~~~~ 394 (471)
.+|+-++.+|.
T Consensus 490 ~~pdlniV~Fr 500 (608)
T TIGR03811 490 TKPDFNMVDYV 500 (608)
T ss_pred CCCCcceEEEE
Confidence 56777765443
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-07 Score=88.93 Aligned_cols=348 Identities=17% Similarity=0.157 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCC-------CCCCCCCCCHHHHHHHHHHHHHHhCCC
Q 012095 80 TVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGF-------TRYTPNAGTLELRSAICHKLKEENGLS 152 (471)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~-------~~Y~~~~G~~~lr~~ia~~~~~~~g~~ 152 (471)
+.++.+...+.+..| |.|=..++. +...+.+|+-..+.+.. ..|+.+.-+.++...-.++--+.|+.+
T Consensus 28 v~~ii~~Ek~RQ~~g---ieLIaSENF--ts~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq~RALeaF~ld 102 (477)
T KOG2467|consen 28 VHDIIEKEKERQKRG---IELIASENF--TSRAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQIELLCQKRALEAFGLD 102 (477)
T ss_pred HHHHHHHHHHhhhcc---eeEeecccc--hHHHHHHHHhHHhhcccccCCCcccccCcchHHHHHHHHHHHHHHHHhCCC
Confidence 345554444444444 444444443 46677788777776532 123333222222222222223346654
Q ss_pred CCCC--cEEEeCChHHHHHHHHHHhcCCCCeEEE---cCCCCCChHHHH--HHcCC-----EEEEecCCCCCCCcCCHHH
Q 012095 153 YTPD--QILVSNGAKQSILQAVLAVCSPGDEVII---PAPFWVSYPEMA--RIADA-----TPVILPTRISENFLLDPKV 220 (471)
Q Consensus 153 ~~~~--~i~it~G~~~al~~~~~~l~~~gd~Vlv---~~p~y~~~~~~~--~~~G~-----~~~~v~~~~~~~~~ld~e~ 220 (471)
-+.+ ||-.-+|+. |...+..+++.|+|+|+- |+..|-++--.. +.-.+ +--++.++++.+ -+|.|.
T Consensus 103 p~kWGVNVQp~SGSP-ANfavYtall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG-~IDYD~ 180 (477)
T KOG2467|consen 103 PEKWGVNVQPYSGSP-ANFAVYTALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTG-YIDYDK 180 (477)
T ss_pred HHHCceeeccCCCCc-hhhHHHhhhcCCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCCC-ceehHH
Confidence 4444 444455555 455588899999999883 333443322111 11011 112233444444 589999
Q ss_pred HHhhhcc-CCcEEEEcCCCCCcccCCCHH-HHHHHHHHHHhCCCeEEEEccCCCc-cccCCCCccccccCCCCCCceEEE
Q 012095 221 LESKLTE-KSRLLILCSPSNPTGSVYPKN-LLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWERTLTV 297 (471)
Q Consensus 221 l~~~l~~-~~~~i~i~~p~NPtG~~~~~~-~l~~i~~l~~~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~~~i~~ 297 (471)
|++.... +||+|+- .+..+++. +..++.++|.+. +.+++.|-+|-- ++-.+.-+.+| .. ..|+.
T Consensus 181 Le~~A~~frPk~iia------G~SaY~R~~DYaR~R~Iad~~-gA~Lm~DMAHISgLVAA~vipsPF-ey-----~DiVT 247 (477)
T KOG2467|consen 181 LEKTATLFRPKLIIA------GTSAYSRLIDYARFRKIADKV-GAYLMADMAHISGLVAAGVIPSPF-EY-----CDIVT 247 (477)
T ss_pred HHHHHHhcCCcEEEe------ccccchhhccHHHHHHHHHhc-CceeehhhhhHHHHHhcccCCCcc-cc-----cceee
Confidence 9986543 7887663 22333333 256677778888 899999999864 33333222222 22 23888
Q ss_pred ecCCcccCccchhheeeEcCH-----------H----HHHHHHHH-HhcccCCCChHHHHHHHHHHhccCCChHHHHHHH
Q 012095 298 NGFSKAFAMTGWRLGYIAGPK-----------H----FVAACNKI-QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 361 (471)
Q Consensus 298 ~S~SK~~g~~G~R~G~v~~~~-----------~----~i~~l~~~-~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~ 361 (471)
.|..|++ -|-|-|.+.-.+ + +-+++... ......+|......+.+.+|.... .....+..
T Consensus 248 TTTHKsL--RGPRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~--tpefk~Yq 323 (477)
T KOG2467|consen 248 TTTHKSL--RGPRGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAM--TPEFKEYQ 323 (477)
T ss_pred ccccccc--cCCcceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhC--CHHHHHHH
Confidence 8999996 788888876532 1 22222221 112233455555556666676432 23455666
Q ss_pred HHHHHHHHHHHHHhcCCCCCeeeC-CCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC----
Q 012095 362 KAFRERRDFLVKSFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---- 436 (471)
Q Consensus 362 ~~~~~~r~~l~~~L~~~~g~~~~~-p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~---- 436 (471)
++..++.+.+.+.|.+. |.++.. ...+..+.+++... + ..-.-+++.++..+|.+.--..||.
T Consensus 324 ~qV~~Nakala~~l~~~-Gy~lvtgGTDnHlvLvDLr~~-G----------~dGarvE~vle~~~I~~NKNtvpGD~Sal 391 (477)
T KOG2467|consen 324 KQVLKNAKALASALISR-GYKLVTGGTDNHLVLVDLRPK-G----------VDGARVEKVLELCHIALNKNTVPGDKSAL 391 (477)
T ss_pred HHHHHHHHHHHHHHHHc-CceEecCCccceEEEEecccc-C----------CchHHHHHHHHHhhhhhcCCcCCCCcccc
Confidence 66777888888888887 887753 33455677777643 1 2334456667766777665555553
Q ss_pred -CCcEEEEeec------CHHHHHHHHHHHHHHHH
Q 012095 437 -DTCIRISYAA------SLTTLQAAVERIKKGLL 463 (471)
Q Consensus 437 -~~~iRis~~~------~~e~i~~~~~~l~~~l~ 463 (471)
++.+|+...+ .++|+++..+-|.++++
T Consensus 392 ~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av~ 425 (477)
T KOG2467|consen 392 SPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAVK 425 (477)
T ss_pred CCCceeccchhhcccCccHHHHHHHHHHHHHHHH
Confidence 5789997543 56888888887777654
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.1e-08 Score=93.69 Aligned_cols=306 Identities=20% Similarity=0.191 Sum_probs=187.7
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCcEEE--eCChHH---HHHHHHHHh-cCCC----CeEEEcCCCCCChHHHHHHcC
Q 012095 131 NAGTLELRSAICHKLKEENGLSYTPDQILV--SNGAKQ---SILQAVLAV-CSPG----DEVIIPAPFWVSYPEMARIAD 200 (471)
Q Consensus 131 ~~G~~~lr~~ia~~~~~~~g~~~~~~~i~i--t~G~~~---al~~~~~~l-~~~g----d~Vlv~~p~y~~~~~~~~~~G 200 (471)
.+|+.++...+.+|+.+--|. +.|.+ ..|++. ++. +++.. -..| +.||+|+-.+.+....+..+|
T Consensus 104 vqG~l~li~~Lq~~L~~ITG~----DavsLQP~AGAqGE~aGll-~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~G 178 (496)
T COG1003 104 VQGYLELIYELQEWLKEITGM----DAVSLQPNAGAQGEYAGLL-AIRAYHESRGEGHRNICLIPDSAHGTNPASAAMAG 178 (496)
T ss_pred HHHHHHHHHHHHHHHHHhcCC----ceeeccCCCCcchhhHHHH-HHHHHHHHcCCCcCcEEEeeccccCCChhhHhhcC
Confidence 378899999999999987774 23433 334433 232 34433 2233 689999999999999999999
Q ss_pred CEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCC
Q 012095 201 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 280 (471)
Q Consensus 201 ~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~ 280 (471)
.+++.|+.+.++ .+|+++|++++.+++.++.|+|||. -| ++ ++.+++|+++.+++ |..|..|-+--.-..+-.
T Consensus 179 ~~VV~V~~~~~G--~VDlddLk~k~~~~~AalMiTnPsT-~G-vF-E~~I~ei~~ivH~~-Gg~vY~DGANlNA~vG~~- 251 (496)
T COG1003 179 FKVVVVKCDENG--NVDLDDLRAKAEDNLAALMITNPST-LG-VF-EEDIREICEIVHEA-GGQVYYDGANLNAIVGLA- 251 (496)
T ss_pred ceEEEEecCCCC--CccHHHHHHHhccceeEEEeccCcc-cc-cc-hhhHHHHHHHHHHc-CCEEEecCcchhhhhccc-
Confidence 999999998655 4999999999999999999998874 23 33 45699999999999 999999987654322211
Q ss_pred ccccccCCCCCCceEEEecCCcccCc----cchhheeeEcCHHHHHHHHH------HH--------------hcccCCCC
Q 012095 281 HTSFASLPGMWERTLTVNGFSKAFAM----TGWRLGYIAGPKHFVAACNK------IQ--------------SQFTSGAS 336 (471)
Q Consensus 281 ~~~~~~~~~~~~~~i~~~S~SK~~g~----~G~R~G~v~~~~~~i~~l~~------~~--------------~~~~~~~~ 336 (471)
-+++.+-.|+=--+.|+|+. .|--.|=+...++++..+-. .. ....++.-
T Consensus 252 ------rPGd~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~ 325 (496)
T COG1003 252 ------RPGDMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSA 325 (496)
T ss_pred ------cccccccceEEeecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCcc
Confidence 11222222333346777743 33345545444444333211 00 00011111
Q ss_pred hHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCee-eCCC--cceEEeEecCCccCCcccCCCCCCCH
Q 012095 337 SISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-SEPQ--GAFYLFIDFSTYYGSEAEGFGKIENS 413 (471)
Q Consensus 337 ~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~-~~p~--~g~~~~~~~~~~~~~~~~~~~~~~~~ 413 (471)
++-..+-...+.. ..+.+++.-+.---+.+++.+.|+.. +++ +.+. ...=+.++..... + +.....
T Consensus 326 ~il~~a~~YI~~m---G~~GL~~ase~AvLNANYia~rL~~~--y~~~y~~~~~~~HE~ild~r~l~----~--~~Gv~~ 394 (496)
T COG1003 326 SILPIAWAYIRMM---GADGLKQASEVAVLNANYIARRLKGY--YPVPYTGENRVAHECILDARPLK----K--ETGVRA 394 (496)
T ss_pred hHHHHHHHHHHHH---hHHHHHHHHHHHHHhHHHHHHHhhhc--CccccCCCCcceeEEEeechHhH----h--hcCCcH
Confidence 2222222222222 34556666666667888899999863 222 1222 1221233333110 0 111378
Q ss_pred HHHHHHHHHcCCEEEECCCCCC--CCCcEEEEeec--CHHHHHHHHHHHHHHHHhhCC
Q 012095 414 ESLCRYLLDKAQVALVPGDAFG--DDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 467 (471)
Q Consensus 414 ~~l~~~Ll~~~gV~v~pg~~f~--~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~~~ 467 (471)
.+++++|+.. |+.. |--.|- ..+.+-|=... +.++++++++++.++.++.+.
T Consensus 395 ~DvAKrLlD~-GfHa-PT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~~ 450 (496)
T COG1003 395 LDVAKRLLDY-GFHA-PTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREEADA 450 (496)
T ss_pred HHHHHHHHhc-CCCC-CcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 8999999975 7753 323343 45777776665 678999999999988876543
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.1e-08 Score=92.68 Aligned_cols=183 Identities=17% Similarity=0.265 Sum_probs=123.0
Q ss_pred CCCCC-CCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcC-CCCCChHHH--------
Q 012095 126 TRYTP-NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA-PFWVSYPEM-------- 195 (471)
Q Consensus 126 ~~Y~~-~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~-p~y~~~~~~-------- 195 (471)
++|+- +.|-..|.+..|+- +|..-..-+.-+. ++++++..++..+++|||+.+.-. --|....+.
T Consensus 58 tGYGydD~GRdtLe~vyA~v----f~aE~a~VRpq~i-sGTHAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~ 132 (416)
T COG4100 58 TGYGYDDLGRDTLERVYAQV----FGAEAALVRPQII-SGTHAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQ 132 (416)
T ss_pred CCCCccccchhHHHHHHHHH----hccccceeeeeee-cchhHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCc
Confidence 45542 34444444444444 4522111122233 567889999999999999987543 334444443
Q ss_pred --HHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEc-CCCCCcccCCCHHHHHHHHHHHHh-CCCeEEEEccCC
Q 012095 196 --ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILC-SPSNPTGSVYPKNLLDEIARIVAK-HPRLLVLSDEIY 271 (471)
Q Consensus 196 --~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~-~p~NPtG~~~~~~~l~~i~~l~~~-~~~~~ii~De~y 271 (471)
.+..|.....+|+..++ .+|.+.+++.+++++|+|.|- +-..----.++.+++++++++.++ +|++++.+|++|
T Consensus 133 gSL~dfgi~Y~~v~Lt~~g--kiD~~~v~~~i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCY 210 (416)
T COG4100 133 GSLKDFGIKYKAVPLTADG--KIDIQAVKTAISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCY 210 (416)
T ss_pred ccHHHhCcceeecccccCC--cccHHHHHHhcCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccc
Confidence 35677888888887554 599999999999999999873 222222234788899999999987 578999999999
Q ss_pred CccccCCCCccccccCCCCCCceEEEecCCcccCccchh--heeeEcCHHHHHHH
Q 012095 272 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWR--LGYIAGPKHFVAAC 324 (471)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R--~G~v~~~~~~i~~l 324 (471)
++|+-. ..+.-. +-.+..+|+-|.-| .|+- -||+.+.++++++.
T Consensus 211 GEFvE~--~EPt~v------GaDliAGSLIKNpG-GgiaktGGYiaGk~~~ve~~ 256 (416)
T COG4100 211 GEFVEE--KEPTHV------GADLIAGSLIKNPG-GGIAKTGGYIAGKAELVEAA 256 (416)
T ss_pred hhhhhc--cCcccc------chhhhccceeeCCC-CceeeccceeechHHHHHhh
Confidence 998632 222221 22377889989876 4432 38999999999865
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.8e-09 Score=102.04 Aligned_cols=215 Identities=21% Similarity=0.207 Sum_probs=56.5
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCC------ChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc
Q 012095 154 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWV------SYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 227 (471)
Q Consensus 154 ~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~------~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~ 227 (471)
..+..+++|+...++.+++.+++ +|.+|++....-. -..++++..|++++.|-... .-.++++++++++
T Consensus 61 gAeaA~VvNnnaAAv~L~l~~la-~~~EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGttN----~t~~~Dye~AI~e 135 (367)
T PF03841_consen 61 GAEAALVVNNNAAAVLLALNTLA-KGKEVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGTTN----RTHLSDYEKAITE 135 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc----ccccccccccccc
Confidence 35677788888888888888876 5777877654322 14567889999999998642 2478899999999
Q ss_pred CCcEEEEcCCCCCc--ccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccc----cCCCCccccccCCCCCCceEEEecCC
Q 012095 228 KSRLLILCSPSNPT--GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII----YAPATHTSFASLPGMWERTLTVNGFS 301 (471)
Q Consensus 228 ~~~~i~i~~p~NPt--G~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~----~~~~~~~~~~~~~~~~~~~i~~~S~S 301 (471)
+|.+|+-.+++|-. |..-.. .++++++++++| ++++|+|-.-+.+. |+-...+++..... .+-.+++.|-.
T Consensus 136 ~Ta~ll~Vh~Sn~~i~GFt~~~-~~~el~~la~~~-~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~-~GaDlV~fSGd 212 (367)
T PF03841_consen 136 NTAALLKVHTSNFRIQGFTGEV-SLEELAELAKEH-GLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLA-AGADLVTFSGD 212 (367)
T ss_dssp --------------------------HHHHHHHHH-T--EEEE-TTHHHHHHHTT----------CCC-CT-SEEEEETT
T ss_pred cccccccccccccccccccccc-cHHHHHHHHhhc-CCcEEEECCCCCCcCcccccCccccHHHHHhh-cCCCEEEEECC
Confidence 99999888887753 322222 289999999999 99999998764332 11112234444322 35568999999
Q ss_pred cccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCC---------ChHHHHHHHHHHHHHHHHHH
Q 012095 302 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA---------GGEVVSKMVKAFRERRDFLV 372 (471)
Q Consensus 302 K~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~---------~~~~~~~~~~~~~~~r~~l~ 372 (471)
|.+| |-..|.+++.+++|+++++..-.-.+-..-+...+..+.|..-.. ...++....+.++++.+.+.
T Consensus 213 KlLG--GPQaGiI~Gkk~lI~~lk~~pl~RalrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~~~~~L~~rA~~l~ 290 (367)
T PF03841_consen 213 KLLG--GPQAGIIVGKKELIEKLKKHPLGRALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQSLEELRARAERLA 290 (367)
T ss_dssp SSSS--S-S-EEEEEEHHHHHHHHHHHHTTT-B--HHHHHHHHHHHHH--------------------------------
T ss_pred CcCC--CCCeEEEEeCHHHHHHHhhCCCcceEeeCHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccc
Confidence 9986 566899999999999998754433444667777777777664110 01224444556667777777
Q ss_pred HHhcCC
Q 012095 373 KSFGEL 378 (471)
Q Consensus 373 ~~L~~~ 378 (471)
..|...
T Consensus 291 ~~l~~~ 296 (367)
T PF03841_consen 291 AQLKAA 296 (367)
T ss_dssp ------
T ss_pred cccccc
Confidence 777664
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.5e-07 Score=83.91 Aligned_cols=346 Identities=12% Similarity=0.085 Sum_probs=185.4
Q ss_pred CCCeEEcCCCCCCCCC-hHHHHHHHHHHHHcCC--CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHH
Q 012095 94 GVSVIRLAAGEPDFDT-PVLIAEAGINAIREGF--TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQ 170 (471)
Q Consensus 94 g~~~i~l~~g~~~~~~-p~~v~~a~~~~~~~~~--~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~ 170 (471)
|...+|.-.|.--.+. +|++.+|...++..-. .++- ..+|-+......+.. ..-+-++++|+++++..+
T Consensus 46 g~~yLDCInNVaHvghchp~VV~A~~kQmat~~tN~RFl----hd~lv~cA~~l~stl----PeLsvc~F~NSGSEANDL 117 (452)
T KOG1403|consen 46 GTRYLDCINNVAHVGHCHPEVVRAGAKQMATISTNNRFL----HDELVQCARTLTSTL----PELSVCFFVNSGSEANDL 117 (452)
T ss_pred cccHHHHhhhhhhcccCCHHHHHHHHHHHhHhcccchhh----HHHHHHHHHHHhhcC----CCceEEEEecCCchhhHH
Confidence 4444443333322232 6778888877665321 2221 123333332222211 123567889999999999
Q ss_pred HHHHhcC--CCCeEEEcCCCCCChHHH-HHH------cCC-----EEEEe-cCCC------------CCC-CcCCHHHHH
Q 012095 171 AVLAVCS--PGDEVIIPAPFWVSYPEM-ARI------ADA-----TPVIL-PTRI------------SEN-FLLDPKVLE 222 (471)
Q Consensus 171 ~~~~l~~--~gd~Vlv~~p~y~~~~~~-~~~------~G~-----~~~~v-~~~~------------~~~-~~ld~e~l~ 222 (471)
+++..-+ ...-|++.+..|.+.... ++. .|. +.+.| |+.. +.+ ...-.+.++
T Consensus 118 ALRLAR~ftkhqDvItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk 197 (452)
T KOG1403|consen 118 ALRLARNFTKHQDVITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYADPVK 197 (452)
T ss_pred HHHHHHhhcccCceEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccccCCcccchhhhhhHHH
Confidence 8887532 334455666667655422 111 011 11111 1110 000 001123344
Q ss_pred hhhc----cCC--cEEEEcCCCCCcccCCCHH-HHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceE
Q 012095 223 SKLT----EKS--RLLILCSPSNPTGSVYPKN-LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 295 (471)
Q Consensus 223 ~~l~----~~~--~~i~i~~p~NPtG~~~~~~-~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i 295 (471)
+.++ +.. .+.+-.+-++-.|.++|+. ..+++++..+.+ +-+.|.||+..+|-.-|.. +|.+. .++-+-
T Consensus 198 ~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~a-GGv~IaDEVQvGFGRvG~h---yWafq-~y~fiP 272 (452)
T KOG1403|consen 198 EICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSA-GGVCIADEVQVGFGRVGSH---YWAFQ-TYNFIP 272 (452)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcC-CCeEEeehhhhcccccchh---hhhhh-hhcccc
Confidence 4332 222 2223345577778766654 689999999999 7788889999886433332 23221 122222
Q ss_pred EEecCCcccCccchhheeeEcCHHHHHHHHH--HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHH
Q 012095 296 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNK--IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 373 (471)
Q Consensus 296 ~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~--~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~ 373 (471)
-+-++.|.+| .|..++.++..+++.+++.. .....+++.++.+.+++.+.++.-. . +++.+.-++.-++|..
T Consensus 273 DIVtmgKpmG-NGhPVa~VattkeIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e--~---E~Lq~ha~~vG~~L~~ 346 (452)
T KOG1403|consen 273 DIVTMGKPMG-NGHPVAAVATTKEIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCE--D---ENLQEHAQQVGEKLEV 346 (452)
T ss_pred chheecccCC-CCCeeeEEeccHHHHHHhccccceehhccCCCchhHHHHHHHHHHHh--h---hhHHHHHHHHHHHHHH
Confidence 3556889999 99999999999999999875 3444577889999988888887411 1 1222222333333333
Q ss_pred HhcCCC-CCeeeC--CCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe--ecCH
Q 012095 374 SFGELE-GVKMSE--PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY--AASL 448 (471)
Q Consensus 374 ~L~~~~-g~~~~~--p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~--~~~~ 448 (471)
.|+++. ..+++. -.-|.|+-+++-+......+. -..+.-+..+|.+.++|++..-.+ ..+-+.|-. +-++
T Consensus 347 lL~~~k~kh~~IGDvRGvGLFiGIdLVkD~~tRtP~---tk~A~~~v~rlke~y~VLlsaDGP--h~NilKiKPPmCFne 421 (452)
T KOG1403|consen 347 LLRRLKQKHECIGDVRGVGLFIGIDLVKDRKTRTPD---TKEAHWVVNRLKELYRVLLSADGP--HRNILKIKPPMCFNE 421 (452)
T ss_pred HHHHHhhhccceeccccceEEEeeeeecccccCCCc---HHHHHHHHHHHHHhhhEEEecCCC--CCceeecCCCcccCh
Confidence 333320 122221 233666766664321110000 012344556777888898865321 123445543 3388
Q ss_pred HHHHHHHHHHHHHHH
Q 012095 449 TTLQAAVERIKKGLL 463 (471)
Q Consensus 449 e~i~~~~~~l~~~l~ 463 (471)
++.++.+..|.++|.
T Consensus 422 ena~e~v~~ld~iLT 436 (452)
T KOG1403|consen 422 ENADEFVLGLDEILT 436 (452)
T ss_pred hhHHHHHHHHHHHHH
Confidence 888888888888775
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.7e-06 Score=90.42 Aligned_cols=329 Identities=13% Similarity=0.124 Sum_probs=193.1
Q ss_pred HHHHHHHHHHhcCCC-eEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCC-----CCCHHHHHHHHHHHHHHhCCCCCC
Q 012095 82 AITDQATALAQAGVS-VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPN-----AGTLELRSAICHKLKEENGLSYTP 155 (471)
Q Consensus 82 ~~~~~~~~~~~~g~~-~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~-----~G~~~lr~~ia~~~~~~~g~~~~~ 155 (471)
++....+.+..+++. ...++.|.-+--.|..+.+.+.+.- .-.+.|+|. +|..+..=.....+.+..|+++.
T Consensus 65 e~~~~~~~~a~kN~~~~~fiG~G~y~~~~P~vi~~~i~~~~-~~yTaYTPYQpEisQG~Lqal~e~Qtmi~~LtGm~va- 142 (954)
T PRK12566 65 AALARLRGYAEQNQVWTSLIGMGYHGTVTPTVILRNVLENP-GWYTAYTPYQPEIAQGRLEALLNFQQMTIDLTGLDLA- 142 (954)
T ss_pred HHHHHHHHHHhcCCCccccccccccCCcCcHHHHHHHHhCc-hhhhcCCCCCchhhhHHHHHHHHHHHHHHHHhCchhh-
Confidence 333444444444432 3446666666556777755554321 124667764 45544444444455555676543
Q ss_pred CcEEEeCChHHHHHHHHHHhc---CCCCeEEEcCCCCCChHHHHH----HcCCEEEEecCCCCCCCcCCHHHHHhhhccC
Q 012095 156 DQILVSNGAKQSILQAVLAVC---SPGDEVIIPAPFWVSYPEMAR----IADATPVILPTRISENFLLDPKVLESKLTEK 228 (471)
Q Consensus 156 ~~i~it~G~~~al~~~~~~l~---~~gd~Vlv~~p~y~~~~~~~~----~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~ 228 (471)
|--+-.|++.+-+.++++.- .+...|++++-.++.+...++ ..|.+++. +++++.+.++
T Consensus 143 -NASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~-------------~~~~~~~~~~ 208 (954)
T PRK12566 143 -NASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV-------------DAVDNLAAHA 208 (954)
T ss_pred -hhhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE-------------cchhhcCCCC
Confidence 44444565554443333331 224689999999999887654 45666553 3344455556
Q ss_pred CcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEe---cCCcccC
Q 012095 229 SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVN---GFSKAFA 305 (471)
Q Consensus 229 ~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~---S~SK~~g 305 (471)
+.++++.+|+. .|.+-+ +++|.++++++ +.++|+ .+. .+ ...+..-++.++-.|+++ +|+=-+|
T Consensus 209 ~~~v~vq~P~~-~G~i~d---~~~i~~~~h~~-gal~~~-~~d-~l------aL~ll~~Pge~GADI~vG~~Q~fGvp~~ 275 (954)
T PRK12566 209 VFGALLQYPDT-HGEIRD---LRPLIDQLHGQ-QALACV-AAD-LL------SLLVLTPPGELGADVVLGSTQRFGVPMG 275 (954)
T ss_pred EEEEEEECCCC-ceEEcc---HHHHHHHHHHc-CCEEEE-EeC-HH------HHhCCCChhhcCCcEEeeCCCcCCCCCC
Confidence 77888888875 788855 99999999998 776552 211 11 111222244456667777 3555555
Q ss_pred ccchhheeeEcCHHHHHHH----------------------------HHHHhcccCCCChHHHHHHHHHHhccCCChHHH
Q 012095 306 MTGWRLGYIAGPKHFVAAC----------------------------NKIQSQFTSGASSISQKAGVAALGLGYAGGEVV 357 (471)
Q Consensus 306 ~~G~R~G~v~~~~~~i~~l----------------------------~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~ 357 (471)
..|--.||+.+.+++.+++ ++-+-..+.|.+..-.+.+.+.... ....+.+
T Consensus 276 ~GGP~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~-~~Gp~Gl 354 (954)
T PRK12566 276 YGGPHAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAV-YHGPEGL 354 (954)
T ss_pred CCCCCeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHH-HhChHHH
Confidence 5666688888888777755 2223334445444333222222211 0135778
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCC
Q 012095 358 SKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD 437 (471)
Q Consensus 358 ~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~ 437 (471)
+++.++...+..++.+.|.+. |+++... .||=-+.+.-. ....++.+..+++ ||-++--. +
T Consensus 355 ~~ia~~~~~~a~~l~~~l~~~-g~~~~~~--~fF~~~~v~~~-----------~~~~~~~~~a~~~-~~n~r~~~----~ 415 (954)
T PRK12566 355 KRIAQRVHRLTAILAAGLEAK-GIKRLNR--HFFDTLTLEVG-----------GAQAAIIESAEAA-RINLRILG----R 415 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CCccccC--CccceEEEEcc-----------CCHHHHHHHHHHC-CCeeEEeC----C
Confidence 888888888999999999984 8876532 56643333211 0356677766655 77665532 4
Q ss_pred CcEEEEeec--CHHHHHHHHHHHH
Q 012095 438 TCIRISYAA--SLTTLQAAVERIK 459 (471)
Q Consensus 438 ~~iRis~~~--~~e~i~~~~~~l~ 459 (471)
+.+.+|+.. +.++++..+..+.
T Consensus 416 ~~~~~s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 416 GRLGVSLDETCDEATVARLFDIFL 439 (954)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHhc
Confidence 578888886 7889998888874
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.62 E-value=5e-06 Score=81.29 Aligned_cols=308 Identities=18% Similarity=0.171 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEeCChHHH-HHHHHHHhc--CCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCC-
Q 012095 138 RSAICHKLKEENGLSYTPDQILVSNGAKQS-ILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN- 213 (471)
Q Consensus 138 r~~ia~~~~~~~g~~~~~~~i~it~G~~~a-l~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~- 213 (471)
-..+...+-+..|.. +....++.+.+|.. +.+.+.++- ..++.|+.+.-.+.+-...+..+|.+++.|+...+++
T Consensus 58 tn~l~~d~~~~~G~~-~~~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~~AGl~~~vV~~~~~~d~ 136 (389)
T PF05889_consen 58 TNSLVLDALRLAGLR-SVKSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIERAGLEPVVVENVLEGDE 136 (389)
T ss_dssp HHHHHHHHHHHTTHT-THCEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHHHTT-EEEEE-EEEETTE
T ss_pred HHHHHHHHHHHcCCc-cccceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHHhcCCeEEEeeccCCCCe
Confidence 333333333446753 33567777766553 333344442 3568999888777777778899999999999644333
Q ss_pred CcCCHHHHHhhhcc---CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCC-CCccccccCCC
Q 012095 214 FLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP-ATHTSFASLPG 289 (471)
Q Consensus 214 ~~ld~e~l~~~l~~---~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~ 289 (471)
..-|++.+++.+++ ...+.++++++---|.. .+++++|+++|++| |+..|+-.+|+-=...- +........
T Consensus 137 l~td~~~ie~~i~~~G~~~iLcvltttscfapr~--~D~i~~IakiC~~~-~IPhlvNnAYgvQ~~~~~~~i~~a~~~-- 211 (389)
T PF05889_consen 137 LITDLEAIEAKIEELGADNILCVLTTTSCFAPRL--PDDIEEIAKICKEY-DIPHLVNNAYGVQSSKCMHLIQQAWRV-- 211 (389)
T ss_dssp EEEHHHHHHHHHHHHCGGGEEEEEEESSTTTTB------HHHHHHHHHHH-T--EEEEGTTTTT-HHHHHHHHHHHHH--
T ss_pred eeccHHHHHHHHHHhCCCCeEEEEEecCccCCCC--CccHHHHHHHHHHc-CCceEEccchhhhHHHHHHHHHHHHhc--
Confidence 34477888888753 34455566553222332 33699999999999 99999999997410000 000000000
Q ss_pred CCCceEEEecCCcccCccchhheeeEc-CHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCC-ChHHHHHHHHHHHHH
Q 012095 290 MWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA-GGEVVSKMVKAFRER 367 (471)
Q Consensus 290 ~~~~~i~~~S~SK~~g~~G~R~G~v~~-~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~-~~~~~~~~~~~~~~~ 367 (471)
..-.+++.|.-|.| |.+.--+.+.+ .+..+..+.+....-.+..+. ......+|..|.. ....+.++.+.+...
T Consensus 212 -GRvda~vqS~dkNF-~VPvGgai~As~~~~~i~~vs~~YpGRas~sp~--ld~~itLl~LG~~g~~~ll~~r~~~f~~l 287 (389)
T PF05889_consen 212 -GRVDAFVQSTDKNF-MVPVGGAIMASFDPSGILAVSKEYPGRASASPS--LDLFITLLSLGCTGYGALLKERKASFPYL 287 (389)
T ss_dssp -STCSEEEEEHHHHH-CEESSHEEEEESSHHHHHHHHHTSHSHBTSHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcceeeeecCCCE-EecCCCcEEEecCHHHHHHHHHHhhhhhhcccc--hHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 11127899999999 45544455554 456777776543222322233 3334444443210 012233333333333
Q ss_pred HHHHHHHhcCCCCCeee-CCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCE---E-EECCCCCC-------
Q 012095 368 RDFLVKSFGELEGVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV---A-LVPGDAFG------- 435 (471)
Q Consensus 368 r~~l~~~L~~~~g~~~~-~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV---~-v~pg~~f~------- 435 (471)
.+.+.+.-++. |-.+. .|....-+.+.++...... + .+...|...|..+ || . +.|+..+.
T Consensus 288 ~erl~~~aee~-~e~ll~~p~N~is~a~tl~~l~~~~--~----k~~~~lgs~Lf~R-~VsG~RvV~~~~~~~tsh~~~y 359 (389)
T PF05889_consen 288 KERLKKWAEEV-GERLLETPRNHISMAFTLDTLYEIS--Q----KDGTFLGSMLFKR-GVSGIRVVTPGGKKQTSHSSNY 359 (389)
T ss_dssp HHHHHHHHHHT-TEEBSSSTT-SSEEEEE-TTCCTCC--S----SHHHHHHHHHHHT-TEESSEEEETSSCEEETTSS--
T ss_pred HHHHHHHHHHh-hhhhcCCCCCCeeEEEECccchhhc--c----chhhhHHHHHHhC-CcccceeeccCCCcccccCCCC
Confidence 33333332223 32222 2444444555555331100 0 1345677777776 55 3 44433321
Q ss_pred CCCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 012095 436 DDTCIRISYAA--SLTTLQAAVERIKKGLL 463 (471)
Q Consensus 436 ~~~~iRis~~~--~~e~i~~~~~~l~~~l~ 463 (471)
+-.|+-++.+. +.||++.++++|+++++
T Consensus 360 p~~Ylt~AsaiG~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 360 PCPYLTAASAIGMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp SSSEEEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 12577775443 99999999999999875
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-05 Score=76.54 Aligned_cols=328 Identities=11% Similarity=0.115 Sum_probs=184.3
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcC-CCCCC------CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEe-CChHHHH
Q 012095 97 VIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYT------PNAGTLELRSAICHKLKEENGLSYTPDQILVS-NGAKQSI 168 (471)
Q Consensus 97 ~i~l~~g~~~~~~p~~v~~a~~~~~~~~-~~~Y~------~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it-~G~~~al 168 (471)
+.+|+.|-... |+++.+.+++.+.+- -.+++ -..-..++.+...+.+.+.+++|-+ -+|++. .|++...
T Consensus 6 ~~nFsaGPa~l--p~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~~~a~~~lreLl~iPd~-Y~VlflqGGat~qf 82 (365)
T COG1932 6 VYNFSAGPAAL--PPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLRELLNIPDD-YKVLFLQGGATGQF 82 (365)
T ss_pred CCCCCCCcccC--CHHHHHHHHHHHhhhccCCcceeeeccccHHHHHHHHHHHHHHHHHhCCCCC-ceEEEEcCccHHHH
Confidence 56677765443 555555555544331 11111 1112245556666777778887633 355555 5678888
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChH-HHHHHcCCEEEEecCC-CCCCC--cCCHHHHHhhhccCCcEEEEcCCCCCcccC
Q 012095 169 LQAVLAVCSPGDEVIIPAPFWVSYP-EMARIADATPVILPTR-ISENF--LLDPKVLESKLTEKSRLLILCSPSNPTGSV 244 (471)
Q Consensus 169 ~~~~~~l~~~gd~Vlv~~p~y~~~~-~~~~~~G~~~~~v~~~-~~~~~--~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~ 244 (471)
..+...|+..+..-.+....|.... ..++..+-.+...... .+.+| -++++.+. +.++...|.+|.=.--+|+-
T Consensus 83 ~~~p~nLl~~~~~~yv~~g~Ws~~a~~eA~~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~~~~ayv~~~~NeTi~Gv~ 160 (365)
T COG1932 83 AMAPMNLLGKRGTDYVDTGAWSEFAIKEAKKVGKQPKLIDARIEEAGYGSIPDLSKWD--FSDNDAYVHFCWNETISGVE 160 (365)
T ss_pred HHHHHhhhcccCceeEeeeehhHhHHHHHHHhcccccccccceeccCccCCCChhhcc--cCCCccEEEEecCCcccceE
Confidence 8888888866533123344444332 2344444322211111 12222 33444333 33333334444333456776
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHH
Q 012095 245 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC 324 (471)
Q Consensus 245 ~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l 324 (471)
++. ...+ -++.++|+|-.-..+. ....+..+ .++..+-=|.+|..| ++.++.++++++++
T Consensus 161 v~~--~p~~------~~~~~~v~D~SS~ils----r~iDvsk~------dviyagaQKnlGpaG--ltvvIvr~~~l~r~ 220 (365)
T COG1932 161 VPE--LPDI------GSDGLLVADASSAILS----RPIDVSKY------DVIYAGAQKNLGPAG--LTVVIVRPDLLERA 220 (365)
T ss_pred ccC--CCCC------CCCceEEEecccHHhc----CCCChhHc------ceEEEehhhccCccc--eEEEEEcHHHHhcc
Confidence 661 1100 0137788886655431 12222222 266777889999888 89999999999887
Q ss_pred HHH-------------HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCee----eCCC
Q 012095 325 NKI-------------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM----SEPQ 387 (471)
Q Consensus 325 ~~~-------------~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~----~~p~ 387 (471)
... ...+.-+|+.++.+.....++... .+..++.+.++-+++.+.|++.+++- ++.. ....
T Consensus 221 ~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk-~~GGl~~~~~rn~~ka~~LY~~id~s-~fy~~~v~~~~R 298 (365)
T COG1932 221 ESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLK-SQGGLEALEARNQAKAQLLYDWIDKS-DFYRNLVAKANR 298 (365)
T ss_pred cccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHhC-Cccccccchhhc
Confidence 543 112223456666555555544311 12347788888899999999999885 3311 1334
Q ss_pred cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012095 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 388 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~ 465 (471)
+-|-+.+++.+. .-+..|...+.+ .|+...-|. ...+.+|+|+.. +.|+++.+++-++.+.++.
T Consensus 299 S~mnV~f~~~~~-----------~ld~~fv~eae~-~gl~~lkGh--r~vgGmRasiynA~~~e~veaL~~fm~~f~~~~ 364 (365)
T COG1932 299 SRMNVTFTLVDA-----------ELDKGFVAEAEA-AGLIYLKGH--RSVGGLRASIYNAVPLEDVEALTDFMDWFEETY 364 (365)
T ss_pred cceeEEEEcCcH-----------HHHHHHHHHHHH-cCCceeccc--cCCCceeeeeecCCCHHHHHHHHHHHHHHHHhh
Confidence 556677777643 134567776555 477777773 334569999987 7888888888887776543
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.9e-05 Score=74.68 Aligned_cols=324 Identities=15% Similarity=0.178 Sum_probs=184.5
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcC--C-----C-----CeEE-EcCCCC
Q 012095 123 EGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS--P-----G-----DEVI-IPAPFW 189 (471)
Q Consensus 123 ~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~--~-----g-----d~Vl-v~~p~y 189 (471)
.+...|--.++..-..+.+-..+.+.-|++...+.|+--.|+...++.+.-+--+ | | +-|+ +.+-+|
T Consensus 128 tn~~TYEiAPvF~lmE~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesH 207 (510)
T KOG0629|consen 128 TNMFTYEIAPVFVLMEEEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESH 207 (510)
T ss_pred CCCceEEecceEEeehHHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccch
Confidence 3455665555655566666666666678765557777666777777755443211 1 2 3344 567788
Q ss_pred CChHHHHHHcC---CEEEEecCCCCCCCcCCHHHHHhhhcc-C-----CcEEEEcCCCCCcccCCCHHHHHHHHHHHHhC
Q 012095 190 VSYPEMARIAD---ATPVILPTRISENFLLDPKVLESKLTE-K-----SRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 260 (471)
Q Consensus 190 ~~~~~~~~~~G---~~~~~v~~~~~~~~~ld~e~l~~~l~~-~-----~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~ 260 (471)
.+...++..+| -.++.|+.+.. ..+++++|++.|-+ + |-.+-.+....--|..=+ +..|+++|++|
T Consensus 208 YSi~kaAa~lg~gtd~c~~v~t~e~--Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDd---L~~iadiC~k~ 282 (510)
T KOG0629|consen 208 YSIKKAAAFLGLGTDHCIKVKTDER--GKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDD---LNGIADICEKH 282 (510)
T ss_pred hhHHHHHHHhccCCceeEEeccccc--CccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCc---HHHHHHHHHhc
Confidence 89999999998 67888888753 46999999998843 2 222223334556777777 99999999999
Q ss_pred CCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHH-HHHHHHHHHhcccC------
Q 012095 261 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-FVAACNKIQSQFTS------ 333 (471)
Q Consensus 261 ~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~-~i~~l~~~~~~~~~------ 333 (471)
++|+.+|.+|++...-...+... +.+-..---+..+..|.+| ..+..+..+...+ ++++.......+-+
T Consensus 283 -~lWmHvDAAwGGglLmS~k~R~k--l~Giera~SvtwnpHK~~g-aplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~Y 358 (510)
T KOG0629|consen 283 -KLWMHVDAAWGGGLLMSRKHRHK--LTGIERANSVTWNPHKLMG-APLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFY 358 (510)
T ss_pred -CEEEEeecccccccccChhhHhh--ccCccccCceeecHHHhhc-CcchhhHHHHHHHHHHHhhcccchhhhhccCcee
Confidence 99999999998733212211111 1111111134556789998 6677777665443 33333211100000
Q ss_pred ---------------CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCee-e--CCC-cceEEeE
Q 012095 334 ---------------GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-S--EPQ-GAFYLFI 394 (471)
Q Consensus 334 ---------------~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~-~--~p~-~g~~~~~ 394 (471)
....+-......+- .....++.++.+-+.++++.+.+++-+|... . .|+ .++..|.
T Consensus 359 dvS~DTgdK~iQCGRh~D~FKlWlmwkaK-----G~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw~ 433 (510)
T KOG0629|consen 359 DVSYDTGDKAIQCGRHVDVFKLWLMWKAK-----GTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEPEHVNVCFWY 433 (510)
T ss_pred ecccccccchhhcCccccHHHHHHHHHhc-----ccccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCCceEEEeecc
Confidence 01111111111111 1234677788888999999999999867433 2 255 3443443
Q ss_pred ecCCccCC-cc--cCCCC-CCCHHHHHHHHHHcCCEEEECCCCCC-CCCcEEEEeec---CHHHHHHHHHHHHHHH
Q 012095 395 DFSTYYGS-EA--EGFGK-IENSESLCRYLLDKAQVALVPGDAFG-DDTCIRISYAA---SLTTLQAAVERIKKGL 462 (471)
Q Consensus 395 ~~~~~~~~-~~--~~~~~-~~~~~~l~~~Ll~~~gV~v~pg~~f~-~~~~iRis~~~---~~e~i~~~~~~l~~~l 462 (471)
+|+.+.. +. +.... ..-+..+-..++++ |-...--.+.+ .++++|+-+.. +.++++-.++.|++.-
T Consensus 434 -vp~~lR~~~~~~e~~~rL~kVaPkIK~~Mm~~-Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerlg 507 (510)
T KOG0629|consen 434 -VPPSLRGWQENPERDSRLVKVAPKIKERMMKK-GTTMIGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERLG 507 (510)
T ss_pred -CchHhccCcccchhhhHHHhhCcHHHHHHHhc-cceeeEecccccccchhheecccchhhhhhHHHHHHHHHHhc
Confidence 3332211 11 10000 00122344555665 43222212222 25789998876 6678888888877653
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.8e-05 Score=75.18 Aligned_cols=215 Identities=18% Similarity=0.156 Sum_probs=120.4
Q ss_pred CHHHHHhhhcc-----CCcEEEEcCC-CCCcc-cCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCC-ccccccCC
Q 012095 217 DPKVLESKLTE-----KSRLLILCSP-SNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT-HTSFASLP 288 (471)
Q Consensus 217 d~e~l~~~l~~-----~~~~i~i~~p-~NPtG-~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~-~~~~~~~~ 288 (471)
.++++++.|.+ .+.+-+|..| +.-.| .-.|++..+.|.+++++| ++..|+||+..+.-..|.- ....+.++
T Consensus 254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh-~v~fivDEVQTGgGaTGk~WaHehw~l~ 332 (484)
T KOG1405|consen 254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKH-GVAFIVDEVQTGGGATGKFWAHEHWNLD 332 (484)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhc-CeEEEeeeeecCCCccCceeeehhcCCC
Confidence 45666666642 3445555555 66666 578999999999999999 9999999999864332210 01112222
Q ss_pred CCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 012095 289 GMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 368 (471)
Q Consensus 289 ~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r 368 (471)
. . .-+-+|||-| ++| ||....+=.-..-.++...|- ..+.-...+.+++.. ..-+.+.+..+..-
T Consensus 333 ~--P--pD~vTFSKK~-q~g---Gffh~~~frpn~pYrifNTWm--GdP~k~lll~~vv~~-----I~~~~Ll~n~~~vG 397 (484)
T KOG1405|consen 333 S--P--PDVVTFSKKF-QTG---GFFHDEEFRPNEPYRIFNTWM--GDPSKNLLLEEVVQE-----IKREDLLNNVAHVG 397 (484)
T ss_pred C--C--ccceehhhhh-hcC---ccccCcccCCCchHHHhhhhc--CChHHHHHHHHHHHH-----HhHHHHHHHHHHHH
Confidence 1 1 2356799999 577 876543322222333333332 233222233333332 11233444445555
Q ss_pred HHHHHHhcCC----CC-CeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEE-
Q 012095 369 DFLVKSFGEL----EG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRI- 442 (471)
Q Consensus 369 ~~l~~~L~~~----~g-~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRi- 442 (471)
+.+..+|.++ || +.-....|.| +-.++|..- --..|+..+ +-+||-+.-+ | +..||+
T Consensus 398 ~~l~~gL~~Lq~~~p~~~~~~RGrGTF-~a~d~ps~~-----------~Rdk~i~~~-~~nGv~~GGC---g-~~siRfR 460 (484)
T KOG1405|consen 398 KALLKGLLELQAKYPGKINNLRGRGTF-IAWDCPSGS-----------IRDKLILIA-RLNGVNLGGC---G-DKSIRFR 460 (484)
T ss_pred HHHHHHHHHHHHhCchhhhcccccceE-EEEeCCChH-----------HHHHHHHHH-HHcCceeccc---c-cceeeec
Confidence 5666655543 44 3333445555 555887541 234555544 4458765332 2 234555
Q ss_pred -EeecCHHHHHHHHHHHHHHHHh
Q 012095 443 -SYAASLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 443 -s~~~~~e~i~~~~~~l~~~l~~ 464 (471)
++.-.+...+-+++++.+.+.+
T Consensus 461 PsLvf~~~Ha~i~l~~~~k~l~~ 483 (484)
T KOG1405|consen 461 PSLVFRKHHADIFLDIFDKILAG 483 (484)
T ss_pred cceeehhhhHHHHHHHHHHHhcc
Confidence 5555778888899999888764
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00025 Score=69.95 Aligned_cols=315 Identities=14% Similarity=0.103 Sum_probs=169.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCC--------CCCcEEEeCChHHHHHHHHHHh------cCCC-----------C-eEE
Q 012095 130 PNAGTLELRSAICHKLKEENGLSY--------TPDQILVSNGAKQSILQAVLAV------CSPG-----------D-EVI 183 (471)
Q Consensus 130 ~~~G~~~lr~~ia~~~~~~~g~~~--------~~~~i~it~G~~~al~~~~~~l------~~~g-----------d-~Vl 183 (471)
..+-..||..-+.+|+.+..+.|- +.--|+.++.+...+-.++.+- .+.+ + .+.
T Consensus 107 ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y 186 (511)
T KOG0628|consen 107 SSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAY 186 (511)
T ss_pred cCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEE
Confidence 445678999999999999887641 1224555555444444444332 1122 2 245
Q ss_pred EcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCC-c----EEEEcCCCCCcccCCCHHHHHHHHHHHH
Q 012095 184 IPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKS-R----LLILCSPSNPTGSVYPKNLLDEIARIVA 258 (471)
Q Consensus 184 v~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~-~----~i~i~~p~NPtG~~~~~~~l~~i~~l~~ 258 (471)
..+-++++....+...|.+.+.++.+. +|.++.+.|++++.++. + .+++.+. -|-.+..-+++.+|.-+|+
T Consensus 187 ~SDqahssveka~~i~~VklR~l~td~--n~~mr~~~L~~AIe~D~arGlIPf~v~at~--GTT~~ca~D~l~elg~Vc~ 262 (511)
T KOG0628|consen 187 CSDQAHSSVEKACLIAGVKLRALPTDE--NFGMRGDTLRKAIEEDIARGLIPFFVCATL--GTTSSCAFDELEELGPVCR 262 (511)
T ss_pred ecCcccchHHHhHhhcceeEEEeeccc--CcCCCHHHHHHHHHHHHhCCCccEEEEEee--cCccccccccHHHhcchhh
Confidence 678899999999999999999999874 89999999999997532 2 2222222 2344556678999999999
Q ss_pred hCCCeEEEEccCCCccccCCCCccccccCC-CCCCceEEEecCCcccCccchhhee------------eEcCHHHHH-HH
Q 012095 259 KHPRLLVLSDEIYEHIIYAPATHTSFASLP-GMWERTLTVNGFSKAFAMTGWRLGY------------IAGPKHFVA-AC 324 (471)
Q Consensus 259 ~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~------------v~~~~~~i~-~l 324 (471)
++ ++|+.+|.+|.+-.+... .+..+. +...-.=+-...||.+ |.-+-+.- .-+++..++ ..
T Consensus 263 ~~-glWLHVDAAYAGsa~iCp---E~r~l~rGie~aDSfn~n~hK~~-~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~ 337 (511)
T KOG0628|consen 263 EE-GLWLHVDAAYAGSAFICP---EFRYLMRGIEYADSFNFNPHKWL-LVNFDCSPLWVKDGTKLSRAFNVDPLYLKHAY 337 (511)
T ss_pred hc-CEEEEeehhhccccccCH---HHHHHhhcchhhccccCChhhee-EEeeeeecceeecCceeeeeeecChHhhcchh
Confidence 99 999999999996443221 111110 0000000111123433 22211111 111111111 00
Q ss_pred HHHH-hcccCCCChHHH--HHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC-cceEEeEecCCcc
Q 012095 325 NKIQ-SQFTSGASSISQ--KAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-GAFYLFIDFSTYY 400 (471)
Q Consensus 325 ~~~~-~~~~~~~~~~~q--~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~-~g~~~~~~~~~~~ 400 (471)
.... ..-.... +++. .+....+....+.-+-+++..++..+..+.+.+.+.+-+.+++..+. =|+ +.+++.+.
T Consensus 338 ~~~~~Dyrhwqi-pl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~~lgL-vcFRlk~~- 414 (511)
T KOG0628|consen 338 QGSAPDYRHWQI-PLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVNKRILGL-VCFRLKGD- 414 (511)
T ss_pred hccCCCcccccc-ccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeecccccce-eEEeecCC-
Confidence 0000 0000000 0010 00111111000011222222333333334444444443456665443 344 55566532
Q ss_pred CCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec---CHHHHHHHHHHHHHHHHhhC
Q 012095 401 GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~---~~e~i~~~~~~l~~~l~~~~ 466 (471)
....+.|..++-....|.+.|.. +...-.+|++++. ++++++++...|.+...++.
T Consensus 415 ---------N~~ne~Ll~~in~~g~i~l~~~~-l~gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l~ 473 (511)
T KOG0628|consen 415 ---------NEINEALLNRLNSSGRIHLVPAS-LHGKFVLRFAVCSPLTNESDIDEAWKIIFEAADELF 473 (511)
T ss_pred ---------cHHHHHHHHHHHhcCcEEEEEee-ecceEEEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 12567888888777789888865 2223468999986 77899999999988877643
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0078 Score=56.60 Aligned_cols=336 Identities=12% Similarity=0.092 Sum_probs=186.9
Q ss_pred hcCCCeEEcCCCCCCCCChHHHHHHHHHHHHc--CCCCCCCCC-------CCHHHHHHHHHHHHHHhCCCCCCCcEEEeC
Q 012095 92 QAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE--GFTRYTPNA-------GTLELRSAICHKLKEENGLSYTPDQILVSN 162 (471)
Q Consensus 92 ~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~--~~~~Y~~~~-------G~~~lr~~ia~~~~~~~g~~~~~~~i~it~ 162 (471)
.+.++.|.|+.|...+. |....+.+.+.++. ....|+... +.......++.. -| ...++|.+.|
T Consensus 63 ~~d~~~iYlcGNSLGLm-PK~t~~~~~~eLDkWak~av~gH~~GkvPW~~~De~il~l~~~i----VG--A~e~EvavmN 135 (465)
T KOG3846|consen 63 SDDKPVIYLCGNSLGLM-PKSTRNSINAELDKWAKCAVEGHFKGKVPWVSIDEPILPLLAPI----VG--AQENEVAVMN 135 (465)
T ss_pred CCCCCeEEEeccccccC-chhhHhHHHHHHHHHHhhhhhcccccccceeecchhhhhhhhhh----cc--CCchhhhhHh
Confidence 45678899998887764 44444444444332 122233222 223333334444 34 3678999999
Q ss_pred ChHHHHHHHHHHhcCCC---CeEEEcCCCCCChH----HHHHHcCCEEE--EecCCC-CCCCcCCHHHHHhhhccC---C
Q 012095 163 GAKQSILQAVLAVCSPG---DEVIIPAPFWVSYP----EMARIADATPV--ILPTRI-SENFLLDPKVLESKLTEK---S 229 (471)
Q Consensus 163 G~~~al~~~~~~l~~~g---d~Vlv~~p~y~~~~----~~~~~~G~~~~--~v~~~~-~~~~~ld~e~l~~~l~~~---~ 229 (471)
+-+..+..++..+.+|- -.|+++.-.|++-. ..+++.|..+. .+-+.+ ++.-.+..+++.+.|..+ .
T Consensus 136 sLTvNlh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePREGEetlRteDILd~IEkngDei 215 (465)
T KOG3846|consen 136 SLTVNLHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPREGEETLRTEDILDTIEKNGDEI 215 (465)
T ss_pred hhhhHHHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEecccccccchhHHHHHHHHHhcCCeE
Confidence 99999999999998774 35888888887633 45677776542 111111 233346778888877543 3
Q ss_pred cEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccc-
Q 012095 230 RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG- 308 (471)
Q Consensus 230 ~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G- 308 (471)
.+|+++..+.-||+.++ +.+|- .+.+.+|++|=.|-++.. +. .++ .+ .+|+..+.+..--|.+. +|
T Consensus 216 A~v~fSGvqyYTGQ~Fd---i~aIT-~Agq~kgc~VGfDLAHAv----gN--VpL-~L-HdWgVDFACWCSYKYln-aGa 282 (465)
T KOG3846|consen 216 ALVCFSGVQYYTGQYFD---IGAIT-FAGQFKGCLVGFDLAHAV----GN--VPL-QL-HDWGVDFACWCSYKYLN-AGA 282 (465)
T ss_pred EEEEeecceeecccccc---hhhhh-hcccCCCcEechhhhhhh----cC--Cce-EE-eecCCceEEEeeecccc-cCC
Confidence 34556778999999999 77777 444445999999988874 11 111 11 12555566666667663 22
Q ss_pred hhheeeEcCHHH----HHHHHH---------------------HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHH
Q 012095 309 WRLGYIAGPKHF----VAACNK---------------------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (471)
Q Consensus 309 ~R~G~v~~~~~~----i~~l~~---------------------~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~ 363 (471)
-.+|-+...+.. ..++.. ....-.++|+.+...+....|+.- .+--+++++.+
T Consensus 283 GgIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F--~q~~~~~lRkr 360 (465)
T KOG3846|consen 283 GGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELF--AQFNINELRKR 360 (465)
T ss_pred CccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHH--HHhhHHHHhhh
Confidence 123333333222 122211 111123456666666666655531 12223344333
Q ss_pred HHHHHHHHHHHhcCCCCC-----------eeeCCC----cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEE
Q 012095 364 FRERRDFLVKSFGELEGV-----------KMSEPQ----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL 428 (471)
Q Consensus 364 ~~~~r~~l~~~L~~~~g~-----------~~~~p~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v 428 (471)
---...++...++...|. .+..|. .|--+.+.+.. +...++.+|-++ ||..
T Consensus 361 S~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fss-------------p~~~vfqeL~kr-Gv~~ 426 (465)
T KOG3846|consen 361 SLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSS-------------PTPKVFQELHKR-GVIG 426 (465)
T ss_pred hhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCcccccccceEEEEeCC-------------CchHHHHHHHHc-Ceec
Confidence 222222222222221122 122221 12223333321 345788887665 8875
Q ss_pred ECCCCCCCCCcEEEEeec---CHHHHHHHHHHHHHHHHhhCC
Q 012095 429 VPGDAFGDDTCIRISYAA---SLTTLQAAVERIKKGLLTLRP 467 (471)
Q Consensus 429 ~pg~~f~~~~~iRis~~~---~~e~i~~~~~~l~~~l~~~~~ 467 (471)
-. ..++.||++... +-.++..+++.|.+++..+.+
T Consensus 427 Dk----R~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d~~es 464 (465)
T KOG3846|consen 427 DK----RRPNVIRVAPVPLYNTFSDVYIFVNALNEAMDKLES 464 (465)
T ss_pred cc----cCCCceEeecchhhccHHHHHHHHHHHHHHHHHhhc
Confidence 33 246789999876 778999999999999877654
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.018 Score=59.46 Aligned_cols=300 Identities=17% Similarity=0.192 Sum_probs=166.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCcEEEe--CChH---HHHHHHHHHh-cCCC----CeEEEcCCCCCChHHHHHHcCC
Q 012095 132 AGTLELRSAICHKLKEENGLSYTPDQILVS--NGAK---QSILQAVLAV-CSPG----DEVIIPAPFWVSYPEMARIADA 201 (471)
Q Consensus 132 ~G~~~lr~~ia~~~~~~~g~~~~~~~i~it--~G~~---~al~~~~~~l-~~~g----d~Vlv~~p~y~~~~~~~~~~G~ 201 (471)
+|+.++-+.+.+.+-...|. +++.+- +|+. .+|. ++++. ...| ...++|.-.+......+..+|.
T Consensus 578 qGY~~lf~~Le~~Lc~iTG~----D~~s~QPNsGA~GEYaGL~-~IRaY~~~kge~hRnvClIPvSAHGTNPASA~Magm 652 (1001)
T KOG2040|consen 578 QGYQQLFTELEKDLCEITGF----DSFSLQPNSGAQGEYAGLR-VIRAYLESKGEGHRNVCLIPVSAHGTNPASAAMAGM 652 (1001)
T ss_pred hhHHHHHHHHHHHhheeecc----cceeecCCCCcccchhhHH-HHHHHHHhccCCcceeEEEeecccCCChhhHHhcCC
Confidence 78888888888888655442 455443 2322 2344 44443 3344 3467888888888888999999
Q ss_pred EEEEecCCCCCCCcCCHHHHHhhhcc---CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCC
Q 012095 202 TPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 278 (471)
Q Consensus 202 ~~~~v~~~~~~~~~ld~e~l~~~l~~---~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~ 278 (471)
+++.|.++..+ .+|..+|+++..+ +-.++.|..|+. .|+ + ++.+++++++.++| +--|..|.+--.-..+
T Consensus 653 kvvpV~~~~~G--~id~~dLk~kaekh~~~Laa~MvTYPST-~Gv-f-E~~i~d~cd~iHeh-GGQVYlDGANMNAqVG- 725 (1001)
T KOG2040|consen 653 KVVPVGCDANG--NIDMVDLKAKAEKHKDNLAALMVTYPST-HGV-F-EEGIDDICDIIHEH-GGQVYLDGANMNAQVG- 725 (1001)
T ss_pred EEEEeeccCCC--CccHHHHHHHHHHhhhhhheeEEecccc-ccc-c-cccHHHHHHHHHhc-CCEEEecCCCccceec-
Confidence 99999987544 5999999987754 345777877763 232 2 23499999999999 8899999775421111
Q ss_pred CCccccccCCCCCCceEEEecCCcccCcc----chhheeeEcCHHHHHHHHHH--H----------------hcccCCCC
Q 012095 279 ATHTSFASLPGMWERTLTVNGFSKAFAMT----GWRLGYIAGPKHFVAACNKI--Q----------------SQFTSGAS 336 (471)
Q Consensus 279 ~~~~~~~~~~~~~~~~i~~~S~SK~~g~~----G~R~G~v~~~~~~i~~l~~~--~----------------~~~~~~~~ 336 (471)
.. -+++.+..+.=--+.|+|.+| |-.+|=+...+.++..+-.. . .++.+..-
T Consensus 726 --lc----~pGd~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~I 799 (1001)
T KOG2040|consen 726 --LC----RPGDIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALI 799 (1001)
T ss_pred --cc----CCccccccceeecccceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCccee
Confidence 00 112222223333466777443 33344444444444433110 0 01111111
Q ss_pred hHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCc--ceEEeEecCCccCCcccCCCCCCCHH
Q 012095 337 SISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG--AFYLFIDFSTYYGSEAEGFGKIENSE 414 (471)
Q Consensus 337 ~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (471)
.+..++-.+.+. ...+.+.-+.-.-+.++|.++|+..-.+-+..+.+ +.=+.+++.+... .++ ..+.
T Consensus 800 LpISwaYikmMG-----~~GL~~as~~AiLNaNYMakRLe~hYkil~~~~~~~vaHEFIlD~r~fK~--~ag----ieav 868 (1001)
T KOG2040|consen 800 LPISWAYIKMMG-----SGGLKDASKIAILNANYMAKRLESHYKILFRGENGLVAHEFILDLRPFKK--TAG----IEAV 868 (1001)
T ss_pred ehhHHHHHHHhc-----ccccchhhHHHhhhhHHHHHHHhhccceeEecCCcceeeeeeeechhhcc--ccC----CcHH
Confidence 111122222222 12233333334456778888888752232222332 1112345543310 111 3678
Q ss_pred HHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012095 415 SLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGL 462 (471)
Q Consensus 415 ~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l 462 (471)
+++++|.+ +|....--+ |-..+.+-|-... +.++++++++++-.+-
T Consensus 869 DvAKRL~D-YgFHaPTms-wPV~gtLMIEPTESE~k~ElDRfcdAliSIr 916 (1001)
T KOG2040|consen 869 DVAKRLMD-YGFHAPTMS-WPVAGTLMIEPTESEDKAELDRFCDALISIR 916 (1001)
T ss_pred HHHHHHHh-ccCCCCccc-cccCCceEeccCccccHHHHHHHHHHHHHHH
Confidence 99999875 576543333 3345777776665 5578888888775543
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0016 Score=59.73 Aligned_cols=301 Identities=17% Similarity=0.190 Sum_probs=147.8
Q ss_pred HhCCCCCCCcEEEeCChHHHHHHHHHHhc--CCC-CeEEEcCCCCCChHHHHHHcCCEEEEecCCCCC-CCcCCHHHHHh
Q 012095 148 ENGLSYTPDQILVSNGAKQSILQAVLAVC--SPG-DEVIIPAPFWVSYPEMARIADATPVILPTRISE-NFLLDPKVLES 223 (471)
Q Consensus 148 ~~g~~~~~~~i~it~G~~~al~~~~~~l~--~~g-d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~-~~~ld~e~l~~ 223 (471)
..|...-.+.+++--.+-..+.+.+..+- +|. ..|+-+.-.-.+....+-.+|.+++.+.--.++ ...-|++.+++
T Consensus 69 l~glhav~nc~vvpl~tgmslslc~~s~r~krpkakyiiw~ridqks~~ksi~~agfepiiie~i~d~d~l~tdleav~~ 148 (432)
T KOG3843|consen 69 LAGLHAVANCFVVPLATGMSLSLCFLSLRHKRPKAKYIIWLRIDQKSCFKSIIHAGFEPIIIENILDGDELITDLEAVEA 148 (432)
T ss_pred HhhhhhhhceeEEeccccccHHHHHHHHhhcCCcccEEEEEecchHHHHHHHHhcCCCceeeeccccchHHHHhHHHHHH
Confidence 34554334444443222233444555553 344 445544433334444556789998777543332 33448888888
Q ss_pred hhcc-CCcEE-EEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCC
Q 012095 224 KLTE-KSRLL-ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 301 (471)
Q Consensus 224 ~l~~-~~~~i-~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 301 (471)
.+.+ ....| ++-+... .=..-+++.+++|+.+|..| |+.-|+..+|+.-. .. .-.-+..-.....-.-++.|+-
T Consensus 149 ~iee~g~dcilci~stts-cfapr~pd~leaiaaica~~-diphivnnayglqs-ee-~i~~iaa~~~~grida~vqsld 224 (432)
T KOG3843|consen 149 IIEELGEDCILCIHSTTS-CFAPRSPDNLEAIAAICAAH-DIPHIVNNAYGLQS-EE-CIHKIAAAAECGRIDAFVQSLD 224 (432)
T ss_pred HHHHhCCceEEEEeeccc-ccCCCCCchHHHHHHHHHcc-Cchhhhccccccch-HH-HHHHHHHHhhhccHHHHHHHhh
Confidence 8865 33433 3422211 11234677899999999999 99999999997411 10 0000011011112235688999
Q ss_pred cccCccchhheeeE--cCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCC-ChHHHHHHHHHHHHHHHHHHHHhcCC
Q 012095 302 KAFAMTGWRLGYIA--GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA-GGEVVSKMVKAFRERRDFLVKSFGEL 378 (471)
Q Consensus 302 K~~g~~G~R~G~v~--~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~-~~~~~~~~~~~~~~~r~~l~~~L~~~ 378 (471)
|.|-+|= -|.++ ..+.+++.+.+....-.+..++.. .....|..+.. ..+.+.+..+-+-+.|+.+...-+.+
T Consensus 225 knf~vpv--ggaiia~fk~n~iq~iak~ypgrasa~ps~d--llitll~~gqn~f~e~~~eqkemf~~l~~ki~~~ae~~ 300 (432)
T KOG3843|consen 225 KNFMVPV--GGAIIAAFKDNFIQEIAKMYPGRASASPSLD--LLITLLSLGQNAFKELFGEQKEMFLKLRNKIIKFAEAI 300 (432)
T ss_pred hcceeec--chhHhhHhHHHHHHHHHHhCCCccccCccHH--HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9995331 14444 366788877765433333344443 44444443211 11223334444444444444433333
Q ss_pred CCCeeeCCCcceEE--eE-ecCCccCCcccCCCCCCCHH-HHHHHHHHc--CCEEEECCCC------------CCCC---
Q 012095 379 EGVKMSEPQGAFYL--FI-DFSTYYGSEAEGFGKIENSE-SLCRYLLDK--AQVALVPGDA------------FGDD--- 437 (471)
Q Consensus 379 ~g~~~~~p~~g~~~--~~-~~~~~~~~~~~~~~~~~~~~-~l~~~Ll~~--~gV~v~pg~~------------f~~~--- 437 (471)
...-+..|+..+-+ .+ .+++.. ..+. .|-..|+.+ .|-.|+|.+. |+..
T Consensus 301 ~e~l~~~p~n~is~amtl~ti~~~k----------~kavt~~gsilfak~isgarvv~~~q~kttieg~ef~~f~sht~e 370 (432)
T KOG3843|consen 301 GECLLETPENEISLAMTLKTIDEAK----------DKAVTLFGSILFAKGISGARVVPLGQMKTTIEGCEFIGFGSHTNE 370 (432)
T ss_pred hhhhhcCCCchhhhhhhhccCChHH----------hhHHHHHHHHHHhccccCceEeeccccceeeeceEEeccccccCc
Confidence 11222234332221 11 222210 0122 233445554 1334555332 2211
Q ss_pred ---CcEEEEee--cCHHHHHHHHHHHHHHHHhhC
Q 012095 438 ---TCIRISYA--ASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 438 ---~~iRis~~--~~~e~i~~~~~~l~~~l~~~~ 466 (471)
+|+-++.+ -+..++++++.||.+.+..++
T Consensus 371 ~~~~yln~a~aigm~~hdld~~~~rl~~~~a~~~ 404 (432)
T KOG3843|consen 371 QHCAYLNAACAIGMKDHDLDEFFNRLDRCLAAFR 404 (432)
T ss_pred CchhHhhHHHhcCCcHhHHHHHHHHHHHHHHHHH
Confidence 24444433 377899999999988876554
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0066 Score=67.91 Aligned_cols=213 Identities=14% Similarity=0.183 Sum_probs=135.9
Q ss_pred HHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh------cCCCCeEEEc
Q 012095 113 IAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV------CSPGDEVIIP 185 (471)
Q Consensus 113 v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l------~~~gd~Vlv~ 185 (471)
+...+...+.+ ...-|.|+.|...+|..|+.++...++++++++||++.++-..++..+++.+ ++.+.+-.+|
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (1082)
T PLN02672 406 FLAYLASALKGLSYFPCEPPAGSKRFRNLIAGFMRIYHHIPLTPDNVVVFPSRAVAIENALRLFSPRLAIVDEHLTRWLP 485 (1082)
T ss_pred HHHHHHHHHccCCCCCCCCCccchHHHHHHHHHHHHhcCCcCCccceEEeccHHHHHHHHHHhhChHHHhhhhhhhccCC
Confidence 44555555554 3466889999999999999999999999999999999999999997777654 4455443333
Q ss_pred CCCCCChHHHHHHcC----------CEEEEecCCCCCCCcCCHHHHHhhhcc-CCcEEEEcCCCCCcccCCCHHHHHHHH
Q 012095 186 APFWVSYPEMARIAD----------ATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIA 254 (471)
Q Consensus 186 ~p~y~~~~~~~~~~G----------~~~~~v~~~~~~~~~ld~e~l~~~l~~-~~~~i~i~~p~NPtG~~~~~~~l~~i~ 254 (471)
. .| .......| ++++.-|. .-+.+.+.+++ ++++++..--+ +-..+-...+.|.
T Consensus 486 ~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 550 (1082)
T PLN02672 486 K-KW---LTSLAIENATSDSKSDDVITVIEAPR--------QSDLVIELIKKLKPQVVVTGMAD---FEMRTSTAFEHLL 550 (1082)
T ss_pred H-HH---HhHhhhhcccccCccCCeEEEEeCCC--------cchHHHHHHHhCCCeEEEEeccc---hhhhhHHHHHHHH
Confidence 2 22 22222222 22332222 11234444432 67877743222 2233455688999
Q ss_pred HHHHhCCCeEEEEccC-CCccccCCCCccccccCC--CCCCceEEEecCCcccCccchhheeeEc-CHHHHHHHHHHHhc
Q 012095 255 RIVAKHPRLLVLSDEI-YEHIIYAPATHTSFASLP--GMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQ 330 (471)
Q Consensus 255 ~l~~~~~~~~ii~De~-y~~~~~~~~~~~~~~~~~--~~~~~~i~~~S~SK~~g~~G~R~G~v~~-~~~~i~~l~~~~~~ 330 (471)
+.+++. |.+++.|.. |.++...+....-+..+. ....+..++.++-|.--.+.+-+.+++. ++.+...+.+....
T Consensus 551 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (1082)
T PLN02672 551 NVTAEI-GARLFLDISDHLELSSLPGSNGVLKYLAGHPLPSHAAIICGLVKNQVYSDLEVAFVISENEAVLKALSKTGEV 629 (1082)
T ss_pred HHHHhh-CcEEEEehhhheeeccCCCcccHHHHhcCCCCCcchhHhhhhhhccccccceEEEEecCcHHHHHHHHHHHHh
Confidence 999999 999999987 555554333332222221 1234556777788877668899999885 55677777766655
Q ss_pred ccCCCChHHHH
Q 012095 331 FTSGASSISQK 341 (471)
Q Consensus 331 ~~~~~~~~~q~ 341 (471)
.......++|.
T Consensus 630 ~~~~~~~~~~~ 640 (1082)
T PLN02672 630 LEGRTAIISQF 640 (1082)
T ss_pred hccchHHHHHH
Confidence 55556666664
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.12 Score=53.68 Aligned_cols=313 Identities=15% Similarity=0.205 Sum_probs=161.1
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCC-----CCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHH
Q 012095 100 LAAGEPDFDTPVLIAEAGINAIREGFTRYTPNA-----GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (471)
Q Consensus 100 l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~-----G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~ 174 (471)
.+.|.-....|+.+.+.+.+.. ...++|+|.+ |-.|-.--....+....|.++.. .-++--|+..+-..++..
T Consensus 123 IGmGYyn~~vP~~I~RNilenp-~W~TqYTPYQ~EIsQGRLEsllNyQTmi~dlTGL~~aN-ASLLDEgTAaaEAm~l~~ 200 (1001)
T KOG2040|consen 123 IGMGYYNTHVPAVILRNILENP-GWYTQYTPYQAEISQGRLESLLNYQTMITDLTGLPMAN-ASLLDEGTAAAEAMALCN 200 (1001)
T ss_pred hccccccccCcHHHHHHhhhCC-cceeccCCCchhhhhhhHHHHhhhHHhhhhccCCcccc-hhhhccchhHHHHHHHHH
Confidence 3445444445776665554421 1247787753 22111111112223334655432 222333333222222222
Q ss_pred hcCCCCeEEEcCCCCCChHHHHHHc--CCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHH
Q 012095 175 VCSPGDEVIIPAPFWVSYPEMARIA--DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 252 (471)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~~~~~~~--G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~ 252 (471)
-..++...++..-+|+.....++.. +..+. +.+ .|+++...- .++...+++-.|.- -|.+.+ ..+
T Consensus 201 ~~~krkk~vvd~~~hpqtlsV~~TRa~~~~i~-v~~-------~~~~~~~~s-~~~v~gvlvQYP~t-~G~i~d---~~e 267 (1001)
T KOG2040|consen 201 RINKRKKFVVDSNCHPQTLSVVKTRAKGFGIK-VVV-------SDIKEADYS-SKDVSGVLVQYPDT-EGSVLD---FDE 267 (1001)
T ss_pred hhcccceEEecCCCCcchhhhhhcccccccee-EEe-------cCHHHhhcc-ccceeEEEEEcCCC-CCcccC---HHH
Confidence 2456677999999999988876532 22211 111 133333221 23455666666654 688888 777
Q ss_pred HHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEec---CCcccCccchhheeeEcCHHHHHHH-----
Q 012095 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG---FSKAFAMTGWRLGYIAGPKHFVAAC----- 324 (471)
Q Consensus 253 i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S---~SK~~g~~G~R~G~v~~~~~~i~~l----- 324 (471)
+++.+++. +.++++-- ++ -...+..-++.++-.|.++| |.--+|-.|--.||..+.+++.+.+
T Consensus 268 l~~~a~~~-~s~vv~at---DL-----LaLtiLrpPgefGaDIavGSsQRFGVPlGYGGPHAaFfAv~~~l~R~mPGRii 338 (1001)
T KOG2040|consen 268 LVELAHAN-GSLVVMAT---DL-----LALTILRPPGEFGADIAVGSSQRFGVPLGYGGPHAAFFAVSESLVRMMPGRII 338 (1001)
T ss_pred HHHHhhcc-CceEEEee---hh-----hHHHccCChhhcCceeeeccccccCccccCCCchHHHHHHHHHHHhhCCCceE
Confidence 88888887 66655321 11 01122333445666788887 3333443344444544444444322
Q ss_pred ----------------H----HHHh-cccCCCChHHHH-----HHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCC
Q 012095 325 ----------------N----KIQS-QFTSGASSISQK-----AGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL 378 (471)
Q Consensus 325 ----------------~----~~~~-~~~~~~~~~~q~-----aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 378 (471)
+ .+++ -.+++..+ +|+ ++..++-. ....++++.++.....-++..+|++.
T Consensus 339 GvtkD~~gk~a~RLALQTREQHIrRDKATSNICT-AQALLANmaAmyaiYH---Gp~gL~~IArrvh~~T~~l~~~l~~a 414 (1001)
T KOG2040|consen 339 GVTKDALGKEAYRLALQTREQHIRRDKATSNICT-AQALLANMAAMYAIYH---GPHGLKEIARRVHNLTLILAEGLKNA 414 (1001)
T ss_pred eeeecccccHHHHHHHHHHHHHhhhhccchhhhH-HHHHHHHHHHHHhhhc---CcHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1 1111 11221211 221 12222222 35668888888888888899999876
Q ss_pred CCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHH
Q 012095 379 EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVE 456 (471)
Q Consensus 379 ~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~ 456 (471)
|-++.. -.||=.+++.-. .+.+++.++..++ +|-++- ..++.+-+++.. +++|++..+.
T Consensus 415 -ghel~~--k~fFDTLkI~~~-----------~s~~~~l~rA~~~-~iNlr~----~ed~tigvslDETv~~~DvddLl~ 475 (1001)
T KOG2040|consen 415 -GHELQH--KPFFDTLKIRCG-----------CSAEEVLDRAAKR-QINLRL----VEDGTIGVSLDETVTEKDVDDLLW 475 (1001)
T ss_pred -chhhcc--ccccceEEEEec-----------CcHHHHHHHHHhh-cCceEE----eecCceEEeecccccHHHHHHHHH
Confidence 655442 237755555321 1567788777665 454332 135678888876 7788888887
Q ss_pred HHH
Q 012095 457 RIK 459 (471)
Q Consensus 457 ~l~ 459 (471)
.+.
T Consensus 476 vf~ 478 (1001)
T KOG2040|consen 476 VFN 478 (1001)
T ss_pred HHc
Confidence 764
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.31 Score=45.68 Aligned_cols=330 Identities=12% Similarity=0.107 Sum_probs=177.8
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHc-CCC-------CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHH
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFT-------RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~~-~~~-------~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~ 166 (471)
..+++|+.|---+ |..+...+.+-+-+ ... ...+ .-...+.+.-...+.+.+.+|-+-+=+++-.|++.
T Consensus 6 ~~vvnFaaGPAkl--p~~VL~e~qkdl~n~~g~GisV~EmSHRs-k~f~kii~~tes~lreLlniPdn~~vlf~QGGGt~ 82 (370)
T KOG2790|consen 6 ERVVNFAAGPAKL--PESVLLEAQKDLLNFNGSGISVMEMSHRS-KDFAKIINDTESLLRELLNIPDNYKVLFLQGGGTG 82 (370)
T ss_pred cceeecCCCcccC--CHHHHHHHHHHhhccCCCcceEEEecccc-hhHHHHHHHHHHHHHHHHcCCCceeEEEEeCCCcc
Confidence 3578888876444 44444444433322 100 1111 11234445555566666776533334455566777
Q ss_pred HHHHHHHHhc--CCC---CeEEEcCCCCCChHHHHHHcCCEEEEecCCCCC-CCcCCHHHHHhhhccCCcEEEEcCCCCC
Q 012095 167 SILQAVLAVC--SPG---DEVIIPAPFWVSYPEMARIADATPVILPTRISE-NFLLDPKVLESKLTEKSRLLILCSPSNP 240 (471)
Q Consensus 167 al~~~~~~l~--~~g---d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~-~~~ld~e~l~~~l~~~~~~i~i~~p~NP 240 (471)
-+..+...|+ +-| |.|+.-..+--.+.++-+..-...+..+..... +--+|.+.++. +++.+.+++|.----
T Consensus 83 qFaAv~lNL~glK~g~~AdYiVTGsWS~KA~~EAkk~~~~~~V~~~~k~y~ygkvPd~~~w~~--~~da~yvyyCaNETV 160 (370)
T KOG2790|consen 83 QFAAVPLNLIGLKHGRCADYVVTGSWSAKAAEEAKKYGTPNIVIPKLKSYTYGKVPDPSTWEL--NPDASYVYYCANETV 160 (370)
T ss_pred cccccchhhhccccCCccceEEeccccHHHHHHHHhhCCceEEeccccccccCcCCChhhccc--CCCccEEEEecCcee
Confidence 7776666665 334 677766555555556555544445555543322 11245555543 345567777654334
Q ss_pred cccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHH
Q 012095 241 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 320 (471)
Q Consensus 241 tG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~ 320 (471)
-|+-++.-- +-.-+ +.+++.|-.-..+. .+..+.. .-+++..--|.+|.+| +-.++..+++
T Consensus 161 HGVEf~~~P------~~~~~-~~vlVaDmSSnflS----rpvDvsk------~gvi~aGAQKN~G~aG--~Tvvivr~dl 221 (370)
T KOG2790|consen 161 HGVEFDFIP------VNDPK-GAVLVADMSSNFLS----RPVDVSK------FGVIFAGAQKNVGPAG--VTVVIVRKDL 221 (370)
T ss_pred eceecCCCC------CCCCC-CceEEEecccchhc----CCccchh------cceEEeccccccCccc--cEEEEEehhh
Confidence 465554110 11123 78888886654432 1122222 2266777889999777 4445667777
Q ss_pred HHHHHHHH------------hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeee--CC
Q 012095 321 VAACNKIQ------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS--EP 386 (471)
Q Consensus 321 i~~l~~~~------------~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~--~p 386 (471)
+.....+. ....-++|.++.+++--.++.-. ....+..+.+.-.+..+.+++.+.+..|+-.. .|
T Consensus 222 lg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il-~~GGl~a~e~~n~~KskllYd~iD~s~gfy~cpVe~ 300 (370)
T KOG2790|consen 222 LGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWIL-EKGGLAAMEKLNQEKSKLLYDAIDNSNGFYRCPVEP 300 (370)
T ss_pred hcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHH-hcccHHHHHHHHHHHHHHHHHHHHhcCCeEEcccch
Confidence 66543221 11122356666555444443210 12336667777788899999999886564322 22
Q ss_pred --CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012095 387 --QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGL 462 (471)
Q Consensus 387 --~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l 462 (471)
.+-|-+.+++.+. ....+|.+...++ +..-.-|. ..-|.+|-|+-. +-++.++++.-++++.
T Consensus 301 ~~RS~MNV~Fri~~d-----------~Le~eFLkeA~~~-~mv~LKGh--RSVGGiRASlYNAisv~~~q~L~~~m~~F~ 366 (370)
T KOG2790|consen 301 SVRSRMNVPFRIEKD-----------ELEAEFLKEAAKE-HMVQLKGH--RSVGGIRASLYNAISVEEVQKLAAFMKEFQ 366 (370)
T ss_pred hhhhhcccceeecch-----------HHHHHHHHHHHHh-hhhccccc--cccccchhhhhccccHHHHHHHHHHHHHHH
Confidence 2335455566432 2456677766666 34333332 234679999876 8888888888777765
Q ss_pred H
Q 012095 463 L 463 (471)
Q Consensus 463 ~ 463 (471)
+
T Consensus 367 k 367 (370)
T KOG2790|consen 367 K 367 (370)
T ss_pred H
Confidence 4
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=88.81 E-value=21 Score=33.60 Aligned_cols=166 Identities=16% Similarity=0.138 Sum_probs=100.9
Q ss_pred HHHHHHHhcCCCeEEcCCCCCCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCC
Q 012095 85 DQATALAQAGVSVIRLAAGEPDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNG 163 (471)
Q Consensus 85 ~~~~~~~~~g~~~i~l~~g~~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G 163 (471)
+.+..+.+.|-++|-|+.=..+.-. -|.+.++-.+++.++.+ .....+.+.+.- +....+ =|++|--
T Consensus 20 ~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~-------~~~~~~~~~~~r-~~~~~p----~ilm~Y~ 87 (250)
T PLN02591 20 EALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTT-------LDSVISMLKEVA-PQLSCP----IVLFTYY 87 (250)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCC-------HHHHHHHHHHHh-cCCCCC----EEEEecc
Confidence 3455566788888877665543222 36788888888876432 133444443322 111211 1333321
Q ss_pred h---HHHHHHHHHHhcCCC-CeEEEcCCCCC---ChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcC
Q 012095 164 A---KQSILQAVLAVCSPG-DEVIIPAPFWV---SYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCS 236 (471)
Q Consensus 164 ~---~~al~~~~~~l~~~g-d~Vlv~~p~y~---~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~ 236 (471)
. .-++...+..+.+-| |.|++++-.+. .+...++..|...+.+-.. + .+.+.+++........||+.+
T Consensus 88 N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~P--t---t~~~ri~~ia~~~~gFIY~Vs 162 (250)
T PLN02591 88 NPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTP--T---TPTERMKAIAEASEGFVYLVS 162 (250)
T ss_pred cHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCC--C---CCHHHHHHHHHhCCCcEEEee
Confidence 1 234555666666777 89999986654 2345667888887665422 1 355677777666677888766
Q ss_pred CCCCcccCCC-HHHHHHHHHHHHhCCCeEEEE
Q 012095 237 PSNPTGSVYP-KNLLDEIARIVAKHPRLLVLS 267 (471)
Q Consensus 237 p~NPtG~~~~-~~~l~~i~~l~~~~~~~~ii~ 267 (471)
-..-||..-. .+.++++++.++++.++.|++
T Consensus 163 ~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~v 194 (250)
T PLN02591 163 STGVTGARASVSGRVESLLQELKEVTDKPVAV 194 (250)
T ss_pred CCCCcCCCcCCchhHHHHHHHHHhcCCCceEE
Confidence 6667886433 566888888888876787775
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=86.00 E-value=32 Score=32.60 Aligned_cols=166 Identities=22% Similarity=0.193 Sum_probs=96.9
Q ss_pred HHHHHHHhcCCCeEEcCCCCCCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCC
Q 012095 85 DQATALAQAGVSVIRLAAGEPDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNG 163 (471)
Q Consensus 85 ~~~~~~~~~g~~~i~l~~g~~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G 163 (471)
+....+.+.|-++|-++.=..+.-. -|.+.+|..+++.++.+ ...+-+.+.+.-.+... --+++.+=
T Consensus 28 ~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~-------~~~~~~~~~~ir~~~~~-----~pivlm~Y 95 (259)
T PF00290_consen 28 EILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFT-------LEKIFELVKEIRKKEPD-----IPIVLMTY 95 (259)
T ss_dssp HHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHCTS-----SEEEEEE-
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCC-------HHHHHHHHHHHhccCCC-----CCEEEEee
Confidence 4455666778888777654433222 36788888888876432 23444444443212111 23433332
Q ss_pred hH----HHHHHHHHHhcCCC-CeEEEcCCCCCC---hHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEc
Q 012095 164 AK----QSILQAVLAVCSPG-DEVIIPAPFWVS---YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILC 235 (471)
Q Consensus 164 ~~----~al~~~~~~l~~~g-d~Vlv~~p~y~~---~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~ 235 (471)
.. -++...+..+.+-| |.|++|+--+.. +...++..|..++.+=.. + -..+.+++........||+.
T Consensus 96 ~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p--~---t~~~Ri~~i~~~a~gFiY~v 170 (259)
T PF00290_consen 96 YNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAP--T---TPEERIKKIAKQASGFIYLV 170 (259)
T ss_dssp HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEET--T---S-HHHHHHHHHH-SSEEEEE
T ss_pred ccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECC--C---CCHHHHHHHHHhCCcEEEee
Confidence 22 23334444444556 899999966643 345667889887665432 2 26677777766667888887
Q ss_pred CCCCCcccCCC-HHHHHHHHHHHHhCCCeEEEE
Q 012095 236 SPSNPTGSVYP-KNLLDEIARIVAKHPRLLVLS 267 (471)
Q Consensus 236 ~p~NPtG~~~~-~~~l~~i~~l~~~~~~~~ii~ 267 (471)
+-...||.--. ..++++.++.++++.++.|++
T Consensus 171 s~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~v 203 (259)
T PF00290_consen 171 SRMGVTGSRTELPDELKEFIKRIKKHTDLPVAV 203 (259)
T ss_dssp SSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEE
T ss_pred ccCCCCCCcccchHHHHHHHHHHHhhcCcceEE
Confidence 77778997543 467899999999885677764
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.18 E-value=7.8 Score=35.39 Aligned_cols=99 Identities=20% Similarity=0.246 Sum_probs=67.2
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEE----E-c-CC-CCC----C---hHHHHHHcCCEEEEecCCCCCCCcCCHHHHH
Q 012095 157 QILVSNGAKQSILQAVLAVCSPGDEVI----I-P-AP-FWV----S---YPEMARIADATPVILPTRISENFLLDPKVLE 222 (471)
Q Consensus 157 ~i~it~G~~~al~~~~~~l~~~gd~Vl----v-~-~p-~y~----~---~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~ 222 (471)
-+.+-+|+....+++..++ +.|-.|. + | ++ +|. + ....++..|..++......+ ..-..++|.
T Consensus 3 ~~aL~SGGKDS~~Al~~a~-~~G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~--~e~eve~L~ 79 (223)
T COG2102 3 VIALYSGGKDSFYALYLAL-EEGHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGE--EEREVEELK 79 (223)
T ss_pred EEEEEecCcHHHHHHHHHH-HcCCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCcc--chhhHHHHH
Confidence 3677889999988666554 4553322 1 1 12 111 1 22456788999888876542 224678888
Q ss_pred hhhcc-CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEE
Q 012095 223 SKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 266 (471)
Q Consensus 223 ~~l~~-~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii 266 (471)
+++.. +...|+ +|.+++..++..+-.+|++. ++.++
T Consensus 80 ~~l~~l~~d~iv-------~GaI~s~yqk~rve~lc~~l-Gl~~~ 116 (223)
T COG2102 80 EALRRLKVDGIV-------AGAIASEYQKERVERLCEEL-GLKVY 116 (223)
T ss_pred HHHHhCcccEEE-------EchhhhHHHHHHHHHHHHHh-CCEEe
Confidence 87754 445666 79999999999999999998 88766
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=83.54 E-value=41 Score=31.92 Aligned_cols=167 Identities=14% Similarity=0.167 Sum_probs=98.8
Q ss_pred HHHHHHHhcCCCeEEcCCCCCCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCC
Q 012095 85 DQATALAQAGVSVIRLAAGEPDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNG 163 (471)
Q Consensus 85 ~~~~~~~~~g~~~i~l~~g~~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G 163 (471)
+.+..+.+.|-++|-|+.=..+.-. -|.+.+|..+++.++.+ ...+.+.+.+. .+....+ =+++|--
T Consensus 33 ~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~-------~~~~~~~~~~~-r~~~~~p----~vlm~Y~ 100 (263)
T CHL00200 33 KALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGIN-------LNKILSILSEV-NGEIKAP----IVIFTYY 100 (263)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCC-------HHHHHHHHHHH-hcCCCCC----EEEEecc
Confidence 3455666788888777655433222 36788888888876432 13333434333 1112222 1333322
Q ss_pred h---HHHHHHHHHHhcCCC-CeEEEcCCCCCCh---HHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcC
Q 012095 164 A---KQSILQAVLAVCSPG-DEVIIPAPFWVSY---PEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCS 236 (471)
Q Consensus 164 ~---~~al~~~~~~l~~~g-d~Vlv~~p~y~~~---~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~ 236 (471)
. .-++...+..+.+.| |.|++++-.+... ...++..|..++.+=.. + -+.+.++...+.....||+.+
T Consensus 101 N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~P--t---T~~eri~~i~~~a~gFIY~vS 175 (263)
T CHL00200 101 NPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAP--T---SSKSRIQKIARAAPGCIYLVS 175 (263)
T ss_pred cHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECC--C---CCHHHHHHHHHhCCCcEEEEc
Confidence 1 223444566666677 8999998665443 35667889887665432 2 256777776665555788766
Q ss_pred CCCCcccCC-CHHHHHHHHHHHHhCCCeEEEEc
Q 012095 237 PSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSD 268 (471)
Q Consensus 237 p~NPtG~~~-~~~~l~~i~~l~~~~~~~~ii~D 268 (471)
-...||..- -.+.++++++.++++.+..|.+|
T Consensus 176 ~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vG 208 (263)
T CHL00200 176 TTGVTGLKTELDKKLKKLIETIKKMTNKPIILG 208 (263)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHhcCCCEEEE
Confidence 556788742 23557888888887757777765
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 471 | ||||
| 1j32_A | 388 | Aspartate Aminotransferase From Phormidium Lapideum | 5e-92 | ||
| 1bkg_A | 385 | Aspartate Aminotransferase From Thermus Thermophilu | 8e-80 | ||
| 1b5o_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Sin | 4e-79 | ||
| 1bjw_A | 382 | Aspartate Aminotransferase From Thermus Thermophilu | 4e-79 | ||
| 1gck_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Dou | 1e-78 | ||
| 1gc3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 2e-77 | ||
| 5bj3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 2e-77 | ||
| 1dju_A | 388 | Crystal Structure Of Aromatic Aminotransferase From | 2e-70 | ||
| 1gde_A | 389 | Crystal Structure Of Pyrococcus Protein A-1 E-form | 4e-70 | ||
| 1o4s_A | 389 | Crystal Structure Of Aspartate Aminotransferase (Tm | 5e-67 | ||
| 2z61_A | 370 | Crystal Structure Of Mj0684 From Methanococcus Jann | 2e-47 | ||
| 1xi9_A | 406 | Alanine Aminotransferase From Pyrococcus Furiosus P | 7e-44 | ||
| 3e2z_B | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 5e-43 | ||
| 3e2f_A | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 3e-42 | ||
| 1u08_A | 386 | Crystal Structure And Reactivity Of Ybdl From Esche | 1e-39 | ||
| 1w7n_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 2e-39 | ||
| 3fvs_A | 422 | Human Kynurenine Aminotransferase I In Complex With | 1e-38 | ||
| 1w7l_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 1e-38 | ||
| 2o0r_A | 411 | The Three-Dimensional Structure Of N-Succinyldiamin | 4e-37 | ||
| 1v2d_A | 381 | Crystal Structure Of T.Th Hb8 Glutamine Aminotransf | 4e-33 | ||
| 1yiy_A | 429 | Aedes Aegypti Kynurenine Aminotransferase Length = | 2e-30 | ||
| 1yiz_A | 429 | Aedes Aegypti Kynurenine Aminotrasferase Length = 4 | 9e-30 | ||
| 2x5d_A | 412 | Crystal Structure Of A Probable Aminotransferase Fr | 2e-28 | ||
| 2gb3_A | 409 | Crystal Structure Of Aspartate Aminotransferase (Tm | 1e-26 | ||
| 1bw0_A | 416 | Crystal Structure Of Tyrosine Aminotransferase From | 1e-24 | ||
| 3ele_A | 398 | Crystal Structure Of Amino Transferase (rer07020700 | 4e-23 | ||
| 3b46_A | 447 | Crystal Structure Of Bna3p, A Putative Kynurenine A | 3e-22 | ||
| 3dyd_A | 427 | Human Tyrosine Aminotransferase Length = 427 | 6e-21 | ||
| 3pdx_A | 402 | Crystal Structural Of Mouse Tyrosine Aminotransfera | 1e-20 | ||
| 3h14_A | 391 | Crystal Structure Of A Putative Aminotransferase Fr | 4e-20 | ||
| 1c7n_A | 399 | Crystal Structure Of Cystalysin From Treponema Dent | 5e-20 | ||
| 2o1b_A | 404 | Structure Of Aminotransferase From Staphylococcus A | 2e-18 | ||
| 4dgt_A | 391 | Crystal Structure Of Plp-Bound Putative Aminotransf | 2e-18 | ||
| 3l8a_A | 421 | Crystal Structure Of Metc From Streptococcus Mutans | 1e-17 | ||
| 3b1c_A | 392 | Crystal Structure Of Betac-S Lyase From Streptococc | 2e-17 | ||
| 3t32_B | 383 | Crystal Structure Of A Putative C-S Lyase From Baci | 1e-16 | ||
| 2dou_A | 376 | Probable N-Succinyldiaminopimelate Aminotransferase | 4e-16 | ||
| 2zc0_A | 407 | Crystal Structure Of An Archaeal Alanine:glyoxylate | 5e-16 | ||
| 3asa_A | 400 | Crystal Structure Of Apo-Ll-Diaminopimelate Aminotr | 6e-16 | ||
| 3nra_A | 407 | Crystal Structure Of An Aspartate Aminotransferase | 4e-15 | ||
| 3jtx_A | 396 | Crystal Structure Of Aminotransferase (np_283882.1) | 3e-14 | ||
| 3op7_A | 375 | Crystal Structure Of A Plp-Dependent Aminotransfera | 5e-13 | ||
| 3qgu_A | 449 | L,L-Diaminopimelate Aminotransferase From Chalmydom | 9e-13 | ||
| 3cq5_A | 369 | Histidinol-Phosphate Aminotransferase From Coryneba | 1e-12 | ||
| 3cq4_A | 376 | Histidinol-Phosphate Aminotransferase From Coryneba | 2e-12 | ||
| 1iax_A | 428 | Crystal Structure Of Acc Synthase Complexed With Pl | 5e-12 | ||
| 3fdb_A | 377 | Crystal Structure Of A Putative Plp-Dependent Beta- | 6e-12 | ||
| 3cq6_A | 369 | Histidinol-Phosphate Aminotransferase From Coryneba | 6e-12 | ||
| 3f6t_A | 533 | Crystal Structure Of Aspartate Aminotransferase (E. | 2e-11 | ||
| 2zy5_A | 546 | R487a Mutant Of L-Aspartate Beta-Decarboxylase Leng | 5e-11 | ||
| 2zy3_A | 546 | Dodecameric L-Aspartate Beta-Decarboxylase Length = | 5e-11 | ||
| 3aov_A | 448 | Crystal Structure Of Pyrococcus Horikoshii Kynureni | 1e-10 | ||
| 1x0m_A | 403 | A Human Kynurenine Aminotransferase Ii Homologue Fr | 1e-10 | ||
| 4fl0_A | 456 | Crystal Structure Of Ald1 From Arabidopsis Thaliana | 1e-10 | ||
| 3dzz_A | 391 | Crystal Structure Of A Putative Plp-Dependent Amino | 4e-10 | ||
| 2z1z_A | 432 | Crystal Structure Of Ll-diaminopimelate Aminotransf | 4e-10 | ||
| 3fdd_A | 533 | The Crystal Structure Of The Pseudomonas Dacunhae A | 5e-10 | ||
| 3eia_A | 432 | Crystal Structure Of K270q Variant Of Ll-Diaminopim | 1e-09 | ||
| 3ei8_A | 432 | Crystal Structure Of K270n Variant Of Ll-Diaminopim | 1e-09 | ||
| 1fg3_A | 356 | Crystal Structure Of L-Histidinol Phosphate Aminotr | 1e-09 | ||
| 3euc_A | 367 | Crystal Structure Of Histidinol-Phosphate Aminotran | 2e-09 | ||
| 1gew_A | 356 | Crystal Structure Of Histidinol-Phosphate Aminotran | 2e-09 | ||
| 2zy2_A | 544 | Dodecameric L-Aspartate Beta-Decarboxylase Length = | 4e-09 | ||
| 3ezs_A | 376 | Crystal Structure Of Aminotransferase Aspb (Np_2074 | 5e-09 | ||
| 2z20_A | 432 | Crystal Structure Of Ll-diaminopimelate Aminotransf | 6e-09 | ||
| 3tcm_A | 500 | Crystal Structure Of Alanine Aminotransferase From | 9e-09 | ||
| 1ynu_A | 473 | Crystal Structure Of Apple Acc Synthase In Complex | 1e-08 | ||
| 1m7y_A | 435 | Crystal Structure Of Apple Acc Synthase In Complex | 1e-08 | ||
| 1b8g_A | 429 | 1-aminocyclopropane-1-carboxylate Synthase Length = | 1e-08 | ||
| 4gdy_A | 439 | Kynurenine Aminotransferase Ii Inhibitors Length = | 2e-08 | ||
| 4ge7_A | 439 | Kynurenine Aminotransferase Ii Inhibitors Length = | 2e-08 | ||
| 3ihj_A | 498 | Human Alanine Aminotransferase 2 In Complex With Pl | 3e-08 | ||
| 2xh1_A | 425 | Crystal Structure Of Human Kat Ii-Inhibitor Complex | 4e-08 | ||
| 2r2n_A | 425 | The Crystal Structure Of Human Kynurenine Aminotran | 4e-08 | ||
| 3ue8_A | 439 | Kynurenine Aminotransferase Ii Inhibitors Length = | 4e-08 | ||
| 3piu_A | 410 | High-Resolution Structure Of Native Malus Domestica | 6e-08 | ||
| 2qlr_A | 425 | Crystal Structure Of Human Kynurenine Aminotransfer | 2e-07 | ||
| 2vgz_A | 427 | Crystal Structure Of Human Kynurenine Aminotransfer | 2e-07 | ||
| 2f8j_A | 347 | Crystal Structure Of Histidinol-phosphate Aminotran | 2e-07 | ||
| 1uu1_A | 335 | Complex Of Histidinol-Phosphate Aminotransferase (H | 3e-07 | ||
| 3hdo_A | 360 | Crystal Structure Of A Histidinol-Phosphate Aminotr | 7e-07 | ||
| 1d2f_A | 390 | X-Ray Structure Of Maly From Escherichia Coli: A Py | 1e-06 | ||
| 1h1c_A | 335 | Histidinol-Phosphate Aminotransferase (Hisc) From T | 1e-06 | ||
| 3get_A | 365 | Crystal Structure Of Putative Histidinol-Phosphate | 3e-06 | ||
| 3ffh_A | 363 | The Crystal Structure Of Histidinol-phosphate Amino | 3e-06 | ||
| 3fkd_A | 350 | The Crystal Structure Of L-Threonine-O-3-Phosphate | 3e-06 | ||
| 1vp4_A | 425 | Crystal Structure Of A Putative Aminotransferase (T | 9e-06 | ||
| 3ly1_A | 354 | Crystal Structure Of Putative Histidinol-Phosphate | 1e-05 | ||
| 3p1t_A | 337 | Crystal Structure Of A Putative Aminotransferase (B | 1e-05 | ||
| 3ftb_A | 361 | The Crystal Structure Of The Histidinol-Phosphate A | 4e-05 | ||
| 2c7t_A | 418 | Crystal Structure Of The Plp-Bound Form Of Btrr, A | 2e-04 | ||
| 1lkc_A | 364 | Crystal Structure Of L-Threonine-O-3-Phosphate Deca | 4e-04 |
| >pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum Length = 388 | Back alignment and structure |
|
| >pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With Maleate Length = 385 | Back alignment and structure |
|
| >pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus Length = 382 | Back alignment and structure |
|
| >pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double Mutant 1 Complexed With Aspartate Length = 385 | Back alignment and structure |
|
| >pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 2 Complexed With Tryptophan Length = 385 | Back alignment and structure |
|
| >pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From Pyrococcus Horikoshii Ot3 Length = 388 | Back alignment and structure |
|
| >pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form Length = 389 | Back alignment and structure |
|
| >pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255) From Thermotoga Maritima At 1.90 A Resolution Length = 389 | Back alignment and structure |
|
| >pdb|2Z61|A Chain A, Crystal Structure Of Mj0684 From Methanococcus Jannaschii Reveals Its Similarity In The Active Site To Kynurenine Aminotransferases Length = 370 | Back alignment and structure |
|
| >pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus Pfu-1397077-001 Length = 406 | Back alignment and structure |
|
| >pdb|3E2Z|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii In Complex With Kynurenine Length = 410 | Back alignment and structure |
|
| >pdb|3E2F|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii, Plp-Bound Form Length = 410 | Back alignment and structure |
|
| >pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia Coli Identify A Methionine Aminotransferase Function. Length = 386 | Back alignment and structure |
|
| >pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I In Pmp Form Length = 422 | Back alignment and structure |
|
| >pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With Glycerol Length = 422 | Back alignment and structure |
|
| >pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I Length = 422 | Back alignment and structure |
|
| >pdb|2O0R|A Chain A, The Three-Dimensional Structure Of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis Length = 411 | Back alignment and structure |
|
| >pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase Length = 381 | Back alignment and structure |
|
| >pdb|1YIY|A Chain A, Aedes Aegypti Kynurenine Aminotransferase Length = 429 | Back alignment and structure |
|
| >pdb|1YIZ|A Chain A, Aedes Aegypti Kynurenine Aminotrasferase Length = 429 | Back alignment and structure |
|
| >pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From Pseudomonas Aeruginosa Length = 412 | Back alignment and structure |
|
| >pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698) From Thermotoga Maritima At 2.50 A Resolution Length = 409 | Back alignment and structure |
|
| >pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From Trypanosoma Cruzi Length = 416 | Back alignment and structure |
|
| >pdb|3ELE|A Chain A, Crystal Structure Of Amino Transferase (rer070207001803) From Eubacterium Rectale At 2.10 A Resolution Length = 398 | Back alignment and structure |
|
| >pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine Aminotransferase From Saccharomyces Cerevisiae Length = 447 | Back alignment and structure |
|
| >pdb|3DYD|A Chain A, Human Tyrosine Aminotransferase Length = 427 | Back alignment and structure |
|
| >pdb|3PDX|A Chain A, Crystal Structural Of Mouse Tyrosine Aminotransferase Length = 402 | Back alignment and structure |
|
| >pdb|3H14|A Chain A, Crystal Structure Of A Putative Aminotransferase From Silicibacter Pomeroyi Length = 391 | Back alignment and structure |
|
| >pdb|1C7N|A Chain A, Crystal Structure Of Cystalysin From Treponema Denticola Contains A Pyridoxal 5'-Phosphate Cofactor Length = 399 | Back alignment and structure |
|
| >pdb|2O1B|A Chain A, Structure Of Aminotransferase From Staphylococcus Aureus Length = 404 | Back alignment and structure |
|
| >pdb|4DGT|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase From Clostridium Difficile 630 Crystallized With Magnesium Formate Length = 391 | Back alignment and structure |
|
| >pdb|3L8A|A Chain A, Crystal Structure Of Metc From Streptococcus Mutans Length = 421 | Back alignment and structure |
|
| >pdb|3B1C|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus Anginosus: Internal Aldimine Form Length = 392 | Back alignment and structure |
|
| >pdb|2DOU|A Chain A, Probable N-Succinyldiaminopimelate Aminotransferase (Ttha0342) From Thermus Thermophilus Hb8 Length = 376 | Back alignment and structure |
|
| >pdb|2ZC0|A Chain A, Crystal Structure Of An Archaeal Alanine:glyoxylate Aminotransferase Length = 407 | Back alignment and structure |
|
| >pdb|3ASA|A Chain A, Crystal Structure Of Apo-Ll-Diaminopimelate Aminotransferase From Chlamydia Trachomatis Length = 400 | Back alignment and structure |
|
| >pdb|3NRA|A Chain A, Crystal Structure Of An Aspartate Aminotransferase (Yp_354942.1) From Rhodobacter Sphaeroides 2.4.1 At 2.15 A Resolution Length = 407 | Back alignment and structure |
|
| >pdb|3JTX|A Chain A, Crystal Structure Of Aminotransferase (np_283882.1) From Neisseria Meningitidis Z2491 At 1.91 A Resolution Length = 396 | Back alignment and structure |
|
| >pdb|3OP7|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase (Zp_03625122.1) From Streptococcus Suis 89-1591 At 1.70 A Resolution Length = 375 | Back alignment and structure |
|
| >pdb|3QGU|A Chain A, L,L-Diaminopimelate Aminotransferase From Chalmydomonas Reinhardtii Length = 449 | Back alignment and structure |
|
| >pdb|3CQ5|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum In Complex With Pmp Length = 369 | Back alignment and structure |
|
| >pdb|3CQ4|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum Length = 376 | Back alignment and structure |
|
| >pdb|1IAX|A Chain A, Crystal Structure Of Acc Synthase Complexed With Plp Length = 428 | Back alignment and structure |
|
| >pdb|3FDB|A Chain A, Crystal Structure Of A Putative Plp-Dependent Beta-Cystathionase (Aecd, Dip1736) From Corynebacterium Diphtheriae At 1.99 A Resolution Length = 377 | Back alignment and structure |
|
| >pdb|3CQ6|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum Holo-Form (Plp Covalently Bound ) Length = 369 | Back alignment and structure |
|
| >pdb|3F6T|A Chain A, Crystal Structure Of Aspartate Aminotransferase (E.C. 2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus Ncfm At 2.15 A Resolution Length = 533 | Back alignment and structure |
|
| >pdb|2ZY5|A Chain A, R487a Mutant Of L-Aspartate Beta-Decarboxylase Length = 546 | Back alignment and structure |
|
| >pdb|2ZY3|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase Length = 546 | Back alignment and structure |
|
| >pdb|3AOV|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine Aminotransferase In Complex With Plp Length = 448 | Back alignment and structure |
|
| >pdb|1X0M|A Chain A, A Human Kynurenine Aminotransferase Ii Homologue From Pyrococcus Horikoshii Ot3 Length = 403 | Back alignment and structure |
|
| >pdb|4FL0|A Chain A, Crystal Structure Of Ald1 From Arabidopsis Thaliana Length = 456 | Back alignment and structure |
|
| >pdb|3DZZ|A Chain A, Crystal Structure Of A Putative Plp-Dependent Aminotransferase (Lbul_1103) From Lactobacillus Delbrueckii Subsp. At 1.61 A Resolution Length = 391 | Back alignment and structure |
|
| >pdb|2Z1Z|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With L-malate Ion Length = 432 | Back alignment and structure |
|
| >pdb|3FDD|A Chain A, The Crystal Structure Of The Pseudomonas Dacunhae Aspartate-Beta- Decarboxylase Reveals A Novel Oligomeric Assembly For A Pyridoxal-5- Phosphate Dependent Enzyme Length = 533 | Back alignment and structure |
|
| >pdb|3EIA|A Chain A, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With L-Glu: External Aldimine Form Length = 432 | Back alignment and structure |
|
| >pdb|3EI8|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With Ll-Dap: External Aldimine Form Length = 432 | Back alignment and structure |
|
| >pdb|1FG3|A Chain A, Crystal Structure Of L-Histidinol Phosphate Aminotransferase Complexed With L-Histidinol Length = 356 | Back alignment and structure |
|
| >pdb|3EUC|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase (Yp_297314.1) From Ralstonia Eutropha Jmp134 At 2.05 A Resolution Length = 367 | Back alignment and structure |
|
| >pdb|1GEW|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase Complexed With Pyridoxal 5'-Phosphate Length = 356 | Back alignment and structure |
|
| >pdb|2ZY2|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase Length = 544 | Back alignment and structure |
|
| >pdb|3EZS|A Chain A, Crystal Structure Of Aminotransferase Aspb (Np_207418.1) From Helicobacter Pylori 26695 At 2.19 A Resolution Length = 376 | Back alignment and structure |
|
| >pdb|2Z20|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase From Arabidopsis Thaliana Length = 432 | Back alignment and structure |
|
| >pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum Vulgare Length = 500 | Back alignment and structure |
|
| >pdb|1YNU|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L-Vinylglycine Length = 473 | Back alignment and structure |
|
| >pdb|1M7Y|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L- Aminoethoxyvinylglycine Length = 435 | Back alignment and structure |
|
| >pdb|1B8G|A Chain A, 1-aminocyclopropane-1-carboxylate Synthase Length = 429 | Back alignment and structure |
|
| >pdb|4GDY|A Chain A, Kynurenine Aminotransferase Ii Inhibitors Length = 439 | Back alignment and structure |
|
| >pdb|4GE7|A Chain A, Kynurenine Aminotransferase Ii Inhibitors Length = 439 | Back alignment and structure |
|
| >pdb|3IHJ|A Chain A, Human Alanine Aminotransferase 2 In Complex With Plp Length = 498 | Back alignment and structure |
|
| >pdb|2XH1|A Chain A, Crystal Structure Of Human Kat Ii-Inhibitor Complex Length = 425 | Back alignment and structure |
|
| >pdb|2R2N|A Chain A, The Crystal Structure Of Human Kynurenine Aminotransferase Ii In Complex With Kynurenine Length = 425 | Back alignment and structure |
|
| >pdb|3UE8|A Chain A, Kynurenine Aminotransferase Ii Inhibitors Length = 439 | Back alignment and structure |
|
| >pdb|2QLR|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase Ii Length = 425 | Back alignment and structure |
|
| >pdb|2VGZ|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase Ii Length = 427 | Back alignment and structure |
|
| >pdb|2F8J|A Chain A, Crystal Structure Of Histidinol-phosphate Aminotransferase (ec 2.6.1.9) (imidazole Acetol-phosphate Transferase) (tm1040) From Thermotoga Maritima At 2.40 A Resolution Length = 347 | Back alignment and structure |
|
| >pdb|1UU1|A Chain A, Complex Of Histidinol-Phosphate Aminotransferase (Hisc) From Thermotoga Maritima (Apo-Form) Length = 335 | Back alignment and structure |
|
| >pdb|3HDO|A Chain A, Crystal Structure Of A Histidinol-Phosphate Aminotransferase From Geobacter Metallireducens Length = 360 | Back alignment and structure |
|
| >pdb|1D2F|A Chain A, X-Ray Structure Of Maly From Escherichia Coli: A Pyridoxal-5'- Phosphate-Dependent Enzyme Acting As A Modulator In Mal Gene Expression Length = 390 | Back alignment and structure |
|
| >pdb|1H1C|A Chain A, Histidinol-Phosphate Aminotransferase (Hisc) From Thermotoga Maritima Length = 335 | Back alignment and structure |
|
| >pdb|3GET|A Chain A, Crystal Structure Of Putative Histidinol-Phosphate Aminotransferase (Np_281508.1) From Campylobacter Jejuni At 2.01 A Resolution Length = 365 | Back alignment and structure |
|
| >pdb|3FFH|A Chain A, The Crystal Structure Of Histidinol-phosphate Aminotransferase From Listeria Innocua Clip11262. Length = 363 | Back alignment and structure |
|
| >pdb|3FKD|A Chain A, The Crystal Structure Of L-Threonine-O-3-Phosphate Decarboxylase From Porphyromonas Gingivalis Length = 350 | Back alignment and structure |
|
| >pdb|1VP4|A Chain A, Crystal Structure Of A Putative Aminotransferase (Tm1131) From Thermotoga Maritima Msb8 At 1.82 A Resolution Length = 425 | Back alignment and structure |
|
| >pdb|3LY1|A Chain A, Crystal Structure Of Putative Histidinol-Phosphate Aminotransferase (Yp_050345.1) From Erwinia Carotovora Atroseptica Scri1043 At 1.80 A Resolution Length = 354 | Back alignment and structure |
|
| >pdb|3P1T|A Chain A, Crystal Structure Of A Putative Aminotransferase (Bpsl1724) From Burkholderia Pseudomallei K96243 At 2.60 A Resolution Length = 337 | Back alignment and structure |
|
| >pdb|3FTB|A Chain A, The Crystal Structure Of The Histidinol-Phosphate Aminotransferase From Clostridium Acetobutylicum Length = 361 | Back alignment and structure |
|
| >pdb|2C7T|A Chain A, Crystal Structure Of The Plp-Bound Form Of Btrr, A Dual Functional Aminotransferase Involved In Butirosin Biosynthesis. Length = 418 | Back alignment and structure |
|
| >pdb|1LKC|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate Decarboxylase From Salmonella Enterica Length = 364 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Length = 388 | Back alignment and structure |
|---|
Score = 609 bits (1572), Expect = 0.0
Identities = 178/399 (44%), Positives = 244/399 (61%), Gaps = 15/399 (3%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
L+ RV +V PS T+ I +A A+ G+ V +AGEPDF+TP I EA A+ +G TR
Sbjct: 3 LAARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTR 62
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
Y P AG LR AI KL+ +NGL Y D ILV+NG KQSI +LA+ PGDEVIIPAP
Sbjct: 63 YGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAP 122
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
FWVSYPEM ++A+ TPVILPT + F + P+ + +T K++LL+ +PSNPTG VY
Sbjct: 123 FWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTP 182
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 306
+ + IA+ VA L VLSDEIYE I+Y A H S + P +ER++ +GF+K +AM
Sbjct: 183 DEVRAIAQ-VAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAM 241
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
TGWR+G++AGP V A KIQ TS + +Q +AA + V +M+ AF E
Sbjct: 242 TGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYE---NSQDCVQEMLAAFAE 298
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
RR +++ + + G++ +P GAFY+F + +S C LLD+ QV
Sbjct: 299 RRRYMLDALNAMPGLECPKPDGAFYMFPSIA----------KTGRSSLDFCSELLDQHQV 348
Query: 427 ALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTL 465
A VPG AFG D CIR+SYA L T++ +ER++K L +
Sbjct: 349 ATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFLHGI 387
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 Length = 389 | Back alignment and structure |
|---|
Score = 595 bits (1537), Expect = 0.0
Identities = 142/393 (36%), Positives = 227/393 (57%), Gaps = 22/393 (5%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
+S R++ + SKT+ + +A AL + G VI L AGEPDF TP + E + +++G +
Sbjct: 14 VSRRISEIPISKTMELDAKAKALIKKGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVK 73
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YT G ELR I ++ E +PDQ++V+NGAKQ++ A +A+ PGDEVI+ +P
Sbjct: 74 YTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSP 133
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
WVSY +A T ++ T +S+NF + +E L K++ +++ SP+NPTG VY +
Sbjct: 134 VWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRR 193
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307
L+ + R +AK ++SDE+Y+ ++Y TS + ++R + +NGFSK+ +MT
Sbjct: 194 EFLEGLVR-LAKKRNFYIISDEVYDSLVYTDE-FTSILDVSEGFDRIVYINGFSKSHSMT 251
Query: 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367
GWR+GY+ + A +KIQS TS ++++Q A + AL S MV+ F+ER
Sbjct: 252 GWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKAL------EVDNSYMVQTFKER 305
Query: 368 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 427
++F+V+ ++ GVK EP+GAFYLF + C LL++ +VA
Sbjct: 306 KNFVVERLKKM-GVKFVEPEGAFYLFFKVR-------------GDDVKFCERLLEEKKVA 351
Query: 428 LVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 460
LVPG AF +R+S+A S+ L A++RI+
Sbjct: 352 LVPGSAFLKPGFVRLSFATSIERLTEALDRIED 384
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Length = 389 | Back alignment and structure |
|---|
Score = 587 bits (1517), Expect = 0.0
Identities = 161/403 (39%), Positives = 224/403 (55%), Gaps = 20/403 (4%)
Query: 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT 126
+LS R+ V S+ + D +A VI L GEPDFDTP I E A+ +G T
Sbjct: 2 ALSDRLELVSASEIRKLFD----IAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKGLT 57
Query: 127 RYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIP 185
Y PN G LELR AI KLK++NG+ P +I+V GA Q+ L + A G+EV+IP
Sbjct: 58 HYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIP 117
Query: 186 APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245
P +VSY +A PV +PT + F L+ L+ +T+K+R LI+ SP NPTG+V
Sbjct: 118 TPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVL 177
Query: 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305
K L+EIA V +H L+V+SDE+YEH IY A H S ASL GM+ERT+TVNGFSK FA
Sbjct: 178 TKKDLEEIADFVVEHD-LIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFA 236
Query: 306 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 365
MTGWRLG++A P + K Q + + Q A AL + V +M K +
Sbjct: 237 MTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKAL-KDERSWKAVEEMRKEYD 295
Query: 366 ERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 425
RR + K E+ G+ +P+GAFY+F S+ +L +A+
Sbjct: 296 RRRKLVWKRLNEM-GLPTVKPKGAFYIFPRIRDT----------GLTSKKFSELMLKEAR 344
Query: 426 VALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLTLR 466
VA+VPG AFG + +RISYA + L+ A++R+++ L +
Sbjct: 345 VAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLKERK 387
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* Length = 385 | Back alignment and structure |
|---|
Score = 586 bits (1514), Expect = 0.0
Identities = 164/395 (41%), Positives = 231/395 (58%), Gaps = 16/395 (4%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
LS RV A+KPS TVA+ +A L + GV ++ L AGEPDFDTP + EA A+ +G T+
Sbjct: 4 LSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKTK 63
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
Y P AG ELR A+ K + ENGLS TP++ +V+ G Q++ A+ PGDEVI+ +P
Sbjct: 64 YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSP 123
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+WVSYPEM R A V + T E F+ DP+ + +T +++ L++ SP+NPTG+VYPK
Sbjct: 124 YWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPK 183
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307
+L+ +AR+ +H ++SDEIYEH++Y H S + E TLTVNG +KAFAMT
Sbjct: 184 EVLEALARLAVEHD-FYLVSDEIYEHLLYEGE-HFSPGRVAP--EHTLTVNGAAKAFAMT 239
Query: 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367
GWR+GY GPK + A + Q T+ +I+Q A + AL A V +A+R R
Sbjct: 240 GWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRR 299
Query: 368 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 427
RD L++ L G+K P GAFY+ +D S + LL+ A VA
Sbjct: 300 RDLLLEGLTAL-GLKAVRPSGAFYVLMDTSPIAP----------DEVRAAERLLE-AGVA 347
Query: 428 LVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGL 462
+VPG F +R+SYA S L+ A+ER + L
Sbjct: 348 VVPGTDFAAFGHVRLSYATSEENLRKALERFARVL 382
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} Length = 370 | Back alignment and structure |
|---|
Score = 545 bits (1407), Expect = 0.0
Identities = 127/397 (31%), Positives = 191/397 (48%), Gaps = 32/397 (8%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
LS R+ + + + I A L G VI L GEPDF+TP I + GI +++EG T
Sbjct: 2 LSKRLLNFESFEVMDILALAQKLESEGKKVIHLEIGEPDFNTPKPIVDEGIKSLKEGKTH 61
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YT + G LELR I K++ PD I+++ G+ + A+ ++ GDEV+I P
Sbjct: 62 YTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNP 121
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+ Y R A PV + LE L++K++ +I+ SPSNP G V +
Sbjct: 122 CYPCYKNFIRFLGAKPVFCD--------FTVESLEEALSDKTKAIIINSPSNPLGEVIDR 173
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307
EI ++ ++SDEIY ++Y S E+T+ +NGFSK +AMT
Sbjct: 174 ----EIYEFAYEN-IPYIISDEIYNGLVYE-GKCYSAIEFDENLEKTILINGFSKLYAMT 227
Query: 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367
GWR+GY+ + A K+Q A +ISQ A + A ++ M+K F R
Sbjct: 228 GWRIGYVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKE--TEREINSMIKEFDRR 285
Query: 368 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 427
R ++K + G +++ P GA+Y+F + E+ LL + VA
Sbjct: 286 RRLVLKYVKDF-GWEVNNPIGAYYVFPNIG-------------EDGREFAYKLLKEKFVA 331
Query: 428 LVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGL 462
L PG FG IRISYA S ++ +ERIK+ L
Sbjct: 332 LTPGIGFGSKGKNYIRISYANSYENIKEGLERIKEFL 368
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Length = 407 | Back alignment and structure |
|---|
Score = 536 bits (1384), Expect = 0.0
Identities = 87/413 (21%), Positives = 156/413 (37%), Gaps = 28/413 (6%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSV----IRLAAGEPDFD--TPVLIAEAGINAI 121
P + V + G + + + G+ D TP
Sbjct: 8 FKKLGTDNAPGQEVRQSAAGLEALIRGAPIEGRPVDFSHGDVDAHEPTPGAFDLFSAGVQ 67
Query: 122 REGFTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGD 180
G YT G L +R + +L G D ++++ G + ++ AV A + GD
Sbjct: 68 SGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGD 127
Query: 181 EVIIPAPFWVSYPEMARIADATPVILP----TRISENFLLDPKVLESKLTEKSRLLILCS 236
+V I P + + ++ + V + + LD LE +R+ + +
Sbjct: 128 KVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSN 187
Query: 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTL 295
P+NP G VY + +IA + A++ V++D++Y + YA A++T + + E +
Sbjct: 188 PNNPAGVVYSAEEIGQIAALAARYG-ATVIADQLYSRLRYAGASYTHLRAEAAVDAENVV 246
Query: 296 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE 355
T+ G SK +++G+RLG G + +A K+Q+ + A+ SQ
Sbjct: 247 TIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFD---EAPG 303
Query: 356 VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSES 415
+ + + RD L+ EGV PQ YLF
Sbjct: 304 WMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLP----------KLAVAPAE 353
Query: 416 LCRYLLDKAQVALVPGDAFGDDT--CIRISYAASLTTLQAAVERIKKGLLTLR 466
+ L +A V + PG F T +R++++ AA RI + R
Sbjct: 354 FVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVERYR 406
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409 | Back alignment and structure |
|---|
Score = 519 bits (1338), Expect = 0.0
Identities = 102/410 (24%), Positives = 182/410 (44%), Gaps = 33/410 (8%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
S RV + S + A + GV + L G+PD TP + E I +
Sbjct: 16 FSDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQPDLKTPEVFFER-IYENKPEVVY 74
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
Y+ +AG ELR A K + P+ +LV+NG ++IL + + +PGDE+++ P
Sbjct: 75 YSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEP 134
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
F+ +Y A+IA + + R+ E F + P+ LES + E+++ ++L +P NPTG VY K
Sbjct: 135 FYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFINERTKGIVLSNPCNPTGVVYGK 193
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307
+ + + I +H L ++ DE+Y I++ S S+ ++ + ++ SK F+
Sbjct: 194 DEMRYLVEIAERHG-LFLIVDEVYSEIVFR-GEFASALSI--ESDKVVVIDSVSKKFSAC 249
Query: 308 GWRLGY-IAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
G R+G I + ++ K+ Q + Q V L + + +RE
Sbjct: 250 GARVGCLITRNEELISHAMKLA-QGRLAPPLLEQIGSVGLLN---LDDSFFDFVRETYRE 305
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL----- 421
R + ++K E + ++P GAFY+ + +E++E R++L
Sbjct: 306 RVETVLKKLEEHGLKRFTKPSGAFYITAELP------------VEDAEEFARWMLTDFNM 353
Query: 422 DKAQVALVPGDAFGDDT-----CIRISYAASLTTLQAAVERIKKGLLTLR 466
D + P F IRI+ L A++ + +GL
Sbjct: 354 DGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKMFC 403
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 Length = 406 | Back alignment and structure |
|---|
Score = 503 bits (1298), Expect = e-178
Identities = 116/409 (28%), Positives = 200/409 (48%), Gaps = 26/409 (6%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP---DFDTPVLIAEAGINAIREG 124
S R +V+ + + A L + G+ VIRL G+P DF P + EA AI+EG
Sbjct: 12 ASKRALSVEYA-IRDVVLPARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEG 70
Query: 125 FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVII 184
Y + G ELR AI + K +NG+ TPD + V+ +++ A+ PGDE+++
Sbjct: 71 HNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILV 130
Query: 185 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 244
P P + Y + + PV T E++ D + K+T++++ + + +P+NPTG++
Sbjct: 131 PGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGAL 190
Query: 245 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 304
Y K L+EI I ++ + V+SDEIY+ + Y H S SL + +NG SK +
Sbjct: 191 YDKKTLEEILNIAGEY-EIPVISDEIYDLMTYE-GEHISPGSLTKD-VPVIVMNGLSKVY 247
Query: 305 AMTGWRLGYIA--GPKHFVAACNKI---QSQFTSGASSISQKAGVAALGLGYAGGEVVSK 359
TGWRLGY+ P++ ++ + ++ ++ +Q A +A L + + +
Sbjct: 248 FATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLT---GPMDYLKE 304
Query: 360 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRY 419
+K +ERRD++ K E+ G+ ++PQGAFY+F +N +
Sbjct: 305 YMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVG---------PWKNDKEFVLD 355
Query: 420 LLDKAQVALVPGDAFGDDT--CIRISYAASLTTLQAAVERIKKGLLTLR 466
+L A V V G FG+ R + + L+ A++R +K +
Sbjct: 356 VLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFMKERL 404
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Length = 391 | Back alignment and structure |
|---|
Score = 487 bits (1255), Expect = e-172
Identities = 98/406 (24%), Positives = 168/406 (41%), Gaps = 25/406 (6%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
+ +AV P + + + A +AG +I + G+P P EA ++
Sbjct: 4 KNSSRSAVDPFIVMDVMEAARRAEEAGRRIIHMEVGQPGTGAPRGAVEALAKSLETDALG 63
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YT G LR I E G+ P +++++ G+ L A A+ GD V I AP
Sbjct: 64 YTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAP 123
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+ SY ++ R PV LPT P L++ SP+NPTG++
Sbjct: 124 GYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL---DLAGLMVASPANPTGTMLDH 180
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307
+ + +SDEIY I Y + + + +N FSK F+MT
Sbjct: 181 AAMGALIEAAQAQ-GASFISDEIYHGIEYEAKAV----TALELTDECYVINSFSKYFSMT 235
Query: 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367
GWR+G++ P+ V +I A SQ A +AAL + + ++
Sbjct: 236 GWRVGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAAL----DCDAELQANLDVYKAN 291
Query: 368 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 427
R +++ + +++ P GAFY++ D S ++S + +L+KA VA
Sbjct: 292 RKLMLERLPKAGFTRIAPPDGAFYVYADVSDL----------TDDSRAFAAEILEKAGVA 341
Query: 428 LVPGDAFGDDT---CIRISYAASLTTLQAAVERIKKGLLTLRPGVP 470
+ PG F + +R SYA + ++ ++R++ + G
Sbjct: 342 VTPGLDFDPERGAGTLRFSYARATADIEEGLDRLEAFMQARGEGHH 387
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437 | Back alignment and structure |
|---|
Score = 487 bits (1255), Expect = e-171
Identities = 69/437 (15%), Positives = 123/437 (28%), Gaps = 48/437 (10%)
Query: 60 EEVQVDVSLSPRVNAVKPSKTVAITDQATALAQA-GVSVIRLAAGEPDFDTPVLIAEAGI 118
E++ + + + + + T L +A G R+ G P P + E I
Sbjct: 8 EKLIREKQNELHIKDLGMASIRDLVALVTNLEKATGTKFCRMEMGVPGLPAPQIGIETEI 67
Query: 119 NAIREGFT-RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS 177
+REG Y G EL+ K + + + G+ Q + L
Sbjct: 68 QKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANR 127
Query: 178 ----PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLI 233
+ P + RI L K+ T + +I
Sbjct: 128 THKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLREKLESYLQTGQFCSII 187
Query: 234 LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY-----APATHTSFASLP 288
+P+NPT L I + KH ++V+ D Y + + P S+
Sbjct: 188 YSNPNNPTWQCMTDEELRIIGELATKH-DVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVA 246
Query: 289 GMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV------------------AACNKIQSQ 330
+ + SKAF+ G R+G + A +
Sbjct: 247 NYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYA 306
Query: 331 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL-----EGVKMSE 385
+SGA+ +Q A L G V + + + K F + +E
Sbjct: 307 LSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNE 366
Query: 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT--CIRIS 443
P + F Y G +S L + A+ +
Sbjct: 367 PLADGFYF--TVGYKG---------MDSSKLIEKFVRYGMCAITLKTTGSKRNEAMRICT 415
Query: 444 YAASLTTLQAAVERIKK 460
+ +R++
Sbjct: 416 SLLPESQFPDLEKRLQM 432
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Length = 398 | Back alignment and structure |
|---|
Score = 479 bits (1235), Expect = e-168
Identities = 90/414 (21%), Positives = 170/414 (41%), Gaps = 47/414 (11%)
Query: 68 LSPRVNAV--KPSKTVAITDQATALAQ--AGVSVIRLAAGEPDFDTPVLIAEAGINAIRE 123
++ + + S + + A +V + G P P ++ + + +
Sbjct: 4 VNESMYQLGSVRSAIRELFEYGKKRAAIVGKENVYDFSIGNPSIPAPQIVNDTIKELVTD 63
Query: 124 ----GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPG 179
YT G +E R+AI L +G + D + ++ GA S+ A+ S
Sbjct: 64 YDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTSDA 123
Query: 180 -DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 238
DE I AP++ Y A A V +P E+F +D LE ++ +R +I+ SP+
Sbjct: 124 YDEFITIAPYFPEYKVFVNAAGARLVEVPADT-EHFQIDFDALEERINAHTRGVIINSPN 182
Query: 239 NPTGSVYPKNLLDEIARIVAKHPR-----LLVLSDEIYEHIIYAPATHTSFASLPGMWER 293
NP+G+VY + + +++ ++ K + + +++DE Y I+Y + ++
Sbjct: 183 NPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVY---DGIKVPFVTKYYDN 239
Query: 294 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAA 346
TL +SK+ ++ G R+GY+ P ++ A S+ QK V
Sbjct: 240 TLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKC 299
Query: 347 LGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEG 406
G + + A++E RD L + + G +P GAFY+F+
Sbjct: 300 QG--------ATGDINAYKENRDLLYEGLTRI-GYHCFKPDGAFYMFVKAL--------- 341
Query: 407 FGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 460
++S + C + V +V D FG +RISY ++ ++ +K
Sbjct: 342 ---EDDSNAFCEKAK-EEDVLIVAADGFGCPGWVRISYCVDREMIKHSMPAFEK 391
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375 | Back alignment and structure |
|---|
Score = 472 bits (1216), Expect = e-166
Identities = 77/374 (20%), Positives = 142/374 (37%), Gaps = 26/374 (6%)
Query: 93 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLS 152
AGVS+ L E F E ++ Y G+ + ++
Sbjct: 25 AGVSISSLTLEE-LFALSGTNPEDFYKKLQGTKLNYGWIEGSPAFKKSVSQLYT-----G 78
Query: 153 YTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE 212
P+QIL +NGA + L + ++ PGD VI P + ++ + A +
Sbjct: 79 VKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEEN 138
Query: 213 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 272
+L D + L + ++++ + + +NPTG+V + L+E+ I ++ +LSDE+Y
Sbjct: 139 GWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEV-GAYILSDEVYR 197
Query: 273 HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 332
+ S+ ++++ + VN SK +++ G R+G++A +
Sbjct: 198 SF-----SELDVPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYTM 252
Query: 333 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYL 392
A AL E++ + E L + E V P
Sbjct: 253 ICAGVFDDLVAQLALA---HYQEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTS 309
Query: 393 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQ 452
F+ + E C LL + V LVPG+ F D +R+ +A TL
Sbjct: 310 FVKIAV-----------DMPMEDFCLQLLQEHGVLLVPGNRFERDGYVRLGFACEQETLI 358
Query: 453 AAVERIKKGLLTLR 466
+E++ + L
Sbjct: 359 KGLEKLSQFLRRFD 372
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* Length = 427 | Back alignment and structure |
|---|
Score = 459 bits (1183), Expect = e-160
Identities = 92/401 (22%), Positives = 165/401 (41%), Gaps = 22/401 (5%)
Query: 71 RVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP----DFDTPVLIAEAGINAIREG-F 125
+ + AI D ++I L+ G+P + T + +A +A+ G +
Sbjct: 30 DMAKKTFNPIRAIVDNMKVKPNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKY 89
Query: 126 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIP 185
Y P+ G L R I +++++G Q+I + + +PG +++P
Sbjct: 90 NGYAPSIGFLSSREEIASYYHCPE-APLEAKDVILTSGCSQAIDLCLAVLANPGQNILVP 148
Query: 186 APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245
P + Y +A + +++ +D K LE + EK+ LI+ +PSNP GSV+
Sbjct: 149 RPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVF 208
Query: 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305
K L +I + A+ + +L+DEIY ++++ + A+L L+ G +K +
Sbjct: 209 SKRHLQKILAVAARQ-CVPILADEIYGDMVFSDCKYEPLATL-STDVPILSCGGLAKRWL 266
Query: 306 MTGWRLGYIAGPKHFVAACNKIQ------SQFTSGASSISQKAGVAALGLGYAGGEVVSK 359
+ GWRLG+I N+I+ SQ G +I Q A + L GE
Sbjct: 267 VPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRILGPCTIVQGALKSILCRT--PGEFYHN 324
Query: 360 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRY 419
+ + D + + G++ P GA YL + E F + EN
Sbjct: 325 TLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIEM------EHFPEFENDVEFTER 378
Query: 420 LLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 460
L+ + V +P F IR+ + A RI++
Sbjct: 379 LVAEQSVHCLPATCFEYPNFIRVVITVPEVMMLEACSRIQE 419
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 455 bits (1173), Expect = e-159
Identities = 102/416 (24%), Positives = 175/416 (42%), Gaps = 32/416 (7%)
Query: 65 DVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG 124
DVS+S V + ++D A +I+L+ G+P D +L + A I ++E
Sbjct: 5 DVSMSNHAGLV-FNPIRTVSDNAKPSPS-PKPIIKLSVGDPTLDKNLLTSAAQIKKLKEA 62
Query: 125 -----FTRYTPNAGTLELRSAICHKL------KEENGLSYTPDQILVSNGAKQSILQAVL 173
Y P G+ E R A+ KEE + D +++ +G IL A+
Sbjct: 63 IDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAIT 122
Query: 174 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLI 233
A+C GD ++P P + Y + + R ++ D + +K++LLI
Sbjct: 123 AICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLI 182
Query: 234 LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY----APATHTSFASLPG 289
+ +PSNP GS + + +++I R+ + RL + SDEIY +++ AT TS A
Sbjct: 183 VTNPSNPCGSNFSRKHVEDIVRLAEEL-RLPLFSDEIYAGMVFKGKDPNATFTSVADFET 241
Query: 290 MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-----SQFTSGASSISQKAGV 344
+ + G +K + GWRLG++ + ++ G ++ Q A
Sbjct: 242 TV-PRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALG 300
Query: 345 AALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEA 404
AL E + ++V E +L GE G+ + P+GA YL
Sbjct: 301 EALLNT--PQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDL------ 352
Query: 405 EGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 460
E + I+ LL++ V ++PG F R++ + + AVERIK
Sbjct: 353 EKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYREAVERIKA 408
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447 | Back alignment and structure |
|---|
Score = 420 bits (1082), Expect = e-145
Identities = 94/436 (21%), Positives = 179/436 (41%), Gaps = 26/436 (5%)
Query: 48 RRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDF 107
R+ +M+ S + V S V A A G +I L G +
Sbjct: 10 RQFTNLMSTSRPKVVANKYFTSNTAKDVWSLTNEAAAKAANNSKNQGRELINLGQGFFSY 69
Query: 108 DTPVLIAEAGINAIR-EGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166
P + A+ +Y+P G L +++ + + V+ GA +
Sbjct: 70 SPPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANE 129
Query: 167 SILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR----------ISENFLL 216
IL ++ + + GDEVI+ PF+ Y + V +P E + +
Sbjct: 130 GILSCLMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTI 189
Query: 217 DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 276
D + E +T K++ +I+ +P NP G V+ + L + I KH ++++SDE+YEH+ +
Sbjct: 190 DFEQFEKAITSKTKAVIINTPHNPIGKVFTREELTTLGNICVKH-NVVIISDEVYEHLYF 248
Query: 277 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGPKHFVAACNKIQSQFTSGA 335
+ P + + TLTV K+FA TGWR+G+ ++ ++ K ++ +
Sbjct: 249 TDSFTRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRICFAS 308
Query: 336 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFID 395
S Q+A ++ KM + + + F EL G+ + P+G +++ +D
Sbjct: 309 PSPLQEACANSINDA-LKIGYFEKMRQEYINKFKIFTSIFDEL-GLPYTAPEGTYFVLVD 366
Query: 396 FSTYYGSEAEGFGKIENSES----LCRYLLDKAQVALVPGDAF-------GDDTCIRISY 444
FS E + + ++ + +L+++ V +P F + +R +
Sbjct: 367 FSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAV 426
Query: 445 AASLTTLQAAVERIKK 460
L+ AVER+K
Sbjct: 427 CKDDAYLENAVERLKL 442
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} Length = 411 | Back alignment and structure |
|---|
Score = 407 bits (1047), Expect = e-140
Identities = 124/416 (29%), Positives = 192/416 (46%), Gaps = 31/416 (7%)
Query: 70 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYT 129
V+ ++P T + +ALA + + L G PD D P + +A +AI G +Y
Sbjct: 2 ATVSRLRPYATTVFAE-MSALATR-IGAVNLGQGFPDEDGPPKMLQAAQDAIAGGVNQYP 59
Query: 130 PNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPF 188
P G+ LR AI + + G+ Y P+ ++LV+ GA ++I AVL + PG EV++ PF
Sbjct: 60 PGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPF 119
Query: 189 WVSYPEMARIADATPVILPTRI-SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+ SY + +A A V +P F LD L +T ++R LI+ SP NPTG+V
Sbjct: 120 YDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLSA 179
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307
L IA I L+V++DE+YEH+++ A H A GM ERT+T++ +K F T
Sbjct: 180 TELAAIAEIAVAA-NLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCT 238
Query: 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367
GW++G+ GP +A + + + Q A AL V+ + + R R
Sbjct: 239 GWKIGWACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDT---EDAWVAALRNSLRAR 295
Query: 368 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 427
RD L E+ G + + G ++L D G ++S C L +K VA
Sbjct: 296 RDRLAAGLTEI-GFAVHDSYGTYFLCADPR--------PLG-YDDSTEFCAALPEKVGVA 345
Query: 428 LVPGDAFGDD-------------TCIRISYAASLTTLQAAVERIKKGLLTLRPGVP 470
+P AF D +R ++ TL A+ R+ GVP
Sbjct: 346 AIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLDEAIRRLSVLAERPATGVP 401
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 Length = 386 | Back alignment and structure |
|---|
Score = 405 bits (1042), Expect = e-139
Identities = 113/402 (28%), Positives = 193/402 (48%), Gaps = 26/402 (6%)
Query: 67 SLSPRVNAVK--PSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG 124
+ +P + K T T +ALAQ I L+ G PDFD P + E + + +G
Sbjct: 2 TNNPLIPQSKLPQLGTTIFTQ-MSALAQQ-HQAINLSQGFPDFDGPRYLQERLAHHVAQG 59
Query: 125 FTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVI 183
+Y P G LR AI K + G D I V+ GA +++ A+ A+ GDEVI
Sbjct: 60 ANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVI 119
Query: 184 IPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGS 243
P + SY ++ + + +F +D + + L+E++RL+IL +P NP+ +
Sbjct: 120 CFDPSYDSYAPAIALSGGIVKRMALQ-PPHFRVDWQEFAALLSERTRLVILNTPHNPSAT 178
Query: 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 303
V+ + + + +A H + V+SDE+YEHI ++ H S + P + ER + V+ F K
Sbjct: 179 VWQQADFAALWQAIAGH-EIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKT 237
Query: 304 FAMTGWRLGYIAGPKHFVAACNKIQSQFTS-GASSISQKAGVAALGLGYAGGEVVSKMVK 362
+ MTGW++GY P A K+ Q+ + ++ +Q A L A E +
Sbjct: 238 YHMTGWKVGYCVAPAPISAEIRKVH-QYLTFSVNTPAQLALADMLR---AEPEHYLALPD 293
Query: 363 AFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLD 422
+R++RD LV + E +++ +G ++L +D+S + C++L
Sbjct: 294 FYRQKRDILVNALNES-RLEILPCEGTYFLLVDYSAV---------STLDDVEFCQWLTQ 343
Query: 423 KAQVALVPGDAFGDDTC----IRISYAASLTTLQAAVERIKK 460
+ VA +P F D IR+ +A +TL AA ER+++
Sbjct: 344 EHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQ 385
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Length = 546 | Back alignment and structure |
|---|
Score = 408 bits (1049), Expect = e-138
Identities = 76/423 (17%), Positives = 138/423 (32%), Gaps = 65/423 (15%)
Query: 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHK-LKEENGLSYTP 155
+ + D + E + Y L + I + + E G P
Sbjct: 106 SLSYVRDQLGLDPAAFLHEMVDGILGCN---YPVPPRMLNISEKIVRQYIIREMGADAIP 162
Query: 156 DQ---ILVSNGAKQSILQ-----AVLAVCSPGDEVIIPAPFWVSYPEMARIADAT--PVI 205
+ + G ++ + + GD+V I P + Y E+ +A V
Sbjct: 163 SESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVA 222
Query: 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH-PRLL 264
+ S N+ L+ ++ +PSNP + L+ + IVA+H P L+
Sbjct: 223 INADPSLNWQYPDSELDKLKDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLM 282
Query: 265 VLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC 324
+L+D++Y S ++ E TL V FSK F TGWRLG +A + V
Sbjct: 283 ILTDDVYGTFAD---DFQSLFAI--CPENTLLVYSFSKYFGATGWRLGVVAAHQQNVFDL 337
Query: 325 NKIQSQFTSGASSISQKAGVA--------------------------------------A 346
+ Q + + + + +
Sbjct: 338 ALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFS 397
Query: 347 LGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS----TYYGS 402
L + +K RR+ + + ++ E +Y ID YG
Sbjct: 398 LFALMDEADEYKHTLKQLIRRRETTLYRELGMPPLR-DENAVDYYTLIDLQDVTAKLYGE 456
Query: 403 EAEGFG-KIENSESLCRYLLDKAQVALVPGDAFGDDTC-IRISYAASLTTLQAAVERIKK 460
+ K ++ + + D+ + L+PG FG + R S A AA+ R +
Sbjct: 457 AFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGSNRPSGRASLANLNEYEYAAIGRALR 516
Query: 461 GLL 463
+
Sbjct: 517 KMA 519
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Length = 533 | Back alignment and structure |
|---|
Score = 403 bits (1036), Expect = e-136
Identities = 85/461 (18%), Positives = 155/461 (33%), Gaps = 72/461 (15%)
Query: 65 DVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG 124
++ + ++ + + + + E + ++AE A+
Sbjct: 73 IMAGYINTDGIRERLFAFLDPDKNDEDKFLIDAVNYCHTELGLNRDKVVAEWVNGAVANN 132
Query: 125 FTRYTPNAGTLELRSAICHKLKEE---NGLSYTPDQILVSNGAKQSILQAVLAVCS---- 177
+ P+ + I + L+E + + + G +I+ A ++
Sbjct: 133 Y--PVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLL 190
Query: 178 -PGDEVIIPAPFWVSYPEMARIADATPVI--LPTRISENFLLDPKVLESKLTEKSRLLIL 234
GD++ I P + Y + + D V L + ++ ++P +E + LI+
Sbjct: 191 KKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIV 250
Query: 235 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 294
+P+NPT + N L+ I + V K+P+L+++SDE+Y + S S+ + T
Sbjct: 251 VNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVP---NFKSIYSV--VPYNT 305
Query: 295 LTVNGFSKAFAMTGWRLGYIAGPKHFV-------------AACNKIQSQFTSGASSISQK 341
+ V +SK F TGWRLG IA + V +K S +
Sbjct: 306 MLVYSYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFI 365
Query: 342 AGVAA-------------------------------LGLGYAGGEVVSKMVKAFRERRDF 370
+ A G + + K ER D
Sbjct: 366 DRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQ 425
Query: 371 LVKSFGELEGVKMSEPQGAFYLFIDFS----TYYGSE-AEGFGKIENSESLCRYLLDKAQ 425
L + + ++ +Y ID YG E + L +K
Sbjct: 426 LHDAMQ-APKDE-TDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNG 483
Query: 426 VALVPGDAFG-DDTCIRISYAASLTTLQAAVERIKKGLLTL 465
V LV G FG +R+S A T I K +L L
Sbjct: 484 VVLVDGVGFGAKPGELRVSQANLPTE---DYALIGKQVLEL 521
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Length = 381 | Back alignment and structure |
|---|
Score = 389 bits (1001), Expect = e-133
Identities = 110/409 (26%), Positives = 186/409 (45%), Gaps = 39/409 (9%)
Query: 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT 126
L PR A K S I + + LAQ + + L G P P + EA A+
Sbjct: 2 RLHPRTEAAKES----IFPRMSGLAQR-LGAVNLGQGFPSNPPPPFLLEAVRRAL-GRQD 55
Query: 127 RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 186
+Y P AG LR A+ + + P+ ++V++GA +++ + ++ PGDEV++
Sbjct: 56 QYAPPAGLPALREALAEEF------AVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLE 109
Query: 187 PFWVSYPEMARIADATPVILPTRISEN-FLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245
PF+ Y A +A A ++ ++ F LD LE LT ++R L+L +P NPTG V+
Sbjct: 110 PFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVF 169
Query: 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305
+ L+ IAR+ H L ++SDE+Y+ + Y ERT TV K
Sbjct: 170 GERELEAIARLARAH-DLFLISDEVYDELYYGERPRRL---REFAPERTFTVGSAGKRLE 225
Query: 306 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 365
TG+R+G+I GPK F+ ++ + A + Q AL L + + +R
Sbjct: 226 ATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLA-RREGFYEALREGYR 284
Query: 366 ERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 425
RRD L + G+++ P+G ++L + G+ L+++A+
Sbjct: 285 RRRDLLAGGLRAM-GLRVYVPEGTYFLMAELP--------GWD--------AFRLVEEAR 327
Query: 426 VALVPGDAFGDDTC----IRISYAASLTTLQAAVERIKKGLLTLRPGVP 470
VAL+P AF + R ++ + L A+ER+ + + + R
Sbjct: 328 VALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVVNSPREAEG 376
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410 | Back alignment and structure |
|---|
Score = 384 bits (989), Expect = e-131
Identities = 118/414 (28%), Positives = 188/414 (45%), Gaps = 29/414 (7%)
Query: 69 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINA-IREGFTR 127
+ R+ + + V T A A SV+ L G PD P + E A + +
Sbjct: 2 AKRIEGLDSNVWVEFTKLA-----ADPSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQ 56
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPA 186
YT G L A+ + P+ +ILV+ GA S+ ++ + PGDEVII
Sbjct: 57 YTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMV 116
Query: 187 PFWVSYPEMARIADATPVILPTR---------ISENFLLDPKVLESKLTEKSRLLILCSP 237
PF+ Y M R+A A PV +P R S ++ DP+ LESK + K++ +IL +P
Sbjct: 117 PFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTP 176
Query: 238 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTV 297
NP G VY + L IA + KH L +SDE+YE ++Y TH A+LPGMWERT+T+
Sbjct: 177 HNPLGKVYTRQELQVIADLCVKHD-TLCISDEVYEWLVYTGHTHVKIATLPGMWERTITI 235
Query: 298 NGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEV- 356
K F++TGW+LG+ GP H + +Q ++ Q A A + +
Sbjct: 236 GSAGKTFSVTGWKLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDP 295
Query: 357 ---VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 413
+ + K +RD +V+ + G+K P G +++ D S+ ++
Sbjct: 296 ECYFNSLPKELEVKRDRMVRLLNSV-GLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYD 354
Query: 414 ESLCRYLLDKAQVALVPGDAFGDD-------TCIRISYAASLTTLQAAVERIKK 460
+++ ++ +P AF D +R + +TL AA E +
Sbjct: 355 YKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAAEEIFRA 408
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435 | Back alignment and structure |
|---|
Score = 378 bits (973), Expect = e-128
Identities = 73/396 (18%), Positives = 146/396 (36%), Gaps = 40/396 (10%)
Query: 97 VIRLAAGEP----DFDTP-------VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKL 145
+I++ E D + +I + G + A+ +
Sbjct: 40 IIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFM 99
Query: 146 KE--ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA-DAT 202
E N +++ P+ ++++ GA + + + PG+ V+IP P++ + +
Sbjct: 100 AEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVE 159
Query: 203 PVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARI 256
V + S F + LE E + + +++ +PSNP G+ +N L +
Sbjct: 160 IVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSF 219
Query: 257 VAKHPRLLVLSDEIYEHIIYAPATHTSFASL---------PGMWERTLTVNGFSKAFAMT 307
V + ++SDEIY ++ + S + +W+R V SK +
Sbjct: 220 VEDK-GIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLP 278
Query: 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367
G+R+G I V A S F SS +Q A L +++ K ++R
Sbjct: 279 GFRVGAIYSNDDMVVAAATKMSSFGL-VSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQR 337
Query: 368 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 427
+ LV + G+ + ++D S E L + ++ + +
Sbjct: 338 QKKLVSGLQKS-GISCLNGNAGLFCWVDMRHLLRSN-----TFEAEMELWKKIVYEVHLN 391
Query: 428 LVPGDAFGDDT--CIRISYAASL-TTLQAAVERIKK 460
+ PG + R+ +A TL A++R+K
Sbjct: 392 ISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKA 427
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Length = 412 | Back alignment and structure |
|---|
Score = 377 bits (970), Expect = e-128
Identities = 101/396 (25%), Positives = 178/396 (44%), Gaps = 17/396 (4%)
Query: 69 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT-R 127
R++ + P + A + G +I L+ G PD TP I E + T
Sbjct: 11 FARIDRLPPYVFNITAELKMAARRRGEDIIDLSMGNPDGPTPPHIVEKLCTVAQREDTHG 70
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPA 186
Y+ + G LR AI H ++ + P+ + +V+ G+K+ + +LA GD +++P
Sbjct: 71 YSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPN 130
Query: 187 PFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 246
P + + A IA A +P +F + + + K R++IL PSNPT
Sbjct: 131 PSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILGFPSNPTAQCVE 190
Query: 247 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306
+ + + + ++ ++V+ D Y I+Y S +PG + + SK++ M
Sbjct: 191 LDFFERVVALAKQY-DVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNM 249
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
GWR+G++ G V+A +I+S G + Q A +AAL + V + + +++
Sbjct: 250 AGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQ---QCVRDIARQYQQ 306
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
RRD LVK E G + P+ + Y++ E + + S + LL A+V
Sbjct: 307 RRDVLVKGLREA-GWMVENPKASMYVWAKIP-------EPYAHL-GSLEFAKKLLQDAKV 357
Query: 427 ALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKK 460
++ PG FGD D +R + + L+ AV IK
Sbjct: 358 SVSPGIGFGDYGDDHVRFALIENRDRLRQAVRGIKA 393
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* Length = 422 | Back alignment and structure |
|---|
Score = 376 bits (967), Expect = e-127
Identities = 111/420 (26%), Positives = 186/420 (44%), Gaps = 35/420 (8%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
+ R++ + + + LA V+ L G PDF P EA +A+ F
Sbjct: 6 QARRLDGIDYN----PWVEFVKLASE-HDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFML 60
Query: 128 --YTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVII 184
YT G L + E G P +LV+ G ++ A A+ GDEVII
Sbjct: 61 NQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVII 120
Query: 185 PAPFWVSYPEMARIADATPVILPTR----------ISENFLLDPKVLESKLTEKSRLLIL 234
PF+ Y M +A PV + + S N+ LDP L K T +++ L+L
Sbjct: 121 IEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVL 180
Query: 235 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 294
+P+NP G V+ + L+ +A + +H ++ ++DE+Y+ ++Y H S ASLPGMWERT
Sbjct: 181 NTPNNPLGKVFSREELELVASLCQQH-DVVCITDEVYQWMVYDGHQHISIASLPGMWERT 239
Query: 295 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS-GASSISQKAGVAALGLGYA- 352
LT+ K F+ TGW++G++ GP H + + Q + + SQ A +
Sbjct: 240 LTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVH-QNSVFHCPTQSQAAVAESFEREQLL 298
Query: 353 ---GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK 409
+ +A + RD +++S + G+K PQG+++L D S + + G
Sbjct: 299 FRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKPIIPQGSYFLITDISDFKRKMPDLPGA 357
Query: 410 I--ENSESLCRYLLDKAQVALVPGDAFGDD-------TCIRISYAASLTTLQAAVERIKK 460
+ ++++ + +P F IR + TLQA E+++K
Sbjct: 358 VDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRK 417
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429 | Back alignment and structure |
|---|
Score = 374 bits (963), Expect = e-127
Identities = 100/431 (23%), Positives = 180/431 (41%), Gaps = 31/431 (7%)
Query: 54 MACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLI 113
M+ + E + L R S + + LA + L G PD+ P
Sbjct: 1 MSSTSNETMHNKFDLPKRYQGSTKS----VWVEYIQLAAQ-YKPLNLGQGFPDYHAPKYA 55
Query: 114 AEAGINAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSIL 169
A A +YT G L A+ + + P ++LV+ GA +++
Sbjct: 56 LNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALY 115
Query: 170 QAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILP--------TRISENFLLDPKVL 221
+ GDEVII PF+ Y M + A P +P T S +++LD L
Sbjct: 116 ATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNEL 175
Query: 222 ESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 281
E+ EK++++I+ +P NP G V + L+ +A + K +L +SDE+YEH+++ P H
Sbjct: 176 EALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKW-NVLCVSDEVYEHMVFEPFEH 234
Query: 282 TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQK 341
+LPGMWERT+T+ K F++TGW++G+ GP+ + + ++ Q+
Sbjct: 235 IRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQE 294
Query: 342 AGVAALGLGY----AGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS 397
A + + + +RD++ E+ G+ + PQG +++ D+S
Sbjct: 295 AIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-GMNPTVPQGGYFMVADWS 353
Query: 398 TY-YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD-------TCIRISYAASLT 449
+ + +++ + +P AF + +R +
Sbjct: 354 SLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDE 413
Query: 450 TLQAAVERIKK 460
LQ A E ++K
Sbjct: 414 NLQKAAEILRK 424
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428 | Back alignment and structure |
|---|
Score = 373 bits (961), Expect = e-126
Identities = 72/400 (18%), Positives = 147/400 (36%), Gaps = 39/400 (9%)
Query: 97 VIRLAAGEP----DFDTPVLIAEAGINAIREG------FTRYTPNAGTLELRSAICHKLK 146
VI++ E D + + EG + G E R AI ++
Sbjct: 38 VIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFME 97
Query: 147 EENG--LSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD-ATP 203
+ G + + P++++++ GA + + + PGD ++P+P++ ++ R
Sbjct: 98 KTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQL 157
Query: 204 VILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIV 257
+ + S NF + K ++ K + LIL +PSNP G+ K+ L +
Sbjct: 158 IPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFT 217
Query: 258 AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-------WERTLTVNGFSKAFAMTGWR 310
+H + ++ DEIY ++ S A + + V SK + G+R
Sbjct: 218 NQH-NIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFR 276
Query: 311 LGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRD 369
+G I V K+ S + A A L + + +R
Sbjct: 277 VGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLA--AMLSDEKFVDNFLRESAMRLGKRHK 334
Query: 370 FLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV 429
+ G+K + + ++D ++ SL R +++ ++ +
Sbjct: 335 HFTNGLEVV-GIKCLKNNAGLFCWMDLRPLLRES-----TFDSEMSLWRVIINDVKLNVS 388
Query: 430 PGDAFGDDT--CIRISYAASL-TTLQAAVERIKKGLLTLR 466
PG +F R+ +A T+ A+ RI++ + +
Sbjct: 389 PGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGVEK 428
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} Length = 404 | Back alignment and structure |
|---|
Score = 367 bits (944), Expect = e-124
Identities = 86/397 (21%), Positives = 165/397 (41%), Gaps = 24/397 (6%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT- 126
+S ++ + S + + + +I +A G PD TP I + A+
Sbjct: 22 ISNKLANIPDSYFGKTMGRK--IEHGPLPLINMAVGIPDGPTPQGIIDHFQKALTIPENQ 79
Query: 127 RYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIP 185
+Y G + AI + + ++ + ++ + G K ++ V +PGD V++P
Sbjct: 80 KYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLP 139
Query: 186 APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245
P + Y +AD PV L ++L D ++S++ +K++L+ L P+NPTGS
Sbjct: 140 DPGYTDYLAGVLLADGKPVPLNLE-PPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTA 198
Query: 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305
K + DE ++ D Y + A + S + + + + SK +
Sbjct: 199 TKEVFDEAIAKFKGT-DTKIVHDFAYGAFGFD-AKNPSILASENGKDVAIEIYSLSKGYN 256
Query: 306 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 365
M+G+R+G+ G K + A K Q+ +G Q A + AL + + + F+
Sbjct: 257 MSGFRVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNH---YDDFLEEQSNVFK 313
Query: 366 ERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 425
RRD + + +G Y++++ Y SE ++L+ +
Sbjct: 314 TRRDRFEAMLAKA-DLPFVHAKGGIYVWLETPPGYD-----------SEQFEQFLVQEKS 361
Query: 426 VALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKK 460
+ + PG FG+ + +RIS A L A R+ +
Sbjct: 362 ILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRLTE 398
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} Length = 376 | Back alignment and structure |
|---|
Score = 347 bits (893), Expect = e-117
Identities = 91/378 (24%), Positives = 161/378 (42%), Gaps = 25/378 (6%)
Query: 89 ALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT-RYTPNAGTLELRSAICHKLKE 147
+ GV +I L+ G D P +A A+ + T Y + TL +
Sbjct: 19 KARERGVGLIDLSIGSTDLPPPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEG 78
Query: 148 ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 206
G+ P + L G+++ + +LA+ P D +++P + SY AR+A ++
Sbjct: 79 RYGVGLDPRREALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLI 138
Query: 207 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 266
P R E+ L D K + + ++++L+L P+NPTG+V +E + KH L ++
Sbjct: 139 PLR--EDGLADLKAVPEGVWREAKVLLLNYPNNPTGAVADWGYFEEALGLARKH-GLWLI 195
Query: 267 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 326
D Y +Y S +LPG ER + + SK++ + G+RLG+ G + +A +
Sbjct: 196 HDNPYVDQVYE-GEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGSEEALARLER 254
Query: 327 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386
++ + + GV AL EVV + +RER + ++ + + P
Sbjct: 255 VKGVIDFNQYAGVLRMGVEALKTPK---EVVRGYARVYRERALGMAEALK--GVLSLLPP 309
Query: 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISY 444
+ YL+ L+++ VAL PG FG +RI+
Sbjct: 310 RATMYLWGRLPEGVD-----------DLEFGLRLVERG-VALAPGRGFGPGGKGFVRIAL 357
Query: 445 AASLTTLQAAVERIKKGL 462
L L A +RI++ L
Sbjct: 358 VRPLEELLEAAKRIREAL 375
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430 | Back alignment and structure |
|---|
Score = 332 bits (852), Expect = e-110
Identities = 67/428 (15%), Positives = 149/428 (34%), Gaps = 51/428 (11%)
Query: 68 LSPRVNAVK-PSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLI---AEAGINAI-R 122
LS + P ++ + A+A + G + +A N +
Sbjct: 25 LSDLGQNMFYPKGILSQS------AEAKSTTYNATIGMATNKDGKMFASSLDAMFNDLTP 78
Query: 123 EGFTRYTPNAGTLELRSAICHKLKEEN-GLSYTP-DQILVSNGAKQSILQAVLAVCSPGD 180
+ Y P G ELR K+ +N LS + +V+N + + D
Sbjct: 79 DEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVNQDD 138
Query: 181 EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK---SRLLILCSP 237
+++P W +Y + + + ++ L L ++IL P
Sbjct: 139 TILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYP 198
Query: 238 SNPTGSVYPKNLLDEIARIV----AKHPRLLVLSDEIYEHIIY----APATHTSFASLPG 289
+NPTG + I + K +++ + D+ Y + Y + T+ +L
Sbjct: 199 NNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHS 258
Query: 290 MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF-------TSGASSISQKA 342
+ ++G +K F G+R+G++ ++++ S +Q A
Sbjct: 259 NAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSA 318
Query: 343 GVAALGLGYAGGEVVSKMVKAFRERRDF---LVKSFGELEGVKMSEPQGAFYLFIDFSTY 399
L + + + ++ +ER + +V + + + +++ I
Sbjct: 319 VKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNSGYFMAIKVHD- 377
Query: 400 YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERI 458
+ E+L ++L+DK + ++ +A IRI+++ + + I
Sbjct: 378 -----------VDPEALRKHLIDKYSIGVIALNATD----IRIAFSCVEKDDIPHVFDSI 422
Query: 459 KKGLLTLR 466
K + LR
Sbjct: 423 AKAIDDLR 430
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* Length = 400 | Back alignment and structure |
|---|
Score = 327 bits (840), Expect = e-109
Identities = 97/389 (24%), Positives = 153/389 (39%), Gaps = 42/389 (10%)
Query: 90 LAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-----GFTRYTPNAGTLELRSAICHK 144
L +VI L+ G+ +AEA ++I Y P+ G LR +
Sbjct: 28 LENPQHTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSED 87
Query: 145 LKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV 204
+I +S+GAK + +L+ P V I P + +Y ++AR+ A +
Sbjct: 88 FYRGF---VDAKEIFISDGAKVDLF-RLLSFFGPNQTVAIQDPSYPAYLDIARLTGAKEI 143
Query: 205 I-LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL 263
I LP F + +L LCSP+NPTG+V K+ L I +H +
Sbjct: 144 IALPCLQENAFFPEFPE-----DTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEH-EI 197
Query: 264 LVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 323
L+L D Y I P+ S +P + +N FSK G RLG+ P+ A
Sbjct: 198 LILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELTYA 257
Query: 324 C--------NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF 375
+ S +GAS +Q+AGVA L + + +RE D L K+
Sbjct: 258 DGHFVIQDWERFLSTTFNGASIPAQEAGVAGL-----SILPQLEAIHYYRENSDLLRKAL 312
Query: 376 GELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 435
G ++ + A YL++ + S L + L + +A+ PG FG
Sbjct: 313 LAT-GFEVFGGEHAPYLWVKPTQANIS----------DRDLFDFFLREYHIAITPGIGFG 361
Query: 436 D--DTCIRISYAASLTTLQAAVERIKKGL 462
+R S + AA ER++
Sbjct: 362 RSGSGFVRFSSLGKREDILAACERLQMAP 390
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Length = 432 | Back alignment and structure |
|---|
Score = 320 bits (823), Expect = e-106
Identities = 95/450 (21%), Positives = 164/450 (36%), Gaps = 59/450 (13%)
Query: 43 LNKSDRRVLRVMACSGVEEVQVDVSLSPRVNAVKPS---KTVAITDQATALAQAGVSVIR 99
+ K V E + VS + ++ ++ +A A L VI
Sbjct: 1 MAKRVNTCKCVATPQEKIEYKTKVSRNSNMSKLQAGYLFPEIARRRSAHLLKYPDAQVIS 60
Query: 100 LAAGEPDFDTPVLIAEAGINAIRE-----GFTRYTPNAGTLELRSAICHKLKEENGLSYT 154
L G+ P +I A E G++ Y G LR+AI G+
Sbjct: 61 LGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGD- 119
Query: 155 PDQILVSNGAKQSI--LQAVLAVCSPGDEVIIPAPFWVSYPEMARIA------------D 200
D + VS+GAK I LQ + + + P + +Y + + I
Sbjct: 120 -DDVFVSDGAKCDISRLQVMF---GSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKY 175
Query: 201 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 260
+ F D ++ ++ CSP+NPTG+ + L ++ K+
Sbjct: 176 GNIEYMRCTPENGFFPDLST-----VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKN 230
Query: 261 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 320
+++ D Y + S +PG E + FS TG RLG+ PK
Sbjct: 231 -GSIIVYDSAYAMYMSDD-NPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKL 288
Query: 321 VAAC--------NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 372
+ + N+I +GAS+ISQ +A L G E + K++ ++E + ++
Sbjct: 289 LYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTP--EGLEAMHKVIGFYKENTNIII 346
Query: 373 KSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD 432
+F L G + + A Y+++ F S + +L+K V PG
Sbjct: 347 DTFTSL-GYDVYGGKNAPYVWVHFPNQS------------SWDVFAEILEKTHVVTTPGS 393
Query: 433 AFGD--DTCIRISYAASLTTLQAAVERIKK 460
FG + +R+S + A R K+
Sbjct: 394 GFGPGGEGFVRVSAFGHRENILEACRRFKQ 423
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500 | Back alignment and structure |
|---|
Score = 320 bits (822), Expect = e-105
Identities = 80/413 (19%), Positives = 144/413 (34%), Gaps = 34/413 (8%)
Query: 79 KTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT--RYTPNAGTLE 136
+ V + AL +++ + F + I A+ G Y+ + G
Sbjct: 80 QPVTFFREVLALCDHP-DLLQREEIKTLFSADSISRAKQILAMIPGRATGAYSHSQGIHG 138
Query: 137 LRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS-PGDEVIIPAPFWVSYPEM 195
LR AI + +G D I +++GA + + + D +++P P + Y
Sbjct: 139 LRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSAS 198
Query: 196 ARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNL 249
+ V S + L+ ++ +L + R L++ +P NPTG V +
Sbjct: 199 IALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEEN 258
Query: 250 LDEIARIVAKHPRLLVLSDEIYEHIIYAP-ATHTSFASL---PGMWERTL---TVNGFSK 302
+I + L++L+DE+Y+ IY SF + G E L + SK
Sbjct: 259 QYDIVKFCKNE-GLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSK 317
Query: 303 A-FAMTGWRLGYIAGPKHFVAACNKIQSQFTSG--ASSISQKAGVAALGLGYAGGE---- 355
+ G R GY +I + ++ Q + A E
Sbjct: 318 GYYGECGKRGGYFEITGFSAPVREQIYKIASVNLCSNITGQILASLVMNPPKASDESYAS 377
Query: 356 ---VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF--IDFSTYYGSEAEGFGKI 410
++ + R L +F +LEG+ +E +GA Y+F I A+
Sbjct: 378 YKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAAN-K 436
Query: 411 ENSESLCRYLLDKAQVALVPGDAFGDDTC---IRISYAASLTTLQAAVERIKK 460
LL+ + +VPG FG R + + A + R
Sbjct: 437 APDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTV 489
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* Length = 427 | Back alignment and structure |
|---|
Score = 313 bits (802), Expect = e-103
Identities = 57/397 (14%), Positives = 118/397 (29%), Gaps = 53/397 (13%)
Query: 96 SVIRLAAGEPDFDTPVLIAEAGINAIRE---GFTRYTPNAGTL----ELRSAICHKLKEE 148
+A+G+ F +A+ Y N + EL I +
Sbjct: 57 CSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVV 116
Query: 149 NGLSYTPDQILVSNGAKQSILQAVLAVCS--------PGDEVIIPAPFWVSYPEMARIAD 200
+ I+ G Q I V+++ P +V+ APF+ + E + D
Sbjct: 117 GNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFD 176
Query: 201 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 260
+ + + + + ++ SP+NP G + H
Sbjct: 177 KKGY--------VWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLR--------------H 214
Query: 261 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGPKH 319
++ IY+ + Y P + + + + + SK +G R G+ + +
Sbjct: 215 A-VIKGCKSIYDMVYYWP----HYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDES 269
Query: 320 FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG--------EVVSKMVKAFRERRDFL 371
++ T G +Q + L A ++ + K RER +
Sbjct: 270 VYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNI 329
Query: 372 VKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE-NSESLCRYLLDKAQVALVP 430
+ + E + Y S + + K E + C ++
Sbjct: 330 TALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQN 389
Query: 431 GDAFG-DDTCIRISYAASLTTLQAAVERIKKGLLTLR 466
G F +R+S + + +K + R
Sbjct: 390 GVGFEASSRYVRLSLIKTQDDFDQLMYYLKDMVKAKR 426
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Length = 498 | Back alignment and structure |
|---|
Score = 309 bits (792), Expect = e-100
Identities = 75/396 (18%), Positives = 142/396 (35%), Gaps = 41/396 (10%)
Query: 102 AGEPDFDTPVLIAEAGI--NAIREGFTRYTPNAGTLELRSAICHKLKE-ENGLSYTPDQI 158
P F I Y+ + G +R + + + G+ PD I
Sbjct: 97 LDSPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNI 156
Query: 159 LVSNGAKQSILQAVLAVCSPGDE----VIIPAPFWVSYPEMARIADATPVILPTRISENF 214
++ GA I + + S G + V+IP P + Y + DA V +
Sbjct: 157 YLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCW 216
Query: 215 LLDPKVLESKLTEKS-----RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 269
L+ L + E ++L + +P NPTG V + ++++ + +L +L+DE
Sbjct: 217 ALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEE-KLFLLADE 275
Query: 270 IYEHIIYAP-ATHTSFASL-----PGMWERTLTV--NGFSKAF-AMTGWRLGYIA---GP 317
+Y+ +Y+P SF + P + SK + G+R GY+
Sbjct: 276 VYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLH 335
Query: 318 KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE--------VVSKMVKAFRERRD 369
K+ S +S +A + + GE ++ ++
Sbjct: 336 PEIKGQLVKLLSVRLC--PPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAK 393
Query: 370 FLVKSFGELEGVKMSEPQGAFYLF--IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 427
F ++ G+ + QGA Y F I A+ + C LL++ +
Sbjct: 394 LTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQ-MAPDMFYCMKLLEETGIC 452
Query: 428 LVPGDAFG---DDTCIRISYAASLTTLQAAVERIKK 460
+VPG FG R++ + L+ ++++K
Sbjct: 453 VVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVKD 488
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449 | Back alignment and structure |
|---|
Score = 297 bits (763), Expect = 1e-96
Identities = 95/443 (21%), Positives = 167/443 (37%), Gaps = 52/443 (11%)
Query: 48 RRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQATALAQA---GVSVIRLAAGE 104
RR+ V+ +DV + ++ + Q +I L G+
Sbjct: 19 RRMTAVVQAVAQRAGTIDVQRNENFGKLRAGYLFPEIARRRKAHQEKNPDAKIISLGIGD 78
Query: 105 PDFDTPVLIAEAGINAI-----REGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQIL 159
P IA+A A REG++ Y G LR A+ G + D+I
Sbjct: 79 TTEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRA--ADEIF 136
Query: 160 VSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATP----------VILPTR 209
+S+G+K I + + V + P + Y + + + T +
Sbjct: 137 ISDGSKCDIA-RIQMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCN 195
Query: 210 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 269
+F D +++ ++ CSP+NPTG+ + L E+ K+ +++ D
Sbjct: 196 PDNHFFPDLSK-----AKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKN-GSILVYDA 249
Query: 270 IYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC----- 324
Y I P + +PG E + FSK TG RLG+ PK A
Sbjct: 250 AYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVH 309
Query: 325 ---NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 381
N++ + +GAS+I Q G+A L G + ++ M+K ++E L +F E+ G
Sbjct: 310 ADWNRVMTTCFNGASNIVQAGGLACLQP--EGLKEMNAMIKFYKENAQILKTTFTEM-GF 366
Query: 382 KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTC 439
+ A Y+++ F S + +L++ + PG +G +
Sbjct: 367 SVYGGDDAPYIWVGFPGKP------------SWDVFAEILERCNIVTTPGSGYGPAGEGF 414
Query: 440 IRISYAASLTTLQAAVERIKKGL 462
+R S S + AV R K+
Sbjct: 415 VRASAFGSRENILEAVRRFKEAY 437
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444 | Back alignment and structure |
|---|
Score = 282 bits (724), Expect = 7e-91
Identities = 61/441 (13%), Positives = 131/441 (29%), Gaps = 70/441 (15%)
Query: 76 KPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVL--------------IAEAGINAI 121
+P+ + D ++ V L G P V ++
Sbjct: 13 QPTGISQLMDDLGDALKSDQPVNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSA 72
Query: 122 REGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC----- 176
Y+ G A+ + T + I ++NG++ +
Sbjct: 73 IISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVN 132
Query: 177 ----------SPGDEVIIPAPFWVSYPEMARIADA----TPVILPTRISEN-----FLLD 217
++ P ++ Y ++ P I + +D
Sbjct: 133 EHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVD 192
Query: 218 PKVLESKL---TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 274
+ LE+ + + P+NPTG+V + +A I ++ + ++ D Y
Sbjct: 193 FEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRY-DIPLIIDNAYGMP 251
Query: 275 IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 334
+ T+ SK + G R G I + A + + +
Sbjct: 252 FPNIIYS---DAHLNWDNNTILCFSLSK-IGLPGMRTGIIVADAKVIEAVSAMNAVVNLA 307
Query: 335 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL---EGVKMSEPQGAFY 391
+ + +++ ++++ VK + + + +P+GA +
Sbjct: 308 PTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIF 367
Query: 392 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT----------CIR 441
L++ F ++ L L K +VP + F CIR
Sbjct: 368 LWLWFK----------DLPISTLDLYERLKAK-GTLIVPSEYFFPGVDVSDYQHAHECIR 416
Query: 442 ISYAASLTTLQAAVERIKKGL 462
+S AA TL ++ I + +
Sbjct: 417 MSIAADEQTLIDGIKVIGEVV 437
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417 | Back alignment and structure |
|---|
Score = 273 bits (700), Expect = 1e-87
Identities = 61/394 (15%), Positives = 124/394 (31%), Gaps = 44/394 (11%)
Query: 97 VIRLAAGEPDFDTPVL--IAEAGINAIREG-----FTRYTPNAGTLELRSAICHKLKEEN 149
I L G P + + + G Y G L +A+ L+E
Sbjct: 33 AIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETL 92
Query: 150 GLSYTPDQILVSNGAKQSI---LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 206
G P I ++NG++ + + G + P Y A + +
Sbjct: 93 GWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFV 152
Query: 207 PTRI------SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 260
R F + E++ ++ + P+NPTG+V L ++ R+ +H
Sbjct: 153 SARPNIELLPEGQFKYHVDFEHLHIGEETGMICVSRPTNPTGNVITDEELMKLDRLANQH 212
Query: 261 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 320
+ ++ D Y F+ +W + + + G R G I
Sbjct: 213 -NIPLVIDNAYGVPFP----GIIFSEARPLWNPNIILCMSLSKLGLPGSRCGIIIANDKT 267
Query: 321 VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL-- 378
+ A + + + + + + + +R +
Sbjct: 268 ITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLS 327
Query: 379 -EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD 437
E + +P+GA +L++ F +E L + L V +VPG F
Sbjct: 328 EERCLIHKPEGAIFLWLWFK----------DLPITTELLYQRLK-ARGVLMVPGHYFFPG 376
Query: 438 T---------CIRISYAASLTTLQAAVERIKKGL 462
C+R++Y ++A V+ + + +
Sbjct: 377 LDKPWPHTHQCMRMNYVPEPDKIEAGVKILAEEI 410
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376 | Back alignment and structure |
|---|
Score = 255 bits (654), Expect = 2e-81
Identities = 73/390 (18%), Positives = 136/390 (34%), Gaps = 40/390 (10%)
Query: 82 AITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAI 141
+ L GEP F+TP I +A N Y +A LR+A
Sbjct: 10 ERLRALLKEITPKKRGLDLGIGEPQFETPKFIQDALKNHT-HSLNIYPKSAFEESLRAAQ 68
Query: 142 CHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIA 199
K + ++++ + G+++ + V + P PF+ Y A+
Sbjct: 69 RGFFKRRFKIELKENELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFI 128
Query: 200 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK 259
A +++P +F L K ++ L+IL SP+NPTG L ++ K
Sbjct: 129 KAKSLLMPLTKENDFTPS---LNEKELQEVDLVILNSPNNPTGRTLSLEELISWVKLALK 185
Query: 260 HPRLLVLSDEIYEHIIYAPATHTSF-----ASLPGMWERTLTVNGFSKAFAMTGWRLGYI 314
H ++++DE Y I Y S + ++ L ++ SK + G R G+I
Sbjct: 186 H-DFILINDECYSEI-YENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFI 243
Query: 315 AGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 374
AG + ++ +++ QKA AA + K
Sbjct: 244 AGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWL----DDRHAEFFRNIYANNLKLARKI 299
Query: 375 FGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 434
F +FY+++ ++N E+ + L + +P
Sbjct: 300 FKNTLI-----YPYSFYVYL--------------PVQNGENFAKTLYQNEGIITLPALYL 340
Query: 435 GDDTC----IRISYAASLTTLQAAVERIKK 460
G + +R++ L+ +E I+
Sbjct: 341 GRNRIGADYVRLALVYDTPLLEKPLEIIET 370
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396 | Back alignment and structure |
|---|
Score = 217 bits (555), Expect = 2e-66
Identities = 92/418 (22%), Positives = 175/418 (41%), Gaps = 49/418 (11%)
Query: 67 SLSPRVNAVKP---SKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE 123
++ + +KP ++ +A G+ + L GEP TP +I +A ++
Sbjct: 1 GMNTLLKQLKPYPFARLHEAMQGISA--PEGMEAVPLHIGEPKHPTPKVITDALTASL-H 57
Query: 124 GFTRYTPNAGTLELRSAICHKLKEE-NGLSYTPD-QILVSNGAKQSILQAVLAVCSP--- 178
+Y AG ELR A + LK +GL+ D +IL G+++++ V V +P
Sbjct: 58 ELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSD 117
Query: 179 --GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCS 236
++ P PF+ Y + + +F D + + ++ ++++L+ +CS
Sbjct: 118 GIKPAIVSPNPFYQIYEGATLLGGGEIHFANCP-APSFNPDWRSISEEVWKRTKLVFVCS 176
Query: 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF----ASLPGMWE 292
P+NP+GSV + E+ + K+ ++ SDE Y I + A L +
Sbjct: 177 PNNPSGSVLDLDGWKEVFDLQDKY-GFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQ 235
Query: 293 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA 352
+ L SK + G R G++AG + ++ S S Q+A +AA
Sbjct: 236 KLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWD---- 291
Query: 353 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 412
+ V + ++E+ + ++ ++ VK+ P +FY+++ K+ +
Sbjct: 292 DEQHVIDNRRLYQEKFERVIPILQQVFDVKL--PDASFYIWL--------------KVPD 335
Query: 413 SESL--CRYLLDKAQVALVPGDAFGDDTC--------IRISYAASLTTLQAAVERIKK 460
+ L R L KA + ++PG DT +RI+ A + T A E I
Sbjct: 336 GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAEDIVS 393
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* Length = 391 | Back alignment and structure |
|---|
Score = 208 bits (530), Expect = 6e-63
Identities = 68/411 (16%), Positives = 127/411 (30%), Gaps = 52/411 (12%)
Query: 72 VNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG---FTRY 128
V K I+++ ++ V+ L G+P + Y
Sbjct: 2 VKLENSRKPEKISNKNIPMSD---FVVNLDHGDPTAYEEYWRKMGDRCTVTIRGCDLMSY 58
Query: 129 TPNAGTL------ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDE- 181
+ L EL AI + I+V G+ Q AV A+ S
Sbjct: 59 FSDMTNLCWFLEPELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQ 118
Query: 182 ---VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 238
V+ APF+ +Y E + + D + + + ++ SP+
Sbjct: 119 PVSVVAAAPFYSTYVEETTYVRSGMY--------KWEGDAWGFD---KKGPYIELVTSPN 167
Query: 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVN 298
NP G + + + V+ D Y Y P + + + + +
Sbjct: 168 NPDG-----TIRETVVNR-PDDDEAKVIHDFAY----YWP----HYTPITRRQDHDIMLF 213
Query: 299 GFSKAFAMTGWRLGY-IAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVV 357
FSK G R+G+ + K + + G S SQ L + +
Sbjct: 214 TFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSE 273
Query: 358 SKMVKAF-------RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI 410
S+ F + R + L + E + + + AF + + A +
Sbjct: 274 SESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGK-SLESYPAFAWLGT 332
Query: 411 ENSESLCRYLLDKAQVALVPGDAFGDDT-CIRISYAASLTTLQAAVERIKK 460
+ L L + +V G+ G D +R+S + +ER+
Sbjct: 333 KEETDLVSELR-RHKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLERLAN 382
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} Length = 377 | Back alignment and structure |
|---|
Score = 185 bits (471), Expect = 3e-54
Identities = 82/365 (22%), Positives = 150/365 (41%), Gaps = 33/365 (9%)
Query: 106 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165
DF T + +A +A++ Y P+ L A + G P+ I
Sbjct: 34 DFSTCPAVLQAITDAVQREAFGYQPDGS--LLSQATAEFYADRYGYQARPEWIFPIPDVV 91
Query: 166 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT--PVILPTRISENFLLDPKVLES 223
+ + A+ +VI+P P +YP + AT I I ++ +E
Sbjct: 92 RGLYIAIDHFTPAQSKVIVPTP---AYPPFFHLLSATQREGIF---IDATGGINLHDVEK 145
Query: 224 KLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS 283
+R ++LC+P NP G V+ L+E+ + ++ VL DEI+ +++ HT
Sbjct: 146 GFQAGARSILLCNPYNPLGMVFAPEWLNELCDLAHRY-DARVLVDEIHAPLVF-DGQHTV 203
Query: 284 FASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFTSGASSISQK 341
A + +T+ SKA+ + G + I ++ GAS++
Sbjct: 204 AAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLI 263
Query: 342 AGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTY 399
A AA Y G +++ V + DFL+ + + G K++ Q + ++IDF
Sbjct: 264 AAEAA----YRYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQATYLMWIDFRDT 319
Query: 400 YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD--TCIRISYAASLTTLQAAVER 457
S + ++KA+VA+ G FG+D R+++A S L+ A++R
Sbjct: 320 -----------TIEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFATSREVLEEAIDR 368
Query: 458 IKKGL 462
+ K +
Sbjct: 369 MAKAV 373
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 Length = 390 | Back alignment and structure |
|---|
Score = 181 bits (462), Expect = 8e-53
Identities = 62/375 (16%), Positives = 143/375 (38%), Gaps = 37/375 (9%)
Query: 106 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165
DF T I EA + G Y+ E +AI H ++ + ++
Sbjct: 39 DFATAPCIIEALNQRLMHGVFGYSRWKND-EFLAAIAHWFSTQHYTAIDSQTVVYGPSVI 97
Query: 166 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT---PVILPTRISEN-FLLDPKVL 221
+ + + G+ V+I P +Y + + + + + + D L
Sbjct: 98 YMVSELIRQWSETGEGVVIHTP---AYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKL 154
Query: 222 ESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 280
E+ L + + ++++LCSP NPTG V+ + L+ +A + +H + V+SDEI+ +++
Sbjct: 155 EAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERH-GVRVISDEIHMDMVWGEQP 213
Query: 281 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQ 340
H ++++ + SK+F + Y + + + + S
Sbjct: 214 HIPWSNVAR--GDWALLTSGSKSFNIPALTGAYG------IIENSSSRDAYLSALKGRDG 265
Query: 341 KAGVAALGL-----GYAGGEV-VSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLF 393
+ + L L Y G + + ++ ++ + PQ + +
Sbjct: 266 LSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAW 325
Query: 394 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD--TCIRISYAASLTTL 451
+D + L + L+++ +VA++PG +G++ +R++ + L
Sbjct: 326 LDLRPLNIDDNA----------LQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKL 375
Query: 452 QAAVERIKKGLLTLR 466
+ V + + +R
Sbjct: 376 EKGVAGLINAIRAVR 390
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} Length = 391 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 4e-51
Identities = 68/376 (18%), Positives = 147/376 (39%), Gaps = 38/376 (10%)
Query: 106 DFDTPVLIAEAGINAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSN 162
DF I + ++ G+ E A+ + E+ D + ++
Sbjct: 38 DFKIAPEIMASMEEKLKVAAFGYESVPA-----EYYKAVADWEEIEHRARPKEDWCVFAS 92
Query: 163 GAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT---PVILPTRISEN-FLLDP 218
G +I V SPGD++++ P Y + + + + + ++
Sbjct: 93 GVVPAISAMVRQFTSPGDQILVQEP---VYNMFYSVIEGNGRRVISSDLIYENSKYSVNW 149
Query: 219 KVLESKL-TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 277
LE KL T R+++ C+P NP G + + + IA + AKH ++L++SDEI+ ++
Sbjct: 150 ADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKH-QVLLISDEIHGDLVLT 208
Query: 278 PATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGY--IAGPKHFVAACNKIQSQFTSG 334
T ++ +++ SK F + I P A
Sbjct: 209 DEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAGIGE 268
Query: 335 ASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYL 392
+ ++ A +AA Y G + ++ + R+ + + + + VK+ + ++
Sbjct: 269 PNLLAIPAAIAA----YEEGHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNASYLA 324
Query: 393 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD--TCIRISYAASLTT 450
++D S + + C+YL +K + + G+ + + +RI+ A
Sbjct: 325 WVDISALGMNAED----------FCKYLREKTGLIISAGNGYRGNGHEFVRINLACPKEL 374
Query: 451 LQAAVERIKKGLLTLR 466
+ ++R+K+G+L L
Sbjct: 375 VIDGMQRLKQGVLNLN 390
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} Length = 407 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 4e-51
Identities = 94/414 (22%), Positives = 166/414 (40%), Gaps = 39/414 (9%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT-PV-LIAEAGINAIREGF 125
L+ R N +K S + +A+ L + GV +I LAAG+PD + P ++ E + +
Sbjct: 7 LAGRANWIKGSALADVMKKASELQKKGVKLISLAAGDPDPELIPRAVLGEIAKEVLEKEP 66
Query: 126 T--RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVI 183
YTP G ELR + LK+ + L +P+ I+++ G ++ + PGD VI
Sbjct: 67 KSVMYTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVI 126
Query: 184 IPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRL-----LILCSPS 238
P +++ A +P +N + +LE K+ E LI P+
Sbjct: 127 TENPSYINTLLAFEQLGAKIEGVPV---DNDGMRVDLLEEKIKELKAKGQKVKLIYTIPT 183
Query: 239 --NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLT 296
NP G + I +K+ LL++ D Y + Y +L R +
Sbjct: 184 GQNPMGVTMSMERRKALLEIASKY-DLLIIEDTAYNFMRYEGGDIVPLKALDNE-GRVIV 241
Query: 297 VNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEV 356
SK TG+R+G+I + + A +ISQ + L GY
Sbjct: 242 AGTLSKVLG-TGFRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYH 300
Query: 357 VSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSES 415
+ + ++E+RD ++K+ L + ++P ++ EG + S
Sbjct: 301 LEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMFFL-------PEGA----DGIS 349
Query: 416 LCRYLLDKAQVALVPGDAF----GDDTCIRISYAASLTTLQAAVERIKKGLLTL 465
L+++ V +VPG F IR++++ + E I G+ L
Sbjct: 350 FANELMEREGVVVVPGKPFYTDESGKNAIRLNFSR------PSKEEIPIGIKKL 397
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* Length = 391 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 7e-51
Identities = 91/372 (24%), Positives = 160/372 (43%), Gaps = 39/372 (10%)
Query: 106 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165
DF I ++ N + + YT +I + L + + ++ S G
Sbjct: 43 DFKAAPCIIDSLKNRLEQEIYGYTTR--PDSYNESIVNWLYRRHNWKIKSEWLIYSPGVI 100
Query: 166 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT---PVILPTRISEN--FLLDPKV 220
+I + + D+++I P Y + +I P + EN +++D +
Sbjct: 101 PAISLLINELTKANDKIMIQEP---VYSPFNSVVKNNNRELIISPLQKLENGNYIMDYED 157
Query: 221 LESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 280
+E+K+ + +L ILC+P NP G V+ K+ L ++ I KH + ++SDEI+ II
Sbjct: 158 IENKIKD-VKLFILCNPHNPVGRVWTKDELKKLGDICLKH-NVKIISDEIHSDIILKKHK 215
Query: 281 HTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGP-----KHFVAACNKIQSQFTSG 334
H AS+ + T+T +K F + G + Y+ P K A +I
Sbjct: 216 HIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRID---IKR 272
Query: 335 ASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYL 392
+ S A A+ Y GE + ++ DF +K E + +K+ +P+G + L
Sbjct: 273 NNCFSLVATEAS----YNNGESWLESFLEYLESNIDFAIKYINENMPKLKVRKPEGTYLL 328
Query: 393 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD--TCIRISYAASLTT 450
++DFS S+ E L L+ K +VAL G++FG RI+ A +
Sbjct: 329 WVDFSALGLSDEE----------LESILVQKGKVALNQGNSFGIGGSGYQRINLACPRSM 378
Query: 451 LQAAVERIKKGL 462
L+ A+ RIK +
Sbjct: 379 LEEALIRIKNAI 390
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* Length = 399 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 8e-51
Identities = 84/373 (22%), Positives = 144/373 (38%), Gaps = 32/373 (8%)
Query: 106 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165
+F P + E + E YT T E + + +K+ + D I+ + G
Sbjct: 42 EFKNPPELIEGLKKYLDETVLGYT--GPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVV 99
Query: 166 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT---PVILPTRISEN-FLLDPKVL 221
++ AV PGD VII P Y + + + +D + L
Sbjct: 100 PAVFNAVREFTKPGDGVIIITP---VYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKL 156
Query: 222 ESKL-TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 280
E + ++ L+ CSP NP G V+ K+ L +I IV K L++ SDEI+ +I
Sbjct: 157 EKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKS-DLMLWSDEIHFDLIMPGYE 215
Query: 281 HTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGY--IAGPKHFVAACNKIQSQFTSGASS 337
HT F S+ + ++T+T SK F + G + I P + ++
Sbjct: 216 HTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTT 275
Query: 338 ISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFID 395
+ KA Y + +K + + + F +K +G + +ID
Sbjct: 276 LGYKACEIC----YKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWID 331
Query: 396 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD--TCIRISYAASLTTLQA 453
F + +++ KAQ+ G FGD RI+ AA + +Q
Sbjct: 332 FRALKMDHKA----------MEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQE 381
Query: 454 AVERIKKGLLTLR 466
++ER+ K L L+
Sbjct: 382 SLERLNKALKDLK 394
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* Length = 392 | Back alignment and structure |
|---|
Score = 173 bits (442), Expect = 8e-50
Identities = 88/372 (23%), Positives = 158/372 (42%), Gaps = 38/372 (10%)
Query: 106 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165
DF+ + +A + + YT + EL A+ K E+ S+ + I+ G
Sbjct: 42 DFEVMPEVKQAIHDYAEQLVYGYTYA--SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVV 99
Query: 166 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT---PVILPTRISEN-FLLDPKVL 221
+I A+ A G+ V+I +P YP AR V + F +D + L
Sbjct: 100 PAISIAIQAFTKEGEAVLINSP---VYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQL 156
Query: 222 ESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 280
E+ + E +L +LC+P NP G V+ + +L++I + KH ++++SDEI++ +
Sbjct: 157 ENDIVENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKH-HVILVSDEIHQDLTLFGHE 215
Query: 281 HTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGP-----KHFVAACNKIQSQFTSG 334
H SF ++ P + L ++ +K F + G + Y F
Sbjct: 216 HVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVN---NHHE 272
Query: 335 ASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYL 392
SS+ A A Y G+ + + E F V+ F + +K+ +PQG + +
Sbjct: 273 VSSLGYIATETA----YRYGKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQGTYLI 328
Query: 393 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD--TCIRISYAASLTT 450
++DFS Y ++ L L D+A+V L G +G + R++ AA +
Sbjct: 329 WLDFSDYGLTDDA----------LFTLLHDQAKVILNRGSDYGSEGELHARLNIAAPKSL 378
Query: 451 LQAAVERIKKGL 462
++ +RI L
Sbjct: 379 VEEICKRIVCCL 390
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} Length = 421 | Back alignment and structure |
|---|
Score = 173 bits (442), Expect = 1e-49
Identities = 87/368 (23%), Positives = 156/368 (42%), Gaps = 31/368 (8%)
Query: 106 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165
DF I EA IN RE Y +L A+ ++E+ + + IL +G
Sbjct: 72 DFLPVPEIKEAIINYGREHIFGYN--YFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVV 129
Query: 166 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT---PVILPTRISEN-FLLDPKVL 221
+I A+ A GD V+I +P Y AR V +I F +D + L
Sbjct: 130 PAISIALQAFSEKGDAVLINSP---VYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQL 186
Query: 222 ESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 280
E + + ++ +LCSP NP G V+ + L +IA + KH ++++SDEI++ + T
Sbjct: 187 EKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKH-GVILVSDEIHQDLALFGNT 245
Query: 281 HTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGY--IAGPKHFVAACNKIQSQFTSGASS 337
H S +L + T+ ++ +K F + G + + I + + +
Sbjct: 246 HHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVPT 305
Query: 338 ISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF 396
+ A AA + G+ + ++ ++K +K+ EP+G + +++DF
Sbjct: 306 VGMIATQAA----FQYGKPWLEELKTVIEGNIKLVIKELEAKTKIKVMEPEGTYLVWLDF 361
Query: 397 STYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD--TCIRISYAASLTTLQAA 454
S Y ++ + L L ++A+V L G FG + R++ A T+Q A
Sbjct: 362 SAYAIAQPQ----------LSEKLQNEAKVVLNDGAHFGKEGKYFARLNVATPKNTVQEA 411
Query: 455 VERIKKGL 462
+ RI
Sbjct: 412 LSRIISVF 419
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369 | Back alignment and structure |
|---|
Score = 156 bits (398), Expect = 8e-44
Identities = 75/353 (21%), Positives = 136/353 (38%), Gaps = 43/353 (12%)
Query: 97 VIRLAAGEPDFDTPVLIAEAGINAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSY 153
IRL E + + + + + RY P +ELR + + ++ G++
Sbjct: 32 DIRLNTNENPYPPSEALVADLVATVDKIATELNRY-PERDAVELRDELAAYITKQTGVAV 90
Query: 154 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 213
T D + +NG+ + + Q + A PG + P + +P +A+ + + +
Sbjct: 91 TRDNLWAANGSNEILQQLLQAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSRG--AD 148
Query: 214 FLLD-PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 272
F +D LE ++ ++ + +P+NPTG V LD++ RI+ P ++++ DE Y
Sbjct: 149 FRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTS---LDDVERIINVAPGIVIV-DEAYA 204
Query: 273 HIIYAPATHTSFASLPGMW--ERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ 330
+P+ T P RT SKAF G RLGY F+ A ++
Sbjct: 205 EFSPSPSATTLLEKYPTKLVVSRT-----MSKAFDFAGGRLGYFVANPAFIDAVMLVRLP 259
Query: 331 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAF 390
+ S++SQ A + AL V+ R + EL G + + F
Sbjct: 260 Y--HLSALSQAAAIVAL----RHSADTLGTVEKLSVERVRVAARLEEL-GYAVVPSESNF 312
Query: 391 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 443
FG + + + LD+ L+ G +R +
Sbjct: 313 VF--------------FGDFSDQHAAWQAFLDRG--VLI--RDVGIAGHLRTT 347
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 Length = 425 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 3e-43
Identities = 87/424 (20%), Positives = 161/424 (37%), Gaps = 59/424 (13%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT-PV-LIAEAGINAIREGF 125
+S +K S I + A I G PD +T P +AE I + +
Sbjct: 21 ISKIGQNMKSS---IIREILKFAADKDA--ISFGGGVPDPETFPRKELAEIAKEIIEKEY 75
Query: 126 TR---YTPNAGTLELRSAICHKLKEENGLSY-TPDQILVSNGAKQSILQAVLAVCSPGDE 181
Y+ G L+ I L+ G++ D ++ + G++Q++
Sbjct: 76 HYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESY 135
Query: 182 VIIPAPFWVSYP---EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSP- 237
++ P +Y R A V++P E+ +D VLE KL+E + +
Sbjct: 136 CVLDDP---AYLGAINAFRQYLANFVVVPL---EDDGMDLNVLERKLSEFDKNGKIKQVK 189
Query: 238 --------SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289
NP G + I K+ L ++ D+ Y + Y T + G
Sbjct: 190 FIYVVSNFHNPAGVTTSLEKRKALVEIAEKY-DLFIVEDDPYGALRYEGETVDPIFKI-G 247
Query: 290 MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL 349
ER + +N FSK A G R+G +AG K F+ + + + +I+ + L
Sbjct: 248 GPERVVLLNTFSKVLA-PGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLER 306
Query: 350 GYAGGEVVSKMVKAFRERRDFLVKS----FGELEGVKMSEPQGAFYLFIDFSTYYGSEAE 405
E + ++ +R +R ++ + F ++ GVK + +G ++++ E
Sbjct: 307 YDL-LEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTL-------PE 358
Query: 406 GFGKIENSESLCRYLLDKAQVALVPGDAF----GDDTCIRISYAASLTTLQAAVERIKKG 461
GF ++ + Y + +V VPG F +R+S+ E+I +G
Sbjct: 359 GF----DTWEMFEYAK-RKKVFYVPGRVFKVYDEPSPSMRLSFCL------PPDEKIVEG 407
Query: 462 LLTL 465
+ L
Sbjct: 408 IKRL 411
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} Length = 363 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 4e-43
Identities = 70/354 (19%), Positives = 128/354 (36%), Gaps = 49/354 (13%)
Query: 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD 156
+ +L++ E T +A N+ E Y P+ LR + L +
Sbjct: 34 ITKLSSNENPLGTSKKVAAIQANSSVE-TEIY-PDGWASSLRKEVADFY----QLE--EE 85
Query: 157 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 216
+++ + G + I + ++ P +V Y + A I A +P ++
Sbjct: 86 ELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLL--QDGEH 143
Query: 217 DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR--LLVLSDEIYEHI 274
D + + + + EK+ ++ +C+P+NPTG+ +I + + P L+VL DE Y
Sbjct: 144 DLEGMLNAIDEKTTIVWICNPNNPTGNYIEL---ADIQAFLDRVPSDVLVVL-DEAYIE- 198
Query: 275 IYAPATHTSFASLPGMWE-----RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS 329
Y L ++ RT FSK + + R+GY K + N ++
Sbjct: 199 -YVTPQPEKHEKLVRTYKNLIITRT-----FSKIYGLASARVGYGIADKEIIRQLNIVRP 252
Query: 330 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGA 389
F +SI QK + A+ + + + E VK+ G
Sbjct: 253 PF--NTTSIGQKLAIEAI----KDQAFIGECRTSNANGIKQYEAFAKRFEKVKLYPANGN 306
Query: 390 FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 443
F + ID + ++ YL G A G T +RI+
Sbjct: 307 F-VLIDLG-------------IEAGTIFSYLEKNG-YITRSGAALGFPTAVRIT 345
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* Length = 397 | Back alignment and structure |
|---|
Score = 154 bits (392), Expect = 1e-42
Identities = 82/416 (19%), Positives = 161/416 (38%), Gaps = 57/416 (13%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT-PV-LIAEAGINAIREGF 125
++ S I + + G+ + A G P + P AEA +RE
Sbjct: 10 FGKGAGRIQAS---TIRELLKLTQRPGI--LSFAGGLPAPELFPKEEAAEAAARILREKG 64
Query: 126 TR---YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEV 182
Y+P G LR+ + + P+++L++ G++Q++ G V
Sbjct: 65 EVALQYSPTEGYAPLRAFVAE------WIGVRPEEVLITTGSQQALDLVGKVFLDEGSPV 118
Query: 183 IIPAPFWVSYP---EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS- 238
++ AP SY + R+ + +P D LE L + + PS
Sbjct: 119 LLEAP---SYMGAIQAFRLQGPRFLTVPA---GEEGPDLDALEEVLKRERPRFLYLIPSF 172
Query: 239 -NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL--PGMWERTL 295
NPTG + P + ++V + L+V+ D+ Y + + A S L + +
Sbjct: 173 QNPTGGLTPLPARKRLLQMVMER-GLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVI 231
Query: 296 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE 355
+ FSK + G R+ + + + + ++Q L G++ E
Sbjct: 232 YLGSFSKVLS-PGLRVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFS--E 288
Query: 356 VVSKMVKAFRERRDFLVKSFGEL--EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 413
+ ++ + +RE+ ++ + + V+ + P+G +++++ +G ++
Sbjct: 289 RLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMEL-------PKGL----SA 337
Query: 414 ESLCRYLLDKAQVALVPGDAF----GDDTCIRISYAASLTTLQAAVERIKKGLLTL 465
E L R L + VA VPG F G + +R+SYA E I +G+ L
Sbjct: 338 EGLFRRAL-EENVAFVPGGPFFANGGGENTLRLSYAT------LDREGIAEGVRRL 386
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 3e-42
Identities = 69/351 (19%), Positives = 123/351 (35%), Gaps = 41/351 (11%)
Query: 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD 156
++ +A PV + A I+ + + RY P+A L A+ +
Sbjct: 26 LLDFSANINPLGMPVSVKRALIDNL-DCIERY-PDADYFHLHQALARHH----QVP--AS 77
Query: 157 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 216
IL NG +SI + +I P + Y + R ++ + L
Sbjct: 78 WILAGNGETESIFTVASGL--KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL 135
Query: 217 DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 276
+LE LT L LC+P+NPTG + + LL IA L+L DE + +
Sbjct: 136 TDAILE-ALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLIL-DEAFID--F 191
Query: 277 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGPKHFVAACNKIQSQFTSGA 335
P T F + +K +A+ G RLGY + +A + Q ++
Sbjct: 192 IPH-ETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMPWS--V 248
Query: 336 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFID 395
++++ AG AL RE ++ +L + + + + L
Sbjct: 249 NALAALAGEVALQD----SAWQQATWHWLREEGARFYQALCQLPLLTVYPGRANYLLL-- 302
Query: 396 FSTYYGSEAEGFGKIE-NSESLCRYLLDKAQVALVPGDAFG--DDTCIRIS 443
+ E L R LL + ++ + + D R++
Sbjct: 303 -------------RCEREDIDLQRRLLTQ-RILIRSCANYPGLDSRYYRVA 339
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* Length = 356 | Back alignment and structure |
|---|
Score = 151 bits (385), Expect = 5e-42
Identities = 72/351 (20%), Positives = 134/351 (38%), Gaps = 48/351 (13%)
Query: 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD 156
+ L A E + + +N RY P + G+ P+
Sbjct: 31 DVWLNANEYPTAVEFQLTQQTLN-------RY-PECQPKAVIENYAQYA----GVK--PE 76
Query: 157 QILVSNGAKQSILQAVLAVCSPG-DEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 215
Q+LVS GA + I + A C PG D ++ P + Y A +PT +N+
Sbjct: 77 QVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTL--DNWQ 134
Query: 216 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP-RLLVLSDEIYEHI 274
LD + + KL + +++ +CSP+NPTG + + ++ + +V++DE Y I
Sbjct: 135 LDLQGISDKL-DGVKVVYVCSPNNPTGQLINP---QDFRTLLELTRGKAIVVADEAY--I 188
Query: 275 IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 334
+ P S A + + SKAFA+ G R G+ + + K+ + +
Sbjct: 189 EFCPQ--ASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPYPL- 245
Query: 335 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFI 394
S+ AL G + + V R++L+ + E+ V+
Sbjct: 246 -STPVADIAAQALSP--QGIVAMRERVAQIIAEREYLIAALKEIPCVE------------ 290
Query: 395 DFSTYYGSEAEGF--GKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 443
+ SE + + + S ++ + L D+ + C+RI+
Sbjct: 291 ---QVFDSETN-YILARFKASSAVFKSLWDQGIILRDQNKQPSLSGCLRIT 337
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361 | Back alignment and structure |
|---|
Score = 148 bits (377), Expect = 8e-41
Identities = 62/361 (17%), Positives = 131/361 (36%), Gaps = 42/361 (11%)
Query: 87 ATALAQAGVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKL 145
T G ++ ++ P P I + Y P+ L +I + L
Sbjct: 18 YTEGVFKGRELLDYSSNINP-LGIPKSFLNNIDEGI-KNLGVY-PDVNYRRLNKSIENYL 74
Query: 146 KEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVI 205
L I++ NGA + I ++ ++++I P + Y A+ + V
Sbjct: 75 ----KLK--DIGIVLGNGASEIIELSISLF----EKILIIVPSYAEYEINAKKHGVSVVF 124
Query: 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 265
EN +D + + SK+ + +I+ +P+NP G + K + ++ + + ++
Sbjct: 125 SYLD--ENMCIDYEDIISKIDDV-DSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTII 181
Query: 266 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGPKHFVAAC 324
+ DE + I + +SF + + +K FAM G R GY I K A
Sbjct: 182 I-DEAF--IEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKI 238
Query: 325 NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384
Q+ + + ++ A + L + + + ++ R ++ ++ +K
Sbjct: 239 KAKQNPWN--INCFAEMAAINCL----KDTNYIEESLLWIKKERKRFIEELNKIGFIKRV 292
Query: 385 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--DDTCIRI 442
A ++ + E L LL + + + F DD+ +R
Sbjct: 293 FSPHANFVLCRLENI------------SGEKLYDSLLKE-DIVIRRCCNFIGLDDSFVRF 339
Query: 443 S 443
+
Sbjct: 340 A 340
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* Length = 448 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 9e-41
Identities = 77/419 (18%), Positives = 173/419 (41%), Gaps = 55/419 (13%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT-PV-LIAEAGINAIREGF 125
S + ++ S + + + + + I LA G P+ T P +I + + + +
Sbjct: 54 FSKKALEMRAS---EVRELLKLVETSDI--ISLAGGLPNPKTFPKEIIRDILVEIMEKYA 108
Query: 126 TR---YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEV 182
+ Y G LR + L + + I++++G++Q++ +PGD V
Sbjct: 109 DKALQYGTTKGFTPLRETLMKWLGKR-YGISQDNDIMITSGSQQALDLIGRVFLNPGDIV 167
Query: 183 IIPAPFWVSYP---EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRL-----LIL 234
++ AP +Y + + + +P ++ + ++LE KL E ++
Sbjct: 168 VVEAP---TYLAALQAFNFYEPQYIQIPL---DDEGMKVEILEEKLKELKSQGKKVKVVY 221
Query: 235 CSPS--NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292
P+ NP G ++ + + +++ +V+ D+ Y + Y+ +L
Sbjct: 222 TVPTFQNPAGVTMNEDRRKYLLELASEY-DFIVVEDDPYGELRYSGNPEKKIKALDNE-G 279
Query: 293 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA 352
R + + FSK A G+R+G++ G + + + Q + GY
Sbjct: 280 RVIYLGTFSKILA-PGFRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYL 338
Query: 353 GGEVVSKMVKAFRERRDFLVKSFGEL--EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI 410
+ + ++ K ++ RRD ++++ E EGVK ++P+G ++++ +G
Sbjct: 339 -EKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTL-------PDGI--- 387
Query: 411 ENSESLCRYLLDKAQVALVPGDAF----GDDTCIRISYAASLTTLQAAVERIKKGLLTL 465
+S+ + + K VA VPG+AF +R+++ ++I +G+ L
Sbjct: 388 -DSKKMLERAI-KKGVAYVPGEAFYAHRDVKNTMRLNFTY------VDEDKIMEGIKRL 438
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} Length = 354 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 2e-40
Identities = 67/362 (18%), Positives = 128/362 (35%), Gaps = 40/362 (11%)
Query: 86 QATALAQAGVS-VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHK 144
++ A IR+ E A +A+ + RY L L + +
Sbjct: 6 ESAAFTAPSTDNPIRINFNENPLGMSPKAQAAARDAVVKAN-RY-AKNEILMLGNKLAAH 63
Query: 145 LKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV 204
+ IL++ G+ + I A+ A S +++IP + A+IA
Sbjct: 64 H----QVE--APSILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAKIAGMKVT 117
Query: 205 ILPTRISENFLLDPKVLESKLTEK--SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP- 261
+ +N+ D + L++ + ++ L +P+NPTG++ P D I +A P
Sbjct: 118 KVKML--DNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPA---DVIEPWIASKPA 172
Query: 262 RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 321
+ + DE Y + P + + E + + FSK AM G R+GY +
Sbjct: 173 NTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVI 232
Query: 322 AACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 381
A + + + A +A++ ++ K+ R L+K+ +L +
Sbjct: 233 ALMGRYVAGE--KINFSGVDAALASM----NDSAFITYSKKSNDVSRQILLKALEDL-KL 285
Query: 382 KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIR 441
+G F +F + ++ D L+ D R
Sbjct: 286 PYLPSEGNF-VFHQLV-------------VPLKDYQTHMADAG--VLIGRAFPPADNWCR 329
Query: 442 IS 443
IS
Sbjct: 330 IS 331
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Length = 350 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 2e-39
Identities = 58/351 (16%), Positives = 126/351 (35%), Gaps = 50/351 (14%)
Query: 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD 156
++ + + + + + Y P LR + + + +
Sbjct: 17 IVNFSTTVWTDGDKDHLEKHLVENL-NCIRHY-PEPDAGTLRQMLAKRN----SVD--NN 68
Query: 157 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 216
ILV+NG + Q A G +I P + Y + R+ + P+ E+
Sbjct: 69 AILVTNGPTAAFYQIAQAF--RGSRSLIAIPSFAEYEDACRMYEHEVCFYPSN--EDIG- 123
Query: 217 DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 276
LC+P+NP G + + EI R++ HP + D+ Y +
Sbjct: 124 ------EADFSNMDFCWLCNPNNPDGRLLQR---TEILRLLNDHPDTTFVLDQSYVS--F 172
Query: 277 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGAS 336
A + G + + V FS A+ + G R+GYI K F+ + + +
Sbjct: 173 TTEEVIRPADIKG-RKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFSTPWA--VN 229
Query: 337 SISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF 396
+++ +A L + ++ ++ + + L+GV++ F+L
Sbjct: 230 ALAIEAAKFIL----IHPAQFTLPIRKWQRNTVDFITALNRLDGVEVHPSGTTFFLL--- 282
Query: 397 STYYGSEAEGFGKIENSES--LCRYLLDKAQVALVPGDAFG--DDTCIRIS 443
+++ + L +Y+L++ + + F D++ +RI+
Sbjct: 283 ------------RLKKGTAAELKKYMLEEYNMLIRDASNFRGLDESYVRIT 321
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} Length = 365 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 7e-39
Identities = 71/356 (19%), Positives = 132/356 (37%), Gaps = 50/356 (14%)
Query: 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD 156
VI+LA+ E F TP E + Y P+ +EL+S + K + +
Sbjct: 32 VIKLASNENPFGTPPKAIEC-LRQNANKAHLY-PDDSMIELKSTLAQKY----KVQ--NE 83
Query: 157 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 216
I++ G+ Q I A+ + + + + + Y A+ A + + L
Sbjct: 84 NIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSI--THNLD 141
Query: 217 DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR--LLVLSDEIYEHI 274
+ K L ++ +L+ LC P+NP G E + L+V+ D Y
Sbjct: 142 EFKKLYETHKDEIKLIFLCLPNNPLGECLDA---SEATEFIKGVNEDCLVVI-DAAYNEF 197
Query: 275 IYAPATHTSFASLPGMWE-------RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI 327
+ + E T FSK + + G R+GY + ++A K+
Sbjct: 198 ASFKDSKKHLEPCELIKEFDNVLYLGT-----FSKLYGLGGLRIGYGIANANIISAFYKL 252
Query: 328 QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387
++ F S+++ KA VAA+ E K ++ + + + + +K+ +
Sbjct: 253 RAPF--NVSNLALKAAVAAM----DDDEFTEKTLENNFSQMELYKEFAKKH-NIKIIDSY 305
Query: 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 443
F + F NS L LL K + + ++G + IRI+
Sbjct: 306 TNF-ITYFFDEK------------NSTDLSEKLLKKG-IIIRNLKSYGLN-AIRIT 346
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* Length = 425 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 9e-39
Identities = 79/437 (18%), Positives = 158/437 (36%), Gaps = 64/437 (14%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT-PV-LIAEAGINAIREGF 125
++ A PS I L++ S+I LA G P+ + P N F
Sbjct: 7 ITAASAARNPS---PIRTMTDILSRGPKSMISLAGGLPNPNMFPFKTAVITVENGKTIQF 63
Query: 126 TR--------YTPNAGTLELRSAICHKLKEENGLSY-------TPDQILVSNGAKQSILQ 170
Y+P+AG EL S + + + + V++G++Q + +
Sbjct: 64 GEEMMKRALQYSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCK 123
Query: 171 AVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSR 230
+ +PGD V++ P + + + + + + + P L L+
Sbjct: 124 VFEMIINPGDNVLLDEPAYSGTLQSLHPLGCNIINVAS---DESGIVPDSLRDILSRWKP 180
Query: 231 L-----------LILCSPS--NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 277
+ P+ NPTG+ EI + K+ L++ D+ Y + +
Sbjct: 181 EDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKY-DFLIIEDDPYYFLQFN 239
Query: 278 PATHTSFASL--PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA 335
+F S+ G R + + FSK + +G R+G++ GPK + T
Sbjct: 240 KFRVPTFLSMDVDG---RVIRADSFSKIIS-SGLRIGFLTGPKPLIERVILHIQVSTLHP 295
Query: 336 SSISQKAGVAALGLGYAGG--EVVSKMVKAFRERRDFLVKSFGEL--EGVKMSEPQGAFY 391
S+ +Q L G V +++ + ++D ++ + + + P +
Sbjct: 296 STFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMF 355
Query: 392 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF-----GDDTCIRISYA- 445
L+I I + + L K V ++PG+AF +R S++
Sbjct: 356 LWIKVK-----------GINDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS 404
Query: 446 ASLTTLQAAVERIKKGL 462
AS + A + + + +
Sbjct: 405 ASPEQMDVAFQVLAQLI 421
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} Length = 367 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 9e-39
Identities = 74/354 (20%), Positives = 140/354 (39%), Gaps = 45/354 (12%)
Query: 97 VIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTP 155
+++L A E + P + + E RY P + LR+ + + +
Sbjct: 32 LVKLDAMENPYRLPPALRSELAARLGEVALNRY-PVPSSEALRAKLKEVM----QVP-AG 85
Query: 156 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 215
++L+ NG+ + I LA PG +V+ P P +V Y A+ A V +P R +F
Sbjct: 86 MEVLLGNGSDEIISMLALAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLR--ADFT 143
Query: 216 LD-PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP----RLLVLSDEI 270
LD +L + + ++ L P+NPTG+++ ++ IV R LV+ DE
Sbjct: 144 LDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFD---AADMEAIVRAAQGSVCRSLVVVDEA 200
Query: 271 YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ 330
Y+ +A S+ S + L + SK + G RLGY+AG ++ +K++
Sbjct: 201 YQP--FAQE---SWMSRLTDFGNLLVMRTVSK-LGLAGIRLGYVAGDPQWLEQLDKVRPP 254
Query: 331 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAF 390
+ + +++ + AL V+ + R R + + GV + F
Sbjct: 255 YNV--NVLTEATALFAL----EHVAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPSAANF 308
Query: 391 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA-QVALVPGDAFGDDTCIRIS 443
L ++ ++ LL + + V C+R++
Sbjct: 309 LLA---------------RVPDAAQTFDRLLARKVLIKNVSKMHPLLANCLRVT 347
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} Length = 360 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 4e-38
Identities = 68/351 (19%), Positives = 130/351 (37%), Gaps = 48/351 (13%)
Query: 97 VIRLAAGEPDFDTPVLIAEAGINAIR---EGFTRYTPNAGTLELRSAICHKLKEENGLSY 153
I+L E + + +A + + Y P+A + +LR G
Sbjct: 28 WIKLNTNENPYPPSPEVVKAILEELGPDGAALRIY-PSASSQKLREVAGELY----GFD- 81
Query: 154 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 213
P I+++NG+ + + + A + G+E+ P + Y +A + A +
Sbjct: 82 -PSWIIMANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLT--GD 138
Query: 214 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 273
F + + ++ L +P+ P G +P L+ I + + +LVL DE Y
Sbjct: 139 FRIAGFP----ERYEGKVFFLTTPNAPLGPSFP---LEYIDELARRCAGMLVL-DETY-- 188
Query: 274 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 333
+A + + L E + SK++++ G R+G +AA +KI+ +
Sbjct: 189 AEFAES---NALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIRDHYN- 244
Query: 334 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 393
++Q A VAAL +S+ + RE R++ + G + QG + LF
Sbjct: 245 -LDRLAQAACVAAL----RDQAYLSECCRRIRETREWFTTELRSI-GYDVIPSQGNY-LF 297
Query: 394 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV-PGDAFGDDTCIRIS 443
+ + + L + LV +RIS
Sbjct: 298 ATPPD------------RDGKRVYDGLYARK--VLVRHFSDPLLAHGMRIS 334
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} Length = 337 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 3e-37
Identities = 64/362 (17%), Positives = 117/362 (32%), Gaps = 48/362 (13%)
Query: 82 AITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAI 141
++ + +A + LA E + A I A RY P + +
Sbjct: 3 SVGEAMDTEVRAAAQAVCLAFNENPEAVEPRVQAA-IAAAAARINRY-PFDAEPRVMRKL 60
Query: 142 CHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 201
D +++ G + + + P + Y ++
Sbjct: 61 AEHF----SCP--EDNLMLVRGIDECFDRISAEF--SSMRFVTAWPGFDGYRARIAVSGL 112
Query: 202 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 261
+ ++ LLDP L + ++L +PSNPTG E+ ++ +
Sbjct: 113 RHFEIGLT--DDLLLDPNDLAQ--VSRDDCVVLANPSNPTGQALS---AGELDQLRQRAG 165
Query: 262 RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 321
L++ DE Y Y+ A L FSK++ + G RLG + GP +
Sbjct: 166 -KLLI-DETYVD--YSSFRARGLAYGE----NELVFRSFSKSYGLAGLRLGALFGPSELI 217
Query: 322 AACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 381
AA + Q ++ A AAL + +R + + L G
Sbjct: 218 AAMKRKQWFCNV--GTLDLHALEAAL----DNDRAREAHIAKTLAQRRRVADALRGL-GY 270
Query: 382 KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIR 441
+++ + F L + E R+L ++ + + FG IR
Sbjct: 271 RVASSEANFVLV---------------ENAAGERTLRFLRERG-IQVKDAGQFGLHHHIR 314
Query: 442 IS 443
IS
Sbjct: 315 IS 316
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Length = 422 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 7e-34
Identities = 58/444 (13%), Positives = 131/444 (29%), Gaps = 95/444 (21%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT-PV---LIAEAGINAIRE 123
+ R+ V+ +T + L + L G+P + + L++ G + +
Sbjct: 10 DAARLAQVREE----VTAKYAELKAKN-LSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTK 64
Query: 124 GFTR---YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA------ 174
Y G ++R L D ++ +G+ +I+ +++
Sbjct: 65 DGVDCRNYGGLLGIADIRELWAE------ALGLPADLVVAQDGSSLNIMFDLISWSYTWG 118
Query: 175 --------VCSPGDEVIIPAPFWVSY-----------PEMARIADATPVILPTRISENFL 215
+ + P P Y EM + +
Sbjct: 119 NNDSSRPWSAEEKVKWLCPVP---GYDRHFTITEHFGFEMINVP-----------MTDEG 164
Query: 216 LDPKVLESKLTEKSRLLILCSP--SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 273
D V+ + + + P NPTG + + E+A + P ++ D Y
Sbjct: 165 PDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYAL 224
Query: 274 IIYAPATHTSFASLP-----GMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 328
+ + G R ++ SK G + + A K +
Sbjct: 225 HTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITH-AGSGVSFFASSKENIEWYASHA 283
Query: 329 SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF----LVKSFGELEGVKMS 384
+ G + ++Q A G + K + + + L E K +
Sbjct: 284 NVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWT 343
Query: 385 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ---VALVPGDAF------G 435
P G +++ +D +++ A+ +AL +
Sbjct: 344 SPTGGYFISVDV----------------VPGTASRVVELAKEAGIALTGAGSSFPLHNDP 387
Query: 436 DDTCIRISYA-ASLTTLQAAVERI 458
++ IR++ + + L+ A++
Sbjct: 388 NNENIRLAPSLPPVAELEVAMDGF 411
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} Length = 427 | Back alignment and structure |
|---|
Score = 131 bits (330), Expect = 9e-34
Identities = 56/435 (12%), Positives = 123/435 (28%), Gaps = 76/435 (17%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT-----PVLIAEAGINAIR 122
+ R+ I + L + L G+P + +L +
Sbjct: 11 DAERIGLFHED----IKRKFDELKSKN-LKLDLTRGKPSSEQLDFADELLALPGKGDFKA 65
Query: 123 EGFTR---YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC--- 176
T Y G +++R L +Q+L + + +I+ V++
Sbjct: 66 ADGTDVRNYGGLDGIVDIRQIWADLL------GVPVEQVLAGDASSLNIMFDVISWSYIF 119
Query: 177 -----------SPGDEVIIPAPFWVSYPEMARI-ADATPVILPTRISENFLLDPKVLESK 224
+ I P P Y I ++ ++E+ D +E
Sbjct: 120 GNNDSVQPWSKEETVKWICPVP---GYDRHFSITERFGFEMISVPMNEDGP-DMDAVEEL 175
Query: 225 LTEKSRLLILCSP--SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT 282
+ + P SNPTG +++ ++ + P V+ D Y
Sbjct: 176 VKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPE 235
Query: 283 SFASLP-----GMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASS 337
+ G R SK G + + G +
Sbjct: 236 VIDIVGLGEAAGNPNRFWAFTSTSKITL-AGAGVSFFLTSAENRKWYTGHAGIRGIGPNK 294
Query: 338 ISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF----LVKSFGELEGVKMSEPQGAFYLF 393
++Q A G V+ K + + + L E + + P G +++
Sbjct: 295 VNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFIS 354
Query: 394 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ---VALVPGDAF------GDDTCIRISY 444
+D + + A+ +AL + ++ +R++
Sbjct: 355 LDV----------------VPGTASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAP 398
Query: 445 A-ASLTTLQAAVERI 458
+ + L+ A++ +
Sbjct: 399 SLPPVEELEVAMDGV 413
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* Length = 335 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 2e-32
Identities = 69/328 (21%), Positives = 123/328 (37%), Gaps = 46/328 (14%)
Query: 97 VIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTP 155
LA E F P + + + Y ++ EL I L + +
Sbjct: 21 KTYLALNENPFPFPEDLVDEVFRRLNSDALRIY-YDSPDEELIEKILSYL---DTDFLSK 76
Query: 156 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 215
+ + V NGA + I +L D + P + Y A+ A + +P ++
Sbjct: 77 NNVSVGNGADEIIYVMMLM----FDRSVFFPPTYSCYRIFAKAVGAKFLEVPLT--KDLR 130
Query: 216 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII 275
+ + ++ + +P+NPTG V+ +EI RI+ V DE Y
Sbjct: 131 IPEVN-----VGEGDVVFIPNPNNPTGHVFE---REEIERILKTGA--FVALDEAY---- 176
Query: 276 YAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA 335
S+ +E + FSKAF++ R+GY+ + F+ A N+++ F
Sbjct: 177 -YEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRLPFNV-- 233
Query: 336 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFID 395
S +SQ AL E+ + K E R+ + + E+ G ++++ +G F
Sbjct: 234 SYVSQMFAKVAL----DHREIFEERTKFIVEERERMKSALREM-GYRITDSRGNFVFV-- 286
Query: 396 FSTYYGSEAEGFGKIENSESLCRYLLDK 423
F + E E L +L K
Sbjct: 287 -----------FMEKEEKERLLEHLRTK 303
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Length = 423 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 7e-31
Identities = 67/417 (16%), Positives = 131/417 (31%), Gaps = 63/417 (15%)
Query: 83 ITDQATALAQAGVSVIRLAAGEPDFDT-PV---LIAEAGINAIREGFTR---YT-PNAGT 134
A G++ + + G+P + L+ G +R Y AG
Sbjct: 14 ARQAYEAFKARGLN-LNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGL 72
Query: 135 LELRSAICHKLKEE-------NGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
R+ L + N S ++++ + + S ++I+ P
Sbjct: 73 PSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVP 132
Query: 188 FWVSYPE-MARIADATPVILPTRISENFLLDPKVLESKLTEKSRL-LILCSP--SNPTGS 243
Y + +L + + D +E + IL P SNP G
Sbjct: 133 ---GYDRHFLLLQTLGFELLTVDMQSDG-PDVDAVERLAGTDPSVKGILFVPTYSNPGGE 188
Query: 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA------PATHTSFASLPGMWERTLTV 297
+A + A P + +D+ Y P A G +R
Sbjct: 189 TISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVF 248
Query: 298 NGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE-- 355
SK G LG++A + + +K + G + + Q V L G E
Sbjct: 249 ASTSKITF-AGAGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGLEGL 307
Query: 356 ---VVSKMVKAFRERRDFLVKSFGEL-EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 411
+ + FR + L GE E + P+G +++ +D
Sbjct: 308 MRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDT--------------- 352
Query: 412 NSESLCRYLLDKAQ---VALVPGDAF------GDDTCIRISYA-ASLTTLQAAVERI 458
+E + ++ A+ V+L P A + +R++ + ++ A++ +
Sbjct: 353 -AEPVADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRPPVEEVRTAMQVV 408
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 6e-10
Identities = 64/494 (12%), Positives = 135/494 (27%), Gaps = 167/494 (33%)
Query: 1 MANSLHSSTSFISNPVNFGHSKIPAQIPGSVSFPSRYLHNFNLNKS--------DRRVLR 52
M L + S I +I + R L + + +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 53 VMA--CSGVEEVQV-----DVSLSPRVNAVKPSKTVAITDQATALAQA-GVSVIRLAAGE 104
C ++ ++ ++A + +++ + L S++
Sbjct: 261 AFNLSC------KILLTTRFKQVTDFLSAATTTH-ISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 105 PDFDTPV-----------LIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSY 153
D P +IAE+ IR+G + +N
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAES----IRDGLATW-------------------DNWKHV 350
Query: 154 TPDQILVSNGAKQSILQAVLAVCSPGDE-------VIIPAPFWVSYPEMARIADATPVIL 206
D++ +I+++ L V P + + F P A I ++
Sbjct: 351 NCDKL-------TTIIESSLNVLEPAEYRKMFDRLSV----F----PPSAHIPTILLSLI 395
Query: 207 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR----IVAKHPR 262
+ ++ D V+ +KL + S L+ P T S+ ++ E+ A H
Sbjct: 396 WFDVIKS---DVMVVVNKLHKYS--LVEKQPKESTISIP--SIYLELKVKLENEYALHRS 448
Query: 263 LL-----------------VLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305
++ L Y HI + H E + F F
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH----HLKNI------EHPERMTLFRMVF- 497
Query: 306 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 365
L + F+ KI + A G + ++ +
Sbjct: 498 -----LDF-----RFLEQ--KI------------RHDSTAWNASGS-----ILNTLQQLK 528
Query: 366 ERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 425
+ ++ + + E + +DF + S+ LL +
Sbjct: 529 FYKPYICDNDPKYERL--------VNAILDFLPKIEE------NLICSKYTD--LL---R 569
Query: 426 VALV-PGDAFGDDT 438
+AL+ +A ++
Sbjct: 570 IALMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 7e-04
Identities = 38/240 (15%), Positives = 68/240 (28%), Gaps = 71/240 (29%)
Query: 265 VLSDEIYEHIIYAPATHTSFASLPGMW----ERTLTVNGFSKA-------FAMTGWR--- 310
+LS E +HII + + L W ++ V F + F M+ +
Sbjct: 45 ILSKEEIDHIIMSKDAVSGTLRL--FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 311 -------LGYIAG-----------PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA 352
YI K+ V+ + + V G+ +
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL-KLRQALLELRPAKNVLIDGVLGS 161
Query: 353 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 412
G K A + V+ KM F+ ++ E +E
Sbjct: 162 G-----KTWVALDVCLSYKVQC-------KM--DFKIFW--LNLKNCNSPETV----LEM 201
Query: 413 SESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERI------KKGLLTLR 466
+ L Y +D + D I + ++QA + R+ + LL L
Sbjct: 202 LQKLL-YQIDPNWTSRS-------DHSSNIKL--RIHSIQAELRRLLKSKPYENCLLVLL 251
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 17/127 (13%), Positives = 48/127 (37%), Gaps = 25/127 (19%)
Query: 156 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA--------RIADATPVILP 207
D V+NGA+++ + ++ V++ E A ++P
Sbjct: 70 DVARVTNGAREAKFAVMHSLAKKDAWVVM--------DENCHYSSYVAAERAGLNIALVP 121
Query: 208 TRISENFLLDPKVLESKLTEKSR-----LLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 262
++ + P+ + E + L ++ P G++ + +IA++ +++
Sbjct: 122 KTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD---VKKIAKVCSEY-D 177
Query: 263 LLVLSDE 269
+ +L +
Sbjct: 178 VPLLVNG 184
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* Length = 393 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 20/97 (20%)
Query: 178 PGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISENFLLDPKVLESKLTEKSRLLIL 234
GDEVI P+ WVS M + A PV + + ++ P+ +E+ +T +++ +I
Sbjct: 78 EGDEVITPSMTWVSTLNMIVLLGANPVMVDVDR----DTLMVTPEHIEAAITPQTKAII- 132
Query: 235 CSPSNP---TGSVYPKNLLDEIARIVAKHPRLLVLSD 268
P G P + LD I + ++ + V+ D
Sbjct: 133 -----PVHYAG--APAD-LDAIYALGERY-GIPVIED 160
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} Length = 424 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 15/79 (18%)
Query: 158 ILVSNG--AKQSILQAVLAVCSPGDEVIIPAPF-WVSYPEMARIADATPV---ILPTRIS 211
+ N LQ + EVI+P + + P R TPV I P
Sbjct: 71 VATCNATAG----LQLLAHAAGLTGEVIMP-SMTFAATPHALRWIGLTPVFADIDP---- 121
Query: 212 ENFLLDPKVLESKLTEKSR 230
+ LDP + + +T ++
Sbjct: 122 DTGNLDPDQVAAAVTPRTS 140
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* Length = 367 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 5e-05
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 30/122 (24%)
Query: 158 ILVSNG--AKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISE 212
I +NG A Q + A L V PGDEVI P +V+ E + A PV I P
Sbjct: 54 ISCANGTDALQIVQMA-LGV-GPGDEVITPGFTYVATAETVALLGAKPVYVDIDP----R 107
Query: 213 NFLLDPKVLESKLTEKSRLLI------LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 266
+ LDP++LE+ +T +++ +I C+ D I I +K+ + V+
Sbjct: 108 TYNLDPQLLEAAITPRTKAIIPVSLYGQCAD------------FDAINAIASKY-GIPVI 154
Query: 267 SD 268
D
Sbjct: 155 ED 156
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* Length = 418 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 7e-05
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 26/120 (21%)
Query: 158 ILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISE 212
+ ++G+ + L L GDEVI+P+ W++ +A PV + +
Sbjct: 61 VPTTSGS--TALMLALEALGIGEGDEVIVPSLTWIATATAVLNVNALPVFVDVEA----D 114
Query: 213 NFLLDPKVLESKLTEKSRLLI----LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 268
+ +DP++++S +T+K++ +I S +N +DEI I +H L V+ D
Sbjct: 115 TYCIDPQLIKSAITDKTKAIIPVHLFGSMAN----------MDEINEIAQEH-NLFVIED 163
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* Length = 399 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 30/122 (24%)
Query: 158 ILVSNG--AKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISE 212
+ V++G A Q L+ L + PGDEVI+P+ +++ ATPV +
Sbjct: 82 VGVNSGMDALQLALRG-LGI-GPGDEVIVPSHTYIASWLAVSATGATPVPVEPHE----D 135
Query: 213 NFLLDPKVLESKLTEKSRLLI------LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 266
+ LDP ++E +T ++R L+ + +D + + +H L ++
Sbjct: 136 HPTLDPLLVEKAITPRTRALLPVHLYGHPAD------------MDALRELADRH-GLHIV 182
Query: 267 SD 268
D
Sbjct: 183 ED 184
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} Length = 374 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 25/119 (21%)
Query: 158 ILVSNG--AKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 215
I V G A + L + GDEVI A +++ A ATPV ++
Sbjct: 57 IGVGTGTDALAMSFKM-LNI-GAGDEVITCANTFIASVGAIVQAGATPV--LVDSENGYV 112
Query: 216 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNL------LDEIARIVAKHPRLLVLSD 268
+DP+ +E+ +T+K++ ++ P + + +A+I KH L ++ D
Sbjct: 113 IDPEKIEAAITDKTKAIM------------PVHYTGNIADMPALAKIAKKH-NLHIVED 158
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} Length = 373 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 30/122 (24%)
Query: 158 ILVSNG--AKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISE 212
I NG A IL+ + GDEVI+P+ +++ A P+
Sbjct: 55 IGCGNGLDALHLILKG-YDI-GFGDEVIVPSNTFIATALAVSYTGAKPIFVEPDI----R 108
Query: 213 NFLLDPKVLESKLTEKSRLLI------LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 266
+ +DP ++ES +TEK++ +I + +DEI RI K+ L ++
Sbjct: 109 TYNIDPSLIESAITEKTKAIIAVHLYGQPAD------------MDEIKRIAKKY-NLKLI 155
Query: 267 SD 268
D
Sbjct: 156 ED 157
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} Length = 446 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 40/264 (15%), Positives = 80/264 (30%), Gaps = 49/264 (18%)
Query: 162 NGAKQSILQAVLAVCSPGDEVIIP---------APFWVSYPEMARIADATPVILPTRISE 212
NG IL + + ++++ A I+ + T S
Sbjct: 79 NGTTSGILSVIQSFSQKKGDILMARNVHKSVLHA---------LDISQQEGHFIETHQSP 129
Query: 213 NFLLDPKVLESKLTEKS-RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 271
KV S+L +L++L P N G + ++E+ + + + I
Sbjct: 130 LTNHYNKVNLSRLNNDGHKLVVLTYP-NYYGETFN---VEEVIKSLHQL--------NIP 177
Query: 272 EHIIYAPATHTSFASLPG---MWERTLTVNGFSK---AFAMTGWRL--GYIAGPKHFVAA 323
I A H P ++ V F K A M ++ +
Sbjct: 178 VLIDEAHGAHFGLQGFPDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEY 237
Query: 324 CNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 383
+ Q+ +S + I AA + A R + +++ G +M
Sbjct: 238 LSYFQT--SSPSYLIMASLESAAQFYKTYDST----LFFAKRAQLIECLENK----GFEM 287
Query: 384 SEPQGAFYLFIDFSTYYGSEAEGF 407
+ L I + + G + + +
Sbjct: 288 LQVDDPLKLLIKYEGFTGHDIQNW 311
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* Length = 390 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 20/120 (16%)
Query: 158 ILVSNG--AKQSILQAVLAVCS----PGDEVIIPAPFWVSYPEMARIADATPV---ILPT 208
++VS+G A ++ A+ GDE+I+PA W + + I
Sbjct: 53 VMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDI- 111
Query: 209 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 268
+D + L+ +T+ ++ ++ N G P N DEI +I+ +++L D
Sbjct: 112 ---NTLNIDIESLKEAVTDSTKAIL---TVNLLG--NPNN-FDEINKIIGGR-DIILLED 161
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* Length = 388 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 178 PGDEVIIPAPF-WVSYPEMARIADATPV---ILPTRISENFLLDPKVLESKLTEKSR 230
PG EVI+P F ++S + A+ A V + + LDP+ + + +T +++
Sbjct: 77 PGTEVIVP-AFTFISSSQAAQRLGAVTVPVDVDA----ATYNLDPEAVAAAVTPRTK 128
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* Length = 375 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 4e-04
Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 17/96 (17%)
Query: 178 PGD--EVIIPAPFWVSYPEMARIADATPV---ILPTRISENFLLDPKVLESKLTEKSRLL 232
D E+I +V+ M + TPV I +D LE + E+++ +
Sbjct: 71 SADRNEIITTPISFVATANMLLESGYTPVFAGIKND-----GNIDELALEKLINERTKAI 125
Query: 233 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 268
+ + G ++ + ++ KH L LSD
Sbjct: 126 V---SVDYAG--KSVE-VESVQKLCKKH-SLSFLSD 154
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 6e-04
Identities = 43/265 (16%), Positives = 86/265 (32%), Gaps = 40/265 (15%)
Query: 163 GAKQSILQAVLA----------VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE 212
G +S+L A+ + +P E ++P ++ + A+ V P +
Sbjct: 168 GGTESLLLAMKTYRDWARATKGITAP--EAVVPVSAHAAFDKAAQYFGIKLVRTP--LDA 223
Query: 213 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 272
++ D + +T + ++ +P P G V P + EIA + A+H + +
Sbjct: 224 DYRADVAAMREAITPNTVVVAGSAPGYPHGVVDP---IPEIAALAAEHGIGCHVDACLGG 280
Query: 273 HIIYAPATHTS-----FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG--PKHFVAACN 325
I+ L G+ + + + T L + A +
Sbjct: 281 FILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAAD 340
Query: 326 ---KIQSQFT-----SGASSISQKAGVAALGL-GYAGGEVVSKMVKAFRERRDFLVKSFG 376
+ T GA S + A + +LG GY + + D L
Sbjct: 341 WPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYL------DATRRILQAADRLKAGVR 394
Query: 377 ELEGVK-MSEPQGAFYLFIDFSTYY 400
+ +K + +P + D Y
Sbjct: 395 AIPSLKILGDPLWVIAVASDELNIY 419
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 471 | |||
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 100.0 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 100.0 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 100.0 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 100.0 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 100.0 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 100.0 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 100.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 100.0 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 100.0 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 100.0 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 100.0 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 100.0 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 100.0 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 100.0 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 100.0 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 100.0 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 100.0 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 100.0 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 100.0 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 100.0 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 100.0 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 100.0 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 100.0 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 100.0 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 100.0 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 100.0 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 100.0 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 100.0 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 100.0 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 100.0 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 100.0 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 100.0 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 100.0 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 100.0 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 100.0 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 100.0 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 100.0 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 100.0 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 100.0 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 100.0 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 100.0 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 100.0 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 100.0 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 100.0 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 100.0 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 100.0 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 100.0 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 100.0 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 100.0 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 100.0 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 100.0 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 100.0 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 100.0 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 100.0 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 100.0 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 100.0 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 100.0 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 100.0 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 100.0 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 100.0 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 100.0 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 100.0 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 100.0 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 100.0 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 100.0 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 100.0 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 100.0 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 100.0 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 100.0 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 100.0 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 100.0 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 100.0 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 100.0 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 100.0 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 100.0 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 100.0 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 100.0 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 100.0 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 100.0 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 100.0 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 100.0 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 100.0 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 100.0 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 100.0 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 100.0 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 100.0 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 100.0 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 100.0 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 100.0 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 100.0 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 100.0 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 100.0 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 100.0 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 100.0 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 100.0 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 100.0 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 100.0 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 100.0 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 100.0 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 100.0 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 100.0 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 100.0 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 100.0 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 100.0 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 100.0 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 100.0 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 100.0 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 100.0 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 100.0 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 100.0 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 100.0 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 100.0 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 100.0 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 100.0 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 100.0 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 100.0 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 100.0 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 100.0 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 100.0 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 100.0 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 100.0 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 100.0 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 100.0 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 100.0 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 100.0 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 100.0 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 100.0 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 100.0 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 100.0 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 100.0 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 100.0 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 100.0 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 100.0 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 100.0 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 100.0 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 100.0 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 100.0 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 100.0 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 100.0 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 100.0 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 100.0 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 100.0 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 100.0 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 100.0 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 100.0 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 100.0 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 100.0 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.98 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.98 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.98 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.98 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.98 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.97 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.97 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.97 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.97 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.97 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.97 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.97 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.97 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.97 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.97 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.97 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.97 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.97 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.97 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.97 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.97 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.97 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.97 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.97 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.97 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.97 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.97 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.97 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.97 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.96 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.96 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.96 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.96 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.96 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.96 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.96 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.96 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.96 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.95 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.95 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.95 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.95 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.95 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.95 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.95 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.95 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.95 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.95 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.94 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.9 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.94 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.94 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.94 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.94 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.94 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.94 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.94 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.93 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.92 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.92 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.92 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.91 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.91 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.91 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.89 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.84 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.84 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.82 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.81 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.79 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.77 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.77 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.71 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.7 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.64 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.58 |
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-57 Score=457.45 Aligned_cols=380 Identities=43% Similarity=0.709 Sum_probs=338.8
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~ 147 (471)
+++++..++++++.++...+.++...|+++|+|+.|+|++++|+.+.+++.+++..+..+|++..|..+||+++++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~ 83 (385)
T 1b5p_A 4 LSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRR 83 (385)
T ss_dssp CCHHHHHCCCCHHHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHH
T ss_pred hhhHHhhcCcchHHHHHHHHHHHHhcCCCEEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 67788889999888888888777777888999999999998899999999998877677898888999999999999999
Q ss_pred HhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc
Q 012095 148 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 227 (471)
Q Consensus 148 ~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~ 227 (471)
.+|.++++++|++|+|+++++..+++++++|||+|++++|+|+.|...++..|++++.++++.+++|.+|++++++++++
T Consensus 84 ~~g~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 163 (385)
T 1b5p_A 84 ENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP 163 (385)
T ss_dssp TTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCT
T ss_pred HhCCCCChHHEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCC
Confidence 89988889999999999999999999999999999999999999999999999999999998656788999999999988
Q ss_pred CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCcc
Q 012095 228 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307 (471)
Q Consensus 228 ~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 307 (471)
++++|++++||||||.++|.+++++|+++|++| +++||+||+|.++.+++ ...++..+.. +++++++||||.+|++
T Consensus 164 ~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~-~~~~~~~~~~--~~~i~~~s~SK~~~~~ 239 (385)
T 1b5p_A 164 RTKALVVNSPNNPTGAVYPKEVLEALARLAVEH-DFYLVSDEIYEHLLYEG-EHFSPGRVAP--EHTLTVNGAAKAFAMT 239 (385)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBSSS-CCCCGGGTCT--TTEEEEEESTTTTTCG
T ss_pred CCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHc-CCEEEEEccchhcccCC-CCCCHHHcCC--CCEEEEEechhhcCCc
Confidence 899999999999999999999999999999999 99999999999998876 4456666643 7899999999999999
Q ss_pred chhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC
Q 012095 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (471)
Q Consensus 308 G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~ 387 (471)
|+|+||+++++++++.+.........+++.+.|.++.++|+......+++++.++.++++++++.+.|+++ |+.+..|+
T Consensus 240 G~RiG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 318 (385)
T 1b5p_A 240 GWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLKAVRPS 318 (385)
T ss_dssp GGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCS
T ss_pred ccceEEEEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCC
Confidence 99999999999999999988777777899999999999996300014678899999999999999999988 89988999
Q ss_pred cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012095 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLL 463 (471)
Q Consensus 388 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~ 463 (471)
++||+|++++.. + .+..++.+.|+ ++||.+.||..|+.++++|||++.+++++++++++|+++++
T Consensus 319 ~~~~~~~~~~~~-~---------~~~~~l~~~l~-~~gv~v~~g~~f~~~~~iRis~~~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 319 GAFYVLMDTSPI-A---------PDEVRAAERLL-EAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARVLG 383 (385)
T ss_dssp BTTEEEEECTTT-C---------SSHHHHHHHHH-HTTEECEESGGGTCTTEEEEECCSCHHHHHHHHHHGGGGC-
T ss_pred eeEEEEEecCCC-C---------CCHHHHHHHHH-HCCeEEecccccCCCCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence 999999998631 1 26788999988 45999999999987889999999999999999999987764
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-55 Score=440.55 Aligned_cols=384 Identities=46% Similarity=0.804 Sum_probs=342.1
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~ 147 (471)
+++++..++++.+..+...+.+....|+++|+|+.|++++++|+.+.+++.+++.++..+|++..|..++|+++++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~ 82 (388)
T 1j32_A 3 LAARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQR 82 (388)
T ss_dssp CCHHHHTSCCCSSTTTHHHHHHHHTTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHH
T ss_pred hhhHhHhCCccHHHHHHHHHHHHHhcCCCEEECCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 56677778887777777777777777889999999999988889999999998877667898888999999999999999
Q ss_pred HhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc
Q 012095 148 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 227 (471)
Q Consensus 148 ~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~ 227 (471)
.+|.++++++|++|+|+++++..++++++++||+|++++|+|+++...++..|++++.++++.+++|.+|+++|++++++
T Consensus 83 ~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 162 (388)
T 1j32_A 83 DNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITP 162 (388)
T ss_dssp HHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCT
T ss_pred hcCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCc
Confidence 99988888999999999999999999999999999999999999999999999999999987655788999999999988
Q ss_pred CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCC-CCCceEEEecCCcccCc
Q 012095 228 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG-MWERTLTVNGFSKAFAM 306 (471)
Q Consensus 228 ~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~g~ 306 (471)
++++|++++|+||||.++|.+++++|+++|++| |++||+||+|.++.+++....++..+.. ..++++++.||||.+|+
T Consensus 163 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~ 241 (388)
T 1j32_A 163 KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEA-GLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAM 241 (388)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTC
T ss_pred CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCC
Confidence 899999999999999999999999999999999 9999999999999887655555555542 14688999999999999
Q ss_pred cchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC
Q 012095 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (471)
Q Consensus 307 ~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p 386 (471)
+|+|+||+++++++++.+.......+++++.+.|.++.++|+. ..+++++++++++++++++.+.|++++|+++..|
T Consensus 242 ~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 318 (388)
T 1j32_A 242 TGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYEN---SQDCVQEMLAAFAERRRYMLDALNAMPGLECPKP 318 (388)
T ss_dssp TTTCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHS---CSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCC
T ss_pred cccceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCC
Confidence 9999999999999999998887777788999999999999985 3678999999999999999999999889999889
Q ss_pred CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhh
Q 012095 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 387 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~~~ 465 (471)
.+++|+|++++.. + .+..++++.|++++||.+.||..|+.++++|++++.+++++++++++|+++++++
T Consensus 319 ~~~~~~~~~~~~~-~---------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 319 DGAFYMFPSIAKT-G---------RSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp CBTTEECCBCGGG-T---------CCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred CeeEEEEEecCCC-C---------CCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 9999999988641 0 2678899998875699999999998889999999999999999999999998765
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-54 Score=435.11 Aligned_cols=376 Identities=26% Similarity=0.420 Sum_probs=330.1
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~ 147 (471)
++ ++..++++.+.++...+.++...|+++|+|+.|++++++|+.+.+++.+++.++..+|++..|..++|+++++++++
T Consensus 5 ~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~ 83 (391)
T 3h14_A 5 NS-SRSAVDPFIVMDVMEAARRAEEAGRRIIHMEVGQPGTGAPRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGE 83 (391)
T ss_dssp CC-STTCCCCCTTHHHHHHHHHHHHTTCCCEECCCSSCSSCSCHHHHHHHHHHHC----------CCHHHHHHHHHHHHH
T ss_pred hh-hHhhcCcchHHHHHHHHHHHHhcCCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHH
Confidence 44 78888899999999988888889999999999999999999999999998876678898888999999999999999
Q ss_pred HhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc
Q 012095 148 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 227 (471)
Q Consensus 148 ~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~ 227 (471)
.+|+++++++|++|+|+++++..++++++++||+|+++.|+|.++...++..|++++.++++.+++|.+|+++++++
T Consensus 84 ~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~--- 160 (391)
T 3h14_A 84 WYGVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL--- 160 (391)
T ss_dssp HHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS---
T ss_pred HhCCCCCHHHEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc---
Confidence 99988899999999999999999999999999999999999999999999999999999998777788999999987
Q ss_pred CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCcc
Q 012095 228 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307 (471)
Q Consensus 228 ~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 307 (471)
++++|++++|+||||.+++.+++++|+++|++| +++||+||+|.++.+++. ..++..+ .+++++++||||.+|++
T Consensus 161 ~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~-~~~~~~~---~~~~i~~~s~sK~~g~~ 235 (391)
T 3h14_A 161 DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQ-GASFISDEIYHGIEYEAK-AVTALEL---TDECYVINSFSKYFSMT 235 (391)
T ss_dssp CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBSSSC-CCCGGGT---CSSSEEEEESSSTTCCT
T ss_pred CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHc-CCEEEEECcchhcccCCC-CcChhhc---CCCEEEEEechhccCCc
Confidence 789999999999999999999999999999999 999999999999988764 2333333 47889999999999999
Q ss_pred chhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC
Q 012095 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (471)
Q Consensus 308 G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~ 387 (471)
|+|+||+++++++++.+......++++++.+.|.++.++|. ..+++++.+++++++++.+.+.|++++...+..|+
T Consensus 236 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 311 (391)
T 3h14_A 236 GWRVGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAALD----CDAELQANLDVYKANRKLMLERLPKAGFTRIAPPD 311 (391)
T ss_dssp TSCCEEEECCGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCC
T ss_pred cceeEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhC----ChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC
Confidence 99999999999999999988888888899999999988887 37889999999999999999999988334446789
Q ss_pred cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012095 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAASLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 388 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~---~~~iRis~~~~~e~i~~~~~~l~~~l~~ 464 (471)
+++|+|++++... .+..+++++|++++||.+.||+.|+. ++++|++++.+++++++++++|++++++
T Consensus 312 ~~~~~~~~~~~~~----------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~~~~ 381 (391)
T 3h14_A 312 GAFYVYADVSDLT----------DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYARATADIEEGLDRLEAFMQA 381 (391)
T ss_dssp BTTEEEEECTTTC----------SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEecCccC----------CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 9999999987521 26889999998877999999999986 5799999999999999999999999986
Q ss_pred hC
Q 012095 465 LR 466 (471)
Q Consensus 465 ~~ 466 (471)
..
T Consensus 382 ~~ 383 (391)
T 3h14_A 382 RG 383 (391)
T ss_dssp C-
T ss_pred hc
Confidence 53
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-54 Score=437.46 Aligned_cols=386 Identities=26% Similarity=0.412 Sum_probs=324.8
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLK 146 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~ 146 (471)
+++++..++++.+..+...+......|+++|+|+.|++++++++.+.+++.+++.+. ..+|++..|..++|+++++++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~ 89 (412)
T 2x5d_A 10 RFARIDRLPPYVFNITAELKMAARRRGEDIIDLSMGNPDGPTPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYR 89 (412)
T ss_dssp -----------CHHHHHHHHHHHHHTTCCCEECSSCCCCSCCCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHH
T ss_pred hhHHHhhcCchHHHHHHHHHHHHhhcCCCEEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHH
Confidence 567777888887777777666666778899999999999888899999998877653 4679888999999999999999
Q ss_pred HHhCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhh
Q 012095 147 EENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL 225 (471)
Q Consensus 147 ~~~g~~~~~-~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l 225 (471)
+.+|.++++ ++|++|+|+++++..++++++++||+|++++|+|+++...++..|++++.++++.+++|.+|++++++++
T Consensus 90 ~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i 169 (412)
T 2x5d_A 90 DRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRES 169 (412)
T ss_dssp HHHCCCCCTTTSEEEESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTE
T ss_pred HHhCCCCCCCcCEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhc
Confidence 888987788 7999999999999999999999999999999999999999999999999999986557778999999999
Q ss_pred ccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccC
Q 012095 226 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305 (471)
Q Consensus 226 ~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 305 (471)
++++++|++++||||||.+++.+++++|+++|++| +++||+||+|..+.+++....++..+....++++++.||||.+|
T Consensus 170 ~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~ 248 (412)
T 2x5d_A 170 IPKPRMMILGFPSNPTAQCVELDFFERVVALAKQY-DVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYN 248 (412)
T ss_dssp ESCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCS
T ss_pred ccCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHc-CCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccC
Confidence 88899999999999999999999999999999999 99999999999998866545566665433578999999999999
Q ss_pred ccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC
Q 012095 306 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385 (471)
Q Consensus 306 ~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~ 385 (471)
++|+|+||+++++++++.+.......+++++.++|.++.++|+. ..++++++++.++++++++.+.|+++ |+.+..
T Consensus 249 ~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 324 (412)
T 2x5d_A 249 MAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEG---DQQCVRDIARQYQQRRDVLVKGLREA-GWMVEN 324 (412)
T ss_dssp CTTSCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHS---CSHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCC
T ss_pred CcccceEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHC-CCEecC
Confidence 99999999999999999998877766778999999999999986 35789999999999999999999988 888888
Q ss_pred CCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012095 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLL 463 (471)
Q Consensus 386 p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~l~ 463 (471)
|.+|+|+|++++...+ ..+..++++.|++++||.+.||..|+. ++++||+++.+++++++++++|.++++
T Consensus 325 ~~~g~~~~~~~~~~~~--------~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~l~ 396 (412)
T 2x5d_A 325 PKASMYVWAKIPEPYA--------HLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIENRDRLRQAVRGIKAMFR 396 (412)
T ss_dssp CSBSSEEEEECCTTTG--------GGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred CCeeeEEEEEcCCccC--------CCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 8999999999974310 014678999988766999999998863 579999999999999999999999998
Q ss_pred hhC
Q 012095 464 TLR 466 (471)
Q Consensus 464 ~~~ 466 (471)
++.
T Consensus 397 ~~~ 399 (412)
T 2x5d_A 397 ADG 399 (412)
T ss_dssp HTT
T ss_pred hcC
Confidence 754
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-53 Score=429.96 Aligned_cols=380 Identities=43% Similarity=0.678 Sum_probs=334.3
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~ 147 (471)
+++++..++++.+..+.+.+.. .+++|+|+.|++++++|+.+.+++.+++.++..+|++..|..++|+++++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~----~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~ 78 (389)
T 1gd9_A 3 LSDRLELVSASEIRKLFDIAAG----MKDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKK 78 (389)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHT----CSSCEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHH
T ss_pred hhhHhHhCChhHHHHHHHHHhh----hcCeEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHH
Confidence 5677888888887777665432 256999999999988889999999999877667898888999999999999999
Q ss_pred HhCCCCCCCc-EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc
Q 012095 148 ENGLSYTPDQ-ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 226 (471)
Q Consensus 148 ~~g~~~~~~~-i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~ 226 (471)
.+|.++++++ |++|+|+++++..++++++++||.|++++|+|+++...++..|++++.+|++.+++|.+|+++|+++++
T Consensus 79 ~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~ 158 (389)
T 1gd9_A 79 QNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVT 158 (389)
T ss_dssp HHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCC
T ss_pred HhCCCCCCCCeEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcC
Confidence 8898778899 999999999999999999999999999999999999999999999999998765568899999999998
Q ss_pred cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCc
Q 012095 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (471)
Q Consensus 227 ~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~ 306 (471)
+++++|++++||||||.++|.+++++|+++|++| |++||+||+|.++.+++....++..+.+..++++++.||||.+|+
T Consensus 159 ~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 237 (389)
T 1gd9_A 159 DKTRALIINSPCNPTGAVLTKKDLEEIADFVVEH-DLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAM 237 (389)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTC
T ss_pred cCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCC
Confidence 8899999999999999999999999999999999 999999999999988764344555554435789999999999999
Q ss_pred cchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChH--HHHHHHHHHHHHHHHHHHHhcCCCCCeee
Q 012095 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE--VVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (471)
Q Consensus 307 ~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~--~~~~~~~~~~~~r~~l~~~L~~~~g~~~~ 384 (471)
+|+|+||+++++++++.+........++++.+.|.++.++|+. ... +++++++.++++++++.+.|+++ |+++.
T Consensus 238 ~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 313 (389)
T 1gd9_A 238 TGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKD---ERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTV 313 (389)
T ss_dssp GGGCCEEEECCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCC
T ss_pred cccceEEEEECHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhC---CCcchHHHHHHHHHHHHHHHHHHHHHHc-CCeec
Confidence 9999999999999999998887777778999999999999985 244 78999999999999999999988 89888
Q ss_pred CCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHH
Q 012095 385 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGL 462 (471)
Q Consensus 385 ~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~l 462 (471)
.|.+++|+|++++.. + .+..++++.|++++||.+.||..|+. ++++|++++.+++++++++++|++++
T Consensus 314 ~~~~~~~~~~~~~~~-~---------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~~ 383 (389)
T 1gd9_A 314 KPKGAFYIFPRIRDT-G---------LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVL 383 (389)
T ss_dssp CCCBTTEECCBCGGG-T---------CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHH
T ss_pred CCCeeeEEEEeccCC-C---------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 899999999988741 0 26788999988566999999998874 57999999999999999999999999
Q ss_pred HhhC
Q 012095 463 LTLR 466 (471)
Q Consensus 463 ~~~~ 466 (471)
++.+
T Consensus 384 ~~~~ 387 (389)
T 1gd9_A 384 KERK 387 (389)
T ss_dssp HHTT
T ss_pred Hhcc
Confidence 8754
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-54 Score=436.27 Aligned_cols=390 Identities=28% Similarity=0.504 Sum_probs=338.5
Q ss_pred cccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCC--CCCCCCCCCHHHHHHHHHH
Q 012095 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGF--TRYTPNAGTLELRSAICHK 144 (471)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~--~~Y~~~~G~~~lr~~ia~~ 144 (471)
.+++++..++++.+.++.+.+ .++++|+|+.|+|++++|+.+.+++.+++.++. .+|++..|..++|++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~ 79 (422)
T 3fvs_A 5 LQARRLDGIDYNPWVEFVKLA-----SEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASF 79 (422)
T ss_dssp CSCGGGTTCCCCHHHHHHHHH-----HTSCCEECCCSSCSSCCCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHH
T ss_pred hHHHHhhccCccHHHHHHHHh-----hcCCceEeCCCCCCCCCCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHH
Confidence 367788888888877765543 245799999999999999999999999987654 6898888999999999999
Q ss_pred HHHHhCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCC----------CCC
Q 012095 145 LKEENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI----------SEN 213 (471)
Q Consensus 145 ~~~~~g~~~~~-~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~----------~~~ 213 (471)
+++.+|+++++ ++|++|+|+++++..++++++++||+|++++|+|.+|...++..|++++.++++. +++
T Consensus 80 ~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~ 159 (422)
T 3fvs_A 80 FGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSN 159 (422)
T ss_dssp HHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGG
T ss_pred HHHhhCCCCCCCCcEEEECChHHHHHHHHHHHcCCCCEEEEcCCCchhhHHHHHHcCCEEEEEecccccccccccccccC
Confidence 99999988888 7999999999999999999999999999999999999999999999999999975 236
Q ss_pred CcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCc
Q 012095 214 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 293 (471)
Q Consensus 214 ~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~ 293 (471)
|.+|++++++++++++++|++++||||||.+++.+++++|+++|++| |++||+||+|.++.+++....++..+....++
T Consensus 160 ~~~d~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~ 238 (422)
T 3fvs_A 160 WQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQH-DVVCITDEVYQWMVYDGHQHISIASLPGMWER 238 (422)
T ss_dssp SBCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSTTTGGG
T ss_pred CCCCHHHHHhhcCCCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHc-CcEEEEEccchhhccCCCCCCChhhcccccCc
Confidence 78999999999998999999999999999999999999999999999 99999999999999987666677777655689
Q ss_pred eEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhc-----cCCChHHHHHHHHHHHHHH
Q 012095 294 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL-----GYAGGEVVSKMVKAFRERR 368 (471)
Q Consensus 294 ~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~-----~~~~~~~~~~~~~~~~~~r 368 (471)
++++.||||.+|++|+|+||+++++++++.+........++++++.|.++.++|.. +. ..++++++++.+++++
T Consensus 239 ~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~ 317 (422)
T 3fvs_A 239 TLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQ-PSSYFVQFPQAMQRCR 317 (422)
T ss_dssp EEEEEEHHHHHTCGGGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTC-TTCHHHHHHHHHHHHH
T ss_pred EEEEecchhccCCccceEEEEEeCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccc-hHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998887777788999999999999974 22 2578899999999999
Q ss_pred HHHHHHhcCCCCCeeeCCCcceEEeEecCCccC-Cc-ccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------CCc
Q 012095 369 DFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG-SE-AEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------DTC 439 (471)
Q Consensus 369 ~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~-------~~~ 439 (471)
+++.+.|+++ |+.+..|++++|+|++++.... .. ..+........+++++|++++||.+.||+.|+. +++
T Consensus 318 ~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~ 396 (422)
T 3fvs_A 318 DHMIRSLQSV-GLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHY 396 (422)
T ss_dssp HHHHHHHHTT-TCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSE
T ss_pred HHHHHHHHHc-CCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCe
Confidence 9999999998 9998899999999999864210 00 000000001568899888878999999999863 589
Q ss_pred EEEEeecCHHHHHHHHHHHHHHHHh
Q 012095 440 IRISYAASLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 440 iRis~~~~~e~i~~~~~~l~~~l~~ 464 (471)
+||+++.++++|++++++|++++++
T Consensus 397 iRis~~~~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 397 IRFCFVKDEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHHHC
T ss_pred EEEEecCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999875
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-54 Score=445.93 Aligned_cols=383 Identities=23% Similarity=0.415 Sum_probs=326.3
Q ss_pred cCCChHHHHHHHHHHH----HhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHHHh
Q 012095 75 VKPSKTVAITDQATAL----AQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEEN 149 (471)
Q Consensus 75 ~~~~~~~~~~~~~~~~----~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~ 149 (471)
++++.+..+.+.+..+ +..++++|+|+.|.|++++|+.+.+++.+++.+ +..+|++..|..+||+++++++.+.+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~ 112 (447)
T 3b46_A 33 TAKDVWSLTNEAAAKAANNSKNQGRELINLGQGFFSYSPPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIY 112 (447)
T ss_dssp CCCCHHHHHHHHHHHHCCC---TTSCCEECCCCSCSSCCCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTT
T ss_pred cCccHHHHHHHHHHhhccchhccCCCeEEccCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 6677777776665443 235778999999999999999999999998865 45789888899999999999999888
Q ss_pred CCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCC----------CCcCCHH
Q 012095 150 GLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE----------NFLLDPK 219 (471)
Q Consensus 150 g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~----------~~~ld~e 219 (471)
|.++++++|++|+|+++++..+++++++|||+|++++|+|..|...++..|++++.+++++++ +|.+|++
T Consensus 113 g~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~ 192 (447)
T 3b46_A 113 NTELKAENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFE 192 (447)
T ss_dssp TSCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHH
T ss_pred CCCCChhhEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHH
Confidence 988888999999999999999999999999999999999999999999999999999987543 6789999
Q ss_pred HHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccC-CCCCCceEEEe
Q 012095 220 VLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVN 298 (471)
Q Consensus 220 ~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~-~~~~~~~i~~~ 298 (471)
+|++++++++++|++++||||||.+++.+++++|+++|++| |++||+||+|.++.|++ ...++..+ ++..+++++++
T Consensus 193 ~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~-~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~~i~i~ 270 (447)
T 3b46_A 193 QFEKAITSKTKAVIINTPHNPIGKVFTREELTTLGNICVKH-NVVIISDEVYEHLYFTD-SFTRIATLSPEIGQLTLTVG 270 (447)
T ss_dssp HHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCSS-CCCCGGGSCHHHHTTEEEEE
T ss_pred HHHHhhccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHc-CcEEEEeccchhcccCC-CCcCHHHcCCCCCCcEEEEe
Confidence 99999988899999999999999999999999999999999 99999999999998876 33455554 22357899999
Q ss_pred cCCcccCccchhheeeEc-CHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC
Q 012095 299 GFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377 (471)
Q Consensus 299 S~SK~~g~~G~R~G~v~~-~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 377 (471)
||||.+|++|||+||+++ ++++++.+........++++++.|.++.++|+... .+.+++++++.++++++++.+.|++
T Consensus 271 S~sK~~~~~G~riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~ 349 (447)
T 3b46_A 271 SAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDAL-KIGYFEKMRQEYINKFKIFTSIFDE 349 (447)
T ss_dssp EHHHHTTCTTSCCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchhcCCcchhhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCc-chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999887766777889999999999998621 1567899999999999999999998
Q ss_pred CCCCeeeCCCcceEEeEecCCccCCcccC----CCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------CCcEEEEeec
Q 012095 378 LEGVKMSEPQGAFYLFIDFSTYYGSEAEG----FGKIENSESLCRYLLDKAQVALVPGDAFGD-------DTCIRISYAA 446 (471)
Q Consensus 378 ~~g~~~~~p~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~-------~~~iRis~~~ 446 (471)
+ |+.+..|++|+|+|++++...-+.... .+...+..+++++|++++||.+.||+.|+. ++++||+++.
T Consensus 350 ~-g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~ 428 (447)
T 3b46_A 350 L-GLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCK 428 (447)
T ss_dssp H-TCCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCS
T ss_pred C-CCeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeC
Confidence 8 888888999999999997520000000 000024668999998777999999998864 5799999999
Q ss_pred CHHHHHHHHHHHHHH
Q 012095 447 SLTTLQAAVERIKKG 461 (471)
Q Consensus 447 ~~e~i~~~~~~l~~~ 461 (471)
++++|++++++|+++
T Consensus 429 ~~e~l~~~~~~l~~~ 443 (447)
T 3b46_A 429 DDAYLENAVERLKLL 443 (447)
T ss_dssp CHHHHHHHHHHGGGG
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999873
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-53 Score=438.61 Aligned_cols=379 Identities=19% Similarity=0.355 Sum_probs=331.2
Q ss_pred cccccccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCC--ChHHHHHHHHHHHHcC---CCCCCCCCCCHHH
Q 012095 63 QVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFD--TPVLIAEAGINAIREG---FTRYTPNAGTLEL 137 (471)
Q Consensus 63 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~--~p~~v~~a~~~~~~~~---~~~Y~~~~G~~~l 137 (471)
+|+..++.+...++++.+.++.+... ++++|+|+.|.|+.. +++.+.+++.+++.+. ..+|++..|..+|
T Consensus 49 ~~~~~~s~~~~~~~~s~~~~~~~~~~-----~~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~l 123 (448)
T 3aow_A 49 DVERFFSKKALEMRASEVRELLKLVE-----TSDIISLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPL 123 (448)
T ss_dssp CGGGGCCHHHHHCCCCHHHHHHHHHH-----TSSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHH
T ss_pred chHHHhhHHHhcCCCcHHHHHHHhcc-----CCCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHH
Confidence 46667899999999998877655322 457999999998754 6788999998888653 3689888999999
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCC
Q 012095 138 RSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLD 217 (471)
Q Consensus 138 r~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld 217 (471)
|+++++++.+.+|.+ ++++|++|+|+++++..++++++++||+|++++|+|.++...++..|++++.+|++.+ ++|
T Consensus 124 r~~ia~~~~~~~g~~-~~~~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d 199 (448)
T 3aow_A 124 RETLMKWLGKRYGIS-QDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDE---GMK 199 (448)
T ss_dssp HHHHHHHHHHHHCCC-TTSEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT---EEC
T ss_pred HHHHHHHHHHhcCcC-ChhhEEEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEeccCCC---CCC
Confidence 999999998888977 8899999999999999999999999999999999999999999999999999998753 389
Q ss_pred HHHHHhhhc----c--CCcEEE-EcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCC
Q 012095 218 PKVLESKLT----E--KSRLLI-LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 290 (471)
Q Consensus 218 ~e~l~~~l~----~--~~~~i~-i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~ 290 (471)
+++|+++++ + ++++|+ +++|+||||.+++.+++++|+++|++| |++||+||+|.++.+++....++..++.
T Consensus 200 ~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~-~~~lI~De~y~~~~~~g~~~~~~~~~~~- 277 (448)
T 3aow_A 200 VEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEY-DFIVVEDDPYGELRYSGNPEKKIKALDN- 277 (448)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECSCTTCBCSSCCCCCTGGGCT-
T ss_pred HHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHc-CCEEEEECCCccccCCCCCCcCHHhcCC-
Confidence 999999987 5 788885 699999999999999999999999999 9999999999999987765566666643
Q ss_pred CCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Q 012095 291 WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 370 (471)
Q Consensus 291 ~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~ 370 (471)
.+++++++||||.++ +|+|+||+++++++++.+.......++++++++|.++.++|+.+. ..++++++++.|++++++
T Consensus 278 ~~~vi~~~S~SK~~~-~GlriG~v~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~-~~~~~~~~~~~~~~~~~~ 355 (448)
T 3aow_A 278 EGRVIYLGTFSKILA-PGFRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGY-LEKHIPEIRKFYKPRRDA 355 (448)
T ss_dssp TSCEEEEEESTTTTC-GGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEccchhhcc-ccccEEEEEeCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHH
Confidence 578999999999999 999999999999999999888777777889999999999998631 157899999999999999
Q ss_pred HHHHhcC-CC-CCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC----CCcEEEEe
Q 012095 371 LVKSFGE-LE-GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD----DTCIRISY 444 (471)
Q Consensus 371 l~~~L~~-~~-g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~----~~~iRis~ 444 (471)
+.+.|++ +| |+.+..|.+|+|+|++++.. .+..+++++|+++ ||.+.||..|+. ++++|+++
T Consensus 356 l~~~L~~~~~~g~~~~~p~~g~~~~v~~~~~-----------~~~~~l~~~l~~~-gV~v~pg~~f~~~~~~~~~iRls~ 423 (448)
T 3aow_A 356 MLEALEEFMPEGVKWTKPEGGMFIWVTLPDG-----------IDSKKMLERAIKK-GVAYVPGEAFYAHRDVKNTMRLNF 423 (448)
T ss_dssp HHHHHHHHCCTTCEECCCSBSSEEEEECSTT-----------CCHHHHHHHHHHT-TEECEEGGGGSTTCCCCSEEEEEC
T ss_pred HHHHHHHhCCCCeEEeCCCccEEEEEEcCCC-----------CCHHHHHHHHHHC-CcEEEcchhhcCCCCCCCEEEEEe
Confidence 9999987 57 69988899999999999753 2678899999987 999999998853 57999999
Q ss_pred ec-CHHHHHHHHHHHHHHHHhhC
Q 012095 445 AA-SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 445 ~~-~~e~i~~~~~~l~~~l~~~~ 466 (471)
+. ++++|++++++|+++++++.
T Consensus 424 ~~~~~e~i~~~~~~L~~~l~~~~ 446 (448)
T 3aow_A 424 TYVDEDKIMEGIKRLAETIKEEL 446 (448)
T ss_dssp SSSCTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 98 78999999999999998753
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-53 Score=428.16 Aligned_cols=375 Identities=38% Similarity=0.664 Sum_probs=333.6
Q ss_pred cccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHH
Q 012095 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLK 146 (471)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~ 146 (471)
++++++..++++.+.++...+.+....|+++|+|+.|++++++|+.+.+++.+++.....+|++..|..++|+++++++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~ 92 (389)
T 1o4s_A 13 MVSRRISEIPISKTMELDAKAKALIKKGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIG 92 (389)
T ss_dssp -CCHHHHHSCCCSSHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhhcCccHHHHHHHHHHHHHhcCCCEEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHH
Confidence 36778888888888888888777766788999999999998888999999999887666789888899999999999999
Q ss_pred HHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc
Q 012095 147 EENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 226 (471)
Q Consensus 147 ~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~ 226 (471)
+.+|.++++++|++|+|+++++..++++++++||+|++++|+|+++...++..|++++.+|++.+++|.+|+++|+++++
T Consensus 93 ~~~g~~~~~~~v~~~~g~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~ 172 (389)
T 1o4s_A 93 ERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLV 172 (389)
T ss_dssp HHHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCC
T ss_pred HHhCCCCCHHHEEEecCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcc
Confidence 88898778899999999999999999999999999999999999999999999999999999765578899999999998
Q ss_pred cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCc
Q 012095 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (471)
Q Consensus 227 ~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~ 306 (471)
+++++|++++|+||||.+++.+++++|+++|++| |++||+||+|.++.+++ ...++..+....++++++.||||.+|+
T Consensus 173 ~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~Dea~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~~~ 250 (389)
T 1o4s_A 173 GKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKR-NFYIISDEVYDSLVYTD-EFTSILDVSEGFDRIVYINGFSKSHSM 250 (389)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTSBCSS-CCCCHHHHCSSSTTEEEEEESTTTTTC
T ss_pred cCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEEccccccccCC-CCCCHhhcCCCCCcEEEEeechhhcCC
Confidence 8899999999999999999999999999999999 99999999999988765 233455554335789999999999999
Q ss_pred cchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC
Q 012095 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (471)
Q Consensus 307 ~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p 386 (471)
+|+|+||+++++++++.+........++++.+.|.++.++|..+ ++++++.++++++++.+.|+++ |+++..|
T Consensus 251 ~G~r~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 323 (389)
T 1o4s_A 251 TGWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD------NSYMVQTFKERKNFVVERLKKM-GVKFVEP 323 (389)
T ss_dssp GGGCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC------CHHHHHHHHHHHHHHHHHHHHT-TCCCCCC
T ss_pred cccceEEEEeCHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHhc-CCeeecC
Confidence 99999999999999999988877667788999999999888752 6778889999999999999988 8888888
Q ss_pred CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012095 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLL 463 (471)
Q Consensus 387 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~ 463 (471)
.+++|+|++++ . +..++.++|++++||.+.||..|+.++++|++++.+++++++++++|.++++
T Consensus 324 ~~~~~~~~~~~-~------------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~~~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 324 EGAFYLFFKVR-G------------DDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFLN 387 (389)
T ss_dssp SBSSEEEEECS-S------------CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred CcceEEEEeCC-C------------CHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 99999999886 2 6788999988556999999999987889999999999999999999999875
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-53 Score=426.82 Aligned_cols=373 Identities=25% Similarity=0.436 Sum_probs=322.3
Q ss_pred ccccccccc--CCChHHHHHHHHHHHHhc--CCCeEEcCCCCCCCCChHHHHHHHHHHHHcC----CCCCCCCCCCHHHH
Q 012095 67 SLSPRVNAV--KPSKTVAITDQATALAQA--GVSVIRLAAGEPDFDTPVLIAEAGINAIREG----FTRYTPNAGTLELR 138 (471)
Q Consensus 67 ~~s~~~~~~--~~~~~~~~~~~~~~~~~~--g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~----~~~Y~~~~G~~~lr 138 (471)
.++++++.+ .++.++++...+..+... ++++|+|+.|+|++++|+.+.+++.+++.+. ..+|++..|..++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr 82 (398)
T 3ele_A 3 VVNESMYQLGSVRSAIRELFEYGKKRAAIVGKENVYDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETR 82 (398)
T ss_dssp SSCHHHHHHHHCCCHHHHHHHHHHHHHHHHCGGGCEECCSCCCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHH
T ss_pred chhHHHhccccCchhHHHHHHHHHHHHhhcCCCCeEEeecCCCCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHH
Confidence 467788887 678888887777665543 4679999999999999999999999988764 57898999999999
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCC-CeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCC
Q 012095 139 SAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPG-DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLD 217 (471)
Q Consensus 139 ~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~g-d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld 217 (471)
+++++++.+.+|+++++++|++|+|+++++..++++++++| |+|++++|+|.++...++..|++++.+|++. ++|.+|
T Consensus 83 ~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~~~~~d 161 (398)
T 3ele_A 83 AAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPADT-EHFQID 161 (398)
T ss_dssp HHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCT-TTSSCC
T ss_pred HHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCC-cCCcCC
Confidence 99999999999988899999999999999999999999999 9999999999999999999999999999975 468899
Q ss_pred HHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHh------CCCeEEEEccCCCccccCCCCccccccCCCCC
Q 012095 218 PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK------HPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 291 (471)
Q Consensus 218 ~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~------~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~ 291 (471)
+++|++++++++++|++++||||||.+++.+++++|+++|++ | +++||+||+|.++.+++...+.... ..
T Consensus 162 ~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~---~~ 237 (398)
T 3ele_A 162 FDALEERINAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGR-PIFIIADEPYREIVYDGIKVPFVTK---YY 237 (398)
T ss_dssp HHHHHHTCCTTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTS-CCEEEEECTTTTCBCTTCCCCCGGG---TC
T ss_pred HHHHHHHhCcCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCC-CeEEEEeccccccccCCCCcCChHh---hc
Confidence 999999999899999999999999999999999999999999 9 9999999999999887643333322 25
Q ss_pred CceEEEecCCcccCccchhheeeEcCHHH------HHHHHHHHhc-ccCCCChHHHHHHHHHHhccCCChHHHHHHHHHH
Q 012095 292 ERTLTVNGFSKAFAMTGWRLGYIAGPKHF------VAACNKIQSQ-FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364 (471)
Q Consensus 292 ~~~i~~~S~SK~~g~~G~R~G~v~~~~~~------i~~l~~~~~~-~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~ 364 (471)
+++++++||||.+|++|+|+||+++++++ .+.+...... ...+++.+.|.++..+++.. . .++.+
T Consensus 238 ~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~-----~~~~~ 309 (398)
T 3ele_A 238 DNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGAT---G-----DINAY 309 (398)
T ss_dssp SSEEEEEESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCC---C-----CHHHH
T ss_pred CCeEEEEehhhcCCCccceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCH---H-----HHHHH
Confidence 78999999999999999999999998874 3444443333 25567889998888777652 1 35778
Q ss_pred HHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe
Q 012095 365 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY 444 (471)
Q Consensus 365 ~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~ 444 (471)
+++++++.+.|+++ |+.+..|.+++|+|++++.. +..++++.|. ++||.+.||..|+.++++||++
T Consensus 310 ~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~-~~gi~v~~g~~~~~~~~iRis~ 375 (398)
T 3ele_A 310 KENRDLLYEGLTRI-GYHCFKPDGAFYMFVKALED------------DSNAFCEKAK-EEDVLIVAADGFGCPGWVRISY 375 (398)
T ss_dssp HHHHHHHHHHHHHH-TCCEECCSBSSEEEEECSSS------------CHHHHHHHHH-TTTEECEESGGGTCTTEEEEEC
T ss_pred HHHHHHHHHHHHHc-CCeecCCCeeEEEEEEcCCC------------CHHHHHHHHH-HCCEEEeCccccCCCCeEEEEe
Confidence 88999999999888 89999999999999998753 6788888765 4599999999999889999999
Q ss_pred ecCHHHHHHHHHHHHHHHHhhC
Q 012095 445 AASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 445 ~~~~e~i~~~~~~l~~~l~~~~ 466 (471)
+.+++++++++++|++++++++
T Consensus 376 ~~~~e~i~~~l~~l~~~l~~~~ 397 (398)
T 3ele_A 376 CVDREMIKHSMPAFEKIYKKYN 397 (398)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHHHHhh
Confidence 9899999999999999998875
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-53 Score=428.97 Aligned_cols=373 Identities=22% Similarity=0.365 Sum_probs=325.9
Q ss_pred cccccccCCChHHHHHHHHHHHH-hcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHH
Q 012095 69 SPRVNAVKPSKTVAITDQATALA-QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (471)
Q Consensus 69 s~~~~~~~~~~~~~~~~~~~~~~-~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~ 147 (471)
+++++.++++++..+......+. ..|+++|+|+.|++++++|+.+.+++.+++. ...+|++..|..++|+++++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~-~~~~y~~~~g~~~lr~~la~~l~~ 81 (396)
T 3jtx_A 3 NTLLKQLKPYPFARLHEAMQGISAPEGMEAVPLHIGEPKHPTPKVITDALTASLH-ELEKYPLTAGLPELRQACANWLKR 81 (396)
T ss_dssp HHHHHHCCSCHHHHHHHHTTTCCCCTTCCCEECSCCSCCSCCCHHHHHHHHHTGG-GGGSCCCTTCCHHHHHHHHHHHHH
T ss_pred hhhhccCCCChHHHHHHHHHhhhhccCCCeEEeCCcCCCCCCCHHHHHHHHHHhh-hccCCCCCCCcHHHHHHHHHHHHH
Confidence 45667778887777665544433 3578999999999999999999999998775 467898888999999999999999
Q ss_pred HhCCC-CCCC-cEEEeCChHHHHHHHHHHhcCCC-----CeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHH
Q 012095 148 ENGLS-YTPD-QILVSNGAKQSILQAVLAVCSPG-----DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKV 220 (471)
Q Consensus 148 ~~g~~-~~~~-~i~it~G~~~al~~~~~~l~~~g-----d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~ 220 (471)
.+|.+ ++++ +|++|+|+++++..++++++++| |+|+++.|+|.++...++..|++++.++++ +++|.+|+++
T Consensus 82 ~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~g~~~d~~~ 160 (396)
T 3jtx_A 82 RYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCP-APSFNPDWRS 160 (396)
T ss_dssp HTTTCCCCTTTSEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEECC-TTTCCCCGGG
T ss_pred hcCCCCCCCCCeEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeecC-CCCCccCHHH
Confidence 99987 7788 99999999999999999999997 799999999999999999999999999994 5678899999
Q ss_pred HHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCcccccc----CCCCCCceEE
Q 012095 221 LESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS----LPGMWERTLT 296 (471)
Q Consensus 221 l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~----~~~~~~~~i~ 296 (471)
+++++++++++|++++||||||.+++.+++++|+++|++| +++||+||+|.++.+++....+... +....+++++
T Consensus 161 l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 239 (396)
T 3jtx_A 161 ISEEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKY-GFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLM 239 (396)
T ss_dssp SCHHHHHTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-CCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEE
T ss_pred HHHhhccCcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHc-CCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEE
Confidence 9999988999999999999999999999999999999999 9999999999999887632222221 2223588999
Q ss_pred EecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhc
Q 012095 297 VNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 376 (471)
Q Consensus 297 ~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~ 376 (471)
+.||||.++++|+|+||+++++++++.+.......+++++.+.|.++.++|.. .+++.+.++.++++++.+.+.|.
T Consensus 240 ~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~ 315 (396)
T 3jtx_A 240 FTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWDD----EQHVIDNRRLYQEKFERVIPILQ 315 (396)
T ss_dssp EEESTTTSSCGGGCCEEEEECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EeccccccCCcccceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887777788999999999999985 68899999999999999999998
Q ss_pred CCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--------CCcEEEEeecCH
Q 012095 377 ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--------DTCIRISYAASL 448 (471)
Q Consensus 377 ~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--------~~~iRis~~~~~ 448 (471)
++ +.+..|.+++|+|++++.. +..++++.|++++||.+.||+.|+. ++++||+++.++
T Consensus 316 ~~--~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~~~ 381 (396)
T 3jtx_A 316 QV--FDVKLPDASFYIWLKVPDG------------DDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADV 381 (396)
T ss_dssp TT--SCCCCCSSSSEEEEECTTS------------CHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCSCH
T ss_pred hc--CCccCCCeeEEEEEECCCC------------CHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcCCH
Confidence 86 4566789999999999752 6789999998777999999998875 479999999999
Q ss_pred HHHHHHHHHHHHHH
Q 012095 449 TTLQAAVERIKKGL 462 (471)
Q Consensus 449 e~i~~~~~~l~~~l 462 (471)
+++++++++|++++
T Consensus 382 ~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 382 ATCVKAAEDIVSLY 395 (396)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999875
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-53 Score=432.84 Aligned_cols=391 Identities=23% Similarity=0.369 Sum_probs=324.3
Q ss_pred cccccccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCC----CCChHHHHHHHHHHHHcC-CCCCCCCCCCHHH
Q 012095 63 QVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPD----FDTPVLIAEAGINAIREG-FTRYTPNAGTLEL 137 (471)
Q Consensus 63 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~----~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~l 137 (471)
+|.+.++.. ....+.+++.+.+........++++|+|+.|+|+ +++++.+.+++.+++... ..+|++..|..++
T Consensus 23 ~w~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l 101 (427)
T 3dyd_A 23 MWSVRPSDM-AKKTFNPIRAIVDNMKVKPNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSS 101 (427)
T ss_dssp -CCCCCCC-----------------CCCCCTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHH
T ss_pred ccCcchhhH-hhcccchHHHHHHHHhhcccCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcHHH
Confidence 566555543 3333445555554433322356789999999975 577899999999988764 4689899999999
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCC
Q 012095 138 RSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLD 217 (471)
Q Consensus 138 r~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld 217 (471)
|+++++++... |.++++++|++|+|+++++..+++.++++||+|++++|+|.+|...++..|++++.++++++++|.+|
T Consensus 102 r~~la~~~~~~-~~~~~~~~v~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d 180 (427)
T 3dyd_A 102 REEIASYYHCP-EAPLEAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEID 180 (427)
T ss_dssp HHHHHHHHCBT-TBCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEEC
T ss_pred HHHHHHHHhhc-CCCCChHHEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCC
Confidence 99999999765 77778899999999999999999999999999999999999999999999999999999877788999
Q ss_pred HHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEE
Q 012095 218 PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTV 297 (471)
Q Consensus 218 ~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~ 297 (471)
++++++++++++++|++++||||||.+++.+++++|+++|++| ++++|+||+|.++.+++....++..+.. ..+++++
T Consensus 181 ~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~-~~~~i~Deay~~~~~~g~~~~~~~~~~~-~~~vi~~ 258 (427)
T 3dyd_A 181 LKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQ-CVPILADEIYGDMVFSDCKYEPLATLST-DVPILSC 258 (427)
T ss_dssp HHHHHSSCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCCEEEECTTTTCBCSSCCCCCGGGGCS-SCCEEEE
T ss_pred HHHHHHHhccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEcCchhhccCCCcCccHHHhCC-CCcEEEE
Confidence 9999999988899999999999999999999999999999999 9999999999999987765555555543 4678999
Q ss_pred ecCCcccCccchhheeeEcC-------HHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Q 012095 298 NGFSKAFAMTGWRLGYIAGP-------KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 370 (471)
Q Consensus 298 ~S~SK~~g~~G~R~G~v~~~-------~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~ 370 (471)
+||||.|+++|+|+||++++ +++++.+...... .+++++++|.++.++|+.. ..+++++++++++++++.
T Consensus 259 ~S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~a~~~~L~~~--~~~~~~~~~~~~~~~~~~ 335 (427)
T 3dyd_A 259 GGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQR-ILGPCTIVQGALKSILCRT--PGEFYHNTLSFLKSNADL 335 (427)
T ss_dssp EESTTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH-HCCSCHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHH
T ss_pred eeccccCCCcCcceEEEEecCcchhhHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 5788888776543 4679999999999999842 368899999999999999
Q ss_pred HHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHH
Q 012095 371 LVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTT 450 (471)
Q Consensus 371 l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~ 450 (471)
+.+.|+++||+.+..|++++|+|++++... .....+..+++++|++++||.+.||..|+.++++||+++.++++
T Consensus 336 l~~~L~~~~g~~~~~p~~g~~~~~~l~~~~------~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~~~~~e~ 409 (427)
T 3dyd_A 336 CYGALAAIPGLRPVRPSGAMYLMVGIEMEH------FPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVITVPEVM 409 (427)
T ss_dssp HHHHHHHSTTEEEECCSBTTEEEEEECGGG------CTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEESCSCHHH
T ss_pred HHHHHhcCCCceecCCCeeEEEEEecCHhh------cCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEECCCHHH
Confidence 999999998999888999999999886310 00012678899999866799999999999899999999999999
Q ss_pred HHHHHHHHHHHHHhhC
Q 012095 451 LQAAVERIKKGLLTLR 466 (471)
Q Consensus 451 i~~~~~~l~~~l~~~~ 466 (471)
+++++++|.+++++++
T Consensus 410 i~~~l~~l~~~l~~~~ 425 (427)
T 3dyd_A 410 MLEACSRIQEFCEQHY 425 (427)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998875
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-53 Score=428.52 Aligned_cols=383 Identities=31% Similarity=0.522 Sum_probs=330.7
Q ss_pred ccccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCC---CCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHH
Q 012095 66 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP---DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAIC 142 (471)
Q Consensus 66 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~---~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia 142 (471)
+.++++++.++++.+..+. .+.++...|+++|+|+.|.+ ++++|+.+.+++.+++......|++..|..++|++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la 88 (406)
T 1xi9_A 10 IRASKRALSVEYAIRDVVL-PARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIV 88 (406)
T ss_dssp CCCCHHHHTCCC--------CHHHHHHTTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHH
T ss_pred hhHHHHHhcCChhHHHHHH-HHHHHHHcCCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHH
Confidence 3467788888888787777 77777778889999999999 7888899999999988766668988889999999999
Q ss_pred HHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHH
Q 012095 143 HKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLE 222 (471)
Q Consensus 143 ~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~ 222 (471)
+++.+.+|+++++++|++|+|+++++..++++++++||+|++++|+|+++...++..|++++.++++.+++|.+|+++|+
T Consensus 89 ~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~ 168 (406)
T 1xi9_A 89 EREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIR 168 (406)
T ss_dssp HHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHH
T ss_pred HHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHH
Confidence 99999999888899999999999999999999999999999999999999999999999999999876457889999999
Q ss_pred hhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCc-eEEEecCC
Q 012095 223 SKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER-TLTVNGFS 301 (471)
Q Consensus 223 ~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~-~i~~~S~S 301 (471)
+++++++++|++++|+||||.+++.+++++|+++|++| |++||+||+|.++.+++ ...++..++ .++ +++++|||
T Consensus 169 ~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~-~~~li~De~~~~~~~~~-~~~~~~~~~--~~~~~i~~~s~s 244 (406)
T 1xi9_A 169 KKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEY-EIPVISDEIYDLMTYEG-EHISPGSLT--KDVPVIVMNGLS 244 (406)
T ss_dssp HHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCCEEEECTTTTCBSSS-CCCCHHHHC--SSSCEEEEEEST
T ss_pred HhhCcCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHc-CCEEEEEcCccccccCC-CCCCHHHcC--CCceEEEEeccc
Confidence 99988899999999999999999999999999999999 99999999999988743 233454553 477 89999999
Q ss_pred cccCccchhheeeE--cCH----HHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHh
Q 012095 302 KAFAMTGWRLGYIA--GPK----HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF 375 (471)
Q Consensus 302 K~~g~~G~R~G~v~--~~~----~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L 375 (471)
|.+|++|+|+||++ +++ ++++.+....... ++++.+.|.++.++|+. ..++++++++.++++++++.+.|
T Consensus 245 K~~~~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L 320 (406)
T 1xi9_A 245 KVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTG---PMDYLKEYMKKLKERRDYIYKRL 320 (406)
T ss_dssp TTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHS---CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCccEEEEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 999 9999998876655 67899999999999975 35668899999999999999999
Q ss_pred cCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHH
Q 012095 376 GELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQA 453 (471)
Q Consensus 376 ~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~ 453 (471)
++++|+.+..|.+++|+|++++...+ .+..++++.|++++||.+.||..|+. ++++||+++.+++++++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~~~~~~i~~ 391 (406)
T 1xi9_A 321 NEIPGISTTKPQGAFYIFPKIEVGPW---------KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEE 391 (406)
T ss_dssp HTSTTEECCCCCBSSEECCEECSCSC---------SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHH
T ss_pred HhCCCCeeecCCeeEEEEEecCccCC---------CCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEecCCHHHHHH
Confidence 99889988889999999988874100 16788999988556999999998875 68999999999999999
Q ss_pred HHHHHHHHHHhhC
Q 012095 454 AVERIKKGLLTLR 466 (471)
Q Consensus 454 ~~~~l~~~l~~~~ 466 (471)
++++|+++++++.
T Consensus 392 ~~~~l~~~l~~~~ 404 (406)
T 1xi9_A 392 AMDRFEKFMKERL 404 (406)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998754
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-53 Score=430.20 Aligned_cols=377 Identities=23% Similarity=0.370 Sum_probs=323.1
Q ss_pred cccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHH
Q 012095 69 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKE 147 (471)
Q Consensus 69 s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~ 147 (471)
++++..++++.+..+...... ..|+++|+|+.|++++++++.+.+++.+++.+. ..+|++..|..++|+++++++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~--~~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~ 100 (404)
T 2o1b_A 23 SNKLANIPDSYFGKTMGRKIE--HGPLPLINMAVGIPDGPTPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQR 100 (404)
T ss_dssp CHHHHTSCCCTTC-------C--CCSSCCEECCCCSCSSCCCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHH
T ss_pred hhHhhhCCchHHHHHHHHHHh--cCCCCEEecCCcCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 445555665555444333221 356779999999999888899999999887432 35787778999999999999999
Q ss_pred HhCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc
Q 012095 148 ENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 226 (471)
Q Consensus 148 ~~g~~~~~-~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~ 226 (471)
.+|.++++ ++|++|+|+++++..++++++++||+|++++|+|.++...++..|++++.++++. ++|.+|+++|+++++
T Consensus 101 ~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~ 179 (404)
T 2o1b_A 101 QYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEP-PHYLPDWSKVDSQII 179 (404)
T ss_dssp HHCCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHHHHTTCEEEEEECCT-TTCCCCGGGSCHHHH
T ss_pred HhCCCCCCcccEEEcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCc-ccCcCCHHHHHHhhc
Confidence 88987776 7999999999999999999999999999999999999999999999999999875 567789999999998
Q ss_pred cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCc
Q 012095 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (471)
Q Consensus 227 ~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~ 306 (471)
+++++|++++|+||||.+++.+++++|+++|++| +++||+||+|.++.+++ ...++..+....++++++.||||.+|+
T Consensus 180 ~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~g~ 257 (404)
T 2o1b_A 180 DKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGT-DTKIVHDFAYGAFGFDA-KNPSILASENGKDVAIEIYSLSKGYNM 257 (404)
T ss_dssp HHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTS-SCEEEEECTTTTCBSSS-CCCCGGGSTTHHHHEEEEEESTTTTTC
T ss_pred cCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHc-CCEEEEEccchhcccCC-CCCChhhcCCCCCCEEEEEecchhccC
Confidence 8899999999999999999999999999999999 99999999999988865 334455554334789999999999999
Q ss_pred cchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC
Q 012095 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (471)
Q Consensus 307 ~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p 386 (471)
+|+|+||+++++++++.+......+.++++.+.|.++.++|+. ..++++++++.++++++++.+.|+++ |+.+..|
T Consensus 258 ~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 333 (404)
T 2o1b_A 258 SGFRVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNH---YDDFLEEQSNVFKTRRDRFEAMLAKA-DLPFVHA 333 (404)
T ss_dssp GGGCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEECC
T ss_pred chhheEeEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHhc-CCeecCC
Confidence 9999999999999999998887777778999999999999986 37889999999999999999999988 8988889
Q ss_pred CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012095 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 387 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~l~~ 464 (471)
++|+|+|++++.. .+..+++++|++++||.+.||..|+. ++++||+++.+++++++++++|++++++
T Consensus 334 ~~g~~~~~~~~~~-----------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 334 KGGIYVWLETPPG-----------YDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp CBSSEEEEECCTT-----------CCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCSCTTHHHHHHHHHHGGGGG
T ss_pred CcceEEEEeCCCC-----------CCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 9999999999743 16788999988666999999998874 6899999999889999999999998875
Q ss_pred h
Q 012095 465 L 465 (471)
Q Consensus 465 ~ 465 (471)
+
T Consensus 403 ~ 403 (404)
T 2o1b_A 403 Y 403 (404)
T ss_dssp G
T ss_pred h
Confidence 4
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-52 Score=421.09 Aligned_cols=367 Identities=25% Similarity=0.403 Sum_probs=321.2
Q ss_pred cCC-ChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHHHhCCC
Q 012095 75 VKP-SKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLS 152 (471)
Q Consensus 75 ~~~-~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~g~~ 152 (471)
+++ +.+..+..........|+++|+|+.|++++++|+.+.+++.+++.++ ..+|++..|..++|+++++++.+.+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~ 83 (376)
T 2dou_A 4 VPEPSVFLVVDEAKRKARERGVGLIDLSIGSTDLPPPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVG 83 (376)
T ss_dssp CCCTHHHHHHHHHHHHHHHTTCCCEECSSCCCCCCCCHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCccchHHHHHHHHHHhhccCCCEEeccCCCCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 344 55666666666665678899999999999888899999999887543 5678665788999999999999988987
Q ss_pred CCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcE
Q 012095 153 YTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRL 231 (471)
Q Consensus 153 ~~~~-~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~ 231 (471)
++++ +|++|+|+++++..++++++++||+|++++|+|+++...++..|++++.+|+ +++|.+|++++++++++++++
T Consensus 84 ~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~l~~~~~~ 161 (376)
T 2dou_A 84 LDPRREALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPL--REDGLADLKAVPEGVWREAKV 161 (376)
T ss_dssp CCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHTTCEEEEECB--CTTSSBCGGGSCHHHHHHEEE
T ss_pred CCCCccEEEcCCcHHHHHHHHHHhcCCCCEEEECCCCcHhHHHHHHHcCCEEEEeeC--CCCCCCCHHHHHHhhccCceE
Confidence 7777 9999999999999999999999999999999999999999999999999998 466789999999999888999
Q ss_pred EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhh
Q 012095 232 LILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRL 311 (471)
Q Consensus 232 i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~ 311 (471)
|++++||||||.+++.+++++|+++|++| +++||+||+|.++.+++. ..++..+....+++++++||||.+|++|+|+
T Consensus 162 v~l~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 239 (376)
T 2dou_A 162 LLLNYPNNPTGAVADWGYFEEALGLARKH-GLWLIHDNPYVDQVYEGE-APSPLALPGAKERVVELFSLSKSYNLAGFRL 239 (376)
T ss_dssp EEECSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTGGGBSSSC-CCCGGGSTTGGGTEEEEEEHHHHHTCGGGCC
T ss_pred EEECCCCCCcCccCCHHHHHHHHHHHHHc-CCEEEEEccchhcccCCC-CCChhhcCCCCCcEEEEecchhhcCChhhee
Confidence 99999999999999999999999999999 999999999999887652 3344444333578999999999999999999
Q ss_pred eeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceE
Q 012095 312 GYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY 391 (471)
Q Consensus 312 G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~ 391 (471)
||+++++++++.+......++++++.+.|.++.++|+. ..+++++.++.++++++++.+.|+++ +.+..|.+|+|
T Consensus 240 G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~ 314 (376)
T 2dou_A 240 GFALGSEEALARLERVKGVIDFNQYAGVLRMGVEALKT---PKEVVRGYARVYRERALGMAEALKGV--LSLLPPRATMY 314 (376)
T ss_dssp EEEEECHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTS---CHHHHHHHHHHHHHHHHHHHHHHTTT--SEECCCCBSSE
T ss_pred EEEecCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHh--cCccCCCeeEE
Confidence 99999999999999887777778899999999999985 37889999999999999999999987 78878889999
Q ss_pred EeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHH
Q 012095 392 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGL 462 (471)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~l 462 (471)
+|+++++. .+..++.++|+++ ||.+.||..|+. ++++|++++.+++++++++++|++++
T Consensus 315 ~~~~~~~~-----------~~~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~Ris~~~~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 315 LWGRLPEG-----------VDDLEFGLRLVER-GVALAPGRGFGPGGKGFVRIALVRPLEELLEAAKRIREAL 375 (376)
T ss_dssp EEEECCTT-----------CCHHHHHHHHHHT-TEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHTC
T ss_pred EEEECCCC-----------CCHHHHHHHHHHC-CEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence 99999753 1678899999887 999999998874 58999999999999999999998764
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-52 Score=417.48 Aligned_cols=373 Identities=28% Similarity=0.482 Sum_probs=323.8
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~ 147 (471)
+++++..+.++.+..+..... ..++|+|+.|.+++++|+.+.+++.+++..+..+|++..|..++|+++++++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~-----~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~ 82 (386)
T 1u08_A 8 PQSKLPQLGTTIFTQMSALAQ-----QHQAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTER 82 (386)
T ss_dssp CCCSCCCCCCCHHHHHHHHHH-----HTTCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHH
T ss_pred cchhhhcCCccHHHHHHHHHh-----cCCeEEecCCCCCCCCCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHH
Confidence 356677777766555433322 145899999999988889999999999876667898888999999999999999
Q ss_pred HhCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc
Q 012095 148 ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 226 (471)
Q Consensus 148 ~~g~~~~~~-~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~ 226 (471)
.+|.+++++ +|++|+|+++++..++++++++||.|++++|+|+++...++..|++++.++++.+ +|.+|+++|+++++
T Consensus 83 ~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l~~~l~ 161 (386)
T 1u08_A 83 LYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPP-HFRVDWQEFAALLS 161 (386)
T ss_dssp HHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTT-TCCCCHHHHHHHCC
T ss_pred HhCCCCCCCCCEEEcCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeecCcc-cCcCCHHHHHHhhc
Confidence 899888888 9999999999999999999999999999999999999999999999999998753 57799999999998
Q ss_pred cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCc
Q 012095 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (471)
Q Consensus 227 ~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~ 306 (471)
+++++|++++|+||||.++|.+++++|+++|++| +++||+||+|.++.+++....++..+....++++++.||||.+|+
T Consensus 162 ~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 240 (386)
T 1u08_A 162 ERTRLVILNTPHNPSATVWQQADFAALWQAIAGH-EIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHM 240 (386)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTS-CCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTC
T ss_pred ccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHc-CcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCC
Confidence 8899999999999999999999999999999999 999999999999988765445555543235789999999999999
Q ss_pred cchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC
Q 012095 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (471)
Q Consensus 307 ~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p 386 (471)
+|+|+||+++++++++.+........++++.+.|.++.++|+. ..++++++++.++++++++.+.|+++ |+++..|
T Consensus 241 ~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 316 (386)
T 1u08_A 241 TGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRA---EPEHYLALPDFYRQKRDILVNALNES-RLEILPC 316 (386)
T ss_dssp GGGCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH---CTHHHHTHHHHHHHHHHHHHHHTTSS-SCEECCC
T ss_pred cccceEEEEcCHHHHHHHHHHHHhhccCCChHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCC
Confidence 9999999999999999998877666777899999999999986 36789999999999999999999998 8998888
Q ss_pred CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC----CCCcEEEEeecCHHHHHHHHHHHHH
Q 012095 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG----DDTCIRISYAASLTTLQAAVERIKK 460 (471)
Q Consensus 387 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~----~~~~iRis~~~~~e~i~~~~~~l~~ 460 (471)
++|+|+|++++... ..+..+++++|++++||.+.||..|+ .++++||+++.++++|++++++|++
T Consensus 317 ~~g~~~~~~~~~~~---------~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 317 EGTYFLLVDYSAVS---------TLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQ 385 (386)
T ss_dssp CBSSEEEEECTTTC---------CSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred CceEEEEEecCCCC---------CCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcCCHHHHHHHHHHHhh
Confidence 99999999987520 01578899988876799999998885 3579999999999999999999864
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-52 Score=425.79 Aligned_cols=382 Identities=31% Similarity=0.519 Sum_probs=328.7
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~ 147 (471)
+++++..++++.+..+...+. ..++|+|+.|.+++++|+.+.+++.+++.++...|++..|..+||+++++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-----~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~ 77 (411)
T 2o0r_A 3 TVSRLRPYATTVFAEMSALAT-----RIGAVNLGQGFPDEDGPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRR 77 (411)
T ss_dssp CCGGGGGGSSCHHHHHHHHHH-----TTTCEESSCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHH
T ss_pred hhhHhHhcCccHHHHHHHHhh-----cCCeeeccCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 567788888876655443322 245899999999988889999999999876667898888999999999999999
Q ss_pred HhCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCC-CCCcCCHHHHHhhh
Q 012095 148 ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS-ENFLLDPKVLESKL 225 (471)
Q Consensus 148 ~~g~~~~~~-~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~ld~e~l~~~l 225 (471)
.+|.+++++ +|++|+|+++++..++++++++||+|++++|+|+++...++..|++++.++++.+ ++|.+|+++|++++
T Consensus 78 ~~g~~~~~~~~v~~t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l 157 (411)
T 2o0r_A 78 HFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAV 157 (411)
T ss_dssp HHCCCCCTTTSEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHC
T ss_pred HcCCCCCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhh
Confidence 999878888 9999999999999999999999999999999999999999999999999998754 35779999999999
Q ss_pred ccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccC
Q 012095 226 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305 (471)
Q Consensus 226 ~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 305 (471)
++++++|++++|+||||.+++.+++++|+++|++| |++||+||+|.++.+++....++..++...++++++.||||.+|
T Consensus 158 ~~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~ 236 (411)
T 2o0r_A 158 TPRTRALIINSPHNPTGAVLSATELAAIAEIAVAA-NLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFN 236 (411)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTT
T ss_pred ccCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcC
Confidence 88899999999999999999999999999999999 99999999999998876555556555444578999999999999
Q ss_pred ccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC
Q 012095 306 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385 (471)
Q Consensus 306 ~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~ 385 (471)
++|+|+||+++++++++.+........++.+++.|.++.++|+. ..++++++++.++++++++.+.|+++ |+.+..
T Consensus 237 ~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 312 (411)
T 2o0r_A 237 CTGWKIGWACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDT---EDAWVAALRNSLRARRDRLAAGLTEI-GFAVHD 312 (411)
T ss_dssp CTTTCEEEEECCHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHH-TCEECC
T ss_pred CccceEEEEeeCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHHc-CCEecC
Confidence 99999999999999999998877666677888999999999986 37889999999999999999999988 899888
Q ss_pred CCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC-------------CCCcEEEEeecCHHHHH
Q 012095 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-------------DDTCIRISYAASLTTLQ 452 (471)
Q Consensus 386 p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~-------------~~~~iRis~~~~~e~i~ 452 (471)
|++|+|+|++++... ..+..+++++|++++||.+.||..|. .++++||+++.++++++
T Consensus 313 ~~~g~~~~~~~~~~~---------~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~ 383 (411)
T 2o0r_A 313 SYGTYFLCADPRPLG---------YDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLD 383 (411)
T ss_dssp CCBSSEEEEECGGGT---------CCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCSCHHHHH
T ss_pred CCeeEEEEEecCCCC---------CCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecCCHHHHH
Confidence 999999999997520 01578899988866699999998883 24689999998999999
Q ss_pred HHHHHHHHHHHhhCCC
Q 012095 453 AAVERIKKGLLTLRPG 468 (471)
Q Consensus 453 ~~~~~l~~~l~~~~~~ 468 (471)
+++++|++++++.+.+
T Consensus 384 ~~~~~l~~~~~~~~~~ 399 (411)
T 2o0r_A 384 EAIRRLSVLAERPATG 399 (411)
T ss_dssp HHHHHHGGGGC-----
T ss_pred HHHHHHHHHHhccCcC
Confidence 9999999988766544
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-52 Score=423.29 Aligned_cols=383 Identities=31% Similarity=0.520 Sum_probs=328.5
Q ss_pred ccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHHH
Q 012095 70 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEE 148 (471)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~ 148 (471)
.++..++++.+..+.+. ..+.++|+|+.|+|++++|+.+.+++.+++.+. ..+|++..|..++|+++++++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~ 77 (410)
T 3e2y_A 3 KRIEGLDSNVWVEFTKL-----AADPSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKI 77 (410)
T ss_dssp GGGTTCCCCHHHHTTTT-----TTSTTSEECSSCCCCSCCCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHH
T ss_pred hhhccCCccHHHHHHHH-----hcCCCeEEecCCCCCCCCCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHH
Confidence 45666677766554332 235679999999999999999999999988653 458988889999999999999999
Q ss_pred hCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCC---------CCCCcCCH
Q 012095 149 NGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI---------SENFLLDP 218 (471)
Q Consensus 149 ~g~~~~~-~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~---------~~~~~ld~ 218 (471)
+|.++++ ++|++|+|+++++..++++++++||.|+++.|+|..+...++..|++++.++++. +.+|.+|+
T Consensus 78 ~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~ 157 (410)
T 3e2y_A 78 YQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDP 157 (410)
T ss_dssp HTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCH
T ss_pred hCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCCH
Confidence 9998888 8999999999999999999999999999999999999999999999999999873 24577899
Q ss_pred HHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEe
Q 012095 219 KVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVN 298 (471)
Q Consensus 219 e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~ 298 (471)
+++++++++++++|++++||||||.+++.+++++|+++|++| +++||+||+|.++.+++....++..+....++++++.
T Consensus 158 ~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 236 (410)
T 3e2y_A 158 RELESKFSSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKH-DTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIG 236 (410)
T ss_dssp HHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEE
T ss_pred HHHHhhcCCCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHc-CcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEe
Confidence 999999988999999999999999999999999999999999 9999999999999988766667777766678999999
Q ss_pred cCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhc-----cCCChHHHHHHHHHHHHHHHHHHH
Q 012095 299 GFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL-----GYAGGEVVSKMVKAFRERRDFLVK 373 (471)
Q Consensus 299 S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~-----~~~~~~~~~~~~~~~~~~r~~l~~ 373 (471)
||||.+|++|+|+||+++++++++.+........++++++.|.++.++|.. .. ...+++++++.++++++++.+
T Consensus 237 S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 315 (410)
T 3e2y_A 237 SAGKTFSVTGWKLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDD-PECYFNSLPKELEVKRDRMVR 315 (410)
T ss_dssp EHHHHSSCGGGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTS-TTSHHHHHHHHHHHHHHHHHH
T ss_pred cchhhcCCCCceEEEEEECHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccc-hHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887777788999999999999873 11 267899999999999999999
Q ss_pred HhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------CCcEEEEeec
Q 012095 374 SFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------DTCIRISYAA 446 (471)
Q Consensus 374 ~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~-------~~~iRis~~~ 446 (471)
.|+++ |+.+..|++++|+|++++..............+..+++++|++++||.+.||+.|+. ++++||+++.
T Consensus 316 ~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~ 394 (410)
T 3e2y_A 316 LLNSV-GLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIK 394 (410)
T ss_dssp HHHTT-TCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCC
T ss_pred HHHHC-CCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcC
Confidence 99998 999889999999999986531100000000012458888888778999999999864 4799999999
Q ss_pred CHHHHHHHHHHHHH
Q 012095 447 SLTTLQAAVERIKK 460 (471)
Q Consensus 447 ~~e~i~~~~~~l~~ 460 (471)
++++|++++++|++
T Consensus 395 ~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 395 KDSTLDAAEEIFRA 408 (410)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999875
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-52 Score=424.43 Aligned_cols=390 Identities=25% Similarity=0.442 Sum_probs=329.7
Q ss_pred ccccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHc---CCCCCCCCCCCHHHHHHHH
Q 012095 66 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE---GFTRYTPNAGTLELRSAIC 142 (471)
Q Consensus 66 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~---~~~~Y~~~~G~~~lr~~ia 142 (471)
+.+++++....++.+..+.+... ..++|+|+.|.+++++|+.+.+++.+++.. ...+|++..|..+++++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la 87 (429)
T 1yiz_A 13 FDLPKRYQGSTKSVWVEYIQLAA-----QYKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALS 87 (429)
T ss_dssp CCSSSSCCCCTTCHHHHHHHHHH-----HHCCEECCSSSCSSCCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHH
T ss_pred cchhHHhhhCCchHHHHHHHHhc-----cCCEEEecCCCCCCCCCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHH
Confidence 33567777777766554433322 235899999999988899999999998865 3568988889999999999
Q ss_pred HHHHHHhCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCC--------C
Q 012095 143 HKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE--------N 213 (471)
Q Consensus 143 ~~~~~~~g~~~~~~-~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~--------~ 213 (471)
+++.+.+|.+++++ +|++|+|+++++..++++++++||+|++++|+|+++...++..|++++.+|++.++ +
T Consensus 88 ~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 167 (429)
T 1yiz_A 88 KLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSAD 167 (429)
T ss_dssp HHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGG
T ss_pred HHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccC
Confidence 99999889877888 99999999999999999999999999999999999999999999999999987653 5
Q ss_pred CcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCc
Q 012095 214 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 293 (471)
Q Consensus 214 ~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~ 293 (471)
|.+|++.|++++++++++|++++|+||||.+++.+++++|+++|++| |++||+||+|.++.+++....++..++...++
T Consensus 168 ~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 246 (429)
T 1yiz_A 168 WVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKW-NVLCVSDEVYEHMVFEPFEHIRICTLPGMWER 246 (429)
T ss_dssp CBCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTSCCCCGGGSTTTGGG
T ss_pred cccCHHHHHHHhccCceEEEECCCCCCCCccCCHHHHHHHHHHHHHc-CcEEEEeccccccccCCCCCcChhhccCCcCc
Confidence 78999999999988899999999999999999999999999999999 99999999999998876555566555434678
Q ss_pred eEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhc-----cCCChHHHHHHHHHHHHHH
Q 012095 294 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL-----GYAGGEVVSKMVKAFRERR 368 (471)
Q Consensus 294 ~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~-----~~~~~~~~~~~~~~~~~~r 368 (471)
++++.||||.+|++|+|+||+++++++++.+.......+++.+++.|.++.++|+. +.. .++++++++.+++++
T Consensus 247 ~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~ 325 (429)
T 1yiz_A 247 TITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSP-ECYFNSISGELMAKR 325 (429)
T ss_dssp EEEEEEHHHHHTCGGGCCEEEESCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTST-TSHHHHHHHHHHHHH
T ss_pred eEEEecchhccCCCCcceEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccch-HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998877767778999999999999986 432 678999999999999
Q ss_pred HHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCc-ccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------CCcE
Q 012095 369 DFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSE-AEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------DTCI 440 (471)
Q Consensus 369 ~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~-------~~~i 440 (471)
+++.+.|.++ |+.+..|.+|+|+|++++...... ........+..+++++|++++||.+.||..|+. ++++
T Consensus 326 ~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~i 404 (429)
T 1yiz_A 326 DYMASFLAEV-GMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFV 404 (429)
T ss_dssp HHHHHHHHHH-TCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEE
T ss_pred HHHHHHHHhC-CCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeE
Confidence 9999999988 898888889999999997530000 000000014678898888667999999988863 5799
Q ss_pred EEEeecCHHHHHHHHHHHHHHHH
Q 012095 441 RISYAASLTTLQAAVERIKKGLL 463 (471)
Q Consensus 441 Ris~~~~~e~i~~~~~~l~~~l~ 463 (471)
||+++.++++|++++++|+++++
T Consensus 405 Ris~~~~~e~i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 405 RYCFFKKDENLQKAAEILRKWKG 427 (429)
T ss_dssp EEECCSCHHHHHHHHHHHHHHSC
T ss_pred EEEecCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999998864
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-53 Score=426.87 Aligned_cols=367 Identities=12% Similarity=0.112 Sum_probs=297.1
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCC---C--CCChHHHHHHHHHHH-H-cCCCCCCCCCCCHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP---D--FDTPVLIAEAGINAI-R-EGFTRYTPNAGTLELRSA 140 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~---~--~~~p~~v~~a~~~~~-~-~~~~~Y~~~~G~~~lr~~ 140 (471)
+..++..++++++..+.+.++.. ..+++|+|+.|.+ + +.+++.+.++.. .+ . ...++|+|..|.++||++
T Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~--~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~a 80 (405)
T 3k7y_A 4 LLSSLENIEVDNILKTAREFKED--TCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTL 80 (405)
T ss_dssp GGGGCCCCCCCHHHHHHHHHTTS--SCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHH
T ss_pred hhhcCCCCCCChHHHHHHHHhcC--CCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHH
Confidence 45688889999887776655432 3457999999972 2 345788888877 43 3 356789999999999999
Q ss_pred HHHHHHHHhCCCCCCCc--EEEeCChHHHHHHHHHHhcC--CCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcC
Q 012095 141 ICHKLKEENGLSYTPDQ--ILVSNGAKQSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 216 (471)
Q Consensus 141 ia~~~~~~~g~~~~~~~--i~it~G~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~l 216 (471)
+++++.+.++..+++++ |++|+|+++++.+++.++++ | |+|++++|+|++|...++.+|++++.+|+..+++|++
T Consensus 81 ia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~ 159 (405)
T 3k7y_A 81 TQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDI 159 (405)
T ss_dssp HHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEE
T ss_pred HHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCc
Confidence 99999777666667764 59999999999999999988 9 9999999999999999999999999999854557899
Q ss_pred CHHHHHhhhcc--CCcEEEEcCC-CCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCC--ccccccCCCCC
Q 012095 217 DPKVLESKLTE--KSRLLILCSP-SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT--HTSFASLPGMW 291 (471)
Q Consensus 217 d~e~l~~~l~~--~~~~i~i~~p-~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~--~~~~~~~~~~~ 291 (471)
|++.+++++++ +++++++++| |||||.+++++++++|+++|++| +++||+||+|.++.+++.. ..++..+....
T Consensus 160 d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~-~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~ 238 (405)
T 3k7y_A 160 NYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHK-KHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKN 238 (405)
T ss_dssp CHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHH-CCEEEEEESCTTTSSSSTTGGGHHHHHHHTTT
T ss_pred CHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC-CeEEEEecCcccccCCCcccchHHHHHHHhcC
Confidence 99999999864 5678888765 89999999999999999999999 9999999999999886421 22233332335
Q ss_pred CceEEEecCCcccCccchhheeeEc---CHHHHHHHH----HHHhcccCCCChHHHHHHHHHHhccCCC---hHHHHHHH
Q 012095 292 ERTLTVNGFSKAFAMTGWRLGYIAG---PKHFVAACN----KIQSQFTSGASSISQKAGVAALGLGYAG---GEVVSKMV 361 (471)
Q Consensus 292 ~~~i~~~S~SK~~g~~G~R~G~v~~---~~~~i~~l~----~~~~~~~~~~~~~~q~aa~~~L~~~~~~---~~~~~~~~ 361 (471)
+++|+++||||+|+|+|||+||+++ ++++++.+. ...+....+++.++|.++..+|.++... .++++.++
T Consensus 239 ~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~ 318 (405)
T 3k7y_A 239 IAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLS 318 (405)
T ss_dssp CCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 7999999999999999999999853 677665543 3344455577899999999998852111 34467778
Q ss_pred HHHHHHHHHHHHHhc----CCC---CCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC
Q 012095 362 KAFRERRDFLVKSFG----ELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 434 (471)
Q Consensus 362 ~~~~~~r~~l~~~L~----~~~---g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f 434 (471)
++|+++|+.+.+.|+ ++. +|++.+|+||||+|++++. +++++| +++||++.||.
T Consensus 319 ~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~----------------~~~~~L-~~~gV~v~p~~-- 379 (405)
T 3k7y_A 319 QRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA----------------KIAEHL-KTHHIYIINNG-- 379 (405)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG----------------GGTTTT-TTTTEECCTTS--
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCH----------------HHHHHH-HHCCEeecCCC--
Confidence 889999999999999 762 2788899999999987752 345667 77899999974
Q ss_pred CCCCcEEEEeec-CHHHHHHHHHHHHHHHHh
Q 012095 435 GDDTCIRISYAA-SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 435 ~~~~~iRis~~~-~~e~i~~~~~~l~~~l~~ 464 (471)
|||++. +++++++++++|+++++.
T Consensus 380 ------Ris~a~~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 380 ------RINVSGITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp ------EEEGGGCCTTHHHHHHHHHHHHHHC
T ss_pred ------eEEEeccCHHHHHHHHHHHHHHHhh
Confidence 999987 889999999999998864
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=412.95 Aligned_cols=365 Identities=34% Similarity=0.579 Sum_probs=324.1
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~ 147 (471)
+++++..++++++.++...+......|+++|+|+.|++++++|+.+.+++.+++..+..+|++..|..++|+++++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~ 81 (370)
T 2z61_A 2 LSKRLLNFESFEVMDILALAQKLESEGKKVIHLEIGEPDFNTPKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKD 81 (370)
T ss_dssp CCHHHHHCCCCTTHHHHHHHHHHHHTTCCCEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHH
T ss_pred hhhhhhhccccHHHHHHHHHHHHHhcCCCEEEccCCCCCCCCCHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHH
Confidence 46677788888888888877777677889999999999988889999999999877677898888999999999999999
Q ss_pred HhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc
Q 012095 148 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 227 (471)
Q Consensus 148 ~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~ 227 (471)
.+|+++++++|++|+|+++++..++++++++||+|++++|+|+++...++..|++++.++ +|+++|++++++
T Consensus 82 ~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~--------~d~~~l~~~l~~ 153 (370)
T 2z61_A 82 KYKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVFCD--------FTVESLEEALSD 153 (370)
T ss_dssp HSSCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEEC--------SSHHHHHHHCCS
T ss_pred HhCCCCChhhEEECCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEeC--------CCHHHHHHhccc
Confidence 899888899999999999999999999999999999999999999999999999999987 589999999988
Q ss_pred CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCcc
Q 012095 228 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307 (471)
Q Consensus 228 ~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 307 (471)
++++|++++|+||||.+++.+ |.++|++| +++||+||+|.++.+++. ..++..+++..++++++.||||.+|++
T Consensus 154 ~~~~v~~~~p~nptG~~~~~~----l~~~~~~~-~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~~i~~~s~sK~~~~~ 227 (370)
T 2z61_A 154 KTKAIIINSPSNPLGEVIDRE----IYEFAYEN-IPYIISDEIYNGLVYEGK-CYSAIEFDENLEKTILINGFSKLYAMT 227 (370)
T ss_dssp SEEEEEEESSCTTTCCCCCHH----HHHHHHHH-CSEEEEECTTTTCBSSSC-CCCGGGTCTTCSSEEEEEESTTTTTCG
T ss_pred CceEEEEcCCCCCcCcccCHH----HHHHHHHc-CCEEEEEcchhhcccCCC-CcCHHHccCCCCcEEEEecChhccCCc
Confidence 899999999999999999955 99999999 999999999999888652 345555543467899999999999999
Q ss_pred chhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC
Q 012095 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL-GYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (471)
Q Consensus 308 G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~-~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p 386 (471)
|+|+||+++++++++.+........++++++.|.++.++|+. + .++++++++.++++++++.+.|+++ |+++..|
T Consensus 228 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 303 (370)
T 2z61_A 228 GWRIGYVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKET---EREINSMIKEFDRRRRLVLKYVKDF-GWEVNNP 303 (370)
T ss_dssp GGCCEEEECCHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHH---HHHHHHHHHHHHHHHHHHHHHHHHT-TCBCCCC
T ss_pred cceEEEEEECHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCC
Confidence 999999999999999998887777778999999998888863 2 5778899999999999999999988 8888889
Q ss_pred CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012095 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLL 463 (471)
Q Consensus 387 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~l~ 463 (471)
++|+|+|++++. +..++.++|++++||.+.||..|+. ++++|++++.+++++++++++|+++++
T Consensus 304 ~~~~~~~~~~~~-------------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 304 IGAYYVFPNIGE-------------DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYANSYENIKEGLERIKEFLN 369 (370)
T ss_dssp CBTTEECCBCSS-------------CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred CcceEEEEecCC-------------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 999999998863 4678999988556999999998875 689999999999999999999998874
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-52 Score=423.43 Aligned_cols=380 Identities=20% Similarity=0.280 Sum_probs=316.2
Q ss_pred cccccccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHH--HHHHH---------HHHHHcCCCCCCCC
Q 012095 63 QVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVL--IAEAG---------INAIREGFTRYTPN 131 (471)
Q Consensus 63 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~--v~~a~---------~~~~~~~~~~Y~~~ 131 (471)
+|...+++++..++++++.++.+.+.. .++++|+|+.|.|+..+++. +..++ ..... ...+|++.
T Consensus 2 ~~~~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~i~l~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~~ 77 (425)
T 2r2n_A 2 NYARFITAASAARNPSPIRTMTDILSR---GPKSMISLAGGLPNPNMFPFKTAVITVENGKTIQFGEEMMK-RALQYSPS 77 (425)
T ss_dssp CGGGGSCHHHHTCCCCSGGGHHHHHHH---SCTTCEECCCCCCCGGGCSEEEEEEEETTSCCEEECHHHHH-HHTSCCCT
T ss_pred chhHHHHHHHhcCCCchHHHHHHHhhc---CCCCeEEcCCcCCCchhCCHHHHHHHHhhcccccccccchh-hhcCCCCC
Confidence 455568899999999988887765542 24579999999998654321 00000 11111 13579999
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCC-------CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEE
Q 012095 132 AGTLELRSAICHKLKEENGLSYT-------PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV 204 (471)
Q Consensus 132 ~G~~~lr~~ia~~~~~~~g~~~~-------~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~ 204 (471)
.|+++||+++++++.+.+|.+.+ +++|++|+|+++++..+++++++|||+|++++|+|.++...++..|++++
T Consensus 78 ~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~ 157 (425)
T 2r2n_A 78 AGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLHPLGCNII 157 (425)
T ss_dssp TCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHGGGTCEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEE
Confidence 99999999999999999998764 37999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCcCCHHHHHhhhc------------cCCcEEEE-cCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCC
Q 012095 205 ILPTRISENFLLDPKVLESKLT------------EKSRLLIL-CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 271 (471)
Q Consensus 205 ~v~~~~~~~~~ld~e~l~~~l~------------~~~~~i~i-~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y 271 (471)
.+|++.+ ++|+++|+++++ +++++|++ ++||||||.+++.+++++|+++|++| +++||+||+|
T Consensus 158 ~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~-~~~li~De~~ 233 (425)
T 2r2n_A 158 NVASDES---GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKY-DFLIIEDDPY 233 (425)
T ss_dssp EECEETT---EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTT
T ss_pred EeCcCCC---CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHc-CCEEEEECCc
Confidence 9998642 489999999886 36788876 79999999999999999999999999 9999999999
Q ss_pred CccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhc--
Q 012095 272 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL-- 349 (471)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~-- 349 (471)
.++.|++....++..++. .+++++++||||.++ +|+|+||+++++++++.+........++++.++|.++.++|+.
T Consensus 234 ~~~~~~g~~~~~~~~~~~-~~~~i~~~s~SK~~~-~GlRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~ 311 (425)
T 2r2n_A 234 YFLQFNKFRVPTFLSMDV-DGRVIRADSFSKIIS-SGLRIGFLTGPKPLIERVILHIQVSTLHPSTFNQLMISQLLHEWG 311 (425)
T ss_dssp GGGBSSSSCCCCTGGGCT-TSCEEEEEESTTTTC-STTCCEEEEEEHHHHHHHHHHHHTTTCSSCHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCccccCC-CCCEEEEccchhhcc-CccceEEEecCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcc
Confidence 999987765566666653 578999999999998 9999999999999999999888777788999999999999874
Q ss_pred -cCCChHHHHHHHHHHHHHHHHHHHHhcC-CCCC-eeeCCCcceEEeEecCCccCCcccCCCCCCCHHHH-HHHHHHcCC
Q 012095 350 -GYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGV-KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESL-CRYLLDKAQ 425 (471)
Q Consensus 350 -~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~g~-~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Ll~~~g 425 (471)
+. ..+|++++++.|+++++++.+.|++ ++|+ .+..|.+|+|+|++++... +..++ .+.|. ++|
T Consensus 312 ~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~-----------~~~~~~~~~l~-~~g 378 (425)
T 2r2n_A 312 EEG-FMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGIN-----------DVKELIEEKAV-KMG 378 (425)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCS-----------CCHHHHHTHHH-HTT
T ss_pred cch-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCC-----------CHHHHHHHHHH-HCC
Confidence 11 1477899999999999999999987 6776 5677899999999998632 44554 55555 569
Q ss_pred EEEECCCCCCC-----CCcEEEEee-cCHHHHHHHHHHHHHHHHhh
Q 012095 426 VALVPGDAFGD-----DTCIRISYA-ASLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 426 V~v~pg~~f~~-----~~~iRis~~-~~~e~i~~~~~~l~~~l~~~ 465 (471)
|.+.||..|+. .+++||+++ .+++++++++++|++++++.
T Consensus 379 v~v~pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 379 VLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp EECEEGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred cEEechhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999874 379999998 59999999999999998753
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-52 Score=419.30 Aligned_cols=378 Identities=27% Similarity=0.474 Sum_probs=333.6
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~ 147 (471)
|++++..++++++.++...+..+...|+++|+|+.|++++++|+.+.+++ +++.++..+|++..|..++++++++++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~ 94 (409)
T 2gb3_A 16 FSDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQPDLKTPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKR 94 (409)
T ss_dssp CCHHHHSCCCCTTGGGHHHHHHHHHTTCEEEECSSCCCCSCCCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCccHHHHHHHHHHHHHhcCCCEEeccCCCCCCCCCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHH
Confidence 78888899998888887777777778889999999999988888999999 88766567898888999999999999998
Q ss_pred HhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc
Q 012095 148 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 227 (471)
Q Consensus 148 ~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~ 227 (471)
.+|+++++++|++|+|+++++..++++++++||+|++++|+|+++...++..|++++.++++.+++|.+ +++|++++++
T Consensus 95 ~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~~ 173 (409)
T 2gb3_A 95 RQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFINE 173 (409)
T ss_dssp TSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCCT
T ss_pred HhCCCCCHHHEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhCc
Confidence 889888889999999999999999999999999999999999999999999999999999875456666 8999999988
Q ss_pred CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCcc
Q 012095 228 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307 (471)
Q Consensus 228 ~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 307 (471)
++++|++++|+||||.+++.+++++|+++|++| |++||+||+|.++.+++. ..++ +....+++++++||||.+|++
T Consensus 174 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~Dea~~~~~~~~~-~~~~--~~~~~~~~i~~~s~sK~~g~~ 249 (409)
T 2gb3_A 174 RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERH-GLFLIVDEVYSEIVFRGE-FASA--LSIESDKVVVIDSVSKKFSAC 249 (409)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCSSC-CCCG--GGSCCTTEEEEEESTTTTTCG
T ss_pred CCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHc-CCEEEEECcccccccCCC-CCCc--cccCCCCEEEEecchhccCCc
Confidence 899999999999999999999999999999999 999999999999887652 2232 222246789999999999999
Q ss_pred chhheeeEcCH-HHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCee-eC
Q 012095 308 GWRLGYIAGPK-HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-SE 385 (471)
Q Consensus 308 G~R~G~v~~~~-~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~-~~ 385 (471)
|+|+||+++++ ++++.+......+. +++.+.|.++.++|+. ...+++++++.++++++++.+.|+++ |+.+ ..
T Consensus 250 G~r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 324 (409)
T 2gb3_A 250 GARVGCLITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLNL---DDSFFDFVRETYRERVETVLKKLEEH-GLKRFTK 324 (409)
T ss_dssp GGCCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCBCC
T ss_pred cceEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHHHc-CceeeeC
Confidence 99999999998 99999988776666 7899999999999975 37889999999999999999999988 8888 78
Q ss_pred CCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHc-----CCEEEECCCCCCC-----CCcEEEEeecCHHHHHHHH
Q 012095 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK-----AQVALVPGDAFGD-----DTCIRISYAASLTTLQAAV 455 (471)
Q Consensus 386 p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~-----~gV~v~pg~~f~~-----~~~iRis~~~~~e~i~~~~ 455 (471)
|.+++|+|++++. .+..+++++|+++ +||.+.||..|+. ++++|++++.+++++++++
T Consensus 325 ~~~~~~~~~~~~~------------~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~~~~e~i~~~~ 392 (409)
T 2gb3_A 325 PSGAFYITAELPV------------EDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAI 392 (409)
T ss_dssp CSBSSEEEEECSS------------SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHH
T ss_pred CCeeEEEEEEeCC------------CCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeCCCHHHHHHHH
Confidence 8999999999872 1678899998877 5999999988864 5799999999999999999
Q ss_pred HHHHHHHHhhCCC
Q 012095 456 ERIKKGLLTLRPG 468 (471)
Q Consensus 456 ~~l~~~l~~~~~~ 468 (471)
++|++++++++.+
T Consensus 393 ~~l~~~l~~~~~~ 405 (409)
T 2gb3_A 393 DVLMEGLKMFCSS 405 (409)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhhc
Confidence 9999999887654
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-52 Score=424.79 Aligned_cols=375 Identities=23% Similarity=0.383 Sum_probs=321.9
Q ss_pred cccccccccCCC-hHHHHHHHHHHHHh--cCCCeEEcCCCCCCCCChHHHHHHHHHHHH-----cCCCCCCCCCCCHHHH
Q 012095 67 SLSPRVNAVKPS-KTVAITDQATALAQ--AGVSVIRLAAGEPDFDTPVLIAEAGINAIR-----EGFTRYTPNAGTLELR 138 (471)
Q Consensus 67 ~~s~~~~~~~~~-~~~~~~~~~~~~~~--~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~-----~~~~~Y~~~~G~~~lr 138 (471)
.++.++..+++. .+..+......... .|+++|+|+.|++++++|+.+.+++.+++. .+...|++..|..+||
T Consensus 38 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr 117 (449)
T 3qgu_A 38 QRNENFGKLRAGYLFPEIARRRKAHQEKNPDAKIISLGIGDTTEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALR 117 (449)
T ss_dssp CCCHHHHHCCSCCHHHHHHHHHHHHHHHCTTCCCEECSSCCCCCCCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHH
T ss_pred hhhHHHHhCCCcchHHHHHHHHHHHHhhCCCCCEEEeeCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHH
Confidence 456677777774 44465555444333 478899999999999999999999999887 4567898889999999
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCE----------EEEecC
Q 012095 139 SAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT----------PVILPT 208 (471)
Q Consensus 139 ~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~----------~~~v~~ 208 (471)
+++++++. +|+++++++|++|+|+++++..+ ..++++||.|++++|+|.++...++..|++ ++.+++
T Consensus 118 ~~ia~~~~--~g~~~~~~~i~~t~G~~~al~~~-~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~ 194 (449)
T 3qgu_A 118 EAVASTFY--GHAGRAADEIFISDGSKCDIARI-QMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVC 194 (449)
T ss_dssp HHHHHHHH--TTTTCCGGGEEEESCHHHHHHHH-HHHHCSSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEEC
T ss_pred HHHHHHHH--cCCCCCHHHEEEccCHHHHHHHH-HHHhCCCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEec
Confidence 99999997 78888899999999999999988 888999999999999999999999999999 999999
Q ss_pred CCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCC
Q 012095 209 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 288 (471)
Q Consensus 209 ~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 288 (471)
+.++++..|++++ +++++|++++||||||.+++.+++++|+++|++| |++||+||+|.++.+++....++..++
T Consensus 195 ~~~~~~~~~~~~~-----~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~-~~~li~Dea~~~~~~~~~~~~~~~~~~ 268 (449)
T 3qgu_A 195 NPDNHFFPDLSKA-----KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKN-GSILVYDAAYALYISNPDCPKTIYEIP 268 (449)
T ss_dssp CGGGTTCCCGGGC-----CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTGGGCCCTTSCSSGGGST
T ss_pred ccccCCcCChhHc-----CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHC-CcEEEEEcchHhhhcCCCCCCCHhhcc
Confidence 8766776676442 5789999999999999999999999999999999 999999999999998876566666666
Q ss_pred CCCCceEEEecCCcccCccchhheeeEcCHHHHH--------HHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHH
Q 012095 289 GMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA--------ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 360 (471)
Q Consensus 289 ~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~--------~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~ 360 (471)
...++++++.||||.+|++|+|+||+++++++++ .+.........+++.++|.++.++|... ..++++++
T Consensus 269 ~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~ 346 (449)
T 3qgu_A 269 GADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPE--GLKEMNAM 346 (449)
T ss_dssp TGGGTEEEEEECSGGGTCTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHH--HHHHHHHH
T ss_pred CCCCcEEEEecchhhcCCccceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhc--CHHHHHHH
Confidence 5568899999999999999999999999988775 4555555556678999999999988741 14678999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CC
Q 012095 361 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DT 438 (471)
Q Consensus 361 ~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~ 438 (471)
+++++++++++.+.|+++ |+++..+++++|+|++++ . .+..++++.|++++||.+.||..|+. ++
T Consensus 347 ~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~ 413 (449)
T 3qgu_A 347 IKFYKENAQILKTTFTEM-GFSVYGGDDAPYIWVGFP-G-----------KPSWDVFAEILERCNIVTTPGSGYGPAGEG 413 (449)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCCEEESSSSSEEEEECT-T-----------SCHHHHHHHHHHHHCEECEEGGGGCGGGTT
T ss_pred HHHHHHHHHHHHHHHHHC-CCeeeCCCCeeEEEEECC-C-----------CCHHHHHHHHHHHCCEEEecchHhCCCCCC
Confidence 999999999999999998 899988999999999997 2 27889999999888999999999875 58
Q ss_pred cEEEEeecCHHHHHHHHHHHHHHHHhh
Q 012095 439 CIRISYAASLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 439 ~iRis~~~~~e~i~~~~~~l~~~l~~~ 465 (471)
+|||++..+++++++++++|++++++-
T Consensus 414 ~iRis~~~~~e~i~~~l~~l~~~~~~~ 440 (449)
T 3qgu_A 414 FVRASAFGSRENILEAVRRFKEAYGKR 440 (449)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHHHC--
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 999999889999999999999998654
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-52 Score=416.34 Aligned_cols=361 Identities=20% Similarity=0.310 Sum_probs=314.9
Q ss_pred cCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q 012095 75 VKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYT 154 (471)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~ 154 (471)
++++++.++.+....+...| ++|+|+.|++++++|+.+.+++.+.+ ....+|++..|..++|+++++++.+.+|.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~g-~~i~l~~~~~~~~~~~~v~~a~~~~~-~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~ 81 (376)
T 3ezs_A 4 FEPYPFERLRALLKEITPKK-RGLDLGIGEPQFETPKFIQDALKNHT-HSLNIYPKSAFEESLRAAQRGFFKRRFKIELK 81 (376)
T ss_dssp CCCCHHHHHHHHHTTCCCSS-CCCBCSSCCCCSCCCHHHHHHHHTTG-GGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCC
T ss_pred CCcchHHHHHHHHHhhhccC-CEEEeCCCCCCCCCCHHHHHHHHHhh-hhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCC
Confidence 45677777776666555567 89999999999999999999998876 44678988889999999999999999998788
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCC--CCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEE
Q 012095 155 PDQILVSNGAKQSILQAVLAVCSP--GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLL 232 (471)
Q Consensus 155 ~~~i~it~G~~~al~~~~~~l~~~--gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i 232 (471)
+++|++|+|+++++..++++++++ ||+|+++.|+|.++...++..|++++.++++.++++. + ++++++.+++++|
T Consensus 82 ~~~i~~t~g~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~-~l~~~~~~~~~~v 158 (376)
T 3ezs_A 82 ENELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKENDFT--P-SLNEKELQEVDLV 158 (376)
T ss_dssp GGGEEEESSSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTSC--C-CCCHHHHHHCSEE
T ss_pred HHHEEECcCcHHHHHHHHHHHcCCCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCCCCcc--h-hHHhhhccCCCEE
Confidence 999999999999999999999999 9999999999999999999999999999998665543 3 6777777789999
Q ss_pred EEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCC-----CCCceEEEecCCcccCcc
Q 012095 233 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG-----MWERTLTVNGFSKAFAMT 307 (471)
Q Consensus 233 ~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-----~~~~~i~~~S~SK~~g~~ 307 (471)
++++||||||.+++.+++++|+++|++| |++||+||+|.++.+++. ..++..... ..++++++.||||.+|++
T Consensus 159 ~~~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 236 (376)
T 3ezs_A 159 ILNSPNNPTGRTLSLEELISWVKLALKH-DFILINDECYSEIYENTP-PPSLLEACMLAGNEAFKNVLVIHSLSKRSSAP 236 (376)
T ss_dssp EECSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBSSSC-CCCHHHHHHHTTCTTCTTEEEEEESTTTTTCG
T ss_pred EEcCCCCCcCCCCCHHHHHHHHHHHHHc-CcEEEEEccchhhccCCC-CCCHHHccccccccccCcEEEEecchhccCCc
Confidence 9999999999999999999999999999 999999999999988762 333333211 358899999999999999
Q ss_pred chhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC
Q 012095 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (471)
Q Consensus 308 G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~ 387 (471)
|+|+||+++++++++.+........++++++.|.++.++|+. .+++++.++.++++++.+.+.|+ |+. .|.
T Consensus 237 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~---~~~--~~~ 307 (376)
T 3ezs_A 237 GLRSGFIAGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWLD----DRHAEFFRNIYANNLKLARKIFK---NTL--IYP 307 (376)
T ss_dssp GGCCEEEEECHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHC----SHHHHHHHHHHHHHHHHHHHHST---TCC--CCS
T ss_pred cceeEEEeeCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhC----cHHHHHHHHHHHHHHHHHHHHhc---CCC--CCC
Confidence 999999999999999999888777888999999999999985 57789999999999999999997 554 678
Q ss_pred cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC----CCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012095 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG----DDTCIRISYAASLTTLQAAVERIKKGLL 463 (471)
Q Consensus 388 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~----~~~~iRis~~~~~e~i~~~~~~l~~~l~ 463 (471)
+++|+|++++ +..+++++|++++||.+.||..|+ .++++||+++.+++++++++++|+++++
T Consensus 308 ~~~~~~~~~~--------------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~ 373 (376)
T 3ezs_A 308 YSFYVYLPVQ--------------NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIETYRE 373 (376)
T ss_dssp BSSEEEEECS--------------CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred cceEEEEECC--------------CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 8999999986 467899999885699999999987 3579999999899999999999999986
Q ss_pred hh
Q 012095 464 TL 465 (471)
Q Consensus 464 ~~ 465 (471)
+.
T Consensus 374 ~~ 375 (376)
T 3ezs_A 374 NH 375 (376)
T ss_dssp C-
T ss_pred hc
Confidence 53
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-51 Score=418.12 Aligned_cols=391 Identities=24% Similarity=0.386 Sum_probs=320.9
Q ss_pred ccccccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCC----CCCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHH
Q 012095 64 VDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP----DFDTPVLIAEAGINAIREG-FTRYTPNAGTLELR 138 (471)
Q Consensus 64 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~----~~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr 138 (471)
|++.+|..... .++++..+...+... ..++++|+|+.|+| .+++|+.+.+++.+++... ..+|++..|..++|
T Consensus 4 ~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr 81 (416)
T 1bw0_A 4 WDVSMSNHAGL-VFNPIRTVSDNAKPS-PSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAR 81 (416)
T ss_dssp CCCCCCHHHHT-CCCHHHHHHHTCCCC-CSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHH
T ss_pred cccCchhhhhc-cccHHHHHHHHHHHh-hcCCCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHH
Confidence 88877764433 344455544332211 12357899999997 5677899999999988764 46798888999999
Q ss_pred HHHHHHHHH------HhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCC
Q 012095 139 SAICHKLKE------ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE 212 (471)
Q Consensus 139 ~~ia~~~~~------~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~ 212 (471)
+++++++.+ .+|.++++++|++|+|+++++..++++++++||+|++++|+|+++...++..|++++.++++.++
T Consensus 82 ~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~ 161 (416)
T 1bw0_A 82 EAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPEN 161 (416)
T ss_dssp HHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGG
T ss_pred HHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCccc
Confidence 999999983 25666788999999999999999999999999999999999999999999999999999987655
Q ss_pred CCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCC----CccccccCC
Q 012095 213 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA----THTSFASLP 288 (471)
Q Consensus 213 ~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~----~~~~~~~~~ 288 (471)
+|.+|+++|+++++++++++++++|+||||.+++.+++++|+++|++| +++||+||+|.++.+++. ...++..+.
T Consensus 162 ~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 240 (416)
T 1bw0_A 162 DWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEEL-RLPLFSDEIYAGMVFKGKDPNATFTSVADFE 240 (416)
T ss_dssp TTEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCCEEEECTTTTCBCCSSCTTCCCCCTTSSC
T ss_pred CCCCCHHHHHHHhccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHc-CCEEEEEccccccccCCCCCCCCccCHHHcc
Confidence 688999999999988889999999999999999999999999999999 999999999999888765 334454444
Q ss_pred CCCCceEEEecCCcccCccchhheeeEcCHH--HHHHHH----HHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHH
Q 012095 289 GMWERTLTVNGFSKAFAMTGWRLGYIAGPKH--FVAACN----KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 362 (471)
Q Consensus 289 ~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~--~i~~l~----~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~ 362 (471)
. .+++++++||||.|+++|+|+||++++++ +++.+. ... ...++++++.|.++.++|+.. ...++++.++
T Consensus 241 ~-~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~ 316 (416)
T 1bw0_A 241 T-TVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVG-MLVCGPCTVVQAALGEALLNT--PQEHLDQIVA 316 (416)
T ss_dssp C-SCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHH-HHHTCSCHHHHHHHHHHHHSS--CHHHHHHHHH
T ss_pred C-CCcEEEEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHh-ccccCCCcHHHHHHHHHHhcc--cHHHHHHHHH
Confidence 3 45789999999999999999999998763 444333 322 134568999999999999842 2678999999
Q ss_pred HHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEE
Q 012095 363 AFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRI 442 (471)
Q Consensus 363 ~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRi 442 (471)
+++++++++.+.|++++|+.+..|.+++|+|++++... .....+..+++++|++++||.+.||..|+.++++||
T Consensus 317 ~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRi 390 (416)
T 1bw0_A 317 KIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEK------YRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRL 390 (416)
T ss_dssp HHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGG------BSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCHHH------cCCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEE
Confidence 99999999999999988998888888999999886310 000025778999887666999999999988899999
Q ss_pred EeecCHHHHHHHHHHHHHHHHhhCC
Q 012095 443 SYAASLTTLQAAVERIKKGLLTLRP 467 (471)
Q Consensus 443 s~~~~~e~i~~~~~~l~~~l~~~~~ 467 (471)
+++.+++++++++++|.+++++.+.
T Consensus 391 s~~~~~e~l~~~l~~l~~~l~~~~~ 415 (416)
T 1bw0_A 391 TTTRPVEVYREAVERIKAFCQRHAA 415 (416)
T ss_dssp ECCSCHHHHHHHHHHHHHHHHHHBC
T ss_pred EecCCHHHHHHHHHHHHHHHHHhhc
Confidence 9988999999999999999987653
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=413.66 Aligned_cols=352 Identities=22% Similarity=0.356 Sum_probs=316.8
Q ss_pred hcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHH
Q 012095 92 QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 171 (471)
Q Consensus 92 ~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~ 171 (471)
..|+++|+|+.|++++++|+.+.+++.+++.++..+|++ .| .++|+++++++.+.+|.++++++|++|+|+++++..+
T Consensus 20 ~~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~ 97 (377)
T 3fdb_A 20 RYGQGVLPLWVAESDFSTCPAVLQAITDAVQREAFGYQP-DG-SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIA 97 (377)
T ss_dssp SSCTTSEECCSSCCCSCCCHHHHHHHHHHHHTTCCSSCC-SS-CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHH
T ss_pred ccCCCeeeecccCCCCCCCHHHHHHHHHHHHcCCCCCCC-CC-HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHH
Confidence 358899999999999999999999999999877788987 77 8999999999999999888899999999999999999
Q ss_pred HHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHH
Q 012095 172 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 251 (471)
Q Consensus 172 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~ 251 (471)
+++++++||+|+++.|+|.++...++..|++++.+|++.+ +|+++++++++++++++++++||||||.+++.++++
T Consensus 98 ~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~ 173 (377)
T 3fdb_A 98 IDHFTPAQSKVIVPTPAYPPFFHLLSATQREGIFIDATGG----INLHDVEKGFQAGARSILLCNPYNPLGMVFAPEWLN 173 (377)
T ss_dssp HHHHSCTTCCEEEEESCCTHHHHHHHHHTCCEEEEECTTS----CCHHHHHHHHHTTCCEEEEESSBTTTTBCCCHHHHH
T ss_pred HHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCCC----CCHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHH
Confidence 9999999999999999999999999999999999998753 899999999998899999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEccCCCccccCC-CCccccccCCCCCCceEEEecCCcccCccchhheeeEc-CHHHHHHHHHHHh
Q 012095 252 EIARIVAKHPRLLVLSDEIYEHIIYAP-ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQS 329 (471)
Q Consensus 252 ~i~~l~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~-~~~~i~~l~~~~~ 329 (471)
+|+++|++| ++++|+||+|.++.+++ ....++..+.. .++++++.||||.+|++|+|+||+++ ++++++.+.....
T Consensus 174 ~l~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~-~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~ 251 (377)
T 3fdb_A 174 ELCDLAHRY-DARVLVDEIHAPLVFDGQHTVAAGVSDTA-ASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSP 251 (377)
T ss_dssp HHHHHHHHT-TCEEEEECTTGGGBSSSCCCCGGGSCHHH-HHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSCH
T ss_pred HHHHHHHHc-CCEEEEEcccchhhcCCCCCcccHHHccC-CCcEEEEEeChHhccCcchhheEEEeCCHHHHHHHHHHHH
Confidence 999999999 99999999999998876 55555555433 57889999999999999999999886 7899999888766
Q ss_pred cccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC-CCCCeeeCCCcceEEeEecCCccCCcccCCC
Q 012095 330 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFG 408 (471)
Q Consensus 330 ~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~ 408 (471)
..++++++++|.++.++|.. ..++++++++.++++++++.+.|++ +||+.+..|++++++|++++...
T Consensus 252 ~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 320 (377)
T 3fdb_A 252 VIKDGASTLGLIAAEAAYRY---GTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQATYLMWIDFRDTT-------- 320 (377)
T ss_dssp HHHCCCCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCSBCSEEEEECTTSC--------
T ss_pred hhcCCCCHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCeeEEEEEECcccC--------
Confidence 66778999999999999986 4788999999999999999999998 78999999999999999997531
Q ss_pred CCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHhh
Q 012095 409 KIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 409 ~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~l~~~ 465 (471)
...++++.|++++||.+.||+.|+. ++++|++++.+++++++++++|+++++++
T Consensus 321 ---~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~~~e~i~~~l~~l~~~l~~~ 376 (377)
T 3fdb_A 321 ---IEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFATSREVLEEAIDRMAKAVSHH 376 (377)
T ss_dssp ---CCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHTTC
T ss_pred ---CCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCCCHHHHHHHHHHHHHHHhhc
Confidence 2256788888877999999999985 68999999999999999999999998764
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-51 Score=415.57 Aligned_cols=357 Identities=23% Similarity=0.338 Sum_probs=319.4
Q ss_pred CeEEcCCCCCC-CCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcEEEeCChHHHHHHHH
Q 012095 96 SVIRLAAGEPD-FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSILQAV 172 (471)
Q Consensus 96 ~~i~l~~g~~~-~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~-~~i~it~G~~~al~~~~ 172 (471)
.+|+|+.|++. +++|+.+++++.+++.+. ...|++..|..++++++++++.+.+|.++++ ++|++|+|+++++..++
T Consensus 40 ~~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~ 119 (407)
T 3nra_A 40 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAV 119 (407)
T ss_dssp CCEETTSCCTTTSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHH
T ss_pred ceeeecCcCCCCCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHH
Confidence 38999999876 778899999999988753 3468888999999999999999999987767 79999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCC----CCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHH
Q 012095 173 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI----SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKN 248 (471)
Q Consensus 173 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~----~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~ 248 (471)
++++++||+|+++.|+|.++...++..|++++.++++. ++++.+|+++|++++++++++|++++||||||.+++.+
T Consensus 120 ~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~ 199 (407)
T 3nra_A 120 AATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAE 199 (407)
T ss_dssp HTTCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEESSCTTTCCCCCHH
T ss_pred HHhCCCCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcCCCCCCCcccCHH
Confidence 99999999999999999999999999999999999843 35678999999999988999999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCC-CCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHH
Q 012095 249 LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP-GMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI 327 (471)
Q Consensus 249 ~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~ 327 (471)
++++|+++|++| +++||+||+|..+.+++....++..+. ...++++++.||||.+|++|+|+||+++++++++.+...
T Consensus 200 ~l~~i~~~~~~~-~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~ 278 (407)
T 3nra_A 200 EIGQIAALAARY-GATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKL 278 (407)
T ss_dssp HHHHHHHHHHHH-TCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHH
Confidence 999999999999 999999999999998876666666654 456899999999999999999999999999999999988
Q ss_pred HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCC
Q 012095 328 QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGF 407 (471)
Q Consensus 328 ~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~ 407 (471)
...+.++++++.|.++.++|.. ..+++++.+++++++++.+.+.|++++|+.+..|.+++|+|++++...
T Consensus 279 ~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------- 348 (407)
T 3nra_A 279 QAIVSLRAAGYSQAVLRGWFDE---APGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLA------- 348 (407)
T ss_dssp HHHHTSSSCHHHHGGGGGTTCC---CTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCSBSSEECCBCCCBS-------
T ss_pred HhhhccCCChHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEeCCCCC-------
Confidence 8888888899999888888875 357888999999999999999999998999988999999999987521
Q ss_pred CCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012095 408 GKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 408 ~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~l~~~~ 466 (471)
.+..++.+.|++++||.+.||..|+. ++++|++++.++++|++++++|++++++++
T Consensus 349 ---~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~~~~l~~~~~~~~ 406 (407)
T 3nra_A 349 ---VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVERYR 406 (407)
T ss_dssp ---SCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCSCHHHHHHHHHHHHHHHHHHB
T ss_pred ---CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHhh
Confidence 26788999988777999999998873 589999999999999999999999998765
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-52 Score=430.91 Aligned_cols=393 Identities=20% Similarity=0.349 Sum_probs=306.3
Q ss_pred ccccccccCCChHHHHHHHHHHHHh---cCC-----CeEEcCCCCCC---CCC----------------------hHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQ---AGV-----SVIRLAAGEPD---FDT----------------------PVLIA 114 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~---~g~-----~~i~l~~g~~~---~~~----------------------p~~v~ 114 (471)
+++++.++.......+...+.++++ +|. ++|++++|+|. ..+ |..++
T Consensus 28 ~~~~~~~~~y~~rg~~~~~a~~~~~~~~~g~~~~f~~~i~~nig~p~~~~~~~~~~~r~~l~l~~~p~~~~~~~~P~~~~ 107 (498)
T 3ihj_A 28 MNPQVKAVEYAVRGPIVLKAGEIELELQRGIKKPFTEVIRANIGDAQAMGQQPITFLRQVMALCTYPNLLDSPSFPEDAK 107 (498)
T ss_dssp ETTEEEEEEEEECCHHHHHHHHHHHHHHTTCCCSSSSCBCCC----------CCHHHHHHHHHHHCGGGGGCSSSCHHHH
T ss_pred HHHHHHHhhhhhcCHHHHHHHHHHHHHhccCCCchhhhhhcCCcCcccccCCcchHHHHHHHHhcCccccCcccCCHHHH
Confidence 4444544443222234455555554 355 89999999973 222 55555
Q ss_pred HHHHHHHHc----CCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCCCCcEEEeCChHHHHHHHHHHhcCCCC----eEEEc
Q 012095 115 EAGINAIRE----GFTRYTPNAGTLELRSAICHKLKEEN-GLSYTPDQILVSNGAKQSILQAVLAVCSPGD----EVIIP 185 (471)
Q Consensus 115 ~a~~~~~~~----~~~~Y~~~~G~~~lr~~ia~~~~~~~-g~~~~~~~i~it~G~~~al~~~~~~l~~~gd----~Vlv~ 185 (471)
+++.+++.+ ....|++..|..++|+++++++.+++ |+++++++|++|+|+++++..++.+++++|| .|+++
T Consensus 108 ~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~ 187 (498)
T 3ihj_A 108 KRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIP 187 (498)
T ss_dssp HHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEE
T ss_pred HHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEe
Confidence 666766664 24679999999999999999999888 4888999999999999999999999999875 99999
Q ss_pred CCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc-----CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhC
Q 012095 186 APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-----KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 260 (471)
Q Consensus 186 ~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~-----~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~ 260 (471)
.|+|+.|...++..|++++.++++++++|.+|+++|++++++ ++++|+++|||||||.+++.+++++|+++|++|
T Consensus 188 ~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~ 267 (498)
T 3ihj_A 188 IPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEE 267 (498)
T ss_dssp ESCCTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999888899999999999976 589999999999999999999999999999999
Q ss_pred CCeEEEEccCCCccccCCC-CccccccCCC-------CCCceEEEecCCccc-CccchhheeeE---cCHHHHHHHHHHH
Q 012095 261 PRLLVLSDEIYEHIIYAPA-THTSFASLPG-------MWERTLTVNGFSKAF-AMTGWRLGYIA---GPKHFVAACNKIQ 328 (471)
Q Consensus 261 ~~~~ii~De~y~~~~~~~~-~~~~~~~~~~-------~~~~~i~~~S~SK~~-g~~G~R~G~v~---~~~~~i~~l~~~~ 328 (471)
+++||+||+|.++.|++. ...++..+.. ...++|+++||||.| |++|+|+||++ +++++++.+.+..
T Consensus 268 -~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~ 346 (498)
T 3ihj_A 268 -KLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLL 346 (498)
T ss_dssp -TCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHH
T ss_pred -CcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHH
Confidence 999999999999999754 4455544311 124589999999999 89999999998 6999999998876
Q ss_pred hcccCCCChHHHHHHHHHHhccC----CChHH---HHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccC
Q 012095 329 SQFTSGASSISQKAGVAALGLGY----AGGEV---VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG 401 (471)
Q Consensus 329 ~~~~~~~~~~~q~aa~~~L~~~~----~~~~~---~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~ 401 (471)
. ...+++.++|.++..++.... ....| ..++++.++++++++.+.|+++||+++.+|+++||+|++++....
T Consensus 347 ~-~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~gg~~~~~~l~~p~~ 425 (498)
T 3ihj_A 347 S-VRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAK 425 (498)
T ss_dssp H-HSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECCCHH
T ss_pred h-ccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEecCCCeEEEEEEeccCchh
Confidence 5 566789999998888886310 01233 467788999999999999999999999999999999987642100
Q ss_pred C----cccCCCCCCCHHHH-HHHHHHcCCEEEECCCCCCC---CCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012095 402 S----EAEGFGKIENSESL-CRYLLDKAQVALVPGDAFGD---DTCIRISYAASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 402 ~----~~~~~~~~~~~~~l-~~~Ll~~~gV~v~pg~~f~~---~~~iRis~~~~~e~i~~~~~~l~~~l~~~~ 466 (471)
. ...+ .+..++ +..+++++||.++||+.|+. +++||++++.+++++++++++|+++++++.
T Consensus 426 ~~~~~~~~g----~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~~~~e~l~~~i~~L~~~~~~~~ 494 (498)
T 3ihj_A 426 AVEAAQAHQ----MAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVKDFHINFL 494 (498)
T ss_dssp HHHHHHHTT----SCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECCSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhcC----CCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 134444 67777777999999999984 359999998899999999999999988764
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=408.33 Aligned_cols=358 Identities=19% Similarity=0.297 Sum_probs=319.7
Q ss_pred cCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHH
Q 012095 93 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 172 (471)
Q Consensus 93 ~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~ 172 (471)
.|+++|+|+.|++++++|+.+.+++.+++.++..+|++. ..++++++++++.+.+|.++++++|++|+|+++++..++
T Consensus 25 ~g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~ 102 (391)
T 3dzz_A 25 LKEKELPMWIAEMDFKIAPEIMASMEEKLKVAAFGYESV--PAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMV 102 (391)
T ss_dssp CCTTCEECCSSCCSSCCCHHHHHHHHHHHTTCCCCCBCC--CHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHH
T ss_pred cCCCceeccccCCCCCCCHHHHHHHHHHHhcCcCCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHH
Confidence 467899999999999999999999999988777788665 699999999999999998888999999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCC-CCCCCcCCHHHHHhhhc-cCCcEEEEcCCCCCcccCCCHHHH
Q 012095 173 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR-ISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLL 250 (471)
Q Consensus 173 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~-~~~~~~ld~e~l~~~l~-~~~~~i~i~~p~NPtG~~~~~~~l 250 (471)
++++++||+|+++.|+|.++...++..|++++.+|++ .+++|.+|+++|+++++ +++++|++++|+||||.+++.+++
T Consensus 103 ~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l 182 (391)
T 3dzz_A 103 RQFTSPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEV 182 (391)
T ss_dssp HHHSCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHH
T ss_pred HHhCCCCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHH
Confidence 9999999999999999999999999999999999986 34567799999999997 789999999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCC-CCceEEEecCCcccCccchhheeeEcC-HHHHHHHHHHH
Q 012095 251 DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQ 328 (471)
Q Consensus 251 ~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~g~~G~R~G~v~~~-~~~i~~l~~~~ 328 (471)
++|+++|++| |++||+||+|.++.+++....++..+... .++++++.||||.+|++|+|+||++++ +++++.+....
T Consensus 183 ~~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~ 261 (391)
T 3dzz_A 183 KRIAELCAKH-QVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESF 261 (391)
T ss_dssp HHHHHHHHHT-TCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHH
Confidence 9999999999 99999999999998877656666665432 478999999999999999999999997 89999988775
Q ss_pred hc-ccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC-CCCCeeeCCCcceEEeEecCCccCCcccC
Q 012095 329 SQ-FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEG 406 (471)
Q Consensus 329 ~~-~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~g~~~~~p~~g~~~~~~~~~~~~~~~~~ 406 (471)
.. ..++++++.+.++.++|.. ..+++++.++.++++++++.+.|++ ++|+.+..|.+++++|++++...
T Consensus 262 ~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------ 332 (391)
T 3dzz_A 262 FLAGIGEPNLLAIPAAIAAYEE---GHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNASYLAWVDISALG------ 332 (391)
T ss_dssp HHHTCSSCCTTHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCCBSSEEEEECGGGC------
T ss_pred HhhccCCCCHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccCceEEEEEehhhcC------
Confidence 43 3457899999999999986 4788999999999999999999998 88999999999999999987520
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEECCCCCCCC--CcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012095 407 FGKIENSESLCRYLLDKAQVALVPGDAFGDD--TCIRISYAASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 407 ~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~--~~iRis~~~~~e~i~~~~~~l~~~l~~~~ 466 (471)
.+..++.++|++++||.+.||..|+.. +++|++++.+++++++++++|.+++++++
T Consensus 333 ----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~~~~ 390 (391)
T 3dzz_A 333 ----MNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLACPKELVIDGMQRLKQGVLNLN 390 (391)
T ss_dssp ----SCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCSCHHHHHHHHHHHHHHHHTCC
T ss_pred ----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence 268899999975569999999998864 79999999999999999999999998764
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=410.77 Aligned_cols=386 Identities=22% Similarity=0.366 Sum_probs=330.5
Q ss_pred ccccccccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCC--ChHHHHHHHHHHHHcC---CCCCCCCCCCHH
Q 012095 62 VQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFD--TPVLIAEAGINAIREG---FTRYTPNAGTLE 136 (471)
Q Consensus 62 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~--~p~~v~~a~~~~~~~~---~~~Y~~~~G~~~ 136 (471)
|+|...+++++..+.++.+..+...+..+..+|+++|+|+.|.|+.. +++.+.+++.+++.+. .. |++..|..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~ 79 (407)
T 2zc0_A 1 MDYTKYLAGRANWIKGSALADVMKKASELQKKGVKLISLAAGDPDPELIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPE 79 (407)
T ss_dssp CCGGGGSCGGGGGCCCCHHHHHHHHHHHHHHSSCCCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHH
T ss_pred CcchhhhhhhhccCCchHHHHHHHhhhcccCCCCceEeCCCCCCCchhCCHHHHHHHHHHHHhhcccccc-CCCCCCCHH
Confidence 34444578888888888887777666544456778999999987654 5788999999888753 35 988889999
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcC
Q 012095 137 LRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 216 (471)
Q Consensus 137 lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~l 216 (471)
+|+++++++.+.+|.++++++|++|+|+++++..++++++++||+|++++|+|.++...++..|++++.+|++.+ ++
T Consensus 80 l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~---~~ 156 (407)
T 2zc0_A 80 LREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVPVDND---GM 156 (407)
T ss_dssp HHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT---EE
T ss_pred HHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCEEEEcccCCC---CC
Confidence 999999999888897778899999999999999999999999999999999999999999999999999998643 38
Q ss_pred CHHHHHhhhc----c--CCcEEE-EcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCC
Q 012095 217 DPKVLESKLT----E--KSRLLI-LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289 (471)
Q Consensus 217 d~e~l~~~l~----~--~~~~i~-i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 289 (471)
|+++|+++++ + ++++|+ +++|+||||.+++.+++++|+++|++| +++||+||+|..+.+++....++..++.
T Consensus 157 d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~ 235 (407)
T 2zc0_A 157 RVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKY-DLLIIEDTAYNFMRYEGGDIVPLKALDN 235 (407)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTSBSSCSSCCCGGGGCS
T ss_pred CHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEECCCcccccCCCCCCChhhcCC
Confidence 9999999987 5 788875 789999999999999999999999999 9999999999998887654455555543
Q ss_pred CCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCCh-HHHHHHHHHHHHHH
Q 012095 290 MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG-EVVSKMVKAFRERR 368 (471)
Q Consensus 290 ~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~-~~~~~~~~~~~~~r 368 (471)
.+++++++||||.++ +|+|+||+++++++++.+......++++++++.|.++.++|+.... . .++++.++.+++++
T Consensus 236 -~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~ 312 (407)
T 2zc0_A 236 -EGRVIVAGTLSKVLG-TGFRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYF-EKYHLEGALLGYKEKR 312 (407)
T ss_dssp -SCCEEEEEESTTTTC-TTSCCEEEECCHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHH-HHHTTTTHHHHHHHHH
T ss_pred -CCCEEEEcccccccC-CCcceEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHH
Confidence 468999999999999 9999999999999999999887777778899999999999986311 3 56788899999999
Q ss_pred HHHHHHhcC-CCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC----CCcEEEE
Q 012095 369 DFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD----DTCIRIS 443 (471)
Q Consensus 369 ~~l~~~L~~-~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~----~~~iRis 443 (471)
+++.+.|++ ++|+.+..|.+++|+|++++.. .+..++.+.|++++||.+.||..|+. ++++|++
T Consensus 313 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis 381 (407)
T 2zc0_A 313 DIMLKALENHLPNAEFTKPIAGMFVMFFLPEG-----------ADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLN 381 (407)
T ss_dssp HHHHHHHHHHCTTSCBCCCSBSSEEEEECSTT-----------CCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEE
T ss_pred HHHHHHHHHhCCCCEEecCCCcEEEEEEcCCC-----------CCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEE
Confidence 999999987 5788887788999999999753 26788999998877999999998863 5799999
Q ss_pred eec-CHHHHHHHHHHHHHHHHhhC
Q 012095 444 YAA-SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 444 ~~~-~~e~i~~~~~~l~~~l~~~~ 466 (471)
++. +++++++++++|+++++++.
T Consensus 382 ~~~~~~~~i~~~~~~l~~~l~~~~ 405 (407)
T 2zc0_A 382 FSRPSKEEIPIGIKKLAKLYKEKF 405 (407)
T ss_dssp CSSSCTTHHHHHHHHHHHHHHHHC
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHh
Confidence 998 78999999999999998764
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-50 Score=405.31 Aligned_cols=352 Identities=24% Similarity=0.407 Sum_probs=314.6
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHH
Q 012095 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 173 (471)
Q Consensus 94 g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~ 173 (471)
+.++|+|+.|++++++|+.+.+++.+++.+....|++ +..++++++++++.+.+|.++++++|++|+|+++++..+++
T Consensus 31 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~--~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~ 108 (391)
T 4dq6_A 31 TNDLLPMWVADMDFKAAPCIIDSLKNRLEQEIYGYTT--RPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLIN 108 (391)
T ss_dssp CSCSEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCBC--CCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHH
T ss_pred CCCceeccccCCCCCCCHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHH
Confidence 5689999999999999999999999998776677755 67999999999999999988889999999999999999999
Q ss_pred HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCC--CCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHH
Q 012095 174 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR--ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 251 (471)
Q Consensus 174 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~--~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~ 251 (471)
+++++||+|+++.|+|.++...++..|++++.+|++ .+++|.+|++++++++++ +++|++++|+||||.+++.++++
T Consensus 109 ~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~ 187 (391)
T 4dq6_A 109 ELTKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD-VKLFILCNPHNPVGRVWTKDELK 187 (391)
T ss_dssp HHSCTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT-EEEEEEESSBTTTTBCCCHHHHH
T ss_pred HhCCCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc-CCEEEEECCCCCCCcCcCHHHHH
Confidence 999999999999999999999999999999999997 456688999999999988 99999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCC-CCceEEEecCCcccCccchhheeeEcCH-HHHHHHHHHHh
Q 012095 252 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAACNKIQS 329 (471)
Q Consensus 252 ~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~g~~G~R~G~v~~~~-~~i~~l~~~~~ 329 (471)
+|+++|++| ++++|+||+|.++.+++....++..+..+ .++++++.||||.+|++|+|+||+++++ ++++.+.....
T Consensus 188 ~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~ 266 (391)
T 4dq6_A 188 KLGDICLKH-NVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFT 266 (391)
T ss_dssp HHHHHHHHT-TCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHH
Confidence 999999999 99999999999998887655566555421 4788999999999999999999999875 89998887754
Q ss_pred cc-cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC-CCCCeeeCCCcceEEeEecCCccCCcccCC
Q 012095 330 QF-TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGF 407 (471)
Q Consensus 330 ~~-~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~ 407 (471)
.+ .++++.++|.++.++|.. .++++++.++.++++++++.+.|++ +||+.+..+++++++|++++.. +
T Consensus 267 ~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~------ 336 (391)
T 4dq6_A 267 RIDIKRNNCFSLVATEASYNN---GESWLESFLEYLESNIDFAIKYINENMPKLKVRKPEGTYLLWVDFSAL-G------ 336 (391)
T ss_dssp HTTCCCCCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCSBSSEEEEECGGG-C------
T ss_pred hhcCCCCCHHHHHHHHHHHhc---hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCCccEEEEEEhhhc-C------
Confidence 44 447899999999999986 4788999999999999999999988 7899999999999999999752 0
Q ss_pred CCCCCHHHHHHHHHHcCCEEEECCCCCCCC--CcEEEEeecCHHHHHHHHHHHHHHH
Q 012095 408 GKIENSESLCRYLLDKAQVALVPGDAFGDD--TCIRISYAASLTTLQAAVERIKKGL 462 (471)
Q Consensus 408 ~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~--~~iRis~~~~~e~i~~~~~~l~~~l 462 (471)
.+..++.++|++++||.+.||..|+.. +++|++++.+++++++++++|++++
T Consensus 337 ---~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 337 ---LSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLACPRSMLEEALIRIKNAI 390 (391)
T ss_dssp ---CCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 268899999988779999999998754 8999999999999999999999876
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-50 Score=420.74 Aligned_cols=355 Identities=20% Similarity=0.291 Sum_probs=294.9
Q ss_pred hHHHHHHHHHHHHc----CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhc-CCCCeEEE
Q 012095 110 PVLIAEAGINAIRE----GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-SPGDEVII 184 (471)
Q Consensus 110 p~~v~~a~~~~~~~----~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~-~~gd~Vlv 184 (471)
|..+++++.+++.. ....|++..|..++|+++++++.+.+|.++++++|++|+|+++++..++.+++ ++||+|++
T Consensus 108 p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv 187 (500)
T 3tcm_A 108 SADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILV 187 (500)
T ss_dssp CHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEE
T ss_pred CHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEE
Confidence 45566666666665 35789999999999999999999999988899999999999999999999998 89999999
Q ss_pred cCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc------CCcEEEEcCCCCCcccCCCHHHHHHHHHHHH
Q 012095 185 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVA 258 (471)
Q Consensus 185 ~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~------~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~ 258 (471)
++|+|+.|...++..|++++.++++.+++|.+|+++|++++++ ++++|++++||||||.++|.+++++|+++|+
T Consensus 188 ~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~ 267 (500)
T 3tcm_A 188 PIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCK 267 (500)
T ss_dssp EESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred eCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHH
Confidence 9999999999999999999999999887899999999999976 7899999999999999999999999999999
Q ss_pred hCCCeEEEEccCCCccccCCC-Ccccccc----CC--CCCCceEEEecCCccc-CccchhheeeEc---CHHHHHHHHHH
Q 012095 259 KHPRLLVLSDEIYEHIIYAPA-THTSFAS----LP--GMWERTLTVNGFSKAF-AMTGWRLGYIAG---PKHFVAACNKI 327 (471)
Q Consensus 259 ~~~~~~ii~De~y~~~~~~~~-~~~~~~~----~~--~~~~~~i~~~S~SK~~-g~~G~R~G~v~~---~~~~i~~l~~~ 327 (471)
+| +++||+||+|.++.|++. ...++.. +. ....++++++||||.| |++|+|+||+++ ++++++.+.+.
T Consensus 268 ~~-~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~ 346 (500)
T 3tcm_A 268 NE-GLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKI 346 (500)
T ss_dssp HH-TCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHH
T ss_pred Hc-CCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHH
Confidence 99 999999999999998643 3444432 21 1234689999999999 899999999998 89999999887
Q ss_pred HhcccCCCChHHHHHHHHHHhccCC-------ChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCcc
Q 012095 328 QSQFTSGASSISQKAGVAALGLGYA-------GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYY 400 (471)
Q Consensus 328 ~~~~~~~~~~~~q~aa~~~L~~~~~-------~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~ 400 (471)
.. ...+++.++|.++..+|..... ...++.++++.++++++++.+.|++++|+++.+|+++||+|+++....
T Consensus 347 ~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~lp~ 425 (500)
T 3tcm_A 347 AS-VNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQ 425 (500)
T ss_dssp HH-TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBTTEECCEECCCH
T ss_pred Hh-cccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCCeEEEEeeeecCch
Confidence 64 5678999999999999874210 135577888999999999999999999999999999999997654210
Q ss_pred CC-cccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012095 401 GS-EAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 401 ~~-~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~---~~~iRis~~~~~e~i~~~~~~l~~~l~~~~ 466 (471)
+. ......+..+...++..+++++||+++||+.|+. .++||++++.+++++++++++|+++++++.
T Consensus 426 ~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~i~~l~~~~~~~~ 495 (500)
T 3tcm_A 426 KAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTVFHEAFM 495 (500)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESCSCTTTHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence 00 0000000012344566777778999999999984 358999999988999999999999988754
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-50 Score=414.55 Aligned_cols=372 Identities=18% Similarity=0.202 Sum_probs=324.7
Q ss_pred ccCCChHHHHHHHHHHHH-hcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCC-CCCCCCCCCHHHHHHHHHHHHHHhCC
Q 012095 74 AVKPSKTVAITDQATALA-QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGF-TRYTPNAGTLELRSAICHKLKEENGL 151 (471)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~-~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~~~~~~g~ 151 (471)
.+.+++++.+......+. ..|+++|+|+.|++++++|+.+.+++.+++.++. .+|++..|..++|+++++++++.+|+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~ 101 (437)
T 3g0t_A 22 DLGMASIRDLVALVTNLEKATGTKFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNI 101 (437)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHTCCCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCC
T ss_pred cCCCcHHHHHHHHHHHHHHhcCCCEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCC
Confidence 444566767766665544 3588999999999999999999999999988666 88988889999999999999999999
Q ss_pred CCCCCcEEEeCChHHHHHHHHHHhc--CCCC--eEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhh-c
Q 012095 152 SYTPDQILVSNGAKQSILQAVLAVC--SPGD--EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL-T 226 (471)
Q Consensus 152 ~~~~~~i~it~G~~~al~~~~~~l~--~~gd--~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l-~ 226 (471)
++++++|++|+|+++++..++++++ ++|| +|+++.|+|.++...++..|++++.++++ +++|.+|+++|++++ +
T Consensus 102 ~~~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~ 180 (437)
T 3g0t_A 102 DIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLF-EYRGEKLREKLESYLQT 180 (437)
T ss_dssp CCCGGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGG-GGCTTHHHHHHHHHHTT
T ss_pred CCCcccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeec-CCCCccCHHHHHHHHhc
Confidence 8899999999999999999999999 9999 99999999999999999999999999997 467889999999999 7
Q ss_pred cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCcc----cc-ccCCCCCCceEEEecCC
Q 012095 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT----SF-ASLPGMWERTLTVNGFS 301 (471)
Q Consensus 227 ~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~----~~-~~~~~~~~~~i~~~S~S 301 (471)
+++++|++++||||||.+++.+++++|+++|++| |++||+||+|.++.+++.... ++ ..+....++++++.|||
T Consensus 181 ~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 259 (437)
T 3g0t_A 181 GQFCSIIYSNPNNPTWQCMTDEELRIIGELATKH-DVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSS 259 (437)
T ss_dssp TCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEEST
T ss_pred CCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHC-CcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCc
Confidence 7899999999999999999999999999999999 999999999999888632111 11 34433368899999999
Q ss_pred cccCccchhheeeEcCHHHHH-H-----------------HHHHHhcccCCCChHHHHHHHHHHhccCCChHH---HHHH
Q 012095 302 KAFAMTGWRLGYIAGPKHFVA-A-----------------CNKIQSQFTSGASSISQKAGVAALGLGYAGGEV---VSKM 360 (471)
Q Consensus 302 K~~g~~G~R~G~v~~~~~~i~-~-----------------l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~---~~~~ 360 (471)
|.+|++|+|+||+++++++++ . +........++++.++|.++.++|+.. ..| +++.
T Consensus 260 K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~ 336 (437)
T 3g0t_A 260 KAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKAC---NDGEYNFRDS 336 (437)
T ss_dssp TTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHH---HTTSCCHHHH
T ss_pred cCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCc---HhHHHHHHHH
Confidence 999999999999999999999 7 777666667789999999999999862 223 8899
Q ss_pred HHHHHHHHHHHHHHhcCCCCCeee-------CCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC
Q 012095 361 VKAFRERRDFLVKSFGELEGVKMS-------EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 433 (471)
Q Consensus 361 ~~~~~~~r~~l~~~L~~~~g~~~~-------~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~ 433 (471)
+++++++++++.+.|+++ |+.+. ++.+++|+|++++.. +..++.+.|+++ ||.+.||..
T Consensus 337 ~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~L~~~-gi~v~~~~~ 402 (437)
T 3g0t_A 337 VIEYGRKARIMKKMFLDN-GFNIVYDKDGNEPLADGFYFTVGYKGM------------DSSKLIEKFVRY-GMCAITLKT 402 (437)
T ss_dssp HHHHHHHHHHHHHHHHTT-TEEESSCEETTEECCSSSEEEEEETTC------------CHHHHHHHHHHT-TEECEESTT
T ss_pred HHHHHHHHHHHHHHHHHc-CCEEeccccCCCCCceeEEEEEecCCC------------CHHHHHHHHHHc-CeEEeeccc
Confidence 999999999999999999 88887 448899999999732 788999998876 999999998
Q ss_pred CCCC--CcEEEEeec-CHHHHHHHHHHHHHHHHh
Q 012095 434 FGDD--TCIRISYAA-SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 434 f~~~--~~iRis~~~-~~e~i~~~~~~l~~~l~~ 464 (471)
|+.. +++|++++. +++++++++++|++++++
T Consensus 403 ~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 403 TGSKRNEAMRICTSLLPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp TTCCCTTCEEEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 8754 789999998 889999999999998764
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-50 Score=407.85 Aligned_cols=357 Identities=24% Similarity=0.344 Sum_probs=313.3
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHH
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~ 174 (471)
+++|+|+.|++++++|+.+.+++.+++.....+|++. ..++|+++++++.+.+|+++++++|++|+|+++++..++++
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~ 108 (399)
T 1c7n_A 31 NEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVRE 108 (399)
T ss_dssp TTCCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHH
T ss_pred CCceeeeecCCCCCCCHHHHHHHHHHHhcCCCCCCCC--cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHH
Confidence 3799999999998889999999999887666788653 89999999999998889877889999999999999999999
Q ss_pred hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCC-CCCcCCHHHHHhhhc-cCCcEEEEcCCCCCcccCCCHHHHHH
Q 012095 175 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS-ENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDE 252 (471)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~ld~e~l~~~l~-~~~~~i~i~~p~NPtG~~~~~~~l~~ 252 (471)
++++||+|++++|+|+++...++..|++++.+|++.+ ++|.+|+++|+++++ +++++|++++||||||.++|.+++++
T Consensus 109 l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~ 188 (399)
T 1c7n_A 109 FTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQK 188 (399)
T ss_dssp HCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHH
T ss_pred hcCCCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHH
Confidence 9999999999999999999999999999999998633 357799999999997 68899999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCC-CCceEEEecCCcccCccchhheeeEcC-HHHHHHHHHHHhc
Q 012095 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQ 330 (471)
Q Consensus 253 i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~g~~G~R~G~v~~~-~~~i~~l~~~~~~ 330 (471)
|+++|++| +++||+||+|.++.+++....++..+... .++++++.||||.+|++|+|+||++++ +++++.+......
T Consensus 189 i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~ 267 (399)
T 1c7n_A 189 IKDIVLKS-DLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDA 267 (399)
T ss_dssp HHHHHHHS-SCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhh
Confidence 99999999 99999999999998876544455554321 368899999999999999999999997 6799999887766
Q ss_pred ccC-CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC-CCCCeeeCCCcceEEeEecCCccCCcccCCC
Q 012095 331 FTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFG 408 (471)
Q Consensus 331 ~~~-~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~ 408 (471)
+++ ++++++|.++.++|+. ..+++++.++.++++++++.+.|++ +||+.+..+.++|++|++++.. +
T Consensus 268 ~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~------- 336 (399)
T 1c7n_A 268 TSGMPFTTLGYKACEICYKE---CGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRAL-K------- 336 (399)
T ss_dssp TTCCCCCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGG-C-------
T ss_pred cccCCCCHHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecCCceEEEEEEcccC-C-------
Confidence 644 6799999999999986 3688999999999999999999998 8899988899999999998742 0
Q ss_pred CCCCHHHHHHHHHHcCCEEEECCCCCC--CCCcEEEEeecCHHHHHHHHHHHHHHHHhhCC
Q 012095 409 KIENSESLCRYLLDKAQVALVPGDAFG--DDTCIRISYAASLTTLQAAVERIKKGLLTLRP 467 (471)
Q Consensus 409 ~~~~~~~l~~~Ll~~~gV~v~pg~~f~--~~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~ 467 (471)
.+..++++.|++++||.+.||..|+ .++++||+++.+++++++++++|.+++++++.
T Consensus 337 --~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~l~~~l~~l~~~l~~~~~ 395 (399)
T 1c7n_A 337 --MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLKN 395 (399)
T ss_dssp --CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC-
T ss_pred --CCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEeccCHHHHHHHHHHHHHHHHHHHh
Confidence 1678899998866799999999887 46899999999889999999999999988763
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-50 Score=403.50 Aligned_cols=353 Identities=18% Similarity=0.303 Sum_probs=307.0
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHH-HHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLE-LRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~-lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~ 174 (471)
++|+|+.|++++++|+.+.+++.+++.....+|++. ..+ +|+++++++++.+|+++++++|++|+|+++++..++++
T Consensus 29 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~ 106 (390)
T 1d2f_A 29 DLLPFTISDMDFATAPCIIEALNQRLMHGVFGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQ 106 (390)
T ss_dssp -CEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHH
T ss_pred CeeEeeecCCCCCCCHHHHHHHHHHHhCCCCCCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHH
Confidence 689999999999889999999999887666788654 678 99999999999889878889999999999999999999
Q ss_pred hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCC-CCcCCHHHHHhhhcc-CCcEEEEcCCCCCcccCCCHHHHHH
Q 012095 175 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE-NFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDE 252 (471)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~-~~~ld~e~l~~~l~~-~~~~i~i~~p~NPtG~~~~~~~l~~ 252 (471)
++++||+|+++.|+|+++...++..|++++.+|++.++ +|.+|+++|++++++ ++++|++++|+||||.+++.+++++
T Consensus 107 l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~ 186 (390)
T 1d2f_A 107 WSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEI 186 (390)
T ss_dssp SSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHH
T ss_pred hcCCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHH
Confidence 99999999999999999999999999999999987653 577999999999975 7899999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcC-HHHHHHHHHHHh-c
Q 012095 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQS-Q 330 (471)
Q Consensus 253 i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~-~~~i~~l~~~~~-~ 330 (471)
|+++|++| +++||+||+|.++.+++....++..+.... ... +.||||.+|++|+|+||++++ +++++.+..... .
T Consensus 187 l~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~-~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~ 263 (390)
T 1d2f_A 187 MADLCERH-GVRVISDEIHMDMVWGEQPHIPWSNVARGD-WAL-LTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGR 263 (390)
T ss_dssp HHHHHHHT-TCEEEEECTTTTCBCSSSCCCCGGGTCCSS-EEE-EECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTT
T ss_pred HHHHHHHc-CCEEEEEccccccccCCCCCcCHHHcchhh-Hhh-ccCccHhhcccChhheEEEECCHHHHHHHHHHHhhh
Confidence 99999999 999999999999988765555555554322 023 999999999999999999985 789998887765 4
Q ss_pred ccC-CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC-CCCCeeeCCCcceEEeEecCCccCCcccCCC
Q 012095 331 FTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFG 408 (471)
Q Consensus 331 ~~~-~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~ 408 (471)
..+ +++.+.|.++.++|+. ..+++++.++.++++++++.+.|++ +||+.+..|.+++++|++++.. +
T Consensus 264 ~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~------- 332 (390)
T 1d2f_A 264 DGLSSPSVLALTAHIAAYQQ---GAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPL-N------- 332 (390)
T ss_dssp SCCCSCCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGG-C-------
T ss_pred cccCCCCHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEecCCccEEEEEEcccc-C-------
Confidence 443 6899999999999986 4678999999999999999999998 7899888899999999998742 0
Q ss_pred CCCCHHHHHHHHHHcCCEEEECCCCCC--CCCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012095 409 KIENSESLCRYLLDKAQVALVPGDAFG--DDTCIRISYAASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 409 ~~~~~~~l~~~Ll~~~gV~v~pg~~f~--~~~~iRis~~~~~e~i~~~~~~l~~~l~~~~ 466 (471)
.+..++.+.|++++||.+.||..|+ .++++||+++.+++++++++++|++++++++
T Consensus 333 --~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~l~~~~ 390 (390)
T 1d2f_A 333 --IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAVR 390 (390)
T ss_dssp --CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred --CCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHhhC
Confidence 1677899998866799999999886 3579999999998999999999999998753
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-50 Score=411.20 Aligned_cols=374 Identities=17% Similarity=0.216 Sum_probs=308.2
Q ss_pred cccccccCCChHHHHHHHHHHHHhc--CCCeEEcCCCCC-----CCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHH
Q 012095 69 SPRVNAVKPSKTVAITDQATALAQA--GVSVIRLAAGEP-----DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAI 141 (471)
Q Consensus 69 s~~~~~~~~~~~~~~~~~~~~~~~~--g~~~i~l~~g~~-----~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~i 141 (471)
..+.....++++..+.+.+.+.... |.++|+|+.|+| ++++|+.+.+++.+....+..+|++..|.++||+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~i 89 (418)
T 3rq1_A 10 KHAKGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAA 89 (418)
T ss_dssp TTTTTCCCCCHHHHHHHHHHHHHHHHCGGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHH
T ss_pred hhcCCCCCCchHHHHHHHHHhhhhhhcCCCeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCCCCChHHHHHHH
Confidence 4455556677777877777766655 668999999987 777888898888765443456899999999999999
Q ss_pred HHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHH
Q 012095 142 CHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVL 221 (471)
Q Consensus 142 a~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l 221 (471)
++++...++.. .+++|++|+|+++++..+++++++|||+|++++|+|.+|...++..|++++.+|++.++ |.+|++.+
T Consensus 90 a~~~~~~~~~~-~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~-~~~d~~~l 167 (418)
T 3rq1_A 90 EKECFGNFRPE-GHIRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEH-NNFNHEAF 167 (418)
T ss_dssp HHHHHGGGCCS-SEEEEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHHHHHHHTTCEEEEECSBCTT-SSBCHHHH
T ss_pred HHHHhcccCcc-ccccEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHHHHHHHcCCEEEEEeeeCCC-CCcCHHHH
Confidence 99997766532 23499999999999999999999999999999999999999999999999999986544 78999999
Q ss_pred Hhhhcc----CCc-EEEEcCC-CCCcccCCCHHHHHHHHHHHH------hCCCeEEEEccCCCccccCCCCcccccc-CC
Q 012095 222 ESKLTE----KSR-LLILCSP-SNPTGSVYPKNLLDEIARIVA------KHPRLLVLSDEIYEHIIYAPATHTSFAS-LP 288 (471)
Q Consensus 222 ~~~l~~----~~~-~i~i~~p-~NPtG~~~~~~~l~~i~~l~~------~~~~~~ii~De~y~~~~~~~~~~~~~~~-~~ 288 (471)
++++++ +++ ++++++| |||||.+++.+++++|+++|+ +| +++||+||+|.++.+++....++.. .+
T Consensus 168 ~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~ 246 (418)
T 3rq1_A 168 QNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRN-NVIIGIDVAYLDYSGEKDEVRAFFNKFS 246 (418)
T ss_dssp HHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSC-EEEEEEECTTGGGSSCHHHHHGGGGGGT
T ss_pred HHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCC-CeEEEEecccccccCChHHHHHHHHHHH
Confidence 999875 666 7778999 999999999999999999999 89 9999999999998876533333332 23
Q ss_pred CCCCc--eEEEecCCcccCccchhheeeEc---CHHHHHHHHHHHhcc----cCCCChHHHHHHHHHHhccCC---ChHH
Q 012095 289 GMWER--TLTVNGFSKAFAMTGWRLGYIAG---PKHFVAACNKIQSQF----TSGASSISQKAGVAALGLGYA---GGEV 356 (471)
Q Consensus 289 ~~~~~--~i~~~S~SK~~g~~G~R~G~v~~---~~~~i~~l~~~~~~~----~~~~~~~~q~aa~~~L~~~~~---~~~~ 356 (471)
...++ +++++||||.+|++|+|+||+++ ++++++.+....... ..+++.++|.++..+|.+... ..++
T Consensus 247 ~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 326 (418)
T 3rq1_A 247 HLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAE 326 (418)
T ss_dssp TCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHH
Confidence 32344 58999999999999999999999 999999988765432 246889999999999975210 0223
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC
Q 012095 357 VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD 436 (471)
Q Consensus 357 ~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~ 436 (471)
++++++.++++++++.+.|+++ |+++..|+++||+|++++ +..++++.|. ++||.+.||.
T Consensus 327 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~-~~gi~v~~g~---- 386 (418)
T 3rq1_A 327 RNCYYQLIRDRADIFKQEAAQV-GLPMLPYRGGFFITIPTD--------------SANAICEELK-KEHIYVIALA---- 386 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TCCCCCCCSSSEEEEECT--------------THHHHHHHHH-HTTEECEECS----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCceEEEEcCCC--------------CHHHHHHHHH-hCCEEEecCC----
Confidence 4567789999999999999988 899999999999998874 5778888765 4599999984
Q ss_pred CCcEEEEeec-CHHHHHHHHHHHHHHHHhhC
Q 012095 437 DTCIRISYAA-SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 437 ~~~iRis~~~-~~e~i~~~~~~l~~~l~~~~ 466 (471)
+++||+++. +++++++++++|+++++++.
T Consensus 387 -~~iRis~~~~~~~~i~~~~~~l~~~l~~~~ 416 (418)
T 3rq1_A 387 -NGIRIAACGIPKCQMTGLAEKIYNAMKSLG 416 (418)
T ss_dssp -SEEEEEGGGSCHHHHTTHHHHHHHHHHHTT
T ss_pred -CCeEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 689999986 99999999999999998765
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-50 Score=409.69 Aligned_cols=375 Identities=24% Similarity=0.395 Sum_probs=315.2
Q ss_pred ccccccccccCC-ChHHHHHHHHHHHH--hcCCCeEEcCCCCCCCCChHHHHHHHHHHHH-----cCCCCCCCCCCCHHH
Q 012095 66 VSLSPRVNAVKP-SKTVAITDQATALA--QAGVSVIRLAAGEPDFDTPVLIAEAGINAIR-----EGFTRYTPNAGTLEL 137 (471)
Q Consensus 66 ~~~s~~~~~~~~-~~~~~~~~~~~~~~--~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~-----~~~~~Y~~~~G~~~l 137 (471)
..+++++..+++ +.+..+........ ..++++|+|+.|++++++|+.+.+++.+++. .+..+|++..|..+|
T Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l 103 (432)
T 3ei9_A 24 VSRNSNMSKLQAGYLFPEIARRRSAHLLKYPDAQVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPL 103 (432)
T ss_dssp CCCCHHHHHCCSSCHHHHHHHHHHHHHHHCTTCCCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHH
T ss_pred cccChHHHhCCCCccHHHHHHHHHhhhhcCCCCCeEEccCCCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHH
Confidence 345667777877 46666554433222 2466899999999999999999999999887 345689888999999
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCC------------EEEE
Q 012095 138 RSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA------------TPVI 205 (471)
Q Consensus 138 r~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~------------~~~~ 205 (471)
++++++++.+ +..+++++|++|+|+++++.. +..++++||.|++++|+|+++...++..|. +++.
T Consensus 104 ~~~ia~~~~~--~~~~~~~~i~~t~G~~~al~~-l~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 180 (432)
T 3ei9_A 104 RAAIAKTFYG--GLGIGDDDVFVSDGAKCDISR-LQVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEY 180 (432)
T ss_dssp HHHHHHHHHT--TTTCCGGGEEEESCHHHHHHH-HHHHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEE
T ss_pred HHHHHHHHHc--cCCCCcceEEECCChHHHHHH-HHHHcCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEE
Confidence 9999999974 555788999999999999996 577889999999999999999999998884 6788
Q ss_pred ecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccc
Q 012095 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 285 (471)
Q Consensus 206 v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~ 285 (471)
++++.++++..|++. .+++++|++++||||||.+++.+++++|+++|++| |++||+||+|.++.+++. ..++.
T Consensus 181 ~~~~~~~~~~~~l~~-----~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~-~~~li~Dea~~~~~~~~~-~~~~~ 253 (432)
T 3ei9_A 181 MRCTPENGFFPDLST-----VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKN-GSIIVYDSAYAMYMSDDN-PRSIF 253 (432)
T ss_dssp EECCGGGTTSCCGGG-----CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTGGGCCSSC-CSSGG
T ss_pred eccCcccCCcCChhh-----CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHc-CcEEEEccchHhhccCCC-CCChh
Confidence 888766666666543 35789999999999999999999999999999999 999999999999887753 33455
Q ss_pred cCCCCCCceEEEecCCcccCccchhheeeEcCHHH--------HHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHH
Q 012095 286 SLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF--------VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVV 357 (471)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~--------i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~ 357 (471)
.+....+++++++||||.||++|+|+||+++++++ ++.+.+.......++++++|.++.+++... ..+|+
T Consensus 254 ~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~ 331 (432)
T 3ei9_A 254 EIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPE--GLEAM 331 (432)
T ss_dssp GSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHH--HHHHH
T ss_pred hcCCCCCeEEEEecchhccCCcccceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcc--cHHHH
Confidence 55544678999999999999999999999999888 788877766666778999999999888631 24688
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-
Q 012095 358 SKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD- 436 (471)
Q Consensus 358 ~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~- 436 (471)
++++++++++++++.+.|.++ |+++..+.+++|+|++++.. +..++++.|++++||.+.||..|+.
T Consensus 332 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ll~~~gv~v~~g~~f~~~ 398 (432)
T 3ei9_A 332 HKVIGFYKENTNIIIDTFTSL-GYDVYGGKNAPYVWVHFPNQ------------SSWDVFAEILEKTHVVTTPGSGFGPG 398 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCEEECSSSSEEEEECTTS------------CHHHHHHHHHHHHCEECEEGGGGCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CceecCCCcceEEEEECCCC------------CHHHHHHHHHHHCCEEEeCchHhCCC
Confidence 999999999999999999988 89888888899999999842 6788999999888999999999985
Q ss_pred -CCcEEEEeecCHHHHHHHHHHHHHHHHhh
Q 012095 437 -DTCIRISYAASLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 437 -~~~iRis~~~~~e~i~~~~~~l~~~l~~~ 465 (471)
++++||+++.+++++++++++|++--+..
T Consensus 399 ~~~~iRis~~~~~e~l~~~l~rl~~~~~~~ 428 (432)
T 3ei9_A 399 GEGFVRVSAFGHRENILEACRRFKQLYKHH 428 (432)
T ss_dssp GTTEEEEECCSCHHHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEEecCCHHHHHHHHHHHHHHhhhc
Confidence 58999999889999999999999865543
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-51 Score=414.27 Aligned_cols=381 Identities=21% Similarity=0.329 Sum_probs=323.4
Q ss_pred cccccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCC--ChHHHHHHHHHHHHcC---CCCCCCCCCCHHHHH
Q 012095 65 DVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFD--TPVLIAEAGINAIREG---FTRYTPNAGTLELRS 139 (471)
Q Consensus 65 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~--~p~~v~~a~~~~~~~~---~~~Y~~~~G~~~lr~ 139 (471)
+..+++++..++++.+..+...+ .++++|+|+.|.|+.. +++.+.+++.+++... ..+|++..|..++|+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~ 92 (425)
T 1vp4_A 18 EGKISKIGQNMKSSIIREILKFA-----ADKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQ 92 (425)
T ss_dssp HHHCCHHHHTCCCCCHHHHTTTT-----TSTTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHH
T ss_pred HhhhhhhhhcCCCcHHHHHHHhc-----cCCCceeCCCCCCCcccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHH
Confidence 34567777777777665544321 3567999999987654 5788999999888653 368988889999999
Q ss_pred HHHHHHHHHhCCC-CCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCH
Q 012095 140 AICHKLKEENGLS-YTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDP 218 (471)
Q Consensus 140 ~ia~~~~~~~g~~-~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~ 218 (471)
++++++.+.+|.+ +++++|++|+|+++++..++++++++||+|++++|+|.++...++..|++++.+|++.+ ++|+
T Consensus 93 ~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~---~~d~ 169 (425)
T 1vp4_A 93 QILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLEDD---GMDL 169 (425)
T ss_dssp HHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT---EECH
T ss_pred HHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeccCCC---CCCH
Confidence 9999998887876 78899999999999999999999999999999999999999999999999999998753 3899
Q ss_pred HHHHhhhcc--------CCcEEE-EcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCC
Q 012095 219 KVLESKLTE--------KSRLLI-LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289 (471)
Q Consensus 219 e~l~~~l~~--------~~~~i~-i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 289 (471)
++|++++++ ++++|+ +++|+||||.+++.+++++|+++|++| +++||+||+|.++.+++....++..++.
T Consensus 170 ~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~ 248 (425)
T 1vp4_A 170 NVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKY-DLFIVEDDPYGALRYEGETVDPIFKIGG 248 (425)
T ss_dssp HHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECSSTTCBCSSCCCCCHHHHHC
T ss_pred HHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHc-CCEEEEECCCccccCCCCCCcCHHHhCC
Confidence 999999875 788885 799999999999999999999999999 9999999999999887654445544432
Q ss_pred CCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHH
Q 012095 290 MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRD 369 (471)
Q Consensus 290 ~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~ 369 (471)
.+++++++||||.+| +|+|+||+++++++++.+......+++++++++|.++.++|+... ..++++++++.++++++
T Consensus 249 -~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~ 325 (425)
T 1vp4_A 249 -PERVVLLNTFSKVLA-PGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYD-LLEQLKPTIELYRRKRT 325 (425)
T ss_dssp -TTTEEEEEESTTTTC-GGGCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSC-HHHHTHHHHHHHHHHHH
T ss_pred -CCCEEEEeccccccc-cccceEEEeeCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHH
Confidence 468999999999999 999999999999999999887777777789999999999998632 15788999999999999
Q ss_pred HHHHHhcC-CC---CCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC----CCcEE
Q 012095 370 FLVKSFGE-LE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD----DTCIR 441 (471)
Q Consensus 370 ~l~~~L~~-~~---g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~----~~~iR 441 (471)
++.+.|++ ++ |+.+..|.+++|+|++++... +..++++.|+++ ||.+.||..|+. ++++|
T Consensus 326 ~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~~~~-----------~~~~l~~~l~~~-gi~v~~g~~f~~~~~~~~~iR 393 (425)
T 1vp4_A 326 VMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGF-----------DTWEMFEYAKRK-KVFYVPGRVFKVYDEPSPSMR 393 (425)
T ss_dssp HHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTTC-----------CTTTTHHHHHHH-TEECEEGGGGCTTCCCCSEEE
T ss_pred HHHHHHHHhCCCCCceEEecCCccEEEEEEcCCCC-----------CHHHHHHHHHHC-CCEEECchhhcCCCCCCCeEE
Confidence 99999987 35 688888899999999997531 456788988887 999999998863 57999
Q ss_pred EEeec-CHHHHHHHHHHHHHHHHhhCCCC
Q 012095 442 ISYAA-SLTTLQAAVERIKKGLLTLRPGV 469 (471)
Q Consensus 442 is~~~-~~e~i~~~~~~l~~~l~~~~~~~ 469 (471)
|+++. +++++++++++|+++++++..+.
T Consensus 394 is~~~~~~e~i~~~l~~l~~~l~~~~~~~ 422 (425)
T 1vp4_A 394 LSFCLPPDEKIVEGIKRLREVVLEYGKEK 422 (425)
T ss_dssp EECSSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 99998 79999999999999998765443
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-50 Score=406.73 Aligned_cols=354 Identities=24% Similarity=0.356 Sum_probs=317.3
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHH
Q 012095 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 173 (471)
Q Consensus 94 g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~ 173 (471)
|+++|+|+.|++++++|+.+.+++.+++......|++. ..++++++++++.+.+|+++++++|++|+|+++++..+++
T Consensus 60 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~ 137 (421)
T 3l8a_A 60 NPELLQMWVADMDFLPVPEIKEAIINYGREHIFGYNYF--NDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQ 137 (421)
T ss_dssp CTTCEECCSSCCCSCCCHHHHHHHHHHHHHCCSSCBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHH
T ss_pred CCCeeecccCCCCCCCCHHHHHHHHHHHhcCCcCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHH
Confidence 77899999999999999999999999988777788654 3899999999999999988889999999999999999999
Q ss_pred HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCC-CCCCCcCCHHHHHhhhc-cCCcEEEEcCCCCCcccCCCHHHHH
Q 012095 174 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR-ISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLD 251 (471)
Q Consensus 174 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~-~~~~~~ld~e~l~~~l~-~~~~~i~i~~p~NPtG~~~~~~~l~ 251 (471)
+++++||+|+++.|+|.++...++..|.+++.+|++ .+++|.+|+++|+++++ +++++|++++|+||||.++++++++
T Consensus 138 ~~~~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~ 217 (421)
T 3l8a_A 138 AFSEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLI 217 (421)
T ss_dssp HHSCTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHH
T ss_pred HhcCCCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHH
Confidence 999999999999999999999999999999999987 45668899999999998 7899999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCC-CCCceEEEecCCcccCccchhheeeEcC-HHHHHHHHHHHh
Q 012095 252 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG-MWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQS 329 (471)
Q Consensus 252 ~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~g~~G~R~G~v~~~-~~~i~~l~~~~~ 329 (471)
+|+++|++| +++||+||+|.++.+++....++..+.. ..++++++.|+||.+|++|+|+||++++ +++++.+.....
T Consensus 218 ~l~~l~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~ 296 (421)
T 3l8a_A 218 KIAELCKKH-GVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQL 296 (421)
T ss_dssp HHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHH
Confidence 999999999 9999999999999988766666666653 2578999999999999999999999998 899999887653
Q ss_pred c-ccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCC
Q 012095 330 Q-FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFG 408 (471)
Q Consensus 330 ~-~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~ 408 (471)
. ..++++++++.++.++|+. .++|++++++.++++++++.+.|++++++.+..+.++|++|++++.. +
T Consensus 297 ~~~~~~~n~~~~~a~~aal~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~~~~~~~~v~~~~~-~------- 365 (421)
T 3l8a_A 297 ANNQHEVPTVGMIATQAAFQY---GKPWLEELKTVIEGNIKLVIKELEAKTKIKVMEPEGTYLVWLDFSAY-A------- 365 (421)
T ss_dssp HTTCSCCCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECCSBSSEEEEECGGG-T-------
T ss_pred hcccCCCCHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCCCeeEEEEEecccc-C-------
Confidence 3 3447899999999999986 47899999999999999999999887899999999999999999752 0
Q ss_pred CCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012095 409 KIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLL 463 (471)
Q Consensus 409 ~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~l~ 463 (471)
.+..++.+.|++++||.+.||..|+. ++++||+++.++++|++++++|+++++
T Consensus 366 --~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 366 --IAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVATPKNTVQEALSRIISVFG 420 (421)
T ss_dssp --CCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHC-
T ss_pred --CCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 15678999998878999999999975 589999999999999999999998864
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-49 Score=398.53 Aligned_cols=366 Identities=29% Similarity=0.499 Sum_probs=306.9
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~ 147 (471)
+++++..++++.+..+...+.. +++|+|+.|+|++++|+.+.+++.+++.+ ...|++..|..+||+.+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-----~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~-- 74 (381)
T 1v2d_A 3 LHPRTEAAKESIFPRMSGLAQR-----LGAVNLGQGFPSNPPPPFLLEAVRRALGR-QDQYAPPAGLPALREALAEEF-- 74 (381)
T ss_dssp CCGGGGGC---CHHHHHHHHHH-----HTCEECCCCSCSSCCCHHHHHHHHHHTTT-SCSCCCTTCCHHHHHHHHHHH--
T ss_pred hhhhhhhcCccHHHHHHHHHhc-----CCeEEecCCCCCCCCCHHHHHHHHHHHHH-hcCCCCCCCCHHHHHHHHHhc--
Confidence 5677788877776665544332 34899999999998899999999998865 567988789999999999995
Q ss_pred HhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCC--CCCCCcCCHHHHHhhh
Q 012095 148 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR--ISENFLLDPKVLESKL 225 (471)
Q Consensus 148 ~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~--~~~~~~ld~e~l~~~l 225 (471)
+ +++++|++|+|+++++..++++++++||+|++++|+|+++...++..|++++.++++ ++ ++.+|+++|++++
T Consensus 75 --~--~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~~~~d~~~l~~~l 149 (381)
T 1v2d_A 75 --A--VEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPE-GFRLDLSALEKAL 149 (381)
T ss_dssp --T--SCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETT-EEECCHHHHHTTC
T ss_pred --C--CChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCc-cCCcCHHHHHHhc
Confidence 3 467899999999999999999999999999999999999999999999999999986 32 3779999999999
Q ss_pred ccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccC
Q 012095 226 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305 (471)
Q Consensus 226 ~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 305 (471)
++++++|++++|+||||.+++.+++++|+++|++| |++||+||+|.++.+ +....++..+ ..++++++.||||.+|
T Consensus 150 ~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~-g~~~~~~~~~--~~~~~~~~~s~sK~~~ 225 (381)
T 1v2d_A 150 TPRTRALLLNTPMNPTGLVFGERELEAIARLARAH-DLFLISDEVYDELYY-GERPRRLREF--APERTFTVGSAGKRLE 225 (381)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBS-SSCCCCHHHH--CTTTEEEEEEHHHHTT
T ss_pred CcCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHc-CCEEEEEcCcccccc-CCCCCCHHHh--cCCCEEEEeechhhcC
Confidence 88899999999999999999999999999999999 999999999999887 4333444443 3578999999999999
Q ss_pred ccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC
Q 012095 306 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385 (471)
Q Consensus 306 ~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~ 385 (471)
++|+|+||+++++++++.+........++++++.|.++.++|+... ..+++++++++++++++++.+.|++. |+++..
T Consensus 226 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 303 (381)
T 1v2d_A 226 ATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLAR-REGFYEALREGYRRRRDLLAGGLRAM-GLRVYV 303 (381)
T ss_dssp CGGGCCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEEC
T ss_pred CcccceEEEEeCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHHHHHHHHHHHC-CCEecC
Confidence 9999999999999999999887766677789999999999988521 04678899999999999999999986 899888
Q ss_pred CCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC----CCcEEEEeecCHHHHHHHHHHHHHH
Q 012095 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD----DTCIRISYAASLTTLQAAVERIKKG 461 (471)
Q Consensus 386 p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~----~~~iRis~~~~~e~i~~~~~~l~~~ 461 (471)
|.+++|+|++++.. + +..+++++||.+.||..|+. ++++|++++.+++++++++++|+++
T Consensus 304 ~~~~~~~~~~~~~~------------~----~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~~~~~i~~~~~~l~~~ 367 (381)
T 1v2d_A 304 PEGTYFLMAELPGW------------D----AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRV 367 (381)
T ss_dssp CSBSSEEEEECTTC------------C----HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHH
T ss_pred CCcceEEEEecChH------------h----HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHH
Confidence 88899999998641 2 34455566999999998874 5799999999999999999999999
Q ss_pred HHhhCCC
Q 012095 462 LLTLRPG 468 (471)
Q Consensus 462 l~~~~~~ 468 (471)
+++.+..
T Consensus 368 l~~~r~~ 374 (381)
T 1v2d_A 368 VNSPREA 374 (381)
T ss_dssp C------
T ss_pred Hhhcccc
Confidence 8876543
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-50 Score=408.91 Aligned_cols=370 Identities=16% Similarity=0.182 Sum_probs=305.2
Q ss_pred ccccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCC---CCCCCCh--HHHHHHHHHHHHc-CCCCCCCCCCCHHHHH
Q 012095 66 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAG---EPDFDTP--VLIAEAGINAIRE-GFTRYTPNAGTLELRS 139 (471)
Q Consensus 66 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g---~~~~~~p--~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~ 139 (471)
+++++++..++++++..+...+.. ...+++|+|+.| +|+..+| +.+.+++.+++.+ ...+|++..|..++|+
T Consensus 22 ~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~ 99 (420)
T 4f4e_A 22 MSLFSAVELAPRDPILGLNEAFNA--DTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDA 99 (420)
T ss_dssp CCTTTTCCCCCCCHHHHHHHHHHH--CCCSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHH
T ss_pred cCHhhcCCcCCCChHHHHHHHHHh--cCCCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHH
Confidence 457889999999988888766554 234579999999 6776665 8999999998876 4568999999999999
Q ss_pred HHHHHHHHHhCCCCCCC--cEEEeCChHHHHHHHH--HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCc
Q 012095 140 AICHKLKEENGLSYTPD--QILVSNGAKQSILQAV--LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 215 (471)
Q Consensus 140 ~ia~~~~~~~g~~~~~~--~i~it~G~~~al~~~~--~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ 215 (471)
++++++....+..++++ +|++|+|+++++..++ ..++++||+|++++|+|.+|...++..|++++.+|+..++++.
T Consensus 100 ~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 179 (420)
T 4f4e_A 100 SVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNG 179 (420)
T ss_dssp HHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTE
T ss_pred HHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCc
Confidence 99999976555444678 9999999999999984 4668999999999999999999999999999999985445788
Q ss_pred CCHHHHHhhhc---cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCC-CccccccCCCCC
Q 012095 216 LDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA-THTSFASLPGMW 291 (471)
Q Consensus 216 ld~e~l~~~l~---~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~ 291 (471)
+|++.+++.++ ++++++++++||||||.+++.+++++|+++|++| |++||+||+|.++.+++. ...++..+....
T Consensus 180 ~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~~ 258 (420)
T 4f4e_A 180 VNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKAR-RLVPFLDIAYQGFGESIEADAAAVRLFAAAN 258 (420)
T ss_dssp ECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTTSSSCTTGGGHHHHHHHHTT
T ss_pred cCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC-CcEEEEccccccccCCcchhhHHHHHHHhcC
Confidence 99999999997 5778889999999999999999999999999999 999999999999988742 233444443346
Q ss_pred CceEEEecCCcccCccchhheeeEc---CHHHHHH----HHHHHhcccCCCChHHHHHHHHHHhccCC---ChHHHHHHH
Q 012095 292 ERTLTVNGFSKAFAMTGWRLGYIAG---PKHFVAA----CNKIQSQFTSGASSISQKAGVAALGLGYA---GGEVVSKMV 361 (471)
Q Consensus 292 ~~~i~~~S~SK~~g~~G~R~G~v~~---~~~~i~~----l~~~~~~~~~~~~~~~q~aa~~~L~~~~~---~~~~~~~~~ 361 (471)
+++++++||||.||++|+|+||+++ ++++++. +....+....+++.+.|.++..+|..... .++++++++
T Consensus 259 ~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 338 (420)
T 4f4e_A 259 LNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMR 338 (420)
T ss_dssp CCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 8899999999999999999999863 5666554 33333445667889999999988875211 146688999
Q ss_pred HHHHHHHHHHHHHhcCC---CCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCC
Q 012095 362 KAFRERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT 438 (471)
Q Consensus 362 ~~~~~~r~~l~~~L~~~---~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~ 438 (471)
++|+++++++.+.|+++ +|+.+..|++|||+|+.++ ... +..+++++||.+.|+.
T Consensus 339 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~---------------~~~-~~~~l~~~gI~v~~~~------ 396 (420)
T 4f4e_A 339 DRIRAMRNGLVERLKAAGIERDFSFINAQRGMFSYSGLT---------------SAQ-VDRLREEFGIYAVSTG------ 396 (420)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCTHHHHSCSSEEECCCC---------------HHH-HHHHHHHHCEECCTTS------
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceeECCCccEEEEeCCC---------------HHH-HHHHHHhCCEEecCCC------
Confidence 99999999999999986 4788888999999997763 334 4445556699999963
Q ss_pred cEEEEeec-CHHHHHHHHHHHHHHH
Q 012095 439 CIRISYAA-SLTTLQAAVERIKKGL 462 (471)
Q Consensus 439 ~iRis~~~-~~e~i~~~~~~l~~~l 462 (471)
|++++. +++++++++++|++++
T Consensus 397 --Ris~~~~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 397 --RICVAALNTRNLDVVANAIAAVL 419 (420)
T ss_dssp --EEEGGGCCTTTHHHHHHHHHHHH
T ss_pred --eEEEecCCHHHHHHHHHHHHHHh
Confidence 999997 8888999999999876
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-49 Score=400.37 Aligned_cols=372 Identities=25% Similarity=0.393 Sum_probs=298.5
Q ss_pred ccccccccCC-ChHHHHHHHHHHHH--hcCCCeEEcCCCCCCCCChHHHHHHHHHHHHc-----CCCCCCCCCCCHHHHH
Q 012095 68 LSPRVNAVKP-SKTVAITDQATALA--QAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-----GFTRYTPNAGTLELRS 139 (471)
Q Consensus 68 ~s~~~~~~~~-~~~~~~~~~~~~~~--~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~-----~~~~Y~~~~G~~~lr~ 139 (471)
+++++.++.+ +.+..+........ ..|+++|+|+.|++++++|+.+.+++.+++.. ...+|++..|..+||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~ 82 (400)
T 3asa_A 3 RNPHFVSLTKNYLFADLQKRVAQFRLENPQHTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQ 82 (400)
T ss_dssp CCHHHHTCCCCCHHHHHHHHHHHHHHHCTTSCCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHH
T ss_pred cchhhhccCCcccHHHHHHHHHHhhhhcCCCceEeccCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHH
Confidence 4667777766 44555544444332 24678999999999988889999999888764 2467988889999999
Q ss_pred HHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCE-EEEecCCCCCCCcCCH
Q 012095 140 AICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT-PVILPTRISENFLLDP 218 (471)
Q Consensus 140 ~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~-~~~v~~~~~~~~~ld~ 218 (471)
++++++. +|. +++++|++|+|+++++..++. ++++||.|++++|+|.++...++..|++ ++.+|++.++++..|+
T Consensus 83 ~la~~l~--~g~-~~~~~v~~~~G~~~al~~~~~-~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l 158 (400)
T 3asa_A 83 KLSEDFY--RGF-VDAKEIFISDGAKVDLFRLLS-FFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEF 158 (400)
T ss_dssp HHHHTTS--TTS-SCGGGEEEESCHHHHHHHHHH-HHCSSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCCC
T ss_pred HHHHHHH--cCC-CCHHHEEEccChHHHHHHHHH-HcCCCCEEEECCCCcHHHHHHHHHcCCcceEecccchhcCcccCh
Confidence 9999964 464 578999999999999998654 5589999999999999999999999999 9999987655555554
Q ss_pred HHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEe
Q 012095 219 KVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVN 298 (471)
Q Consensus 219 e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~ 298 (471)
++ + +++++|++++||||||.+++.+++++|+++|++| +++||+||+|.++.+++....++..++...+++++++
T Consensus 159 ~~----~-~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 232 (400)
T 3asa_A 159 PE----D-THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEH-EILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEIN 232 (400)
T ss_dssp CT----T-CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEE
T ss_pred hh----c-cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHc-CCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEe
Confidence 32 1 5789999999999999999999999999999999 9999999999988776543344555543346799999
Q ss_pred cCCcccCccchhheeeEcCHHH-------HHHHHHHHhcc-cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Q 012095 299 GFSKAFAMTGWRLGYIAGPKHF-------VAACNKIQSQF-TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 370 (471)
Q Consensus 299 S~SK~~g~~G~R~G~v~~~~~~-------i~~l~~~~~~~-~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~ 370 (471)
||||.+|++|+|+||+++++++ ++.+....... ..+++.++|.++.++|+.. +++++++.+++++++
T Consensus 233 s~sK~~g~~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-----~~~~~~~~~~~~~~~ 307 (400)
T 3asa_A 233 SFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSIL-----PQLEAIHYYRENSDL 307 (400)
T ss_dssp ECCGGGTTTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT-----TTCHHHHHHHHHHHH
T ss_pred cchhhcCCcchheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcH-----HHHHHHHHHHHHHHH
Confidence 9999999999999999999988 67665432222 2358999999999999862 577888999999999
Q ss_pred HHHHhcCCCCCeeeCCCcceEEeEe-cCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecC
Q 012095 371 LVKSFGELEGVKMSEPQGAFYLFID-FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAAS 447 (471)
Q Consensus 371 l~~~L~~~~g~~~~~p~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~ 447 (471)
+.+.|+++ |+++..|.+++|+|++ ++... +..+++++|++++||.+.||..|+. ++++||++..+
T Consensus 308 l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~~~ 375 (400)
T 3asa_A 308 LRKALLAT-GFEVFGGEHAPYLWVKPTQANI-----------SDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLGK 375 (400)
T ss_dssp HHHHHHHT-TCEEEECSSSSEEEEECCCTTC-----------CTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECCSC
T ss_pred HHHHHHHC-CCeeeCCCCceEEEEeccCCCC-----------CHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEeeCC
Confidence 99999988 8988888888999999 76431 4557888888777999999998863 57999998779
Q ss_pred HHHHHHHHHHHHHHHHhhC
Q 012095 448 LTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 448 ~e~i~~~~~~l~~~l~~~~ 466 (471)
++++++++++|++++++..
T Consensus 376 ~e~i~~~l~~l~~~~~~~~ 394 (400)
T 3asa_A 376 REDILAACERLQMAPALQS 394 (400)
T ss_dssp HHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 9999999999999887643
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-49 Score=407.03 Aligned_cols=352 Identities=18% Similarity=0.256 Sum_probs=302.1
Q ss_pred CCCeEEcCCCCC-CCCChHHH--HHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---EEEeCChHH
Q 012095 94 GVSVIRLAAGEP-DFDTPVLI--AEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQ---ILVSNGAKQ 166 (471)
Q Consensus 94 g~~~i~l~~g~~-~~~~p~~v--~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~---i~it~G~~~ 166 (471)
.+++|+|+.|+| ++++|+.+ .+++.+++.. ...+|++..|..+||+++++++.+.+ +.+++++ |++|+|+++
T Consensus 46 ~~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~-~~~~~~~~~~i~~t~g~~~ 124 (430)
T 2x5f_A 46 KSTTYNATIGMATNKDGKMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDN-PELSIDNMSRPIVTNALTH 124 (430)
T ss_dssp TTCSEECCCSSCEETTEECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHC-TTCCGGGBCCCEEESHHHH
T ss_pred CCCcEEeeeeeccCCCCchhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccC-cccCCCccceEEEcCCchH
Confidence 356899999999 88877666 7776665544 46789888899999999999998764 6677889 999999999
Q ss_pred HHHHHHHHhcCCCCeEEEcCCCCCChHHHHHH-cCCEEEEecCCCCCCCcCCHHHHHhhhcc---CCcEEEEcCCCCCcc
Q 012095 167 SILQAVLAVCSPGDEVIIPAPFWVSYPEMARI-ADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTG 242 (471)
Q Consensus 167 al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~-~G~~~~~v~~~~~~~~~ld~e~l~~~l~~---~~~~i~i~~p~NPtG 242 (471)
++..++++++++||+|++++|+|.++...++. .|++++.++++.++ |.+|++++++++++ +++++++++||||||
T Consensus 125 al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~-~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG 203 (430)
T 2x5f_A 125 GLSLVGDLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKD-GHYTTDSLVEALQSYNKDKVIMILNYPNNPTG 203 (430)
T ss_dssp HHHHHHHHHCCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTT-SCBCSHHHHHHHHHCCSSEEEEEECSSCTTTC
T ss_pred HHHHHHHHHhCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCcc-CCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCC
Confidence 99999999999999999999999999999999 99999999987544 77999999999976 789999999999999
Q ss_pred cCCCHHHHHHHHHHHHh-----CCCeEEEEccCCCccccCCCCccccc-cCCCCCCc---eEEEecCCcccCccchhhee
Q 012095 243 SVYPKNLLDEIARIVAK-----HPRLLVLSDEIYEHIIYAPATHTSFA-SLPGMWER---TLTVNGFSKAFAMTGWRLGY 313 (471)
Q Consensus 243 ~~~~~~~l~~i~~l~~~-----~~~~~ii~De~y~~~~~~~~~~~~~~-~~~~~~~~---~i~~~S~SK~~g~~G~R~G~ 313 (471)
.+++.+++++|+++|++ | +++||+||+|.++.+++....++. .+....++ +++++||||.+|++|+|+||
T Consensus 204 ~~~~~~~l~~i~~~~~~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~ 282 (430)
T 2x5f_A 204 YTPTHKEVTTIVEAIKALANKGT-KVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGF 282 (430)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTC-EEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEE
T ss_pred CcCCHHHHHHHHHHHHhhhhccC-CEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEE
Confidence 99999999999999999 9 999999999999988765444444 44333567 89999999999999999999
Q ss_pred eEc---CHHHHHHHHHHHhc----ccCCCChHHHHHHHHHHh-ccCCChHHHHHHHHHHHHHHHHHHHHhc----CCCCC
Q 012095 314 IAG---PKHFVAACNKIQSQ----FTSGASSISQKAGVAALG-LGYAGGEVVSKMVKAFRERRDFLVKSFG----ELEGV 381 (471)
Q Consensus 314 v~~---~~~~i~~l~~~~~~----~~~~~~~~~q~aa~~~L~-~~~~~~~~~~~~~~~~~~~r~~l~~~L~----~~~g~ 381 (471)
+++ ++++++.+...... ..++++.+.|.++.++|+ +..+ .+.++++++.++++++.+.+.|+ +. |+
T Consensus 283 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~ 360 (430)
T 2x5f_A 283 MTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQF-DKEIEQNIQTLKERYEVTKEVVYADQYHS-HW 360 (430)
T ss_dssp EEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHH-HHHHHHHHHHHHHHHHHHHHHHTCGGGTT-TE
T ss_pred EEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCC-Cc
Confidence 999 99999999876655 567799999999999998 6211 23344499999999999999998 55 78
Q ss_pred eeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee-cCHHHHHHHHHHHHH
Q 012095 382 KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA-ASLTTLQAAVERIKK 460 (471)
Q Consensus 382 ~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~-~~~e~i~~~~~~l~~ 460 (471)
.+..|++|+|+|++++ . .+..+++++|++++||.+.|| .++++||+++ .+++++++++++|++
T Consensus 361 ~~~~~~~g~~~~~~~~-~-----------~~~~~~~~~l~~~~gi~v~~g----~~~~iRis~~~~~~e~i~~~~~~l~~ 424 (430)
T 2x5f_A 361 QAYDFNSGYFMAIKVH-D-----------VDPEALRKHLIDKYSIGVIAL----NATDIRIAFSCVEKDDIPHVFDSIAK 424 (430)
T ss_dssp EECCCCBSSEEEEEES-S-----------SCHHHHHHHHHHHHCEECEEC----SSSEEEEEGGGSCGGGHHHHHHHHHH
T ss_pred eeeCCCceEEEEeCCC-C-----------CCHHHHHHHHHHhCCEEEecC----CCCeEEEEEecCCHHHHHHHHHHHHH
Confidence 8888999999999997 2 167899999987459999998 3579999999 588999999999999
Q ss_pred HHHhhC
Q 012095 461 GLLTLR 466 (471)
Q Consensus 461 ~l~~~~ 466 (471)
++++++
T Consensus 425 ~l~~~~ 430 (430)
T 2x5f_A 425 AIDDLR 430 (430)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 998753
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-48 Score=393.42 Aligned_cols=367 Identities=21% Similarity=0.367 Sum_probs=312.8
Q ss_pred cccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCC--ChHHHHHHHHHHHHcC---CCCCCCCCCCHHHHHHH
Q 012095 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFD--TPVLIAEAGINAIREG---FTRYTPNAGTLELRSAI 141 (471)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~--~p~~v~~a~~~~~~~~---~~~Y~~~~G~~~lr~~i 141 (471)
+++++...+.++.+..+...+ .++++|+|+.|.++.. +++.+.+++.+++.+. ..+|++..|..+||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~l 83 (397)
T 2zyj_A 9 AFGKGAGRIQASTIRELLKLT-----QRPGILSFAGGLPAPELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFV 83 (397)
T ss_dssp HSCGGGGGCCCCHHHHHHHHH-----TSTTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHH
T ss_pred HhhhhhcccCchHHHHHHhhc-----cCCCceecCCCCCCchhCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHH
Confidence 367777777777665544322 3567999999987643 5788999998887642 36898888999999999
Q ss_pred HHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHH
Q 012095 142 CHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVL 221 (471)
Q Consensus 142 a~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l 221 (471)
++++ | +++++|++|+|+++++..++++++++||+|++++|+|+++...++..|++++.+|++.+ ++|+++|
T Consensus 84 a~~~----g--~~~~~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~---~~d~~~l 154 (397)
T 2zyj_A 84 AEWI----G--VRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEE---GPDLDAL 154 (397)
T ss_dssp HHHH----T--SCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT---EECHHHH
T ss_pred HHHh----C--CChhhEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCCC---CCCHHHH
Confidence 9998 4 46789999999999999999999999999999999999999999999999999998643 3899999
Q ss_pred Hhhhcc-CCcEEE-EcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCC---CceEE
Q 012095 222 ESKLTE-KSRLLI-LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW---ERTLT 296 (471)
Q Consensus 222 ~~~l~~-~~~~i~-i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~---~~~i~ 296 (471)
++++++ ++++|+ +++||||||.+++.+++++|+++|++| +++||+||+|.++.+++....++..+.. . +++++
T Consensus 155 ~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~-~~~~~~~i~ 232 (397)
T 2zyj_A 155 EEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMER-GLVVVEDDAYRELYFGEARLPSLFELAR-EAGYPGVIY 232 (397)
T ss_dssp HHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHH-TCCEEEECTTTTCBCSSCCCCCHHHHHH-HHTCCCEEE
T ss_pred HHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHc-CCEEEEeCCcccccCCCCCCCchhhhCc-ccCCCeEEE
Confidence 999976 789875 699999999999999999999999999 9999999999999887654444444432 2 68899
Q ss_pred EecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHHHHHh
Q 012095 297 VNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG-EVVSKMVKAFRERRDFLVKSF 375 (471)
Q Consensus 297 ~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~-~~~~~~~~~~~~~r~~l~~~L 375 (471)
++||||.+| +|+|+||+++++++++.+......+.++++.++|.++.++|+.. . ++++++++.++++++++.+.|
T Consensus 233 ~~s~sK~~~-~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~~l~~~L 308 (397)
T 2zyj_A 233 LGSFSKVLS-PGLRVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKEG---FSERLERVRRVYREKAQAMLHAL 308 (397)
T ss_dssp EEESTTTTC-GGGCCEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTT---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Eeccccccc-ccceeEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 99999999999999999988777667778999999999999862 2 678899999999999999999
Q ss_pred cC-CC-CCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC----CCCcEEEEeec-CH
Q 012095 376 GE-LE-GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG----DDTCIRISYAA-SL 448 (471)
Q Consensus 376 ~~-~~-g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~----~~~~iRis~~~-~~ 448 (471)
++ +| |+.+..|.+|+|+|++++.. .+..+++++|+++ ||.+.||..|+ .++++||+++. ++
T Consensus 309 ~~~~~~g~~~~~~~~g~~~~~~~~~~-----------~~~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~ 376 (397)
T 2zyj_A 309 DREVPKEVRYTRPKGGMFVWMELPKG-----------LSAEGLFRRALEE-NVAFVPGGPFFANGGGENTLRLSYATLDR 376 (397)
T ss_dssp HHHSCTTSEECCCSBSSEEEEECSTT-----------CCHHHHHHHHHHT-TEEEEESGGGCTTSCCTTEEEEECSSSCH
T ss_pred HHHCCCCeEEccCCccEEEEEEcCCC-----------CCHHHHHHHHHHC-CCEEechHHhcCCCCCCCeEEEEcCCCCH
Confidence 87 57 68888888999999999753 2678899999887 99999999886 35799999998 79
Q ss_pred HHHHHHHHHHHHHHHhh
Q 012095 449 TTLQAAVERIKKGLLTL 465 (471)
Q Consensus 449 e~i~~~~~~l~~~l~~~ 465 (471)
+++++++++|+++++++
T Consensus 377 ~~i~~~~~~l~~~l~~~ 393 (397)
T 2zyj_A 377 EGIAEGVRRLGRALKGL 393 (397)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998765
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-48 Score=397.42 Aligned_cols=360 Identities=20% Similarity=0.351 Sum_probs=297.6
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHH-----------cCCCCCCCCCCCHHHHHHHHHHHHHHhCCC--CCCCcEEEeC
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIR-----------EGFTRYTPNAGTLELRSAICHKLKEENGLS--YTPDQILVSN 162 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~-----------~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~--~~~~~i~it~ 162 (471)
.+|+|+.|++.++++ .+.+++.+... ....+|++..|..+||+++++++++.+|.. +++++|++|+
T Consensus 37 ~~i~l~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~ 115 (428)
T 1iay_A 37 GVIQMGLAENQLCLD-LIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAG 115 (428)
T ss_dssp SBEECSSCCCCSSHH-HHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEE
T ss_pred ceeeeccccchhhHH-HHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEcc
Confidence 589999999887654 77777764310 113578777899999999999999988865 6789999999
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH-HHcCCEEEEecCCCCCCCcCCHHHHHhhhcc------CCcEEEEc
Q 012095 163 GAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA-RIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILC 235 (471)
Q Consensus 163 G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~-~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~------~~~~i~i~ 235 (471)
|+++++..++++++++||.|++++|+|.++...+ ...|++++.+|++.+++|.+|++++++++++ ++++|+++
T Consensus 116 G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~ 195 (428)
T 1iay_A 116 GATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILT 195 (428)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred ChHHHHHHHHHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEc
Confidence 9999999999999999999999999999998755 4789999999987666788999999998863 68899999
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCC-------CCceEEEecCCcccCccc
Q 012095 236 SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-------WERTLTVNGFSKAFAMTG 308 (471)
Q Consensus 236 ~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-------~~~~i~~~S~SK~~g~~G 308 (471)
+||||||.+++.+++++|+++|++| +++||+||+|.++.|++....++..+... .++++++.||||.||++|
T Consensus 196 ~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~G 274 (428)
T 1iay_A 196 NPSNPLGTTLDKDTLKSVLSFTNQH-NIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPG 274 (428)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHTT-TCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGG
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHC-CeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCC
Confidence 9999999999999999999999999 99999999999988765433344444322 478999999999999999
Q ss_pred hhheeeEc-CHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC
Q 012095 309 WRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (471)
Q Consensus 309 ~R~G~v~~-~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~ 387 (471)
+|+||+++ ++++++.+.+.... ++.++++|.++.++|+...+.+++++++++.++++++++.+.|+++ |+++.++.
T Consensus 275 lr~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 351 (428)
T 1iay_A 275 FRVGIIYSFNDDVVNCARKMSSF--GLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCLKNN 351 (428)
T ss_dssp GCEEEEEESCHHHHHHHHHHHTT--SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCS
T ss_pred ceEEEEEeCCHHHHHHHHHHHhc--ccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCC
Confidence 99999998 68899988876543 4588999999999987521112477889999999999999999988 88888787
Q ss_pred cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEee-cCHHHHHHHHHHHHHHHHh
Q 012095 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYA-ASLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 388 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~-~~~e~i~~~~~~l~~~l~~ 464 (471)
+|+|+|++++..... . ...+..++++.|++++||.+.||..|+. ++++||+++ .+++++++++++|++++++
T Consensus 352 ~g~~~~~~~~~~~~~--~---~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 352 AGLFCWMDLRPLLRE--S---TFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp SSSEEEEECGGGCSS--S---SHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHHHHHHHHHHHHHHHT
T ss_pred eeEEEEEechhhcCC--C---chhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 899999999753100 0 0003457889888877999999998875 579999999 5999999999999999876
Q ss_pred h
Q 012095 465 L 465 (471)
Q Consensus 465 ~ 465 (471)
.
T Consensus 427 ~ 427 (428)
T 1iay_A 427 E 427 (428)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-48 Score=387.67 Aligned_cols=334 Identities=22% Similarity=0.290 Sum_probs=291.7
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHH
Q 012095 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 173 (471)
Q Consensus 94 g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~ 173 (471)
.+++|+|+.|++++++|+.+++++.+++. ...+|++..+ .++|+++++++ | +++++|++|+|+++++..+++
T Consensus 29 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~-~~~~y~~~~~-~~lr~~la~~~----~--~~~~~v~~~~g~~~a~~~~~~ 100 (365)
T 3get_A 29 VKEVIKLASNENPFGTPPKAIECLRQNAN-KAHLYPDDSM-IELKSTLAQKY----K--VQNENIIIGAGSDQVIEFAIH 100 (365)
T ss_dssp CSCCEECSSCCCTTCSCHHHHHHHHHHGG-GTTSCCCTTC-HHHHHHHHHHH----T--CCGGGEEEESSHHHHHHHHHH
T ss_pred CCceEEecCCCCCCCCCHHHHHHHHHHHH-hhccCCCCCh-HHHHHHHHHHh----C--CCcceEEECCCHHHHHHHHHH
Confidence 36799999999999999999999999876 3677866655 89999999987 3 467899999999999999999
Q ss_pred HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHH
Q 012095 174 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 253 (471)
Q Consensus 174 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i 253 (471)
+++++||+|+++.|+|..+...++..|++++.+++ .++++ +|++++++++++++++|++++||||||.+++.+++++|
T Consensus 101 ~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~-~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l 178 (365)
T 3get_A 101 SKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQS-ITHNL-DEFKKLYETHKDEIKLIFLCLPNNPLGECLDASEATEF 178 (365)
T ss_dssp HHCCTTCEEEECSSCCTHHHHHHHHHTCEEEECSS-SSCCH-HHHHHHHHHTTTTEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred HHhCCCCEEEEeCCChHHHHHHHHHcCCEEEEEec-CCCCC-CCHHHHHHHhCCCCCEEEEcCCCCCCCCCcCHHHHHHH
Confidence 99999999999999999999999999999999998 34567 99999999999899999999999999999999999999
Q ss_pred HHHHHhCCCeEEEEccCCCcccc--CCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcc
Q 012095 254 ARIVAKHPRLLVLSDEIYEHIIY--APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 331 (471)
Q Consensus 254 ~~l~~~~~~~~ii~De~y~~~~~--~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~ 331 (471)
+++| ++ +++||+||+|.++.| .+....+........+++++++||||.+|++|+|+||+++++++++.+......
T Consensus 179 ~~~~-~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~- 255 (365)
T 3get_A 179 IKGV-NE-DCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRAP- 255 (365)
T ss_dssp HHTS-CT-TSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEECHHHHHHHHHHSCT-
T ss_pred HHhC-CC-CcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcCHHHHHHHHHhcCC-
Confidence 9988 68 999999999998875 433333333322235789999999999999999999999999999999887654
Q ss_pred cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCC
Q 012095 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 411 (471)
Q Consensus 332 ~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~ 411 (471)
++++.+.|.++.++|+. .+++++.+++++++++++.+.|+++ |+.+.++.++ |+|++++..
T Consensus 256 -~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~-~~~~~~~~~------------ 316 (365)
T 3get_A 256 -FNVSNLALKAAVAAMDD----DEFTEKTLENNFSQMELYKEFAKKH-NIKIIDSYTN-FITYFFDEK------------ 316 (365)
T ss_dssp -TCSCHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHHHHHHHHT-TCEECCCSSS-EEEEECSSS------------
T ss_pred -CCcCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHhC-CCEECCCCCe-EEEEECCCC------------
Confidence 45899999999999985 6889999999999999999999998 8988766655 589998752
Q ss_pred CHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHH
Q 012095 412 NSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGL 462 (471)
Q Consensus 412 ~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l 462 (471)
+..++.+.|.++ ||.+.||..|+ ++++|++++ ++++++++++.|++++
T Consensus 317 ~~~~~~~~l~~~-gi~v~~g~~~~-~~~iRis~~-~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 317 NSTDLSEKLLKK-GIIIRNLKSYG-LNAIRITIG-TSYENEKFFTEFDKIL 364 (365)
T ss_dssp CHHHHHHHHHTT-TEECEECGGGT-CSEEEEECC-CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHC-CEEEEECccCC-CCEEEEEcC-CHHHHHHHHHHHHHHh
Confidence 578899988765 99999999998 899999998 7899999999999876
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-48 Score=392.26 Aligned_cols=366 Identities=16% Similarity=0.142 Sum_probs=292.8
Q ss_pred ccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCC-CCCC-h---HHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHH
Q 012095 70 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP-DFDT-P---VLIAEAGINAIRE-GFTRYTPNAGTLELRSAICH 143 (471)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~-~~~~-p---~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~ 143 (471)
..+...++..+..+...... ...+++|+|+.|.+ ++.. | +.+.+++.+.... +..+|++..|.+++|+++++
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~--~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~ 82 (401)
T 7aat_A 5 SHVEMGPPDPILGVTEAFKR--DTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAE 82 (401)
T ss_dssp TTCCCCCCCHHHHHHHHHHH--CCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHH
T ss_pred hcCCCCCCChhHHHHHHHhh--CCCCCceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHH
Confidence 34555566655554433322 23345899999997 5543 2 4688888777653 56789888999999999999
Q ss_pred HHHHHhCCCCCCCcEEE--eCChHHHHHHHHHHhc---CCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCH
Q 012095 144 KLKEENGLSYTPDQILV--SNGAKQSILQAVLAVC---SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDP 218 (471)
Q Consensus 144 ~~~~~~g~~~~~~~i~i--t~G~~~al~~~~~~l~---~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~ 218 (471)
++.+.+|..+++++|++ |+|+++++..++..+. +|||.|++++|+|.+|...++..|++++.+|++.++++.+|+
T Consensus 83 ~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 162 (401)
T 7aat_A 83 LALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDF 162 (401)
T ss_dssp HHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECH
T ss_pred HhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCH
Confidence 99988887777999977 9999999998877664 899999999999999999999999999999987656788999
Q ss_pred HHHHhhhc---cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCC--ccccccCCCCCCc
Q 012095 219 KVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT--HTSFASLPGMWER 293 (471)
Q Consensus 219 e~l~~~l~---~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~--~~~~~~~~~~~~~ 293 (471)
+.+++.+. ++++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.+++.. ..++..+....++
T Consensus 163 ~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~-~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 241 (401)
T 7aat_A 163 TGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKR-NLLAYFDMAYQGFASGDINRDAWALRHFIEQGID 241 (401)
T ss_dssp HHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhC-CcEEEEccccccccCCCccccHHHHHHHHhcCCc
Confidence 97777664 5778889999999999999999999999999999 9999999999999876431 1222222233578
Q ss_pred eEEEecCCcccCccchhheeeEc---CHH----HHHHHHHHHhcccCCCChHHHHHHHHHHhccCCC---hHHHHHHHHH
Q 012095 294 TLTVNGFSKAFAMTGWRLGYIAG---PKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGYAG---GEVVSKMVKA 363 (471)
Q Consensus 294 ~i~~~S~SK~~g~~G~R~G~v~~---~~~----~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~---~~~~~~~~~~ 363 (471)
+++++||||.||++|+|+||+++ +++ +++.+.........+++.+.|.++..++.++... .+++++++++
T Consensus 242 ~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 321 (401)
T 7aat_A 242 VVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADR 321 (401)
T ss_dssp CEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876 665 5566666666677788888998888888752110 4567888999
Q ss_pred HHHHHHHHHHHhcCC---CCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcE
Q 012095 364 FRERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 440 (471)
Q Consensus 364 ~~~~r~~l~~~L~~~---~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~i 440 (471)
++++|+++.+.|.++ +++.+..|+++||+|++++ . +++..|++++||.+.|+ +
T Consensus 322 ~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~ll~~~gi~v~~~--------~ 377 (401)
T 7aat_A 322 IISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLK---------------P-EQVERLTKEFSIYMTKD--------G 377 (401)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCC---------------H-HHHHHHHHHHCEECCTT--------C
T ss_pred HHHHHHHHHHHHHhcCCCCCCceecCCcceEEecCCC---------------H-HHHHHHHHhCCEeccCC--------C
Confidence 999999999999886 2477788999999997653 2 44567777779999875 5
Q ss_pred EEEeec-CHHHHHHHHHHHHHHH
Q 012095 441 RISYAA-SLTTLQAAVERIKKGL 462 (471)
Q Consensus 441 Ris~~~-~~e~i~~~~~~l~~~l 462 (471)
|++++. ++++|++++++|++++
T Consensus 378 Ris~~~~~~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 378 RISVAGVASSNVGYLAHAIHQVT 400 (401)
T ss_dssp EEEGGGCCTTTHHHHHHHHHHHH
T ss_pred eEEeccCChhhHHHHHHHHHHHh
Confidence 999986 6677999999999876
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-48 Score=385.14 Aligned_cols=328 Identities=21% Similarity=0.332 Sum_probs=292.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH
Q 012095 115 EAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE 194 (471)
Q Consensus 115 ~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~ 194 (471)
+++.+++..+...|++..|..+||+++++++. .+++++|++|+|+++++..++++++++||+|++++|+|.++..
T Consensus 46 ~~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~-----~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~ 120 (375)
T 3op7_A 46 EDFYKKLQGTKLNYGWIEGSPAFKKSVSQLYT-----GVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYD 120 (375)
T ss_dssp HHHHHHHHTSCCSSCCTTCCHHHHHHHHTTSS-----SCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHH
T ss_pred HHHHHHHhcCCcCCCCCCChHHHHHHHHHHhc-----cCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHH
Confidence 45666677778899999999999999999862 2577899999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCcc
Q 012095 195 MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 274 (471)
Q Consensus 195 ~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~ 274 (471)
.++..|++++.++++.+++|.+|++++++++++++++|++++|+||||.+++.+++++|+++|++| |++||+||+|..+
T Consensus 121 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~-~~~li~De~~~~~ 199 (375)
T 3op7_A 121 IPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEV-GAYILSDEVYRSF 199 (375)
T ss_dssp HHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTT-TCEEEEECCSCCC
T ss_pred HHHHcCCEEEEEeccccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEEcccccc
Confidence 999999999999998777888999999999999999999999999999999999999999999999 9999999999998
Q ss_pred ccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCCh
Q 012095 275 IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG 354 (471)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~ 354 (471)
.+++ ...+... .+++++++||||.+|++|+|+||+++++++++.+......+.++++.+.|.++..+|.. .+
T Consensus 200 ~~~~--~~~~~~~---~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~ 271 (375)
T 3op7_A 200 SELD--VPSIIEV---YDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYTMICAGVFDDLVAQLALAH---YQ 271 (375)
T ss_dssp SSSC--CCCHHHH---CTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHT---HH
T ss_pred cccC--CCchhhh---cCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhc---cH
Confidence 7652 2222222 46789999999999999999999999999999999888878888899999999999885 46
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC
Q 012095 355 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 434 (471)
Q Consensus 355 ~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f 434 (471)
.++++.++.++++++.+.+.|++.+++.+..|.+++++|+.++.. .+..+++++|++++||.+.||..|
T Consensus 272 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ll~~~gi~v~~g~~~ 340 (375)
T 3op7_A 272 EILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVD-----------MPMEDFCLQLLQEHGVLLVPGNRF 340 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCS-----------SCHHHHHHHHHHHHCEECEEGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCC-----------CCHHHHHHHHHHhCCEEEeChhhh
Confidence 788999999999999999999988889988899999899988753 267889999877779999999999
Q ss_pred CCCCcEEEEeecCHHHHHHHHHHHHHHHHhhCC
Q 012095 435 GDDTCIRISYAASLTTLQAAVERIKKGLLTLRP 467 (471)
Q Consensus 435 ~~~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~ 467 (471)
+.++++|++++.+.+++++++++|.+++++++.
T Consensus 341 ~~~~~iRi~~~~~~~~i~~~l~~l~~~l~~~~~ 373 (375)
T 3op7_A 341 ERDGYVRLGFACEQETLIKGLEKLSQFLRRFDK 373 (375)
T ss_dssp TCTTEEEECCCSCHHHHHHHHHHHHHHHGGGC-
T ss_pred CCCCeEEEEecCCHHHHHHHHHHHHHHHHHHhh
Confidence 888999999999889999999999999988764
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-48 Score=395.57 Aligned_cols=356 Identities=15% Similarity=0.184 Sum_probs=289.9
Q ss_pred HHHHHHHhcCCCeEEcCCCCCC---CCChHHHHHHHHHHH--Hc--CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc
Q 012095 85 DQATALAQAGVSVIRLAAGEPD---FDTPVLIAEAGINAI--RE--GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQ 157 (471)
Q Consensus 85 ~~~~~~~~~g~~~i~l~~g~~~---~~~p~~v~~a~~~~~--~~--~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~ 157 (471)
..+.++...| .+|+|+.|+|+ +++|+.+.+++.+.+ .. ...+|++..|..+||+++++++ + +++++
T Consensus 23 ~~~~~l~~~~-~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~----~--~~~~~ 95 (422)
T 3d6k_A 23 AKYAELKAKN-LSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEAL----G--LPADL 95 (422)
T ss_dssp HHHHHHHHTT-CCEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHH----T--CCGGG
T ss_pred HHHHHHhccC-CeEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHh----C--CChhH
Confidence 3444555554 48999999998 777777888776542 12 2468999999999999999998 3 57899
Q ss_pred EEEeCChHHHH--HHHHHHhcCC------------CCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHh
Q 012095 158 ILVSNGAKQSI--LQAVLAVCSP------------GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLES 223 (471)
Q Consensus 158 i~it~G~~~al--~~~~~~l~~~------------gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~ 223 (471)
|++|+|+++++ ..++++++.+ +|+|++++|+|+.|...++..|++++.+|++.+ ++|++++++
T Consensus 96 i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~ 172 (422)
T 3d6k_A 96 VVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMTDE---GPDMGVVRE 172 (422)
T ss_dssp EEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT---EECHHHHHH
T ss_pred EEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEecCCCCC---CCCHHHHHH
Confidence 99999999987 6677777766 347999999999999999999999999998753 389999999
Q ss_pred hhcc-CCcEEE-EcCCCCCcccCCCHHHHHHHHHHHH-hCCCeEEEEccCCCc--cccCCCCccccccC---CCCCCceE
Q 012095 224 KLTE-KSRLLI-LCSPSNPTGSVYPKNLLDEIARIVA-KHPRLLVLSDEIYEH--IIYAPATHTSFASL---PGMWERTL 295 (471)
Q Consensus 224 ~l~~-~~~~i~-i~~p~NPtG~~~~~~~l~~i~~l~~-~~~~~~ii~De~y~~--~~~~~~~~~~~~~~---~~~~~~~i 295 (471)
++++ ++++|+ +++||||||.+++.+++++|+++|+ +| +++||+||+|.+ +.+++....++..+ ....++++
T Consensus 173 ~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 251 (422)
T 3d6k_A 173 LVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAP-DFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFW 251 (422)
T ss_dssp HHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSST-TCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEE
T ss_pred HHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhcc-CCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEE
Confidence 9975 789888 6999999999999999999999999 89 999999999986 43333223344222 22357899
Q ss_pred EEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHHH
Q 012095 296 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL-GYAGGEVVSKMVKAFRERRDFLVKS 374 (471)
Q Consensus 296 ~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~-~~~~~~~~~~~~~~~~~~r~~l~~~ 374 (471)
+++||||. +++|+|+||+++++++++.+.......+++++.++|.++.++|+. +. ..++++++++.|+++++.+.+.
T Consensus 252 ~~~S~SK~-~~~GlriG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~~l~~~ 329 (422)
T 3d6k_A 252 FMSSTSKI-THAGSGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAG-LKAHMLKHAASLAPKFERVLEI 329 (422)
T ss_dssp EEEESTTT-SCTTSSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcChhhh-cCcccceEEEEeCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcch-HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 679999999999999999999888877888999999999999975 21 1477888999999999988888
Q ss_pred hcC----CCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEEC-CCCCC-----CCCcEEEEe
Q 012095 375 FGE----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP-GDAFG-----DDTCIRISY 444 (471)
Q Consensus 375 L~~----~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~p-g~~f~-----~~~~iRis~ 444 (471)
|.+ ++++.+..|++|+|+|++++.. +...+.+.|. ++||.+.| |..|. .++++|||+
T Consensus 330 L~~~l~~~~~~~~~~p~~g~~~~~~~~~~------------~~~~~~~~l~-~~gV~v~~~g~~f~~~~~~~~~~iRis~ 396 (422)
T 3d6k_A 330 LDSRLSEYGVAKWTSPTGGYFISVDVVPG------------TASRVVELAK-EAGIALTGAGSSFPLHNDPNNENIRLAP 396 (422)
T ss_dssp HHHHHGGGTCEEECCCSBSSCEEEEESTT------------CHHHHHHHHH-HTTEECCCTTTTSGGGCCTTSCEEEECC
T ss_pred HHHhcCcCCceEEeCCCcceEEEEECCCC------------CHHHHHHHHH-HCCeEEEcCccccCCCCCCCCCeEEEec
Confidence 865 3346777889999999999742 4566766554 56999999 45563 257999999
Q ss_pred ec-CHHHHHHHHHHHHHHHHhhC
Q 012095 445 AA-SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 445 ~~-~~e~i~~~~~~l~~~l~~~~ 466 (471)
+. +++++++++++|+++++++.
T Consensus 397 ~~~~~e~i~~~~~~l~~~l~~~~ 419 (422)
T 3d6k_A 397 SLPPVAELEVAMDGFATCVLMAA 419 (422)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 95 99999999999999988754
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-47 Score=391.35 Aligned_cols=361 Identities=20% Similarity=0.338 Sum_probs=302.0
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCC------------CCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCcEEEe
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGF------------TRYTPNAGTLELRSAICHKLKEENG--LSYTPDQILVS 161 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~------------~~Y~~~~G~~~lr~~ia~~~~~~~g--~~~~~~~i~it 161 (471)
.+|+|+.+++.+. ++.+.+++.+...... .+|++..|..+||+++++++.+.+| +++++++|++|
T Consensus 39 ~~i~lg~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~ 117 (435)
T 3piu_A 39 GIIQMGLAENQLC-FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLT 117 (435)
T ss_dssp SBEECSSCCCCSS-HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEE
T ss_pred CeEEecccccccc-HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEc
Confidence 5899999888776 6667777765433211 4698999999999999999986655 55678999999
Q ss_pred CChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHH-HcCCEEEEecCCCCCCCcCCHHHHHhhhcc------CCcEEEE
Q 012095 162 NGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR-IADATPVILPTRISENFLLDPKVLESKLTE------KSRLLIL 234 (471)
Q Consensus 162 ~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~------~~~~i~i 234 (471)
+|+++++..++.+++++||.|++++|+|.++...+. ..|++++.++++.+++|.+|+++|++++++ ++++|++
T Consensus 118 ~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i 197 (435)
T 3piu_A 118 AGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLV 197 (435)
T ss_dssp EHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CChHHHHHHHHHHhcCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEE
Confidence 999999999999999999999999999999998888 789999999998777788999999999975 7899999
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCC---------CCceEEEecCCcccC
Q 012095 235 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM---------WERTLTVNGFSKAFA 305 (471)
Q Consensus 235 ~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~---------~~~~i~~~S~SK~~g 305 (471)
++|+||||.+++.+++++|+++|++| +++||+||+|..+.|++....++..+... .+++++++||||.+|
T Consensus 198 ~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g 276 (435)
T 3piu_A 198 TNPSNPLGTTMTRNELYLLLSFVEDK-GIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLG 276 (435)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSC
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccC
Confidence 99999999999999999999999999 99999999999988877554444443222 578999999999999
Q ss_pred ccchhheeeEc-CHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeee
Q 012095 306 MTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (471)
Q Consensus 306 ~~G~R~G~v~~-~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~ 384 (471)
++|+|+||+++ ++++++.+.+.... .+.+++.|.++.++|......++++++.+++++++++++.+.|.++ |+++.
T Consensus 277 ~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 353 (435)
T 3piu_A 277 LPGFRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GISCL 353 (435)
T ss_dssp CGGGCEEEEEESCHHHHHHHHHHGGG--SCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEEC
T ss_pred CCceeEEEEEeCCHHHHHHHHHHhhc--CCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccc
Confidence 99999999999 56788877766543 3478899999999888521113466788899999999999999998 89998
Q ss_pred CCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeec-CHHHHHHHHHHHHHH
Q 012095 385 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAA-SLTTLQAAVERIKKG 461 (471)
Q Consensus 385 ~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~-~~e~i~~~~~~l~~~ 461 (471)
.+.+|+|+|++++...... ...+..+++++|++++||.+.||..|+. ++++||+++. +++++++++++|+++
T Consensus 354 ~~~~g~~~~~~l~~~~~~~-----~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~e~i~~~l~~l~~~ 428 (435)
T 3piu_A 354 NGNAGLFCWVDMRHLLRSN-----TFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAF 428 (435)
T ss_dssp CCCSSSEEEEECGGGSSSS-----SHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCHHHHHHHHHHHHHH
T ss_pred CCCeeEEEEEEcccccccC-----CchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 9999999999997542100 0003468889998888999999998864 5799999998 999999999999999
Q ss_pred HHhhC
Q 012095 462 LLTLR 466 (471)
Q Consensus 462 l~~~~ 466 (471)
+++++
T Consensus 429 l~~~~ 433 (435)
T 3piu_A 429 VGEYY 433 (435)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 98765
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-47 Score=378.55 Aligned_cols=332 Identities=19% Similarity=0.282 Sum_probs=286.8
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHH
Q 012095 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 173 (471)
Q Consensus 94 g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~ 173 (471)
++++|+|+.|++++++|+.+.+++.+.+. ....| |..+..++|++++++++ +++++|++|+|+++++..+++
T Consensus 31 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~-~~~~y-~~~~~~~lr~~la~~~~------~~~~~v~~~~g~t~a~~~~~~ 102 (363)
T 3ffh_A 31 LTKITKLSSNENPLGTSKKVAAIQANSSV-ETEIY-PDGWASSLRKEVADFYQ------LEEEELIFTAGVDELIELLTR 102 (363)
T ss_dssp CSCCEECSSCSCTTCCCHHHHHHHHTCBS-CCCBC-----CHHHHHHHHHHHT------CCGGGEEEESSHHHHHHHHHH
T ss_pred CCceEEccCCCCCCCCCHHHHHHHHHHHH-HhhcC-CCcchHHHHHHHHHHhC------CChhhEEEeCCHHHHHHHHHH
Confidence 45799999999999999999999988653 34566 67889999999999973 467899999999999999999
Q ss_pred HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHH
Q 012095 174 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 253 (471)
Q Consensus 174 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i 253 (471)
+++++||+|++++|+|.++...++..|++++.+++++ ++.+|++++++++++++++|++++|+||||.+++.+++.+|
T Consensus 103 ~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~~~~l~~l 180 (363)
T 3ffh_A 103 VLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLLQ--DGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIELADIQAF 180 (363)
T ss_dssp HHCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEECCT--TSCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred HHccCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCC--CCCcCHHHHHHhcccCCCEEEEeCCCCCcCCCcCHHHHHHH
Confidence 9999999999999999999999999999999999874 57799999999999899999999999999999998888888
Q ss_pred HHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccC
Q 012095 254 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 333 (471)
Q Consensus 254 ~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~ 333 (471)
++.|++ |+++|+||+|.++.+ +. ..+........++++++.||||.+|++|+|+||+++++++++.+..... .+
T Consensus 181 ~~~~~~--~~~li~De~~~~~~~-~~-~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~--~~ 254 (363)
T 3ffh_A 181 LDRVPS--DVLVVLDEAYIEYVT-PQ-PEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKEIIRQLNIVRP--PF 254 (363)
T ss_dssp HTTSCT--TSEEEEECTTGGGCS-SC-CCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHHHHHHHHHTCC--SC
T ss_pred HHhCCC--CcEEEEeCchHhhcC-cc-ccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCHHHHHHHHHhCC--CC
Confidence 887754 799999999998877 32 2233333334689999999999999999999999999999999888665 45
Q ss_pred CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCH
Q 012095 334 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 413 (471)
Q Consensus 334 ~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~ 413 (471)
+++.+.|.++.++|+. .+++++.+++++++++++.+.|++++|+.+.++.+ +|+|++++. +.
T Consensus 255 ~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~-~~~~~~~~~-------------~~ 316 (363)
T 3ffh_A 255 NTTSIGQKLAIEAIKD----QAFIGECRTSNANGIKQYEAFAKRFEKVKLYPANG-NFVLIDLGI-------------EA 316 (363)
T ss_dssp CCBHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCS-SEEEEECSS-------------CH
T ss_pred CCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHhhCCCceECCCCC-eEEEEECCC-------------CH
Confidence 6899999999999984 68899999999999999999999866998876655 568998863 57
Q ss_pred HHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHH
Q 012095 414 ESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKG 461 (471)
Q Consensus 414 ~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~ 461 (471)
.++.+.|.++ ||.+.||..|+.++++|++++ +++++++++++|+++
T Consensus 317 ~~~~~~l~~~-gi~v~~g~~~~~~~~iRis~~-~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 317 GTIFSYLEKN-GYITRSGAALGFPTAVRITIG-KEEDNSAVIALLEKL 362 (363)
T ss_dssp HHHHHHHHHT-TEECEETTTTTCTTEEEEECC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CeEEEeCccCCCCCeEEEECC-CHHHHHHHHHHHHHh
Confidence 7899988875 999999999998999999998 889999999999875
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=396.48 Aligned_cols=370 Identities=13% Similarity=0.100 Sum_probs=285.7
Q ss_pred cccccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCC-CCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHH
Q 012095 65 DVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP-DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICH 143 (471)
Q Consensus 65 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~-~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~ 143 (471)
+-+++.++..++++++..+.+.+.. ...+++|+|+.|+| +++.|+.+.+++.++......+|++..|..+||+++++
T Consensus 13 ~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~i~l~~g~~~d~~~~~~v~~a~~~a~~~~~~~y~~~~g~~~lr~~ia~ 90 (409)
T 4eu1_A 13 EAQTQGPGSMGKPDPILGLGQDFRM--DPAKRKVNLSIGVYRDDADQPFVLECVKQATLGTNMDYAPVTGIASFVEEAQK 90 (409)
T ss_dssp --------------CHHHHHHHHHH--CCCSSCEECCCSSCCCTTSCCCCCHHHHTCCCCSCCCCCCTTCCHHHHHHHHH
T ss_pred hhhHhhcCCCCCCChHHHHHHHHhh--CCCcCceeeeeeEEECCCCCEeecHHHHhcCccccccCCCCCCcHHHHHHHHH
Confidence 4456778888999877666554433 34467999999997 88777777788777644456789999999999999999
Q ss_pred HHHHHhCCCCCCCcE--EEeCChHHHHHHH---HHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCH
Q 012095 144 KLKEENGLSYTPDQI--LVSNGAKQSILQA---VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDP 218 (471)
Q Consensus 144 ~~~~~~g~~~~~~~i--~it~G~~~al~~~---~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~ 218 (471)
++....+.++++++| ..|.|+++++..+ +++++++||.|++++|+|.+|...++..|++++.++++.+++|.+|+
T Consensus 91 ~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 170 (409)
T 4eu1_A 91 LCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNL 170 (409)
T ss_dssp HHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECH
T ss_pred HHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcH
Confidence 984222211236788 4589999988765 44567899999999999999999999999999999986566788999
Q ss_pred HHHHhhhcc---CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCC--CccccccCCCCCCc
Q 012095 219 KVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA--THTSFASLPGMWER 293 (471)
Q Consensus 219 e~l~~~l~~---~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~ 293 (471)
+++++++++ +++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.+++. ...++..+....++
T Consensus 171 ~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~ 249 (409)
T 4eu1_A 171 AGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRR-NHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPN 249 (409)
T ss_dssp HHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSC
T ss_pred HHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhC-CcEEEEeccccccccCCcccchHHHHHHHhhCCc
Confidence 999999862 455666799999999999999999999999999 999999999999988652 12233333233578
Q ss_pred eEEEecCCcccCccchhheee---EcCHH----HHHHHHHHHhcccCCCChHHHHHHHHHHhccCCC---hHHHHHHHHH
Q 012095 294 TLTVNGFSKAFAMTGWRLGYI---AGPKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGYAG---GEVVSKMVKA 363 (471)
Q Consensus 294 ~i~~~S~SK~~g~~G~R~G~v---~~~~~----~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~---~~~~~~~~~~ 363 (471)
+++++||||.+|++|+|+||+ +++++ +++.+.........+++.+.|.++..+|..+... .+++++++++
T Consensus 250 ~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 329 (409)
T 4eu1_A 250 LIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSR 329 (409)
T ss_dssp CEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 899999999999999999996 56777 7777777666667778999999999999852110 3447888999
Q ss_pred HHHHHHHHHHHhcCCCC----CeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCc
Q 012095 364 FRERRDFLVKSFGELEG----VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTC 439 (471)
Q Consensus 364 ~~~~r~~l~~~L~~~~g----~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~ 439 (471)
++++++++.+.|+++ | +.+..|+++||+|++++ .+++.+|++++||.+.||.
T Consensus 330 ~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~ll~~~gv~v~p~~------- 385 (409)
T 4eu1_A 330 IAEVRKRLVSELKAC-GSVHDWSHIERQVGMMAYTGLT----------------REQVELLRSEYHIYMTLNG------- 385 (409)
T ss_dssp HHHHHHHHHHHHHHT-TCCSCCHHHHHSCSSEEECCCC----------------HHHHHHHHHHHCEECCTTC-------
T ss_pred HHHHHHHHHHHHHhc-CCCCCcceecCCceEEEEeCCC----------------HHHHHHHHHcCCEEEcCCC-------
Confidence 999999999999987 4 77788999999996542 3567788877799999973
Q ss_pred EEEEeec-CHHHHHHHHHHHHHHH
Q 012095 440 IRISYAA-SLTTLQAAVERIKKGL 462 (471)
Q Consensus 440 iRis~~~-~~e~i~~~~~~l~~~l 462 (471)
||+++. +++++++++++|++++
T Consensus 386 -Ri~~~~~~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 386 -RAAVSGLNSTNVEYVSQAIHNVT 408 (409)
T ss_dssp -EEEGGGCCTTTHHHHHHHHHHHH
T ss_pred -EEEEEecCHhhHHHHHHHHHHHh
Confidence 999987 7788999999998876
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-48 Score=387.83 Aligned_cols=365 Identities=18% Similarity=0.160 Sum_probs=295.6
Q ss_pred ccccccCCChHHHHHHHHHHHHhcCCCeEEcCCC---CCCCCCh--HHHHHHHHH-HHHc-CCCCCCCCCCCHHHHHHHH
Q 012095 70 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAG---EPDFDTP--VLIAEAGIN-AIRE-GFTRYTPNAGTLELRSAIC 142 (471)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g---~~~~~~p--~~v~~a~~~-~~~~-~~~~Y~~~~G~~~lr~~ia 142 (471)
+++...+++.+..+...+.. ...+++|+|+.| +++.++| +.+.+++.+ ++.. +..+|++..|..++|++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la 80 (397)
T 3fsl_A 3 QKVDAYAGDPILTLMERFKE--DPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIA 80 (397)
T ss_dssp TTCCCCCCCHHHHHHHHHHT--CCCSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHH
T ss_pred ccCCCCCCCchhhHHHHHhc--CCCCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHH
Confidence 35666777777666554432 234579999999 5666554 899999998 8865 4568988899999999999
Q ss_pred HHHHHHhCCCCCCC--cEEEeCChHHHHHHHH--HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCH
Q 012095 143 HKLKEENGLSYTPD--QILVSNGAKQSILQAV--LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDP 218 (471)
Q Consensus 143 ~~~~~~~g~~~~~~--~i~it~G~~~al~~~~--~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~ 218 (471)
+++...++..++++ +|++|+|+++++..++ ..++++||+|++++|+|.+|...++..|++++.+++..++++.+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 160 (397)
T 3fsl_A 81 PLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRF 160 (397)
T ss_dssp HHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECH
T ss_pred HHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcH
Confidence 99976655444678 9999999999999985 4567999999999999999999999999999999985556788999
Q ss_pred HHHHhhhc---cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCC-CccccccCCCCCCce
Q 012095 219 KVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA-THTSFASLPGMWERT 294 (471)
Q Consensus 219 e~l~~~l~---~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~~ 294 (471)
++++++++ ++++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.+++. ...++..+....+++
T Consensus 161 ~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (397)
T 3fsl_A 161 NDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKAR-ELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPA 239 (397)
T ss_dssp HHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCE
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhC-CEEEEEecCchhhccCcccccHHHHHHHhcCCCE
Confidence 99999997 5678888999999999999999999999999999 999999999999988632 233444443346889
Q ss_pred EEEecCCcccCccchhheeeEc---CHHHHHHHHH----HHhcccCCCChHHHHHHHHHHhccCC---ChHHHHHHHHHH
Q 012095 295 LTVNGFSKAFAMTGWRLGYIAG---PKHFVAACNK----IQSQFTSGASSISQKAGVAALGLGYA---GGEVVSKMVKAF 364 (471)
Q Consensus 295 i~~~S~SK~~g~~G~R~G~v~~---~~~~i~~l~~----~~~~~~~~~~~~~q~aa~~~L~~~~~---~~~~~~~~~~~~ 364 (471)
++++||||.+|++|+|+||+++ ++++++.+.. .......+++.++|.++..+|..... ..++++++++++
T Consensus 240 i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 319 (397)
T 3fsl_A 240 LVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRI 319 (397)
T ss_dssp EEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred EEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999974 5566654432 22334556788999999888875211 046788999999
Q ss_pred HHHHHHHHHHhcCCC---CCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEE
Q 012095 365 RERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIR 441 (471)
Q Consensus 365 ~~~r~~l~~~L~~~~---g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iR 441 (471)
+++++++.+.|++++ |+.+..|++++|+|++++ ... +..+++++||.+.||. |
T Consensus 320 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~-~~~~l~~~gi~v~~g~--------R 375 (397)
T 3fsl_A 320 LAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLS---------------AAQ-VDRLREEFGVYLIASG--------R 375 (397)
T ss_dssp HHHHHHHHHHHHHHCTTSCCTHHHHCCSSEEECCCC---------------HHH-HHHHHHTTCEECCTTC--------E
T ss_pred HHHHHHHHHHHHhcCCCCCceeecCCceEEEecCCC---------------HHH-HHHHHHhCCEEECCCC--------e
Confidence 999999999999864 788888999999998763 333 4556667799999985 9
Q ss_pred EEeec-CHHHHHHHHHHHHHH
Q 012095 442 ISYAA-SLTTLQAAVERIKKG 461 (471)
Q Consensus 442 is~~~-~~e~i~~~~~~l~~~ 461 (471)
++++. ++++|++++++|+++
T Consensus 376 is~~~~~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 376 MCVAGLNTANVQRVAKAFAAV 396 (397)
T ss_dssp EEGGGCCTTTHHHHHHHHHHH
T ss_pred EEEEecCHhhHHHHHHHHHhh
Confidence 99998 888899999999876
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-47 Score=388.24 Aligned_cols=368 Identities=13% Similarity=0.137 Sum_probs=279.1
Q ss_pred cccccccc---CCChHHHHHHHHHHHHhcCCCeEEcCCCC---CCCC--ChHHHHHHHHHHHHcCCC-CCCCCCCCHHHH
Q 012095 68 LSPRVNAV---KPSKTVAITDQATALAQAGVSVIRLAAGE---PDFD--TPVLIAEAGINAIREGFT-RYTPNAGTLELR 138 (471)
Q Consensus 68 ~s~~~~~~---~~~~~~~~~~~~~~~~~~g~~~i~l~~g~---~~~~--~p~~v~~a~~~~~~~~~~-~Y~~~~G~~~lr 138 (471)
.+++..++ ++.++..+. ...++.+.++|||+.|. ++-. ..+.|++|....+..+.. .|.|..|+++||
T Consensus 17 ~~~~~~~v~~~p~d~i~~l~---~~~~~d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr 93 (420)
T 4h51_A 17 TAERWQKIQAQAPDVIFDLA---KRAAAAKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFI 93 (420)
T ss_dssp HHHHHHTCCCCCCCHHHHHH---HHHHHCCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHH
T ss_pred hhHHHhCCCCCCCChHHHHH---HHHhcCCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHH
Confidence 34444444 455555544 44445556799999994 3322 347899998888776554 599999999999
Q ss_pred HHHHHHHHHHhCCCCCCCc--EEEeCChHHHHHHHHHHh----cCCCCeEEEcCCCCCChHHHHHHcCCE-EEEecCCCC
Q 012095 139 SAICHKLKEENGLSYTPDQ--ILVSNGAKQSILQAVLAV----CSPGDEVIIPAPFWVSYPEMARIADAT-PVILPTRIS 211 (471)
Q Consensus 139 ~~ia~~~~~~~g~~~~~~~--i~it~G~~~al~~~~~~l----~~~gd~Vlv~~p~y~~~~~~~~~~G~~-~~~v~~~~~ 211 (471)
+++++++. |.....++ .+.|.|++.++...+..+ ++|||+|++++|+|++|..+++.+|++ +..++...+
T Consensus 94 ~aia~~~~---g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~ 170 (420)
T 4h51_A 94 DEAVKIIY---GNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDP 170 (420)
T ss_dssp HHHHHHHH---C---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEG
T ss_pred HHHHHHhc---CCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeEEEeeccccc
Confidence 99999974 33333333 456889988877665544 579999999999999999999999997 455666555
Q ss_pred CCCcCCHHHHHhhhc---cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccc--ccc
Q 012095 212 ENFLLDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS--FAS 286 (471)
Q Consensus 212 ~~~~ld~e~l~~~l~---~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~--~~~ 286 (471)
+++.+|.+.+.+.+. ++++++++++||||||.++++++|++|+++|+++ ++++|+||+|.+|.|++..... ...
T Consensus 171 ~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~-~~~~~~D~~Y~~~~~~~~~~~~~~~~~ 249 (420)
T 4h51_A 171 KTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAK-HHQVFFDSAYQGYASGSLDTDAYAARL 249 (420)
T ss_dssp GGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTTTTTSCHHHHTHHHHH
T ss_pred cccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc-CceEeeehhhhhhccCCcccchHHHHh
Confidence 678899999888774 4667788899999999999999999999999999 9999999999999887532222 122
Q ss_pred CCCCCCceEEEecCCcccCccchhheeeEcCHHH-------HHHHHHHHhcccCCCChHHHHHHHHHHhccCCC---hHH
Q 012095 287 LPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF-------VAACNKIQSQFTSGASSISQKAGVAALGLGYAG---GEV 356 (471)
Q Consensus 287 ~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~-------i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~---~~~ 356 (471)
.....++++++.||||.|+|+|||+||++++.+. ...+....+...++++..+|.++..+|.+.... +..
T Consensus 250 ~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~ 329 (420)
T 4h51_A 250 FARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAE 329 (420)
T ss_dssp HHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHhhCceEEEEeccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHH
Confidence 2233578999999999999999999999876443 334445566678889999999999999863221 244
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC--CC-CeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC
Q 012095 357 VSKMVKAFRERRDFLVKSFGEL--EG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 433 (471)
Q Consensus 357 ~~~~~~~~~~~r~~l~~~L~~~--~g-~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~ 433 (471)
++.++++|+++|+.+.+.|.++ ++ |.++.+++|||.|+.++ . +.++.| +++||+++||+
T Consensus 330 ~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~~gls---------------~-e~v~~L-~e~~Vy~~~~g- 391 (420)
T 4h51_A 330 LSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSFLGLS---------------K-AQCEYC-QNHNIFITVSG- 391 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEECCCC---------------H-HHHHHH-HHTTEECCTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEecCcC---------------H-HHHHHH-HhCCEEEcCCC-
Confidence 7788999999999999999886 22 55567889999987552 3 345655 56799999975
Q ss_pred CCCCCcEEEEeec-CHHHHHHHHHHHHHHHHhhCC
Q 012095 434 FGDDTCIRISYAA-SLTTLQAAVERIKKGLLTLRP 467 (471)
Q Consensus 434 f~~~~~iRis~~~-~~e~i~~~~~~l~~~l~~~~~ 467 (471)
|||++. ++++|+.++++|.+++++...
T Consensus 392 -------Ris~Agl~~~ni~~~a~aI~~vvr~i~r 419 (420)
T 4h51_A 392 -------RANMAGLTHETALMLAQTINDAVRNVNR 419 (420)
T ss_dssp -------EEEGGGCCHHHHHHHHHHHHHHHC----
T ss_pred -------EEEeccCCHHHHHHHHHHHHHHHHHhhc
Confidence 999998 999999999999999987654
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-48 Score=397.36 Aligned_cols=372 Identities=17% Similarity=0.150 Sum_probs=297.8
Q ss_pred ccccccccccCCChHHHHHHHHHHHHhcCC-CeEEcCCCCC-CCCCh----HHHHHHHHHHHH---cCCCCCCCCCCCHH
Q 012095 66 VSLSPRVNAVKPSKTVAITDQATALAQAGV-SVIRLAAGEP-DFDTP----VLIAEAGINAIR---EGFTRYTPNAGTLE 136 (471)
Q Consensus 66 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~-~~i~l~~g~~-~~~~p----~~v~~a~~~~~~---~~~~~Y~~~~G~~~ 136 (471)
+++..++...++.++..+... ++..+. .+|+|+.|.+ ++..+ +.+.+++.+... .+...|.+..|.++
T Consensus 22 ~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~ 98 (448)
T 3meb_A 22 MSVFSGFPASPPDAILNLTVL---YNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPL 98 (448)
T ss_dssp CCTTTTCCCCCCCTTHHHHHH---HHHCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHH
T ss_pred hhHHhcCCCCCCChHHHHHHH---HHhCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHH
Confidence 345567777777766665543 344444 4799999998 76543 556666554441 34678999999999
Q ss_pred HHHHHHHHHHHHhCCC---CCCCcEEE--eCChHHHHHH--HHHHhcCCCCeEEEcCCCCCChHHHHH----HcCCEEEE
Q 012095 137 LRSAICHKLKEENGLS---YTPDQILV--SNGAKQSILQ--AVLAVCSPGDEVIIPAPFWVSYPEMAR----IADATPVI 205 (471)
Q Consensus 137 lr~~ia~~~~~~~g~~---~~~~~i~i--t~G~~~al~~--~~~~l~~~gd~Vlv~~p~y~~~~~~~~----~~G~~~~~ 205 (471)
+|+++++++ +|.+ +++++|++ |+|+++++.. .+..++.+||+|++++|+|.+|...++ ..|++++.
T Consensus 99 lr~~ia~~l---~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~ 175 (448)
T 3meb_A 99 FLEAAQFLM---FGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKE 175 (448)
T ss_dssp HHHHHHHHH---HCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEE
T ss_pred HHHHHHHHh---cCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEE
Confidence 999999998 3543 22689999 9999999987 456678899999999999999999999 99999999
Q ss_pred ecCCCCC-CCcCCHHHHHhhhcc---CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCC--
Q 012095 206 LPTRISE-NFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA-- 279 (471)
Q Consensus 206 v~~~~~~-~~~ld~e~l~~~l~~---~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~-- 279 (471)
+|+..++ +|.+|++++++++++ +++++++++||||||.+++.+++++|+++|++| ++++|+||+|.++.+++.
T Consensus 176 ~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~-~~~li~Deay~~~~~~~~~~ 254 (448)
T 3meb_A 176 YTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEK-KHIAFFDSAYQGFATGSFEA 254 (448)
T ss_dssp ECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTTTSSSCHHH
T ss_pred EeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHC-CCEEEEecccccccCCCccc
Confidence 9984444 688999999999974 567778899999999999999999999999999 999999999999887651
Q ss_pred CccccccCCCCCCceEEEecCCcccCccchhheee--Ec--------C-H----HHHHHHHHHHhcccCCCChHHHHHHH
Q 012095 280 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYI--AG--------P-K----HFVAACNKIQSQFTSGASSISQKAGV 344 (471)
Q Consensus 280 ~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v--~~--------~-~----~~i~~l~~~~~~~~~~~~~~~q~aa~ 344 (471)
...++..+....+++++++||||.||++|+|+||+ ++ + + ++++.+....+....+++.++|.++.
T Consensus 255 ~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~ 334 (448)
T 3meb_A 255 DAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQ 334 (448)
T ss_dssp HTHHHHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred CchhHHHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHH
Confidence 11223322223578999999999999999999998 66 4 4 67777777777777789999999999
Q ss_pred HHHhccCCCh---HHHHHHHHHHHHHHHHHHHHhcCC--CC------CeeeCCCcceEEeEecCCccCCcccCCCCCCCH
Q 012095 345 AALGLGYAGG---EVVSKMVKAFRERRDFLVKSFGEL--EG------VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 413 (471)
Q Consensus 345 ~~L~~~~~~~---~~~~~~~~~~~~~r~~l~~~L~~~--~g------~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~ 413 (471)
.+|....... +++++++++++++|+++.+.|+++ +| +.+..|+++||+|+.++
T Consensus 335 ~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------------- 398 (448)
T 3meb_A 335 VIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLT---------------- 398 (448)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCCC----------------
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCCC----------------
Confidence 9997521111 447888999999999999999886 56 77778999999997653
Q ss_pred HHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec-CHHHHHHHHHHHHHHHHhhCC
Q 012095 414 ESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGLLTLRP 467 (471)
Q Consensus 414 ~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~-~~e~i~~~~~~l~~~l~~~~~ 467 (471)
.+++..|++++||++.||+ .|||++. ++++|++++++|+++++++..
T Consensus 399 ~~~~~~ll~~~gV~v~~G~-------gRis~a~~~~~~i~~~~~~l~~~l~~~~~ 446 (448)
T 3meb_A 399 PEHVDYLKEKWSIYLVKAG-------GRMSMCGLTESNCDYVAEAIHDAVTKLPF 446 (448)
T ss_dssp HHHHHHHHHHHCEEECSGG-------GEEEGGGCCTTTHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhCCEEEeCCC-------cEEEEecCCHHHHHHHHHHHHHHHHhccc
Confidence 3677778777899999986 2999998 888899999999999986553
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-47 Score=376.49 Aligned_cols=336 Identities=18% Similarity=0.244 Sum_probs=291.9
Q ss_pred cCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHH
Q 012095 93 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 172 (471)
Q Consensus 93 ~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~ 172 (471)
.|+++|+|+.|++++++|+.+.+++.+++.+ ..+| |..+..++|+++++++ | +++++|++|+|+++++..++
T Consensus 14 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~y-~~~~~~~l~~~la~~~----~--~~~~~i~~~~g~~~a~~~~~ 85 (354)
T 3ly1_A 14 STDNPIRINFNENPLGMSPKAQAAARDAVVK-ANRY-AKNEILMLGNKLAAHH----Q--VEAPSILLTAGSSEGIRAAI 85 (354)
T ss_dssp CSSSCEECSSCCCSSCCCHHHHHHHHHTGGG-TTSC-CHHHHHHHHHHHHHHT----T--SCGGGEEEESHHHHHHHHHH
T ss_pred CCCceEEccCCCCCCCCCHHHHHHHHHHHhh-CcCC-CCCchHHHHHHHHHHh----C--CChHHEEEeCChHHHHHHHH
Confidence 4678999999999999999999999988764 5678 6678889999999986 3 46789999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc--cCCcEEEEcCCCCCcccCCCHHHH
Q 012095 173 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT--EKSRLLILCSPSNPTGSVYPKNLL 250 (471)
Q Consensus 173 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~--~~~~~i~i~~p~NPtG~~~~~~~l 250 (471)
++++++||+|+++.|+|.++...++..|++++.++++. ++.+|+++++++++ +++++|++++|+||||.+++.+++
T Consensus 86 ~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l 163 (354)
T 3ly1_A 86 EAYASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKMLD--NWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVI 163 (354)
T ss_dssp HHHCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECCCT--TSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHHH
T ss_pred HHHhCCCCeEEECCCCchHHHHHHHHcCCEEEEecCCC--CCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHHH
Confidence 99999999999999999999999999999999999864 47799999999998 789999999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhc
Q 012095 251 DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ 330 (471)
Q Consensus 251 ~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~ 330 (471)
++|+++| +| ++++|+||+|.++.+++.....+...+...+++++++||||.+|++|+|+||+++++++++.+......
T Consensus 164 ~~l~~~~-~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~ 241 (354)
T 3ly1_A 164 EPWIASK-PA-NTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVIALMGRYVAG 241 (354)
T ss_dssp HHHHHTC-CT-TEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECCHHHHHHHGGGTTC
T ss_pred HHHHHhC-CC-CeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecCHHHHHHHHHhcCC
Confidence 9999999 88 999999999999887654322222222222789999999999999999999999999999998877655
Q ss_pred ccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCC
Q 012095 331 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI 410 (471)
Q Consensus 331 ~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~ 410 (471)
++++.+.|.++.++|+. .+++++.+++++++++++.+.|+++ |+.+.++. +.|+|++++.
T Consensus 242 --~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~-~~~~~~~~~~------------ 301 (354)
T 3ly1_A 242 --EKINFSGVDAALASMND----SAFITYSKKSNDVSRQILLKALEDL-KLPYLPSE-GNFVFHQLVV------------ 301 (354)
T ss_dssp --SCCCHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCC-SSEEEEECSS------------
T ss_pred --CCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHC-CCeECCCC-ceEEEEECCC------------
Confidence 57899999999999985 5889999999999999999999988 88877555 5568999873
Q ss_pred CCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012095 411 ENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 411 ~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~~ 464 (471)
+..++.+.|.++ ||.+. |..++.++++||+++ +++++++++++|++++++
T Consensus 302 -~~~~~~~~l~~~-gi~v~-g~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 302 -PLKDYQTHMADA-GVLIG-RAFPPADNWCRISLG-TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp -CHHHHHHHHHHT-TEECC-CCCTTCTTEEEEECC-CHHHHHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHC-CEEEe-ecCCCCCCEEEEEcC-CHHHHHHHHHHHHHHHHh
Confidence 577899988865 99998 876677899999988 778999999999999875
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-47 Score=385.99 Aligned_cols=352 Identities=19% Similarity=0.311 Sum_probs=284.8
Q ss_pred CCCeEEcCCCCCCCCCh--HHHHHHHHHHHHcCC-----CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHH
Q 012095 94 GVSVIRLAAGEPDFDTP--VLIAEAGINAIREGF-----TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (471)
Q Consensus 94 g~~~i~l~~g~~~~~~p--~~v~~a~~~~~~~~~-----~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~ 166 (471)
++++|+|+.|.|+..++ +.+.+++.+.+.+.. .+|++..|..+||+++++++.+.+|+++++++|++|+|+++
T Consensus 30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~ 109 (417)
T 3g7q_A 30 TPGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQS 109 (417)
T ss_dssp --CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHH
T ss_pred CCCceEecCcCCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHH
Confidence 46799999999988553 567788877765432 47999999999999999999999999899999999999999
Q ss_pred HHHHHHHHhcCCCC-----eEEEc-CCCCCChHHHHHH------cCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEE
Q 012095 167 SILQAVLAVCSPGD-----EVIIP-APFWVSYPEMARI------ADATPVILPTRISENFLLDPKVLESKLTEKSRLLIL 234 (471)
Q Consensus 167 al~~~~~~l~~~gd-----~Vlv~-~p~y~~~~~~~~~------~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i 234 (471)
++..++++++++|| .|+++ +|+|+.|...+.. .+..+..++.+. .+|.+|+++++ +++++++|++
T Consensus 110 al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~l~--~~~~~~~v~~ 186 (417)
T 3g7q_A 110 AFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQ-FKYHVDFEHLH--IGEETGMICV 186 (417)
T ss_dssp HHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGE-EEEECCGGGCC--CCTTEEEEEE
T ss_pred HHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcc-cccccCHHHhc--cccCceEEEE
Confidence 99999999999987 89997 9999988866532 233444554321 24678999998 6778999999
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccC-CCCCCceEEEecCCcccCccchhhee
Q 012095 235 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGY 313 (471)
Q Consensus 235 ~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~-~~~~~~~i~~~S~SK~~g~~G~R~G~ 313 (471)
++||||||.+++.+++++|+++|++| +++||+||+|..+..+ . .+... +...++++++.|||| ++++|+|+||
T Consensus 187 ~~p~NptG~~~~~~~~~~l~~~a~~~-~~~li~De~~~~~~~~-~---~~~~~~~~~~~~~i~~~s~sK-~~~~G~r~G~ 260 (417)
T 3g7q_A 187 SRPTNPTGNVITDEELMKLDRLANQH-NIPLVIDNAYGVPFPG-I---IFSEARPLWNPNIILCMSLSK-LGLPGSRCGI 260 (417)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHT-TCCEEEECTTCTTTTC-C---BCSCCCCCCCTTEEEEEESGG-GTCTTSCCEE
T ss_pred CCCCCCCCCccCHHHHHHHHHHHHHc-CCEEEEeCCCcccccc-c---cccccccCCCCCEEEEEechh-ccCCCcceEE
Confidence 99999999999999999999999999 9999999999863211 1 11111 123578999999999 5789999999
Q ss_pred eEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHH-HHHHHHHHHHHHHHHhcC-CC--CCeeeCCCcc
Q 012095 314 IAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK-MVKAFRERRDFLVKSFGE-LE--GVKMSEPQGA 389 (471)
Q Consensus 314 v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~-~~~~~~~~r~~l~~~L~~-~~--g~~~~~p~~g 389 (471)
+++++++++.+......++++++++.|.++.++++.... ..++.+ +++.|+++++.+.+.|.+ ++ |+.+..|++|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g 339 (417)
T 3g7q_A 261 IIANDKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDL-LRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGA 339 (417)
T ss_dssp EECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCH-HHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCBS
T ss_pred EEeCHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcch-HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCcc
Confidence 999999999999988888888999999999999986432 344444 778899999999888876 55 4788889999
Q ss_pred eEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---------CCcEEEEeecCHHHHHHHHHHHHH
Q 012095 390 FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---------DTCIRISYAASLTTLQAAVERIKK 460 (471)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~---------~~~iRis~~~~~e~i~~~~~~l~~ 460 (471)
+|+|++++... .+..++++.|.+ +||.+.||+.|+. ++++||+++.+++++++++++|++
T Consensus 340 ~~~~~~~~~~~----------~~~~~l~~~l~~-~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~~~~~i~~~~~~l~~ 408 (417)
T 3g7q_A 340 IFLWLWFKDLP----------ITTELLYQRLKA-RGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVPEPDKIEAGVKILAE 408 (417)
T ss_dssp SEEEEECTTCS----------SCHHHHHHHHHH-TTEECEEGGGGCTTBSSCCGGGGGEEEEESCSCHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCC----------CCHHHHHHHHHH-CCEEEECchhhCCCCccccccCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 99999998520 267889998865 5999999998864 468999999999999999999999
Q ss_pred HHHhhC
Q 012095 461 GLLTLR 466 (471)
Q Consensus 461 ~l~~~~ 466 (471)
+++++.
T Consensus 409 ~l~~~~ 414 (417)
T 3g7q_A 409 EIERAW 414 (417)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998753
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-51 Score=413.34 Aligned_cols=352 Identities=24% Similarity=0.375 Sum_probs=307.4
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 175 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l 175 (471)
++|+|+.|++++++|+.+.+++.+++..+..+|++. ..++|+++++++.+.+|+++++++|++|+|+++++..+++++
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~ 109 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIHDYAEQLVYGYTYA--SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAF 109 (392)
Confidence 799999999999999999999999887666778654 889999999999988887778899999999999999999999
Q ss_pred cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCC-CCCcCCHHHHHhhhc-cCCcEEEEcCCCCCcccCCCHHHHHHH
Q 012095 176 CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS-ENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEI 253 (471)
Q Consensus 176 ~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~ld~e~l~~~l~-~~~~~i~i~~p~NPtG~~~~~~~l~~i 253 (471)
+++||+|+++.|+|.++...++..|++++.++++.+ ++|.+|+++++++++ +++++|++++|+||||.+++.+++++|
T Consensus 110 ~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~l 189 (392)
T 3b1d_A 110 TKEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQI 189 (392)
Confidence 999999999999999999999999999999998533 357899999999987 678999999999999999999999999
Q ss_pred HHHHHhCCCeEEEEccCCCccccCCCCccccccCCCC-CCceEEEecCCcccCccchhheeeEcCH-HHHHHHHHHHhcc
Q 012095 254 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAACNKIQSQF 331 (471)
Q Consensus 254 ~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~g~~G~R~G~v~~~~-~~i~~l~~~~~~~ 331 (471)
+++|++| +++||+||+|.++.+++....++..+... .+++++++||||.+|++|+|+||+++++ ++++.+......+
T Consensus 190 ~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~ 268 (392)
T 3b1d_A 190 GHLCQKH-HVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVN 268 (392)
Confidence 9999999 99999999999998876555555555432 5789999999999999999999999875 5999888876665
Q ss_pred c-CCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC-CCCCeeeCCCcceEEeEecCCccCCcccCCCC
Q 012095 332 T-SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK 409 (471)
Q Consensus 332 ~-~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~ 409 (471)
+ .++++++|.++.++|+. ..++++++++.++++++.+.+.|++ ++|+.+..|.++|++|++++.. +
T Consensus 269 ~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~-~-------- 336 (392)
T 3b1d_A 269 NHHEVSSLGYIATETAYRY---GKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQGTYLIWLDFSDY-G-------- 336 (392)
Confidence 4 35789999999999875 3578899999999999999999998 7889988999999999998742 0
Q ss_pred CCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012095 410 IENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLL 463 (471)
Q Consensus 410 ~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~l~ 463 (471)
.+..+++++|++++||.+.||..|+. ++++||+++.++++|++++++|+++++
T Consensus 337 -~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 337 -LTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAAPKSLVEEICKRIVCCLP 391 (392)
Confidence 14667888887666999999999873 579999999988999999999998875
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-47 Score=375.69 Aligned_cols=323 Identities=21% Similarity=0.339 Sum_probs=273.8
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHH
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~ 174 (471)
.++|+|+.|++++++|+.+ + + ....+|++ .+..+||+++++++ | +++++|++|+|+++++..++++
T Consensus 29 ~~~i~l~~~~~~~~~~~~v--a----~-~~~~~Y~~-~~~~~lr~~la~~~----~--~~~~~v~~~~G~~~ai~~~~~~ 94 (356)
T 1fg7_A 29 NGDVWLNANEYPTAVEFQL--T----Q-QTLNRYPE-CQPKAVIENYAQYA----G--VKPEQVLVSRGADEGIELLIRA 94 (356)
T ss_dssp TCSEECSSCCCSSCCCCCC--C----C-CCTTSCCC-SSCHHHHHHHHHHH----T--SCGGGEEEESHHHHHHHHHHHH
T ss_pred CceEEeeCCCCCCCCCHhH--h----h-hhhccCCC-ccHHHHHHHHHHHh----C--CChHHEEEcCCHHHHHHHHHHH
Confidence 3589999999999887766 1 2 34578854 56899999999997 3 4678999999999999999999
Q ss_pred hcCCC-CeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHH
Q 012095 175 VCSPG-DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 253 (471)
Q Consensus 175 l~~~g-d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i 253 (471)
++++| |+|++++|+|++|...++..|++++.+|++ ++|.+|+++++++++ ++++|++++||||||.+++.+++++|
T Consensus 95 ~~~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~~l 171 (356)
T 1fg7_A 95 FCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTL--DNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTL 171 (356)
T ss_dssp HCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCC--TTSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred HhCCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCC--CCCCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHHHH
Confidence 99999 999999999999999999999999999986 457799999999988 89999999999999999999999999
Q ss_pred HHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccC
Q 012095 254 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 333 (471)
Q Consensus 254 ~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~ 333 (471)
+++|+ + +++||+||+|.++.. ..++..+....+++++++||||.||++|+|+||+++++++++.+......+
T Consensus 172 ~~~~~-~-~~~li~De~~~~~~~----~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~-- 243 (356)
T 1fg7_A 172 LELTR-G-KAIVVADEAYIEFCP----QASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPY-- 243 (356)
T ss_dssp HHHHT-T-TCEEEEECTTGGGSG----GGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHHSCSS--
T ss_pred HHhCC-C-CCEEEEEccchhhcC----CCcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCHHHHHHHHHhcCCC--
Confidence 99999 8 999999999998652 123334433457899999999999999999999999999999998876544
Q ss_pred CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCH
Q 012095 334 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 413 (471)
Q Consensus 334 ~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~ 413 (471)
++++++|.++.++|++.. .+|+++.+++++++++++.+.|++++++....|.+++|+|++++ +.
T Consensus 244 ~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~--------------~~ 307 (356)
T 1fg7_A 244 PLSTPVADIAAQALSPQG--IVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK--------------AS 307 (356)
T ss_dssp CSCHHHHHHHHHHTSHHH--HHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET--------------TH
T ss_pred CCCHHHHHHHHHHhcCcc--HHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECC--------------CH
Confidence 689999999999987410 13488999999999999999999886543445667888999986 46
Q ss_pred HHHHHHHHHcCCEEEEC-CCCCCCCCcEEEEeecCHHHHHHHHHHHHH
Q 012095 414 ESLCRYLLDKAQVALVP-GDAFGDDTCIRISYAASLTTLQAAVERIKK 460 (471)
Q Consensus 414 ~~l~~~Ll~~~gV~v~p-g~~f~~~~~iRis~~~~~e~i~~~~~~l~~ 460 (471)
.++.++|.+ +||.+.| |..|+.++++|++++ +++++++++++|++
T Consensus 308 ~~l~~~L~~-~gI~v~~~g~~~~~~~~iRis~~-~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 308 SAVFKSLWD-QGIILRDQNKQPSLSGCLRITVG-TREESQRVIDALRA 353 (356)
T ss_dssp HHHHHHHHH-TTEECEECTTSTTCTTEEEEECC-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-CCEEEEECCCCCCCCCeEEEEeC-CHHHHHHHHHHHHh
Confidence 788998854 5999999 988887789999998 46889999888765
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-47 Score=387.71 Aligned_cols=371 Identities=16% Similarity=0.148 Sum_probs=301.8
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCC-C----CCChHHHHHHHHHHHHc--CCCCCCCCCCCHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP-D----FDTPVLIAEAGINAIRE--GFTRYTPNAGTLELRSA 140 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~-~----~~~p~~v~~a~~~~~~~--~~~~Y~~~~G~~~lr~~ 140 (471)
+++++..++++++..+...+.+ ..|+++|+|+.|.+ + ..+++.+.+++.+.+.+ ...+|++..|..+||++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ 82 (412)
T 1ajs_A 5 VFAEVPQAQPVLVFKLIADFRE--DPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTC 82 (412)
T ss_dssp TTTTCCCCCCCHHHHHHHHHHT--CCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHH
T ss_pred hhhhCcccCCchHHHHHHHHhh--cCCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHH
Confidence 4567788888888887766553 24678999999995 3 23468899999888732 45679899999999999
Q ss_pred HHHHHHHHhCCCCCCCcEEE--eCChHHHHHHHHH--HhcCCC-----CeEEEcCCCCCChHHHHHHcCCE-EEEecCCC
Q 012095 141 ICHKLKEENGLSYTPDQILV--SNGAKQSILQAVL--AVCSPG-----DEVIIPAPFWVSYPEMARIADAT-PVILPTRI 210 (471)
Q Consensus 141 ia~~~~~~~g~~~~~~~i~i--t~G~~~al~~~~~--~l~~~g-----d~Vlv~~p~y~~~~~~~~~~G~~-~~~v~~~~ 210 (471)
+++++...+|..+++++|++ |+|+++++..+++ .++++| |+|++++|+|++|...++..|++ ++.++++.
T Consensus 83 la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~ 162 (412)
T 1ajs_A 83 ASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWD 162 (412)
T ss_dssp HHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEE
T ss_pred HHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeec
Confidence 99999766665557889999 9999999998854 456899 99999999999999999999999 99999865
Q ss_pred CCCCcCCHHHHHhhhcc---CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCC--CCccccc
Q 012095 211 SENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP--ATHTSFA 285 (471)
Q Consensus 211 ~~~~~ld~e~l~~~l~~---~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~--~~~~~~~ 285 (471)
+++|.+|++++++++++ +++++++++||||||.+++.+++++|+++|++| |++||+||+|.++.+++ ....++.
T Consensus 163 ~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~~~ 241 (412)
T 1ajs_A 163 TEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRR-FLFPFFDSAYQGFASGNLEKDAWAIR 241 (412)
T ss_dssp TTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTTTTTSCHHHHTHHHH
T ss_pred CCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEcccccccCCcccccchHHH
Confidence 56788999999999865 567788899999999999999999999999999 99999999999988764 1222333
Q ss_pred cCCCCCCceEEEecCCcccCccchhheeeEc---CHH----HHHHHHHHHhcccCCCChHHHHHHHHHHhccCC---ChH
Q 012095 286 SLPGMWERTLTVNGFSKAFAMTGWRLGYIAG---PKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGYA---GGE 355 (471)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~---~~~----~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~---~~~ 355 (471)
.+....++++++.||||.+|++|+|+||+++ +++ +++.+.........+++.++|.++.++|+.... ..+
T Consensus 242 ~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 321 (412)
T 1ajs_A 242 YFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTG 321 (412)
T ss_dssp HHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHhccCCcEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHH
Confidence 3332357899999999999988999999999 887 455555544444555799999999999986210 034
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC---CCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC
Q 012095 356 VVSKMVKAFRERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD 432 (471)
Q Consensus 356 ~~~~~~~~~~~~r~~l~~~L~~~~---g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~ 432 (471)
++++++++++++++++.+.|+++. ++++..|.+++|+|+++ + .+++..+++++||.+.|+
T Consensus 322 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~~~l~~~gv~v~~~- 384 (412)
T 1ajs_A 322 NVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGL---------------N-PKQVEYLINQKHIYLLPS- 384 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCC---------------C-HHHHHHHHHTTCEECCTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCC---------------C-HHHHHHHHHhCCEEecCC-
Confidence 788999999999999999999873 48887889999999755 2 345666777779999984
Q ss_pred CCCCCCcEEEEeec-CHHHHHHHHHHHHHHHHhh
Q 012095 433 AFGDDTCIRISYAA-SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 433 ~f~~~~~iRis~~~-~~e~i~~~~~~l~~~l~~~ 465 (471)
+|++++. +++++++++++|+++++++
T Consensus 385 -------~Ris~~~~~~~~i~~~~~~l~~~l~~~ 411 (412)
T 1ajs_A 385 -------GRINMCGLTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp -------SEEEGGGCCTTTHHHHHHHHHHHHHHC
T ss_pred -------cEEEeeeCCHHHHHHHHHHHHHHHHhc
Confidence 5999996 8899999999999998764
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-47 Score=386.65 Aligned_cols=382 Identities=16% Similarity=0.240 Sum_probs=304.5
Q ss_pred cccccccccC-CChHHHHHHHHHHHHhcCCCeE-EcCCCCCCCCCh--HHHHHHHHHHHHc-------C-----CCCCCC
Q 012095 67 SLSPRVNAVK-PSKTVAITDQATALAQAGVSVI-RLAAGEPDFDTP--VLIAEAGINAIRE-------G-----FTRYTP 130 (471)
Q Consensus 67 ~~s~~~~~~~-~~~~~~~~~~~~~~~~~g~~~i-~l~~g~~~~~~p--~~v~~a~~~~~~~-------~-----~~~Y~~ 130 (471)
.+|+....+. ++.+..++....+.. ..+++| +|+.|.|+.+++ +.+.+++.+.+.+ . ..+|++
T Consensus 3 ~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 81 (444)
T 3if2_A 3 KFSKFGQKFTQPTGISQLMDDLGDAL-KSDQPVNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSN 81 (444)
T ss_dssp CCCHHHHHHHSCCHHHHHHHHHHHHH-HSSSCCEECSCCCCCCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCC
T ss_pred CcchhhhhccCchhHHHHHHHHHhhh-cCchhhhccCCCCCCcccchHHHHHHHHHHHHhccccccccchhhhhhhccCC
Confidence 3455444443 455655554443332 236799 999999988543 5567777776654 2 257999
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCC--------------eEEEc-CCCCCChHHH
Q 012095 131 NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGD--------------EVIIP-APFWVSYPEM 195 (471)
Q Consensus 131 ~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd--------------~Vlv~-~p~y~~~~~~ 195 (471)
..|..+||+++++++.+.+|+.+++++|++|+|+++++..++++++++|| +|+++ +|+|+.|...
T Consensus 82 ~~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~ 161 (444)
T 3if2_A 82 PQGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDV 161 (444)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTC
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhc
Confidence 99999999999999999999989999999999999999999999999998 78876 9999998763
Q ss_pred ------HHHcCCEEEEecCCCCC---CCcCCHHHHHhh---hccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCe
Q 012095 196 ------ARIADATPVILPTRISE---NFLLDPKVLESK---LTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL 263 (471)
Q Consensus 196 ------~~~~G~~~~~v~~~~~~---~~~ld~e~l~~~---l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~ 263 (471)
+...|..++.++++.++ +|.+|+++|+++ +++++++|++++||||||.+++.+++++|+++|++| ++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~-~~ 240 (444)
T 3if2_A 162 HVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRY-DI 240 (444)
T ss_dssp CSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TC
T ss_pred ccccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHC-CC
Confidence 35568888888876422 367999999998 677899999999999999999999999999999999 99
Q ss_pred EEEEccCCCccccCCCCccccccC-CCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHH
Q 012095 264 LVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKA 342 (471)
Q Consensus 264 ~ii~De~y~~~~~~~~~~~~~~~~-~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~a 342 (471)
+||+||+|..+... . .+... ....++++++.||||. +++|+|+||+++++++++.+.......+++++++.|.+
T Consensus 241 ~li~De~~~~~~~~-~---~~~~~~~~~~~~~i~~~S~sK~-~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a 315 (444)
T 3if2_A 241 PLIIDNAYGMPFPN-I---IYSDAHLNWDNNTILCFSLSKI-GLPGMRTGIIVADAKVIEAVSAMNAVVNLAPTRFGAAI 315 (444)
T ss_dssp CEEEECTTCTTTTC-C---BCSCCCCCCCTTEEEEEESTTT-TCGGGCCEEEECCHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred EEEEECCCCCcccc-c---ccccccccCCCCEEEEechhhc-cCCCCceEEEEECHHHHHHHHHHHHhccCCCChHHHHH
Confidence 99999999863211 1 11111 1235789999999997 78999999999999999999988887788899999999
Q ss_pred HHHHHhccCCChHHHHH-HHHHHHHHHHHHHHHhcC-CC--CCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHH
Q 012095 343 GVAALGLGYAGGEVVSK-MVKAFRERRDFLVKSFGE-LE--GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCR 418 (471)
Q Consensus 343 a~~~L~~~~~~~~~~~~-~~~~~~~~r~~l~~~L~~-~~--g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 418 (471)
+..++..... ..+..+ +++.|+++++.+.+.|.+ ++ ++.+..|.+++|+|++++... .+..++++
T Consensus 316 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~----------~~~~~l~~ 384 (444)
T 3if2_A 316 ATPLVANDRI-KQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLP----------ISTLDLYE 384 (444)
T ss_dssp HHHHHHTSHH-HHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCS----------SCHHHHHH
T ss_pred HHHHHHcCch-hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCC----------CCHHHHHH
Confidence 9999986322 233444 777889999988888766 44 467778899999999998520 26788998
Q ss_pred HHHHcCCEEEECCCCCCCC----------CcEEEEeecCHHHHHHHHHHHHHHHHhhCC
Q 012095 419 YLLDKAQVALVPGDAFGDD----------TCIRISYAASLTTLQAAVERIKKGLLTLRP 467 (471)
Q Consensus 419 ~Ll~~~gV~v~pg~~f~~~----------~~iRis~~~~~e~i~~~~~~l~~~l~~~~~ 467 (471)
.|.+ +||.+.||+.|... ++|||+++.++++|++++++|.++++++..
T Consensus 385 ~l~~-~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~~~~ 442 (444)
T 3if2_A 385 RLKA-KGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAADEQTLIDGIKVIGEVVRELYD 442 (444)
T ss_dssp HHHH-TTEECEEGGGSCTTCCCTTCSGGGSEEEEESSSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH-CCeEEecchhhcCCCCCcccccCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHHc
Confidence 8765 59999999988532 589999999999999999999999987654
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-47 Score=391.86 Aligned_cols=347 Identities=14% Similarity=0.164 Sum_probs=289.4
Q ss_pred CCeEEcCCCCCCCCCh---HHHHHHH--HHHHHc---CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHH
Q 012095 95 VSVIRLAAGEPDFDTP---VLIAEAG--INAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p---~~v~~a~--~~~~~~---~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~ 166 (471)
..+|+|+.|.|+.... +.+.+++ .+++.+ ...+|++..|..+||++|++++ + +++++|++|+|+++
T Consensus 33 ~~~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~----~--~~~~~i~~t~G~~~ 106 (427)
T 3ppl_A 33 NLKLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLL----G--VPVEQVLAGDASSL 106 (427)
T ss_dssp CCCEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHH----T--SCGGGEEECSSCHH
T ss_pred CceEecCCCCCChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHh----C--CCcceEEEeCCcHH
Confidence 4589999999986542 2466665 444433 2478988899999999999998 3 57899999999999
Q ss_pred HH--HHHHHHhcC--C----------CCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc-cCCcE
Q 012095 167 SI--LQAVLAVCS--P----------GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT-EKSRL 231 (471)
Q Consensus 167 al--~~~~~~l~~--~----------gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~-~~~~~ 231 (471)
++ ..+++++++ | ||+|++++|+|..|...++..|++++.+|++.+ ++|+++|+++++ +++++
T Consensus 107 al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~~~~~~~ 183 (427)
T 3ppl_A 107 NIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMISVPMNED---GPDMDAVEELVKNPQVKG 183 (427)
T ss_dssp HHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEEEEEETT---EECHHHHHHHTTSTTEEE
T ss_pred HHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEEeCCCCC---CCCHHHHHHHHhcCCCeE
Confidence 99 478888877 6 899999999999999999999999999999753 389999999994 67888
Q ss_pred EEE-cCCCCCcccCCCHHHHHHHHHHH-HhCCCeEEEEccCCCccccCCCCc--cccccC---CCCCCceEEEecCCccc
Q 012095 232 LIL-CSPSNPTGSVYPKNLLDEIARIV-AKHPRLLVLSDEIYEHIIYAPATH--TSFASL---PGMWERTLTVNGFSKAF 304 (471)
Q Consensus 232 i~i-~~p~NPtG~~~~~~~l~~i~~l~-~~~~~~~ii~De~y~~~~~~~~~~--~~~~~~---~~~~~~~i~~~S~SK~~ 304 (471)
|++ ++||||||.+++.+++++|+++| ++| +++||+||+|.++.|++... .++..+ .+..+++++++||||.
T Consensus 184 v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~- 261 (427)
T 3ppl_A 184 MWVVPVFSNPTGFTVTEDVAKRLSAMETAAP-DFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKI- 261 (427)
T ss_dssp EEECCSSCTTTCCCCCHHHHHHHHHCCCSST-TCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTT-
T ss_pred EEECCCCCCCCCccCCHHHHHHHHHHHhhcC-CCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhc-
Confidence 885 48899999999999999999999 999 99999999999988875432 233333 1236899999999999
Q ss_pred CccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC----CCC
Q 012095 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE----LEG 380 (471)
Q Consensus 305 g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~----~~g 380 (471)
+++|+|+||+++++++++.+........++++++.|.++..+|.......+++.+.++.|+++++.+.+.|.+ +++
T Consensus 262 ~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~ 341 (427)
T 3ppl_A 262 TLAGAGVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGV 341 (427)
T ss_dssp SCTTSSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred cCcCccEEEEEcCHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 5799999999999999999998888788889999999999999751111467888999999999998888765 335
Q ss_pred CeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEEC-CCCCC-----CCCcEEEEeec-CHHHHHH
Q 012095 381 VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP-GDAFG-----DDTCIRISYAA-SLTTLQA 453 (471)
Q Consensus 381 ~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~p-g~~f~-----~~~~iRis~~~-~~e~i~~ 453 (471)
+.+..|++|+|+|++++.. +..++.+.|.+ +||.+.| |..|+ .++++||+++. +++++++
T Consensus 342 ~~~~~p~~g~~~~~~~~~~------------~~~~~~~~l~~-~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~~~~i~~ 408 (427)
T 3ppl_A 342 AQWTVPAGGYFISLDVVPG------------TASRVAELAKE-AGIALTGAGSSYPLRQDPENKNLRLAPSLPPVEELEV 408 (427)
T ss_dssp CEECCCSBSSCEEEECSTT------------CHHHHHHHHHH-TTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHH
T ss_pred eEEeCCCccEEEEEECCcc------------hHHHHHHHHHH-CCCEEecCcCcCCCCCCCCCCeEEEECCCCCHHHHHH
Confidence 7888899999999999853 57788877665 5999999 55554 35799999998 8999999
Q ss_pred HHHHHHHHHHhh
Q 012095 454 AVERIKKGLLTL 465 (471)
Q Consensus 454 ~~~~l~~~l~~~ 465 (471)
++++|.++++++
T Consensus 409 ~~~~l~~~l~~~ 420 (427)
T 3ppl_A 409 AMDGVATCVLLA 420 (427)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-47 Score=386.17 Aligned_cols=370 Identities=15% Similarity=0.125 Sum_probs=296.9
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCC-CC----CChHHHHHHHHH-HHHcC-CCCCCCCCCCHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP-DF----DTPVLIAEAGIN-AIREG-FTRYTPNAGTLELRSA 140 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~-~~----~~p~~v~~a~~~-~~~~~-~~~Y~~~~G~~~lr~~ 140 (471)
+++++..++++++..+...+.. ..|+++|+|+.|.+ ++ .+++.+.+++.+ ++..+ ..+|++..|..++|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ 81 (412)
T 1yaa_A 4 LFNNIELLPPDALFGIKQRYGQ--DQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSN 81 (412)
T ss_dssp TTTTCCCCCCCTTHHHHHHHHT--CCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHH
T ss_pred hhccCcccCCCcHHHHHHHHhc--CCCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHH
Confidence 4567788888877776654432 24678999999996 33 356889999988 76533 4579889999999999
Q ss_pred HHHHHHHHhCCCCCCCcEEE--eCChHHHHHHHH--HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcC
Q 012095 141 ICHKLKEENGLSYTPDQILV--SNGAKQSILQAV--LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 216 (471)
Q Consensus 141 ia~~~~~~~g~~~~~~~i~i--t~G~~~al~~~~--~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~l 216 (471)
+++++...+|.++++++|++ |+|+++++..++ ..++.+||+|++++|+|.+|...++..|++++.+++..++++.+
T Consensus 82 ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~ 161 (412)
T 1yaa_A 82 AAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSL 161 (412)
T ss_dssp HHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEE
T ss_pred HHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCcc
Confidence 99999766676567899999 999999999873 34457999999999999999999999999999999832346789
Q ss_pred CHHHHHhhhccC--CcEEE-EcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCC--CCccccccCCCCC
Q 012095 217 DPKVLESKLTEK--SRLLI-LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP--ATHTSFASLPGMW 291 (471)
Q Consensus 217 d~e~l~~~l~~~--~~~i~-i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~~~~ 291 (471)
|+++++++++++ .++++ +++||||||.+++.+++++|+++|++| +++||+||+|.++.+++ ....++..+....
T Consensus 162 d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~ 240 (412)
T 1yaa_A 162 DLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASK-NHIALFDTAYQGFATGDLDKDAYAVRLGVEKL 240 (412)
T ss_dssp CHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCTTTSSSCHHHHTHHHHHHHHHT
T ss_pred CHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEecccccccCCcccchhHHHHHHHhcC
Confidence 999999998653 34454 599999999999999999999999999 99999999999988764 1122332322122
Q ss_pred C---ceEEEecCCcccCccchhheeeE--c-----CHH----HHHHHHHHHhcccCCCChHHHHHHHHHHhccCC---Ch
Q 012095 292 E---RTLTVNGFSKAFAMTGWRLGYIA--G-----PKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGYA---GG 354 (471)
Q Consensus 292 ~---~~i~~~S~SK~~g~~G~R~G~v~--~-----~~~----~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~---~~ 354 (471)
+ ++++++||||.+|++|+|+||++ + +++ +++.+.........+++.+.|.++.++|+.... ..
T Consensus 241 ~~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 320 (412)
T 1yaa_A 241 STVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWH 320 (412)
T ss_dssp TTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHH
T ss_pred CCCcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHH
Confidence 4 89999999999998899999998 7 666 888887755555566799999999999986210 02
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC---CCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECC
Q 012095 355 EVVSKMVKAFRERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG 431 (471)
Q Consensus 355 ~~~~~~~~~~~~~r~~l~~~L~~~~---g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg 431 (471)
+++++++++++++++++.+.|++++ ++++..|++|+|+|+.+ +...+ ..+++++||.+.|
T Consensus 321 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~-~~~l~~~gi~v~~- 383 (412)
T 1yaa_A 321 KDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGL---------------TPQMV-KRLEETHAVYLVA- 383 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCC---------------CHHHH-HHHHHHHCEECCT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCC---------------CHHHH-HHHHHhCCEEecc-
Confidence 5789999999999999999999873 48888899999999754 33445 6667666999987
Q ss_pred CCCCCCCcEEEEeec-CHHHHHHHHHHHHHHHHh
Q 012095 432 DAFGDDTCIRISYAA-SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 432 ~~f~~~~~iRis~~~-~~e~i~~~~~~l~~~l~~ 464 (471)
++||+++. +++++++++++|+++++.
T Consensus 384 -------~~Ris~~~~~~~~i~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 384 -------SGRASIAGLNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp -------TSEEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred -------CcEEEEccCCHhHHHHHHHHHHHHHHh
Confidence 47999997 889999999999998875
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-47 Score=387.41 Aligned_cols=347 Identities=15% Similarity=0.196 Sum_probs=289.3
Q ss_pred CCeEEcCCCCCC---CCChHHHHHHHH--HHHHcC--CCCC-CCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHH
Q 012095 95 VSVIRLAAGEPD---FDTPVLIAEAGI--NAIREG--FTRY-TPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (471)
Q Consensus 95 ~~~i~l~~g~~~---~~~p~~v~~a~~--~~~~~~--~~~Y-~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~ 166 (471)
...|+|+.|.|+ +++|+.+.+++. +++..+ ..+| ++..|..+||+++++++ + +++++|++|+|+++
T Consensus 25 ~~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~----~--~~~~~i~~t~G~~~ 98 (423)
T 3ez1_A 25 GLNLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYL----D--VKAENVLVWNNSSL 98 (423)
T ss_dssp TCCEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHT----T--SCGGGEEECSSCHH
T ss_pred CceEecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHh----C--CChhhEEEeCCcHH
Confidence 358999999999 777878888875 444332 3789 88899999999999997 3 57889999999999
Q ss_pred HHH--HHHHHhcC--C---------CCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhh--ccCCcE
Q 012095 167 SIL--QAVLAVCS--P---------GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL--TEKSRL 231 (471)
Q Consensus 167 al~--~~~~~l~~--~---------gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l--~~~~~~ 231 (471)
++. .+++++++ | ||+|++++|+|..|...++..|++++.+|++.+ ++|+++|++++ ++++++
T Consensus 99 al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~~~~~~~~ 175 (423)
T 3ez1_A 99 ELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQSD---GPDVDAVERLAGTDPSVKG 175 (423)
T ss_dssp HHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT---EECHHHHHHHHHSCTTEEE
T ss_pred HHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccCCCC---CCCHHHHHHHHhhCCCceE
Confidence 997 88888888 8 599999999999999999999999999998753 38999999999 568898
Q ss_pred EEE-cCCCCCcccCCCHHHHHHHHHHH-HhCCCeEEEEccCCCccccCC-C--CccccccC---CCCCCceEEEecCCcc
Q 012095 232 LIL-CSPSNPTGSVYPKNLLDEIARIV-AKHPRLLVLSDEIYEHIIYAP-A--THTSFASL---PGMWERTLTVNGFSKA 303 (471)
Q Consensus 232 i~i-~~p~NPtG~~~~~~~l~~i~~l~-~~~~~~~ii~De~y~~~~~~~-~--~~~~~~~~---~~~~~~~i~~~S~SK~ 303 (471)
|++ ++||||||.+++.+++++|+++| ++| +++||+||+|..+.|.+ . ...++..+ ....+++++++||||.
T Consensus 176 v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~ 254 (423)
T 3ez1_A 176 ILFVPTYSNPGGETISLEKARRLAGLQAAAP-DFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKI 254 (423)
T ss_dssp EEECSSSCTTTCCCCCHHHHHHHHTCCCSST-TCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTT
T ss_pred EEECCCCCCCCCcCCCHHHHHHHHHHHHhcc-CCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhh
Confidence 875 68999999999999999999999 999 99999999999766544 2 22233332 1235899999999999
Q ss_pred cCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhc--cCCChHHHHHHHHHHHHHHHHHHHHhcC----
Q 012095 304 FAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL--GYAGGEVVSKMVKAFRERRDFLVKSFGE---- 377 (471)
Q Consensus 304 ~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~--~~~~~~~~~~~~~~~~~~r~~l~~~L~~---- 377 (471)
+++|+|+||+++++++++.+........++++.+.|.++..+|.. .. ..+++++.++.|+++++.+.+.|.+
T Consensus 255 -~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 332 (423)
T 3ez1_A 255 -TFAGAGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGG-LEGLMRDHAAIIAPKFRAVDEVLRAELGE 332 (423)
T ss_dssp -SCSSSSCEEEEECHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -ccCCcceEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 579999999999999999999988888888999999999999985 22 2467888888888888887777654
Q ss_pred CC-CCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEEC-CCCCC-----CCCcEEEEeec-CHH
Q 012095 378 LE-GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP-GDAFG-----DDTCIRISYAA-SLT 449 (471)
Q Consensus 378 ~~-g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~p-g~~f~-----~~~~iRis~~~-~~e 449 (471)
++ ++.+..|++|+|+|++++.. +..++.+.|.+ +||.+.| |..|+ .++++||+++. +++
T Consensus 333 ~~~~~~~~~p~~g~~~~~~~~~~------------~~~~~~~~l~~-~gv~v~~~g~~~~~~~~~~~~~iRis~~~~~~~ 399 (423)
T 3ez1_A 333 GGEYATWTLPKGGYFISLDTAEP------------VADRVVKLAEA-AGVSLTPAGATYPAGQDPHNRNLRLAPTRPPVE 399 (423)
T ss_dssp TTSSEEECCCSBSSCEEEEESSS------------CHHHHHHHHHH-TTEECCCTTTTSSTTCCSSSCEEEECCSSSCHH
T ss_pred CCCceEEeCCCccEEEEEECCCC------------cHHHHHHHHHH-CCcEEecCcccccCCCCCCCCeEEEEcCCCCHH
Confidence 43 37788899999999999753 56677776654 5999999 66665 25799999987 999
Q ss_pred HHHHHHHHHHHHHHhhC
Q 012095 450 TLQAAVERIKKGLLTLR 466 (471)
Q Consensus 450 ~i~~~~~~l~~~l~~~~ 466 (471)
++++++++|+++++++.
T Consensus 400 ~i~~~~~~l~~~l~~~~ 416 (423)
T 3ez1_A 400 EVRTAMQVVAACIRLAT 416 (423)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987653
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-45 Score=365.12 Aligned_cols=332 Identities=17% Similarity=0.252 Sum_probs=283.2
Q ss_pred cCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHH
Q 012095 93 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 172 (471)
Q Consensus 93 ~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~ 172 (471)
.|+++|+|+.|++++++|+.+.+++.+++.. ..+| +..+..++|+++++++ | +++++|++|+|+++++..++
T Consensus 24 ~~~~~idl~~~~~~~~~~~~v~~a~~~~~~~-~~~y-~~~~~~~l~~~la~~~----~--~~~~~i~~~~g~t~al~~~~ 95 (361)
T 3ftb_A 24 KGRELLDYSSNINPLGIPKSFLNNIDEGIKN-LGVY-PDVNYRRLNKSIENYL----K--LKDIGIVLGNGASEIIELSI 95 (361)
T ss_dssp ----CEETTCCCCTTCSCHHHHTTHHHHHHG-GGSC-CCTTCHHHHHHHHHHH----T--CCSCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCCCCHHHHHHHHHHHHH-hcCC-CCccHHHHHHHHHHHh----C--CCcceEEEcCCHHHHHHHHH
Confidence 5678999999999999999999999998876 4677 6688999999999997 3 57889999999999999988
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHH
Q 012095 173 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 252 (471)
Q Consensus 173 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~ 252 (471)
+++ |+|+++.|+|.++...++..|++++.++++.+++ ++++++++++++ +++|++++||||||.+++.+++++
T Consensus 96 ~~~----d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~ 168 (361)
T 3ftb_A 96 SLF----EKILIIVPSYAEYEINAKKHGVSVVFSYLDENMC--IDYEDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIH 168 (361)
T ss_dssp TTC----SEEEEEESCCTHHHHHHHHTTCEEEEEECCTTSC--CCHHHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHH
T ss_pred HHc----CcEEEecCChHHHHHHHHHcCCeEEEeecCcccC--CCHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHH
Confidence 877 8999999999999999999999999999986544 677999999988 999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeE-cCHHHHHHHHHHHhcc
Q 012095 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA-GPKHFVAACNKIQSQF 331 (471)
Q Consensus 253 i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~-~~~~~i~~l~~~~~~~ 331 (471)
|+++|++| |+++|+||+|.++.++ ...+........+++++++||||.+|++|+|+||++ +++++++.+.....
T Consensus 169 i~~~~~~~-~~~li~De~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~~-- 243 (361)
T 3ftb_A 169 VLKLAEEK-KKTIIIDEAFIEFTGD--PSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQN-- 243 (361)
T ss_dssp HHHHHHHH-TCEEEEECSSGGGTCC--TTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTSC--
T ss_pred HHHHhhhc-CCEEEEECcchhhcCC--cccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhCC--
Confidence 99999999 9999999999998876 223334444446889999999999999999999998 89999999887654
Q ss_pred cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCe-eeCCCcceEEeEecCCccCCcccCCCCC
Q 012095 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFSTYYGSEAEGFGKI 410 (471)
Q Consensus 332 ~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~-~~~p~~g~~~~~~~~~~~~~~~~~~~~~ 410 (471)
.+++++++|.++.++|+. .+++++.+++++++++++.+.|++++|+. +.++.++ |+|++++..
T Consensus 244 ~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~----------- 307 (361)
T 3ftb_A 244 PWNINCFAEMAAINCLKD----TNYIEESLLWIKKERKRFIEELNKIGFIKRVFSPHAN-FVLCRLENI----------- 307 (361)
T ss_dssp TTCSCHHHHHHHHHTSSC----HHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCSSS-EEEEEESSS-----------
T ss_pred CCCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHhCCCCceecCCCCe-EEEEEcCCC-----------
Confidence 346899999999999874 68899999999999999999999998898 6666655 578888752
Q ss_pred CCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012095 411 ENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLL 463 (471)
Q Consensus 411 ~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~l~ 463 (471)
+..++.+.|.++ ||.+.||..|+. ++++|++++ +.++++++++.|+++.+
T Consensus 308 -~~~~l~~~l~~~-gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 308 -SGEKLYDSLLKE-DIVIRRCCNFIGLDDSFVRFAIK-DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp -CHHHHHHHHHTT-TEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHC-CeEEeeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHHh
Confidence 678999998876 999999999874 579999998 55566666666666554
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=368.14 Aligned_cols=337 Identities=19% Similarity=0.275 Sum_probs=281.1
Q ss_pred cCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHH
Q 012095 93 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 172 (471)
Q Consensus 93 ~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~ 172 (471)
.|+++|+|+.|++++++|+.+.+++.+++.. ..+| +..|..++|+++++++ | +++++|++|+|+++++..++
T Consensus 22 ~~~~~idl~~~~~~~~~~~~v~~a~~~~~~~-~~~y-~~~~~~~l~~~la~~~----~--~~~~~v~~~~g~~~al~~~~ 93 (364)
T 1lc5_A 22 SPDQLLDFSANINPLGMPVSVKRALIDNLDC-IERY-PDADYFHLHQALARHH----Q--VPASWILAGNGETESIFTVA 93 (364)
T ss_dssp CGGGSEECSSCCCTTCCCHHHHHHHHHTGGG-GGSC-CCTTCHHHHHHHHHHH----T--SCGGGEEEESSHHHHHHHHH
T ss_pred CccceEEeccccCCCCCCHHHHHHHHHHHHH-hhcC-CCCCHHHHHHHHHHHH----C--cCHHHEEECCCHHHHHHHHH
Confidence 4567999999998888889999999887754 4678 4468999999999997 3 46789999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHH
Q 012095 173 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 252 (471)
Q Consensus 173 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~ 252 (471)
+++ +||+|+++.|+|.++...++..|++++.+|++.++++.+ ++++.+.+++++++|++++||||||.+++.+++++
T Consensus 94 ~~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~ 170 (364)
T 1lc5_A 94 SGL--KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL-TDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQA 170 (364)
T ss_dssp HHH--CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCC-CTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHH
T ss_pred HHc--CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccch-hHHHHHhccCCCCEEEEeCCCCCCCCCCCHHHHHH
Confidence 988 789999999999999999999999999999875445554 57677777778999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeE-cCHHHHHHHHHHHhcc
Q 012095 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA-GPKHFVAACNKIQSQF 331 (471)
Q Consensus 253 i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~-~~~~~i~~l~~~~~~~ 331 (471)
|+++|++| +++||+||+|.++.+++. ++.......++++++.||||.+|++|+|+||++ +++++++.+.....
T Consensus 171 i~~~~~~~-~~~li~De~~~~~~~~~~---~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~-- 244 (364)
T 1lc5_A 171 IADRCKSL-NINLILDEAFIDFIPHET---GFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQM-- 244 (364)
T ss_dssp HHHHHHHH-TCEEEEECTTGGGSTTCC---CSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSC--
T ss_pred HHHHhhhc-CcEEEEECcChhhccCcc---chhhHhccCCCEEEEEECchhhcCCccceEEEEECCHHHHHHHHHhCC--
Confidence 99999999 999999999998876532 222322335789999999999999999999999 99999999887654
Q ss_pred cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCC
Q 012095 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 411 (471)
Q Consensus 332 ~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~ 411 (471)
.++++.++|.++.++|+. .+++++.++.++++++++.+.|++++|+.+.++. |+|+|++++.
T Consensus 245 ~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-g~~~~~~~~~------------- 306 (364)
T 1lc5_A 245 PWSVNALAALAGEVALQD----SAWQQATWHWLREEGARFYQALCQLPLLTVYPGR-ANYLLLRCER------------- 306 (364)
T ss_dssp TTCSCHHHHHHHHHGGGC----HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCS-SSEEEEEESC-------------
T ss_pred CCCCCHHHHHHHHHHHhC----cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCCC-CeEEEEECCC-------------
Confidence 456899999999999885 5789999999999999999999998888887555 5567888863
Q ss_pred CHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012095 412 NSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 412 ~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~l~~~~ 466 (471)
+..++.+.|+++ ||.+.||..|+. ++++|++++. .++++++++.|+++++++.
T Consensus 307 ~~~~l~~~l~~~-gi~v~~g~~~~~~~~~~iRis~~~-~~~~~~l~~~l~~~~~~~~ 361 (364)
T 1lc5_A 307 EDIDLQRRLLTQ-RILIRSCANYPGLDSRYYRVAIRS-AAQNERLLAALRNVLTGIA 361 (364)
T ss_dssp TTCCHHHHHHTT-TEECEECTTSTTCCTTEEEEECCC-HHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHC-CcEEeeCcccCCCCCCEEEEEeCC-HHHHHHHHHHHHHHhhccc
Confidence 234688888765 999999998853 5799999874 6778888888888877654
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-47 Score=395.62 Aligned_cols=357 Identities=22% Similarity=0.293 Sum_probs=290.2
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCC-CCCCCHHHHHHHHHHHHHH-hC-CCCC-CCcEEEeCChHHHHHHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYT-PNAGTLELRSAICHKLKEE-NG-LSYT-PDQILVSNGAKQSILQA 171 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~-~~~G~~~lr~~ia~~~~~~-~g-~~~~-~~~i~it~G~~~al~~~ 171 (471)
++|+|+.|.++++ |+.+++++.+++.. .+|+ +..|..++|+++++++.+. .+ +++. +++|++|+|+++++..+
T Consensus 104 ~~i~l~~g~~~~~-~~~~v~a~~~~~~~--~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~ 180 (533)
T 3f6t_A 104 DAVNYCHTELGLN-RDKVVAEWVNGAVA--NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYA 180 (533)
T ss_dssp HHHHHHHHTTCCC-HHHHHHHHHHHHHT--CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHH
T ss_pred hheeccCCCCCcC-CcHHHHHHHHHHHh--CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHH
Confidence 3789999999986 55666666666554 3454 7889999999999999766 34 4555 47999999999999999
Q ss_pred HHH-----hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCC--CCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccC
Q 012095 172 VLA-----VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI--SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 244 (471)
Q Consensus 172 ~~~-----l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~--~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~ 244 (471)
+.+ ++++||.|++++|+|.+|...++..|++++.++++. +++|.+|+++|++++++++++|++++||||||.+
T Consensus 181 ~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v~l~~p~NPtG~~ 260 (533)
T 3f6t_A 181 FHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSKE 260 (533)
T ss_dssp HHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCTTEEEEEEESSCTTTCBC
T ss_pred HHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEEEEeCCCCCCccc
Confidence 998 789999999999999999999999999999999875 5678999999999999899999999999999999
Q ss_pred CCHHHHHHHHHHHH-hCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHH----
Q 012095 245 YPKNLLDEIARIVA-KHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH---- 319 (471)
Q Consensus 245 ~~~~~l~~i~~l~~-~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~---- 319 (471)
++.+++++|+++|+ +| +++||+||+|.++.++. .++.... .+++++++||||.+|++|+|+||++++++
T Consensus 261 ~~~~~l~~l~~la~~~~-~~~li~De~y~~~~~~~---~~~~~~~--~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~ 334 (533)
T 3f6t_A 261 FDTNALNAIKQAVEKNP-KLMIISDEVYGAFVPNF---KSIYSVV--PYNTMLVYSYSKLFGCTGWRLGVIALNEKNVFD 334 (533)
T ss_dssp CCHHHHHHHHHHHHHCT-TCEEEEECTTGGGSTTC---CCHHHHS--GGGEEEEEESHHHHTCGGGCEEEEEEESSCHHH
T ss_pred cCHHHHHHHHHHHHhCC-CCEEEEcCCccccccCc---cCHhhcC--CCCEEEEecCcccCCCcccceEEEEECcHHHHH
Confidence 99999999999999 68 99999999999887643 2333332 47899999999999999999999999776
Q ss_pred -HHHHH--------------------------------HHHHhcccCCCChHHHHH----HHHHHhc----cCCChHHHH
Q 012095 320 -FVAAC--------------------------------NKIQSQFTSGASSISQKA----GVAALGL----GYAGGEVVS 358 (471)
Q Consensus 320 -~i~~l--------------------------------~~~~~~~~~~~~~~~q~a----a~~~L~~----~~~~~~~~~ 358 (471)
+++.+ .........+++.+.|.+ +..+|.. .. ...+++
T Consensus 335 ~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~-~~~~~~ 413 (533)
T 3f6t_A 335 DNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGS-DDPYID 413 (533)
T ss_dssp HHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGT-BCHHHH
T ss_pred HHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccc-hHHHHH
Confidence 43322 233445566788999988 4556641 11 368899
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCC------CCCCCHHHHHHHHHHcCCEEEECCC
Q 012095 359 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGF------GKIENSESLCRYLLDKAQVALVPGD 432 (471)
Q Consensus 359 ~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~Ll~~~gV~v~pg~ 432 (471)
++++.|+++++++.+.|. + ++.+..|+++||+|++++...... .+. ....++.+++.+|++++||.+.||+
T Consensus 414 ~~~~~~~~r~~~l~~~L~-~-~~~~~~~~~g~~~~~~l~~~~~~~-~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~ 490 (533)
T 3f6t_A 414 IARKLVSERYDQLHDAMQ-A-PKDETDTNTHYYSLIDIYRLAEKI-YGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGV 490 (533)
T ss_dssp HHHHHHHHHHHHHHHHHT-C-CCCCSTTBCCSEEEEEHHHHHHHH-HCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTE
T ss_pred HHHHHHHHHHHHHHHhcC-C-CccccCCCceEEEEEehHhhhhhc-cchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCc
Confidence 999999999999999997 6 788888999999999986410000 000 0001567888888888899999999
Q ss_pred CCCC-CCcEEEEeec-CHHHHHHHHHHHHHHHHhh
Q 012095 433 AFGD-DTCIRISYAA-SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 433 ~f~~-~~~iRis~~~-~~e~i~~~~~~l~~~l~~~ 465 (471)
.|+. ++++|+|++. +++++++++++|.++++++
T Consensus 491 ~f~~~~~~iRls~a~~~~e~i~~~i~~L~~~l~~~ 525 (533)
T 3f6t_A 491 GFGAKPGELRVSQANLPTEDYALIGKQVLELLKEY 525 (533)
T ss_dssp EECSSTTEEEEESSSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEEEeeCCHHHHHHHHHHHHHHHHHH
Confidence 9986 5899999996 9999999999999998875
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-46 Score=380.28 Aligned_cols=365 Identities=15% Similarity=0.120 Sum_probs=279.6
Q ss_pred ccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCC---CCC--CChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHH
Q 012095 70 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGE---PDF--DTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICH 143 (471)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~---~~~--~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~ 143 (471)
.++..++++++..+....... .++++|+|+.|+ ++. ++++.+.+++.+++.+ ...+|++..|..+||+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~ 80 (396)
T 2q7w_A 3 ENITAAPADPILGLADLFRAD--ERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQE 80 (396)
T ss_dssp TTCCCCCC-------------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHH
T ss_pred cccccCCCchHHHHHHHHhcc--CCCCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHH
Confidence 345666677666555443332 356799999998 333 4568899999888765 45679899999999999999
Q ss_pred HHHHHhCCCCCCCcEEE--eCChHHHHHHHHHHh--cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHH
Q 012095 144 KLKEENGLSYTPDQILV--SNGAKQSILQAVLAV--CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPK 219 (471)
Q Consensus 144 ~~~~~~g~~~~~~~i~i--t~G~~~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e 219 (471)
++....+.++++++|++ |+|+++++..+++.+ +.+||+|++++|+|++|...++..|++++.++++.++++.+|++
T Consensus 81 ~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 160 (396)
T 2q7w_A 81 LLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFD 160 (396)
T ss_dssp HHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHH
T ss_pred HHhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHH
Confidence 99654443346789998 999999999988766 46999999999999999999999999999999865456889999
Q ss_pred HHHhhhcc---CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCC-CCccccccCCCCCCceE
Q 012095 220 VLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP-ATHTSFASLPGMWERTL 295 (471)
Q Consensus 220 ~l~~~l~~---~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~~~i 295 (471)
++++++++ +++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.+++ ....++..+....++++
T Consensus 161 ~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (396)
T 2q7w_A 161 ALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEK-GWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELI 239 (396)
T ss_dssp HHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEE
T ss_pred HHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEecccccccCCccchhHHHHHHHhcCCcEE
Confidence 99999864 366777899999999999999999999999999 99999999999987753 11223333322247899
Q ss_pred EEecCCcccCccchhheeeEc---CH----HHHHHHHHHHhcccCCCChHHHHHHHHHHhccC---CChHHHHHHHHHHH
Q 012095 296 TVNGFSKAFAMTGWRLGYIAG---PK----HFVAACNKIQSQFTSGASSISQKAGVAALGLGY---AGGEVVSKMVKAFR 365 (471)
Q Consensus 296 ~~~S~SK~~g~~G~R~G~v~~---~~----~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~---~~~~~~~~~~~~~~ 365 (471)
+++||||.+|++|+|+||+++ ++ ++++.+.........+++.++|.++.++|+... ...++++++++.++
T Consensus 240 ~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~ 319 (396)
T 2q7w_A 240 VASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQ 319 (396)
T ss_dssp EEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHH
T ss_pred EEEeccccccccccccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999986 55 456655554444455679999999999987520 00367888999999
Q ss_pred HHHHHHHHHhcCCC---CCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEE
Q 012095 366 ERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRI 442 (471)
Q Consensus 366 ~~r~~l~~~L~~~~---g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRi 442 (471)
++++++.+.|+++. ++++..|++|+|+|++++ . +++..+++++||.+.|| +||
T Consensus 320 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~~l~~~gv~v~~~--------~Ri 375 (396)
T 2q7w_A 320 RMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLT---------------K-EQVLRLREEFGVYAVAS--------GRV 375 (396)
T ss_dssp HHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCC---------------H-HHHHHHHHHHCEECCTT--------CEE
T ss_pred HHHHHHHHHHHhcCCCCCcceecCCCceEEEecCC---------------H-HHHHHHHHhcCeeecCC--------ceE
Confidence 99999999999873 388878899999998653 3 34445565669999885 599
Q ss_pred Eeec-CHHHHHHHHHHHHHH
Q 012095 443 SYAA-SLTTLQAAVERIKKG 461 (471)
Q Consensus 443 s~~~-~~e~i~~~~~~l~~~ 461 (471)
+++. +++++++++++|+++
T Consensus 376 s~~~~~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 376 NVAGMTPDNMAPLCEAIVAV 395 (396)
T ss_dssp EGGGCCTTTHHHHHHHHHHH
T ss_pred EEeecCHHHHHHHHHHHHhc
Confidence 9997 889999999999875
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-46 Score=391.49 Aligned_cols=355 Identities=22% Similarity=0.322 Sum_probs=279.4
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHH-HHHhCCCC---CCCcEEEeCChHHHHHHHH
Q 012095 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKL-KEENGLSY---TPDQILVSNGAKQSILQAV 172 (471)
Q Consensus 97 ~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~-~~~~g~~~---~~~~i~it~G~~~al~~~~ 172 (471)
+|+|+.|++.++ ++.+.+++.+.+.. .+|++..|..++|+++++++ .+.++..+ ++++|++|+|+++++..++
T Consensus 106 ~i~l~~g~~~~~-~~~~~~al~~~~~~--~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~ 182 (546)
T 2zy4_A 106 SLSYVRDQLGLD-PAAFLHEMVDGILG--CNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIF 182 (546)
T ss_dssp HHHHHHHTSCCC-HHHHHHHHHHHHHT--CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHH
T ss_pred hhecccCCCCCC-ChHHHHHHHHhhhc--CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHHH
Confidence 799999999874 55666777776642 68988889999999988765 44444322 4689999999999999999
Q ss_pred HH-----hcCCCCeEEEcCCCCCChHHHHHHc--CCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCC
Q 012095 173 LA-----VCSPGDEVIIPAPFWVSYPEMARIA--DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245 (471)
Q Consensus 173 ~~-----l~~~gd~Vlv~~p~y~~~~~~~~~~--G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~ 245 (471)
.+ +++|||.|++++|+|+.|...+... |++++.++++++++|.+|+++|++++++++++|++++||||||.++
T Consensus 183 ~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~p~NPtG~~~ 262 (546)
T 2zy4_A 183 ESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDPAIKIFFCVNPSNPPSVKM 262 (546)
T ss_dssp HHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGSTTEEEEEEESSCSSSCBCC
T ss_pred HHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCCCCeEEEEECCCCCCCccC
Confidence 87 5789999999999999999886654 6899999998877899999999998888899999999999999999
Q ss_pred CHHHHHHHHHHH--HhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHH-HHH
Q 012095 246 PKNLLDEIARIV--AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-FVA 322 (471)
Q Consensus 246 ~~~~l~~i~~l~--~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~-~i~ 322 (471)
+.+++++|+++| +++ +++||+||+|.++.++ ..++.... .+++|+++||||.+|++|+|+||++++++ +++
T Consensus 263 ~~~~l~~l~~~a~~~~~-~~~ii~De~y~~~~~~---~~s~~~~~--~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~ 336 (546)
T 2zy4_A 263 DQRSLERVRNIVAEHRP-DLMILTDDVYGTFADD---FQSLFAIC--PENTLLVYSFSKYFGATGWRLGVVAAHQQNVFD 336 (546)
T ss_dssp CHHHHHHHHHHHHHTCT-TCEEEEECTTGGGSTT---CCCHHHHC--GGGEEEEEESTTTTTCGGGCEEEEEEESSCHHH
T ss_pred CHHHHHHHHHHHHhccC-CcEEEEeCcchhhccc---CcCHHHhC--CCCEEEEEeCccccCCCCcceEEEEECCHHHHH
Confidence 999999999999 778 9999999999998753 23444332 36899999999999999999999999875 777
Q ss_pred HHHHH-------------H-----------------------hcccCCCChHHHHHH-----HHHHhccCCChHHHHHHH
Q 012095 323 ACNKI-------------Q-----------------------SQFTSGASSISQKAG-----VAALGLGYAGGEVVSKMV 361 (471)
Q Consensus 323 ~l~~~-------------~-----------------------~~~~~~~~~~~q~aa-----~~~L~~~~~~~~~~~~~~ 361 (471)
.+.+. . .....+.+.+.|.++ .+++++ .+.|+++++
T Consensus 337 ~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~---~~~~~~~~r 413 (546)
T 2zy4_A 337 LALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDE---ADEYKHTLK 413 (546)
T ss_dssp HHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCT---TCHHHHHHH
T ss_pred HHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhc---cHHHHHHHH
Confidence 76321 1 122346788888774 233443 368899999
Q ss_pred HHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCC-cccCCC----CCCCHHHHHHHHHHcCCEEEECCCCCCC
Q 012095 362 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGS-EAEGFG----KIENSESLCRYLLDKAQVALVPGDAFGD 436 (471)
Q Consensus 362 ~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~-~~~~~~----~~~~~~~l~~~Ll~~~gV~v~pg~~f~~ 436 (471)
+.|+++++.+.+.|. + ++.+.+|+++||+|++++..... ...++. ...++.+++.++++++||.+.||+.|+.
T Consensus 414 ~~~~~r~~~l~~~L~-~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~v~pG~~F~~ 491 (546)
T 2zy4_A 414 QLIRRRETTLYRELG-M-PPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGS 491 (546)
T ss_dssp HHHHHHHHHHHGGGT-S-SCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCCEESSCTTC
T ss_pred HHHHHHHHHHHHhcC-C-CcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEEEeCccccCC
Confidence 999999999999996 5 56667889999999998631000 000000 0002345555566667999999999985
Q ss_pred -CCcEEEEeec-CHHHHHHHHHHHHHHHHhh
Q 012095 437 -DTCIRISYAA-SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 437 -~~~iRis~~~-~~e~i~~~~~~l~~~l~~~ 465 (471)
++++||+++. +++++++++++|+++++++
T Consensus 492 ~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~ 522 (546)
T 2zy4_A 492 NRPSGRASLANLNEYEYAAIGRALRKMADEL 522 (546)
T ss_dssp SSCEEEEESSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeccCCHHHHHHHHHHHHHHHHHH
Confidence 4689999998 8899999999999988754
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-45 Score=364.97 Aligned_cols=332 Identities=23% Similarity=0.375 Sum_probs=286.7
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHH
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 173 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~ 173 (471)
+++|+|+.|++++++|+.+.+++.+++.+ ...+|+ ..+..++|+++++++ |.+ ++++|++|+|+++++..+++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~-~~~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~ 103 (367)
T 3euc_A 30 HGLVKLDAMENPYRLPPALRSELAARLGEVALNRYP-VPSSEALRAKLKEVM----QVP-AGMEVLLGNGSDEIISMLAL 103 (367)
T ss_dssp TTCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSC-CCCHHHHHHHHHHHH----TCC-TTCEEEEEEHHHHHHHHHHH
T ss_pred CCeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCC-CCcHHHHHHHHHHHh----CCC-CcceEEEcCCHHHHHHHHHH
Confidence 57899999999999999999999998874 467784 468899999999987 432 67899999999999999999
Q ss_pred HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc-CCcEEEEcCCCCCcccCCCHHHHHH
Q 012095 174 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDE 252 (471)
Q Consensus 174 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~-~~~~i~i~~p~NPtG~~~~~~~l~~ 252 (471)
+++++||+|+++.|+|.++...++..|++++.++++. +|.+|++++++++++ ++++|++++||||||.+++.+++++
T Consensus 104 ~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~ 181 (367)
T 3euc_A 104 AAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRA--DFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEA 181 (367)
T ss_dssp HTCCTTCEEEEEESCSCCSCHHHHTTTCEEEEEECCT--TSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHH
T ss_pred HHcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCC--CCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHHH
Confidence 9999999999999999999999999999999999874 577999999999987 8999999999999999999999999
Q ss_pred HHHHHHhCC-CeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcc
Q 012095 253 IARIVAKHP-RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 331 (471)
Q Consensus 253 i~~l~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~ 331 (471)
|+++|++|+ |+++|+||+|.++...+ ... .+ ...++++++.||||. +++|+|+||+++++++++.+.....
T Consensus 182 i~~~~~~~~~~~~li~De~~~~~~~~~--~~~--~~-~~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~~~~~~~~~-- 253 (367)
T 3euc_A 182 IVRAAQGSVCRSLVVVDEAYQPFAQES--WMS--RL-TDFGNLLVMRTVSKL-GLAGIRLGYVAGDPQWLEQLDKVRP-- 253 (367)
T ss_dssp HHHHTBTTSCBCEEEEECTTCCSSSCC--SGG--GG-GTCTTEEEEEECCCT-TSCSCCEEEEEECHHHHHHHGGGCC--
T ss_pred HHHhhhhcCCCcEEEEeCcchhhcccc--hHH--HH-hhCCCEEEEecchhh-cccccCceeeeeCHHHHHHHHHhCC--
Confidence 999999873 59999999999876332 111 12 235789999999999 8999999999999999998877554
Q ss_pred cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCC
Q 012095 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 411 (471)
Q Consensus 332 ~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~ 411 (471)
.++++.++|.++.++|+. .+++++.+++++++++++.+.|+++||+.+. +.+++|+|++++
T Consensus 254 ~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~~~~~~~-------------- 314 (367)
T 3euc_A 254 PYNVNVLTEATALFALEH----VAVLDEQAAQLRAERSRVAEGMAAHGGVTVF-PSAANFLLARVP-------------- 314 (367)
T ss_dssp SSCCCHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHHHHTSTTCEEC-CCSSSEEEEECS--------------
T ss_pred CCCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECC--------------
Confidence 446899999999999985 7889999999999999999999999899865 556667898886
Q ss_pred CHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012095 412 NSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLL 463 (471)
Q Consensus 412 ~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~l~ 463 (471)
+..++.+.|.+ +||.+.+|..|+. ++++|++++ +++++++++++|+++++
T Consensus 315 ~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 315 DAAQTFDRLLA-RKVLIKNVSKMHPLLANCLRVTVS-TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp CHHHHHHHHHT-TTEECEECGGGCGGGTTEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHH-CCeEEEECCccCCCCCCEEEEecC-CHHHHHHHHHHHHHHhc
Confidence 46788888754 5999999998763 589999988 88999999999998764
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=379.33 Aligned_cols=331 Identities=18% Similarity=0.183 Sum_probs=266.7
Q ss_pred cCCCeEEcCCCCCCCCChHHHHHHHHHHH--Hc--CCCCCCCCCCC-----HHHHHHHHHHHHHHhCCCCCC-CcEEEeC
Q 012095 93 AGVSVIRLAAGEPDFDTPVLIAEAGINAI--RE--GFTRYTPNAGT-----LELRSAICHKLKEENGLSYTP-DQILVSN 162 (471)
Q Consensus 93 ~g~~~i~l~~g~~~~~~p~~v~~a~~~~~--~~--~~~~Y~~~~G~-----~~lr~~ia~~~~~~~g~~~~~-~~i~it~ 162 (471)
.+.++|+|+.|+|++++|+.+.+++.+.. .. +..+|++..|. ++||++++++++ .+|+++++ ++|++|+
T Consensus 20 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~i~~t~ 98 (391)
T 3bwn_A 20 MSDFVVNLDHGDPTAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATEDRYIVVGT 98 (391)
T ss_dssp TTTSCEECSSCCCGGGHHHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSSSEEEEEE
T ss_pred CCCCeeEcCCCCCCCCCCHHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCCCeEEEeC
Confidence 46679999999999877777777653322 11 45689999998 999999999998 67888877 5999999
Q ss_pred ChHHHHHHHHHHhcCCCC----eEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCC
Q 012095 163 GAKQSILQAVLAVCSPGD----EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 238 (471)
Q Consensus 163 G~~~al~~~~~~l~~~gd----~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~ 238 (471)
|+++++..++++++++|| +|++++|+|+.|...++..|++++.++++.+ + ++ .+++++|++++||
T Consensus 99 G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~-~--l~--------~~~~k~v~l~~p~ 167 (391)
T 3bwn_A 99 GSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGDAW-G--FD--------KKGPYIELVTSPN 167 (391)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEEEST-T--CC--------CCSCEEEEEESSC
T ss_pred ChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHHHcCCeEEEecCCHH-H--cC--------CCCCEEEEECCCC
Confidence 999999999999999999 9999999999999999999999999887643 2 22 2578999999999
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEc-C
Q 012095 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-P 317 (471)
Q Consensus 239 NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~-~ 317 (471)
||||.+++ +|++.++.+ +++||+||+|.+ +. ..++. ...+++|+++||||.||++|+|+||+++ +
T Consensus 168 NPtG~~~~-----~l~~~~~~~-~~~ii~De~y~~----~~-~~~l~---~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~ 233 (391)
T 3bwn_A 168 NPDGTIRE-----TVVNRPDDD-EAKVIHDFAYYW----PH-YTPIT---RRQDHDIMLFTFSKITGHAGSRIGWALVKD 233 (391)
T ss_dssp TTTCCCCC-----CCC-----C-CCEEEEECTTCS----TT-TSCCC---CCBCCSEEEEEHHHHHSCGGGCEEEEEECC
T ss_pred CCCchhHH-----HHHHHhhcC-CCEEEEeCCCCC----CC-CCccc---cCCCCeEEEEechhhcCCCccceEEEEecC
Confidence 99999997 344422222 399999999973 21 12222 1357899999999999999999999997 8
Q ss_pred HHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCC-------ChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC----
Q 012095 318 KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA-------GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP---- 386 (471)
Q Consensus 318 ~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~-------~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p---- 386 (471)
+++++.+...+.....+++.++|.++..+|+.+.. .+.|++++++.|+++++++.+.|++++|+.+..|
T Consensus 234 ~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~ 313 (391)
T 3bwn_A 234 KEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAF 313 (391)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEE
T ss_pred HHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccc
Confidence 99999999887766678999999999999986310 1468999999999999999999999877776543
Q ss_pred ---------CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-CCcEEEEeecCHHHHHHHHH
Q 012095 387 ---------QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-DTCIRISYAASLTTLQAAVE 456 (471)
Q Consensus 387 ---------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~-~~~iRis~~~~~e~i~~~~~ 456 (471)
.+|+|+|++++.. +++..+++++||.+.||+.|+. ++++|||++.++++++++++
T Consensus 314 ~~f~~~~~~~~g~~~~~~~~~~---------------~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~~~~e~i~~~~~ 378 (391)
T 3bwn_A 314 CNYFGKSLESYPAFAWLGTKEE---------------TDLVSELRRHKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLE 378 (391)
T ss_dssp ETTTTEEECCCCSEEEEEESSS---------------CCHHHHHHHTTEECEEGGGGTCCTTEEEEESCSCHHHHHHHHH
T ss_pred cccccccCCCcceEEEecCCcH---------------HHHHHHHHHCCEEEccCCCCCCCCCEEEEEecCCHHHHHHHHH
Confidence 4556899998631 1334455567999999999986 68999999999999999999
Q ss_pred HHHHHHHh
Q 012095 457 RIKKGLLT 464 (471)
Q Consensus 457 ~l~~~l~~ 464 (471)
+|++++++
T Consensus 379 ~L~~~~~~ 386 (391)
T 3bwn_A 379 RLANMKLI 386 (391)
T ss_dssp HHHSCC--
T ss_pred HHHHHHHh
Confidence 99987754
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-44 Score=358.28 Aligned_cols=330 Identities=21% Similarity=0.310 Sum_probs=280.9
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcC---CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHH
Q 012095 97 VIRLAAGEPDFDTPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 173 (471)
Q Consensus 97 ~i~l~~g~~~~~~p~~v~~a~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~ 173 (471)
.|+|+.|++++++|+.+.+++.+++.+. ..+|++..+ .++++++++++++.+|.++++++|++|+|+++++..+++
T Consensus 32 ~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~ 110 (369)
T 3cq5_A 32 DIRLNTNENPYPPSEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQ 110 (369)
T ss_dssp SEECSSCCCCSCCCHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHH
T ss_pred ceeccCCCCCCCCCHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHH
Confidence 3999999999988999999999888652 567866555 799999999999998887888999999999999999999
Q ss_pred HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc-CCcEEEEcCCCCCcccCCCHHHHHH
Q 012095 174 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDE 252 (471)
Q Consensus 174 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~-~~~~i~i~~p~NPtG~~~~~~~l~~ 252 (471)
+++++||.|++++|+|+++...++..|++++.+|.+ ++|.+|++++++++++ ++++|++++|+||||.+++. ++
T Consensus 111 ~l~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~---~~ 185 (369)
T 3cq5_A 111 AFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSRG--ADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSL---DD 185 (369)
T ss_dssp HHCSTTCEEEEEESSCTHHHHHHHHTTCEEEEEECC--TTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCH---HH
T ss_pred HhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEecCC--cCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCH---HH
Confidence 999999999999999999999999999999999975 4577999999999987 89999999999999999995 55
Q ss_pred HHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCC-ceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcc
Q 012095 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE-RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 331 (471)
Q Consensus 253 i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~ 331 (471)
+.++|+.+ +++||+||+|.++.++ .+...+....+ +++++.||||.+|++|+|+||+++++++++.+......
T Consensus 186 l~~l~~~~-~~~li~De~~~~~~~~----~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~- 259 (369)
T 3cq5_A 186 VERIINVA-PGIVIVDEAYAEFSPS----PSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANPAFIDAVMLVRLP- 259 (369)
T ss_dssp HHHHHHHC-SSEEEEECTTGGGCCS----CCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECTHHHHHHHTTSCT-
T ss_pred HHHHHHhC-CCEEEEECCchhhcCC----cchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCHHHHHHHHHcCCC-
Confidence 55566667 7999999999987653 23333322345 89999999999999999999999999999888765543
Q ss_pred cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCC
Q 012095 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 411 (471)
Q Consensus 332 ~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~ 411 (471)
++++.+.|.++.++|+. .+++++.+++++++++++.+.|++. |+.+.++ ++.|+|++++.
T Consensus 260 -~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~~~~~~~~~~------------- 319 (369)
T 3cq5_A 260 -YHLSALSQAAAIVALRH----SADTLGTVEKLSVERVRVAARLEEL-GYAVVPS-ESNFVFFGDFS------------- 319 (369)
T ss_dssp -TCSCHHHHHHHHHHHHT----HHHHHTHHHHHHHHHHHHHHHHHHH-TCEEECC-SSSEEEEECCS-------------
T ss_pred -CCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHhC-CCEECCC-CCeEEEEECCC-------------
Confidence 45899999999999985 5788999999999999999999885 8888754 45568888861
Q ss_pred CHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012095 412 NSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLL 463 (471)
Q Consensus 412 ~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~ 463 (471)
+..++.+.|.+ +||.+.|| +.++++|++++ +++++++++++|+++++
T Consensus 320 ~~~~l~~~l~~-~gi~v~~~---~~~~~iRis~~-~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 320 DQHAAWQAFLD-RGVLIRDV---GIAGHLRTTIG-VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp SHHHHHHHHHH-TTEECBCC---SCTTEEEEECC-CHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHH-CCEEEEEC---CCCCeEEEEeC-CHHHHHHHHHHHHHHHh
Confidence 67789988865 59999998 34689999999 78899999999998874
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-46 Score=377.81 Aligned_cols=330 Identities=16% Similarity=0.197 Sum_probs=277.7
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHH-cCCCC--CCCCC-C---CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHH
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIR-EGFTR--YTPNA-G---TLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~-~~~~~--Y~~~~-G---~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~a 167 (471)
..+|+|+.|+|++++|+.+.+++.+++. .+... |++.. | ..+||++|++++++.++..+++++|++|+|++++
T Consensus 56 ~~~i~l~~g~~~~~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~a 135 (427)
T 2hox_A 56 GCSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQL 135 (427)
T ss_dssp TCCEECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHH
T ss_pred CceEEecCcCCCCCCCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHH
Confidence 4589999999999888888888887763 33433 98888 9 9999999999999877776789999999999999
Q ss_pred HHHHHHHh--------cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCC
Q 012095 168 ILQAVLAV--------CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSN 239 (471)
Q Consensus 168 l~~~~~~l--------~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~N 239 (471)
+..++.++ ++|||.|++++|+|+.|...++..|++++. |.+|++.|++++++++|+|++++|||
T Consensus 136 l~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~--------~~~d~~~l~~~~~~~~k~v~l~~p~N 207 (427)
T 2hox_A 136 IHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYV--------WAGNAANYVNVSNPEQYIEMVTSPNN 207 (427)
T ss_dssp HHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEE--------EEEEGGGGTTCSCGGGEEEEEESSCT
T ss_pred HHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCeeee--------ecCCHHHHHHhhcCCceEEEEcCCCC
Confidence 99999999 999999999999999999999999988763 44788999998888899999999999
Q ss_pred CcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEc-CH
Q 012095 240 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PK 318 (471)
Q Consensus 240 PtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~-~~ 318 (471)
|||.+++ +. ++ ++.++.|+.|.+ + ..++..+. .+++|+++||||.+|++|+|+||+++ ++
T Consensus 208 PtG~~~~-~~-------l~---~~~~i~d~~~~~----~--~~s~~~~~--~~~~i~~~S~SK~~g~~G~RiG~~~~~~~ 268 (427)
T 2hox_A 208 PEGLLRH-AV-------IK---GCKSIYDMVYYW----P--HYTPIKYK--ADEDILLFTMSKFTGHSGSRFGWALIKDE 268 (427)
T ss_dssp TTCCCCC-CS-------ST---TCEEEEECTTCS----T--TTSCCCSC--BCCSEEEEEHHHHTSCGGGCCEEEEECCH
T ss_pred CcccccH-HH-------Hc---CCCEEEeecccC----C--CCCccccC--CCceEEEEeChhcCCCCCceEEEEEECCH
Confidence 9999999 42 22 456778887742 2 23444443 57899999999999999999999999 58
Q ss_pred HHHHHHHHHHhcccCCCChHHHHHHHHHHhccC--------CChHHHHHHHHHHHHHHHHHHHHhcCCCCCee-------
Q 012095 319 HFVAACNKIQSQFTSGASSISQKAGVAALGLGY--------AGGEVVSKMVKAFRERRDFLVKSFGELEGVKM------- 383 (471)
Q Consensus 319 ~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~--------~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~------- 383 (471)
++++.+.+.......+++.++|.++..+|..+. ..++++++.++.++++++++.+.|++++|+.+
T Consensus 269 ~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~ 348 (427)
T 2hox_A 269 SVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSE 348 (427)
T ss_dssp HHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCE
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCcccccccccc
Confidence 999999998877777899999999999997521 02467788899999999999999998766553
Q ss_pred -------eCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-CCcEEEEeecCHHHHHHHH
Q 012095 384 -------SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-DTCIRISYAASLTTLQAAV 455 (471)
Q Consensus 384 -------~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~-~~~iRis~~~~~e~i~~~~ 455 (471)
..|++++|+|++++. +..++++.|+++.||.+.||..|+. +++||||++.++++|++++
T Consensus 349 ~~~~~~~~~p~~g~f~~~~~~~-------------~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~~~~~e~l~~~l 415 (427)
T 2hox_A 349 YCNYFRRMRPPSPSYAWVKCEW-------------EEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQLM 415 (427)
T ss_dssp EETTTTEEECCCCSEEEEEECS-------------GGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSSCHHHHHHHH
T ss_pred ccccccccCCCCceEEEEECCC-------------cHHHHHHHHHHHCCEEEcCCCccCCCCCEEEEEecCCHHHHHHHH
Confidence 356789999999974 3456788888667999999999986 7899999999999999999
Q ss_pred HHHHHHHHh
Q 012095 456 ERIKKGLLT 464 (471)
Q Consensus 456 ~~l~~~l~~ 464 (471)
++|++++++
T Consensus 416 ~~l~~~~~~ 424 (427)
T 2hox_A 416 YYLKDMVKA 424 (427)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhh
Confidence 999998854
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-44 Score=352.06 Aligned_cols=323 Identities=19% Similarity=0.273 Sum_probs=266.9
Q ss_pred hcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHH
Q 012095 92 QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 171 (471)
Q Consensus 92 ~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~ 171 (471)
...+++|+|+.|++++++|+.+.+++.+.... ..+| |..|..+||+++++++ | +++++|++|+|+++++..+
T Consensus 13 ~~~~~~i~l~~n~~~~~~~~~v~~a~~~~~~~-~~~y-~~~~~~~lr~~la~~~----~--~~~~~i~~t~G~~~~l~~~ 84 (337)
T 3p1t_A 13 RAAAQAVCLAFNENPEAVEPRVQAAIAAAAAR-INRY-PFDAEPRVMRKLAEHF----S--CPEDNLMLVRGIDECFDRI 84 (337)
T ss_dssp -CCCCCEECSSCCCCSCCCHHHHHHHHHHGGG-TTSC-CTTHHHHHHHHHHHHH----T--SCGGGEEEESHHHHHHHHH
T ss_pred cCCCCceEeeCCCCCCCCCHHHHHHHHHhhhh-hccC-CCCchHHHHHHHHHHh----C--cCHHHEEEeCCHHHHHHHH
Confidence 34567999999999999999999999987654 6678 6789999999999997 3 4678999999999999999
Q ss_pred HHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHH
Q 012095 172 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 251 (471)
Q Consensus 172 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~ 251 (471)
+..+ +||+|++++|+|.++...++..|++++.++++. +|.+|+++++++ .+++++++++||||||.+++.+
T Consensus 85 ~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~--~~~~~v~i~~p~nptG~~~~~~--- 155 (337)
T 3p1t_A 85 SAEF--SSMRFVTAWPGFDGYRARIAVSGLRHFEIGLTD--DLLLDPNDLAQV--SRDDCVVLANPSNPTGQALSAG--- 155 (337)
T ss_dssp HHHS--TTSEEEEESSSCSHHHHHHTTSCCEEEEECBCT--TSSBCHHHHTTC--CTTEEEEEESSCTTTCCCCCHH---
T ss_pred HHhc--CCCeEEEeCCCcHHHHHHHHHcCCEEEEecCCC--CCCCCHHHHHhh--cCCCEEEEeCCCCCCCCCCCHH---
Confidence 8887 999999999999999999999999999999863 577999999986 4688999999999999999954
Q ss_pred HHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcc
Q 012095 252 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 331 (471)
Q Consensus 252 ~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~ 331 (471)
++.++|+++ ++ +|+||+|.++.+.+.. . ....+++++++||||.+|++|+|+||+++++++++.+.+...
T Consensus 156 ~l~~l~~~~-~~-~ivDea~~~~~~~~~~--~----~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~-- 225 (337)
T 3p1t_A 156 ELDQLRQRA-GK-LLIDETYVDYSSFRAR--G----LAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAMKRKQW-- 225 (337)
T ss_dssp HHHHHHHHC-SE-EEEECTTGGGSSCSSS--C----CCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHHHHHHTTSC--
T ss_pred HHHHHHHhC-Cc-EEEECCChhhcccccc--c----cccCCCEEEEeeCchhccCcchheEEEEeCHHHHHHHHhhcC--
Confidence 556667788 77 5559999986543321 1 122578899999999999999999999999999998877543
Q ss_pred cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCC
Q 012095 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 411 (471)
Q Consensus 332 ~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~ 411 (471)
.++++.+.|.++.++|+. .+++.+.++++.++++.+.+.|+++ |+.+.+++++| +|+..+
T Consensus 226 ~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-~~~~~~-------------- 285 (337)
T 3p1t_A 226 FCNVGTLDLHALEAALDN----DRAREAHIAKTLAQRRRVADALRGL-GYRVASSEANF-VLVENA-------------- 285 (337)
T ss_dssp TTCSCHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCSSSE-EEEECT--------------
T ss_pred CCCCCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHHC-cCEECCCCCeE-EEEEcC--------------
Confidence 456889999999999874 4556677777888899999999988 88888777776 555554
Q ss_pred CHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012095 412 NSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLL 463 (471)
Q Consensus 412 ~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~ 463 (471)
+..++.+.|. ++||.+.||..|+.++++|+|++ ++++++++++.|+++++
T Consensus 286 ~~~~~~~~l~-~~gi~v~~g~~~~~~~~iRis~~-~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 286 AGERTLRFLR-ERGIQVKDAGQFGLHHHIRISIG-REEDNDRLLAALAEYSD 335 (337)
T ss_dssp TTHHHHHHHH-HTTEECEEGGGGTCCSEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHH-HCCeEEEECccCCCCCeEEEecC-CHHHHHHHHHHHHHHhh
Confidence 3346666655 45999999999998899999998 67888999988887653
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-44 Score=354.37 Aligned_cols=345 Identities=19% Similarity=0.306 Sum_probs=283.7
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcC---CCCCCCCCCCHHHHHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHK 144 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~ 144 (471)
+.+.+..++++..... ...|+++|+|+.|++++++|+.+.+++.+++.++ ..+| +..+..+||++++++
T Consensus 6 ~~~~~~~~~~~~~~~~-------~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y-~~~~~~~lr~~la~~ 77 (360)
T 3hdo_A 6 LRQNIASMKGYIPGYQ-------PPDIASWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIY-PSASSQKLREVAGEL 77 (360)
T ss_dssp CCHHHHHCCCCCCCCC-------CSCCTTSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSC-CCSSCHHHHHHHHHH
T ss_pred hHHHHHhcCCcCCCCC-------CccccceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcC-CCCchHHHHHHHHHH
Confidence 4555666655533110 0245679999999999999999999999998775 6678 455779999999999
Q ss_pred HHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhh
Q 012095 145 LKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESK 224 (471)
Q Consensus 145 ~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~ 224 (471)
+ | +++++|++|+|+++++..++++++++||+|++++|+|.++...++..|++++.++++. ++.+ +++++.
T Consensus 78 ~----g--~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~--~~~~--~~l~~~ 147 (360)
T 3hdo_A 78 Y----G--FDPSWIIMANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTG--DFRI--AGFPER 147 (360)
T ss_dssp H----T--CCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHHTCEEEEECBCT--TSSB--TTCCSS
T ss_pred h----C--cCcceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCC--CCCH--HHHHhh
Confidence 7 3 5788999999999999999999999999999999999999999999999999999864 3444 555444
Q ss_pred hccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCccc
Q 012095 225 LTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 304 (471)
Q Consensus 225 l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 304 (471)
+ +++++++++|+||||.+++ +++|.++|+++ +++||+||+|.++. +.....+ ....++++++.||||.+
T Consensus 148 ~--~~~~v~i~~p~nptG~~~~---~~~l~~l~~~~-~~~li~De~~~~~~--~~~~~~~---~~~~~~~i~~~s~sK~~ 216 (360)
T 3hdo_A 148 Y--EGKVFFLTTPNAPLGPSFP---LEYIDELARRC-AGMLVLDETYAEFA--ESNALEL---VRRHENVVVTRTLSKSY 216 (360)
T ss_dssp B--CSSEEEEESSCTTTCCCCC---HHHHHHHHHHB-SSEEEEECTTGGGS--SCCCTHH---HHHCSSEEEEEESTTTT
T ss_pred c--CCCEEEEeCCCCCCCCCcC---HHHHHHHHHHC-CCEEEEECChHhhC--CcchhHH---hccCCCEEEEecchHhh
Confidence 3 4678999999999999999 55667778899 99999999999863 2222222 12357899999999999
Q ss_pred CccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeee
Q 012095 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (471)
Q Consensus 305 g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~ 384 (471)
|++|+|+||+++++++++.+...... ++++.++|.++.++|+. .+++++.+++++++++++.+.|+++ |+.+.
T Consensus 217 g~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~ 289 (360)
T 3hdo_A 217 SLAGMRIGLAIARPEVIAALDKIRDH--YNLDRLAQAACVAALRD----QAYLSECCRRIRETREWFTTELRSI-GYDVI 289 (360)
T ss_dssp SCTTSCCEEEECCHHHHHHHHHHSCS--CCSCHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHHHHHHHHT-TCEEC
T ss_pred cCCccceeeEeeCHHHHHHHHHhCCC--CCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHC-CCEEc
Confidence 99999999999999999999887654 56899999999999985 6789999999999999999999988 88887
Q ss_pred CCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012095 385 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLL 463 (471)
Q Consensus 385 ~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~ 463 (471)
++.+ .|+|+.++.. +..++.+.|.++ ||.+.||..++.++++|++++ ++++++++++.|+++.+
T Consensus 290 ~~~~-~~~~~~~~~~------------~~~~l~~~l~~~-gi~v~~~~~~~~~~~iRis~~-~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 290 PSQG-NYLFATPPDR------------DGKRVYDGLYAR-KVLVRHFSDPLLAHGMRISIG-TREEMEQTLAALKEIGE 353 (360)
T ss_dssp CCSS-SEEEEECTTC------------CHHHHHHHHHHT-TEECBCCCSTTTTTSEEEECC-CHHHHHHHHHHHHHHHC
T ss_pred CCCc-cEEEEECCCC------------CHHHHHHHHHHC-CEEEEECCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHhc
Confidence 5554 5578887642 678899988765 999999887666789999998 77899999999988754
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-45 Score=366.58 Aligned_cols=362 Identities=15% Similarity=0.124 Sum_probs=287.0
Q ss_pred ccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCC---CC--CChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHH
Q 012095 70 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP---DF--DTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICH 143 (471)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~---~~--~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~ 143 (471)
.++..++++.+..+...... ..++++|+|+.|++ +. ++++.+.+++.+++.. ...+|++..|..++|+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~ 80 (394)
T 2ay1_A 3 GNLKPQAPDKILALMGEFRA--DPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGE 80 (394)
T ss_dssp GGCCCCCCCSHHHHHHHHHH--CCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHH
T ss_pred ccCccCCCccHHHHHHHHHh--CCCccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHH
Confidence 45677888887776655443 25678999999984 22 4568899999888764 45689888999999999999
Q ss_pred HHHHHhCCCCCCCcEEE--eCChHHHHHHHHHHhcC--CCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHH
Q 012095 144 KLKEENGLSYTPDQILV--SNGAKQSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPK 219 (471)
Q Consensus 144 ~~~~~~g~~~~~~~i~i--t~G~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e 219 (471)
++... .+++++|++ |+|+++++..+++.+.. +||+|++++|+|+++...++..|++++.++++.++++.+|++
T Consensus 81 ~~~~~---~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 157 (394)
T 2ay1_A 81 LILGD---GLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFE 157 (394)
T ss_dssp HHHGG---GCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHH
T ss_pred HHhCC---CCCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHH
Confidence 98422 236789999 99999999999887754 999999999999999999999999999999865456889999
Q ss_pred HHHhhhccC---CcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCC-CccccccCCCCCCceE
Q 012095 220 VLESKLTEK---SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA-THTSFASLPGMWERTL 295 (471)
Q Consensus 220 ~l~~~l~~~---~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~~i 295 (471)
++++++++. ++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.+++. ...++..+....++++
T Consensus 158 ~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i 236 (394)
T 2ay1_A 158 GMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKT-GALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVL 236 (394)
T ss_dssp HHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEE
T ss_pred HHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEecCccccccCcccchHHHHHHhhcCCCEE
Confidence 999998653 56667799999999999999999999999999 999999999999877531 1222332322246789
Q ss_pred EEecCCcccCccchhheeeEc---CHHHHHH----HHHHHhcccCCCChHHHHHHHHHHhccCC---ChHHHHHHHHHHH
Q 012095 296 TVNGFSKAFAMTGWRLGYIAG---PKHFVAA----CNKIQSQFTSGASSISQKAGVAALGLGYA---GGEVVSKMVKAFR 365 (471)
Q Consensus 296 ~~~S~SK~~g~~G~R~G~v~~---~~~~i~~----l~~~~~~~~~~~~~~~q~aa~~~L~~~~~---~~~~~~~~~~~~~ 365 (471)
+++||||.+|++|+|+||+++ ++++++. +.........++++++|.++.++|+.... ..+++++++++++
T Consensus 237 ~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~ 316 (394)
T 2ay1_A 237 IAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGML 316 (394)
T ss_dssp EEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 6765544 33333344455699999999999985200 0357889999999
Q ss_pred HHHHHHHHHhcCCC---CCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEE
Q 012095 366 ERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRI 442 (471)
Q Consensus 366 ~~r~~l~~~L~~~~---g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRi 442 (471)
++++++.+.|+++. ++++..|++|+|+|++++ ...+ ..+++++||.+.|| +|+
T Consensus 317 ~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~---------------~~~~-~~~l~~~gi~v~~~--------~Ri 372 (394)
T 2ay1_A 317 RLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGAT---------------PEQV-KRIKEEFGIYMVGD--------SRI 372 (394)
T ss_dssp HHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCC---------------HHHH-HHHHHHHCEECCTT--------CEE
T ss_pred HHHHHHHHHHHhcCCCCCeeEEcCCceEEEeeCCC---------------HHHH-HHHHHhCCEEecCC--------CeE
Confidence 99999999998863 478778888999998663 3344 44555569999885 599
Q ss_pred Eeec-CHHHHHHHHHHHHHH
Q 012095 443 SYAA-SLTTLQAAVERIKKG 461 (471)
Q Consensus 443 s~~~-~~e~i~~~~~~l~~~ 461 (471)
+++. +++++++++++|+++
T Consensus 373 s~~~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 373 NIAGLNDNTIPILARAIIEV 392 (394)
T ss_dssp EGGGCCTTTHHHHHHHHHHH
T ss_pred EeecCCHhhHHHHHHHHHHc
Confidence 9986 889999999999875
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-44 Score=355.71 Aligned_cols=327 Identities=16% Similarity=0.264 Sum_probs=266.5
Q ss_pred cCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHH
Q 012095 93 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 172 (471)
Q Consensus 93 ~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~ 172 (471)
.|+++|||+.|++++++|+.+.+++.+++ ....+|++..+ .+||+++++++ | +++++|++|+|+++++..++
T Consensus 13 ~g~~~id~~~~~~~~~~~~~v~~a~~~~~-~~~~~y~~~~~-~~lr~~la~~~----~--~~~~~i~~t~g~~~al~~~~ 84 (350)
T 3fkd_A 13 LSSEIVNFSTTVWTDGDKDHLEKHLVENL-NCIRHYPEPDA-GTLRQMLAKRN----S--VDNNAILVTNGPTAAFYQIA 84 (350)
T ss_dssp ---CCEECSCCSCCCSCCHHHHHHHHHTG-GGGGSCCCTTC-HHHHHHHHHHT----T--CCGGGEEEESHHHHHHHHHH
T ss_pred ccccEEEccCCCCCCCCCHHHHHHHHHhH-hHHhcCCCCcH-HHHHHHHHHHh----C--cCHHHEEEcCCHHHHHHHHH
Confidence 46789999999999999999999998877 44677866666 89999999986 3 57789999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecC-CCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHH
Q 012095 173 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPT-RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 251 (471)
Q Consensus 173 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~-~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~ 251 (471)
++++ ||+|++++|+|..+...++..|++++.+++ +.+++ +++ +++++|++++|+||||.+++.++++
T Consensus 85 ~~l~--gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~--~~~--------~~~~~v~i~~p~nptG~~~~~~~l~ 152 (350)
T 3fkd_A 85 QAFR--GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDIGE--ADF--------SNMDFCWLCNPNNPDGRLLQRTEIL 152 (350)
T ss_dssp HHTT--TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCGGG--SCC--------TTCSEEEEESSCTTTCCCCCHHHHH
T ss_pred HHHC--CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCcccc--Ccc--------CCCCEEEEeCCCCCcCCCCCHHHHH
Confidence 9887 999999999999999999999999999998 54344 333 5789999999999999999988888
Q ss_pred HHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcc
Q 012095 252 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 331 (471)
Q Consensus 252 ~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~ 331 (471)
+|+++|++ .+||+||+|.++.+++.... ..+. ..+++++++||||.+|++|+|+||+++++++++.+.....
T Consensus 153 ~l~~~~~~---~~li~Dea~~~~~~~~~~~~--~~~~-~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~-- 224 (350)
T 3fkd_A 153 RLLNDHPD---TTFVLDQSYVSFTTEEVIRP--ADIK-GRKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFST-- 224 (350)
T ss_dssp HHHHHCTT---SEEEEECTTTTSCSSCCCCG--GGGT-TCSSEEEEEESHHHHSCGGGCCEEEECCHHHHHHHHTTCC--
T ss_pred HHHHhCCC---CEEEEECchhhhccCcchhh--HHhh-cCCCEEEEecCchhccCcchheEeEEeCHHHHHHHHHhCC--
Confidence 87777654 39999999999877654222 2232 3688999999999999999999999999999999887654
Q ss_pred cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCC
Q 012095 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 411 (471)
Q Consensus 332 ~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~ 411 (471)
.++++.++|.++.++|+.. ..+.++.++.+ ++++.+.+.|++++|+.+.++. +.|+|++++..
T Consensus 225 ~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~-~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~~------------ 287 (350)
T 3fkd_A 225 PWAVNALAIEAAKFILIHP---AQFTLPIRKWQ-RNTVDFITALNRLDGVEVHPSG-TTFFLLRLKKG------------ 287 (350)
T ss_dssp TTCSCHHHHHHHHHHHHCT---TTTCCCHHHHH-HHHHHHHHHHHHSTTEEECCCS-SSEEEEEESSS------------
T ss_pred CCCCCHHHHHHHHHHHhCH---HHHHHHHHHHH-HHHHHHHHHHhcCCCcEECCCC-CcEEEEECCCC------------
Confidence 3468999999999999863 23444444444 8888999999888899887555 45578888752
Q ss_pred CHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHhh
Q 012095 412 NSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 412 ~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~l~~~ 465 (471)
+..++.+.|++++||.+.||..|+. ++++||+++ +.++++++++.|++++++.
T Consensus 288 ~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~-~~~~~~~l~~al~~~~~~~ 342 (350)
T 3fkd_A 288 TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ-RPAQNQLFIKALETFLEKY 342 (350)
T ss_dssp CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHHHHh
Confidence 6789999998856999999999875 689999998 5577888888888877654
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=340.99 Aligned_cols=314 Identities=21% Similarity=0.332 Sum_probs=259.8
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHH-cCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIR-EGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~-~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~ 174 (471)
++|+|+.|++++++|+.+.+++.+++. .+..+| +..+..++|+++++++++. ++++++|++|+|+++++..++++
T Consensus 20 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y-~~~~~~~lr~~la~~~~~~---~~~~~~v~~~~G~~~al~~~~~~ 95 (335)
T 1uu1_A 20 DKTYLALNENPFPFPEDLVDEVFRRLNSDALRIY-YDSPDEELIEKILSYLDTD---FLSKNNVSVGNGADEIIYVMMLM 95 (335)
T ss_dssp CSEEESSCCCSSCCCHHHHHHHHHTCCGGGGGSC-CCSSCHHHHHHHHHHHTCS---SCCGGGEEEESSHHHHHHHHHHH
T ss_pred cceECCCCCCCCCCCHHHHHHHHHHhhhhhhhcC-CCCchHHHHHHHHHHcCCC---CCCHHHEEEcCChHHHHHHHHHH
Confidence 589999999988889999999998773 335678 4457999999999998543 35678999999999999999988
Q ss_pred hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHH
Q 012095 175 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 254 (471)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~ 254 (471)
+ ||+|+++ |+|.++...++..|++++.+|++ ++|.+|++++ +++++|++++||||||.+++.+++++|+
T Consensus 96 ~---gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l-----~~~~~v~l~~p~nptG~~~~~~~l~~l~ 164 (335)
T 1uu1_A 96 F---DRSVFFP-PTYSCYRIFAKAVGAKFLEVPLT--KDLRIPEVNV-----GEGDVVFIPNPNNPTGHVFEREEIERIL 164 (335)
T ss_dssp S---SEEEECS-SSCHHHHHHHHHHTCEEEECCCC--TTSCCCCCCC-----CTTEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred h---CCcEEEC-CCcHHHHHHHHHcCCeEEEeccC--CCCCCCHHHc-----CCCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 7 8999999 99999999999999999999985 3467888877 5789999999999999999977666665
Q ss_pred HHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCC
Q 012095 255 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 334 (471)
Q Consensus 255 ~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~ 334 (471)
++ . + ++|+||+|.++.++ ++.......+++++++||||.+|++|+|+||+++++++++.+...... ++
T Consensus 165 ~~---~-~-~li~De~~~~~~~~-----~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~--~~ 232 (335)
T 1uu1_A 165 KT---G-A-FVALDEAYYEFHGE-----SYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRLP--FN 232 (335)
T ss_dssp HT---T-C-EEEEECTTHHHHCC-----CCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHSCT--TC
T ss_pred Hh---C-C-EEEEECcchhhcch-----hHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeCHHHHHHHHHhcCC--CC
Confidence 54 4 7 89999999986542 112221235789999999999999999999999999999998876544 47
Q ss_pred CChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHH
Q 012095 335 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSE 414 (471)
Q Consensus 335 ~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (471)
++.++|.++.++|+. .+++++.+++++++++++.+.|+++ |+.+. |.+++|+|++++.. +..
T Consensus 233 ~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~------------~~~ 294 (335)
T 1uu1_A 233 VSYVSQMFAKVALDH----REIFEERTKFIVEERERMKSALREM-GYRIT-DSRGNFVFVFMEKE------------EKE 294 (335)
T ss_dssp SCHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCCSSEEEEECCTH------------HHH
T ss_pred cCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHHC-CcEEc-CCCCeEEEEECCCC------------CHH
Confidence 899999999999985 5688899999999999999999987 77765 45567899998741 567
Q ss_pred HHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHH
Q 012095 415 SLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKG 461 (471)
Q Consensus 415 ~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~ 461 (471)
++.+.|.++ ||.+.|+ ++++|++++. .+++++++++|+++
T Consensus 295 ~~~~~l~~~-gi~v~~~-----~~~iRis~~~-~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 295 RLLEHLRTK-NVAVRSF-----REGVRITIGK-REENDMILRELEVF 334 (335)
T ss_dssp HHHHHHHHH-TEEEEEE-----TTEEEEECCC-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHC-CEEEEEC-----CCeEEEEeCC-HHHHHHHHHHHHhh
Confidence 889988875 9999982 4789999975 46799999988754
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=341.41 Aligned_cols=338 Identities=17% Similarity=0.190 Sum_probs=279.0
Q ss_pred cCCCeEEcCCCCC-CCCChHHHHHHHHHHHHcC---CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 93 AGVSVIRLAAGEP-DFDTPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 93 ~g~~~i~l~~g~~-~~~~p~~v~~a~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
.|+++|+|+.|++ ++++|+.+.+++.+++.+. ...|.+..|..++++++++++.+.+|. +++++|+|+++++
T Consensus 41 ~g~~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~----~~v~~~~ggt~a~ 116 (398)
T 3a2b_A 41 DGRRVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGK----EAAILFSTGFQSN 116 (398)
T ss_dssp TTEEEEECSCSCTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTC----SEEEEESSHHHHH
T ss_pred CCceEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC----CcEEEECCHHHHH
Confidence 4567999999998 6667889999999887652 234556778889999999999998884 5899999999999
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc----CCcEEEEcCCCCCcccC
Q 012095 169 LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE----KSRLLILCSPSNPTGSV 244 (471)
Q Consensus 169 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~----~~~~i~i~~p~NPtG~~ 244 (471)
..++++++++||.|++++|+|..+...++..|++++.+++ +|++++++++++ ++++|++++|+||||.+
T Consensus 117 ~~~~~~~~~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~ 189 (398)
T 3a2b_A 117 LGPLSCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGH-------NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDI 189 (398)
T ss_dssp HHHHHHSSCTTCEEEEETTCCHHHHHHHHHSSSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCB
T ss_pred HHHHHHHhCCCCEEEECCccCHHHHHHHHHcCCceEEeCC-------CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCc
Confidence 9999999999999999999999999999999999999986 489999999876 78999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCc-eEEEecCCcccCccchhheeeEcCHHHHHH
Q 012095 245 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER-TLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 323 (471)
Q Consensus 245 ~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~-~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~ 323 (471)
++ +++|.++|++| +++||+||+|..+.++.. ..++....+..++ +++++||||.++++| ||+++++++++.
T Consensus 190 ~~---~~~l~~~~~~~-~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~~~~~~~~~~ 261 (398)
T 3a2b_A 190 VN---LPELTSIANEF-DAAVMVDDAHSLGVIGHK-GAGTASHFGLNDDVDLIMGTFSKSLASLG---GFVAGDADVIDF 261 (398)
T ss_dssp CC---HHHHHHHHHHH-TCEEEEECTTTTTTSSGG-GCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEEECHHHHHH
T ss_pred cC---HHHHHHHHHHc-CcEEEEECCCcccccCCC-CCchHhhcCCCcCCeEEEecccccccCCC---cEEEeCHHHHHH
Confidence 99 89999999999 999999999998776421 1222222122245 699999999999778 999999999999
Q ss_pred HHHH-HhcccCCCChHHHH-HHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccC
Q 012095 324 CNKI-QSQFTSGASSISQK-AGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG 401 (471)
Q Consensus 324 l~~~-~~~~~~~~~~~~q~-aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~ 401 (471)
+... ......+.+.+.|. ++.++|+. .+++++++++++++++++.+.|+++ |+++..|. ++|+|+.++...
T Consensus 262 l~~~~~~~~~~~~~~~~~~a~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-g~~~~~~~~~~~- 334 (398)
T 3a2b_A 262 LKHNARSVMFSASMTPASVASTLKALEI----IQNEPEHIEKLWKNTDYAKAQLLDH-GFDLGATE-SPILPIFIRSNE- 334 (398)
T ss_dssp HHHHCHHHHSSBCCCHHHHHHHHHHHHH----HHHCTHHHHHHHHHHHHHHHHHHHT-TCCBCSCC-SSEEEEECCCHH-
T ss_pred HHHhcccceecCCCCHHHHHHHHHHHHH----HhhCHHHHHHHHHHHHHHHHHHHhc-CCCcCCCC-CCEEEEEcCCHH-
Confidence 8875 33334445666666 45677774 3456788999999999999999988 88887776 567899887421
Q ss_pred CcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeec--CHHHHHHHHHHHHHHHHhhCC
Q 012095 402 SEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 467 (471)
Q Consensus 402 ~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~---~~~iRis~~~--~~e~i~~~~~~l~~~l~~~~~ 467 (471)
+..++.++|+++ ||.+.||..|+. ++++|++++. +++++++++++|+++++++..
T Consensus 335 ----------~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~~~ 394 (398)
T 3a2b_A 335 ----------KTFWVTKMLQDD-GVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQAEV 394 (398)
T ss_dssp ----------HHHHHHHHHHHT-TEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHCC-
T ss_pred ----------HHHHHHHHHHHC-CcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHhCc
Confidence 567899999887 999999998863 4799999996 999999999999999987653
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-38 Score=320.11 Aligned_cols=335 Identities=16% Similarity=0.229 Sum_probs=264.5
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHcC-------CCCCCC--CCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCCh
Q 012095 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREG-------FTRYTP--NAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 164 (471)
Q Consensus 94 g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~-------~~~Y~~--~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~ 164 (471)
|+++|+|+.|.++ ++|+.+.+++.+++.+. ...|++ ..+..++++.+++++ |.. ++++|++|+|+
T Consensus 26 g~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~----~~~-~~~~v~~~~g~ 99 (420)
T 1t3i_A 26 GHPLVYLDNAATS-QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFI----NAR-SPREIVYTRNA 99 (420)
T ss_dssp TEECEECBTTTCC-CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHT----TCS-CGGGEEEESSH
T ss_pred CCceEEecCCccC-CCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHc----CCC-CCCeEEEcCCh
Confidence 3458999999998 67889999999888652 233433 356677888888775 421 56899999999
Q ss_pred HHHHHHHHHHh----cCCCCeEEEcCCCCCC----hHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcC
Q 012095 165 KQSILQAVLAV----CSPGDEVIIPAPFWVS----YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCS 236 (471)
Q Consensus 165 ~~al~~~~~~l----~~~gd~Vlv~~p~y~~----~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~ 236 (471)
++++..+++++ +++||+|++++|+|++ +...++..|++++.++++ .++.+|++++++++++++++|++++
T Consensus 100 t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~~~~v~~~~ 177 (420)
T 1t3i_A 100 TEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLD--EQESFDLEHFKTLLSEKTKLVTVVH 177 (420)
T ss_dssp HHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBC--TTSSBCHHHHHHHCCTTEEEEEEES
T ss_pred HHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccC--CCCCcCHHHHHHhhCCCceEEEEeC
Confidence 99999999999 8999999999999998 567778899999999986 4567999999999998999999999
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEc
Q 012095 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 316 (471)
Q Consensus 237 p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~ 316 (471)
|+||||.+++ +++|.++|++| +++||+||+|..+.. ...+.. .+.++++.||||.+|.+| +||+++
T Consensus 178 ~~nptG~~~~---l~~i~~l~~~~-~~~li~D~a~~~~~~----~~~~~~----~~~di~~~s~sK~~~~~g--~G~~~~ 243 (420)
T 1t3i_A 178 ISNTLGCVNP---AEEIAQLAHQA-GAKVLVDACQSAPHY----PLDVQL----IDCDWLVASGHKMCAPTG--IGFLYG 243 (420)
T ss_dssp BCTTTCBBCC---HHHHHHHHHHT-TCEEEEECTTTTTTS----CCCHHH----HTCSEEEEEGGGTTSCTT--CEEEEE
T ss_pred CcccccCcCC---HHHHHHHHHHc-CCEEEEEhhhccCCc----cCchhh----cCCCEEEEehhhhcCCCc--eEEEEE
Confidence 9999999999 89999999999 999999999986422 111211 245689999999988777 999999
Q ss_pred CHHHHHHHHHHHhc--------------------ccCCCChHHHHHHHH-HHhccCCChHHHHHHHHHHHHHHHHHHHHh
Q 012095 317 PKHFVAACNKIQSQ--------------------FTSGASSISQKAGVA-ALGLGYAGGEVVSKMVKAFRERRDFLVKSF 375 (471)
Q Consensus 317 ~~~~i~~l~~~~~~--------------------~~~~~~~~~q~aa~~-~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L 375 (471)
++++++.+...... +..+.+.+.+.++.. +++.. ...++++++++++++++++.+.|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L 321 (420)
T 1t3i_A 244 KEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYL--TDLGMENIHNYEVELTHYLWQGL 321 (420)
T ss_dssp CHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHH
Confidence 99998877654321 223566777776554 45431 02246788899999999999999
Q ss_pred cCCCCCeeeCCC------cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC--------CCCCcEE
Q 012095 376 GELEGVKMSEPQ------GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF--------GDDTCIR 441 (471)
Q Consensus 376 ~~~~g~~~~~p~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f--------~~~~~iR 441 (471)
++++|+++..|. ++++ ++.++.. +..++.+.|. +.||.+.||..| +.++++|
T Consensus 322 ~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~------------~~~~~~~~l~-~~gi~v~~~~~~~~~~~~~~g~~~~iR 387 (420)
T 1t3i_A 322 GQIPQLRLYGPNPKHGDRAALA-SFNVAGL------------HASDVATMVD-QDGIAIRSGHHCTQPLHRLFDASGSAR 387 (420)
T ss_dssp HTCTTEEEESCCGGGSCBCSEE-EEEETTB------------CHHHHHHHHH-TTTEECBCSCTTCHHHHHHTTCCCCEE
T ss_pred HhCCCeEEeCCCccccccCCEE-EEEECCC------------CHHHHHHHHH-HCCeEEeeccccchHHHHhcCCCCeEE
Confidence 998899887765 5665 4467632 5678887665 459999999643 4468999
Q ss_pred EEeec--CHHHHHHHHHHHHHHHHhhC
Q 012095 442 ISYAA--SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 442 is~~~--~~e~i~~~~~~l~~~l~~~~ 466 (471)
++++. +++++++++++|++++++++
T Consensus 388 is~~~~~~~~~i~~~~~~l~~~~~~~~ 414 (420)
T 1t3i_A 388 ASLYFYNTKEEIDLFLQSLQATIRFFS 414 (420)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHTC
T ss_pred EecCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99996 89999999999999988765
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=310.37 Aligned_cols=322 Identities=14% Similarity=0.164 Sum_probs=263.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCC
Q 012095 108 DTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187 (471)
Q Consensus 108 ~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p 187 (471)
+.++.+.+++.+.+. .+|++. ..++++.+++++.+.+|.+ +++++++|+|+++++..++++++++||+|++++|
T Consensus 30 ~~~~~v~~a~~~~~~---~~~~~~--~~~~~~~~~~~la~~~g~~-~~~~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~~ 103 (386)
T 2dr1_A 30 ACFPEVLEIMKVQMF---SHRSKE--YRKVHMDTVERLREFLEVE-KGEVLLVPSSGTGIMEASIRNGVSKGGKVLVTII 103 (386)
T ss_dssp CCCHHHHHHTTSCCC---CTTSHH--HHHHHHHHHHHHHHHHTCS-SSEEEEESSCHHHHHHHHHHHHSCTTCEEEEEES
T ss_pred CCcHHHHHHHhcccc---cccCHH--HHHHHHHHHHHHHHHhCCC-CCcEEEEeCChHHHHHHHHHHhhcCCCeEEEEcC
Confidence 346777777665432 356432 3789999999999999965 4678999999999999999999999999999999
Q ss_pred CCCC--hHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhh--ccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCe
Q 012095 188 FWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKL--TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL 263 (471)
Q Consensus 188 ~y~~--~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l--~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~ 263 (471)
+|++ +...++..|++++.++++. ++.+|+++|++++ .+++++|++++|+||||.+.+ +++|.++|++| ++
T Consensus 104 ~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~ 177 (386)
T 2dr1_A 104 GAFGKRYKEVVESNGRKAVVLEYEP--GKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNP---LPELAKVAKEH-DK 177 (386)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC---HHHHHHHHHHT-TC
T ss_pred CchhHHHHHHHHHhCCceEEEecCC--CCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCC---HHHHHHHHHHc-CC
Confidence 9998 8888999999999999864 4668999999999 468999999999999999998 89999999999 99
Q ss_pred EEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHH----------------HH
Q 012095 264 LVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN----------------KI 327 (471)
Q Consensus 264 ~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~----------------~~ 327 (471)
+||+||+|..+.+. .+ +. ..+.++++.||||.++.++ ++||+++++++++.+. ..
T Consensus 178 ~li~D~a~~~~~~~----~~---~~-~~~~di~~~s~sK~~~~~~-g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (386)
T 2dr1_A 178 LVFVDAVSAMGGAD----IK---FD-KWGLDVVFSSSQKAFGVPP-GLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYL 248 (386)
T ss_dssp EEEEECTTTBTTBC----CC---TT-TTTCSEEEEETTSTTCCCS-SCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHH
T ss_pred eEEEEccccccCcc----cc---cc-ccCCcEEEEeccccccCCC-ceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhh
Confidence 99999999875431 11 22 1356799999999998553 4999999999888762 22
Q ss_pred --HhcccCCCChHHHHHHHHHHhccCCChH--HHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC---cceEEeEecCCcc
Q 012095 328 --QSQFTSGASSISQKAGVAALGLGYAGGE--VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ---GAFYLFIDFSTYY 400 (471)
Q Consensus 328 --~~~~~~~~~~~~q~aa~~~L~~~~~~~~--~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~---~g~~~~~~~~~~~ 400 (471)
......+++.+.|.++.++|+. ..+ .+++++++++++++++.+.|+++ |+++..+. .+.++|++++..
T Consensus 249 ~~~~~~~~~~~~~~~~a~~~~l~~---~~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~- 323 (386)
T 2dr1_A 249 KEKESTPSTPPMPQVFGINVALRI---IEKMGGKEKWLEMYEKRAKMVREGVREI-GLDILAEPGHESPTITAVLTPPG- 323 (386)
T ss_dssp HHHSSCSSCCCHHHHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCTTCBCSSEEEEECCTT-
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCeeCcCccccCCceEEEEcCCC-
Confidence 1244557888999999888875 233 37888999999999999999988 88887765 366788888742
Q ss_pred CCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012095 401 GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~~ 466 (471)
.+..++.++|.++ ||.+.||..+..++++|++++. +++++++++++|++++++++
T Consensus 324 ----------~~~~~~~~~l~~~-gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 380 (386)
T 2dr1_A 324 ----------IKGDEVYEAMRKR-GFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVINELK 380 (386)
T ss_dssp ----------CCHHHHHHHHHHT-TEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------CCHHHHHHHHHHC-CeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 2678899999887 9999999877667899999994 99999999999999988764
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=312.04 Aligned_cols=335 Identities=16% Similarity=0.134 Sum_probs=257.8
Q ss_pred cCCCeEEcCCCCC-CCCChHHHHHHHHHHHHcCCC-----C--CCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCCh
Q 012095 93 AGVSVIRLAAGEP-DFDTPVLIAEAGINAIREGFT-----R--YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 164 (471)
Q Consensus 93 ~g~~~i~l~~g~~-~~~~p~~v~~a~~~~~~~~~~-----~--Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~ 164 (471)
.|+++|||+.|+| .+.+++.+.+++.+++.+... . |+...+..++++.+++++ |. +++|++++|
T Consensus 41 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----~~---~~~i~~~sG- 112 (399)
T 3tqx_A 41 GEKEVLNFCANNYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFL----GT---DDTILYSSC- 112 (399)
T ss_dssp TTEEEEECSSCCTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHH----TC---SEEEEESCH-
T ss_pred CCeeEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHH----CC---CcEEEECch-
Confidence 3567899999965 334578899999888765211 1 112223456666666654 52 346666655
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc------CCcEEEEcCCC
Q 012095 165 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPS 238 (471)
Q Consensus 165 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~------~~~~i~i~~p~ 238 (471)
++++..++++++++||.|+++.|+|..+...++..|++++.++. +|++++++.+++ ++++|++++|+
T Consensus 113 t~a~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~~~~~~ 185 (399)
T 3tqx_A 113 FDANGGLFETLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKN-------NAMGDLEAKLKEADEKGARFKLIATDGVF 185 (399)
T ss_dssp HHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHSCCSEEEEECT-------TCTTHHHHHHHHHHTTTCSSEEEEEESEE
T ss_pred HHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcCCceeEeCC-------CCHHHHHHHHHhhhccCCCceEEEEeCCC
Confidence 67899999999999999999999999999999999999999986 377888888865 78999999999
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccC-CCCCCceEEEecCCcccCccchhheeeEcC
Q 012095 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGP 317 (471)
Q Consensus 239 NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~-~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~ 317 (471)
||||.+++ +++|+++|++| +++||+||+|....++.... +.... ....+++++++||||.++ |.+.||++++
T Consensus 186 nptG~~~~---l~~i~~l~~~~-~~~li~De~~~~~~~~~~~~-~~~~~~~~~~~~di~~~s~sK~~~--g~~gG~~~~~ 258 (399)
T 3tqx_A 186 SMDGIIAD---LKSICDLADKY-NALVMVDDSHAVGFIGENGR-GTPEYCGVADRVDILTGTLGKALG--GASGGYTSGH 258 (399)
T ss_dssp TTTTEECC---HHHHHHHHHHT-TCEEEEECTTTTTTSSTTSC-CHHHHHTCTTCCSEEEEESSSSSC--SSCCEEEEEC
T ss_pred CCCCCcCC---HHHHHHHHHHc-CCEEEEECCccccccCCCCC-chHHhhCCCCCCcEEEecchHhcc--cCceEEEEcC
Confidence 99999999 99999999999 99999999997433332211 22222 111356699999999997 3444999999
Q ss_pred HHHHHHHHHHHhc--ccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEe
Q 012095 318 KHFVAACNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFID 395 (471)
Q Consensus 318 ~~~i~~l~~~~~~--~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~ 395 (471)
+++++.+...... +..+++++.+.++.++++. ..++.++++++++++++++.+.|+++ |+++.++.++| +|+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-~~~~ 333 (399)
T 3tqx_A 259 KEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLEL---LKTEGPQLRKQLQENSRYFRAGMEKL-GFQLVPGNHPI-IPVM 333 (399)
T ss_dssp HHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHH---HHHTHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSSSE-EEEE
T ss_pred HHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHH---HhhccHHHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCE-EEEE
Confidence 9999998876332 2446778888888888875 12668899999999999999999988 88887666665 7778
Q ss_pred cCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEee--cCHHHHHHHHHHHHHHHHhhC
Q 012095 396 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYA--ASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~---~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~ 466 (471)
++... +..+++++|+++ ||.+.|+..+.. ++++|++++ .+++++++++++|+++++++.
T Consensus 334 ~~~~~-----------~~~~~~~~l~~~-gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 397 (399)
T 3tqx_A 334 LGDAQ-----------LATNMADHLLQE-GIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKLG 397 (399)
T ss_dssp EECHH-----------HHHHHHHHHHHT-TEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred eCCHH-----------HHHHHHHHHHHC-CCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHHHhc
Confidence 76431 567899998885 999998765432 368999998 499999999999999998764
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=314.30 Aligned_cols=334 Identities=16% Similarity=0.220 Sum_probs=262.4
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHcCC---CC------CCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCCh
Q 012095 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGF---TR------YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 164 (471)
Q Consensus 94 g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~---~~------Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~ 164 (471)
|+++++|+.|.++ +.|+.+.+++.+++.+.. .. |.+..+..++++.+++++ |.. ++++|++|+|+
T Consensus 21 g~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~~~-~~~~v~~~~g~ 94 (406)
T 1kmj_A 21 GLPLAYLDSAASA-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFI----NAR-SAEELVFVRGT 94 (406)
T ss_dssp TEECEECCTTTCC-CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHT----TCS-CGGGEEEESSH
T ss_pred CCceEEecCCccC-CCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHc----CCC-CCCeEEEeCCh
Confidence 4568999999987 567889999999887532 11 123455667777777775 421 46899999999
Q ss_pred HHHHHHHHHHh----cCCCCeEEEcCCCCCCh----HHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcC
Q 012095 165 KQSILQAVLAV----CSPGDEVIIPAPFWVSY----PEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCS 236 (471)
Q Consensus 165 ~~al~~~~~~l----~~~gd~Vlv~~p~y~~~----~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~ 236 (471)
++++..+++++ +++||+|++++|+|++. ...++..|++++.++++. ++.+|+++|++++++++++|++++
T Consensus 95 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~l~~~~~~v~~~~ 172 (406)
T 1kmj_A 95 TEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNP--DGTLQLETLPTLFDEKTRLLAITH 172 (406)
T ss_dssp HHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCT--TSCBCGGGHHHHCCTTEEEEEEES
T ss_pred hHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCC--CCCcCHHHHHHHhccCCeEEEEeC
Confidence 99999999999 89999999999998764 345778899999999863 467899999999998999999999
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEc
Q 012095 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 316 (471)
Q Consensus 237 p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~ 316 (471)
|+||||.+++ +++|.++|++| +++||+||+|..+.. ...+.. .+.++++.||||.+|++| +||+++
T Consensus 173 ~~nptG~~~~---l~~i~~l~~~~-~~~li~D~~~~~g~~----~~~~~~----~~~d~~~~s~~K~~g~~G--~G~~~~ 238 (406)
T 1kmj_A 173 VSNVLGTENP---LAEMITLAHQH-GAKVLVDGAQAVMHH----PVDVQA----LDCDFYVFSGHKLYGPTG--IGILYV 238 (406)
T ss_dssp BCTTTCCBCC---HHHHHHHHHHT-TCEEEEECTTTTTTS----CCCHHH----HTCSEEEEEGGGTTSCTT--CEEEEE
T ss_pred CCccccCcCC---HHHHHHHHHHc-CCEEEEEchhhcCCC----CCcccc----cCCCEEEEEchhccCCCC--cEEEEE
Confidence 9999999999 99999999999 999999999986321 111111 246799999999998888 899999
Q ss_pred CHHHHHHHHHHHh---------------------cccCCCChHHHHHHH-HHHhccCCChHHHHHHHHHHHHHHHHHHHH
Q 012095 317 PKHFVAACNKIQS---------------------QFTSGASSISQKAGV-AALGLGYAGGEVVSKMVKAFRERRDFLVKS 374 (471)
Q Consensus 317 ~~~~i~~l~~~~~---------------------~~~~~~~~~~q~aa~-~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~ 374 (471)
++++++.+..... .+..+.+.+.+.++. ++++.. ...++++++++++++++++.+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~ 316 (406)
T 1kmj_A 239 KEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYV--SALGLNNIAEYEQNLMHYALSQ 316 (406)
T ss_dssp CHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHH--HHcCHHHHHHHHHHHHHHHHHH
Confidence 9999887754321 122345667776655 555531 1235778889999999999999
Q ss_pred hcCCCCCeeeCC--CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC--------CCCCcEEEEe
Q 012095 375 FGELEGVKMSEP--QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF--------GDDTCIRISY 444 (471)
Q Consensus 375 L~~~~g~~~~~p--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f--------~~~~~iRis~ 444 (471)
|++++|+++..+ .++++.| .++.. +..++.+.|.++ ||.+.||..| +.++++||++
T Consensus 317 L~~~~~~~~~~~~~~~~~~~~-~~~~~------------~~~~~~~~l~~~-gi~v~~g~~~~~~~~~~~g~~~~iRis~ 382 (406)
T 1kmj_A 317 LESVPDLTLYGPQNRLGVIAF-NLGKH------------HAYDVGSFLDNY-GIAVRTGHHCAMPLMAYYNVPAMCRASL 382 (406)
T ss_dssp HTTSTTEEEESCTTCCSEEEE-EETTC------------CHHHHHHHHHHT-TEECEEECTTCHHHHHHTTCSCEEEEEC
T ss_pred HhcCCCeEEecCCCcCCEEEE-EECCC------------CHHHHHHHHhhC-CcEEEeccccchHHHHhcCCCCeEEEEe
Confidence 999889998888 7887665 56532 577888877654 9999998753 4468999999
Q ss_pred ec--CHHHHHHHHHHHHHHHHhh
Q 012095 445 AA--SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 445 ~~--~~e~i~~~~~~l~~~l~~~ 465 (471)
+. ++++++++++.|+++++.+
T Consensus 383 ~~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 383 AMYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHHHhh
Confidence 97 8999999999999998765
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=315.05 Aligned_cols=315 Identities=17% Similarity=0.176 Sum_probs=242.8
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHH-----cCCCCCCCCCCCH---HHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 97 VIRLAAGEPDFDTPVLIAEAGINAIR-----EGFTRYTPNAGTL---ELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 97 ~i~l~~g~~~~~~p~~v~~a~~~~~~-----~~~~~Y~~~~G~~---~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..+++.|+|++.+|+.+.+++.++.. .+...|+. .|.+ +|++++++++ |. +++++++|+++++
T Consensus 20 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~l~~~ia~~~----g~----~~~i~~~~g~~ai 90 (404)
T 1e5e_A 20 DQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTR-LGNPTVSNLEGKIAFLE----KT----EACVATSSGMGAI 90 (404)
T ss_dssp CTTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTT-TCCHHHHHHHHHHHHHH----TC----SEEEEESSHHHHH
T ss_pred CCCCCcCCCCcCCCccccCCHHHHHHhhcCCcCCccccC-CcChHHHHHHHHHHHHh----CC----CcEEEeCChHHHH
Confidence 45689999999988776666655543 23456865 6666 7888888876 32 3788888889999
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChHH----HHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccC
Q 012095 169 LQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 244 (471)
Q Consensus 169 ~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~ 244 (471)
..++++++++||+|++++|+|.++.. .++..|++++.++.+ |++++++++++++++|++++|+||||.+
T Consensus 91 ~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~~~t~~v~l~~p~NptG~v 163 (404)
T 1e5e_A 91 AATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-------IPGEVKKHMKPNTKIVYFETPANPTLKI 163 (404)
T ss_dssp HHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-------STTHHHHHCCTTEEEEEEESSCTTTCCC
T ss_pred HHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-------CHHHHHHhcCCCCcEEEEECCCCCCCcc
Confidence 99999999999999999999999888 788899999999864 7889999998899999999999999999
Q ss_pred CCHHHHHHHHHHHHh-CCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhh-eeeEcCHHHHH
Q 012095 245 YPKNLLDEIARIVAK-HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVA 322 (471)
Q Consensus 245 ~~~~~l~~i~~l~~~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~-G~v~~~~~~i~ 322 (471)
++ +++|+++|++ | +++||+||+|..+.+.. ++ . .++++++.|+||.++++|+|+ ||+++++++++
T Consensus 164 ~~---l~~i~~la~~~~-~~~li~De~~~~~~~~~----~~-~----~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~ 230 (404)
T 1e5e_A 164 ID---MERVCKDAHSQE-GVLVIADNTFCSPMITN----PV-D----FGVDVVVHSATKYINGHTDVVAGLICGKADLLQ 230 (404)
T ss_dssp CC---HHHHHHHHHTST-TCEEEEECTTTCTTTCC----GG-G----GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHH
T ss_pred cC---HHHHHHHHHhhc-CCEEEEECCCchhhhCC----cc-c----cCCEEEEEcCccccCCCCCCeEEEEEECHHHHH
Confidence 98 9999999999 9 99999999999876531 11 1 357799999999999999998 99999999988
Q ss_pred -HHHHHHhcc-cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhc--------------CCCCCeeeCC
Q 012095 323 -ACNKIQSQF-TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG--------------ELEGVKMSEP 386 (471)
Q Consensus 323 -~l~~~~~~~-~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~--------------~~~g~~~~~p 386 (471)
.+......+ +.+.+++.|.++..+|+. ....++ +..++.+.+.+.++ ++||+++..+
T Consensus 231 ~~l~~~~~~~~g~~~~~~~~~~~~~~l~~---~~~~~~----~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~ 303 (404)
T 1e5e_A 231 QIRMVGIKDITGSVISPHDAWLITRGLST---LNIRMK----AESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKK 303 (404)
T ss_dssp HHHHTCCCCCCCCCCCHHHHHHHHHHHTT---HHHHHH----HHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhHhH---HHHHHH----HHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHh
Confidence 777766555 567889999998888874 122222 22333333333333 2345555444
Q ss_pred C----cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--------------------------
Q 012095 387 Q----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------------------------- 436 (471)
Q Consensus 387 ~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~-------------------------- 436 (471)
+ ++|+.| ++++ ..+.+..++++.|| +.+|..||.
T Consensus 304 ~~~~~g~~~~~-~~~~--------------~~~~~~~~l~~~~i-~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~ 367 (404)
T 1e5e_A 304 QMRMYGSMITF-ILKS--------------GFEGAKKLLDNLKL-ITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGI 367 (404)
T ss_dssp HCSSCCSEEEE-EETT--------------HHHHHHHHHHTCSS-SEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTC
T ss_pred hCCCCceEEEE-EeCC--------------CHHHHHHHHHhCCC-ceeccCCCCcceeeecccccccccCCHHHHHhcCC
Confidence 4 888777 7752 22345557777898 777765552
Q ss_pred -CCcEEEEeecCHHHHHHHHHHHHHHHHhh
Q 012095 437 -DTCIRISYAASLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 437 -~~~iRis~~~~~e~i~~~~~~l~~~l~~~ 465 (471)
++++|||++. |++++++++|+++++.+
T Consensus 368 ~~~~iRis~g~--e~~~~li~~l~~al~~~ 395 (404)
T 1e5e_A 368 TDGMIRLSVGI--EDADELIADFKQGLDAL 395 (404)
T ss_dssp CTTEEEEECCS--SCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCC--CCHHHHHHHHHHHHHHH
Confidence 5799999999 78888899998888764
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-37 Score=307.68 Aligned_cols=328 Identities=12% Similarity=0.094 Sum_probs=257.3
Q ss_pred cCCCeEEcCCCCC-CCCChHHHHHHHHHHHHc-CC----CCC--CCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCCh
Q 012095 93 AGVSVIRLAAGEP-DFDTPVLIAEAGINAIRE-GF----TRY--TPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 164 (471)
Q Consensus 93 ~g~~~i~l~~g~~-~~~~p~~v~~a~~~~~~~-~~----~~Y--~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~ 164 (471)
.|+++|||+.|++ ++++++.+.+++.+++.+ +. ..| +...+..++++.+++++ |. ++.|++++|
T Consensus 37 ~g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~---~~~i~~~sG- 108 (384)
T 1bs0_A 37 DDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL----GY---SRALLFISG- 108 (384)
T ss_dssp TTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH----TC---SEEEEESCH-
T ss_pred CCceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHh----CC---CcEEEeCCc-
Confidence 4667999999985 556688899999988865 21 223 34456778888888876 43 245555555
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccC---CcEEEEcCCCCCc
Q 012095 165 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK---SRLLILCSPSNPT 241 (471)
Q Consensus 165 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~---~~~i~i~~p~NPt 241 (471)
++++..++++++++||.|++++|+|..+...++..|++++.+|. .|++++++++++. +++|++++|||||
T Consensus 109 t~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~v~~~~~~npt 181 (384)
T 1bs0_A 109 FAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASPCPGQQMVVTEGVFSMD 181 (384)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSCCSSCEEEEEESBCTTT
T ss_pred HHHHHHHHHHhCCCCcEEEEcccccHHHHHHHHHcCCCEEEeCC-------CCHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence 89999999999999999999999999999999999999999984 4899999988653 6788889999999
Q ss_pred ccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHH
Q 012095 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 321 (471)
Q Consensus 242 G~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i 321 (471)
|.+++ +++|.++|++| +++||+||+|..+.++.........+. .+..++++||||.++++| ||++++++++
T Consensus 182 G~~~~---l~~i~~l~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~--~~~di~~~s~sK~~~~~G---G~~~~~~~~~ 252 (384)
T 1bs0_A 182 GDSAP---LAEIQQVTQQH-NGWLMVDDAHGTGVIGEQGRGSCWLQK--VKPELLVVTFGKGFGVSG---AAVLCSSTVA 252 (384)
T ss_dssp CCBCC---HHHHHHHHHHT-TCEEEEECTTTTTTSSGGGCCHHHHTT--CCCSEEEEESSSTTSSCC---EEEEECHHHH
T ss_pred CCccC---HHHHHHHHHHc-CcEEEEECCcccceecCCCCchHHhcC--CCCcEEEeeccchhhccC---cEEEeCHHHH
Confidence 99999 88999999999 999999999987655311111111122 123499999999999777 9999999999
Q ss_pred HHHHHHHhcc--cCCCChHHHHHHHHHHhccCCChH-HHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCC
Q 012095 322 AACNKIQSQF--TSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFST 398 (471)
Q Consensus 322 ~~l~~~~~~~--~~~~~~~~q~aa~~~L~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~ 398 (471)
+.+......+ +.+++++.+.++.++|+. ..+ +.++.+++++++++++.+.|+++ |+++.++ ++.++|+.++.
T Consensus 253 ~~l~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~~~~~~~~~~ 327 (384)
T 1bs0_A 253 DYLLQFARHLIYSTSMPPAQAQALRASLAV---IRSDEGDARREKLAALITRFRAGVQDL-PFTLADS-CSAIQPLIVGD 327 (384)
T ss_dssp HHHHHHCHHHHSSBCCCHHHHHHHHHHHHH---HHSHHHHHHHHHHHHHHHHHHHHHTTS-SCEECSC-CSSBCCEEEES
T ss_pred HHHHHhchhhhcCCCCCHHHHHHHHHHHHH---HhccccHHHHHHHHHHHHHHHHHHHhc-CCcccCC-CCCEEEEEeCC
Confidence 9887653222 335888999888888875 122 77889999999999999999998 8887654 45557888864
Q ss_pred ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeec--CHHHHHHHHHHHHHH
Q 012095 399 YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAA--SLTTLQAAVERIKKG 461 (471)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~---~~~iRis~~~--~~e~i~~~~~~l~~~ 461 (471)
.. +..++.++|+++ ||.+.||..|+. ++++|++++. +++++++++++|+++
T Consensus 328 ~~-----------~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 328 NS-----------RALQLAEKLRQQ-GCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp HH-----------HHHHHHHHHHHT-TEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred HH-----------HHHHHHHHHHHC-CcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 21 567899998876 999999988763 3689999996 899999999999864
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-37 Score=312.75 Aligned_cols=339 Identities=16% Similarity=0.165 Sum_probs=262.9
Q ss_pred cCCCeEEcCCCCC-CCCChHHHHHHHHHHHHc-C--CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 93 AGVSVIRLAAGEP-DFDTPVLIAEAGINAIRE-G--FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 93 ~g~~~i~l~~g~~-~~~~p~~v~~a~~~~~~~-~--~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
.|+++|+|+.|++ ++.+++.+.+++.+++.+ + ...|....|..++.+.+++.+.+.+|. ++.++++++++++
T Consensus 62 ~g~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g~----~~~i~~~sGs~a~ 137 (427)
T 2w8t_A 62 RGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGT----TGAIVFSTGYMAN 137 (427)
T ss_dssp TTEEEEECSCCCTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHTC----SEEEEESCHHHHH
T ss_pred CCceEEEEECcccccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhCC----CceEEecCcHHHH
Confidence 4677999999985 545678899999988865 3 233444455544444455555544563 2455556666788
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc----CCcEEEEcCCCCCcccC
Q 012095 169 LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE----KSRLLILCSPSNPTGSV 244 (471)
Q Consensus 169 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~----~~~~i~i~~p~NPtG~~ 244 (471)
..++.+++++||.|+++.|+|.++...++..|++++.++. +|+++|++++++ ++++|++++++||||.+
T Consensus 138 ~~al~~l~~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~ 210 (427)
T 2w8t_A 138 LGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRH-------NSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDI 210 (427)
T ss_dssp HHHHHHHSCTTCEEEEETTCCHHHHHHHHHSCSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEEEESEETTTTEE
T ss_pred HHHHHHhcCCCCEEEECCcccHHHHHHHHHcCCeeEEeCC-------CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCc
Confidence 8899999999999999999999999999999999998874 499999999876 78899999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCcccccc-CCCCCCceEEEecCCcccCccchhheeeEcCHHHHHH
Q 012095 245 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS-LPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 323 (471)
Q Consensus 245 ~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~-~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~ 323 (471)
++ +++|.++|++| |++||+||+|..+.++.... .+.. +....+.++++.||||.+|++| ||+++++++++.
T Consensus 211 ~~---l~~l~~l~~~~-g~~li~Dea~~~~~~~~~g~-~~~~~~~~~~~~di~~~s~sK~~g~~g---G~v~~~~~l~~~ 282 (427)
T 2w8t_A 211 AP---LKEMVAVAKKH-GAMVLVDEAHSMGFFGPNGR-GVYEAQGLEGQIDFVVGTFSKSVGTVG---GFVVSNHPKFEA 282 (427)
T ss_dssp CC---HHHHHHHHHHT-TCEEEEECTTTTTTSSTTSC-CHHHHTTCTTCCSEEEEESSSTTCSCC---EEEEECCTTGGG
T ss_pred cC---HHHHHHHHHHc-CCEEEEECCccccccCCCCC-chHhhcCCCcCCcEEEecchhhhccCC---CEEEeCHHHHHH
Confidence 99 99999999999 99999999999987753222 2222 2212356899999999999777 999999998887
Q ss_pred HHHHHh--cccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeee-CCCcceEEeEecCCcc
Q 012095 324 CNKIQS--QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDFSTYY 400 (471)
Q Consensus 324 l~~~~~--~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~-~p~~g~~~~~~~~~~~ 400 (471)
+..... .++.+.+++.+.++.++|+. .+.+++++++++++++++.+.|+++ |+.+. ++..+.++|+.+++.
T Consensus 283 l~~~~~~~~~~~~~~~~~~aa~~~al~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~- 356 (427)
T 2w8t_A 283 VRLACRPYIFTASLPPSVVATATTSIRK----LMTAHEKRERLWSNARALHGGLKAM-GFRLGTETCDSAIVAVMLEDQ- 356 (427)
T ss_dssp GGGTCHHHHSSCCCCHHHHHHHHHHHHH----HTSCHHHHHHHHHHHHHHHHHHHHH-TCEESCSSCCSSEEEEEESSH-
T ss_pred HHHhcccccccCCCCHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHc-CCcccCCCCCCCEEEEEECCH-
Confidence 765421 23445677777777778875 2235678889999999999999988 88876 451445688888742
Q ss_pred CCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCC---CcEEEEeec--CHHHHHHHHHHHHHHHHhhCC
Q 012095 401 GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD---TCIRISYAA--SLTTLQAAVERIKKGLLTLRP 467 (471)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~---~~iRis~~~--~~e~i~~~~~~l~~~l~~~~~ 467 (471)
.+..+++++|+++ ||.+.||..|+.+ +++|++++. +++++++++++|+++++++..
T Consensus 357 ----------~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~~~ 417 (427)
T 2w8t_A 357 ----------EQAAMMWQALLDG-GLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAVGV 417 (427)
T ss_dssp ----------HHHHHHHHHHHHT-TEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred ----------HHHHHHHHHHHHC-CeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCc
Confidence 1467899998887 9999999887643 589999997 999999999999999987653
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=313.22 Aligned_cols=320 Identities=14% Similarity=0.149 Sum_probs=260.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEc
Q 012095 107 FDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIP 185 (471)
Q Consensus 107 ~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~i~it~G~~~al~~~~~~l~~~gd~Vlv~ 185 (471)
.++|+.+.+++.+.+. ..|++ ...++++.+++++.+.+|. +++ +|++|+|+++++..++++++++||+|+++
T Consensus 43 ~~~~~~v~~a~~~~~~---~~~~~--~~~~~~~~~~~~la~~~g~--~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~ 115 (393)
T 1vjo_A 43 SNAHPSVLQAMNVSPV---GHLDP--AFLALMDEIQSLLRYVWQT--ENPLTIAVSGTGTAAMEATIANAVEPGDVVLIG 115 (393)
T ss_dssp CCCCHHHHHHHSSCCC---CTTSH--HHHHHHHHHHHHHHHHHTC--CCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCCCHHHHHHHhcccc---cccCH--HHHHHHHHHHHHHHHHhCC--CCCcEEEEeCchHHHHHHHHHhccCCCCEEEEE
Confidence 3557778887776542 25644 2568999999999999885 567 99999999999999999999999999999
Q ss_pred CCCCCC--hHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc-CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC
Q 012095 186 APFWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 262 (471)
Q Consensus 186 ~p~y~~--~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~-~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~ 262 (471)
+|+|.+ +...++..|++++.++++. ++.+|+++|++++++ ++++|++++|+||||.+++ +++|.++|++| +
T Consensus 116 ~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~ 189 (393)
T 1vjo_A 116 VAGYFGNRLVDMAGRYGADVRTISKPW--GEVFSLEELRTALETHRPAILALVHAETSTGARQP---LEGVGELCREF-G 189 (393)
T ss_dssp ESSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHH-T
T ss_pred cCChhHHHHHHHHHHcCCceEEEecCC--CCCCCHHHHHHHHhhCCceEEEEeccCCCcceecc---HHHHHHHHHHc-C
Confidence 999998 8889999999999999864 466899999999988 8999999999999999998 88999999999 9
Q ss_pred eEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHH----H----------
Q 012095 263 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI----Q---------- 328 (471)
Q Consensus 263 ~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~----~---------- 328 (471)
++||+||+|.. +.... .+. ..+..+++.|+||.++.+| |+||+++++++++.+... .
T Consensus 190 ~~li~Dea~~~----g~~~~---~~~-~~~~di~~~s~sK~l~~~~-~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (393)
T 1vjo_A 190 TLLLVDTVTSL----GGVPI---FLD-AWGVDLAYSCSQKGLGCSP-GASPFTMSSRAIEKLQRRRTKVANWYLDMNLLG 260 (393)
T ss_dssp CEEEEECTTTT----TTSCC---CTT-TTTCSEEECCSSSTTCSCS-SCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHH
T ss_pred CEEEEECCccc----cCcCC---ccc-ccCccEEEEcCcccccCCC-ceEEEEECHHHHHHHhccCCCCCceecCcHhhh
Confidence 99999999983 11111 222 2456799999999998777 999999999998877432 0
Q ss_pred -----hcccC-CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCc---ceEEeEecCCc
Q 012095 329 -----SQFTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG---AFYLFIDFSTY 399 (471)
Q Consensus 329 -----~~~~~-~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~---g~~~~~~~~~~ 399 (471)
..... +++.+.|.++.++|+.. .+.++++++++++++++++.+.|+++ |+++..|.+ +.++++.++..
T Consensus 261 ~~~~~~~~~~g~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~ 337 (393)
T 1vjo_A 261 KYWGSERVYHHTAPINLYYALREALRLI--AQEGLANCWQRHQKNVEYLWERLEDI-GLSLHVEKEYRLPTLTTVCIPDG 337 (393)
T ss_dssp HHHSTTCCCCSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCTT
T ss_pred hhhccCCCCCCCCCHHHHHHHHHHHHHH--HHccHHHHHHHHHHHHHHHHHHHHHc-CCcccCCccccCCcEEEEEcCCC
Confidence 01223 67889999999888751 12357889999999999999999988 888877765 34577777642
Q ss_pred cCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe-e--cCHHHHHHHHHHHHHHH
Q 012095 400 YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY-A--ASLTTLQAAVERIKKGL 462 (471)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~-~--~~~e~i~~~~~~l~~~l 462 (471)
.+..++.+.|++++||.+.||..|..++++|+++ + .+++++++++++|++++
T Consensus 338 -----------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 338 -----------VDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp -----------CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred -----------CCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 2678899998876699999999887789999994 3 37778999999999876
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=307.14 Aligned_cols=332 Identities=17% Similarity=0.166 Sum_probs=262.4
Q ss_pred cCCCeEEcCCCCCCCC--ChHHHHHHHHHHHHc-CCC----CCC--CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCC
Q 012095 93 AGVSVIRLAAGEPDFD--TPVLIAEAGINAIRE-GFT----RYT--PNAGTLELRSAICHKLKEENGLSYTPDQILVSNG 163 (471)
Q Consensus 93 ~g~~~i~l~~g~~~~~--~p~~v~~a~~~~~~~-~~~----~Y~--~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G 163 (471)
.|+++|||+.|.| ++ +++.+.+++.+++.. +.. .|. ...+..++++.+++++ |. + ++|++++|
T Consensus 43 ~g~~~id~~~~~~-~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~--~-~~i~~~sG 114 (401)
T 1fc4_A 43 DGSHVINFCANNY-LGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL----GM--E-DAILYSSC 114 (401)
T ss_dssp TSCEEEECCCSCT-TSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH----TC--S-EEEEESCH
T ss_pred CCccEEEeeccCc-ccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHh----CC--C-cEEEeCCh
Confidence 5778999999965 54 478899999988765 221 221 1455678888888876 43 3 56666655
Q ss_pred hHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc------CCcEEEEcCC
Q 012095 164 AKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSP 237 (471)
Q Consensus 164 ~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~------~~~~i~i~~p 237 (471)
++++..++++++++||.|+++.|+|..+...++..|++++.++. .|++++++++++ ++++|++++|
T Consensus 115 -s~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~~~~~ 186 (401)
T 1fc4_A 115 -FDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMQELEARLKEAREAGARHVLIATDGV 186 (401)
T ss_dssp -HHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECT-------TCHHHHHHHHHHHHHTTCSSEEEEEESE
T ss_pred -HHHHHHHHHHHcCCCCEEEEcchhHHHHHHHHHHcCCceEEECC-------CCHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 66888899999999999999999999888889999999998873 488999998865 7899999999
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCC-cccc-CCCCccccccCCCCCCceEEEecCCccc-Cccchhheee
Q 012095 238 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIY-APATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYI 314 (471)
Q Consensus 238 ~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~-~~~~-~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~R~G~v 314 (471)
+||||.+++ +++|.++|++| +++||+||+|. ++.+ .+....+...+. .+.+++++||||.+ |++| ||+
T Consensus 187 ~nptG~~~~---~~~i~~l~~~~-~~~li~De~~~~g~~~~~g~~~~~~~~~~--~~~di~~~s~sK~~~~~~g---G~~ 257 (401)
T 1fc4_A 187 FSMDGVIAN---LKGVCDLADKY-DALVMVDDSHAVGFVGENGRGSHEYCDVM--GRVDIITGTLGKALGGASG---GYT 257 (401)
T ss_dssp ETTTTEECC---HHHHHHHHHHT-TEEEEEECTTTTTTSSTTSCCHHHHTTCT--TCCSEEEEESSSTTCSSSC---EEE
T ss_pred cCCCCCCCC---HHHHHHHHHHc-CCEEEEECcccccccCCCCCccHHHcCCC--cCCcEEEecchhhccCCCC---EEE
Confidence 999999999 99999999999 99999999996 6653 333222223332 25679999999999 6565 999
Q ss_pred EcCHHHHHHHHHHHhc--ccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEE
Q 012095 315 AGPKHFVAACNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYL 392 (471)
Q Consensus 315 ~~~~~~i~~l~~~~~~--~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~ 392 (471)
++++++++.+...... ++.+++.+.+.++.++|+. .+..++.+++++++++++.+.|+++ |+++. +..++++
T Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~ 331 (401)
T 1fc4_A 258 AARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEM----VEAGSELRDRLWANARQFREQMSAA-GFTLA-GADHAII 331 (401)
T ss_dssp EECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHHHHT-TCCBC-CSSSSEE
T ss_pred EcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHc-CCccc-CCCCCEE
Confidence 9999999988875422 3557899999999988875 2224678888999999999999988 88877 4566678
Q ss_pred eEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCC---CcEEEEeec--CHHHHHHHHHHHHHHHHhhCC
Q 012095 393 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD---TCIRISYAA--SLTTLQAAVERIKKGLLTLRP 467 (471)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~---~~iRis~~~--~~e~i~~~~~~l~~~l~~~~~ 467 (471)
|+++++.. +..++.+.|.++ ||.+.+|..|+.+ +++|++++. +++++++++++|++++++++.
T Consensus 332 ~~~~~~~~-----------~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 399 (401)
T 1fc4_A 332 PVMLGDAV-----------VAQKFARELQKE-GIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLGV 399 (401)
T ss_dssp EEEEECHH-----------HHHHHHHHHHHT-TEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTTS
T ss_pred EEEcCChH-----------HHHHHHHHHHHC-CcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 88886421 467889988876 9999999887643 589999983 899999999999999988754
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-37 Score=307.66 Aligned_cols=330 Identities=18% Similarity=0.171 Sum_probs=252.9
Q ss_pred EEcCCCCCCCCChHHHHHHHHHHHHcCCCC--------CCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 98 IRLAAGEPDFDTPVLIAEAGINAIREGFTR--------YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 98 i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~--------Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
+.|..+.+. ++|+.+.+++.+++.+.... |.+..+..++++.+++++ | +++++|++|+|+++++.
T Consensus 3 ~yld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~~~g~t~a~~ 75 (384)
T 1eg5_A 3 VYFDNNATT-RVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVL----G--VSPSEIFFTSCATESIN 75 (384)
T ss_dssp EECBTTTCC-CCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHH----T--SCGGGEEEESCHHHHHH
T ss_pred EEEecCccC-CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHc----C--CCCCeEEEECCHHHHHH
Confidence 567777665 56889999999988752110 212344567777777776 4 46789999999999999
Q ss_pred HHHHHhc----CCCCeEEEcCCCCCChHHHH---HHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcc
Q 012095 170 QAVLAVC----SPGDEVIIPAPFWVSYPEMA---RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTG 242 (471)
Q Consensus 170 ~~~~~l~----~~gd~Vlv~~p~y~~~~~~~---~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG 242 (471)
.++++++ ++||+|++++|+|+++...+ +..|++++.++++. ++.+|+++|++++++++++|++++|+||||
T Consensus 76 ~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~nptG 153 (384)
T 1eg5_A 76 WILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS--RGVVKLEELEKLVDEDTFLVSIMAANNEVG 153 (384)
T ss_dssp HHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCT--TSCBCHHHHHHHCCTTEEEEEEESBCTTTC
T ss_pred HHHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCC--CCccCHHHHHHHhCCCCeEEEEECCCCCcc
Confidence 9999998 79999999999999887655 77899999999863 467999999999988899999999999999
Q ss_pred cCCCHHHHHHHHHHHHhCCC--eEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHH
Q 012095 243 SVYPKNLLDEIARIVAKHPR--LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 320 (471)
Q Consensus 243 ~~~~~~~l~~i~~l~~~~~~--~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~ 320 (471)
.+++ +++|.++|++| + ++||+||+|.. +. .... +.. .+.++++.|+||.+|++| +||+++++++
T Consensus 154 ~~~~---~~~i~~l~~~~-~~~~~li~Dea~~~---~~-~~~~---~~~-~~~di~~~s~sK~~g~~G--~G~~~~~~~~ 219 (384)
T 1eg5_A 154 TIQP---VEDVTRIVKKK-NKETLVHVDAVQTI---GK-IPFS---LEK-LEVDYASFSAHKFHGPKG--VGITYIRKGV 219 (384)
T ss_dssp BBCC---HHHHHHHHHHH-CTTCEEEEECTTTT---TT-SCCC---CTT-TCCSEEEEEGGGGTSCTT--CEEEEECTTS
T ss_pred cccC---HHHHHHHHHhc-CCceEEEEEhhhhc---CC-cccC---chh-cCCCEEEecHHHhcCCCc--eEEEEEcCCC
Confidence 9999 88999999999 8 99999999973 21 1112 222 256799999999999888 8999998875
Q ss_pred --HHHHHHH---HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC-c--ceEE
Q 012095 321 --VAACNKI---QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-G--AFYL 392 (471)
Q Consensus 321 --i~~l~~~---~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~-~--g~~~ 392 (471)
...+... ......+++.+.|.++.++|+. ..+++++++++++++++++.+.|++ +|+++..+. + +.++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~ 295 (384)
T 1eg5_A 220 PIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEI---AVEELSEAAKHMEKLRSKLVSGLMN-LGAHIITPLEISLPNTL 295 (384)
T ss_dssp CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHH---HHHTHHHHHHHHHHHHHHHHHHHHT-TTCEECSCTTSBCTTEE
T ss_pred ccccccccCcccccccCCCCChHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHhCC-CCeEEeCCcccCCCCEE
Confidence 2222111 1123456889999998888875 2467889999999999999999998 588886553 2 2346
Q ss_pred eEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------------------CCcEEEEee--cCHHHH
Q 012095 393 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------------------DTCIRISYA--ASLTTL 451 (471)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~-------------------~~~iRis~~--~~~e~i 451 (471)
++.+++. +..++.+.|.+ +||.+.+|..|+. ++++||+++ .+++++
T Consensus 296 ~~~~~~~------------~~~~~~~~l~~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i 362 (384)
T 1eg5_A 296 SVSFPNI------------RGSTLQNLLSG-YGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEV 362 (384)
T ss_dssp EEECTTC------------CHHHHHHHHHH-TTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHH
T ss_pred EEEeCCC------------CHHHHHHHHhh-CCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHH
Confidence 6666532 67789988765 5999999987743 368999999 489999
Q ss_pred HHHHHHHHHHHHhhCC
Q 012095 452 QAAVERIKKGLLTLRP 467 (471)
Q Consensus 452 ~~~~~~l~~~l~~~~~ 467 (471)
++++++|++++++++.
T Consensus 363 ~~~~~~l~~~~~~~~~ 378 (384)
T 1eg5_A 363 DYFLKKIEEILSFLDL 378 (384)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988754
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=312.64 Aligned_cols=335 Identities=15% Similarity=0.132 Sum_probs=257.3
Q ss_pred CCCeEEcCCCCC-CCCChHHHHHHHHHHHHc-CC------CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChH
Q 012095 94 GVSVIRLAAGEP-DFDTPVLIAEAGINAIRE-GF------TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165 (471)
Q Consensus 94 g~~~i~l~~g~~-~~~~p~~v~~a~~~~~~~-~~------~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~ 165 (471)
|++++++..|++ .+++++.+.+++.+++.+ +. ..|+...+..++|+.+++++ | .+++|++|+|++
T Consensus 45 g~~~i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~---~~~~i~~~sG~~ 117 (401)
T 2bwn_A 45 KQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLH----Q---KEAALVFSSAYN 117 (401)
T ss_dssp EEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHT----T---CSEEEEESCHHH
T ss_pred CCcEEEeeCCCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHh----C---CCcEEEECCcHH
Confidence 566899988876 565667899999988865 21 23445557788888888886 3 257888888877
Q ss_pred HHHHHHHHHhc--CCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc----cCCcEEEEcCCCC
Q 012095 166 QSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT----EKSRLLILCSPSN 239 (471)
Q Consensus 166 ~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~----~~~~~i~i~~p~N 239 (471)
++..++..++ .+||.|+++.|+|+++...++..|++++.++.+ |++++++.++ +++++|++++|+|
T Consensus 118 -a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~le~~l~~~~~~~~~~v~~~~~~n 189 (401)
T 2bwn_A 118 -ANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADDPAAPKLIAFESVYS 189 (401)
T ss_dssp -HHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSCTTSCEEEEEESBCT
T ss_pred -HHHHHHHHHhcCCCCCEEEECchhhHHHHHHHHHcCCeEEEEcCC-------CHHHHHHHHHhhccCCceEEEEecCcC
Confidence 6666666553 599999999999999999999999999999863 7888888876 5789999999999
Q ss_pred CcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHH
Q 012095 240 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH 319 (471)
Q Consensus 240 PtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~ 319 (471)
|||.+++ +++|+++|++| +++||+||+|..+.+++.+...+.......+.+++++||||.+|++| ||++++++
T Consensus 190 ptG~~~~---l~~i~~l~~~~-~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G---G~~~~~~~ 262 (401)
T 2bwn_A 190 MDGDFGP---IKEICDIAEEF-GALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG---GYIAASAR 262 (401)
T ss_dssp TTCCBCC---HHHHHHHHHHH-TCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC---EEEEECHH
T ss_pred CCCCcCC---HHHHHHHHHHc-CCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCCC---CEEecCHH
Confidence 9999999 89999999999 99999999999665543221111111111234699999999999888 99999999
Q ss_pred HHHHHHHHHhc--ccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecC
Q 012095 320 FVAACNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS 397 (471)
Q Consensus 320 ~i~~l~~~~~~--~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~ 397 (471)
+++.+...... +..+.+++.+.++.++++.. ....+++++++++++++++.+.|+++ |+++..+.++ ++|+.++
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~-~~~~~~~ 338 (401)
T 2bwn_A 263 MVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFL--KTAEGQKLRDAQQMHAKVLKMRLKAL-GMPIIDHGSH-IVPVVIG 338 (401)
T ss_dssp HHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSSS-CEEEECC
T ss_pred HHHHHHHhCcCceecCCCCHHHHHHHHHHHHHH--HhcccHHHHHHHHHHHHHHHHHHHHC-CCcccCCCCC-eEEEEeC
Confidence 99888754332 23345568888888888641 12235788899999999999999988 8888877777 5788886
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCC---CcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012095 398 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD---TCIRISYAA--SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~---~~iRis~~~--~~e~i~~~~~~l~~~l~~~ 465 (471)
... +..++.+.|++++||.+.|+..|+.+ +++|++++. +++++++++++|+++++++
T Consensus 339 ~~~-----------~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~~ 400 (401)
T 2bwn_A 339 DPV-----------HTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWARC 400 (401)
T ss_dssp CHH-----------HHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred ChH-----------HHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence 421 46788988875569999999887643 589999995 8999999999999987654
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=305.86 Aligned_cols=332 Identities=17% Similarity=0.125 Sum_probs=254.1
Q ss_pred cCCCeEEcCCCC-CCCCChHHHHHHHHHHHHcC---CCCCCCCCC----CHHHHHHHHHHHHHHhCCCCCCCcEEEeCCh
Q 012095 93 AGVSVIRLAAGE-PDFDTPVLIAEAGINAIREG---FTRYTPNAG----TLELRSAICHKLKEENGLSYTPDQILVSNGA 164 (471)
Q Consensus 93 ~g~~~i~l~~g~-~~~~~p~~v~~a~~~~~~~~---~~~Y~~~~G----~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~ 164 (471)
.|+.+|||+.++ .++++++.+.+++.+++.+. ...|....| ..++++.++++ +|. +..++++++
T Consensus 57 ~g~~~ld~~s~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~----~g~----~~~i~~~sG 128 (409)
T 3kki_A 57 ASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKF----TGF----DECLLSQSG 128 (409)
T ss_dssp CCTTSEECCCSCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHH----HTC----SEEEEESCH
T ss_pred CCCceEEeeccCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHH----hCC----CeEEEecch
Confidence 467799999887 44667899999999998762 222323334 44555555555 453 234455555
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc-CCcEEEEcCCCCCccc
Q 012095 165 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGS 243 (471)
Q Consensus 165 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~-~~~~i~i~~p~NPtG~ 243 (471)
++++..++++++++||.|++++|+|.++...++..|++++.++. .|+++|++++++ ++++|++++|+||||.
T Consensus 129 t~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~~~~~vi~~~~~nptG~ 201 (409)
T 3kki_A 129 WNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMH-------NNCDHLRMLIQRHGPGIIVVDSIYSTLGT 201 (409)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTTCEEEEECT-------TCHHHHHHHHHHHCSCEEEEESBCTTTCC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCcCHHHHHHHHHcCCeEEEecC-------CCHHHHHHHHHhcCCeEEEECCCCCCCCC
Confidence 79999999999999999999999999999999999999988874 489999999975 5899999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHH
Q 012095 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 323 (471)
Q Consensus 244 ~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~ 323 (471)
+++ +++|+++|++| |++||+||+|..+.++..............+..+++.||||.++++| ||+++++++++.
T Consensus 202 ~~~---l~~l~~la~~~-~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~g---g~v~~~~~~~~~ 274 (409)
T 3kki_A 202 IAP---LAELVNISKEF-GCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYRA---GAIWCNNEVNRC 274 (409)
T ss_dssp BCC---HHHHHHHHHHH-TCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEEESSSGGGT
T ss_pred cCC---HHHHHHHHHHc-CCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCCc---eEEEECHHHHHH
Confidence 999 99999999999 99999999999865543222111112222345699999999999665 999999999888
Q ss_pred HHHHHhc--ccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccC
Q 012095 324 CNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG 401 (471)
Q Consensus 324 l~~~~~~--~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~ 401 (471)
+...... +..+.+++.+.++.++++. .+..++++++++++++++.+.|+++ |+.+. .+++++|+.++...
T Consensus 275 ~~~~~~~~~~~~~~~~~~~aa~~aal~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~~~- 346 (409)
T 3kki_A 275 VPFISYPAIFSSTLLPYEAAGLETTLEI----IESADNRRQHLDRMARKLRIGLSQL-GLTIR--SESQIIGLETGDER- 346 (409)
T ss_dssp HHHHCHHHHHSBCCCHHHHHHHHHHHHH----HHHCHHHHHHHHHHHHHHHHHHHTT-TCCCC--CSSSEEEEEEESHH-
T ss_pred HHHhCcCccccCCCcHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHc-CCccC--CCCCEEEEEeCCHH-
Confidence 7764332 2334667777777777774 2333678889999999999999998 77765 35667888886431
Q ss_pred CcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012095 402 SEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAA--SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 402 ~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~---~~~iRis~~~--~~e~i~~~~~~l~~~l~~~ 465 (471)
+..++++.|+++ ||.+.|+..+.. ++++|++++. +++++++++++|+++++..
T Consensus 347 ----------~~~~~~~~L~~~-Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 404 (409)
T 3kki_A 347 ----------NTEKVRDYLESN-GVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNYG 404 (409)
T ss_dssp ----------HHHHHHHHHHHT-TEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred ----------HHHHHHHHHHHC-CceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhcC
Confidence 466789998887 999988664432 4699999985 8999999999999999764
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=305.70 Aligned_cols=328 Identities=18% Similarity=0.154 Sum_probs=253.8
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCC----C---CCCC-CCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGF----T---RYTP-NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~----~---~Y~~-~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~a 167 (471)
+.++|+.|.+. +.|+.+.+++.+++.... . .|.. ..+..++++.+++++ | +++++|++|+|++++
T Consensus 16 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~----g--~~~~~v~~~~g~t~a 88 (390)
T 1elu_A 16 NKTYFNFGGQG-ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETF----N--VDPNTITITDNVTTG 88 (390)
T ss_dssp TSEECCTTTCC-CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHT----T--SCGGGEEEESSHHHH
T ss_pred CeEEecCCccC-CCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHc----C--CCHHHEEEeCChHHH
Confidence 47899988754 457789999888776421 1 3422 256778888888875 4 466799999999999
Q ss_pred HHHHHHHh-cCCCCeEEEcCCCCCChHHH----HHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcc
Q 012095 168 ILQAVLAV-CSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTG 242 (471)
Q Consensus 168 l~~~~~~l-~~~gd~Vlv~~p~y~~~~~~----~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG 242 (471)
+..+++++ +++||+|++++|+|+++... ++..|++++.++++.++++.+|++.|++++++++++|++++|+||||
T Consensus 89 ~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG 168 (390)
T 1elu_A 89 CDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTG 168 (390)
T ss_dssp HHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTC
T ss_pred HHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCCCceEEEEeccccCCc
Confidence 99999999 89999999999999997653 56789999999986545678999999999988899999999999999
Q ss_pred cCCCHHHHHHHHHHHH----hCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCH
Q 012095 243 SVYPKNLLDEIARIVA----KHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 318 (471)
Q Consensus 243 ~~~~~~~l~~i~~l~~----~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~ 318 (471)
.+++ +++|.++|+ +| +++||+||+|... .... .+. ..+..+++.|+||.+. +|.++||+++++
T Consensus 169 ~~~~---~~~i~~l~~~~~~~~-~~~li~Dea~~~g----~~~~---~~~-~~~~d~~~~s~~K~~~-~~~g~G~~~~~~ 235 (390)
T 1elu_A 169 QVLP---LAEIMAVCRRHQGNY-PVRVLVDGAQSAG----SLPL---DFS-RLEVDYYAFTGHKWFA-GPAGVGGLYIHG 235 (390)
T ss_dssp CBCC---HHHHHHHHHHCCSSS-CCEEEEECTTTBT----TBCC---CTT-TSCCSEEEEESSSTTC-CCTTCEEEEECT
T ss_pred eecC---HHHHHHHHhhhhhhc-CcEEEEEcccccC----CcCC---Chh-hcCCCEEEcccccccc-CCCceEEEEECH
Confidence 9999 889999999 99 9999999999852 1111 121 1356699999999543 677899999999
Q ss_pred HHHHHHHHH----------------------HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhc
Q 012095 319 HFVAACNKI----------------------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 376 (471)
Q Consensus 319 ~~i~~l~~~----------------------~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~ 376 (471)
++++.+... ......+++.+.+.++.++++... ...++++++++++++++++.+.|+
T Consensus 236 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~-~~~~~~~~~~~~~~~~~~l~~~L~ 314 (390)
T 1elu_A 236 DCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQ-RQGTAEERYQAICQRSEFLWRGLN 314 (390)
T ss_dssp TTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHH
Confidence 888776532 111233466777777766665310 023488899999999999999999
Q ss_pred CCCCCeeeC---CCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHH
Q 012095 377 ELEGVKMSE---PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTL 451 (471)
Q Consensus 377 ~~~g~~~~~---p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~i 451 (471)
+++|+++.. +.++|+.| +++.. .+..++.++|.++ ||.+.+|. .++++||+++ .+++++
T Consensus 315 ~~~g~~~~~~~~~~~~~~~~-~~~~~-----------~~~~~~~~~l~~~-gi~v~~~~---~~~~iRis~~~~~~~~~i 378 (390)
T 1elu_A 315 QLPHVHCLATSAPQAGLVSF-TVDSP-----------LGHRAIVQKLEEQ-RIYLRTIA---DPDCIRACCHYITDEEEI 378 (390)
T ss_dssp HSTTEEESCSSCCSSSEEEE-EECSS-----------SCHHHHHHHHHHT-TEECEEET---TTTEEEEECCTTCCHHHH
T ss_pred hcCCcEEecCccccccEEEE-EcCCC-----------CCHHHHHHHHHHC-CEEEEecC---CCCeEEEecccCCCHHHH
Confidence 988888874 46777655 77632 2678899988655 99999986 3579999986 489999
Q ss_pred HHHHHHHHH
Q 012095 452 QAAVERIKK 460 (471)
Q Consensus 452 ~~~~~~l~~ 460 (471)
++++++|++
T Consensus 379 ~~~~~~l~~ 387 (390)
T 1elu_A 379 NHLLARLAD 387 (390)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999998865
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=310.49 Aligned_cols=326 Identities=12% Similarity=0.093 Sum_probs=251.7
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHcC---------CCCCCCCCCCHHHHHH-HHHHHHHHhCCCCCCCcEEEeCC
Q 012095 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREG---------FTRYTPNAGTLELRSA-ICHKLKEENGLSYTPDQILVSNG 163 (471)
Q Consensus 94 g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~---------~~~Y~~~~G~~~lr~~-ia~~~~~~~g~~~~~~~i~it~G 163 (471)
.+++++|..|.+..++|+.+.+++.+.+... ...|.+..+..++++. +++++ |. + +|++|+|
T Consensus 6 ~~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~----~~--~--~v~~~~g 77 (371)
T 2e7j_A 6 TKDFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFL----GC--D--VARVTNG 77 (371)
T ss_dssp --CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHT----TS--S--EEEEESS
T ss_pred CCCcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHc----CC--C--EEEEeCC
Confidence 3468999998877778899999998877542 1235577888999999 99886 32 2 9999999
Q ss_pred hHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEec--CCCCCCCcCCHHHHHhhhc-----cCCcEEEEcC
Q 012095 164 AKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILP--TRISENFLLDPKVLESKLT-----EKSRLLILCS 236 (471)
Q Consensus 164 ~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~--~~~~~~~~ld~e~l~~~l~-----~~~~~i~i~~ 236 (471)
+++++..++++++++||+|++++|+|+++...++..|++++.++ ++ .++.+|+++|+++++ +++++|++++
T Consensus 78 ~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~ 155 (371)
T 2e7j_A 78 AREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDY--PDYAITPENFAQTIEETKKRGEVVLALITY 155 (371)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCT--TTCCCCHHHHHHHHHHHTTTSCEEEEEEES
T ss_pred hHHHHHHHHHHHhCCCCEEEEccCcchHHHHHHHHcCCeEEEeecccC--CCCCcCHHHHHHHHHhhcccCCeEEEEEEC
Confidence 99999999999999999999999999999999999999999999 64 347799999999997 6889999999
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEc
Q 012095 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 316 (471)
Q Consensus 237 p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~ 316 (471)
|+||||.+++ +++|.++|++| |++||+||+|..+... ..+..+ +..+++.||||.++ +|.|+||+++
T Consensus 156 ~~nptG~~~~---~~~i~~~~~~~-~~~li~D~a~~~~~~~----~~~~~~----~~di~~~s~sK~~~-~~~~~G~~~~ 222 (371)
T 2e7j_A 156 PDGNYGNLPD---VKKIAKVCSEY-DVPLLVNGAYAIGRMP----VSLKEI----GADFIVGSGHKSMA-ASGPIGVMGM 222 (371)
T ss_dssp SCTTTCCCCC---HHHHHHHHHTT-TCCEEEECTTTBTTBC----CCHHHH----TCSEEEEEHHHHSS-CCSSCEEEEE
T ss_pred CCCCCcccCC---HHHHHHHHHHc-CCeEEEECccccCCCC----CChhhc----CCCEEEecCCcCCC-CCCCcEEEEE
Confidence 9999999999 79999999999 9999999999975431 122222 34499999999998 4569999999
Q ss_pred CHHHHHH-HHHHHh--cc-----cCCCChHHHHHHHHHHhccCCChHHHHHHHHHH--HHHHHHHHHHhcCCCCCeeeCC
Q 012095 317 PKHFVAA-CNKIQS--QF-----TSGASSISQKAGVAALGLGYAGGEVVSKMVKAF--RERRDFLVKSFGELEGVKMSEP 386 (471)
Q Consensus 317 ~~~~i~~-l~~~~~--~~-----~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~--~~~r~~l~~~L~~~~g~~~~~p 386 (471)
++++++. +..... .. ..+++...+.++.++++. ... +..+++ +++++++.+.|+++ |+++..|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~---~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~ 295 (371)
T 2e7j_A 223 KEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPH---VRE---RIKRWDEEVEKARRFAAEMEKL-GIKQLGD 295 (371)
T ss_dssp CTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHH---HHH---HGGGHHHHHHHHHHHHHHHHHT-TCEEESS
T ss_pred echhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHHHHHHHHc-CcEEecC
Confidence 9988776 654332 11 234556656666666653 111 566677 88899999999888 8888766
Q ss_pred C--cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC------CCcEE-EEee---cCHHHHHHH
Q 012095 387 Q--GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD------DTCIR-ISYA---ASLTTLQAA 454 (471)
Q Consensus 387 ~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~------~~~iR-is~~---~~~e~i~~~ 454 (471)
. .+.++|++++ +..++.+.|. ++||.+.| ..|.. ++++| ++++ .++++++++
T Consensus 296 ~~~~~~~~~~~~~--------------~~~~~~~~l~-~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~ 359 (371)
T 2e7j_A 296 NPHNHDLMFFHAE--------------VLYEISKKAK-GGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYV 359 (371)
T ss_dssp SSCCSSEEEEECH--------------HHHHHHHHSS-SGGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCCHHHHHHH
T ss_pred CCccCceEEEECC--------------CHHHHHHHHH-HCCEEEEe-ccccccccCCCCCceEEEEeeccCCCHHHHHHH
Confidence 3 2446888875 2567888877 45999988 43322 67999 9999 589999999
Q ss_pred HHHHHHHHHhh
Q 012095 455 VERIKKGLLTL 465 (471)
Q Consensus 455 ~~~l~~~l~~~ 465 (471)
+++|+++++++
T Consensus 360 ~~~l~~~~~~~ 370 (371)
T 2e7j_A 360 LNAFKEIIEKY 370 (371)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 99999998765
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-36 Score=301.12 Aligned_cols=332 Identities=14% Similarity=0.147 Sum_probs=253.5
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCC--CCCCHHHHHHHHHHHHHHhCCCCCCC-cEEEeCChHHHHHHHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP--NAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAV 172 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~--~~G~~~lr~~ia~~~~~~~g~~~~~~-~i~it~G~~~al~~~~ 172 (471)
..+.+..|. +++|+.+.+++.+++.. .|.+ ..+..++++.++++ +|. +++ +|++|+|+++++..++
T Consensus 19 ~~~~~~~g~--~~~~~~v~~a~~~~~~~---~~~~~~~~~~~~l~~~la~~----~g~--~~~~~i~~~~g~t~a~~~~~ 87 (393)
T 2huf_A 19 NKLLMGPGP--SNAPQRVLDAMSRPILG---HLHPETLKIMDDIKEGVRYL----FQT--NNIATFCLSASGHGGMEATL 87 (393)
T ss_dssp CCEECSSSC--CCCCHHHHHHTTSCCCC---TTSHHHHHHHHHHHHHHHHH----HTC--CCSEEEEESSCHHHHHHHHH
T ss_pred CeEEecCCC--CCCCHHHHHHHHhhhcc---CCCHHHHHHHHHHHHHHHHH----hCC--CCCcEEEEcCcHHHHHHHHH
Confidence 456666663 55678888887765432 3432 23445566666655 453 454 8999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChH--HHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc-CCcEEEEcCCCCCcccCCCHHH
Q 012095 173 LAVCSPGDEVIIPAPFWVSYP--EMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNL 249 (471)
Q Consensus 173 ~~l~~~gd~Vlv~~p~y~~~~--~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~-~~~~i~i~~p~NPtG~~~~~~~ 249 (471)
++++++||+|++++|+|+++. ..++..|++++.++++. ++.+|++++++++++ ++++|++++|+||||.+++
T Consensus 88 ~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~--- 162 (393)
T 2huf_A 88 CNLLEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSKV--GQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQG--- 162 (393)
T ss_dssp HHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---
T ss_pred HHHhCCCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCC--CCCCCHHHHHHHHhccCCcEEEEEccCCCccccCC---
Confidence 999999999999999998743 34566899999999864 356899999999987 8999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcc-cCccchhheeeEcCHHHHHHHHHHH
Q 012095 250 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA-FAMTGWRLGYIAGPKHFVAACNKIQ 328 (471)
Q Consensus 250 l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~g~~G~R~G~v~~~~~~i~~l~~~~ 328 (471)
+++|.++|++| +++||+||+|... .... .+. ..+..+++.|+||. +|++|+ ||+++++++++.+....
T Consensus 163 l~~i~~~~~~~-~~~li~D~a~~~~----~~~~---~~~-~~~~d~~~~s~sK~l~g~~G~--G~~~~~~~~~~~~~~~~ 231 (393)
T 2huf_A 163 LEGVGALCHQH-NCLLIVDTVASLG----GAPM---FMD-RWEIDAMYTGSQKVLGAPPGI--TPVSFSHRAVERYKRRN 231 (393)
T ss_dssp CTTHHHHHHHT-TCEEEEECTTTBT----TBCC---CTT-TTTCSEEECCSSSTTCCCSSC--EEEEECHHHHHHHHTCS
T ss_pred HHHHHHHHHHc-CCEEEEEcccccC----CCCc---chh-hcCccEEEECCCcccccCCCe--EEEEECHHHHHHHhhcC
Confidence 88999999999 9999999998642 1111 122 13567999999997 467786 99999999998876541
Q ss_pred ---hc--------------------ccCCCChHHHHHHHHHHhccCCChH-HHHHHHHHHHHHHHHHHHHhcCCCCCeee
Q 012095 329 ---SQ--------------------FTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (471)
Q Consensus 329 ---~~--------------------~~~~~~~~~q~aa~~~L~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~g~~~~ 384 (471)
.. ...+++...+.++.++++. ..+ .+++.+++++++++++.+.|+++ |+++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 307 (393)
T 2huf_A 232 TKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAM---ACEEGLPALIARHEDCAKRLYRGLQDA-GFELY 307 (393)
T ss_dssp SCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBS
T ss_pred CCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHH---HHHhCHHHHHHHHHHHHHHHHHHHHHc-CCeec
Confidence 01 1124566666666667764 223 37888899999999999999988 88877
Q ss_pred CCC---cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe-e--cCHHHHHHHHHHH
Q 012095 385 EPQ---GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY-A--ASLTTLQAAVERI 458 (471)
Q Consensus 385 ~p~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~-~--~~~e~i~~~~~~l 458 (471)
.+. ++++++++++.. .+..++.++|++++||.+.+|..|..++++|+++ + .+++++++++++|
T Consensus 308 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l 376 (393)
T 2huf_A 308 ADPKDRLSTVTTIKVPQG-----------VDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVF 376 (393)
T ss_dssp SCGGGBCTTEEEEECCTT-----------CCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHH
T ss_pred cCccccCCcEEEEEcCCC-----------CCHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHH
Confidence 663 355678888632 2678899998876799999998877778999999 5 2688999999999
Q ss_pred HHHHHhhCCCC
Q 012095 459 KKGLLTLRPGV 469 (471)
Q Consensus 459 ~~~l~~~~~~~ 469 (471)
++++++++.++
T Consensus 377 ~~~~~~~~~~~ 387 (393)
T 2huf_A 377 QEAVAAVKPDV 387 (393)
T ss_dssp HHHHHHHCC--
T ss_pred HHHHHHcCCCc
Confidence 99999887654
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-37 Score=310.29 Aligned_cols=348 Identities=11% Similarity=0.080 Sum_probs=251.7
Q ss_pred cCCCeEEcCCCCC--CCC-ChHHHHHHHHHHHHcCC---CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHH
Q 012095 93 AGVSVIRLAAGEP--DFD-TPVLIAEAGINAIREGF---TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (471)
Q Consensus 93 ~g~~~i~l~~g~~--~~~-~p~~v~~a~~~~~~~~~---~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~ 166 (471)
.|+.+||++.|.+ +++ +++.+.+++.+++.... ..|++..+..+|++.|++++. | + .+++|++|+|+++
T Consensus 39 ~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~---~-~-~~~~v~~~~g~~~ 113 (426)
T 1sff_A 39 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVP---G-D-FAKKTLLVTTGSE 113 (426)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSS---C-S-SCEEEEEESSHHH
T ss_pred CCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCC---c-c-cccEEEEeCchHH
Confidence 4677999998874 444 57889999999876532 246677888999999999862 3 2 3489999999999
Q ss_pred HHHHHHH---HhcCCCCeEEEcCCCCCChH-HHHHHcCCE-------------EEEecCCC---CCCCcCCHHHHHhhhc
Q 012095 167 SILQAVL---AVCSPGDEVIIPAPFWVSYP-EMARIADAT-------------PVILPTRI---SENFLLDPKVLESKLT 226 (471)
Q Consensus 167 al~~~~~---~l~~~gd~Vlv~~p~y~~~~-~~~~~~G~~-------------~~~v~~~~---~~~~~ld~e~l~~~l~ 226 (471)
++..+++ .++++| .|++++|+|+++. ..+...|.+ ++.++++. ..++.+|+++|+++++
T Consensus 114 a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~ 192 (426)
T 1sff_A 114 AVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFK 192 (426)
T ss_dssp HHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHH
Confidence 9999988 677777 8999999998765 456666653 66777653 1234579999999886
Q ss_pred -----cCCcEEEE-cCCCCCcc-cCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEec
Q 012095 227 -----EKSRLLIL-CSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 299 (471)
Q Consensus 227 -----~~~~~i~i-~~p~NPtG-~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S 299 (471)
+++++|++ ++++| || .+++++++++|.++|++| +++||+||+|.++.+.+.. ..+ .. .+..+.+.|
T Consensus 193 ~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~-~~~li~De~~~~~~~~g~~-~~~-~~---~~~~~di~s 265 (426)
T 1sff_A 193 NDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEH-GIMLIADEVQSGAGRTGTL-FAM-EQ---MGVAPDLTT 265 (426)
T ss_dssp HTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGG-GG---TTSCCSEEE
T ss_pred hccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHc-CCEEEEechhhccCcccch-hhh-hh---cCCCCCEEE
Confidence 45677766 45688 99 889999999999999999 9999999999987655421 111 11 122233559
Q ss_pred CCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC--
Q 012095 300 FSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-- 377 (471)
Q Consensus 300 ~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-- 377 (471)
|||.++. |+|+||+++++++++.+.......+++.++++|.++.++|+.. .+ ....++++++++++.+.|++
T Consensus 266 ~sK~~~~-GlriG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~---~~--~~~~~~~~~~~~~l~~~l~~~~ 339 (426)
T 1sff_A 266 FAKSIAG-GFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVF---EQ--ENLLQKANDLGQKLKDGLLAIA 339 (426)
T ss_dssp ECGGGGT-SSCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHH---HH--TTHHHHHHHHHHHHHHHHHHHH
T ss_pred EcccccC-CCceEEEEEcHHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHH---Hh--cCHHHHHHHHHHHHHHHHHHHH
Confidence 9999995 9999999999998887764334456678999999999888641 11 12344555556666555544
Q ss_pred --CCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHH
Q 012095 378 --LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQA 453 (471)
Q Consensus 378 --~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~i~~ 453 (471)
++.+....+. |+|+|++++........ ...+..++++.|+++ ||.+.||..| ++++|++++ .+++++++
T Consensus 340 ~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~---~~~~~~~l~~~l~~~-gi~v~~~~~~--~~~iRi~~~~~~~~~~i~~ 412 (426)
T 1sff_A 340 EKHPEIGDVRGL-GAMIAIELFEDGDHNKP---DAKLTAEIVARARDK-GLILLSCGPY--YNVLRILVPLTIEDAQIRQ 412 (426)
T ss_dssp HTCTTEEEEEEE-TTEEEEEEBGGGCTTSB---CHHHHHHHHHHHHHT-TEECEEESTT--SCEEEECCCTTCCHHHHHH
T ss_pred HhCCCeEEEEEE-EEEEEEEEecCccccCC---ChHHHHHHHHHHHHC-CcEEecCCCC--CCEEEEECCccCCHHHHHH
Confidence 3334444455 56789988531000000 001467788888875 9999998864 679999986 39999999
Q ss_pred HHHHHHHHHHhhC
Q 012095 454 AVERIKKGLLTLR 466 (471)
Q Consensus 454 ~~~~l~~~l~~~~ 466 (471)
++++|++++++++
T Consensus 413 ~~~~l~~~l~~~~ 425 (426)
T 1sff_A 413 GLEIISQCFDEAK 425 (426)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=303.69 Aligned_cols=330 Identities=14% Similarity=0.137 Sum_probs=255.6
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHcCCCCCCCC--CCCHHHHHHHHHHHHHHhCCCCCCC-cEEEeCChHHHHHHHHHHhc
Q 012095 100 LAAGEPDFDTPVLIAEAGINAIREGFTRYTPN--AGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVC 176 (471)
Q Consensus 100 l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~--~G~~~lr~~ia~~~~~~~g~~~~~~-~i~it~G~~~al~~~~~~l~ 176 (471)
+..+.++.++++.+.+++.+.+. .+|.+. ....++|+.+++++ | .+++ +|++|+|+++++..++++++
T Consensus 20 ~~~~~~p~~~~~~v~~a~~~~~~---~~~~~~~~~~~~~l~~~la~~~----~--~~~~~~v~~~~g~t~al~~~~~~~~ 90 (396)
T 2ch1_A 20 IMMGPGPSNCSKRVLTAMTNTVL---SNFHAELFRTMDEVKDGLRYIF----Q--TENRATMCVSGSAHAGMEAMLSNLL 90 (396)
T ss_dssp BCCSSSSCCCCHHHHHHTTSCCC---CTTCHHHHHHHHHHHHHHHHHH----T--CCCSCEEEESSCHHHHHHHHHHHHC
T ss_pred eeecCCCCCCCHHHHHHhccccc---cCCChhHHHHHHHHHHHHHHHh----C--CCCCcEEEECCcHHHHHHHHHHHhc
Confidence 34455556667888887765432 235442 22567777777776 4 3556 89999999999999999999
Q ss_pred CCCCeEEEcCCCCCChH--HHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc-CCcEEEEcCCCCCcccCCCHHHHHHH
Q 012095 177 SPGDEVIIPAPFWVSYP--EMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEI 253 (471)
Q Consensus 177 ~~gd~Vlv~~p~y~~~~--~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~-~~~~i~i~~p~NPtG~~~~~~~l~~i 253 (471)
++||+|++++|+|.++. ..++..|++++.++++. ++.+|++++++++++ ++++|++++|+||||.+++ +++|
T Consensus 91 ~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~---~~~i 165 (396)
T 2ch1_A 91 EEGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPP--DRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQP---LEGV 165 (396)
T ss_dssp CTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT--TSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTH
T ss_pred CCCCeEEEEcCCcccHHHHHHHHHcCCceEEecCCC--CCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecC---HHHH
Confidence 99999999999999985 47788999999999864 567999999999987 8999999999999999999 8899
Q ss_pred HHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHH-----
Q 012095 254 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ----- 328 (471)
Q Consensus 254 ~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~----- 328 (471)
.++|++| +++||+||+|... ..... +.. .+..+++.|++|.++ ++.++||+++++++++.+...+
T Consensus 166 ~~l~~~~-~~~li~Dea~~~g----~~~~~---~~~-~~~d~~~~s~~K~~~-~~~g~g~~~~~~~~~~~~~~~~~~~~~ 235 (396)
T 2ch1_A 166 GQICHQH-DCLLIVDAVASLC----GVPFY---MDK-WEIDAVYTGAQKVLG-APPGITPISISPKALDVIRNRRTKSKV 235 (396)
T ss_dssp HHHHHHT-TCEEEEECTTTBT----TBCCC---TTT-TTCCEEECCCC-CCC-CCSSCEEEEECHHHHHHHHTCSSCCSC
T ss_pred HHHHHHc-CCEEEEEcccccc----CCccc---hhh-cCcCEEEEcCCcccc-CCCCeEEEEECHHHHHhhhhccCcccc
Confidence 9999999 9999999999832 11111 211 233477889999875 4456799999998888764310
Q ss_pred ------------------hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcc-
Q 012095 329 ------------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGA- 389 (471)
Q Consensus 329 ------------------~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g- 389 (471)
.....+++...|.++.++|+.. .++++++++++++++++++.+.|+++ |+++..+.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~ 312 (396)
T 2ch1_A 236 FYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQI--AEEGLENQIKRRIECAQILYEGLGKM-GLDIFVKDPRH 312 (396)
T ss_dssp GGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGG
T ss_pred eEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHC-CCeeccCCccc
Confidence 1122456788888888888741 12457888999999999999999988 8888777663
Q ss_pred ---eEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe-ec--CHHHHHHHHHHHHHHHH
Q 012095 390 ---FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY-AA--SLTTLQAAVERIKKGLL 463 (471)
Q Consensus 390 ---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~-~~--~~e~i~~~~~~l~~~l~ 463 (471)
.+++++++.. .+..++.++|++++||.+.+|..+..++++|+++ +. +++++++++++|+++++
T Consensus 313 ~~~~~~~~~~~~~-----------~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~ 381 (396)
T 2ch1_A 313 RLPTVTGIMIPKG-----------VDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLK 381 (396)
T ss_dssp BCTTEEEEECCTT-----------CCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEcCCC-----------CCHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHH
Confidence 3678888642 2678899999876799999988766678999999 42 88999999999999998
Q ss_pred hhCC
Q 012095 464 TLRP 467 (471)
Q Consensus 464 ~~~~ 467 (471)
++++
T Consensus 382 ~~~~ 385 (396)
T 2ch1_A 382 ATHP 385 (396)
T ss_dssp HHCT
T ss_pred HhCc
Confidence 8754
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=305.04 Aligned_cols=366 Identities=13% Similarity=0.139 Sum_probs=256.4
Q ss_pred ccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCC--CC-------CChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHH
Q 012095 70 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP--DF-------DTPVLIAEAGINAIREGFTRYTPNAGTLELRSA 140 (471)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~--~~-------~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ 140 (471)
.++..+.++.+..+...+..+...|.++++|+.|++ ++ +.++.+.+++. .+...|++..+..+|+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~ylD~~~~~~~~~~~~~~~~a~~----~~~~~y~~~~~~~~l~~~ 83 (456)
T 2ez2_A 8 FRIKSVETVSMIPRDERLKKMQEAGYNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMM----MGDEAYAGSENFYHLERT 83 (456)
T ss_dssp SCCCCCCCCCCCCHHHHHHHHHHTTTCGGGSCGGGCSEECSCSSSCCCCCHHHHHHHT----TCCCCSSSCHHHHHHHHH
T ss_pred eeeeeecccCCCCHHHHHHHHHHCCCCcccCCcccceeeeccccCCccCCHHHHHHhh----cchhhcccChhHHHHHHH
Confidence 466667776555555556666667777777777765 43 22345555443 445678888889999999
Q ss_pred HHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCC-CChHHHHHHcCCEEEEecCCCC----C---
Q 012095 141 ICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFW-VSYPEMARIADATPVILPTRIS----E--- 212 (471)
Q Consensus 141 ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y-~~~~~~~~~~G~~~~~v~~~~~----~--- 212 (471)
++++++ .+++++|+|+++++..++++++++|| +++.|+| ..|...+...|++++.++++.+ +
T Consensus 84 la~~~~--------~~~~~~~~~gt~a~~~al~~l~~~gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~ 153 (456)
T 2ez2_A 84 VQELFG--------FKHIVPTHQGRGAENLLSQLAIKPGQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIA 153 (456)
T ss_dssp HHHHHC--------CSEEEEESSHHHHHHHHHHHHCCTTC--EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCS
T ss_pred HHHHhC--------CCcEEEeCCcHHHHHHHHHHhCCCCC--EeccccccchhHHHHHHcCCEEEEeccccccccccccc
Confidence 999872 35899999999999999999999999 7889999 7778899999999999998732 2
Q ss_pred -CCcCCHHHHHhhhccCC----cEEEEcCCCC-CcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCc----------ccc
Q 012095 213 -NFLLDPKVLESKLTEKS----RLLILCSPSN-PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH----------IIY 276 (471)
Q Consensus 213 -~~~ld~e~l~~~l~~~~----~~i~i~~p~N-PtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~----------~~~ 276 (471)
+|.+|+++|++++++++ ++|++++|+| |||.+++.+++++|+++|++| |++||+||+|.. +.+
T Consensus 154 ~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~-~i~li~De~~~~g~~~~~~~~~~~~ 232 (456)
T 2ez2_A 154 FKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAH-GIKVFYDATRCVENAYFIKEQEQGF 232 (456)
T ss_dssp CTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHT-TCCEEEECTTHHHHHHHHHHHSTTC
T ss_pred ccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHc-CCeEEEEcccccccccccccccccc
Confidence 36799999999997665 8889999998 999999999999999999999 999999999986 344
Q ss_pred CCCCccccc-cCCCCCCceEEEecCCcccCccchhheeeEc-CHHHHHHHHHHHhcc-----cCCCChHHHHH-HHHHHh
Q 012095 277 APATHTSFA-SLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQF-----TSGASSISQKA-GVAALG 348 (471)
Q Consensus 277 ~~~~~~~~~-~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~-~~~~i~~l~~~~~~~-----~~~~~~~~q~a-a~~~L~ 348 (471)
.+....++. .+.. ...++++ |++|.++ +| |.||+++ ++++++.+....... ..+.+.....+ +.+.++
T Consensus 233 ~g~~~~~~~~~~~~-~~d~~~~-S~kk~~~-~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~ 308 (456)
T 2ez2_A 233 ENKSIAEIVHEMFS-YADGCTM-SGKKDCL-VN-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLRE 308 (456)
T ss_dssp TTSCHHHHHHHHHT-TCSEEEE-ETTTTTC-CS-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHH
T ss_pred CCcchhhhhhhhcc-cCCEEEE-eCcccCC-CC-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHH
Confidence 442111110 0111 1234444 7888765 77 8899998 788998887654321 11233333222 333332
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCcc-CCcccCCCCCCC-HHHHHHHHHHcCCE
Q 012095 349 LGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYY-GSEAEGFGKIEN-SESLCRYLLDKAQV 426 (471)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~-~~~~~~~~~~~~-~~~l~~~Ll~~~gV 426 (471)
. .. ++..++.+++.+++.+.|.+. |+.+..|.+++++|++++... +.... .- ...+++.|++++||
T Consensus 309 ~---~~---~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~L~~~~gv 376 (456)
T 2ez2_A 309 A---MQ---YEYIEHRVKQVRYLGDKLKAA-GVPIVEPVGGHAVFLDARRFCEHLTQD-----EFPAQSLAASIYVETGV 376 (456)
T ss_dssp H---TC---HHHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSSEEEEEHHHHTTTSCGG-----GCHHHHHHHHHHHHHSE
T ss_pred H---hH---HHHHHHHHHHHHHHHHHHhcC-CCccccCCCceEEEEEhHHhcCCCChh-----hccHHHHHHHHHHhcCe
Confidence 1 11 233444455666777777775 888878888999999874210 00000 01 23347777556699
Q ss_pred EEEC-CCCC------------CCCCcEEEEee---cCHHHHHHHHHHHHHHHHhhC
Q 012095 427 ALVP-GDAF------------GDDTCIRISYA---ASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 427 ~v~p-g~~f------------~~~~~iRis~~---~~~e~i~~~~~~l~~~l~~~~ 466 (471)
.+.+ |..| ...+++||+++ .+++++++++++|++++++..
T Consensus 377 ~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~~ 432 (456)
T 2ez2_A 377 RSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKE 432 (456)
T ss_dssp ECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred eeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 8776 4322 12378999999 589999999999999987643
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=295.42 Aligned_cols=332 Identities=14% Similarity=0.110 Sum_probs=247.0
Q ss_pred EcCCCCCCCCChHHHHHHHHHHHHcCCC----CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHH
Q 012095 99 RLAAGEPDFDTPVLIAEAGINAIREGFT----RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (471)
Q Consensus 99 ~l~~g~~~~~~p~~v~~a~~~~~~~~~~----~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~ 174 (471)
.|..+.+. ++|+.+++++.+.+.+... .|....+..+..+.+.+.+.+.+|. ++++|++|+|+++++..++.+
T Consensus 3 yld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~~~~v~~~~g~t~a~~~~~~~ 79 (382)
T 4eb5_A 3 YFDYTSAK-PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNG--GGGTVVFTSGATEANNLAIIG 79 (382)
T ss_dssp BCBTTTCC-CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTC--TTEEEEEESSHHHHHHHHHHH
T ss_pred eeccCCCC-CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEcCchHHHHHHHHHH
Confidence 34444443 5688999999998865211 1422212223444444444444563 568999999999999999999
Q ss_pred hc----CCCCeEEEcCCCCCChHHHHHH---cCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCH
Q 012095 175 VC----SPGDEVIIPAPFWVSYPEMARI---ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247 (471)
Q Consensus 175 l~----~~gd~Vlv~~p~y~~~~~~~~~---~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~ 247 (471)
+. ++||+|++++|+|+++...+.. .|++++.++++. ++.+|+++|++++++++++|++++|+||||.+++
T Consensus 80 l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~- 156 (382)
T 4eb5_A 80 YAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK--YGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQP- 156 (382)
T ss_dssp HHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCT--TSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCC-
T ss_pred HHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCC--CCccCHHHHHHHhcCCCeEEEEeccCCCccccCC-
Confidence 98 8999999999999988776654 699999999864 4668999999999888999999999999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHH-HHHHHH
Q 012095 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF-VAACNK 326 (471)
Q Consensus 248 ~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~-i~~l~~ 326 (471)
+++|.++|++| +++ |+||+|.. +.....+.. .+.++++.||||.+|++| +||++++++. +..+..
T Consensus 157 --l~~i~~l~~~~-~~~-i~D~a~~~----g~~~~~~~~----~~~di~~~s~sK~~g~~g--~G~~~~~~~~~l~~~~~ 222 (382)
T 4eb5_A 157 --VEEISEVLAGK-AAL-HIDATASV----GQIEVDVEK----IGADMLTISSNDIYGPKG--VGALWIRKEAKLQPVIL 222 (382)
T ss_dssp --HHHHHHHHTTS-SEE-EEECTTTB----TTBCCCHHH----HTCSEEEEETGGGTCCSS--CEEEEEETTCCCCCSSC
T ss_pred --HHHHHHHHHHC-CCE-EEEcchhc----CCcccCccc----cCCCEEEeehHHhcCCCc--eEEEEEccccccCceec
Confidence 88999999999 999 99999983 111111111 245689999999988666 7999987763 211100
Q ss_pred ----HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCc---ceEEeEecCCc
Q 012095 327 ----IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG---AFYLFIDFSTY 399 (471)
Q Consensus 327 ----~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~---g~~~~~~~~~~ 399 (471)
.......+++...+.++.++++. ..+++++++++++++++++.+.|++++|+++..+.+ +.++++.++..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (382)
T 4eb5_A 223 GGGQENGLRSGSENVPSIVGFGKAAEI---TAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYI 299 (382)
T ss_dssp SSCTGGGTSCSCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTS
T ss_pred CCCccccccCCCccHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeCCc
Confidence 01122334566667777777764 245678899999999999999999988888876642 33467777632
Q ss_pred cCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------------------CCcEEEEeec--CHHHHHHHHHHH
Q 012095 400 YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------------------DTCIRISYAA--SLTTLQAAVERI 458 (471)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~-------------------~~~iRis~~~--~~e~i~~~~~~l 458 (471)
+..++.+.|.++ ||.+.+|..|.. ++++|++++. +++++++++++|
T Consensus 300 ------------~~~~~~~~l~~~-gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l 366 (382)
T 4eb5_A 300 ------------EGESIVLSLDMA-GIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVL 366 (382)
T ss_dssp ------------CHHHHHHHHHHH-TCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHH
T ss_pred ------------CHHHHHHHHHHC-CEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHH
Confidence 678899988765 999999976432 4789999994 899999999999
Q ss_pred HHHHHhhC
Q 012095 459 KKGLLTLR 466 (471)
Q Consensus 459 ~~~l~~~~ 466 (471)
++++++++
T Consensus 367 ~~~~~~~~ 374 (382)
T 4eb5_A 367 PGVIERLR 374 (382)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987754
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=298.36 Aligned_cols=333 Identities=13% Similarity=0.073 Sum_probs=250.2
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhc
Q 012095 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC 176 (471)
Q Consensus 97 ~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~ 176 (471)
.+.|..+.+ .++|+.+.+++.+.+.. ...|....+..++|+.++++ +|. ++++|++|+|+++++..++++++
T Consensus 9 ~~yl~~~~~-~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~----~g~--~~~~v~~t~g~t~a~~~~~~~~~ 80 (392)
T 2z9v_A 9 PVITLTAGP-VNAYPEVLRGLGRTVLY-DYDPAFQLLYEKVVDKAQKA----MRL--SNKPVILHGEPVLGLEAAAASLI 80 (392)
T ss_dssp CSEECSSSC-CCCCHHHHHHTTSCCCC-TTSHHHHHHHHHHHHHHHHH----TTC--SSCCEEESSCTHHHHHHHHHHHC
T ss_pred cceeecCCC-cCCCHHHHHHHhccccc-cccHHHHHHHHHHHHHHHHH----hCC--CCCEEEEeCCchHHHHHHHHHhc
Confidence 355555543 35577888887765432 11111122345566666665 453 56899999999999999999999
Q ss_pred CCCCeEEEcCCCCCChH--HHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc--cCCcEEEEcCCCCCcccCCCHHHHHH
Q 012095 177 SPGDEVIIPAPFWVSYP--EMARIADATPVILPTRISENFLLDPKVLESKLT--EKSRLLILCSPSNPTGSVYPKNLLDE 252 (471)
Q Consensus 177 ~~gd~Vlv~~p~y~~~~--~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~--~~~~~i~i~~p~NPtG~~~~~~~l~~ 252 (471)
++||+|++++|+|+++. ..++..|++++.++++.+ +.+|+++++++++ +++++|++++|+||||.+++ +++
T Consensus 81 ~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~---l~~ 155 (392)
T 2z9v_A 81 SPDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYN--EAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINP---IDA 155 (392)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCTT--SCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECC---HHH
T ss_pred CCCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCCC--CCCCHHHHHHHHhcCCCCcEEEEeccCCCCceecc---HHH
Confidence 99999999999998753 445668999999998643 4689999999994 57899999999999999999 889
Q ss_pred HHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCccc-CccchhheeeEcCHHHHHHHHHHH---
Q 012095 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAGPKHFVAACNKIQ--- 328 (471)
Q Consensus 253 i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~R~G~v~~~~~~i~~l~~~~--- 328 (471)
|.++|++| +++||+||+|... .....+.. .+..+++.|+||.+ |.+| +||+++++++++.+....
T Consensus 156 i~~l~~~~-~~~li~D~a~~~g----~~~~~~~~----~~~d~~~~s~sK~~~~~~g--~G~l~~~~~~~~~l~~~~~g~ 224 (392)
T 2z9v_A 156 IGALVSAH-GAYLIVDAVSSFG----GMKTHPED----CKADIYVTGPNKCLGAPPG--LTMMGVSERAWAKMKANPLAP 224 (392)
T ss_dssp HHHHHHHT-TCEEEEECTTTBT----TBSCCGGG----GTCSEEEECSSSTTCCCSC--CEEEEECHHHHHHHHTCTTSC
T ss_pred HHHHHHHc-CCeEEEEcccccC----Cccccccc----ccceEEEecCcccccCCCc--eeEEEECHHHHHHhhhccCCC
Confidence 99999999 9999999999742 11111211 24568999999965 4455 599999999988876421
Q ss_pred -----------------hcccCCCChHHHHHHHHHHhccCCChHH-HHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC---
Q 012095 329 -----------------SQFTSGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGELEGVKMSEPQ--- 387 (471)
Q Consensus 329 -----------------~~~~~~~~~~~q~aa~~~L~~~~~~~~~-~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~--- 387 (471)
.....+++...+.++.++++. ..++ +++++++++++++++.+.|+++ |+++..|.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~ 300 (392)
T 2z9v_A 225 RASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDL---YLNEGPEAVWARHALTAKAMRAGVTAM-GLSVWAASDSI 300 (392)
T ss_dssp CSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGG
T ss_pred CceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHHHHHHc-CCeeccCCccc
Confidence 112234566666666677764 2444 7788999999999999999988 88877633
Q ss_pred -cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe-e--cCHHHHHHHHHHHHHHHH
Q 012095 388 -GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY-A--ASLTTLQAAVERIKKGLL 463 (471)
Q Consensus 388 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~-~--~~~e~i~~~~~~l~~~l~ 463 (471)
.+.++|+.++.. .+..++.++|.+++||.+.+|..+..++++|+++ + .+++++++++++|+++++
T Consensus 301 ~~~~~~~~~~~~~-----------~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~ 369 (392)
T 2z9v_A 301 ASPTTTAVRTPDG-----------VDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMN 369 (392)
T ss_dssp BCTTEEEEECCTT-----------CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEECCCC-----------CCHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHH
Confidence 456688888642 1678899998876699999998776678999995 5 499999999999999998
Q ss_pred hhCCC
Q 012095 464 TLRPG 468 (471)
Q Consensus 464 ~~~~~ 468 (471)
+++.+
T Consensus 370 ~~~~~ 374 (392)
T 2z9v_A 370 AAGRK 374 (392)
T ss_dssp HTTCC
T ss_pred HcCCC
Confidence 87654
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=300.86 Aligned_cols=338 Identities=17% Similarity=0.164 Sum_probs=254.9
Q ss_pred hcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCC-CCC-------CCHHHHHHHHHHHHHHhCCCCCCCcEEEeCC
Q 012095 92 QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYT-PNA-------GTLELRSAICHKLKEENGLSYTPDQILVSNG 163 (471)
Q Consensus 92 ~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~-~~~-------G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G 163 (471)
..+++.|.|..+.+. ++|+.+.+++.+++.. ...|+ |.. +..+..+.+.+.+.+.+| .++++|++|+|
T Consensus 18 ~~~~~~iyld~~~~~-~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~g 93 (423)
T 3lvm_A 18 RAMKLPIYLDYSATT-PVDPRVAEKMMQFMTM-DGTFGNPASRSHRFGWQAEEAVDIARNQIADLVG--ADPREIVFTSG 93 (423)
T ss_dssp --CCSSEECBTTTCC-CCCHHHHHHHTTSSST-TSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHT--CCGGGEEEESS
T ss_pred cccCCCEeecCCCcC-CCCHHHHHHHHHHHhh-cccccCCCccccchhHHHHHHHHHHHHHHHHHcC--CCCCeEEEeCC
Confidence 356788999988876 5688898988877651 01221 111 123444555555555566 36789999999
Q ss_pred hHHHHHHHHHHhcC----CCCeEEEcCCCCCChHHHHH---HcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcC
Q 012095 164 AKQSILQAVLAVCS----PGDEVIIPAPFWVSYPEMAR---IADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCS 236 (471)
Q Consensus 164 ~~~al~~~~~~l~~----~gd~Vlv~~p~y~~~~~~~~---~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~ 236 (471)
+++++..+++++++ +||+|+++.|+|+++...+. ..|++++.++++. ++.+|+++|++++++++++|++++
T Consensus 94 gt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~ 171 (423)
T 3lvm_A 94 ATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR--NGIIDLKELEAAMRDDTILVSIMH 171 (423)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT--TSCCCHHHHHHHCCTTEEEEECCS
T ss_pred hHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCC--CCccCHHHHHHhcCCCcEEEEEeC
Confidence 99999999998874 89999999999999887774 4599999999874 567899999999999999999999
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEc
Q 012095 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 316 (471)
Q Consensus 237 p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~ 316 (471)
|+||||.+++ +++|+++|++| |++||+||+|..... .. .... .+..+++.||||.+|.+| +||+++
T Consensus 172 ~~nptG~~~~---l~~i~~l~~~~-~~~li~Dea~~~~~~----~~---~~~~-~~~di~~~s~sK~~g~~g--~G~~~~ 237 (423)
T 3lvm_A 172 VNNEIGVVQD---IAAIGEMCRAR-GIIYHVDATQSVGKL----PI---DLSQ-LKVDLMSFSGHKIYGPKG--IGALYV 237 (423)
T ss_dssp BCTTTCBBCC---HHHHHHHHHHH-TCEEEEECTTTTTTS----CC---CTTT-SCCSEEEEESTTTTSCSS--CEEEEE
T ss_pred CCCCCccccC---HHHHHHHHHHc-CCEEEEEhhhhcCCC----Cc---Chhh-cCCCEEEechHHhcCCCC--eEEEEE
Confidence 9999999999 88899999999 999999999875221 11 1111 345699999999888666 999999
Q ss_pred CHHHHHHHHHHHh-------cccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCc-
Q 012095 317 PKHFVAACNKIQS-------QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG- 388 (471)
Q Consensus 317 ~~~~i~~l~~~~~-------~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~- 388 (471)
++++++.+..... ....+++...+.++.+++.. ...++++++++++++++++.+.|++++|+.+..+.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 314 (423)
T 3lvm_A 238 RRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRI---AKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEH 314 (423)
T ss_dssp CBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTT
T ss_pred eccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccc
Confidence 8877665543321 22345677777777777764 345688999999999999999999998998876654
Q ss_pred --ceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------------------CCcEEEEeec-
Q 012095 389 --AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------------------DTCIRISYAA- 446 (471)
Q Consensus 389 --g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~-------------------~~~iRis~~~- 446 (471)
+.++++.++.. +..++.+.|.+ |.+.+|..|.. .+++||+++.
T Consensus 315 ~~~~~~~~~~~~~------------~~~~l~~~l~~---i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~ 379 (423)
T 3lvm_A 315 GAPNILNVSFNYV------------EGESLIMALKD---LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRF 379 (423)
T ss_dssp BCTTEEEEEETTS------------CHHHHHHHTTT---EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTT
T ss_pred cCCCeEEEEeCCC------------CHHHHHHHHhh---heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCC
Confidence 23355555432 67788887653 99999977543 3789999995
Q ss_pred -CHHHHHHHHHHHHHHHHhhCC
Q 012095 447 -SLTTLQAAVERIKKGLLTLRP 467 (471)
Q Consensus 447 -~~e~i~~~~~~l~~~l~~~~~ 467 (471)
+++++++++++|++++++++.
T Consensus 380 ~t~e~i~~~~~~l~~~~~~~~~ 401 (423)
T 3lvm_A 380 TTEEEIDYTIELVRKSIGRLRD 401 (423)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhhc
Confidence 889999999999999987643
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=290.70 Aligned_cols=334 Identities=16% Similarity=0.091 Sum_probs=245.3
Q ss_pred HHhcCC-CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 90 LAQAGV-SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 90 ~~~~g~-~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
+...|. ++|+++.|.++.++|+.+++++. .|+ +...+++.+++.+++.+|.+ +++++++++|+++++
T Consensus 22 i~~~g~~~v~~~~~~~~~~~~~~~v~~a~~--------~~~---~~~~~~~~~~~~~a~~~g~~-~~~~~~~~~ggt~a~ 89 (374)
T 2aeu_A 22 LNEKGRDALYDLSGLSGGFLIDEKDKALLN--------TYI---GSSYFAEKVNEYGLKHLGGD-ENDKCVGFNRTSSAI 89 (374)
T ss_dssp HHHTCGGGCEECSSCCCCCCCCHHHHHHHT--------STT---HHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHH
T ss_pred HhccCccceeeecccCCCCCCCHHHHHHHH--------Hhc---CchHHHHHHHHHHHHHhCCC-CcceEEEEcChHHHH
Confidence 345677 89999999988889999988875 221 11456778888887778853 357999999999999
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChHH---HHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcE-EEEcCCCCCcccC
Q 012095 169 LQAVLAVCSPGDEVIIPAPFWVSYPE---MARIADATPVILPTRISENFLLDPKVLESKLTEKSRL-LILCSPSNPTGSV 244 (471)
Q Consensus 169 ~~~~~~l~~~gd~Vlv~~p~y~~~~~---~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~-i~i~~p~NPtG~~ 244 (471)
..+++++ |||+|++++|+|+++.. .++..|++++.+ .|+++++++ ++++++ |++++||||||.
T Consensus 90 ~~~~~~~--~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v---------~d~~~l~~~-~~~~~~~v~~~~p~nptG~- 156 (374)
T 2aeu_A 90 LATILAL--KPKKVIHYLPELPGHPSIERSCKIVNAKYFES---------DKVGEILNK-IDKDTLVIITGSTMDLKVI- 156 (374)
T ss_dssp HHHHHHH--CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE---------SCHHHHHTT-CCTTEEEEEECBCTTSCBC-
T ss_pred HHHHHhC--CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe---------CCHHHHHhc-CCCccEEEEEccCCCCCCC-
Confidence 9999987 99999999998877543 678889999887 288999998 778999 889999999997
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHH
Q 012095 245 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC 324 (471)
Q Consensus 245 ~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l 324 (471)
+..++++|.++|++| +++||+||+|..+..++....+... .+..++++||||.+ +|+|+||+++++++++.+
T Consensus 157 -~~~~l~~i~~l~~~~-~~~li~De~~~~~~~~~~~~~~~~~----~~~di~~~S~sK~l--~g~~~G~~~~~~~~~~~l 228 (374)
T 2aeu_A 157 -ELENFKKVINTAKNK-EAIVFVDDASGARVRLLFNQPPALK----LGADLVVTSTDKLM--EGPRGGLLAGKKELVDKI 228 (374)
T ss_dssp -CHHHHHHHHHHHHHH-TCCEEEECTTHHHHHHHTTCCCHHH----HTCSEEEEETTSSS--SSCSCEEEEEEHHHHHHH
T ss_pred -CcccHHHHHHHHHHc-CCEEEEECCcccccccccccCCccc----cCCcEEEecCcccc--cCcceEEEEECHHHHHHH
Confidence 778899999999999 9999999999876421110111111 13458999999985 578999999999999999
Q ss_pred HHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHH----HHHHHHHhcCC---CCCeee-CCCcceEEeEec
Q 012095 325 NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER----RDFLVKSFGEL---EGVKMS-EPQGAFYLFIDF 396 (471)
Q Consensus 325 ~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~----r~~l~~~L~~~---~g~~~~-~p~~g~~~~~~~ 396 (471)
......+..+++++.+.++.++|... ..+.+++..+..+.. ++.+.+.|..+ +|+.+. .|.|.+|.|.++
T Consensus 229 ~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~ 306 (374)
T 2aeu_A 229 YIEGTKFGLEAQPPLLAGIYRALKNF--NLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYK 306 (374)
T ss_dssp HHHHHTTTCBCCHHHHHHHHHHHHHC--CHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEES
T ss_pred HHhhccccCCCCHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEEEEeecc
Confidence 88776666678999999999998862 121223322222222 56666666664 366654 556666666554
Q ss_pred CCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC-CCCcEEEEeec-CH--HHHHHHHHHHHHHHHhhC
Q 012095 397 STYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-DDTCIRISYAA-SL--TTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~-~~~~iRis~~~-~~--e~i~~~~~~l~~~l~~~~ 466 (471)
+.... ..+..+++..+++++||.+.||..|. .++++||+++. +. ++++++++.|+++++++-
T Consensus 307 ~~~~~--------~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~ 372 (374)
T 2aeu_A 307 DDTIN--------IKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAF 372 (374)
T ss_dssp SHHHH--------HHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHT
T ss_pred ccccc--------ccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 32100 00123477777777799999998774 35799999986 22 248888888888887754
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=289.40 Aligned_cols=325 Identities=12% Similarity=0.115 Sum_probs=249.7
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEc
Q 012095 106 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIP 185 (471)
Q Consensus 106 ~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~ 185 (471)
+.++|+.+.+++.+.+. ..+ .....++.+.+.+.+.+.+|.+.+.++|++|+|+++++. ++..++++||+|+++
T Consensus 10 p~~~~~~v~~a~~~~~~---~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~~~gd~vi~~ 83 (384)
T 3zrp_A 10 PTTIKEDVLVAGLENNV---GFT--SKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLLKPNDKILVV 83 (384)
T ss_dssp CSCCCHHHHHHTTCCSC---CTT--SHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGCCTTCEEEEE
T ss_pred CCCCCHHHHHHhhcccc---ccc--cHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhcCCCCEEEEe
Confidence 44567788877765432 122 122245555555666656675433389999999999999 999999999999999
Q ss_pred CCCCCC--hHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc-CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC
Q 012095 186 APFWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 262 (471)
Q Consensus 186 ~p~y~~--~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~-~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~ 262 (471)
+|+|.+ +...++..|++++.++++. ++.+|++++++++++ ++++|++++|+||||.+++ +++|.++|++| |
T Consensus 84 ~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~ 157 (384)
T 3zrp_A 84 SNGVFGDRWEQIFKRYPVNVKVLRPSP--GDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREP---VKDVINKIRKY-V 157 (384)
T ss_dssp CSSHHHHHHHHHHTTSSCEEEEECCST--TCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECC---HHHHHHHHGGG-E
T ss_pred cCCcchHHHHHHHHHcCCcEEEecCCC--CCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECc---HHHHHHHHHhc-C
Confidence 999965 5566788899999999875 456899999999987 8999999999999999999 88999999999 9
Q ss_pred eEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHH-------------HHHHh
Q 012095 263 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC-------------NKIQS 329 (471)
Q Consensus 263 ~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l-------------~~~~~ 329 (471)
++||+|++|..... ... +. ..+..+++.|+||.++ ++.++||+++++++++.+ .....
T Consensus 158 ~~li~D~a~~~~~~----~~~---~~-~~~~d~~~~s~~K~~~-~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (384)
T 3zrp_A 158 ELIVVDGVSSVGAE----EVK---AE-EWNVDVYLTASQKALG-SAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLP 228 (384)
T ss_dssp EEEEEECTTTTTTS----CCC---TT-TTTCSEEEEETTSTTC-CCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHH
T ss_pred CEEEEECcccccCc----ccc---cc-ccCCCEEEecCccccc-CCCceEEEEECHHHHHHhcCCCCCCcccccHHHHHH
Confidence 99999999875321 111 11 1346699999999885 334599999999998877 32221
Q ss_pred ---------cccC-CCChHHHHHHHHHHhccCCChHH-HHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC----cceEEeE
Q 012095 330 ---------QFTS-GASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAFYLFI 394 (471)
Q Consensus 330 ---------~~~~-~~~~~~q~aa~~~L~~~~~~~~~-~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~----~g~~~~~ 394 (471)
...+ +++...+.++.++++. ...+ +++++++++++++++.+.|+++ |+++..+. +++++|+
T Consensus 229 ~~~~~~~~~~~~~g~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~ 304 (384)
T 3zrp_A 229 VMRGAEEGKAAYFATPPVHVILQLAEAFRL---IEKEGIENRIKRHTMVASAIRAGLEAL-GLEIVARRPESYSNTVTGV 304 (384)
T ss_dssp HHHHHHTTCCCCSSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSCSSGGGBCSSEEEE
T ss_pred HHHhhcccCCCcCCCCCHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHHHHHHHHHHC-CCeEccCcccccCccEEEE
Confidence 1112 5666677766677764 2333 7889999999999999999998 88887766 5677888
Q ss_pred ecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhCCCC
Q 012095 395 DFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRPGV 469 (471)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~~~~~ 469 (471)
.++.. +..++.+.|.++ ||.+.+|..+.. +++|+++.. +++++++++++|++++++++...
T Consensus 305 ~~~~~------------~~~~~~~~l~~~-gi~v~~g~~~~~-~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~~~ 367 (384)
T 3zrp_A 305 ILKVA------------DPQKVLAGTVNE-GVEFAPGVHPAF-KYFRIGHMGWVTPNDAIIAISVIERTLRKLGEPI 367 (384)
T ss_dssp ECSSS------------CHHHHHHHHHTT-TCCCEECCCTTC-CEEEEECCSSCCHHHHHHHHHHHHHHHHHHTCCC
T ss_pred ECCCC------------CHHHHHHHHHHC-CEEEecCCCCCc-CEEEEeccccCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 88752 688999998876 999999884433 899999884 89999999999999999876543
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-35 Score=293.03 Aligned_cols=322 Identities=13% Similarity=0.095 Sum_probs=248.6
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCC--------
Q 012095 107 FDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSP-------- 178 (471)
Q Consensus 107 ~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~-------- 178 (471)
.++++.+.+++.+++.....+|....+..++++.+++++.+.+|. ++++|++|+|+++++..++++++.+
T Consensus 40 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~ 117 (397)
T 3f9t_A 40 SNVLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNN--KDAYGHIVSGGTEANLMALRCIKNIWREKRRKG 117 (397)
T ss_dssp CCCCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTC--TTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCC--CCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhc
Confidence 345678889998887654444433336678888889999888884 6789999999999999999998776
Q ss_pred -----CCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc-CCcEEEEcCCCCCcccCCCHHHHHH
Q 012095 179 -----GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDE 252 (471)
Q Consensus 179 -----gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~-~~~~i~i~~p~NPtG~~~~~~~l~~ 252 (471)
||+|++++|+|.++...++..|++++.+|++. ++.+|+++|++++++ ++++|++++|+||||.+.+ +++
T Consensus 118 ~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~ 192 (397)
T 3f9t_A 118 LSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKE--DYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDN---IEE 192 (397)
T ss_dssp CCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCT--TSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCC---HHH
T ss_pred ccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCC--CCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCC---HHH
Confidence 99999999999999999999999999999864 467999999999988 8999999999999999998 889
Q ss_pred HHHHHHhCCCeEEEEccCCCccccCCCCc-cc------cccCCCCCCceEEEecCCcccCccchhheeeEcCHH-HHHHH
Q 012095 253 IARIVAKHPRLLVLSDEIYEHIIYAPATH-TS------FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-FVAAC 324 (471)
Q Consensus 253 i~~l~~~~~~~~ii~De~y~~~~~~~~~~-~~------~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~-~i~~l 324 (471)
|.++|++| |++||+||+|..+.++.... .. ...+. . +..+++.|++|.++ +|.|+||++++++ +++.+
T Consensus 193 i~~l~~~~-~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~s~~K~~~-~~~~~g~~~~~~~~~~~~~ 268 (397)
T 3f9t_A 193 LSKIAKEN-NIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFS-L-GVDSITIDPHKMGH-CPIPSGGILFKDIGYKRYL 268 (397)
T ss_dssp HHHHHHHH-TCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGG-G-TCSEEECCTTTTTC-CCSSCEEEEESSGGGGGGT
T ss_pred HHHHHHHh-CCeEEEEccccchhhhhccccccccccccccccc-c-cCCeEEEccccccC-CCCCceEEEEeCHHHHHhh
Confidence 99999999 99999999998765422111 00 11111 1 45688999999875 7889999987554 44443
Q ss_pred HHHHhccc-----------CCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEe
Q 012095 325 NKIQSQFT-----------SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 393 (471)
Q Consensus 325 ~~~~~~~~-----------~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~ 393 (471)
........ .+.+.+++.++...+. ..++++..++++++++++.+.|+++ |+.+..+..+.++|
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~ 342 (397)
T 3f9t_A 269 DVDAPYLTETRQATILGTRVGFGGACTYAVLRYLG-----REGQRKIVNECMENTLYLYKKLKEN-NFKPVIEPILNIVA 342 (397)
T ss_dssp CEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCCSSSEEE
T ss_pred ccCCccccCCCccccccccccchHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEcCCCccEEE
Confidence 22111111 1124455666655554 4667888888999999999999998 88755444455567
Q ss_pred EecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 012095 394 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLL 463 (471)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~ 463 (471)
++++ +..++.+.|.++ ||.+.+|.. ++++|++++. +++++++++++|+++++
T Consensus 343 ~~~~--------------~~~~~~~~l~~~-gi~v~~~~~---~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 343 IEDE--------------DYKEVCKKLRDR-GIYVSVCNC---VKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp EECT--------------THHHHHHHHHHT-TCBCEECSS---SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred EEeC--------------CHHHHHHHHHhC-CeEEeccCC---CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 7765 467888888876 999999864 5899999995 89999999999998764
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-35 Score=295.06 Aligned_cols=328 Identities=13% Similarity=0.053 Sum_probs=249.0
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCC----CCCC----CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGF----TRYT----PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~----~~Y~----~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~a 167 (471)
+.+.|..+.+. ++|+.+.+++.+.+.... ..|. ...+..++++.+++++ | .++++|++|+|++++
T Consensus 26 ~~~~ld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~~~g~t~a 98 (406)
T 3cai_A 26 GWVHFDAPAGM-LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLV----N--ADPGGVVLGADRAVL 98 (406)
T ss_dssp SCEECBGGGCC-CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHH----T--CCGGGEEEESCHHHH
T ss_pred CeEEEeCCCcC-CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHh----C--CCCCeEEEeCChHHH
Confidence 37888888876 568889999998886532 1232 1234556666666665 5 356899999999999
Q ss_pred HHHHHHHh---cCCCCeEEEcCCCCCChHHHHHH----cCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCC
Q 012095 168 ILQAVLAV---CSPGDEVIIPAPFWVSYPEMARI----ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNP 240 (471)
Q Consensus 168 l~~~~~~l---~~~gd~Vlv~~p~y~~~~~~~~~----~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NP 240 (471)
+..+++++ +++||+|+++.|+|+++...+.. .|++++.++++++ ++.+|+++|++++++++++|++++|+||
T Consensus 99 l~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~np 177 (406)
T 3cai_A 99 LSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIE-TGELPTWQWESLISKSTRLVAVNSASGT 177 (406)
T ss_dssp HHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTT-TCCCCGGGHHHHCCTTEEEEEEESBCTT
T ss_pred HHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcc-cCCcCHHHHHHHhCCCceEEEEeCCcCC
Confidence 99999887 78999999999999987655443 7999999998743 4568999999999989999999999999
Q ss_pred cccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhhe-eeEcCHH
Q 012095 241 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLG-YIAGPKH 319 (471)
Q Consensus 241 tG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G-~v~~~~~ 319 (471)
||.+++ +++|.++|+++ +++||+|++|... .....+.. .+..+++.|+||.+| ++ +| |++++++
T Consensus 178 tG~~~~---l~~i~~l~~~~-~~~li~D~a~~~g----~~~~~~~~----~~~d~~~~s~~K~~g-~~--~G~~~~~~~~ 242 (406)
T 3cai_A 178 LGGVTD---LRAMTKLVHDV-GALVVVDHSAAAP----YRLLDIRE----TDADVVTVNAHAWGG-PP--IGAMVFRDPS 242 (406)
T ss_dssp TCBBCC---CHHHHHHHHHT-TCEEEEECTTTTT----TCCCCHHH----HCCSEEEEEGGGGTS-CS--CEEEEESCHH
T ss_pred ccccCC---HHHHHHHHHHc-CCEEEEEcccccC----CCCCCchh----cCCCEEEeehhhhcC-CC--cCeEEEEehH
Confidence 999999 88999999999 9999999999742 11111211 245689999999887 54 99 9999998
Q ss_pred HHHHHHHHHh---------cccCCCChHHHHHHHHHHhccCC-C-----------hHHHHHHHHHHHHHHHHHHHHhcCC
Q 012095 320 FVAACNKIQS---------QFTSGASSISQKAGVAALGLGYA-G-----------GEVVSKMVKAFRERRDFLVKSFGEL 378 (471)
Q Consensus 320 ~i~~l~~~~~---------~~~~~~~~~~q~aa~~~L~~~~~-~-----------~~~~~~~~~~~~~~r~~l~~~L~~~ 378 (471)
+++.+..... ....+++...+.++.++++.... . ..++++++++++++++++.+.|+++
T Consensus 243 ~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 322 (406)
T 3cai_A 243 VMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSL 322 (406)
T ss_dssp HHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 8877654321 11234566666566566653100 0 0167889999999999999999998
Q ss_pred CCCeeeCCC---cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC------CCCC---CCcEEEEeec
Q 012095 379 EGVKMSEPQ---GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD------AFGD---DTCIRISYAA 446 (471)
Q Consensus 379 ~g~~~~~p~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~------~f~~---~~~iRis~~~ 446 (471)
+|+++..|. ++ ++++.++.. +..++.+.|.+ .||.+.+|. .|+. .+++|++++.
T Consensus 323 ~~~~~~~~~~~~~~-~~~~~~~~~------------~~~~~~~~L~~-~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~ 388 (406)
T 3cai_A 323 PLVMLIGRPEAQIP-VVSFAVHKV------------PADRVVQRLAD-NGILAIANTGSRVLDVLGVNDVGGAVTVGLAH 388 (406)
T ss_dssp TTEEECCCCSSBCS-EEEEEETTB------------CHHHHHHHHHH-TTEECEECCSCHHHHHHTTTTTTCCEEEECCT
T ss_pred CCeEEcCCccccCC-EEEEEECCc------------CHHHHHHHHHH-CCcEEecCChHHHHHHcCCCCCCCeEEEEeec
Confidence 888887664 55 577777642 67789988876 599999987 3443 3799999997
Q ss_pred --CHHHHHHHHHHHHH
Q 012095 447 --SLTTLQAAVERIKK 460 (471)
Q Consensus 447 --~~e~i~~~~~~l~~ 460 (471)
+++++++++++|++
T Consensus 389 ~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 389 YSTMAEVDQLVRALAS 404 (406)
T ss_dssp TCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH
Confidence 88999999998875
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-35 Score=290.76 Aligned_cols=330 Identities=14% Similarity=0.158 Sum_probs=254.2
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCC---CCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPN---AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 172 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~---~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~ 172 (471)
++++|+.| | ..+|+.+.+++.+.+ .++.+. .+..++++.+++++ |.+.+++++++|+|+++++..++
T Consensus 4 ~~~~~~~g-p-~~~~~~v~~a~~~~~----~~~~~~~~~~~~~~l~~~la~~~----g~~~~~~~v~~~~g~t~a~~~~~ 73 (366)
T 1m32_A 4 NYLLLTPG-P-LTTSRTVKEAMLFDS----CTWDDDYNIGVVEQIRQQLTALA----TASEGYTSVLLQGSGSYAVEAVL 73 (366)
T ss_dssp -CEECSSS-S-CCCCHHHHHTTCCCC----CTTSHHHHTTTHHHHHHHHHHHH----CSSSSEEEEEEESCHHHHHHHHH
T ss_pred ccccccCC-C-cCCCHHHHHHHhhhh----cCCCHHHHHHHHHHHHHHHHHHh----CCCCcCcEEEEecChHHHHHHHH
Confidence 36899999 4 457888888887642 122222 67888999999887 32223468999999999999999
Q ss_pred HHhcCCCCeEEEcC-CCCCC-hHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc--CCcEEEEcCCCCCcccCCCHH
Q 012095 173 LAVCSPGDEVIIPA-PFWVS-YPEMARIADATPVILPTRISENFLLDPKVLESKLTE--KSRLLILCSPSNPTGSVYPKN 248 (471)
Q Consensus 173 ~~l~~~gd~Vlv~~-p~y~~-~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~--~~~~i~i~~p~NPtG~~~~~~ 248 (471)
++++++||+|++.+ ++|+. +...++..|++++.++++. ++.+|+++|++++++ ++++|++++|+||||.+++
T Consensus 74 ~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~-- 149 (366)
T 1m32_A 74 GSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGE--VARPDVQAIDAILNADPTISHIAMVHSETTTGMLNP-- 149 (366)
T ss_dssp HHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCT--TSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC--
T ss_pred HHhcCCCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecC--
Confidence 99999999988775 66654 5677888999999999863 456899999999975 5789999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHH
Q 012095 249 LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 328 (471)
Q Consensus 249 ~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~ 328 (471)
+++|.++|++| +++||+||+|..... .. .+.. .+..+++.|+||.++ .+.++||+++++++++.+....
T Consensus 150 -l~~i~~l~~~~-~~~li~Dea~~~~~~----~~---~~~~-~~~di~~~s~~K~~~-~~~g~G~~~~~~~~~~~~~~~~ 218 (366)
T 1m32_A 150 -IDEVGALAHRY-GKTYIVDAMSSFGGI----PM---DIAA-LHIDYLISSANKCIQ-GVPGFAFVIAREQKLAACKGHS 218 (366)
T ss_dssp -HHHHHHHHHHH-TCEEEEECTTTTTTS----CC---CTTT-TTCSEEEEESSSTTC-CCSSEEEEEEEHHHHTTCTTCC
T ss_pred -HHHHHHHHHHc-CCEEEEECCccccCc----Cc---cccc-cCccEEEecCccccc-CCCceEEEEECHHHHHhhcCCC
Confidence 88999999999 999999999985321 11 1211 346699999999873 2345799999998887654310
Q ss_pred ------------------hcccCCCChHHHHHHHHHHhccCCChHH--HHHHHHHHHHHHHHHHHHhcCCCCCeeeCC--
Q 012095 329 ------------------SQFTSGASSISQKAGVAALGLGYAGGEV--VSKMVKAFRERRDFLVKSFGELEGVKMSEP-- 386 (471)
Q Consensus 329 ------------------~~~~~~~~~~~q~aa~~~L~~~~~~~~~--~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p-- 386 (471)
....++++...+.++.++|+. ..++ +++++++++++++++.+.|+++ |+++..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~ 294 (366)
T 1m32_A 219 RSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKE---LAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDDE 294 (366)
T ss_dssp SCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH---HHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGG
T ss_pred CCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHH---HHHccCHhHHHHHHHHHHHHHHHHHHHC-CCeeccCch
Confidence 011246788888888888875 2344 6788999999999999999988 8877655
Q ss_pred -CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 012095 387 -QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLL 463 (471)
Q Consensus 387 -~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~ 463 (471)
.+++++|++++...+ .+..++.+.|.++ ||.+.+|..| .++++|++++. +++++++++++|+++++
T Consensus 295 ~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~-gi~v~~~~~~-~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 363 (366)
T 1m32_A 295 LHSPIITAFYSPEDPQ---------YRFSEFYRRLKEQ-GFVIYPGKVS-QSDCFRIGNIGEVYAADITALLTAIRTAMY 363 (366)
T ss_dssp GBCSSEEEEECCCCTT---------CCHHHHHHHHHHT-TEECEECCCS-SSCEEEEECCSSCCHHHHHHHHHHHHHHCT
T ss_pred hcCceEEEEEcCccCC---------CCHHHHHHHHHHC-CEEEECCcCC-CCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 467788999874100 2678899998876 9999999877 46899999996 78999999999999876
Q ss_pred hh
Q 012095 464 TL 465 (471)
Q Consensus 464 ~~ 465 (471)
++
T Consensus 364 ~~ 365 (366)
T 1m32_A 364 WT 365 (366)
T ss_dssp TC
T ss_pred hc
Confidence 54
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=291.19 Aligned_cols=321 Identities=13% Similarity=0.070 Sum_probs=243.6
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEc
Q 012095 106 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIP 185 (471)
Q Consensus 106 ~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~ 185 (471)
+.++|+.+++++.+++.. ...|....+..++|+.+++++ |. +++++++|+|+++++..++++++++||+|+++
T Consensus 9 p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~----g~--~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~ 81 (352)
T 1iug_A 9 PVRLHPKALEALARPQLH-HRTEAAREVFLKARGLLREAF----RT--EGEVLILTGSGTLAMEALVKNLFAPGERVLVP 81 (352)
T ss_dssp SCCCCHHHHHHHHSCCCC-TTSHHHHHHHHHHHHHHHHHH----TC--SSEEEEEESCHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCCCCHHHHHHhccCCCC-ccCHHHHHHHHHHHHHHHHHh----CC--CCceEEEcCchHHHHHHHHHhccCCCCeEEEE
Confidence 345678888888765432 111111233466677766665 53 46899999999999999999999999999999
Q ss_pred CCCCCChH--HHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC-C
Q 012095 186 APFWVSYP--EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP-R 262 (471)
Q Consensus 186 ~p~y~~~~--~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~-~ 262 (471)
+|+|+++. ..++..|++++.++++. ++.+|++++++ +++++|++++|+||||.+++ +++|.++|++|+ |
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~---~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~ 153 (352)
T 1iug_A 82 VYGKFSERFYEIALEAGLVVERLDYPY--GDTPRPEDVAK---EGYAGLLLVHSETSTGALAD---LPALARAFKEKNPE 153 (352)
T ss_dssp ECSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCTTTSCC---SSCSEEEEESEETTTTEECC---HHHHHHHHHHHCTT
T ss_pred eCCchhHHHHHHHHHcCCceEEEeCCC--CCCCCHHHHhc---cCCcEEEEEEecCCcceecC---HHHHHHHHHhhCCC
Confidence 99999875 44566899999999864 35689988887 67899999999999999999 889999999863 7
Q ss_pred eEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCccc-CccchhheeeEcCHHHHHH---------HHH----H-
Q 012095 263 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAGPKHFVAA---------CNK----I- 327 (471)
Q Consensus 263 ~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~R~G~v~~~~~~i~~---------l~~----~- 327 (471)
++||+||+|... .....+.. .+..+++.|+||.+ |.+| +||+++++++++. +.. .
T Consensus 154 ~~li~D~a~~~~----~~~~~~~~----~~~d~~~~s~~K~~~~~~g--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (352)
T 1iug_A 154 GLVGADMVTSLL----VGEVALEA----MGVDAAASGSQKGLMCPPG--LGFVALSPRALERLKPRGYYLDLARELKAQK 223 (352)
T ss_dssp CEEEEECTTTBT----TBCCCSGG----GTCSEEEEESSSTTCCCSC--EEEEEECHHHHHTCCCCSSTTCHHHHHHHHT
T ss_pred CEEEEECCcccc----Ccceeccc----cCeeEEEecCcccccCCCc--eeEEEECHHHHHHhhCCCceeeHHHHHhhcc
Confidence 999999999742 11111111 24568899999954 4334 7999999988765 221 1
Q ss_pred HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC-cceEEeEecCCccCCcccC
Q 012095 328 QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-GAFYLFIDFSTYYGSEAEG 406 (471)
Q Consensus 328 ~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~-~g~~~~~~~~~~~~~~~~~ 406 (471)
......+++...+.++.++++. .++++++.+++++++++++.+.|+++ |+++..|. .++++|++++..
T Consensus 224 ~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~------- 292 (352)
T 1iug_A 224 EGESAWTPAINLVLAVAAVLEE---VLPRLEEHLALKAWQNALLYGVGEEG-GLRPVPKRFSPAVAAFYLPEG------- 292 (352)
T ss_dssp TTCCSSCCCHHHHHHHHHHHHH---HGGGHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSBCTTCEEEECCTT-------
T ss_pred cCCCCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccccccCCeEEEEEcCCC-------
Confidence 1223445677788777778775 23447889999999999999999988 88887774 566788888742
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhCC
Q 012095 407 FGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 467 (471)
Q Consensus 407 ~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~~~ 467 (471)
.+..++.++|.++ ||.+.+|..+..++++|++++. +++++++++++|+++++++.+
T Consensus 293 ----~~~~~~~~~l~~~-gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 350 (352)
T 1iug_A 293 ----VPYARVKEAFAQR-GAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEILP 350 (352)
T ss_dssp ----CCHHHHHHHHHTT-TEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHHC-
T ss_pred ----CCHHHHHHHHHHC-CEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHhcC
Confidence 2678899988866 9999999855456899999996 789999999999999988743
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=289.36 Aligned_cols=330 Identities=14% Similarity=0.111 Sum_probs=245.8
Q ss_pred EcCCCCCCCCChHHHHHHHHHHHHcCCC----CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHH
Q 012095 99 RLAAGEPDFDTPVLIAEAGINAIREGFT----RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (471)
Q Consensus 99 ~l~~g~~~~~~p~~v~~a~~~~~~~~~~----~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~ 174 (471)
.|..+.+. ++|+.+.+++.+.+.+... .|....+..++.+.+.+.+++.+|. ++++|++|+|+++++..++++
T Consensus 3 yld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~i~~~~g~~~a~~~~~~~ 79 (382)
T 4hvk_A 3 YFDYTSAK-PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNG--GGGTVVFTSGATEANNLAIIG 79 (382)
T ss_dssp BCBTTTCC-CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTC--TTEEEEEESSHHHHHHHHHHH
T ss_pred eecCCCcC-CCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCC--CcCeEEEECCchHHHHHHHHH
Confidence 34444433 4577899999988865211 1211123345666666666666774 678999999999999999999
Q ss_pred hc----CCCCeEEEcCCCCCChHHHHHH---cCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCH
Q 012095 175 VC----SPGDEVIIPAPFWVSYPEMARI---ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247 (471)
Q Consensus 175 l~----~~gd~Vlv~~p~y~~~~~~~~~---~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~ 247 (471)
++ ++||+|++++++|+++...+.. .|++++.++++. ++.+|+++|++++++++++|++++|+||||.+++
T Consensus 80 ~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~- 156 (382)
T 4hvk_A 80 YAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK--YGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQP- 156 (382)
T ss_dssp HHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCT--TSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCC-
T ss_pred hhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCC--CCCcCHHHHHHHhccCceEEEEECCCCCceeeCC-
Confidence 88 9999999999999998876554 599999999873 4579999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHH
Q 012095 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI 327 (471)
Q Consensus 248 ~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~ 327 (471)
+++|.++|++| ++ ||+|++|..... ...+.. .+..+++.|+||.+|.+| +|+++++++. .+...
T Consensus 157 --~~~i~~l~~~~-~~-li~D~a~~~~~~----~~~~~~----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~--~~~~~ 220 (382)
T 4hvk_A 157 --VEEISEVLAGK-AA-LHIDATASVGQI----EVDVEK----IGADMLTISSNDIYGPKG--VGALWIRKEA--KLQPV 220 (382)
T ss_dssp --HHHHHHHHSSS-SE-EEEECTTTBTTB----CCCHHH----HTCSEEEEESGGGTSCTT--CEEEEEETTC--CCCCS
T ss_pred --HHHHHHHHHHc-CE-EEEEhHHhcCCC----CCCchh----cCCCEEEEeHHHhcCCCc--eEEEEEcCcc--CcCcc
Confidence 88999999999 99 999999874211 111111 234589999999887666 7887776543 11111
Q ss_pred -------HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCc---ceEEeEecC
Q 012095 328 -------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG---AFYLFIDFS 397 (471)
Q Consensus 328 -------~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~---g~~~~~~~~ 397 (471)
......+++...+.++.+++.. ..+++++.+++++++++++.+.|++++|+.+..+.+ +.++++.++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (382)
T 4hvk_A 221 ILGGGQENGLRSGSENVPSIVGFGKAAEI---TAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFS 297 (382)
T ss_dssp SCSSCTGGGTSCSCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEET
T ss_pred cccCCCcCccccCCcCHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEEC
Confidence 1111334567777777777764 356789999999999999999999998988876654 234666665
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------------------CCcEEEEeec--CHHHHHHHHH
Q 012095 398 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------------------DTCIRISYAA--SLTTLQAAVE 456 (471)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~-------------------~~~iRis~~~--~~e~i~~~~~ 456 (471)
.. +..++.+.|.++ ||.+.+|..|.. ++++|++++. ++++++++++
T Consensus 298 ~~------------~~~~~~~~l~~~-gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~ 364 (382)
T 4hvk_A 298 YI------------EGESIVLSLDMA-GIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLE 364 (382)
T ss_dssp TC------------CHHHHHHHHHHT-TCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHH
T ss_pred CC------------CHHHHHHHHHHC-CEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHH
Confidence 42 678888887765 999999987653 4789999995 8899999999
Q ss_pred HHHHHHHhhC
Q 012095 457 RIKKGLLTLR 466 (471)
Q Consensus 457 ~l~~~l~~~~ 466 (471)
+|++++++++
T Consensus 365 ~l~~~~~~~~ 374 (382)
T 4hvk_A 365 VLPGVIERLR 374 (382)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988754
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-35 Score=290.08 Aligned_cols=325 Identities=19% Similarity=0.238 Sum_probs=238.6
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 175 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l 175 (471)
++|+|+.+.+.+ +++.+.+++.++.. +...|++..+..+|++++++++ | .+++++++|+++++..+++++
T Consensus 4 ~~i~~~~~~~~~-p~~~~~~a~~~~~~-~~~~y~~~~~~~~l~~~la~~~----g----~~~~~~~~~gt~a~~~~~~~~ 73 (347)
T 1jg8_A 4 MMIDLRSDTVTK-PTEEMRKAMAQAEV-GDDVYGEDPTINELERLAAETF----G----KEAALFVPSGTMGNQVSIMAH 73 (347)
T ss_dssp -CEECSCGGGCC-CCHHHHHHHHTCCC-CCGGGTCCHHHHHHHHHHHHHH----T----CSEEEEESCHHHHHHHHHHHH
T ss_pred eEEEeccccCCC-CCHHHHHHHhcCCC-CCcccCCChHHHHHHHHHHHHh----C----CceEEEecCcHHHHHHHHHHh
Confidence 579999999887 55678887765432 2346878888899999999986 3 246788888889999999999
Q ss_pred cCCCCeEEEcCCCCCChH---HHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc------CCcEEEEcCCCCCc-ccCC
Q 012095 176 CSPGDEVIIPAPFWVSYP---EMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPT-GSVY 245 (471)
Q Consensus 176 ~~~gd~Vlv~~p~y~~~~---~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~------~~~~i~i~~p~NPt-G~~~ 245 (471)
++|||+|++++|+|.... ..++..|++++.+ .+ .++.+|++++++++++ ++++|++++||||| |.++
T Consensus 74 ~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~--~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~ 150 (347)
T 1jg8_A 74 TQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PG--KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVV 150 (347)
T ss_dssp CCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CE--ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCC
T ss_pred cCCCCEEEEcCcchhhhccccchhhccCeEEEEe-cC--CCCccCHHHHHHHhccccccccCceEEEEeccccccCCccC
Confidence 999999999999986533 3677889999988 43 3456899999999975 68899999999999 9999
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCCcc--ccCCCCccccccCCCCCCceEEEecCCcccCccchhhe-eeEcCHHHHH
Q 012095 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHI--IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLG-YIAGPKHFVA 322 (471)
Q Consensus 246 ~~~~l~~i~~l~~~~~~~~ii~De~y~~~--~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G-~v~~~~~~i~ 322 (471)
+.+++++|+++|++| |++||+||+|... .+.+.. ...+....+ .++.||||.++++ +| |+++++++++
T Consensus 151 ~~~~l~~i~~~a~~~-~~~li~D~a~~~~~~~~~~~~---~~~~~~~~d--~~~~s~sK~l~~~---~G~~~~~~~~~~~ 221 (347)
T 1jg8_A 151 PLENIKEICTIAKEH-GINVHIDGARIFNASIASGVP---VKEYAGYAD--SVMFCLSKGLCAP---VGSVVVGDRDFIE 221 (347)
T ss_dssp CHHHHHHHHHHHHHH-TCEEEEEETTHHHHHHHHCCC---HHHHHHTCS--EEEEESSSTTCCS---SCEEEEECHHHHH
T ss_pred cHHHHHHHHHHHHHC-CCEEEeehhhhhcchhhcCCC---hHHhccccc--EEEEecccccCCC---ceEEEEcCHHHHH
Confidence 999999999999999 9999999997532 122221 111111123 3345899999743 67 5678999998
Q ss_pred HHHHHHhcccCC--CChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeee-CCCcceEEeEecCCc
Q 012095 323 ACNKIQSQFTSG--ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDFSTY 399 (471)
Q Consensus 323 ~l~~~~~~~~~~--~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~-~p~~g~~~~~~~~~~ 399 (471)
.+...+..+..+ .+.+.+.++..+|+.. .+.+. + ..++++.+.+.|+++ |+.+. .+..+.|+|++++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~---~-~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~ 293 (347)
T 1jg8_A 222 RARKARKMLGGGMRQAGVLAAAGIIALTKM---VDRLK---E-DHENARFLALKLKEI-GYSVNPEDVKTNMVILRTDNL 293 (347)
T ss_dssp HHHHHHHHHTCCCSSTHHHHHHHHHHHHHS---STTHH---H-HHHHHHHHHHHHHHH-TCBCCGGGCCSSEEEEECTTS
T ss_pred HHHHHHHHcCCchhHHHHHHHHHHHHHHHH---HHHHH---H-HHHHHHHHHHHHHhc-CceeccCCCcceEEEEEcccc
Confidence 887765544433 3445666666666541 12222 2 234667788888877 77652 234455689988731
Q ss_pred cCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012095 400 YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~ 465 (471)
+ .+..+++++|.++ ||.+.++. ++++|++++. +++++++++++|+++++++
T Consensus 294 -~---------~~~~~~~~~l~~~-gi~v~~~~----~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~~ 346 (347)
T 1jg8_A 294 -K---------VNAHGFIEALRNS-GVLANAVS----DTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 346 (347)
T ss_dssp -S---------SCHHHHHHHHHHH-TEECEEEE----TTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred -c---------CCHHHHHHHHHHC-CCEEecCC----CCeEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 0 2678899998765 99999853 4689999865 8999999999999998764
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-35 Score=288.79 Aligned_cols=333 Identities=13% Similarity=0.059 Sum_probs=250.2
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHH
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~ 174 (471)
+.+|+|+.+.+. ++|+.+.+++.+++. +|.+..|..++++.+++++.+.+| .++++|++|+|+++++..++++
T Consensus 13 p~~i~l~~~~~~-~~~~~v~~a~~~~~~----~~~~~~g~~~~~~~~~~~l~~~~g--~~~~~v~~~~g~t~a~~~~~~~ 85 (359)
T 1svv_A 13 PKPYSFVNDYSV-GMHPKILDLMARDNM----TQHAGYGQDSHCAKAARLIGELLE--RPDADVHFISGGTQTNLIACSL 85 (359)
T ss_dssp --CEECSCSCSS-CCCHHHHHHHHHHTT----CCCCSTTCSHHHHHHHHHHHHHHT--CTTSEEEEESCHHHHHHHHHHH
T ss_pred CeeEEecCCCcC-CCCHHHHHHHHHHHh----hccccccccHHHHHHHHHHHHHhC--CCCccEEEeCCchHHHHHHHHH
Confidence 458999998776 678889999988764 476777889999999999999988 4678999999999999999999
Q ss_pred hcCCCCeEEEcCCCCCChHH--HHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccC-------CcEEEEcCCCCCcccCC
Q 012095 175 VCSPGDEVIIPAPFWVSYPE--MARIADATPVILPTRISENFLLDPKVLESKLTEK-------SRLLILCSPSNPTGSVY 245 (471)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~~--~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~-------~~~i~i~~p~NPtG~~~ 245 (471)
++++||.|++++|+|+++.. .++..|++++.++.+ ++.+|+++|+++++++ +++|++++| ||||.++
T Consensus 86 ~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~ 161 (359)
T 1svv_A 86 ALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCP---DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQY 161 (359)
T ss_dssp HCCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCC
T ss_pred HhCCCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC---CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceec
Confidence 99999999999999998887 488899999999974 5779999999999765 889999999 7999999
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHH
Q 012095 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 325 (471)
Q Consensus 246 ~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~ 325 (471)
+.+++++|+++|++| |++||+||+|..+.++..+ .....+.-.....+++.|++|..+ ...+|++++++++++.+.
T Consensus 162 ~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~-~~~~~~~~~~~~d~~~~s~~K~g~--~~~~g~l~~~~~~~~~~~ 237 (359)
T 1svv_A 162 TKQELEDISASCKEH-GLYLFLDGARLASALSSPV-NDLTLADIARLTDMFYIGATKAGG--MFGEALIILNDALKPNAR 237 (359)
T ss_dssp CHHHHHHHHHHHHHH-TCEEEEECTTHHHHHTSTT-CCCCHHHHHHHCSEEEEECTTTTC--SSCEEEEECSGGGCTTHH
T ss_pred CHHHHHHHHHHHHHh-CCEEEEEccchhhhhcCCC-cchhhhhhhhcCCEEEEecccCCC--CCceEEEEEcccHHHHHH
Confidence 999999999999999 9999999999554322111 000000000112367778888743 245788888999888776
Q ss_pred HHH--hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCc
Q 012095 326 KIQ--SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSE 403 (471)
Q Consensus 326 ~~~--~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~ 403 (471)
... .......+.....++.+++. +..+++++++++++++++.+.| +.+|+++..|.+++|+|++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~------ 305 (359)
T 1svv_A 238 HLIKQRGALMAKGWLLGIQFEVLMK-----DNLFFELGAHSNKMAAILKAGL-EACGIRLAWPSASNQLFPILE------ 305 (359)
T ss_dssp HHHHHTTCCCTTTHHHHHHHHHHTS-----TTHHHHHHHHHHHHHHHHHHHH-HHTTCCBSSCCSSSEECBEEE------
T ss_pred HHHhcCCcccccchhhHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHh-ccCCeEEccCCccceEEEEcC------
Confidence 542 11111212222222333343 2346778899999999999999 566898887888999998763
Q ss_pred ccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012095 404 AEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 404 ~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~ 465 (471)
.++.++|++++||.+.+. ....++++|++++. +++++++++++|+++++++
T Consensus 306 ----------~~~~~~l~~~~gi~v~~~-~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 306 ----------NTMIAELNNDFDMYTVEP-LKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp ----------HHHHHHHTTTEECEEEEE-ETTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred ----------HHHHHHHHHhcCEEEEec-ccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence 368888887668988321 11235689998764 8999999999999887653
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-35 Score=292.57 Aligned_cols=326 Identities=17% Similarity=0.174 Sum_probs=245.7
Q ss_pred cCCCeEEcCCCCCCCC---ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGEPDFD---TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~~~~~---~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|++++|++.|.+... .++.+.+++.+++.+.... ...+..+.++.+++++.+.+| ++++++|+|+++++.
T Consensus 34 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~la~~~g----~~~v~~~~~gt~a~~ 107 (392)
T 3ruy_A 34 EGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLT--SRAFHSDQLGPWYEKVAKLTN----KEMVLPMNTGAEAVE 107 (392)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCC--CTTSEETTHHHHHHHHHHHHT----CSEEEEESSHHHHHH
T ss_pred CCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhcccc--ccccCCHHHHHHHHHHHHhcC----CCEEEEeCcHHHHHH
Confidence 4678999998875544 4789999999988653222 112233344444444444445 579999999999999
Q ss_pred HHHHHhcCC----------CCeEEEcCCCCCChHHHHHHcCCE-------------EEEecCCCCCCCcCCHHHHHhhhc
Q 012095 170 QAVLAVCSP----------GDEVIIPAPFWVSYPEMARIADAT-------------PVILPTRISENFLLDPKVLESKLT 226 (471)
Q Consensus 170 ~~~~~l~~~----------gd~Vlv~~p~y~~~~~~~~~~G~~-------------~~~v~~~~~~~~~ld~e~l~~~l~ 226 (471)
.+++.+..+ +|.|+++.|+|+++...+...+.. +..++. .|+++|+++++
T Consensus 108 ~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~ 180 (392)
T 3ruy_A 108 TAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY-------GDLEALKAAIT 180 (392)
T ss_dssp HHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT-------TCHHHHHHHCC
T ss_pred HHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc-------ccHHHHHHHhc
Confidence 999887644 689999999998877666554332 444443 28999999999
Q ss_pred cCCcEEEEcCCCCCcccCCCHHH-HHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccC
Q 012095 227 EKSRLLILCSPSNPTGSVYPKNL-LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305 (471)
Q Consensus 227 ~~~~~i~i~~p~NPtG~~~~~~~-l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 305 (471)
+++++|++++|+||||.+++.++ +++|+++|++| +++||+||+|.++.+.+... .. ...+...+ +.||||.++
T Consensus 181 ~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~-~~~li~De~~~~~~~~g~~~-~~-~~~~~~~d---~~~~SK~l~ 254 (392)
T 3ruy_A 181 PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKE-NVLFVADEIQTGLGRTGKVF-AC-DWDNVTPD---MYILGKALG 254 (392)
T ss_dssp TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTT-TCEEEEECTTTTTTTTSSSS-GG-GGGTCCCS---EEEECGGGG
T ss_pred cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeechhCCCccccch-hh-hccCCCCC---EEEEchhhh
Confidence 89999999999999999996555 99999999999 99999999998776554321 11 11111122 337899876
Q ss_pred ccc-hhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCC--CCCe
Q 012095 306 MTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL--EGVK 382 (471)
Q Consensus 306 ~~G-~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~--~g~~ 382 (471)
+| +|+||+++++++++.+.......+++.+++++.++.++|+. .+. ++.+++++++++++.+.|+++ +.+.
T Consensus 255 -gG~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~ 328 (392)
T 3ruy_A 255 -GGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEV----LEE-EKLTERSLQLGEKLVGQLKEIDNPMIT 328 (392)
T ss_dssp -TTTSCCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHH----HHH-TTHHHHHHHHHHHHHHHHTTCCCTTEE
T ss_pred -CChhhhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHH----HHh-hhHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 56 99999999999998887666666778999999999999985 222 677888999999999999987 3355
Q ss_pred eeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHHHH
Q 012095 383 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERIKK 460 (471)
Q Consensus 383 ~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~i~~~~~~l~~ 460 (471)
...+.++|+. +.++. +..++.+.|.+ .||.+.||. ++++|+++. .+++++++++++|++
T Consensus 329 ~~~~~g~~~~-~~~~~-------------~~~~l~~~l~~-~gi~v~~~~----~~~iRi~~~~~~~~~~i~~~~~~l~~ 389 (392)
T 3ruy_A 329 EVRGKGLFIG-IELNE-------------PARPYCEQLKA-AGLLCKETH----ENVIRIAPPLVISEEDLEWAFQKIKA 389 (392)
T ss_dssp EEEEETTEEE-EEESS-------------CSHHHHHHHHT-TTEECCCBT----TTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEeeeeEEE-EEEcc-------------hHHHHHHHHHH-CCcEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5666666654 45653 45688888875 599999875 679999955 489999999999998
Q ss_pred HH
Q 012095 461 GL 462 (471)
Q Consensus 461 ~l 462 (471)
++
T Consensus 390 ~l 391 (392)
T 3ruy_A 390 VL 391 (392)
T ss_dssp HH
T ss_pred Hh
Confidence 76
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-35 Score=289.63 Aligned_cols=318 Identities=16% Similarity=0.157 Sum_probs=243.4
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEE
Q 012095 106 DFDTPVLIAEAGINAIREGFTRYTPN--AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVI 183 (471)
Q Consensus 106 ~~~~p~~v~~a~~~~~~~~~~~Y~~~--~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vl 183 (471)
+.++|+.+.+++.+.+.. ++++. .+..++++.++++ +|.+.++++|++|+|+++++..+++++++ |+|+
T Consensus 8 p~~~~~~v~~a~~~~~~~---~~~~~~~~~~~~l~~~la~~----~g~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl 78 (353)
T 2yrr_A 8 PTPIPERVQKALLRPMRG---HLDPEVLRVNRAIQERLAAL----FDPGEGALVAALAGSGSLGMEAGLANLDR--GPVL 78 (353)
T ss_dssp SCCCCHHHHGGGGSCCCC---TTCHHHHHHHHHHHHHHHHH----HCCCTTCEEEEESSCHHHHHHHHHHTCSC--CCEE
T ss_pred CCCCCHHHHHHHhccccc---ccCHHHHHHHHHHHHHHHHH----hCCCCCCceEEEcCCcHHHHHHHHHHhcC--CcEE
Confidence 345678888888765532 22221 2345555555555 56544578999999999999999998876 8999
Q ss_pred EcCCCCCCh--HHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc-CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhC
Q 012095 184 IPAPFWVSY--PEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 260 (471)
Q Consensus 184 v~~p~y~~~--~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~-~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~ 260 (471)
+++|.|+++ ...++..|++++.++++. ++.+|++++++++++ ++++|++++|+||||.+++ +++|.++|++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~ 153 (353)
T 2yrr_A 79 VLVNGAFSQRVAEMAALHGLDPEVLDFPP--GEPVDPEAVARALKRRRYRMVALVHGETSTGVLNP---AEAIGALAKEA 153 (353)
T ss_dssp EEECSHHHHHHHHHHHHTTCCEEEEECCT--TSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC---HHHHHHHHHHH
T ss_pred EEcCCCchHHHHHHHHHcCCceEEEeCCC--CCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecC---HHHHHHHHHHc
Confidence 999998875 455678899999999864 456899999999988 8999999999999999999 88999999999
Q ss_pred CCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCccc-CccchhheeeEcCHHHHHHHH-------------H
Q 012095 261 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAGPKHFVAACN-------------K 326 (471)
Q Consensus 261 ~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~R~G~v~~~~~~i~~l~-------------~ 326 (471)
+++||+||+|.... ....+..+ +..+++.|++|.+ |.+| +||+++++++++.+. .
T Consensus 154 -~~~li~D~a~~~~~----~~~~~~~~----~~d~~~~s~~K~~~~~~g--~G~~~~~~~~~~~l~~~~~~~~~~~~~~~ 222 (353)
T 2yrr_A 154 -GALFFLDAVTTLGM----LPFSMRAM----GVDYAFTGSQKCLSAPPG--LAPIAASLEARKAFTGKRGWYLDLARVAE 222 (353)
T ss_dssp -TCEEEEECTTTTTT----SCCCHHHH----TCSEEECCTTSTTCCCSS--CEEEEECHHHHHHCCCCSCSTTCHHHHHH
T ss_pred -CCeEEEEcCccccc----cccccccc----CceEEEecCcccccCCCc--eEEEEECHHHHHHhccCCCccccHHHHhh
Confidence 99999999996421 11122221 3358889999965 4455 799999999887664 1
Q ss_pred H--HhcccCCCChHHHHHHHHHHhccCCChHH-HHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC--cceEEeEecCCccC
Q 012095 327 I--QSQFTSGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGELEGVKMSEPQ--GAFYLFIDFSTYYG 401 (471)
Q Consensus 327 ~--~~~~~~~~~~~~q~aa~~~L~~~~~~~~~-~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~--~g~~~~~~~~~~~~ 401 (471)
. ......+++...+.++.++++. ..++ +++++++++++++++.+.|+++ |+++..+. +++++|++++..
T Consensus 223 ~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-- 296 (353)
T 2yrr_A 223 HWERGGYHHTTPVLLHYALLEALDL---VLEEGVAARERRAREVYAWVLEELKAR-GFRPYPKASPLPTVLVVRPPEG-- 296 (353)
T ss_dssp HHTTCCCSSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSSBCTTEEEEECCTT--
T ss_pred hhhcCCCCCCCCHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHC-CCccccCccCCCeEEEEECCCC--
Confidence 1 1222345677777777777764 2333 7888999999999999999988 88887654 677778888642
Q ss_pred CcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHH-HHHHHHHHHHHh
Q 012095 402 SEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQ-AAVERIKKGLLT 464 (471)
Q Consensus 402 ~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~-~~~~~l~~~l~~ 464 (471)
.+..++.+.|.++ ||.+.+|..|..++++|+++.. ++++++ +++++|++++++
T Consensus 297 ---------~~~~~~~~~l~~~-gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 297 ---------VDADRLVRALYAE-GVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp ---------CCHHHHHHHHHHT-TEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred ---------CCHHHHHHHHHHC-CEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 2678899998876 9999999988778899999943 778888 999999998764
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=285.22 Aligned_cols=328 Identities=11% Similarity=0.075 Sum_probs=240.9
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHH
Q 012095 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 173 (471)
Q Consensus 94 g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~ 173 (471)
.+.+|+|+.+.+ ..+++.+.+++.++.......|+ ..++++.+++++.+.+| .+++|++|+|+++++..+++
T Consensus 6 ~~~~id~~~~~~-~~~~~~v~~a~~~~~~~~~~~~~----~~~~~~~l~~~la~~~g---~~~~v~~~~~gt~a~~~al~ 77 (356)
T 1v72_A 6 RPPALGFSSDNI-AGASPEVAQALVKHSSGQAGPYG----TDELTAQVKRKFCEIFE---RDVEVFLVPTGTAANALCLS 77 (356)
T ss_dssp CCCCCBCSCGGG-CCCCHHHHHHHHHTTSSCCCSTT----CSHHHHHHHHHHHHHHT---SCCEEEEESCHHHHHHHHHH
T ss_pred CCceEeeccCCc-cCCCHHHHHHHHhhccCcccccc----cchHHHHHHHHHHHHhC---CCCcEEEeCCccHHHHHHHH
Confidence 356899998865 45678899998876522123443 34566666666666667 24579999999999999999
Q ss_pred HhcCCCCeEEEcCCCCCChHHH--HHHc--CCEEEEecCCCCCCCcCCHHHHHh-hhcc-------CCcEEEEcCCCCCc
Q 012095 174 AVCSPGDEVIIPAPFWVSYPEM--ARIA--DATPVILPTRISENFLLDPKVLES-KLTE-------KSRLLILCSPSNPT 241 (471)
Q Consensus 174 ~l~~~gd~Vlv~~p~y~~~~~~--~~~~--G~~~~~v~~~~~~~~~ld~e~l~~-~l~~-------~~~~i~i~~p~NPt 241 (471)
++++|||.|+++.|+|.++... +... |++++.+|.+ ++.+|+++|++ ++++ ++++|++++|+| |
T Consensus 78 ~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-t 153 (356)
T 1v72_A 78 AMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP---AAKLDIVRLRERTREKVGDVHTTQPACVSITQATE-V 153 (356)
T ss_dssp TSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG---GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-T
T ss_pred HhcCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC---CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-C
Confidence 9999999999999998766554 6666 9999999874 36799999999 8875 688999999987 9
Q ss_pred ccCCCHHHHHHHHHHHHhCCCeEEEEccCCCcccc--CCCCccccccCCCCCCceEEEecCCcccCccchhhe--eeEcC
Q 012095 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY--APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLG--YIAGP 317 (471)
Q Consensus 242 G~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~--~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G--~v~~~ 317 (471)
|.+++.+++++|+++|++| +++||+|++|..+.. .+.. .....+.. +..+++.|+||. + +|+| |++++
T Consensus 154 G~~~~~~~l~~i~~~~~~~-~~~li~D~a~~~~~~~~~~~~-~~~~~~~~--~~d~~~~s~sK~-g---~~~G~g~~~~~ 225 (356)
T 1v72_A 154 GSIYTLDEIEAIGDVCKSS-SLGLHMDGSRFANALVSLGCS-PAEMTWKA--GVDALSFGATKN-G---VLAAEAIVLFN 225 (356)
T ss_dssp SCCCCHHHHHHHHHHHHHT-TCEEEEEETTHHHHHHHHTCC-TTTTTGGG--TCCEEEECCGGG-T---CSSCEEEEESS
T ss_pred CccCCHHHHHHHHHHHHHc-CCeEEEEchhhHhHhccCCCC-HHHhhhhh--cCCEEEEecccC-C---CcCccEEEEEC
Confidence 9999999999999999999 999999999975421 2211 11111111 112445689998 4 3666 88889
Q ss_pred HHHHHHHHHHHhcccC-CC-ChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEe
Q 012095 318 KHFVAACNKIQSQFTS-GA-SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFID 395 (471)
Q Consensus 318 ~~~i~~l~~~~~~~~~-~~-~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~ 395 (471)
+++++.+.......+. .. ....+..+...+. +....+..++++++++++.+.|++++|+++..|.+++++|++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~ 300 (356)
T 1v72_A 226 TSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLT-----DDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCR 300 (356)
T ss_dssp GGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTS-----TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEE
T ss_pred HHHHhhHHHHhhccCchhhhHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHhhCCCcEEccCCCccEEEEE
Confidence 9999888765433221 11 2222222233332 233445677788899999999998889988778888889988
Q ss_pred cCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012095 396 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~ 465 (471)
++ .+++++|.++ ||.+.||. |+ ++++|+++.. +++++++++++|++++++.
T Consensus 301 ~~----------------~~~~~~l~~~-gi~v~~g~-~~-~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 353 (356)
T 1v72_A 301 LD----------------SAMIDALLKA-GFGFYHDR-WG-PNVVRFVTSFATTAEDVDHLLNQVRLAADRT 353 (356)
T ss_dssp EC----------------HHHHHHHHHT-TCBCBCSS-SS-TTEEEEECCTTCCHHHHHHHHHHHHHTC---
T ss_pred cC----------------HHHHHHHHhc-CeEEeccc-cC-CCeEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 74 2688888765 99999987 66 7899999874 8899999999999987654
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=291.96 Aligned_cols=336 Identities=14% Similarity=0.097 Sum_probs=252.7
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCC---CCHH--HHHHHH-HHHHHHhCCCCCCCcEEEeCChHHH
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNA---GTLE--LRSAIC-HKLKEENGLSYTPDQILVSNGAKQS 167 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~~-~~~~Y~~~~---G~~~--lr~~ia-~~~~~~~g~~~~~~~i~it~G~~~a 167 (471)
.++|+|..|.+++ |+.+.+++.+++.+ ...+|+... |.+. +++.++ +++.+.+|. ++++|++++|+ ++
T Consensus 23 ~~~i~~~~~~~~~--~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~--~~~~i~~~sGt-~a 97 (407)
T 2dkj_A 23 REGLELIASENFV--SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGA--AWANVQPHSGS-QA 97 (407)
T ss_dssp HTSEECCTTCCCC--CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC--SEEECCCSSHH-HH
T ss_pred hcceeeccCCCCC--CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCC--CcceEEecchH-HH
Confidence 4689999999887 78899999888764 345564332 5554 444433 566667774 45567777775 59
Q ss_pred HHHHHHHhcCCCCeEEEcCCCCCCh---HHHHHHcCC--EEEEecCCCCCCCcCCHHHHHhhhcc-CCcEEEEcCCCCCc
Q 012095 168 ILQAVLAVCSPGDEVIIPAPFWVSY---PEMARIADA--TPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPT 241 (471)
Q Consensus 168 l~~~~~~l~~~gd~Vlv~~p~y~~~---~~~~~~~G~--~~~~v~~~~~~~~~ld~e~l~~~l~~-~~~~i~i~~p~NPt 241 (471)
+..++++++++||+|++++|+|.++ ...++..|. .++.+++++ +++.+|++++++++++ ++++|++++|+||
T Consensus 98 ~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~l~~~~~~~v~~~~p~~~- 175 (407)
T 2dkj_A 98 NMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRP-DTELIDLEEVRRLALEHRPKVIVAGASAYP- 175 (407)
T ss_dssp HHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCT-TTSSCCHHHHHHHHHHHCCSEEEECCSSCC-
T ss_pred HHHHHHHhcCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCc-ccCccCHHHHHHHHhhcCCeEEEEeccccC-
Confidence 9999999999999999999999988 345556666 455554432 3577999999999975 8999999999998
Q ss_pred ccCCCHHHHHHHHHHHHhCCCeEEEEccCCCc-cccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcC-HH
Q 012095 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KH 319 (471)
Q Consensus 242 G~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~-~~ 319 (471)
...+ +++|.++|++| +++||+||+|.. +.+.+... .. + ...++++.||||.+ +|+|+||++++ ++
T Consensus 176 -~~~~---l~~i~~l~~~~-~~~li~Dea~~~g~~~~~~~~-~~--~---~~~di~~~s~sK~l--~g~~~G~~~~~~~~ 242 (407)
T 2dkj_A 176 -RFWD---FKAFREIADEV-GAYLVVDMAHFAGLVAAGLHP-NP--L---PYAHVVTSTTHKTL--RGPRGGLILSNDPE 242 (407)
T ss_dssp -SCCC---HHHHHHHHHHH-TCEEEEECTTTHHHHHTTCSC-CC--T---TTCSEEEEESSGGG--CCCSCEEEEESCHH
T ss_pred -CCCC---HHHHHHHHHHc-CCEEEEEccccccccccCccC-Cc--c---ccccEEEEeccccC--CCCCceEEEECCHH
Confidence 5666 89999999999 999999999997 54443211 11 1 12568999999954 68899999999 89
Q ss_pred HHHHHHHHHhcccCCCChHH-HHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC-CCcceEEeEecC
Q 012095 320 FVAACNKIQSQFTSGASSIS-QKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLFIDFS 397 (471)
Q Consensus 320 ~i~~l~~~~~~~~~~~~~~~-q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~-p~~g~~~~~~~~ 397 (471)
+++.+......+..+.+... ..++.++|... ...++++++++++++++++.+.|+++ |+++.. +.+++++|++++
T Consensus 243 ~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~ 319 (407)
T 2dkj_A 243 LGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEA--LQPEFKEYSRLVVENAKRLAEELARR-GYRIVTGGTDNHLFLVDLR 319 (407)
T ss_dssp HHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECG
T ss_pred HHHHHHhhhcccccCCCcHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHhC-CceeecCCCCceEEEEECc
Confidence 99998887655544443343 33556666641 13678899999999999999999988 888764 356777899887
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC------CCCCcEEEEee------cCHHHHHHHHHHHHHHHHh
Q 012095 398 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF------GDDTCIRISYA------ASLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f------~~~~~iRis~~------~~~e~i~~~~~~l~~~l~~ 464 (471)
.. + .+..++.+.|.+ +||.+.+|..| +.++++|++++ .+++++++++++|++++++
T Consensus 320 ~~-~---------~~~~~~~~~l~~-~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 320 PK-G---------LTGKEAEERLDA-VGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp GG-T---------CCHHHHHHHHHH-TTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred cc-C---------CCHHHHHHHHHH-cCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 42 0 157788888755 59999998754 23578999996 5889999999999999876
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-34 Score=286.82 Aligned_cols=329 Identities=16% Similarity=0.145 Sum_probs=251.1
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEE
Q 012095 105 PDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVII 184 (471)
Q Consensus 105 ~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv 184 (471)
.+.++|+.+.+++.+.. ..+|.+ +..++.+.+.+.+.+.+|.+ .+++|++|+|+++++..++++++++||+|++
T Consensus 30 ~p~~~~~~v~~a~~~~~---~~~~~~--~~~~~~~~l~~~la~~~~~~-~~~~v~~~~gg~~al~~~~~~~~~~gd~vl~ 103 (393)
T 3kgw_A 30 GPSNLAPRVLAAGSLRM---IGHMQK--EMLQIMEEIKQGIQYVFQTR-NPLTLVVSGSGHCAMETALFNLLEPGDSFLT 103 (393)
T ss_dssp SCCCCCHHHHHHTTCCC---CCTTSH--HHHHHHHHHHHHHHHHHTCC-CSEEEEESCCTTTHHHHHHHHHCCTTCEEEE
T ss_pred CCCCCCHHHHHHhcccc---cCcccH--HHHHHHHHHHHHHHHHhCCC-CCcEEEEeCCcHHHHHHHHHhcCCCCCEEEE
Confidence 34456778887776532 122322 22455556666666666753 3346999999999999999999999999999
Q ss_pred cCCCCCC--hHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc-CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC
Q 012095 185 PAPFWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 261 (471)
Q Consensus 185 ~~p~y~~--~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~-~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~ 261 (471)
+.++|.+ +...++..|++++.++++.+ +.+|+++|++++++ ++++|++++|+||||.+++ +++|.++|++|
T Consensus 104 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~- 177 (393)
T 3kgw_A 104 GTNGIWGMRAAEIADRIGARVHQMIKKPG--EHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQP---LDGFGELCHRY- 177 (393)
T ss_dssp EESSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHT-
T ss_pred EeCCchhHHHHHHHHHcCCceEEEeCCCC--CCCCHHHHHHHHhhCCCcEEEEeccCCcchhhcc---HHHHHHHHHHc-
Confidence 9888743 35678889999999998643 46899999999987 8999999999999999999 88999999999
Q ss_pred CeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHh------------
Q 012095 262 RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS------------ 329 (471)
Q Consensus 262 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~------------ 329 (471)
|++||+||+|.... ... ... ..+..+++.|+||.++ ++.++||+++++++++.+.....
T Consensus 178 ~~~li~De~~~~g~----~~~---~~~-~~~~d~~~~s~sK~~~-~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (393)
T 3kgw_A 178 QCLLLVDSVASLGG----VPI---YMD-QQGIDIMYSSSQKVLN-APPGISLISFNDKAKYKVYSRKTKPVSFYTDITYL 248 (393)
T ss_dssp TCEEEEECTTTTTT----SCC---CTT-TTTCCEEEEESSSTTC-CCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHH
T ss_pred CCEEEEECCccccC----ccc---chh-hcCCCEEEecCccccc-CCCceeEEEECHHHHHHHhccCCCCCceeecHHHH
Confidence 99999999987421 111 111 1345688999999774 33449999999999988865321
Q ss_pred -----------cccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCc----ceEEeE
Q 012095 330 -----------QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG----AFYLFI 394 (471)
Q Consensus 330 -----------~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~----g~~~~~ 394 (471)
....+++...+.++.++++.. .+.++++++++++++++++.+.|+++ |+++..+.+ ++++|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~ 325 (393)
T 3kgw_A 249 AKLWGCEGETRVIHHTTPVTSLYCLRESLALI--AEQGLENCWRRHREATAHLHKHLQEM-GLKFFVKDPEIRLPTITTV 325 (393)
T ss_dssp HHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGGBCSSEEEE
T ss_pred HHhhhhccccCCCCCCCCHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcCCeEEEE
Confidence 112356777777777777641 12347889999999999999999998 887764433 566778
Q ss_pred ecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe-ec--CHHHHHHHHHHHHHHHHhhCCC
Q 012095 395 DFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY-AA--SLTTLQAAVERIKKGLLTLRPG 468 (471)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~-~~--~~e~i~~~~~~l~~~l~~~~~~ 468 (471)
.+++.. +..++.+.|++++||.+.+|..+..++++|+++ +. +++++++++++|++++++++.+
T Consensus 326 ~~~~~~-----------~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~~ 391 (393)
T 3kgw_A 326 TVPAGY-----------NWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHCPKN 391 (393)
T ss_dssp ECCTTB-----------CHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSCBC
T ss_pred eCCCCC-----------CHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhhhc
Confidence 886532 678999999887799999998777788999998 53 8999999999999999887643
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-35 Score=290.56 Aligned_cols=320 Identities=13% Similarity=0.127 Sum_probs=244.5
Q ss_pred cCCCeEEcCCCCC--CCC-ChHHHHHHHHHHHHcC---CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHH
Q 012095 93 AGVSVIRLAAGEP--DFD-TPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (471)
Q Consensus 93 ~g~~~i~l~~g~~--~~~-~p~~v~~a~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~ 166 (471)
.|..++||+.|.+ .++ +++.+.+++.+++.+. ...| +..+..++++.+++++ |. +++|++|+|+++
T Consensus 26 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~y-~~~~~~~l~~~la~~~----g~---~~~v~~~~g~t~ 97 (375)
T 2eh6_A 26 EGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLY-ENPWQEELAHKLVKHF----WT---EGKVFFANSGTE 97 (375)
T ss_dssp TCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCTTB-CCHHHHHHHHHHHHTS----SS---CEEEEEESSHHH
T ss_pred CCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCccc-CCHHHHHHHHHHHhhc----CC---CCeEEEeCchHH
Confidence 4667999999984 566 6889999999888653 2356 5566778888887774 53 389999999999
Q ss_pred HHHHHHHH---hc---CCC-CeEEEcCCCCCChHHHHHHcCCE-------------EEEecCCCCCCCcCCHHHHHhhhc
Q 012095 167 SILQAVLA---VC---SPG-DEVIIPAPFWVSYPEMARIADAT-------------PVILPTRISENFLLDPKVLESKLT 226 (471)
Q Consensus 167 al~~~~~~---l~---~~g-d~Vlv~~p~y~~~~~~~~~~G~~-------------~~~v~~~~~~~~~ld~e~l~~~l~ 226 (471)
++..++++ ++ +|| |+|++++|+|+.+...+...+.. +..++. .|+++|+++++
T Consensus 98 a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~ 170 (375)
T 2eh6_A 98 SVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL-------NDIDSVYKLLD 170 (375)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT-------TCHHHHHTTCC
T ss_pred HHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC-------chHHHHHHHhc
Confidence 99998865 45 788 99999999999987766554432 223321 48999999998
Q ss_pred cCCcEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccC
Q 012095 227 EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305 (471)
Q Consensus 227 ~~~~~i~i~~p~NPtG~~-~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 305 (471)
+++++|++++|+||||.+ .+.+++++|.++|++| +++||+||+|.++.+.+.. ..+..+.. ..+++ ||||.++
T Consensus 171 ~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~-~~~~~~~~-~~d~~---s~SK~~~ 244 (375)
T 2eh6_A 171 EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEK-DVLLIIDEVQTGIGRTGEF-YAYQHFNL-KPDVI---ALAKGLG 244 (375)
T ss_dssp TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGGGGTC-CCSEE---EECGGGG
T ss_pred CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHh-CCEEEEeccccCCCCCCcc-hhhhhcCC-CCCEE---EEccccc
Confidence 889999999999999998 5689999999999999 9999999999976443321 12222221 12222 8999998
Q ss_pred ccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC
Q 012095 306 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385 (471)
Q Consensus 306 ~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~ 385 (471)
+|+|+||+++++++++.+.......+++.+++.|.++.++|+. .+ +..++++++++++.+.|++++ ....
T Consensus 245 -~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~---~~~~~~~~~~~~l~~~L~~~~-~~~~- 314 (375)
T 2eh6_A 245 -GGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDE----VE---KLLPHVREVGNYFKEKLKELG-KGKV- 314 (375)
T ss_dssp -TTSCCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHTT-SSEE-
T ss_pred -CCCCeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHh-cCCc-
Confidence 7999999999998887766532334566789999988888874 22 677888889999999998873 3333
Q ss_pred CCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHH
Q 012095 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKG 461 (471)
Q Consensus 386 p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~ 461 (471)
+..++++|++++. +..++++.|++ .||.+.|+. ++++|++++. +++++++++++|+++
T Consensus 315 ~~~g~~~~~~~~~-------------~~~~~~~~l~~-~gi~~~~~~----~~~iRi~~~~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 315 KGRGLMLGLELER-------------ECKDYVLKALE-KGLLINCTA----GKVLRFLPPLIIQKEHIDRAISVLREI 374 (375)
T ss_dssp EEETTEEEEECSS-------------CCHHHHHHHHH-TTEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEEEcC-------------cHHHHHHHHHH-CCCEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3346678888863 45678998886 599999863 5789999873 899999999999875
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-34 Score=291.36 Aligned_cols=360 Identities=12% Similarity=0.088 Sum_probs=238.7
Q ss_pred cCCCeEEcCCC--CCCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAG--EPDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g--~~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.++|++.| .+.++. ++.+++++.+++.+. ..|.+..+..++++++++++.+.++ ...++|++|+|+++++.
T Consensus 27 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~gg~ea~~ 103 (430)
T 3i4j_A 27 AGRRYLDGSSGALVANIGHGRAEVGERMAAQAARL-PFVHGSQFSSDVLEEYAGRLARFVG--LPTFRFWAVSGGSEATE 103 (430)
T ss_dssp TSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHC-CCCCTTTCEEHHHHHHHHHHHHHTT--CTTCEEEEESSHHHHHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhc-ccccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCcHHHHHH
Confidence 46779999988 455554 889999999988763 3454556778899999999988877 35679999999999999
Q ss_pred HHHHHhc--------CCCCeEEEcCCCCCChHHHHHHcCCE---------------EEEecCCCC-CCCcCCHHHHHhhh
Q 012095 170 QAVLAVC--------SPGDEVIIPAPFWVSYPEMARIADAT---------------PVILPTRIS-ENFLLDPKVLESKL 225 (471)
Q Consensus 170 ~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~G~~---------------~~~v~~~~~-~~~~ld~e~l~~~l 225 (471)
.++++++ .++|.|++.+|+|+++...+...+.. +..++.+.. .....|+++|++++
T Consensus 104 ~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l 183 (430)
T 3i4j_A 104 SAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALL 183 (430)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHH
Confidence 9999886 34789999999999988665554442 222222110 00123668898888
Q ss_pred cc---CCcEEEEcCC-CC-Cccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEec
Q 012095 226 TE---KSRLLILCSP-SN-PTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 299 (471)
Q Consensus 226 ~~---~~~~i~i~~p-~N-PtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S 299 (471)
++ +..++++++| +| ++|. +++++++++|.++|++| |++||+||+|.++.+.+. ...+...++.... +.+
T Consensus 184 ~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~DEv~~~~~~~g~-~~~~~~~~~~~~d---i~t 258 (430)
T 3i4j_A 184 EREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEA-GIIFIADEVMSGMGRCGS-PLALSRWSGVTPD---IAV 258 (430)
T ss_dssp HHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSS-SSGGGGTTTCCCS---EEE
T ss_pred HhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcccc-hhhhhhhcCCCCc---EEE
Confidence 62 3334444455 66 8886 77888999999999999 999999999998765543 1222222011122 346
Q ss_pred CCcccCccc-hhheeeEcCHHHHHHHHHH----HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHH
Q 012095 300 FSKAFAMTG-WRLGYIAGPKHFVAACNKI----QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 374 (471)
Q Consensus 300 ~SK~~g~~G-~R~G~v~~~~~~i~~l~~~----~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~ 374 (471)
|||.++ .| ||+||+++++++++.+... ....+++.++++|.++.++|+.... ++++++.++..+..++.+.+.
T Consensus 259 ~sK~l~-~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~ 336 (430)
T 3i4j_A 259 LGKGLA-AGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVER-EDLTGAAKERGAQLLAGLQAL 336 (430)
T ss_dssp ECGGGT-TTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHH
T ss_pred Eccccc-CCccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHH
Confidence 999998 69 9999999999999998874 3445677899999999999974211 344555555555666666665
Q ss_pred hcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC---CCCcEEEEee--cCHH
Q 012095 375 FGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG---DDTCIRISYA--ASLT 449 (471)
Q Consensus 375 L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~---~~~~iRis~~--~~~e 449 (471)
+.+++++...++.|.| +++.+.+.... ..+.......++++.|+++ ||.+.|+..+. .++++||+++ .+++
T Consensus 337 ~~~~~~~~~~~~~g~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e 412 (430)
T 3i4j_A 337 QARFPQMMQVRGTGLL-LGVVLGDLATG--QAFETPGIASRIGAAALKR-GLITYPGSGAEPNGRGDHLLLGPPLSITAA 412 (430)
T ss_dssp HHHCTTEEEEEEETTE-EEEEEC--------------CHHHHHHHHHHT-TEECC-----------CEEEECCCTTCCHH
T ss_pred HHhCCCeEEEEEEEEE-EEEEecccccc--CCCccHHHHHHHHHHHHhC-CCEEEecccccCCCCCCEEEEECCCCCCHH
Confidence 5556677776666665 66666431000 0000001246788988865 99999984322 2478999988 4999
Q ss_pred HHHHHHHHHHHHHHhhC
Q 012095 450 TLQAAVERIKKGLLTLR 466 (471)
Q Consensus 450 ~i~~~~~~l~~~l~~~~ 466 (471)
++++++++|+++++++.
T Consensus 413 ~i~~~l~~l~~~l~~~~ 429 (430)
T 3i4j_A 413 EVDGLLALLAGALEDVL 429 (430)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999998753
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-34 Score=290.49 Aligned_cols=335 Identities=13% Similarity=0.144 Sum_probs=242.3
Q ss_pred cCCCeEEcCCCCC--CCCC--hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 93 AGVSVIRLAAGEP--DFDT--PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 93 ~g~~~i~l~~g~~--~~~~--p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
.|+.++|++.|.+ ++++ |+.+++++.+++.+.. .|++..+..+++..+++.+.+.+|.++ +++|++|+|+++++
T Consensus 40 ~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~v~~~~gg~ea~ 117 (419)
T 2eo5_A 40 DGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLA-HAAANDFYNIPQLELAKKLVTYSPGNF-QKKVFFSNSGTEAI 117 (419)
T ss_dssp TSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSC-CCSCSCSCCHHHHHHHHHHHHHSSCSS-CEEEEEESSHHHHH
T ss_pred CCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCc-cccccccCCHHHHHHHHHHHHhCCCCc-CCEEEEeCchHHHH
Confidence 4667999999884 4443 6899999999886532 354444556777888888888888543 78999999999999
Q ss_pred HHHHHHhcC-CCCeEEEcCCCCCChHHHHH-HcC-------------CEEEEecCCCC--CCCc------------CCHH
Q 012095 169 LQAVLAVCS-PGDEVIIPAPFWVSYPEMAR-IAD-------------ATPVILPTRIS--ENFL------------LDPK 219 (471)
Q Consensus 169 ~~~~~~l~~-~gd~Vlv~~p~y~~~~~~~~-~~G-------------~~~~~v~~~~~--~~~~------------ld~e 219 (471)
..+++++.. +||.|++.+|+|+++...+. ..| ..++.+|.+.+ .+|+ +|++
T Consensus 118 ~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~ 197 (419)
T 2eo5_A 118 EASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIE 197 (419)
T ss_dssp HHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHH
Confidence 999987654 48999999999986554332 222 25677776421 0112 4688
Q ss_pred HHH-hhhcc-----CCcEEEEcCCC-CCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCC
Q 012095 220 VLE-SKLTE-----KSRLLILCSPS-NPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 291 (471)
Q Consensus 220 ~l~-~~l~~-----~~~~i~i~~p~-NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~ 291 (471)
+|+ +++++ +++ +++++|+ ||||. +.+++++++|.++|++| +++||+||+|.++.+.+.. ..+... +..
T Consensus 198 ~l~~~~i~~~~~~~~~~-~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~-~~~li~DE~~~~~g~~g~~-~~~~~~-~~~ 273 (419)
T 2eo5_A 198 FIEDYIFVNLVPPEEVA-GIFFEPIQGEGGYVIPPKNFFAELQKLAKKY-GILLVDDEVQMGLGRTGKL-FAIENF-NTV 273 (419)
T ss_dssp HHHHTHHHHTCCGGGEE-EEEECSSBTTTTSBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGGGG-TCC
T ss_pred HHHHHHHhhccCCCCEE-EEEEeCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCccCcch-hhHHhc-CCC
Confidence 999 88863 344 5556674 67896 67899999999999999 9999999999987654431 111111 112
Q ss_pred CceEEEecCCcccCccc-hhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Q 012095 292 ERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 370 (471)
Q Consensus 292 ~~~i~~~S~SK~~g~~G-~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~ 370 (471)
.+ +.||||.++ +| +|+||++++++++ .+ ......+++.++++|.++.++|+. .+++++++++++++
T Consensus 274 ~d---~~t~sK~~~-~G~~riG~~~~~~~~~-~~-~~~~~~t~~~n~~~~~aa~aal~~-------~~~~~~~~~~~~~~ 340 (419)
T 2eo5_A 274 PD---VITLAKALG-GGIMPIGATIFRKDLD-FK-PGMHSNTFGGNALACAIGSKVIDI-------VKDLLPHVNEIGKI 340 (419)
T ss_dssp CS---EEEECGGGG-TTTSCCEEEEEEGGGC-CC-------CCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred CC---EEEeccccc-CCccceEEEEEchHhh-cC-CcccCCCCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 22 338999999 59 9999999999988 66 323345667899999999999974 12278889999999
Q ss_pred HHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCH
Q 012095 371 LVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASL 448 (471)
Q Consensus 371 l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~--~~~ 448 (471)
+.+.|.++ +...++.|. |+|+++.... .... +++.|+++ ||.+.|+. ++++||+++ .++
T Consensus 341 l~~~L~~~--~~~~~~~g~-~~~i~~~~~~----------~~~~-~~~~l~~~-Gv~v~~~~----~~~lRis~~~~~t~ 401 (419)
T 2eo5_A 341 FAEELQGL--ADDVRGIGL-AWGLEYNEKK----------VRDR-IIGESFKR-GLLLLPAG----RSAIRVIPPLVISE 401 (419)
T ss_dssp HHHHHTTS--SSEEEEETT-EEEEECSCHH----------HHHH-HHHHHHHT-TEECEEET----TTEEEECCCTTCCH
T ss_pred HHHHHHHh--hhheEeeeE-EEEEEEecCc----------cHHH-HHHHHHHC-CCEEecCC----CCEEEEECCCCCCH
Confidence 99999886 444445554 5677873210 0345 88888864 99999974 579999776 499
Q ss_pred HHHHHHHHHHHHHHHhh
Q 012095 449 TTLQAAVERIKKGLLTL 465 (471)
Q Consensus 449 e~i~~~~~~l~~~l~~~ 465 (471)
+++++++++|+++++++
T Consensus 402 e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 402 EEAKQGLDILKKVIKVV 418 (419)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999998764
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-34 Score=287.89 Aligned_cols=327 Identities=13% Similarity=0.112 Sum_probs=253.4
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEc
Q 012095 106 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIP 185 (471)
Q Consensus 106 ~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~ 185 (471)
+.++++.+.+++.+.+ ...|. ....++.+.+.+++.+.+|.+ ..+.+++|+|+++++..++++++++||+|+++
T Consensus 21 p~~~~~~v~~a~~~~~---~~~~~--~~~~~~~~~~~~~la~~~~~~-~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~ 94 (411)
T 3nnk_A 21 PINADPRVLRAMSSQL---IGQYD--PAMTHYMNEVMALYRGVFRTE-NRWTMLVDGTSRAGIEAILVSAIRPGDKVLVP 94 (411)
T ss_dssp CCCCCHHHHHHHTSCC---CCTTC--HHHHHHHHHHHHHHHHHHTCC-CSEEEEEESCHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCCCCHHHHHHhhccc---ccccc--HHHHHHHHHHHHHHHHHhCCC-CCcEEEECCCcHHHHHHHHHHhcCCCCEEEEe
Confidence 4455777877776432 12232 233456666666777667753 22348889999999999999999999999999
Q ss_pred CCCCCC--hHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc-CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC
Q 012095 186 APFWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 262 (471)
Q Consensus 186 ~p~y~~--~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~-~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~ 262 (471)
+|+|.+ +...++..|++++.++++ .++.+|+++|++++++ ++++|++++|+||||.+++ +++|.++|++| |
T Consensus 95 ~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~ 168 (411)
T 3nnk_A 95 VFGRFGHLLCEIARRCRAEVHTIEVP--WGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQP---LAELGEICRRY-D 168 (411)
T ss_dssp ECSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHH-T
T ss_pred cCCchHHHHHHHHHHcCCeEEEEecC--CCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceecc---HHHHHHHHHHc-C
Confidence 999977 888899999999999985 3566899999999986 8999999999999999999 88999999999 9
Q ss_pred eEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHH--------------
Q 012095 263 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-------------- 328 (471)
Q Consensus 263 ~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~-------------- 328 (471)
++||+||+|.... ... ... ..+..+++.|++|.++ ++.++||+++++++++.+....
T Consensus 169 ~~li~Dea~~~~~----~~~---~~~-~~~~d~~~~s~~K~l~-~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg 239 (411)
T 3nnk_A 169 ALFYTDATASLGG----NPL---ETD-VWGLDAVSAGMQKCLG-GPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDG 239 (411)
T ss_dssp CEEEEECTTTBTT----BCC---CTT-TTTCSEEECCSTTTTC-CCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCC
T ss_pred CEEEEECCcccCC----ccc---chh-ccCCcEEEecCccccC-CCCceEEEEECHHHHHHHhhcccccccccccccccc
Confidence 9999999987421 111 111 1345699999999853 3446899999999998887543
Q ss_pred ----------------------hcccCCCChHHHHHHHHHHhccCCChHH-HHHHHHHHHHHHHHHHHHhcCCCCCeeeC
Q 012095 329 ----------------------SQFTSGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGELEGVKMSE 385 (471)
Q Consensus 329 ----------------------~~~~~~~~~~~q~aa~~~L~~~~~~~~~-~~~~~~~~~~~r~~l~~~L~~~~g~~~~~ 385 (471)
.....+++...+.++.++++. ..++ +++++++++++++++.+.|+++ |+++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 315 (411)
T 3nnk_A 240 DEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARL---ILQEGLDYGIARHKLHGDALVKGIQAM-GLETFG 315 (411)
T ss_dssp SSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCS
T ss_pred cCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeCC
Confidence 112235677777777777764 2444 7889999999999999999988 888776
Q ss_pred CCc---ceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe-ec--CHHHHHHHHHHHH
Q 012095 386 PQG---AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY-AA--SLTTLQAAVERIK 459 (471)
Q Consensus 386 p~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~-~~--~~e~i~~~~~~l~ 459 (471)
+.+ ++++++.+|+. .+..++.+.|++++||.+.+|.....++++|+++ +. +++++++++++|+
T Consensus 316 ~~~~~~~~~~~~~~~~~-----------~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~ 384 (411)
T 3nnk_A 316 DLKHKMNNVLGVVIPQG-----------INGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALE 384 (411)
T ss_dssp CGGGBCSSEEEEECCTT-----------CCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHH
T ss_pred CcccccccEEEEECCCC-----------CCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHH
Confidence 654 56788888743 2678999999887799999986555568999998 53 7899999999999
Q ss_pred HHHHhhCCC
Q 012095 460 KGLLTLRPG 468 (471)
Q Consensus 460 ~~l~~~~~~ 468 (471)
++++++...
T Consensus 385 ~~l~~~~~~ 393 (411)
T 3nnk_A 385 AVLNYLKFP 393 (411)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHcCCC
Confidence 999876543
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=292.55 Aligned_cols=329 Identities=14% Similarity=0.130 Sum_probs=246.0
Q ss_pred cCCCeEEcCCCC--CCCC-ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.++|++.|. .+++ +++.+.+++.+++..... ++ .....++++.+++.+.+.+| .+++++|+|+++++.
T Consensus 38 ~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~-~~-~~~~~~~~~~l~~~la~~~g----~~~v~~~~gg~~a~~ 111 (397)
T 2ord_A 38 KGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIH-CS-NLFWNRPQMELAELLSKNTF----GGKVFFANTGTEANE 111 (397)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSC-CC-TTSEEHHHHHHHHHHHHTTT----SCEEEEESSHHHHHH
T ss_pred CCCEEEECCccccccccCCCCHHHHHHHHHHHHhccc-Cc-cccCCHHHHHHHHHHHHhcC----CCeEEEeCCHHHHHH
Confidence 466789998873 3333 478899999998876322 21 11224566677777766665 479999999999999
Q ss_pred HHHHHhcC------CC-CeEEEcCCCCCCh-HHHHHHcCCE------------EEEecCCCCCCCcCCHHHHHhhhccCC
Q 012095 170 QAVLAVCS------PG-DEVIIPAPFWVSY-PEMARIADAT------------PVILPTRISENFLLDPKVLESKLTEKS 229 (471)
Q Consensus 170 ~~~~~l~~------~g-d~Vlv~~p~y~~~-~~~~~~~G~~------------~~~v~~~~~~~~~ld~e~l~~~l~~~~ 229 (471)
.+++++.. +| +.|++.+|+|++. ...++..|.+ ++.++. .|+++|++++++++
T Consensus 112 ~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~l~~~l~~~~ 184 (397)
T 2ord_A 112 AAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF-------NNVEDLRRKMSEDV 184 (397)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-------TCHHHHHHHCCTTE
T ss_pred HHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-------CCHHHHHHHhhcCe
Confidence 99988763 54 7899999999664 4477778876 666764 28999999998889
Q ss_pred cEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccc
Q 012095 230 RLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 308 (471)
Q Consensus 230 ~~i~i~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 308 (471)
++|++++|+||||. +++.+++++|+++|++| +++||+||+|.++.+.+. ...+..+....+ +.||||.++ +|
T Consensus 185 ~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~-~~~li~De~~~~~~~~g~-~~~~~~~~~~~d----~~s~sK~~~-~G 257 (397)
T 2ord_A 185 CAVFLEPIQGESGIVPATKEFLEEARKLCDEY-DALLVFDEVQCGMGRTGK-LFAYQKYGVVPD----VLTTAKGLG-GG 257 (397)
T ss_dssp EEEEECSEECTTTCEECCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSS-SSHHHHHTCCCS----EEEECGGGG-TT
T ss_pred EEEEEecccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEEecccCCccCcc-chhhhhhCCCCC----eeeeccccC-CC
Confidence 99999999999999 99999999999999999 999999999997765543 122222221112 228899998 99
Q ss_pred hhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCC----CCCeee
Q 012095 309 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EGVKMS 384 (471)
Q Consensus 309 ~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~----~g~~~~ 384 (471)
+|+||++++++++ .+.......+++.+++.|.++.++|+.. .+ ++++++++++++++.+.|+++ +.+...
T Consensus 258 ~r~G~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 331 (397)
T 2ord_A 258 VPIGAVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTVIKEL---TK--EGFLEEVEEKGNYLMKKLQEMKEEYDVVADV 331 (397)
T ss_dssp SCCEEEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHH---TS--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred cCeEEEEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 9999999998876 5543333456678999999999988752 11 456778888888888888764 222223
Q ss_pred CCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHHHHHH
Q 012095 385 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERIKKGL 462 (471)
Q Consensus 385 ~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~i~~~~~~l~~~l 462 (471)
.+. |.|+|++++.. .+..++.+.|++ +||.+.||. ++++|+++. .+++++++++++|++++
T Consensus 332 ~~~-g~~~~~~~~~~-----------~~~~~l~~~l~~-~gi~v~~~~----~~~iRis~~~~~~~e~i~~~~~~l~~~l 394 (397)
T 2ord_A 332 RGM-GLMIGIQFREE-----------VSNREVATKCFE-NKLLVVPAG----NNTIRFLPPLTVEYGEIDLAVETLKKVL 394 (397)
T ss_dssp EEE-TTEEEEEECTT-----------SCHHHHHHHHHH-TTEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEE-eEEEEEEECCh-----------HHHHHHHHHHHH-CCCEEccCC----CCEEEEECCcCCCHHHHHHHHHHHHHHH
Confidence 344 45577888642 157889999887 499999973 579999965 49999999999999988
Q ss_pred Hh
Q 012095 463 LT 464 (471)
Q Consensus 463 ~~ 464 (471)
++
T Consensus 395 ~~ 396 (397)
T 2ord_A 395 QG 396 (397)
T ss_dssp HT
T ss_pred hh
Confidence 64
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=285.54 Aligned_cols=325 Identities=13% Similarity=0.137 Sum_probs=249.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEE-EeCChHHHHHHHHHHhcCCCCeEEEc
Q 012095 107 FDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQIL-VSNGAKQSILQAVLAVCSPGDEVIIP 185 (471)
Q Consensus 107 ~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~-it~G~~~al~~~~~~l~~~gd~Vlv~ 185 (471)
.+.++.+.+++.+. ....|+ ....++.+.+.+.+.+.+|. ++++++ +++|+++++..+++++++|||+|+++
T Consensus 20 ~~~~~~v~~a~~~~---~~~~~~--~~~~~~~~~l~~~la~~~g~--~~~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~ 92 (416)
T 3isl_A 20 VEVDPRVLRVMSTP---VVGQFD--PAFTGIMNETMEMLRELFQT--KNRWAYPIDGTSRAGIEAVLASVIEPEDDVLIP 92 (416)
T ss_dssp CCCCHHHHHHTTSC---CCCTTS--HHHHHHHHHHHHHHHHHTTC--CCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEE
T ss_pred cCcCHHHHHHhccc---CCCCcc--HHHHHHHHHHHHHHHHHhCC--CCCcEEEecCcHHHHHHHHHHHhcCCCCEEEEe
Confidence 34466666655441 122332 22355666677777777774 456565 88899999999999999999999999
Q ss_pred CCCCCC--hHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc-cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC
Q 012095 186 APFWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 262 (471)
Q Consensus 186 ~p~y~~--~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~-~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~ 262 (471)
+|+|.+ +...++..|++++.++++.+ +.+|+++++++++ +++++|++++|+||||.+++ +++|.++|++| |
T Consensus 93 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~ 166 (416)
T 3isl_A 93 IYGRFGYLLTEIAERYGANVHMLECEWG--TVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHP---LKAIGEACRTE-D 166 (416)
T ss_dssp ESSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CHHHHHHHHHT-T
T ss_pred cCCcccHHHHHHHHhcCCeeEEEecCCC--CCCCHHHHHHHHhhCCCcEEEEEccCCCCceecC---HHHHHHHHHHc-C
Confidence 999987 66788999999999998743 4689999999998 68999999999999999999 88999999999 9
Q ss_pred eEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHH--------------
Q 012095 263 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-------------- 328 (471)
Q Consensus 263 ~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~-------------- 328 (471)
++||+|++|..... ... +. ..+..+++.|++|.++ ++.++||+++++++++.+...+
T Consensus 167 ~~li~D~a~~~~~~----~~~---~~-~~~~d~~~~s~~K~l~-g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~ 237 (416)
T 3isl_A 167 ALFIVDAVATIGGC----EVK---VD-EWKIDAAIGGTQKCLS-VPSGMAPITYNERVADVIAARKKVERGIATQADRAA 237 (416)
T ss_dssp CEEEEECTTTTTTS----CCC---TT-TTTCSEEECCSSSTTC-CCSSEEEEEECHHHHHHHHTC---------------
T ss_pred CEEEEECCccccCC----Ccc---hh-hcCCCEEEecCccccC-CCCCeEEEEECHHHHHHhhccccccccccccccchh
Confidence 99999999874221 111 11 1345699999999753 4446899999999998876321
Q ss_pred ------------------------hcccCCCChHHHHHHHHHHhccCCChHH-HHHHHHHHHHHHHHHHHHhcCCCCCee
Q 012095 329 ------------------------SQFTSGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGELEGVKM 383 (471)
Q Consensus 329 ------------------------~~~~~~~~~~~q~aa~~~L~~~~~~~~~-~~~~~~~~~~~r~~l~~~L~~~~g~~~ 383 (471)
.....+++...+.++.++++. ..++ +++++++++++++++.+.|+++ |+++
T Consensus 238 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~ 313 (416)
T 3isl_A 238 LSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRL---VLEEGLETRFERHRHHEAALAAGIKAM-GLRL 313 (416)
T ss_dssp ---CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCB
T ss_pred ccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEe
Confidence 111235677777777777775 3455 8899999999999999999986 8888
Q ss_pred eCCCc---ceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec---CHHHHHHHHHH
Q 012095 384 SEPQG---AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAAVER 457 (471)
Q Consensus 384 ~~p~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~---~~e~i~~~~~~ 457 (471)
..+.+ +.++++.+++. .+..++.+.|++++||.+.+|.....++++|+++.. +++++++++++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~ 382 (416)
T 3isl_A 314 FGDDSCKMPVVTCVEIPGG-----------IDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAG 382 (416)
T ss_dssp CSCGGGBCTTEEEEECCTT-----------CCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHH
T ss_pred ccCccccCCcEEEEeCCCC-----------CCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHH
Confidence 77654 56678888643 268899999988779999999866667899999943 44459999999
Q ss_pred HHHHHHhhCCC
Q 012095 458 IKKGLLTLRPG 468 (471)
Q Consensus 458 l~~~l~~~~~~ 468 (471)
|+++++++...
T Consensus 383 l~~~~~~~~~~ 393 (416)
T 3isl_A 383 LEAVLLRHNAG 393 (416)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHcCCC
Confidence 99999876543
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=282.80 Aligned_cols=322 Identities=17% Similarity=0.236 Sum_probs=246.1
Q ss_pred CCCCCCCC-h---HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh-c
Q 012095 102 AGEPDFDT-P---VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-C 176 (471)
Q Consensus 102 ~g~~~~~~-p---~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l-~ 176 (471)
.++|+|++ | +.+++++.+++..+...|.+..+..++++.++++++ ..++|++++| ++++..+++++ +
T Consensus 4 ~~~p~f~~~p~~~~~~~~a~~~~l~~~~~~~~~~~~~~~l~~~la~~~~-------~~~~i~~~sG-t~al~~~l~~l~~ 75 (388)
T 1b9h_A 4 RKAPEFPAWPQYDDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHHG-------AAHALAVTNG-THALELALQVMGV 75 (388)
T ss_dssp -CCCCCCCSSCCCHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHTT-------CSEEEEESCH-HHHHHHHHHHTTC
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHcCCeeecCCHHHHHHHHHHHHHhC-------CCeEEEeCCH-HHHHHHHHHHcCC
Confidence 45788887 7 899999999988765567788889999999999863 2256777776 89999999999 8
Q ss_pred CCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHH
Q 012095 177 SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARI 256 (471)
Q Consensus 177 ~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l 256 (471)
++||+|+++.|+|+++...++..|++++.++++++ +|.+|+++|++++++++++|+ |+||||.+.+ +++|.++
T Consensus 76 ~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~---l~~i~~l 148 (388)
T 1b9h_A 76 GPGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAA-TYNLDPEAVAAAVTPRTKVIM---PVHMAGLMAD---MDALAKI 148 (388)
T ss_dssp CTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTT-TCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCC---HHHHHHH
T ss_pred CCcCEEEECCCccHHHHHHHHHcCCEEEEEecCCC-cCCCCHHHHHHhcCcCceEEE---EeCCccCcCC---HHHHHHH
Confidence 99999999999999999999999999999999753 478999999999988888766 9999999998 8999999
Q ss_pred HHhCCCeEEEEccCCCcc-ccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHH-H--HHHHHHHHhc--
Q 012095 257 VAKHPRLLVLSDEIYEHI-IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-F--VAACNKIQSQ-- 330 (471)
Q Consensus 257 ~~~~~~~~ii~De~y~~~-~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~-~--i~~l~~~~~~-- 330 (471)
|++| +++||+|++|..+ .+.+. .+..+ .++.+.||||..+++|.|+||++++++ + ++.+......
T Consensus 149 a~~~-~~~li~D~a~~~g~~~~~~---~~~~~-----~~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~ 219 (388)
T 1b9h_A 149 SADT-GVPLLQDAAHAHGARWQGK---RVGEL-----DSIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGR 219 (388)
T ss_dssp HHHH-TCCBCEECTTCTTCEETTE---EGGGS-----SSCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTC
T ss_pred HHHc-CCEEEEecchhcCCccCCe---ecccc-----cceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHHhCCC
Confidence 9999 9999999999863 33221 12222 158899999777777889999999876 5 5666544321
Q ss_pred -------------ccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC------CCcceE
Q 012095 331 -------------FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE------PQGAFY 391 (471)
Q Consensus 331 -------------~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~------p~~g~~ 391 (471)
.++.++.+...++... .+++++.+++++++++++.+.|++++|+.+.. +.++++
T Consensus 220 ~~~~~~~~~~~~g~~~~~~~~~~a~~~~~-------~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 292 (388)
T 1b9h_A 220 PRDDRRYFHKIAGSNMRLNEFSASVLRAQ-------LARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYM 292 (388)
T ss_dssp CTTCSSCCCCSCCCBCBCBHHHHHHHHHH-------HTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSE
T ss_pred CccCccceeecccccCCcCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEE
Confidence 0111333332222222 34467788888999999999999988888765 356788
Q ss_pred EeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC----------C-------------------CCcEEE
Q 012095 392 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG----------D-------------------DTCIRI 442 (471)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~----------~-------------------~~~iRi 442 (471)
+|++++...+ .+..++.+.|.++ ||.+.++.... . .+.+||
T Consensus 293 ~~~~~~~~~~---------~~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 362 (388)
T 1b9h_A 293 AMFRIPGLTE---------ERRNALVDRLVEA-GLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWL 362 (388)
T ss_dssp EEEECTTCCH---------HHHHHHHHHHHHT-TCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEE
T ss_pred EEEEeCCcCc---------ccHHHHHHHHHHC-CCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEe
Confidence 9999874200 0456788888865 99998875321 0 125999
Q ss_pred Eeec---CHHHHHHHHHHHHHHHHh
Q 012095 443 SYAA---SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 443 s~~~---~~e~i~~~~~~l~~~l~~ 464 (471)
++.. ++++++++++.|++++++
T Consensus 363 ~~~~~~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 363 HHRVLLAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp EGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 9875 789999999999998764
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=279.99 Aligned_cols=332 Identities=14% Similarity=0.128 Sum_probs=249.2
Q ss_pred CCCeE--EcCCCCCCCCChHHHHHHHHHHHHcCCCCCCC-CCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHH
Q 012095 94 GVSVI--RLAAGEPDFDTPVLIAEAGINAIREGFTRYTP-NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQ 170 (471)
Q Consensus 94 g~~~i--~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~-~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~ 170 (471)
|.+++ +|+.|+|++++|+.+++++.+++..+ .|++ ..+..+|+++++++++ .+++++|+|+++++..
T Consensus 13 g~~~~~~~l~~~~p~~~~p~~~~~a~~~~~~~~--~y~~~~~~~~~l~~~la~~~~--------~~~v~~~~ggt~al~~ 82 (424)
T 2po3_A 13 GPAAFDQPLLVGRPNRIDRARLYERLDRALDSQ--WLSNGGPLVREFEERVAGLAG--------VRHAVATCNATAGLQL 82 (424)
T ss_dssp CCCSCSSCEETTCCCCCCHHHHHHHHHHHHHHT--CCSSSCHHHHHHHHHHHHHHT--------SSEEEEESCHHHHHHH
T ss_pred CCccccccccccCCCCCChHHHHHHHHHHHhcC--CcccCCHHHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHH
Confidence 44444 68999999999999999999988764 5866 6788999999999973 2589999999999999
Q ss_pred HHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHH
Q 012095 171 AVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLL 250 (471)
Q Consensus 171 ~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l 250 (471)
+++++. +||+|++++|+|+++...++..|++++.+++++ ++|.+|+++|++++++++++|+++ ||||...+ +
T Consensus 83 ~l~~l~-~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~v~~~---~~tG~~~~---l 154 (424)
T 2po3_A 83 LAHAAG-LTGEVIMPSMTFAATPHALRWIGLTPVFADIDP-DTGNLDPDQVAAAVTPRTSAVVGV---HLWGRPCA---A 154 (424)
T ss_dssp HHHHHT-CCSEEEEESSSCTHHHHHHHHTTCEEEEECBCT-TTSSBCHHHHGGGCCTTEEEEEEE---CGGGCCCC---H
T ss_pred HHHHcC-CCCEEEECCCccHHHHHHHHHcCCEEEEEecCC-CcCCcCHHHHHHhhCcCCcEEEEE---CCCCCcCC---H
Confidence 999885 899999999999999999999999999999875 467899999999998889988875 48999877 9
Q ss_pred HHHHHHHHhCCCeEEEEccCCC-ccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcC-HHHHHHHHHHH
Q 012095 251 DEIARIVAKHPRLLVLSDEIYE-HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQ 328 (471)
Q Consensus 251 ~~i~~l~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~-~~~i~~l~~~~ 328 (471)
++|.++|++| +++||+||+|. ++.+++. ++..+ .+ +++.||||..+++|+|+||++++ +++++.+....
T Consensus 155 ~~i~~la~~~-~~~li~Dea~~~g~~~~~~---~~~~~---~d--i~~~S~sk~K~l~~~~~G~~v~~~~~l~~~l~~~~ 225 (424)
T 2po3_A 155 DQLRKVADEH-GLRLYFDAAHALGCAVDGR---PAGSL---GD--AEVFSFHATKAVNAFEGGAVVTDDADLAARIRALH 225 (424)
T ss_dssp HHHHHHHHHT-TCEEEEECTTCTTCEETTE---ETTSS---SS--EEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCEEEEECccccCCeECCe---ecccc---cC--EEEEeCCCCCCccCCCCeEEEeCCHHHHHHHHHHH
Confidence 9999999999 99999999999 4655432 22222 12 89999996666677999999999 89999888765
Q ss_pred hcccCC---------CChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC-CCcc---eEE-eE
Q 012095 329 SQFTSG---------ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGA---FYL-FI 394 (471)
Q Consensus 329 ~~~~~~---------~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~-p~~g---~~~-~~ 394 (471)
.....+ ...+.+.++..++.. .+++++..++.+++++++.+.|.+++|+.+.. |.++ +++ ++
T Consensus 226 ~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i 301 (424)
T 2po3_A 226 NFGFDLPGGSPAGGTNAKMSEAAAAMGLTS----LDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIV 301 (424)
T ss_dssp BTTTTCTTCCTTCCCBCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEE
T ss_pred hcCccccccccccCcCCCcCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEE
Confidence 432111 001223333333332 34566777888888889999999888888765 4443 333 36
Q ss_pred ecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC--------------CCCc-------EEEEeec--CHHHH
Q 012095 395 DFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--------------DDTC-------IRISYAA--SLTTL 451 (471)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~--------------~~~~-------iRis~~~--~~e~i 451 (471)
.+++.. .+ .+..++.+.|.+ .||.+.+..... .+++ ||+++.. +++++
T Consensus 302 ~~~~~~----~~----~~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i 372 (424)
T 2po3_A 302 EIDEAT----TG----IHRDLVMEVLKA-EGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDI 372 (424)
T ss_dssp EECHHH----HS----SCHHHHHHHHHH-TTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHH
T ss_pred EECCcc----ch----hhHHHHHHHHHH-CCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHH
Confidence 665300 00 157788887765 599998732100 0122 6676333 89999
Q ss_pred HHHHHHHHHHHHhh
Q 012095 452 QAAVERIKKGLLTL 465 (471)
Q Consensus 452 ~~~~~~l~~~l~~~ 465 (471)
++++++|++++++.
T Consensus 373 ~~~~~~L~~~~~~~ 386 (424)
T 2po3_A 373 RRVADLLRLCATRG 386 (424)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999988653
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-34 Score=287.73 Aligned_cols=334 Identities=13% Similarity=0.138 Sum_probs=250.1
Q ss_pred cCCCeEEcCCCC--CCCC-ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.++|++.|. ..++ .++.+.+++.+++.+... ++ .....+..+.+++++.+.+| .++|++|+|+++++.
T Consensus 37 ~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~-~~-~~~~~~~~~~l~~~la~~~~----~~~v~~~~gg~~a~~ 110 (406)
T 4adb_A 37 QGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWH-TG-NGYTNEPVLRLAKKLIDATF----ADRVFFCNSGAEANE 110 (406)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSC-CC-TTSCCHHHHHHHHHHHHHSS----CSEEEEESSHHHHHH
T ss_pred CCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccc-cc-CCcCCHHHHHHHHHHHhhCC----CCeEEEeCcHHHHHH
Confidence 577899999883 3333 378899999998865322 11 11223456666666666655 359999999999999
Q ss_pred HHHHHhcC-------CC-CeEEEcCCCCCChHHHHHHcCC-------------EEEEecCCCCCCCcCCHHHHHhhhccC
Q 012095 170 QAVLAVCS-------PG-DEVIIPAPFWVSYPEMARIADA-------------TPVILPTRISENFLLDPKVLESKLTEK 228 (471)
Q Consensus 170 ~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~ld~e~l~~~l~~~ 228 (471)
.++++++. +| |.|++++|+|+.+...+...+. .+..+|. .|+++|+++++++
T Consensus 111 ~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~ 183 (406)
T 4adb_A 111 AALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY-------NDINSASALIDDS 183 (406)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-------TCHHHHHTTCSTT
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-------CcHHHHHHHhcCC
Confidence 99998865 66 9999999999998766655554 3334432 3899999999988
Q ss_pred CcEEEEcCCCCCcccCC--CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCc
Q 012095 229 SRLLILCSPSNPTGSVY--PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (471)
Q Consensus 229 ~~~i~i~~p~NPtG~~~--~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~ 306 (471)
+++|+++ |+||||.++ +.+++++|+++|++| |++||+||+|.++.+.+... .+.... ...+++ ||||.++
T Consensus 184 ~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~-~~~li~De~~~~~~~~g~~~-~~~~~~-~~~d~~---t~sK~~~- 255 (406)
T 4adb_A 184 TCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRH-NALLIFDEVQTGVGRTGELY-AYMHYG-VTPDLL---TTAKALG- 255 (406)
T ss_dssp EEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSS-HHHHHT-CCCSEE---EECGGGG-
T ss_pred eEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCccchhH-HHHhcC-CCCCEE---Eechhhc-
Confidence 9988888 999999988 999999999999999 99999999999876654321 111111 122333 6899999
Q ss_pred cchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCC----CCCe
Q 012095 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EGVK 382 (471)
Q Consensus 307 ~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~----~g~~ 382 (471)
+|+|+||+++++++++.+.......+++.+++.|.++.++|+... . ++..++++++++++.+.|+++ +.+.
T Consensus 256 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 330 (406)
T 4adb_A 256 GGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELIN---T--PEMLNGVKQRHDWFVERLNTINHRYGLFS 330 (406)
T ss_dssp TTSCCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHS---S--HHHHHHHHHHHHHHHHHHHHHHHHHCCEE
T ss_pred CCCCeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHH---h--cCHHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence 999999999999999888776666677899999999999987521 1 566777788888888887764 1121
Q ss_pred eeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHHHH
Q 012095 383 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERIKK 460 (471)
Q Consensus 383 ~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~i~~~~~~l~~ 460 (471)
.. +..++++|+.++.... .+..++++.|+++ ||.+.|+. ++++|++++ .+++++++++++|++
T Consensus 331 ~~-~~~g~~~~~~~~~~~~---------~~~~~~~~~l~~~-gi~v~~~~----~~~iRi~~~~~~~~e~i~~~~~~l~~ 395 (406)
T 4adb_A 331 EV-RGLGLLIGCVLNADYA---------GQAKQISQEAAKA-GVMVLIAG----GNVVRFAPALNVSEEEVTTGLDRFAA 395 (406)
T ss_dssp EE-EEETTEEEEEECTTTT---------TCHHHHHHHHHHT-TEECEESS----TTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EE-EEEEEEEEEEEeCCcH---------HHHHHHHHHHHHC-CcEEeecC----CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 12 2346668888875310 1578899998877 99999965 679999654 499999999999999
Q ss_pred HHHhhCC
Q 012095 461 GLLTLRP 467 (471)
Q Consensus 461 ~l~~~~~ 467 (471)
+++++..
T Consensus 396 ~l~~~~~ 402 (406)
T 4adb_A 396 ACEHFVS 402 (406)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9987654
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-34 Score=289.41 Aligned_cols=350 Identities=12% Similarity=0.085 Sum_probs=242.5
Q ss_pred cCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.++|++.|.+ +++. ++.+.+++.+++.+... + ...+..+++..+++.+.+.++. ++++|++|+|+++++.
T Consensus 41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~-~~~~~~~~~~~l~~~la~~~~~--~~~~v~~~~gg~ea~~ 116 (433)
T 1zod_A 41 DGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH-L-FSEMLSRPVVDLATRLANITPP--GLDRALLLSTGAESNE 116 (433)
T ss_dssp TCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCC-C-CTTCCCHHHHHHHHHHHHHSCT--TCCEEEEESCHHHHHH
T ss_pred CCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCcc-c-ccccCCHHHHHHHHHHHHhCCC--CcCEEEEeCchHHHHH
Confidence 4677899988774 4443 78999999998876422 2 2334456778888888877774 5689999999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCChHHHHHHc--------------CCEEEEecCCCCCCCc--------CCHHHHHhhh
Q 012095 170 QAVLAVC--SPGDEVIIPAPFWVSYPEMARIA--------------DATPVILPTRISENFL--------LDPKVLESKL 225 (471)
Q Consensus 170 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~--------------G~~~~~v~~~~~~~~~--------ld~e~l~~~l 225 (471)
.+++.+. ..+|.|++.+|+|+++...+... |+..+.++......|+ +|+++|++++
T Consensus 117 ~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l 196 (433)
T 1zod_A 117 AAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLI 196 (433)
T ss_dssp HHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHH
Confidence 9988653 23589999999998766543322 3333333321111222 4699999988
Q ss_pred cc----CCcEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCc-cccccCCCCCCceEEEe
Q 012095 226 TE----KSRLLILCSP-SNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWERTLTVN 298 (471)
Q Consensus 226 ~~----~~~~i~i~~p-~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~~~~~~~i~~~ 298 (471)
++ ++++ ++++| +||||. +.+++++++|.++|++| +++||+||+|.++.+.+... ....... .. +.
T Consensus 197 ~~~~~~~~~~-vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~DEv~~~~g~~g~~~~~~~~~~~---~d---i~ 268 (433)
T 1zod_A 197 DRQSSGNLAA-FIAEPILSSGGIIELPDGYMAALKRKCEAR-GMLLILDEAQTGVGRTGTMFACQRDGVT---PD---IL 268 (433)
T ss_dssp HHHCCSCEEE-EEECSEETTTTCEECCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSSTHHHHTCC---CS---EE
T ss_pred HhcCCCCeEE-EEEccccCCCCcccCCHHHHHHHHHHHHHh-CCEEEEeccccCCCcCchHhHHhhcCCC---CC---EE
Confidence 63 4444 45566 588995 67899999999999999 99999999999875444211 1111111 11 45
Q ss_pred cCCcccCccchhheeeEcCHHHHHHHHHHHhc--ccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhc
Q 012095 299 GFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 376 (471)
Q Consensus 299 S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~--~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~ 376 (471)
||||.++ .|+|+||+++++++++.+...... .+++.++++|.++.++|+.. ++ +...++++++++++.+.|+
T Consensus 269 s~sK~~~-~G~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~---~~--~~~~~~~~~~~~~l~~~l~ 342 (433)
T 1zod_A 269 TLSKTLG-AGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVV---QR--DGLVARANVMGDRLRRGLL 342 (433)
T ss_dssp EECHHHH-TTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHH---HH--TTHHHHHHHHHHHHHHHHH
T ss_pred Eeccccc-CCCCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHHHHHH
Confidence 8999999 599999999999999988763222 56678999999998888641 11 2345556666666666665
Q ss_pred CC----CCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHH
Q 012095 377 EL----EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTT 450 (471)
Q Consensus 377 ~~----~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~ 450 (471)
++ +.+...++.|. |+|+++++....... ...+..++++.|+++ ||.+.||..|+.++++||+++ .++++
T Consensus 343 ~l~~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~---~~~~~~~~~~~l~~~-Gv~v~~~~~~~~~~~lRi~~~~~~t~~~ 417 (433)
T 1zod_A 343 DLMERFDCIGDVRGRGL-LLGVEIVKDRRTKEP---ADGLGAKITRECMNL-GLSMNIVQLPGMGGVFRIAPPLTVSEDE 417 (433)
T ss_dssp HHHHHCTTEEEEEEETT-EEEEEEEEETTTTEE---CTTHHHHHHHHHHHT-TEECCEECCTTSCCEEEECCCTTCCHHH
T ss_pred HHHHhCCCeEEEEEEEE-EEEEEEecCccccCC---ChHHHHHHHHHHHHC-CCeEeccCCCCCCCEEEEECCcCCCHHH
Confidence 53 44444445544 567887632100000 001367889988865 999999988875689999765 49999
Q ss_pred HHHHHHHHHHHHHhh
Q 012095 451 LQAAVERIKKGLLTL 465 (471)
Q Consensus 451 i~~~~~~l~~~l~~~ 465 (471)
+++++++|+++++++
T Consensus 418 i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 418 IDLGLSLLGQAIERA 432 (433)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998764
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-34 Score=293.35 Aligned_cols=369 Identities=16% Similarity=0.168 Sum_probs=260.5
Q ss_pred ccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCC------CCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHH
Q 012095 70 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP------DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICH 143 (471)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~------~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~ 143 (471)
.++..+.++++..+...+..+...|.++++|+.|.+ ++++ +.+.+++.+++..+...|++..+..+|++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~ylD~~~~~~~-~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~ 87 (467)
T 1ax4_A 9 FRIKMVEKIRVPSREEREAALKEAGYNPFLLPSSAVYIDLLTDSGT-NAMSDHQWAAMITGDEAYAGSRNYYDLKDKAKE 87 (467)
T ss_dssp EEEEEEEECCCCCHHHHHHHHHHTTSCGGGSCGGGCSEECSCSSSC-CCEEHHHHHHHHTCCCCSSSCHHHHHHHHHHHH
T ss_pred hhhceeecccccchhHHHHHHHhcCcCcccCCCCceeeecccCcCC-HHHHHHHHHHHhhcccccccCccHHHHHHHHHH
Confidence 455666666665566666667677777777777764 2222 567777777776666689888888999999999
Q ss_pred HHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcC----CCCe---EEEcCCCCCChHHHHHHcCCEEEEecCCC----C-
Q 012095 144 KLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS----PGDE---VIIPAPFWVSYPEMARIADATPVILPTRI----S- 211 (471)
Q Consensus 144 ~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~----~gd~---Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~----~- 211 (471)
++. .++|++|+|+++++..+++++++ +||+ |+++.+.|..+...+...|++++.++... +
T Consensus 88 ~~~--------~~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 159 (467)
T 1ax4_A 88 LFN--------YDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSET 159 (467)
T ss_dssp HHC--------CCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTS
T ss_pred HcC--------CCcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEeccccchhhHHHhccCCceecccccccccccc
Confidence 872 36999999999999999999988 9999 99987777777888889999998876532 1
Q ss_pred ---CCCcCCHHHHHhhhcc----CCcEEEEcCCCCCc-ccCCCHHHHHHHHHHHHhCCCeEEEEccCCCc--c-------
Q 012095 212 ---ENFLLDPKVLESKLTE----KSRLLILCSPSNPT-GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH--I------- 274 (471)
Q Consensus 212 ---~~~~ld~e~l~~~l~~----~~~~i~i~~p~NPt-G~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~--~------- 274 (471)
.++.+|+++|++++++ ++++|++++||||| |.+++.+++++|+++|++| |++||+||++.. .
T Consensus 160 ~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~-gi~li~De~~~~~~~~~~~~~~ 238 (467)
T 1ax4_A 160 YDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQH-GIFVVMDSARFCENAYFIKARD 238 (467)
T ss_dssp CCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHH-TCCEEEECTTHHHHHHHHHHHC
T ss_pred cCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHc-CCEEEEEchhhhhcchhccccc
Confidence 1346899999999974 68999999999999 8999999999999999999 999999998643 1
Q ss_pred -ccCCCCccccccCC----CCCCceEEEecCCcccCcc-chhheeeEcC-H-HHHHHHHHHHhcc----cCC-CChHHHH
Q 012095 275 -IYAPATHTSFASLP----GMWERTLTVNGFSKAFAMT-GWRLGYIAGP-K-HFVAACNKIQSQF----TSG-ASSISQK 341 (471)
Q Consensus 275 -~~~~~~~~~~~~~~----~~~~~~i~~~S~SK~~g~~-G~R~G~v~~~-~-~~i~~l~~~~~~~----~~~-~~~~~q~ 341 (471)
.+.+. ++..+. ...+ +++.|+||.+|++ | ||++++ + ++++.+......+ .++ .+...+.
T Consensus 239 ~~~~~~---~~~~~~~~~~~~~d--~~~~s~sK~~g~~~G---g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (467)
T 1ax4_A 239 PKYKNA---TIKEVIFDMYKYAD--ALTMSAKKDPLLNIG---GLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMA 310 (467)
T ss_dssp GGGTTC---CHHHHHHHHGGGCS--EEEEETTSTTCCSSC---EEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHH
T ss_pred cccCCC---chhhhhhhhccccc--eEEEeccccCCCCcc---eEEEeCCHHHHHHHHHhhccccccccccCCccchHHH
Confidence 12221 111110 0012 5668999999876 4 777777 6 8888877654321 122 2333333
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccC-CcccCCCCCCCHHHHHHHH
Q 012095 342 AGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG-SEAEGFGKIENSESLCRYL 420 (471)
Q Consensus 342 aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L 420 (471)
++..+|.... ..+.+ +...++++++.+.|.+ +|+.+..|.+++++|+++..... ....+ .+..++++.|
T Consensus 311 a~~~~l~~~~-~~~~~----~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L 380 (467)
T 1ax4_A 311 AMVQGLEEGT-EEEYL----HYRIGQVKYLGDRLRE-AGIPIQYPTGGHAVFVDCKKLVPQIPGDQ----FPAQAVINAL 380 (467)
T ss_dssp HHHHHHHHTT-CHHHH----HHHHHHHHHHHHHHHH-TTCCBCSSCCSSEEEEESTTTCTTSCGGG----CHHHHHHHHH
T ss_pred HHHHHHHHhh-hhhHH----HHHHHHHHHHHHHHHh-CCCCcccCCCceEEEEehhhhccccccCC----CCHHHHHHHH
Confidence 3333454311 11222 2334667778888877 48888788999999998322100 00000 1467899988
Q ss_pred HHcCCEEEEC-CCCC-------C-----CCCcEEEEee---cCHHHHHHHHHHHHHHHHhhC
Q 012095 421 LDKAQVALVP-GDAF-------G-----DDTCIRISYA---ASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 421 l~~~gV~v~p-g~~f-------~-----~~~~iRis~~---~~~e~i~~~~~~l~~~l~~~~ 466 (471)
+++.||.+.| |..+ + ..+++||++. .+++++++++++|++++++.+
T Consensus 381 ~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~~ 442 (467)
T 1ax4_A 381 YLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFA 442 (467)
T ss_dssp HHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred HHhcCceeeecCccccccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHhhh
Confidence 5556999999 5431 1 1378999998 489999999999999887653
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-33 Score=284.78 Aligned_cols=358 Identities=12% Similarity=0.030 Sum_probs=257.9
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+++||++.|. ..++. ++.+++++.+++.+..+.|+...+..++++++++++.+.++ ...++|++|+|+++++.
T Consensus 49 ~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~gGseA~~ 126 (460)
T 3gju_A 49 NGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGTEASITLAKMIIDRAP--KGMSRVYFGLSGSDANE 126 (460)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCCCTTCCCHHHHHHHHHHHHHSC--TTEEEEEEESSHHHHHH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHhhCC--CCcCEEEEeCchHHHHH
Confidence 577899999883 44544 68999999998877555666666777899999999988765 36679999999999999
Q ss_pred HHHHHhcC--------CCCeEEEcCCCCCChHHHHHHcCC-------------EEEEecCCC--C-CCCcCC--------
Q 012095 170 QAVLAVCS--------PGDEVIIPAPFWVSYPEMARIADA-------------TPVILPTRI--S-ENFLLD-------- 217 (471)
Q Consensus 170 ~~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~G~-------------~~~~v~~~~--~-~~~~ld-------- 217 (471)
.+++++.. +++.|++.+|+|+++...+...+. .+..++... . ++++.+
T Consensus 127 ~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~ 206 (460)
T 3gju_A 127 TNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHC 206 (460)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHH
Confidence 99998874 459999999999988766554432 234444321 0 112233
Q ss_pred HHHHHhhhc----cCCcEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCC
Q 012095 218 PKVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292 (471)
Q Consensus 218 ~e~l~~~l~----~~~~~i~i~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 292 (471)
+++|+++++ +++++|+++.++|++|. +++++++++|.++|++| |++||+||+|.++...+... .......
T Consensus 207 ~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~g~gr~g~~~-~~~~~~~--- 281 (460)
T 3gju_A 207 ADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKY-DVLLVADEVVTGFGRLGTMF-GSDHYGI--- 281 (460)
T ss_dssp HHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSC-HHHHHTC---
T ss_pred HHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcccccc-hHhhcCC---
Confidence 688888886 34566666666778886 77899999999999999 99999999999875544211 1111111
Q ss_pred ceEEEecCCcccCccc-hhheeeEcCHHHHHHHHHH-------HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHH
Q 012095 293 RTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364 (471)
Q Consensus 293 ~~i~~~S~SK~~g~~G-~R~G~v~~~~~~i~~l~~~-------~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~ 364 (471)
...+.+|||.++ .| +|+||+++++++++.+... ....+++.++++|.++.++|+.... ++++++.++..
T Consensus 282 -~pdi~t~sK~l~-gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~ 358 (460)
T 3gju_A 282 -KPDLITIAKGLT-SAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDE-MDLVTNAGETG 358 (460)
T ss_dssp -CCSEEEECGGGT-TTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHH
T ss_pred -CCCeeeeehhhc-CCCCCeEEEEECHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHH
Confidence 111447899997 56 8999999999999998642 3345678899999999999974211 35577777777
Q ss_pred HHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCC-CCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEE
Q 012095 365 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFG-KIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 443 (471)
Q Consensus 365 ~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis 443 (471)
+..++.+.+.+.+++++....+.|.| +++.+...... ...+. ......++++.|+++ ||.+.|+. .++++||+
T Consensus 359 ~~~~~~l~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~---~~~~iRi~ 432 (460)
T 3gju_A 359 AYFRAELAKAVGGHKNVGEVRGDGML-AAVEFVADKDD-RVFFDASQKIGPQVATALAAS-GVIGRAMP---QGDILGFA 432 (460)
T ss_dssp HHHHHHHHHHHTTSTTEEEEEEETTE-EEEEECSBTTT-TBCCCGGGCHHHHHHHHHHHT-TEECEECS---SSCEEEEC
T ss_pred HHHHHHHHHHHhcCCCeEEEeeeeEE-EEEEEccCccc-cccccchHHHHHHHHHHHHHC-CeEEecCC---CCCEEEEE
Confidence 77888888888888666666666665 56666532100 00000 001256788888876 99999976 35799999
Q ss_pred ee--cCHHHHHHHHHHHHHHHHhhC
Q 012095 444 YA--ASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 444 ~~--~~~e~i~~~~~~l~~~l~~~~ 466 (471)
+. .+++++++++++|+++++++.
T Consensus 433 ~~~~~t~e~i~~~l~~l~~~l~~~~ 457 (460)
T 3gju_A 433 PPLCLTREQADIVVSKTADAVKSVF 457 (460)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 54 599999999999999998764
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=282.60 Aligned_cols=320 Identities=14% Similarity=0.165 Sum_probs=222.9
Q ss_pred EEcCCCCCCCCChHHHHHHHHHHHH---cCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHH
Q 012095 98 IRLAAGEPDFDTPVLIAEAGINAIR---EGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (471)
Q Consensus 98 i~l~~g~~~~~~p~~v~~a~~~~~~---~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~ 174 (471)
-.++.|+|++.+++.+.+++.+++. +....|....+..+..+.+.+.+.+.+|. + +.++++++++++..++++
T Consensus 23 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~--~~i~~~sG~~a~~~~l~~ 98 (398)
T 2rfv_A 23 STGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERG--E--AGLATASGISAITTTLLT 98 (398)
T ss_dssp TTCCSSCCCCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTC--S--EEEEESSHHHHHHHHHHH
T ss_pred CCCCcCCCCcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCC--C--cEEEECCHHHHHHHHHHH
Confidence 3588999999887655555554443 22223322222334444444444444563 2 555666666999999999
Q ss_pred hcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHH
Q 012095 175 VCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLL 250 (471)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~~~~----~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l 250 (471)
++++||.|++++|+|+++...+ +..|.+++.++.+ |++++++++++++++|++++|+||||.+++ +
T Consensus 99 ~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l 168 (398)
T 2rfv_A 99 LCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA-------KPEEIRAAMRPETKVVYIETPANPTLSLVD---I 168 (398)
T ss_dssp HCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-------SHHHHHHHCCTTEEEEEEESSBTTTTBCCC---H
T ss_pred HhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC-------CHHHHHHhcCCCCeEEEEECCCCCCCcccC---H
Confidence 9999999999999999988776 7889999999863 899999999989999999999999999998 9
Q ss_pred HHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhh-eeeEcCHHHHH-HHHHHH
Q 012095 251 DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVA-ACNKIQ 328 (471)
Q Consensus 251 ~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~-G~v~~~~~~i~-~l~~~~ 328 (471)
++|+++|++| |+++|+||+|..+.+.. . .. .+.++++.|+||.++.+|+|+ ||+++++++++ .+....
T Consensus 169 ~~i~~l~~~~-~~~li~De~~~~~~~~~----~-~~----~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~ 238 (398)
T 2rfv_A 169 ETVAGIAHQQ-GALLVVDNTFMSPYCQQ----P-LQ----LGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGL 238 (398)
T ss_dssp HHHHHHHHHT-TCEEEEECTTTCTTTCC----G-GG----GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHH
T ss_pred HHHHHHHHHc-CCEEEEECCCcccccCC----c-hh----hCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHH
Confidence 9999999999 99999999999765431 1 11 246699999999998899998 99999999887 666555
Q ss_pred hcc-cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC--------------CCCCeeeCC----Ccc
Q 012095 329 SQF-TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE--------------LEGVKMSEP----QGA 389 (471)
Q Consensus 329 ~~~-~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~--------------~~g~~~~~p----~~g 389 (471)
..+ +.+.+++.+.++.++|+. ...++++.. ++++.+.+.|.+ +|++++..| .++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~----~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~ 311 (398)
T 2rfv_A 239 KDITGGCMSPFNAWLTLRGVKT---LGIRMERHC----ENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGG 311 (398)
T ss_dssp HHTTCCCCCHHHHHHHHHHHTT---HHHHHHHHH----HHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCS
T ss_pred HhCCCCCCCHHHHHHHHhhhhh---HHHHHHHHH----HHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCce
Confidence 555 567889999999888874 234444433 344444444433 345554443 456
Q ss_pred eEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC----------------------C-CCcEEEEeec
Q 012095 390 FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG----------------------D-DTCIRISYAA 446 (471)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~----------------------~-~~~iRis~~~ 446 (471)
++ ++++++.. .+...+.+.+. ..|+.+.+|..|. . ++++|+|++.
T Consensus 312 ~~-~~~~~~~~----------~~~~~l~~~~~-~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~ 379 (398)
T 2rfv_A 312 II-SFEIAGGL----------EAGRRMINSVE-LCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGL 379 (398)
T ss_dssp EE-EEEETTHH----------HHHHHHHTTCS-SSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCS
T ss_pred EE-EEEEcCCH----------HHHHHHHHhCC-cceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecC
Confidence 64 55776310 01223333322 2388888886542 1 5799999998
Q ss_pred --CHHHHHHHHHHHHH
Q 012095 447 --SLTTLQAAVERIKK 460 (471)
Q Consensus 447 --~~e~i~~~~~~l~~ 460 (471)
++++++++++.|++
T Consensus 380 ~~~~~~i~~l~~al~~ 395 (398)
T 2rfv_A 380 EDPEDIINDLEHAIRK 395 (398)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 45566665555543
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=280.74 Aligned_cols=334 Identities=13% Similarity=0.087 Sum_probs=246.5
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.++|++.|. +.++. ++.+.+++.+++.+..+.| ..+..++++++++++.+.+| .++|++|+|+++++.
T Consensus 34 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~----~~~v~~~~gg~ea~~ 107 (395)
T 3nx3_A 34 KAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTS--NLYYNENIAAAAKNLAKASA----LERVFFTNSGTESIE 107 (395)
T ss_dssp TCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCC--TTSBCHHHHHHHHHHHHHHT----CSEEEEESSHHHHHH
T ss_pred CCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccc--cccCCHHHHHHHHHHHHhcC----CCeEEEeCCHHHHHH
Confidence 577899999984 45553 7899999999887643333 33456778888888877776 479999999999999
Q ss_pred HHHHHhc-------CCCCeEEEcCCCCCChHHHHHHcC-------------CEEEEecCCCCCCCcCCHHHHHhhhccCC
Q 012095 170 QAVLAVC-------SPGDEVIIPAPFWVSYPEMARIAD-------------ATPVILPTRISENFLLDPKVLESKLTEKS 229 (471)
Q Consensus 170 ~~~~~l~-------~~gd~Vlv~~p~y~~~~~~~~~~G-------------~~~~~v~~~~~~~~~ld~e~l~~~l~~~~ 229 (471)
.+++.+. .++|.|++.+|+|+++...+...+ .++..++. .|+++|++++++++
T Consensus 108 ~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~~ 180 (395)
T 3nx3_A 108 GAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY-------NDISSVEKLVNEKT 180 (395)
T ss_dssp HHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT-------TCHHHHHTTCCTTE
T ss_pred HHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC-------CCHHHHHHhccCCe
Confidence 9988775 457999999999988765444333 34455543 28999999998888
Q ss_pred cEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccc
Q 012095 230 RLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 308 (471)
Q Consensus 230 ~~i~i~~p~NPtG~~-~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 308 (471)
++|+++.++|++|.. .+++++++|.++|++| |+++|+||+|.++...+.. ...... +....+.||||.++ .|
T Consensus 181 ~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~Dev~~~~g~~g~~-~~~~~~----~~~~d~~t~sK~~~-~G 253 (395)
T 3nx3_A 181 CAIILESVQGEGGINPANKDFYKALRKLCDEK-DILLIADEIQCGMGRSGKF-FAYEHA----QILPDIMTSAKALG-CG 253 (395)
T ss_dssp EEEEEESEECTTSCEECCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGGGG----TCCCSEEEECGGGT-TT
T ss_pred EEEEEeCccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEEecccCCCcCCcc-hhHHhc----CCCCCEEEeccccc-CC
Confidence 888887777777765 7899999999999999 9999999999987544321 111111 11223557999998 59
Q ss_pred hhheeeEcCHHH-HHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC
Q 012095 309 WRLGYIAGPKHF-VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (471)
Q Consensus 309 ~R~G~v~~~~~~-i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~ 387 (471)
+|+||+++++++ ++.+.......+++.+++++.++.++|+... .++++++.++..+..++.+.+.+.+++.+....+.
T Consensus 254 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 332 (395)
T 3nx3_A 254 LSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFK-EEKILENVNKLTPYLEQSLDELINEFDFCKKRKGL 332 (395)
T ss_dssp SCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeE
Confidence 999999999998 8877665445567789999999999887421 13445555555555555555555555555554444
Q ss_pred cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012095 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 388 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~ 464 (471)
|.|+|+.+++. .+..++++.|+++ ||.+.|+. ++++|+++.. +++++++++++|++++++
T Consensus 333 -g~~~~~~~~~~-----------~~~~~~~~~l~~~-Gi~v~~~~----~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 333 -GFMQGLSLDKS-----------VKVAKVIQKCQEN-ALLLISCG----ENDLRFLPPLILQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp -TTEEEEEECTT-----------SCHHHHHHHHHHT-TEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred -EEEEEEEeCCc-----------chHHHHHHHHHHC-CCEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 44578888753 1578899988876 99999974 6799998664 899999999999999875
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-33 Score=283.31 Aligned_cols=332 Identities=12% Similarity=0.139 Sum_probs=246.7
Q ss_pred cCCCeEEcCCCC--CCCC-ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.+||++.|. ..++ .++.+.+++.+++.+.. .+ ...+..++++.+++.+.+.+| .++|++|+|+++++.
T Consensus 55 ~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~-~~-~~~~~~~~~~~l~~~la~~~g----~~~v~~~~ggteA~~ 128 (420)
T 2pb2_A 55 QGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLW-HT-SNVFTNEPALRLGRKLIDATF----AERVLFMNSGTEANE 128 (420)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCC-CC-CTTSCCHHHHHHHHHHHHHSS----CSEEEEESSHHHHHH
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhcc-cc-cCccCCHHHHHHHHHHHhhCC----CCeEEEeCCHHHHHH
Confidence 577899999884 3333 47889999999886532 22 222345777888888877765 479999999999999
Q ss_pred HHHHHhcC-------CC-CeEEEcCCCCCChHH-HHHHcCCE------------EEEecCCCCCCCcCCHHHHHhhhccC
Q 012095 170 QAVLAVCS-------PG-DEVIIPAPFWVSYPE-MARIADAT------------PVILPTRISENFLLDPKVLESKLTEK 228 (471)
Q Consensus 170 ~~~~~l~~-------~g-d~Vlv~~p~y~~~~~-~~~~~G~~------------~~~v~~~~~~~~~ld~e~l~~~l~~~ 228 (471)
.+++++.. +| +.|++.+|+|+++.. .....|.+ +..++. .|+++|+++++++
T Consensus 129 ~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~le~~i~~~ 201 (420)
T 2pb2_A 129 TAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF-------NDLHAVKAVMDDH 201 (420)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT-------TCHHHHHHHCCTT
T ss_pred HHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC-------CCHHHHHHHhccC
Confidence 99998875 77 589999999987754 44555543 445543 2899999999888
Q ss_pred CcEEEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCcc-ccccCCCCCCceEEEecCCcccCc
Q 012095 229 SRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT-SFASLPGMWERTLTVNGFSKAFAM 306 (471)
Q Consensus 229 ~~~i~i~~p~NPtG-~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~~~i~~~S~SK~~g~ 306 (471)
+++|++++++|++| .+++.+++++|.++|++| |++||+||+|.++.+.+.... ....+. .+++ ||||.++
T Consensus 202 ~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~-gi~lI~Dev~~g~~~~g~~~~~~~~~~~---~dii---t~sK~l~- 273 (420)
T 2pb2_A 202 TCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEH-QALLVFDEVQCGMGRTGDLFAYMHYGVT---PDIL---TSAKALG- 273 (420)
T ss_dssp EEEEEECSEETTTTSEECCHHHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSSHHHHHTCC---CSEE---EECGGGG-
T ss_pred ceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHc-CCEEEEEcCCcCcccCCcHHHHHhcCCC---CCeE---Eeccccc-
Confidence 99999888889888 479999999999999999 999999999987755443211 111221 2233 7899999
Q ss_pred cchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCC----CCCe
Q 012095 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EGVK 382 (471)
Q Consensus 307 ~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~----~g~~ 382 (471)
+|+|+||+++++++++.+.......+++.+++++.++.++|+... + +++.++++++++++.+.|+++ +.+.
T Consensus 274 ~G~~iG~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~---~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 348 (420)
T 2pb2_A 274 GGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIIN---T--PEVLQGIHTKRQQFVQHLQAIDEQFDIFS 348 (420)
T ss_dssp TTSCCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHHHHHHS---S--HHHHHHHHHHHHHHHHHHHHHHHHHCCEE
T ss_pred CCCceEEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHH---h--ccHHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 999999999999988877654444566789999999999887521 1 356677778888888877664 3344
Q ss_pred eeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHHHH
Q 012095 383 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERIKK 460 (471)
Q Consensus 383 ~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~i~~~~~~l~~ 460 (471)
...+.| .|++++++.... .+..++.+.|+++ ||.+.|+. ++++|+++. .+++++++++++|++
T Consensus 349 ~~~~~g-~~~~v~~~~~~~---------~~~~~l~~~l~~~-Gi~v~~~~----~~~iRl~~~~~~t~eei~~~~~~l~~ 413 (420)
T 2pb2_A 349 DIRGMG-LLIGAELKPKYK---------GRARDFLYAGAEA-GVMVLNAG----ADVMRFAPSLVVEEADIHEGMQRFAQ 413 (420)
T ss_dssp EEEEET-TEEEEEECGGGT---------TCHHHHHHHHHHT-TEECEESS----TTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEecc-eEEEEEECCCch---------HHHHHHHHHHHHC-CCEEEeCC----CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444554 457788864210 1467899998875 99999974 579999965 499999999999999
Q ss_pred HHHhh
Q 012095 461 GLLTL 465 (471)
Q Consensus 461 ~l~~~ 465 (471)
+++++
T Consensus 414 ~l~~~ 418 (420)
T 2pb2_A 414 AVGKV 418 (420)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-33 Score=278.14 Aligned_cols=330 Identities=12% Similarity=0.045 Sum_probs=244.2
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhc
Q 012095 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC 176 (471)
Q Consensus 97 ~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~ 176 (471)
.++|+.| +.++|+.+.+++.+.+. .+|++ +..++.+.+.+++++.+|.+.+.+.+++|+|+++++..++++++
T Consensus 20 ~~~~~pg--p~~~~~~v~~a~~~~~~---~~~~~--~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~ 92 (376)
T 3f0h_A 20 MLNFTVG--PVMSSEEVRAIGAEQVP---YFRTT--EFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF 92 (376)
T ss_dssp CEECSSS--SCCCCHHHHHHHTSCCC---CCSSH--HHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC
T ss_pred ceeecCC--CCCCcHHHHHHhcCCCC---CCCCH--HHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc
Confidence 3444444 34567888887765431 22322 44577888888888888865333455669999999999999999
Q ss_pred CCCCeEEEcCCCCCChH--HHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHH
Q 012095 177 SPGDEVIIPAPFWVSYP--EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 254 (471)
Q Consensus 177 ~~gd~Vlv~~p~y~~~~--~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~ 254 (471)
++||+|++++|.|.++. ..+...|++++.++.+ .++.+|++++++++++++++|++++|+||||.+++ +++|.
T Consensus 93 ~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~ 167 (376)
T 3f0h_A 93 TKKDKVLVIDGGSFGHRFVQLCEIHEIPYVALKLE--HGKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYD---TMMIG 167 (376)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHTTCCEEEEECC--TTCCCCHHHHHTTTTSCCCEEEEESEETTTTEECC---HHHHH
T ss_pred CCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCC--CCCCCCHHHHHHhhccCceEEEEecccCCcceecC---HHHHH
Confidence 99999999998666544 3577789999999986 35679999999999889999999999999999999 99999
Q ss_pred HHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccC-ccchhheeeEcCHHHHHHHHHHHh----
Q 012095 255 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACNKIQS---- 329 (471)
Q Consensus 255 ~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~R~G~v~~~~~~i~~l~~~~~---- 329 (471)
++|++| |++||+|++|..+... ..+.. .+..+++.|+||.++ ++| +|++++++++++.+.....
T Consensus 168 ~l~~~~-~~~li~D~~~~~~~~~----~~~~~----~~~d~~~~s~~K~l~~~~G--~g~~~~~~~~~~~~~~~~~~~~~ 236 (376)
T 3f0h_A 168 EFCKKN-NMFFVCDCVSAFLADP----FNMNE----CGADVMITGSQKVLACPPG--ISVIVLAPRGVERVEKSKVRTMY 236 (376)
T ss_dssp HHHHHT-TCEEEEECTTTTTTSC----CCHHH----HTCSEEEEETTTTTCCCSS--CEEEEECHHHHHHHHTCCCCCST
T ss_pred HHHHHc-CCEEEEEcCccccCcc----ccccc----cCccEEEecCcccccCCCc--eEEEEECHHHHHHhhcCCCCcee
Confidence 999999 9999999999864221 11111 234588999999997 555 7889999999888764211
Q ss_pred -------------cccCCCChHHHHHHHHHHhccCCChH--HHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeE
Q 012095 330 -------------QFTSGASSISQKAGVAALGLGYAGGE--VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFI 394 (471)
Q Consensus 330 -------------~~~~~~~~~~q~aa~~~L~~~~~~~~--~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~ 394 (471)
....+++...+.++.++++. ..+ .+++++++++++++++.+.|+++ |+++..+.....++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~ 312 (376)
T 3f0h_A 237 FDLKDALKNQERGQTPFTPAVGILLQINERLKE---IKKHGGADAEVARIASQAADFRAKIKDL-PFELVSESPANGVTS 312 (376)
T ss_dssp TCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH---HHHTTHHHHHHHHHHHHHHHHHHHTTTS-SEEECCSSBBTTEEE
T ss_pred ecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCccCccccCceEEE
Confidence 11234455444555555553 122 47888999999999999999988 777665443322222
Q ss_pred ecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012095 395 DFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~ 464 (471)
..+.. .+..++.+.|++++||.+.+|.....++++|+++.. +++++++++++|++++++
T Consensus 313 ~~~~~-----------~~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 313 VHPTT-----------ANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp EEESS-----------SCHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred EeCCC-----------CCHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 22221 267899999988779999998544456899999974 899999999999999875
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=290.23 Aligned_cols=333 Identities=15% Similarity=0.106 Sum_probs=231.3
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHcCC----CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGF----TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 94 g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~----~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
..+.|.|..+.+. ++|+.+.+++.+.+.+.. ..|....+..++.+.+.+.+++.+|. ++++|++|+|+++++.
T Consensus 18 ~~~~iyld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~v~~~~g~t~al~ 94 (400)
T 3vax_A 18 GSHMTYLDAAATT-RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSA--EPDELIFTSGATESNN 94 (400)
T ss_dssp ----CCCCCCCCS-SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTC--CGGGEEEESCHHHHHH
T ss_pred cCCcEEecCCCCC-CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCC--CCCcEEEeCCHHHHHH
Confidence 3457778777765 567888899888875421 11212223345566666666666774 5789999999999999
Q ss_pred HHHHHhc----CCCC-eEEEcCCCCCChHHHHHH---cCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCc
Q 012095 170 QAVLAVC----SPGD-EVIIPAPFWVSYPEMARI---ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT 241 (471)
Q Consensus 170 ~~~~~l~----~~gd-~Vlv~~p~y~~~~~~~~~---~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPt 241 (471)
.++++++ ++|| +|++++++|+++...+.. .|++++.++++. ++.+|+++|++++++++++|++++|+|||
T Consensus 95 ~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~npt 172 (400)
T 3vax_A 95 IALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGP--SGRISVEGVMERLRPDTLLVSLMHVNNET 172 (400)
T ss_dssp HHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCT--TCCCCHHHHHTTCCTTEEEEECCSBCTTT
T ss_pred HHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCC--CCCcCHHHHHHhcCCCceEEEEECCCCCc
Confidence 9999998 8999 999999999988766554 599999999864 56789999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeE-cCHH-
Q 012095 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA-GPKH- 319 (471)
Q Consensus 242 G~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~-~~~~- 319 (471)
|.+++ +++|.++|++| |++||+||+|.... ....+.. . ..+++.|+||.+|.+| +|+++ ++++
T Consensus 173 G~~~~---l~~i~~la~~~-~~~li~D~a~~~~~----~~~~~~~----~-~d~~~~s~~K~~g~~g--~g~~~~~~~~~ 237 (400)
T 3vax_A 173 GVIQP---VAELAQQLRAT-PTYLHVDAAQGYGK----VPGDLTT----P-IDMISISGHKIGAPKG--VGALVTRRREE 237 (400)
T ss_dssp CBBCC---HHHHHHHHTTS-SCEEEEECTTTTTT----SGGGGGS----C-CSEEEEETGGGTSCSS--CEEEEECBCSS
T ss_pred eeeCc---HHHHHHHHHhc-CCEEEEEhhhhcCC----CCcChhh----c-CcEEEEeHHHhCCCCc--eEEEEEecchh
Confidence 99999 88999999999 99999999998522 1112211 1 4489999999877555 67777 6651
Q ss_pred HH---HHHHHH-------HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCc-
Q 012095 320 FV---AACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG- 388 (471)
Q Consensus 320 ~i---~~l~~~-------~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~- 388 (471)
+. ..+... ......+++...+.++.++++. ..+++++.+++++++++++.+.|+ .+|+.+..+.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~ 313 (400)
T 3vax_A 238 MDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKI---FEAEHAQWQVAAQDLRSRLLAGLA-STSFQVNGDQDH 313 (400)
T ss_dssp STTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH---HHHSHHHHHHHHHHHHHHHHHHHT-TTTCEECSCTTS
T ss_pred ccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHhhC-CCCEEEeCCccc
Confidence 11 111111 1122344677777777777764 345688999999999999999999 88998877665
Q ss_pred --ceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------------------CCcEEEEe-ec
Q 012095 389 --AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------------------DTCIRISY-AA 446 (471)
Q Consensus 389 --g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~-------------------~~~iRis~-~~ 446 (471)
+.++++.++.. +..++.+.|. + ||.+.+|..|.. ++++||++ +.
T Consensus 314 ~~~~~~~~~~~~~------------~~~~l~~~L~-~-gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~ 379 (400)
T 3vax_A 314 VVPHILNLSFEDV------------DAEAFLVTLK-D-LVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPG 379 (400)
T ss_dssp BCTTEEEEECTTC------------CHHHHHHHHH-H-HHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC
T ss_pred CCCCEEEEEeCCC------------CHHHHHHHHh-c-CcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCC
Confidence 34566677642 6788999887 4 999999865532 38999999 64
Q ss_pred --CHHHHHHHHHHHHHHHHh
Q 012095 447 --SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 447 --~~e~i~~~~~~l~~~l~~ 464 (471)
+++++++++++|++++++
T Consensus 380 ~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 380 QATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp --------------------
T ss_pred CCCHHHHHHHHHHHHHHhcc
Confidence 789999999999988754
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-33 Score=274.47 Aligned_cols=327 Identities=13% Similarity=0.088 Sum_probs=250.7
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCC-CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh
Q 012095 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYT-PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 175 (471)
Q Consensus 97 ~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~-~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l 175 (471)
.+.+.-| +.++|+.+.+++.+++.++...|+ ...+..++.+.+.+++.+.+|.+ ++++|++|+|+++++..+++++
T Consensus 5 ~~~~~p~--p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~v~~~~g~t~al~~~~~~l 81 (362)
T 3ffr_A 5 KIYFTPG--PSELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELP-SNYEVLFLASATEIWERIIQNC 81 (362)
T ss_dssp CEEECSS--SCCCCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCC-TTEEEEEESCHHHHHHHHHHHH
T ss_pred ceeccCC--CcCCCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCC-CCcEEEEeCCchHHHHHHHHhc
Confidence 4555544 334567888888887776553332 22344567788888888888864 5689999999999999999999
Q ss_pred cCCCCeEEEcCCCCCC-hHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHH
Q 012095 176 CSPGDEVIIPAPFWVS-YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 254 (471)
Q Consensus 176 ~~~gd~Vlv~~p~y~~-~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~ 254 (471)
+++ +.+++..+.|.. +...++..|++++.++.+ .++.+|+++++ +++++++|++++|+||||.+++ +++|.
T Consensus 82 ~~~-~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~--~~~~~~~v~~~~~~nptG~~~~---l~~i~ 153 (362)
T 3ffr_A 82 VEK-KSFHCVNGSFSKRFYEFAGELGREAYKEEAA--FGKGFYPADIT--VPADAEIICLTHNETSSGVSMP---VEDIN 153 (362)
T ss_dssp CSS-EEEEEECSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCGGGCC--CCTTCCEEEEESEETTTTEECC---HHHHT
T ss_pred cCC-cEEEEcCcHHHHHHHHHHHHhCCCeEEEecC--CCCCCCHHHHh--ccCCccEEEEEcCCCCcceeCC---HHHHH
Confidence 988 666666667662 334677889999999985 35679999999 7789999999999999999999 88899
Q ss_pred HHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccC-ccchhheeeEcCHHHHHHHHHHHh----
Q 012095 255 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACNKIQS---- 329 (471)
Q Consensus 255 ~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~R~G~v~~~~~~i~~l~~~~~---- 329 (471)
++|++|||++||+|++|..+... .. +. +..+++.|+||.++ ++| +|++++++++++.+.....
T Consensus 154 ~la~~~p~~~li~D~a~~~~~~~----~~---~~---~~d~~~~s~~K~~~~~~G--~g~~~~~~~~~~~~~~~~~gg~~ 221 (362)
T 3ffr_A 154 TFRDKNKDALIFVDAVSSLPYPK----FD---WT---KIDSVFFSVQKCFGLPAG--LGVWILNDRVIEKSKALLAKRKS 221 (362)
T ss_dssp TSGGGSTTSEEEEECTTTTTSSC----CC---TT---SCSEEEEETTSTTCCCSC--CEEEEEEHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCCCEEEEecccccCCcc----cC---hh---HCcEEEEecccccCCCCc--eEEEEECHHHHHHhhhccccCCC
Confidence 99999867999999999753211 11 11 14488999999998 777 6889999999988876543
Q ss_pred -----------------cccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC----Cc
Q 012095 330 -----------------QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP----QG 388 (471)
Q Consensus 330 -----------------~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p----~~ 388 (471)
....+++...+.++.++++.. ....+++.+++++++++++.+.|+++||+++..+ .+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~ 299 (362)
T 3ffr_A 222 IGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDM--LQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRS 299 (362)
T ss_dssp CCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBC
T ss_pred CcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHH--HHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcC
Confidence 113456777777777777631 0223688889999999999999999989888753 23
Q ss_pred ceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012095 389 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGL 462 (471)
Q Consensus 389 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l 462 (471)
++++|+.+++ +..++.+.|.++ ||.+.+|..+..++++|++++. +++++++++++|++++
T Consensus 300 ~~~~~~~~~~-------------~~~~~~~~l~~~-gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 300 MTTIVANTTM-------------LPGEINKILEPF-DMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp SSEEEEEESS-------------CHHHHHHHHGGG-TEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CceEEEecCC-------------CHHHHHHHHHHC-CeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 5667888763 477899998877 9999999766667899999986 8899999999998764
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=286.62 Aligned_cols=353 Identities=15% Similarity=0.081 Sum_probs=242.9
Q ss_pred cCCCeEEcCCCCC--CCC-ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcEEEeCChHHHH
Q 012095 93 AGVSVIRLAAGEP--DFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSI 168 (471)
Q Consensus 93 ~g~~~i~l~~g~~--~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~-~~i~it~G~~~al 168 (471)
.|++++|++.|.+ +++ .++.+.+++.+++.+. ..|+...|..++++++++++.+.++. .. +++++|+|+++++
T Consensus 41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~~v~~~~ggsea~ 117 (439)
T 3dxv_A 41 NGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANP-AGATILSASNAPAVTLAERLLASFPG--EGTHKIWFGHSGSDAN 117 (439)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSC-SCSCSSSSEEHHHHHHHHHHHHTTTC--TTTEEEEEESSHHHHH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhc-cCccccccCCHHHHHHHHHHHHhCCC--CCCCEEEEeCCHHHHH
Confidence 5778999999987 444 5889999999998764 55766678889999999999888753 33 7999999999999
Q ss_pred HHHHHHh--cCCCCeEEEcCCCCCChHHHHHHcCCE-E--------------EEecCCCCCCCcC-----CHHHHHhhh-
Q 012095 169 LQAVLAV--CSPGDEVIIPAPFWVSYPEMARIADAT-P--------------VILPTRISENFLL-----DPKVLESKL- 225 (471)
Q Consensus 169 ~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~G~~-~--------------~~v~~~~~~~~~l-----d~e~l~~~l- 225 (471)
..+++++ ..+++.|++.+|+|+++...+...+.. . ..+|.+. .+.. |+++|++++
T Consensus 118 ~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~le~~l~ 195 (439)
T 3dxv_A 118 EAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRP--YRNDPTGDAILTLLTEKLA 195 (439)
T ss_dssp HHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSC--BTTBTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCc--ccccccHHHHHHHHHHHHH
Confidence 9999885 336678888899997766554443322 1 2333321 1111 689999998
Q ss_pred ---ccCCcEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCC
Q 012095 226 ---TEKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 301 (471)
Q Consensus 226 ---~~~~~~i~i~~p~NPtG~~~-~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 301 (471)
.+++++|++++++|++|.+. +++++++|.++|++| +++||+||+|.++...+.. ... ...+.... +.|||
T Consensus 196 ~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~DE~~~g~g~~g~~-~~~-~~~~~~~d---i~s~s 269 (439)
T 3dxv_A 196 AVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAH-GILVVCDEVKVGLARSGRL-HCF-EHEGFVPD---ILVLG 269 (439)
T ss_dssp TSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTCTTTTSSS-SGG-GGTTCCCS---EEEEC
T ss_pred hcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCchh-hHH-HhcCCCCC---EEEEc
Confidence 45667777777788888765 555699999999999 9999999999976544421 111 11111122 23899
Q ss_pred cccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 012095 302 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 381 (471)
Q Consensus 302 K~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~ 381 (471)
|.++ +|+|+||+++++++++.+.......++ .+++++.++.++|+.... +++++..++..+..++.+.+.+.+++.+
T Consensus 270 K~~~-~G~riG~~~~~~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 346 (439)
T 3dxv_A 270 KGLG-GGLPLSAVIAPAEILDCASAFAMQTLH-GNPISAAAGLAVLETIDR-DDLPAMAERKGRLLRDGLSELAKRHPLI 346 (439)
T ss_dssp GGGG-TTSCCEEEEEEHHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred chhc-CCcceEEEEECHHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 9999 799999999999999887765445566 899999999998874111 2223333333333344444333334555
Q ss_pred eeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHH
Q 012095 382 KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIK 459 (471)
Q Consensus 382 ~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~ 459 (471)
...++.|. |+|+.+......... ...+..++++.|+++ ||.+.||..+ .+++||+++. +++++++++++|+
T Consensus 347 ~~~~~~g~-~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~-Gv~v~~~~~~--~~~iRi~~~~~~t~e~i~~~l~~l~ 419 (439)
T 3dxv_A 347 GDIRGRGL-ACGMELVCDRQSREP---ARAETAKLIYRAYQL-GLVVYYVGMN--GNVLEFTPPLTITETDIHKALDLLD 419 (439)
T ss_dssp EEEEEETT-EEEEEEEEETTTTEE---CHHHHHHHHHHHHHH-TEECEEESTT--SCEEEECCCTTCCHHHHHHHHHHHH
T ss_pred EEEEEEEE-EEEEEEecCccccCC---CHHHHHHHHHHHHHC-CcEEeecCCC--CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 55555555 466666211000000 001356788888877 9999998643 4799998654 8999999999999
Q ss_pred HHHHhhC
Q 012095 460 KGLLTLR 466 (471)
Q Consensus 460 ~~l~~~~ 466 (471)
++++++.
T Consensus 420 ~~l~~~~ 426 (439)
T 3dxv_A 420 RAFSELS 426 (439)
T ss_dssp HHHHTGG
T ss_pred HHHHHHh
Confidence 9998764
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=288.37 Aligned_cols=357 Identities=16% Similarity=0.122 Sum_probs=251.8
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.+||+..|. ..++. |+.+++++.+++.+. .+|+...+..+++.++++++.+.++.. ..++|++|+|+++++.
T Consensus 62 ~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~~v~~~~sGseA~~ 139 (453)
T 4ffc_A 62 DGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHF-THTCFMVTPYEQYVQVAELLNALTPGD-HDKRTALFNSGAEAVE 139 (453)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHC-SCCTTTTSCCHHHHHHHHHHHHHSSCS-SCEEEEEESSHHHHHH
T ss_pred CCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhc-cccccCcCCCHHHHHHHHHHHHhCCCC-CCcEEEEeCcHHHHHH
Confidence 577899999884 55654 889999999998764 456656677888899999998877632 2579999999999999
Q ss_pred HHHHHhcC--CCCeEEEcCCCCCChHHHHHHcCC--------------EEEEecCCC--CCCCcCC--------HHHHHh
Q 012095 170 QAVLAVCS--PGDEVIIPAPFWVSYPEMARIADA--------------TPVILPTRI--SENFLLD--------PKVLES 223 (471)
Q Consensus 170 ~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~G~--------------~~~~v~~~~--~~~~~ld--------~e~l~~ 223 (471)
.+++.+.. .++.|++.+++|+++...+...+. .+..+|... .+.++.+ ++.|++
T Consensus 140 ~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~ 219 (453)
T 4ffc_A 140 NAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIET 219 (453)
T ss_dssp HHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHH
Confidence 99977653 458999999999988766655432 344555431 1112233 466777
Q ss_pred hhccCCcEEEEcCCCCCcc--cCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCC
Q 012095 224 KLTEKSRLLILCSPSNPTG--SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 301 (471)
Q Consensus 224 ~l~~~~~~i~i~~p~NPtG--~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 301 (471)
.+.++..++++++|.|++| .+.+++++++|.++|++| |++||+||+|.++.+.+.. ..+... +....+.|||
T Consensus 220 ~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~g~g~~g~~-~a~~~~----~~~pdi~t~s 293 (453)
T 4ffc_A 220 QIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASEN-GVVFIADEVQTGFARTGAW-FASEHE----GIVPDIVTMA 293 (453)
T ss_dssp HTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-STHHHH----TCCCSEEEEC
T ss_pred hcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHc-CCEEEEecCccCCCccccc-chhhhc----CCCcchHhhh
Confidence 6666667788888888776 566888999999999999 9999999999987554421 111111 1122255799
Q ss_pred cccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 012095 302 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 381 (471)
Q Consensus 302 K~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~ 381 (471)
|.++. |+|+||+++++++++.+.......+++.++++|.++.++|+.... ++++++.++..+..++.+.+.+.+++++
T Consensus 294 K~~~~-G~~~G~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 371 (453)
T 4ffc_A 294 KGIAG-GMPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRE-LDLPARARAIEASVTSRLSALAEEVDII 371 (453)
T ss_dssp GGGGT-TSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCSSE
T ss_pred hhhcC-CcCeEEEEECHHHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence 99984 999999999999999887666667788999999999999874211 2334444444444555555555555555
Q ss_pred eeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHH
Q 012095 382 KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIK 459 (471)
Q Consensus 382 ~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~ 459 (471)
....+.|. |+|+.+... ..... ......++++.|+++ ||.+.|+..|+ +++|+++.. +++++++++++|+
T Consensus 372 ~~~~~~g~-~~~~~~~~~-~~~~~---~~~~~~~~~~~l~~~-Gv~v~~~~~~~--~~iRi~~~~~~t~e~i~~~l~~l~ 443 (453)
T 4ffc_A 372 GEVRGRGA-MLAIEIVKP-GTLEP---DAALTKSIAAEALSQ-GVLILTCGTFG--NVIRLLPPLVIGDDLLDEGITALS 443 (453)
T ss_dssp EEEEEETT-EEEEEEBCT-TSCCB---CHHHHHHHHHHHHHT-TEECCEECTTS--CEEEECCCTTCCHHHHHHHHHHHH
T ss_pred EEEEeece-EEEEEEecC-cccCC---CHHHHHHHHHHHHhC-CCEEecCCCCC--CEEEEECCCCCCHHHHHHHHHHHH
Confidence 55544444 577776421 00000 001356788888876 99999987653 689998664 8999999999999
Q ss_pred HHHHhhCC
Q 012095 460 KGLLTLRP 467 (471)
Q Consensus 460 ~~l~~~~~ 467 (471)
++++++..
T Consensus 444 ~~l~~~~~ 451 (453)
T 4ffc_A 444 DIIRAKAS 451 (453)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHh
Confidence 99987653
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=279.39 Aligned_cols=340 Identities=12% Similarity=0.078 Sum_probs=240.1
Q ss_pred cCCCeEEcCCCCC--CCC-ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGEP--DFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~~--~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.++|++.|.+ +++ .++.+++++.+++.+... |....+..+.+..+++.+.+.++ ..+++|++|+|+++++.
T Consensus 41 ~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~ggtea~~ 117 (429)
T 1s0a_A 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSH-VMFGGITHAPAIELCRKLVAMTP--QPLECVFLADSGSVAVE 117 (429)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSC-CCCSSEECHHHHHHHHHHHHHSC--TTCCEEEEESSHHHHHH
T ss_pred CCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccc-ccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCHHHHHH
Confidence 4667899999884 454 478999999998876432 21111223455666666666666 36789999999999999
Q ss_pred HHHHHhc---C----CCCeEEEcCCCCCChHHHHHH-cC-------------CEEEEecCCC---CCCC-cCCHHHHHhh
Q 012095 170 QAVLAVC---S----PGDEVIIPAPFWVSYPEMARI-AD-------------ATPVILPTRI---SENF-LLDPKVLESK 224 (471)
Q Consensus 170 ~~~~~l~---~----~gd~Vlv~~p~y~~~~~~~~~-~G-------------~~~~~v~~~~---~~~~-~ld~e~l~~~ 224 (471)
.+++++. + |||.|++.+|+|+++...+.. .| ..+..++.+. ++.| .+|+++|+++
T Consensus 118 ~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 197 (429)
T 1s0a_A 118 VAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARL 197 (429)
T ss_dssp HHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHH
T ss_pred HHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHH
Confidence 9988653 2 699999999999987553322 11 1234444431 1234 4799999999
Q ss_pred hcc---CCcEEEEcCC--CCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEe
Q 012095 225 LTE---KSRLLILCSP--SNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVN 298 (471)
Q Consensus 225 l~~---~~~~i~i~~p--~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~ 298 (471)
+++ ++++ ++++| +||||. ..+++++++|.++|++| ++++|+||+|.++.+.+.. ..+.... ...+ +.
T Consensus 198 l~~~~~~~~~-vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~-~~~li~De~~~~~g~~g~~-~~~~~~~-~~~d---~~ 270 (429)
T 1s0a_A 198 MAAHRHEIAA-VIIEPIVQGAGGMRMYHPEWLKRIRKICDRE-GILLIADEIATGFGRTGKL-FACEHAE-IAPD---IL 270 (429)
T ss_dssp HHHHTTTEEE-EEECSSEECTTTCEEBCTHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGGGGT-CCCS---EE
T ss_pred HHhCCCCEEE-EEEeecccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEeehhhCCcccchH-HHhhhcC-CCCC---EE
Confidence 873 4444 45555 689995 66789999999999999 9999999999876543321 1111111 1122 33
Q ss_pred cCCcccCccc-hhheeeEcCHHHHHHHHHHH-----hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHH
Q 012095 299 GFSKAFAMTG-WRLGYIAGPKHFVAACNKIQ-----SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 372 (471)
Q Consensus 299 S~SK~~g~~G-~R~G~v~~~~~~i~~l~~~~-----~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~ 372 (471)
||||.++ +| +|+||+++++++++.+.... ...+++.+++++.++.++|+.. .+ ++..++++++++++.
T Consensus 271 t~sK~l~-~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~---~~--~~~~~~~~~~~~~l~ 344 (429)
T 1s0a_A 271 CLGKALT-GGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAIL---ES--GDWQQQVADIEVQLR 344 (429)
T ss_dssp EECGGGG-TSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHH---HT--CHHHHHHHHHHHHHH
T ss_pred Eeccccc-CCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHH
Confidence 7999998 78 99999999999988876521 2245667999999999988741 11 245567777888888
Q ss_pred HHhcCC---CCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cC
Q 012095 373 KSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--AS 447 (471)
Q Consensus 373 ~~L~~~---~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~--~~ 447 (471)
+.|+++ +++....+.|. |+|++++... +..++.+.|+++ ||.+.|+ .+++||+++ .+
T Consensus 345 ~~L~~l~~~~~~~~~~~~g~-~~~~~~~~~~-----------~~~~l~~~l~~~-Gi~v~~~-----~~~iRis~~~~~t 406 (429)
T 1s0a_A 345 EQLAPARDAEMVADVRVLGA-IGVVETTHPV-----------NMAALQKFFVEQ-GVWIRPF-----GKLIYLMPPYIIL 406 (429)
T ss_dssp HHHGGGGGCTTEEEEEEETT-EEEEEESSCB-----------CHHHHHHHHHHT-TEECCCB-----TTEEEECCCTTCC
T ss_pred HHHHHHhcCCCEEEEEEeeE-EEEEEECCcc-----------cHHHHHHHHHHC-CCEEecc-----CCEEEEECCCCCC
Confidence 888775 56654555554 6888887531 577899988865 9999884 268999965 49
Q ss_pred HHHHHHHHHHHHHHHHhhC
Q 012095 448 LTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 448 ~e~i~~~~~~l~~~l~~~~ 466 (471)
++++++++++|++++++++
T Consensus 407 ~e~i~~~~~~l~~~~~~~~ 425 (429)
T 1s0a_A 407 PQQLQRLTAAVNRAVQDET 425 (429)
T ss_dssp HHHHHHHHHHHHHHTSSGG
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 9999999999999876543
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=283.77 Aligned_cols=355 Identities=14% Similarity=0.048 Sum_probs=249.5
Q ss_pred cCCCeEEcCCC--CCCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAG--EPDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g--~~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.+||++.| ...++. ++.+++++.+++.+..+.|+...+..++++++++++.+.++ ...++|++|+|+++++.
T Consensus 48 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~ggseA~~ 125 (459)
T 4a6r_A 48 EGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTP--AGFDRVFYTNSGSESVD 125 (459)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSC--TTCCEEEEESSHHHHHH
T ss_pred CCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCchHHHHH
Confidence 57789999988 445554 78999999999887555666666778899999999988876 35679999999999999
Q ss_pred HHHHHhcC--------CCCeEEEcCCCCCChHHHHHHcCC-------------EEEEecCCC--C-CCCcCC--------
Q 012095 170 QAVLAVCS--------PGDEVIIPAPFWVSYPEMARIADA-------------TPVILPTRI--S-ENFLLD-------- 217 (471)
Q Consensus 170 ~~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~G~-------------~~~~v~~~~--~-~~~~ld-------- 217 (471)
.+++++++ ++|.|++.+|+|+++...+...+. .+..++... . +.+ +|
T Consensus 126 ~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~ 204 (459)
T 4a6r_A 126 TMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVA 204 (459)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHH
Confidence 99999875 469999999999998866655533 223333221 0 112 34
Q ss_pred HHHHHhhhcc---CCcEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCC
Q 012095 218 PKVLESKLTE---KSRLLILCSP-SNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292 (471)
Q Consensus 218 ~e~l~~~l~~---~~~~i~i~~p-~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 292 (471)
+++|++++.+ +..++++++| +|++|. +++++++++|.++|++| |++||+||+|.++...|... ....... ..
T Consensus 205 ~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~g~gr~G~~~-~~~~~~~-~p 281 (459)
T 4a6r_A 205 ARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKY-DVLLVADEVICGFGRTGEWF-GHQHFGF-QP 281 (459)
T ss_dssp HHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSS-HHHHHTC-CC
T ss_pred HHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcccccc-hHhhcCC-CC
Confidence 7888888862 3334444455 555665 56999999999999999 99999999999875554311 1111111 11
Q ss_pred ceEEEecCCcccCccchhheeeEcCHHHHHHHH---HHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHH-HHHHHHH
Q 012095 293 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN---KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV-KAFRERR 368 (471)
Q Consensus 293 ~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~---~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~-~~~~~~r 368 (471)
. +.+|||.++.+|+|+||+++++++++.+. ......+++.+++++.++.++|+.... ++++++.+ +..+..+
T Consensus 282 d---i~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~~~~ 357 (459)
T 4a6r_A 282 D---LFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRD-EGIVQRVKDDIGPYMQ 357 (459)
T ss_dssp S---EEEECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHH-TCHHHHHHHTHHHHHH
T ss_pred C---eeehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHH
Confidence 1 34689999744499999999999999987 333345667899999999999974211 34455555 5555666
Q ss_pred HHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCC-CCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--
Q 012095 369 DFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK-IENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA-- 445 (471)
Q Consensus 369 ~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~-- 445 (471)
+.+.+.|.+++++....+.|.| +++.+...... ...+.. .....++++.|+++ ||.+.|+. +++||++.
T Consensus 358 ~~l~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~g-----~~iRi~~~~~ 429 (459)
T 4a6r_A 358 KRWRETFSRFEHVDDVRGVGMV-QAFTLVKNKAK-RELFPDFGEIGTLCRDIFFRN-NLIMRACG-----DHIVSAPPLV 429 (459)
T ss_dssp HHHHHHHTTCTTEEEEEEETTE-EEEEECSBTTT-TBCCSSTTHHHHHHHHHHHHT-TEECEEET-----TEEEECCCTT
T ss_pred HHHHHHHhcCCCeEEEEEEEEE-EEEEEecCccc-cccccchHHHHHHHHHHHHHC-CeEEecCC-----CEEEEECCCC
Confidence 6665667767667666666665 55666432100 000000 00156788888876 99999963 79999954
Q ss_pred cCHHHHHHHHHHHHHHHHhh
Q 012095 446 ASLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 446 ~~~e~i~~~~~~l~~~l~~~ 465 (471)
.+++++++++++|+++++++
T Consensus 430 ~t~e~i~~~l~~l~~~l~~~ 449 (459)
T 4a6r_A 430 MTRAEVDEMLAVAERCLEEF 449 (459)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 49999999999999998765
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=288.80 Aligned_cols=325 Identities=14% Similarity=0.148 Sum_probs=240.8
Q ss_pred CeEEcCCC-CCCCCChHHHHHHHHHH----HHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHH
Q 012095 96 SVIRLAAG-EPDFDTPVLIAEAGINA----IREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQ 170 (471)
Q Consensus 96 ~~i~l~~g-~~~~~~p~~v~~a~~~~----~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~ 170 (471)
++|+|+.| ++++++|+.+.++.... ...+...|+ ..|.+ +++++++++.+.+|. +++++++|+++++..
T Consensus 90 ~~i~l~~g~~~~~~~~~~i~~a~~~~~~~~~~~~~~~Y~-~~g~~-~~~~l~~~la~~~g~----~~~i~~~sGt~al~~ 163 (464)
T 1ibj_A 90 LLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYT-RSGNP-TRDALESLLAKLDKA----DRAFCFTSGMAALSA 163 (464)
T ss_dssp HHTCCCCSSCTTCCSSCCCCCCSBCCCSSSSCCCSCSBT-TTCCH-HHHHHHHHHHHHHTC----SEEEEESSHHHHHHH
T ss_pred eEEECCCCCCCCCCCCccHHhhhhhhhhcccccCCcccc-CCCCH-HHHHHHHHHHHHhCC----CeEEEECCHHHHHHH
Confidence 47899997 88888887777666532 223446675 45666 899999999988884 377778888899988
Q ss_pred HHHHhcCCCCeEEEcCCCCCChHHH----HHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCC
Q 012095 171 AVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 246 (471)
Q Consensus 171 ~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~ 246 (471)
++. ++++||+|++++|+|.++... ++..|++++.++++ |++++++++++++++|++++|+||||.+++
T Consensus 164 ~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-------d~~~l~~~i~~~tk~v~l~~p~NptG~v~~ 235 (464)
T 1ibj_A 164 VTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT-------KLDEVAAAIGPQTKLVWLESPTNPRQQISD 235 (464)
T ss_dssp HHT-TSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT-------SHHHHHHHCCSSEEEEEECSSCTTTCCCCC
T ss_pred HHH-HhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCC-------CHHHHHHHhccCceEEEEeCCCCCCCEeec
Confidence 775 789999999999999998754 56789999999863 899999999989999999999999999998
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCc-cchhheeeEcC-HHHHHHH
Q 012095 247 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM-TGWRLGYIAGP-KHFVAAC 324 (471)
Q Consensus 247 ~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~-~G~R~G~v~~~-~~~i~~l 324 (471)
+++|+++|++| |++||+||+|.... ...++ . .++++++.|+||.++. .|+|+||++++ +++++.+
T Consensus 236 ---l~~i~~la~~~-gi~livDea~~~g~----~~~~~-~----~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l 302 (464)
T 1ibj_A 236 ---IRKISEMAHAQ-GALVLVDNSIMSPV----LSRPL-E----LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEV 302 (464)
T ss_dssp ---HHHHHHHHHTT-TCEEEEECTTTCTT----TCCGG-G----TTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHH
T ss_pred ---HHHHHHHHHHc-CCEEEEECCCcccc----cCChh-h----cCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHH
Confidence 99999999999 99999999997521 11111 1 3577999999999863 48999999998 4888888
Q ss_pred HHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHH----------HHHhcCCCCCeeeCCCc---ceE
Q 012095 325 NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL----------VKSFGELEGVKMSEPQG---AFY 391 (471)
Q Consensus 325 ~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l----------~~~L~~~~g~~~~~p~~---g~~ 391 (471)
.........+.+++.|.++..+|+. ....+++..+......+++ .+.|.++||+++..++. |.+
T Consensus 303 ~~~~~~~g~~~~~~~~~a~~~al~~---~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~ 379 (464)
T 1ibj_A 303 YFLQNSEGSGLAPFDCWLCLRGIKT---MALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSV 379 (464)
T ss_dssp HHHHHHTTCBCCHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSE
T ss_pred HHHHHhcCCCCCHHHHHHHHhchhh---HHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceE
Confidence 8776656667789999988888764 1222222222222222222 34555566777665542 334
Q ss_pred EeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC------------CC----------CC-CCcEEEEeecCH
Q 012095 392 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD------------AF----------GD-DTCIRISYAASL 448 (471)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~------------~f----------~~-~~~iRis~~~~~ 448 (471)
+++.+++. .....+.+.|. ..||.+.+|. .+ +. ++++|+|++.
T Consensus 380 ~~~~l~~~-----------~~~~~~~~~L~-~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~-- 445 (464)
T 1ibj_A 380 FSFITGSV-----------ALSKHLVETTK-YFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI-- 445 (464)
T ss_dssp EEEECSCH-----------HHHHHHHHHCS-SSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS--
T ss_pred EEEEECCH-----------HHHHHHHHhcC-cceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC--
Confidence 67777421 02345777654 3589888885 11 22 5799999998
Q ss_pred HHHHHHHHHHHHHHHh
Q 012095 449 TTLQAAVERIKKGLLT 464 (471)
Q Consensus 449 e~i~~~~~~l~~~l~~ 464 (471)
|++++++++|++++++
T Consensus 446 edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 446 EDVDDLISDLDIAFKT 461 (464)
T ss_dssp SCHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhh
Confidence 8999999999999875
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-34 Score=283.17 Aligned_cols=325 Identities=12% Similarity=0.084 Sum_probs=241.1
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcC----CCCCCC---CCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCCh-HHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREG----FTRYTP---NAGTLELRSAICHKLKEENGLSYTPDQILVSNGA-KQS 167 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~----~~~Y~~---~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~-~~a 167 (471)
.+++++.|.+ ++|+.+++++.+.+.+. ...|+. ..+..++.+.+.+.+++.+|.+ ++++|++|+|+ +++
T Consensus 3 ~~~~~~~g~~--~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~~v~~~~g~gt~a 79 (360)
T 1w23_A 3 QVFNFNAGPS--ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIP-NDYQILFLQGGASLQ 79 (360)
T ss_dssp CCEECCSSSC--CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHH
T ss_pred ceEeecCCCc--CCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCC-CCceEEEECCcchHH
Confidence 4678888865 66888999998876431 112222 3344556777777777778864 46799999999 999
Q ss_pred HHHHHHHhcCC---CCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHh-hhccCCcEEEEcCCCCCccc
Q 012095 168 ILQAVLAVCSP---GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLES-KLTEKSRLLILCSPSNPTGS 243 (471)
Q Consensus 168 l~~~~~~l~~~---gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~-~l~~~~~~i~i~~p~NPtG~ 243 (471)
+..++..++.+ ||.|+++.++|.. ...++..| +++.+++++++++ +|++++++ ++++++|+|++++|+||||.
T Consensus 80 l~~~~~~l~~~~~~g~~vi~~~~~~~~-~~~~~~~g-~~~~v~~~~~~~~-~d~~~l~~~~i~~~~k~v~~~~~~nptG~ 156 (360)
T 1w23_A 80 FTMLPMNLLTKGTIGNYVLTGSWSEKA-LKEAKLLG-ETHIAASTKANSY-QSIPDFSEFQLNENDAYLHITSNNTIYGT 156 (360)
T ss_dssp HHHHHHHHCCTTCEEEEEECSHHHHHH-HHHHHTTS-EEEEEEECGGGTS-CSCCCGGGCCCCTTEEEEEEESEETTTTE
T ss_pred HHHHHHHhcCCCCcccEEEecchhHHH-HHHHHHhC-CeEEeecccccCc-CCccchHhhccCCCCCEEEEeCCCCCcce
Confidence 99999999865 5677777777654 33467789 9999998753433 79999999 88888999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHH
Q 012095 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 323 (471)
Q Consensus 244 ~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~ 323 (471)
+++ ++. ++| |++||+||+|..+.. ...+..+ .+++.|+||.+|++| +||+++++++++.
T Consensus 157 ~~~--~i~------~~~-~~~li~D~a~~~~~~----~~~~~~~------di~~~s~sK~~~~~G--~G~~~~~~~~~~~ 215 (360)
T 1w23_A 157 QYQ--NFP------EIN-HAPLIADMSSDILSR----PLKVNQF------GMIYAGAQKNLGPSG--VTVVIVKKDLLNT 215 (360)
T ss_dssp ECS--SCC------CCC-SSCEEEECTTTTTSS----CCCGGGC------SEEEEETTTTTSCTT--CEEEEEEHHHHCS
T ss_pred ecc--ccc------ccC-CceEEEechhhcCCC----CcCcccC------CEEEEEcccccCCCC--cEEEEEcHHHHhh
Confidence 987 232 378 999999999986431 1122211 388999999999666 9999999988776
Q ss_pred HHHHH------------hcccCCCChHHHHHHHHHHhccCCChH--HHHHHHHHHHHHHHHHHHHhcCCCCC-eee-CC-
Q 012095 324 CNKIQ------------SQFTSGASSISQKAGVAALGLGYAGGE--VVSKMVKAFRERRDFLVKSFGELEGV-KMS-EP- 386 (471)
Q Consensus 324 l~~~~------------~~~~~~~~~~~q~aa~~~L~~~~~~~~--~~~~~~~~~~~~r~~l~~~L~~~~g~-~~~-~p- 386 (471)
+.... .....+++...+.++.++++. ..+ ++++++++++++++++.+.|++++++ ... .|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 292 (360)
T 1w23_A 216 KVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDW---IKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKG 292 (360)
T ss_dssp CCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHH---HHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGG
T ss_pred cccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCch
Confidence 54321 111234567777777777764 122 68889999999999999999998655 543 23
Q ss_pred -CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 012095 387 -QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLL 463 (471)
Q Consensus 387 -~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~ 463 (471)
.+++++|+++++. .+..++.++|.+ .||.+.||..+ ++++|++++. +++++++++++|+++++
T Consensus 293 ~~~~~~~~~~~~~~-----------~~~~~~~~~l~~-~gi~~~~~~~~--~~~iRis~~~~~~~~~i~~~~~~l~~~~~ 358 (360)
T 1w23_A 293 SRSLMNVTFNLRNE-----------ELNQQFLAKAKE-QGFVGLNGHRS--VGGCRASIYNAVPIDACIALRELMIQFKE 358 (360)
T ss_dssp GBCSSEEEEECSSH-----------HHHHHHHHHHHH-TTEESCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred hccCcEEEEEcCCC-----------ccHHHHHHHHHH-CCeeeecCCCC--CCeEEEEecCCCCHHHHHHHHHHHHHHHh
Confidence 3566889988742 145678888765 59999998764 6899999995 88999999999999876
Q ss_pred h
Q 012095 464 T 464 (471)
Q Consensus 464 ~ 464 (471)
+
T Consensus 359 ~ 359 (360)
T 1w23_A 359 N 359 (360)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=278.55 Aligned_cols=326 Identities=15% Similarity=0.192 Sum_probs=249.7
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHH
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~ 174 (471)
.++|+|+.|.++++ +.+.+++.+++..+ .|++..+..++++.+++++ |. +++++++|+++++..++++
T Consensus 30 ~~~id~~~~~~~~~--~~v~~a~~~~~~~~--~y~~~~~~~~l~~~la~~~----~~----~~~v~~~~Gt~a~~~~l~~ 97 (399)
T 2oga_A 30 VPFLDLKAAYEELR--AETDAAIARVLDSG--RYLLGPELEGFEAEFAAYC----ET----DHAVGVNSGMDALQLALRG 97 (399)
T ss_dssp BCSCCHHHHHHHTH--HHHHHHHHHHHHHT--CCSSSHHHHHHHHHHHHHT----TS----SEEEEESCHHHHHHHHHHH
T ss_pred CcccccCcCCCCCC--HHHHHHHHHHHhcC--CCCCchhHHHHHHHHHHHH----CC----CeEEEecCHHHHHHHHHHH
Confidence 46889999988763 78899998888653 5766778889999999886 32 3677888889999999999
Q ss_pred h-cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHH
Q 012095 175 V-CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 253 (471)
Q Consensus 175 l-~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i 253 (471)
+ +++||+|++++|+|+++...++..|++++.+++++ +++.+|++++++++++++++|+ |+||||.+.+ +++|
T Consensus 98 ~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~---l~~i 170 (399)
T 2oga_A 98 LGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHE-DHPTLDPLLVEKAITPRTRALL---PVHLYGHPAD---MDAL 170 (399)
T ss_dssp TTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCS-SSSSBCHHHHHHHCCTTEEEEC---CBCGGGCCCC---HHHH
T ss_pred hCCCCcCEEEECCCccHHHHHHHHHCCCEEEEEecCC-CCCCcCHHHHHHhcCCCCeEEE---EeCCcCCccC---HHHH
Confidence 9 89999999999999999999999999999999874 3577999999999988888776 5789999998 8999
Q ss_pred HHHHHhCCCeEEEEccCCCccc-cCCCCccccccCCCCCCceEEEecC--CcccCccchhheeeEcC-HHHHHHHHHHHh
Q 012095 254 ARIVAKHPRLLVLSDEIYEHII-YAPATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAGP-KHFVAACNKIQS 329 (471)
Q Consensus 254 ~~l~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~g~~G~R~G~v~~~-~~~i~~l~~~~~ 329 (471)
.++|+++ +++||+||+|..+. +++. .+..+ ..+++.|| ||.+|.+| |+||++++ +++++.+.....
T Consensus 171 ~~l~~~~-~~~li~Dea~~~g~~~~~~---~~~~~-----~di~~~S~~~sK~~~~~G-~~g~~~~~~~~~~~~l~~~~~ 240 (399)
T 2oga_A 171 RELADRH-GLHIVEDAAQAHGARYRGR---RIGAG-----SSVAAFSFYPGKNLGCFG-DGGAVVTGDPELAERLRMLRN 240 (399)
T ss_dssp HHHHHHH-TCEECEECTTCTTCEETTE---ETTCT-----TCEEEEECCTTSSSCCSS-CCEEEEESCHHHHHHHHHHHB
T ss_pred HHHHHHc-CCEEEEECcccccCccCCe---ecccc-----cCEEEEeCCCCccCCcCC-ceEEEEeCCHHHHHHHHHHHh
Confidence 9999999 99999999998653 3221 11111 13888898 79999779 99999986 889888877654
Q ss_pred cc------------cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeee-CCCcceEEeEec
Q 012095 330 QF------------TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDF 396 (471)
Q Consensus 330 ~~------------~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~-~p~~g~~~~~~~ 396 (471)
.. +...+.+.+.++.+.++. +++..++.+++++++.+.|.+++|+.+. .|.++.++|+.+
T Consensus 241 ~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~-------~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~ 313 (399)
T 2oga_A 241 YGSRQKYSHETKGTNSRLDEMQAAVLRIRLAH-------LDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLF 313 (399)
T ss_dssp TTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSE
T ss_pred cCccccccccccccCCCcCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEE
Confidence 21 224567777766666653 3344556667788899999988887764 355555555333
Q ss_pred CCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC-----------CC------------CCcEEEEeec--CHHHH
Q 012095 397 STYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF-----------GD------------DTCIRISYAA--SLTTL 451 (471)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f-----------~~------------~~~iRis~~~--~~e~i 451 (471)
+-.. .+..++.+.|.++ ||.+.++... +. .+++||++.. +++++
T Consensus 314 ~~~~----------~~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi 382 (399)
T 2oga_A 314 TVRT----------ERRDELRSHLDAR-GIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQA 382 (399)
T ss_dssp EEEC----------SSHHHHHHHHHHT-TBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHH
T ss_pred EEEC----------CCHHHHHHHHHHC-CCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHH
Confidence 2110 1577899988765 9999885421 10 1579999885 89999
Q ss_pred HHHHHHHHHHHHhhCC
Q 012095 452 QAAVERIKKGLLTLRP 467 (471)
Q Consensus 452 ~~~~~~l~~~l~~~~~ 467 (471)
+++++.|++++++++.
T Consensus 383 ~~~~~~l~~~~~~l~~ 398 (399)
T 2oga_A 383 LRVIDAVREWAERVDQ 398 (399)
T ss_dssp HHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999987653
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-33 Score=278.82 Aligned_cols=335 Identities=14% Similarity=0.119 Sum_probs=240.6
Q ss_pred cCCCeEEcCCCC--CCCC-ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.++|++.|. ++++ +|+.+.+++.+++..... ++. ....++++.+++.+.+.+| ..+++|++|+|+++++.
T Consensus 43 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~-~~~-~~~~~~~~~l~~~la~~~~--~~~~~v~~~~gg~~a~~ 118 (395)
T 1vef_A 43 EGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMA-MPQ-TLPTPMRGEFYRTLTAILP--PELNRVFPVNSGTEANE 118 (395)
T ss_dssp TSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCC-CCT-TSCCHHHHHHHHHHHHTSC--TTEEEEEEESSHHHHHH
T ss_pred CCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCC-Ccc-ccCCHHHHHHHHHHHHhcC--CCcCEEEEcCcHHHHHH
Confidence 466789999886 4555 688999999998875321 211 1123455666666666566 36789999999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCC-hHHHHHHcCCEEEE---ecCCCCCC-C-cCCHHHHHhhhccCCcEEEEcCCCCCc
Q 012095 170 QAVLAVC--SPGDEVIIPAPFWVS-YPEMARIADATPVI---LPTRISEN-F-LLDPKVLESKLTEKSRLLILCSPSNPT 241 (471)
Q Consensus 170 ~~~~~l~--~~gd~Vlv~~p~y~~-~~~~~~~~G~~~~~---v~~~~~~~-~-~ld~e~l~~~l~~~~~~i~i~~p~NPt 241 (471)
.+++++. .+||.|++.+|+|++ +...+...|.+.+. +|+..+.. + ..|+++|++++++++++|+++.++|||
T Consensus 119 ~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~t 198 (395)
T 1vef_A 119 AALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDEETAAVILEPVQGEG 198 (395)
T ss_dssp HHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCCTTEEEEEECSEETTT
T ss_pred HHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhccCEEEEEEeCccCCC
Confidence 9998764 578999999999975 44566777775211 12111000 0 148999999998888888776668999
Q ss_pred ccCC-CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCc-cccccCCCCCCceEEEecCCcccCccchhheeeEcCHH
Q 012095 242 GSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH 319 (471)
Q Consensus 242 G~~~-~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~ 319 (471)
|.++ +++++++|.++|++| +++||+||+|.++.+.+... ....... ..++ ||||.++ +|+|+||++++++
T Consensus 199 G~~~~~~~~l~~i~~l~~~~-~~~li~Dea~~~~~~~g~~~~~~~~~~~---~d~~---s~sK~~~-~g~~~G~~~~~~~ 270 (395)
T 1vef_A 199 GVRPATPEFLRAAREITQEK-GALLILDEIQTGMGRTGKRFAFEHFGIV---PDIL---TLAKALG-GGVPLGVAVMREE 270 (395)
T ss_dssp TSEECCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSSTHHHHTCC---CSEE---EECGGGG-TTSSCEEEEEEHH
T ss_pred CccCCCHHHHHHHHHHHHHc-CCEEEEEecccCCccCCchhHhhhcCCC---CCEE---EEccccc-CCCceEEEEehHH
Confidence 9765 788999999999999 99999999999754433211 1111221 2222 8899998 4999999999998
Q ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCC--CeeeCCCcceEEeEecC
Q 012095 320 FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG--VKMSEPQGAFYLFIDFS 397 (471)
Q Consensus 320 ~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g--~~~~~p~~g~~~~~~~~ 397 (471)
+++.+.......+++++++.+.++.++|+. ..+ ....++++++++++.+.|++++. +... +..|+++|++++
T Consensus 271 ~~~~l~~~~~~~~~~~~~~~~~a~~~al~~---~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~g~~~~~~~~ 344 (395)
T 1vef_A 271 VARSMPKGGHGTTFGGNPLAMAAGVAAIRY---LER--TRLWERAAELGPWFMEKLRAIPSPKIREV-RGMGLMVGLELK 344 (395)
T ss_dssp HHHTSCTTSSCCSSTTCHHHHHHHHHHHHH---HHH--HTTHHHHHHHHHHHHHHHHTSCCTTEEEE-EEETTEEEEEES
T ss_pred HHhhhccCCcCCCcCCCHHHHHHHHHHHHH---HHh--CCHHHHHHHHHHHHHHHHHHhhcCceEEE-EEEEEEEEEEEc
Confidence 887765422334566889999988888874 122 45677888899999999988732 1122 334566888886
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHHHHHH
Q 012095 398 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERIKKGL 462 (471)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~i~~~~~~l~~~l 462 (471)
. +..++.+.|++++||.+.|+. ++++|++++ .+++++++++++|++++
T Consensus 345 ~-------------~~~~l~~~l~~~~gi~v~~~~----~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 345 E-------------KAAPYIARLEKEHRVLALQAG----PTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp S-------------CSHHHHHHHHHHHCEECEESS----TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred C-------------hHHHHHHHHHHHCCeEEecCC----CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 3 356889988834499999963 679999876 38999999999999876
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-33 Score=282.89 Aligned_cols=333 Identities=14% Similarity=0.104 Sum_probs=231.5
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCC----------HHHHHHHHHHHHHHhCCCCCCCcEEEeCCh
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGT----------LELRSAICHKLKEENGLSYTPDQILVSNGA 164 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~----------~~lr~~ia~~~~~~~g~~~~~~~i~it~G~ 164 (471)
.+.+.|..+.+. ++|+.+++++.+.+.. ...| |..++ .++|+.+++++ | +++++|++|+|+
T Consensus 17 ~~~~~Ld~~~~~-~~~~~v~~a~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~~~g~ 87 (432)
T 3a9z_A 17 NRKVYMDYNATT-PLEPEVIQAVTEAMKE-AWGN-PSSSYVAGRKAKDIINTARASLAKMI----G--GKPQDIIFTSGG 87 (432)
T ss_dssp -CCEECBTTTCC-CCCHHHHHHHHHHHHH-CCSC-TTCSSHHHHHHHHHHHHHHHHHHHHH----T--CCGGGEEEESCH
T ss_pred CCcEEeeCCccC-CCCHHHHHHHHHHHHH-hcCC-CccCcHHHHHHHHHHHHHHHHHHHHc----C--CCcCeEEEeCCh
Confidence 357889988877 6688899999988865 3344 22222 46666666664 5 367899999999
Q ss_pred HHHHHHHHHHhc--------CCCCeEEEcCCCCCCh-----------------HHHHHHcCCEEEEecCCCCCCCcCCHH
Q 012095 165 KQSILQAVLAVC--------SPGDEVIIPAPFWVSY-----------------PEMARIADATPVILPTRISENFLLDPK 219 (471)
Q Consensus 165 ~~al~~~~~~l~--------~~gd~Vlv~~p~y~~~-----------------~~~~~~~G~~~~~v~~~~~~~~~ld~e 219 (471)
++++..++++++ ++||+|++++|+|..| ...++..|++++.++++.+ ++.+|++
T Consensus 88 t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d~~ 166 (432)
T 3a9z_A 88 TESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKV-NGQVEVE 166 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTT-TSSCCHH
T ss_pred HHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcc-cCCcCHH
Confidence 999999999886 5899999999999876 3444567999999998742 4568999
Q ss_pred HHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC----------eEEEEccCCCccccCCCCccccccCCC
Q 012095 220 VLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR----------LLVLSDEIYEHIIYAPATHTSFASLPG 289 (471)
Q Consensus 220 ~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~----------~~ii~De~y~~~~~~~~~~~~~~~~~~ 289 (471)
+|++++++++++|++++|+||||.+++ +++|.++|+++ + ++||+||+|..+. ....+...
T Consensus 167 ~l~~~i~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~-~~~~~~~~~~~~~livDea~~~~~----~~~~~~~~-- 236 (432)
T 3a9z_A 167 DILAAVRPTTCLVTIMLANNETGVIMP---ISEISRRIKAL-NQIRAASGLPRVLVHTDAAQALGK----RRVDVEDL-- 236 (432)
T ss_dssp HHHHTCCTTEEEEECCSBCTTTCBBCC---HHHHHHHHHHH-HHHHHHHTCCCCEEEEECTTTTTT----SCCCHHHH--
T ss_pred HHHHhccCCceEEEEECcccCcccccC---HHHHHHHHHhc-CcccccccCCceEEEEEchhhhCC----cccChhhc--
Confidence 999999988999999999999999999 67889999999 8 9999999997632 11222222
Q ss_pred CCCceEEEecCCcccCccchhheeeEcCHHH-HHHHHHH-------HhcccCCCChHHHHHHHHHHhccCCChHHHHHHH
Q 012095 290 MWERTLTVNGFSKAFAMTGWRLGYIAGPKHF-VAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 361 (471)
Q Consensus 290 ~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~-i~~l~~~-------~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~ 361 (471)
+..+++.||||.+| +|+||+++++++ +..+... ......+++.+.+.++.++|+. .++++++++
T Consensus 237 --~~d~~~~s~~K~~g---~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~---~~~~~~~~~ 308 (432)
T 3a9z_A 237 --GVDFLTIVGHKFYG---PRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADL---VSENCETYE 308 (432)
T ss_dssp --CCSEEEEEGGGTTC---CSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred --CCCEEEEehhHhcC---CcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHH---HHhhHHHHH
Confidence 22366899999875 579999998765 3222211 1122345678888888778874 355788899
Q ss_pred HHHHHHHHHHHHHhcCCCCCeee--CC-----CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC
Q 012095 362 KAFRERRDFLVKSFGELEGVKMS--EP-----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 434 (471)
Q Consensus 362 ~~~~~~r~~l~~~L~~~~g~~~~--~p-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f 434 (471)
++++++++++.+.|++++|+.+. .| ..+..+++.+++. + .+..++.+.+ .+|.+.+|..+
T Consensus 309 ~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~l---~~i~~~~G~~~ 375 (432)
T 3a9z_A 309 AHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGS-Q---------LRGYMVLAQC---QTLLASVGASC 375 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECST-T---------CCHHHHHHHC---SSEECBSSCGG
T ss_pred HHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCC-C---------CcHHHHHHHh---cCeEEeccccc
Confidence 99999999999999886565432 33 1232355556531 0 1455666654 27777776543
Q ss_pred ---------------CC-----CCcEEEEeec--CHHHHHHHHHHHHHHHHhhCCC
Q 012095 435 ---------------GD-----DTCIRISYAA--SLTTLQAAVERIKKGLLTLRPG 468 (471)
Q Consensus 435 ---------------~~-----~~~iRis~~~--~~e~i~~~~~~l~~~l~~~~~~ 468 (471)
|. .+++||+++. +++++++++++|++++++++.+
T Consensus 376 ~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~~~ 431 (432)
T 3a9z_A 376 HSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLEGP 431 (432)
T ss_dssp GGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred cCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 22 2789999997 8999999999999999887654
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=279.74 Aligned_cols=354 Identities=13% Similarity=0.085 Sum_probs=247.1
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+++||++.|. ..++. |+.+++++.+++.+..+ .+..+..+++.++++++.+.++. ..+ |++|+|+++++.
T Consensus 47 ~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~--~~~~~~~~~~~~la~~l~~~~~~--~~~-v~~~~ggseA~~ 121 (452)
T 3n5m_A 47 QGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSY--FPMSQSHEPAIKLAEKLNEWLGG--EYV-IFFSNSGSEANE 121 (452)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCC--CCTTSEEHHHHHHHHHHHHHHTS--CEE-EEEESSHHHHHH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCC--cccccCCHHHHHHHHHHHHhCCC--Cce-EEEeCchHHHHH
Confidence 577899999884 34443 78999999999876433 34456678888888888888774 334 999999999999
Q ss_pred HHHHHhc-----C---CCCeEEEcCCCCCChHHHHHHcCCE-------------EEEecCCCCCCCcC-C---------H
Q 012095 170 QAVLAVC-----S---PGDEVIIPAPFWVSYPEMARIADAT-------------PVILPTRISENFLL-D---------P 218 (471)
Q Consensus 170 ~~~~~l~-----~---~gd~Vlv~~p~y~~~~~~~~~~G~~-------------~~~v~~~~~~~~~l-d---------~ 218 (471)
.+++.++ . ++|.|++.+|+|+++...+...+.. ...++....-.+.. | +
T Consensus 122 ~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (452)
T 3n5m_A 122 TAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECV 201 (452)
T ss_dssp HHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHH
Confidence 9999887 5 7899999999999887666555432 23333211100001 2 8
Q ss_pred HHHHhhhc----cCCcEEEEcCC-CCCcccCC-CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCC
Q 012095 219 KVLESKLT----EKSRLLILCSP-SNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292 (471)
Q Consensus 219 e~l~~~l~----~~~~~i~i~~p-~NPtG~~~-~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 292 (471)
++|+++++ +++++|+++.+ +| ||.++ +++++++|.++|++| |++||+||+|.++.+.|.. ...... +
T Consensus 202 ~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~g~g~~g~~-~~~~~~----~ 274 (452)
T 3n5m_A 202 KEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKH-GALLISDEVICGFGRTGKA-FGFMNY----D 274 (452)
T ss_dssp HHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGGGT----T
T ss_pred HHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHc-CCEEEEecchhCCCccccc-chhhhc----C
Confidence 99999887 45677777777 89 99766 888899999999999 9999999999987554431 111111 1
Q ss_pred ceEEEecCCcccCccc-hhheeeEcCHHHHHHHHH------HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHH
Q 012095 293 RTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 365 (471)
Q Consensus 293 ~~i~~~S~SK~~g~~G-~R~G~v~~~~~~i~~l~~------~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~ 365 (471)
....+.+|||.++ .| +|+||+++++++++.+.. .....+++.+++++.++.++|+.... ++.+++.++..+
T Consensus 275 ~~~di~t~sK~l~-~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~ 352 (452)
T 3n5m_A 275 VKPDIITMAKGIT-SAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIEN-ENLIERSAQMGS 352 (452)
T ss_dssp CCCSEEEECGGGG-TTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHH
T ss_pred CCCCEEeeccccc-CCCcceEEEEECHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHH
Confidence 1122447999998 49 999999999999988743 11335677899999999999874211 234555555555
Q ss_pred HHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEE
Q 012095 366 ERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRIS 443 (471)
Q Consensus 366 ~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis 443 (471)
..++.+.+.+.+++++....+.|.| +++.+....... ..+ ......++++.|+++ ||.+.|+..|.. ++++||+
T Consensus 353 ~l~~~L~~~~~~~~~~~~~~~~g~~-~~i~~~~~~~~~-~~~-~~~~~~~~~~~l~~~-Gv~~~~~~~~~~~~~~~iRi~ 428 (452)
T 3n5m_A 353 LLLEQLKEEIGEHPLVGDIRGKGLL-VGIELVNDKETK-EPI-DNDKIASVVNACKEK-GLIIGRNGMTTAGYNNILTLA 428 (452)
T ss_dssp HHHHHHHHHHTTCTTEEEEEESSSC-EEEEEEEETTTT-EEC-CHHHHHHHHHHHHHT-TEECEECTTSSTTCCCEEEEC
T ss_pred HHHHHHHHHHhcCCCeEEEEEEEEE-EEEEEecCCccc-CCC-CHHHHHHHHHHHHHC-CcEEeecCcccCCCCCEEEEE
Confidence 5556666555666666666666665 555553210000 000 000124688888876 999999986642 5799997
Q ss_pred ee--cCHHHHHHHHHHHHHHHHh
Q 012095 444 YA--ASLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 444 ~~--~~~e~i~~~~~~l~~~l~~ 464 (471)
++ .+++++++++++|++++++
T Consensus 429 ~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 429 PPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHh
Confidence 55 4999999999999999864
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=277.29 Aligned_cols=328 Identities=13% Similarity=0.077 Sum_probs=237.3
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHH
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~ 174 (471)
...+.+..|++++++++.+.+++.+.+ +...|++..+..+|++.+++++ |. +..++++|+++++..++++
T Consensus 13 ~~~~~~~~~~~~~g~~p~v~~ai~~~~--~~~~~~~~~~~~~l~~~la~~~----~~----~~~i~~~~g~~a~~~a~~~ 82 (359)
T 3pj0_A 13 TPYKLGGNGPRNVGVLTEALQNIDDNL--ESDIYGNGAVIEDFETKIAKIL----GK----QSAVFFPSGTMAQQIALRI 82 (359)
T ss_dssp CSEESSSSSCCBHHHHHHHTTTSCTTC--BCCBTTBSHHHHHHHHHHHHHH----TC----SEEEEESCHHHHHHHHHHH
T ss_pred cchhhcCCCccccCCCHHHHHHHHhhc--ccCcccCCHHHHHHHHHHHHHh----CC----CcEEEeCCHHHHHHHHHHH
Confidence 346777788888877888988888743 2356777778889999988886 32 2335557888999999999
Q ss_pred hcCCCCe--EEEcCCCCCChH---HHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCc-ccCCCHH
Q 012095 175 VCSPGDE--VIIPAPFWVSYP---EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT-GSVYPKN 248 (471)
Q Consensus 175 l~~~gd~--Vlv~~p~y~~~~---~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPt-G~~~~~~ 248 (471)
++.+||. |+++.++|..+. ......|++++.++. +++.+|+++++++ .+++++|++++||||| |.+++.+
T Consensus 83 ~~~~g~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~---~~~~~d~~~l~~~-~~~~~~v~~~~p~n~~~G~~~~~~ 158 (359)
T 3pj0_A 83 WADRKENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGT---ANQLLTIDDIKSL-REPVSSVLIELPQREIGGQLPAFE 158 (359)
T ss_dssp HHHHHTCCEEEECTTCHHHHSSTTHHHHHHCCEEEECSC---TTSCCCHHHHHTC-SSCCSEEEEESSBGGGTSBCCCHH
T ss_pred HHhcCCCcEEEEeccceeeehhcchHHHhcCceEEecCC---cCCCcCHHHHHhc-cCCceEEEEEecccCCCcccCCHH
Confidence 9989887 555555543221 223567999999986 3467999999998 7789999999999998 7999999
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCcccc--CCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHH
Q 012095 249 LLDEIARIVAKHPRLLVLSDEIYEHIIY--APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 326 (471)
Q Consensus 249 ~l~~i~~l~~~~~~~~ii~De~y~~~~~--~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~ 326 (471)
++++|+++|++| +++||+|++|..+.. .+.. ...+.. ...+++.||||.++.++ . ||+++++++++.+..
T Consensus 159 ~l~~l~~~~~~~-~~~li~D~a~~~~~~~~~~~~---~~~~~~--~~d~~~~s~sK~~~~~~-g-g~~~~~~~l~~~~~~ 230 (359)
T 3pj0_A 159 ELEKISEYCHEQ-GISLHLDGARLWEITPFYQKS---AEEICA--LFDSVYVSFYKGIGGIA-G-AILAGNDDFVQEAKI 230 (359)
T ss_dssp HHHHHHHHHHHH-TCEEEEEETTCGGGHHHHTCC---HHHHHT--TCSEEEEESSSTTCCSS-C-EEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCEEEEECcchhcchhhhCCC---HHHhhc--cCCEEEEeccccCCCcc-e-EEEECCHHHHHHHHH
Confidence 999999999999 999999999875431 1211 111111 12255679999987553 2 888999999999987
Q ss_pred HHhcccCCC--ChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeee-CCCcceEEeEecCCccCCc
Q 012095 327 IQSQFTSGA--SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDFSTYYGSE 403 (471)
Q Consensus 327 ~~~~~~~~~--~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~-~p~~g~~~~~~~~~~~~~~ 403 (471)
.+.....+. ....+.++..+++. +. +..+++.++++++.+.|++++|+++. .|.+++|+|++++....
T Consensus 231 ~~~~~~~~~~~~~~~~~a~~~~l~~------~~-~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-- 301 (359)
T 3pj0_A 231 WKRRYGGDLISLYPYILSADYYFEK------RI-GKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENSAD-- 301 (359)
T ss_dssp HHHHTTCCCSCCHHHHHHHHHHHHH------HG-GGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEESSCHH--
T ss_pred HHHHhCCCcchhHHHHHHHHHHHHH------HH-HHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEecCccc--
Confidence 655443333 23333333444442 22 33445788889999999999899885 56667778888864210
Q ss_pred ccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCC--CcEEEEee-----cCHHHHHHHHHHHHHH
Q 012095 404 AEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD--TCIRISYA-----ASLTTLQAAVERIKKG 461 (471)
Q Consensus 404 ~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~--~~iRis~~-----~~~e~i~~~~~~l~~~ 461 (471)
.+..++.+.|.++ ||.+.||..|+.+ +++|+++. .+.+++++++++|.++
T Consensus 302 -------~~~~~l~~~l~~~-GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 302 -------EIGAILTKIQDET-GVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp -------HHHHHHHHHHHHH-CEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred -------hhHHHHHHHHHhc-CcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 1356777777665 9999999877643 58999887 3789999999999875
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-33 Score=276.79 Aligned_cols=330 Identities=13% Similarity=0.096 Sum_probs=241.9
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPN--AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 173 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~--~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~ 173 (471)
+.+.|..| +.++++.+.+++.+... ..|.|. ....++++.++++++...| +++++|++|+|+++++..+++
T Consensus 5 ~~~~~~p~--p~~~~~~v~~a~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~v~~~~g~t~al~~~~~ 77 (385)
T 2bkw_A 5 VDTLLIPG--PIILSGAVQKALDVPSL---GHTSPEFVSIFQRVLKNTRAVFKSAAA--SKSQPFVLAGSGTLGWDIFAS 77 (385)
T ss_dssp CCEECSSS--SCCCCHHHHHTTSCCCC---CTTSHHHHHHHHHHHHHHHHHTTCCGG--GTCEEEEEESCTTHHHHHHHH
T ss_pred cceeecCC--CcCchHHHHHHHhcccc---ccCCHHHHHHHHHHHHHHHHHhCCCCC--CCCceEEEcCchHHHHHHHHH
Confidence 34556655 33456777777654321 123232 1345667777777654333 356899999999999999999
Q ss_pred Hhc---CCCCeEEEc-CCCCCChH-HHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc-CCcEEEEcCCCCCcccCCCH
Q 012095 174 AVC---SPGDEVIIP-APFWVSYP-EMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPK 247 (471)
Q Consensus 174 ~l~---~~gd~Vlv~-~p~y~~~~-~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~-~~~~i~i~~p~NPtG~~~~~ 247 (471)
+++ ++||+|+++ .|+|..+. ..++..|++++.++++ +.++.+|+++|++++++ ++++|++++|+||||.+++
T Consensus 78 ~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~- 155 (385)
T 2bkw_A 78 NFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPL-KIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSD- 155 (385)
T ss_dssp HHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCS-STTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC-
T ss_pred HHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCceEEEecC-CCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcC-
Confidence 998 899999887 55666653 6778899999999982 23567899999999987 8999999999999999999
Q ss_pred HHHHHHHHHHHhCC-CeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCccc-CccchhheeeEcCHHHHH-HH
Q 012095 248 NLLDEIARIVAKHP-RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAGPKHFVA-AC 324 (471)
Q Consensus 248 ~~l~~i~~l~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~R~G~v~~~~~~i~-~l 324 (471)
+++|.++|++|+ +++||+||+|.... .... +.. .+..+++.|+||.+ |++| +||+++++++++ .+
T Consensus 156 --l~~i~~~~~~~~~~~~li~D~a~~~~~----~~~~---~~~-~~~d~~~~s~~K~~~~~~G--~G~~~~~~~~~~~~l 223 (385)
T 2bkw_A 156 --LKAISQAIKQTSPETFFVVDAVCSIGC----EEFE---FDE-WGVDFALTASQKAIGAPAG--LSISLCSSRFMDYAL 223 (385)
T ss_dssp --HHHHHHHHHHHCTTSEEEEECTTTTTT----SCCC---TTT-TTCSEEEEESSSTTCCCSC--EEEEEECHHHHHHHT
T ss_pred --HHHHHHHHHhhCCCCEEEEECccccCC----cccc---ccc-cCceEEEecCccccccCCc--ceEEEEcHHHHHHHH
Confidence 889999999973 79999999997421 1111 211 34568999999966 4567 499999998877 54
Q ss_pred H----------------------HHHhc---ccCCCChHHHHHHHHHHhccCCChHH-HHHHHHHHHHHHHHHHHHh-cC
Q 012095 325 N----------------------KIQSQ---FTSGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSF-GE 377 (471)
Q Consensus 325 ~----------------------~~~~~---~~~~~~~~~q~aa~~~L~~~~~~~~~-~~~~~~~~~~~r~~l~~~L-~~ 377 (471)
. ..... ...+++...+.++.++|+. ..++ +++.+++++++++++.+.| ++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~ 300 (385)
T 2bkw_A 224 NDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKE---ILEEGLHKRWDLHREMSDWFKDSLVNG 300 (385)
T ss_dssp CHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHH---HHHccHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 11110 0134677777777777764 2333 7788899999999999999 88
Q ss_pred CCCCeeeCCC-----cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC-CCCcEEEE-ee-----
Q 012095 378 LEGVKMSEPQ-----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-DDTCIRIS-YA----- 445 (471)
Q Consensus 378 ~~g~~~~~p~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~-~~~~iRis-~~----- 445 (471)
+ |+++..+. .+.++|+.++ +..++.+.|.+ +||.+.+|..+. .++++|++ ++
T Consensus 301 ~-g~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~-~gi~v~~g~~~~~~~~~iRis~~~~~~~~ 364 (385)
T 2bkw_A 301 L-QLTSVSRYPSNMSAHGLTAVYVA--------------DPPDVIAFLKS-HGVVIAGGIHKDIGPKYIRIGHMGVTACN 364 (385)
T ss_dssp T-CCEESSCSSSTTBCSSCEEEECS--------------CHHHHHHHHHH-TTEECBCCCCTTTGGGEEEECCCGGGTSS
T ss_pred c-CceecccCcccccCCceEEEecC--------------CHHHHHHHHHH-CCeEEeCCCCcccCCCEEEEEcccccccc
Confidence 8 88877532 4667888875 35678888876 599999998654 35799999 76
Q ss_pred cCHHHHHHHHHHHHHHHHhh
Q 012095 446 ASLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 446 ~~~e~i~~~~~~l~~~l~~~ 465 (471)
.+++++++++++|+++++++
T Consensus 365 ~~~e~i~~~~~~l~~~~~~~ 384 (385)
T 2bkw_A 365 KNLPYMKNCFDLIKLALQRK 384 (385)
T ss_dssp TTCTHHHHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 38899999999999987654
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=273.70 Aligned_cols=299 Identities=15% Similarity=0.167 Sum_probs=217.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCC--eEEEcCCCCCChHH---HHHHc
Q 012095 125 FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGD--EVIIPAPFWVSYPE---MARIA 199 (471)
Q Consensus 125 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd--~Vlv~~p~y~~~~~---~~~~~ 199 (471)
...|++..+..+|++++++++. . +..++++|+++++..++++++.+|| .|+++.++|..+.. .....
T Consensus 40 ~~~y~~~~~~~~l~~~la~~~~----~----~~~i~~~~G~~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~~~~~~~ 111 (357)
T 3lws_A 40 SDQYGTGAIIEPFEQKFADVLG----M----DDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELH 111 (357)
T ss_dssp CEETTEETTHHHHHHHHHHHHT----C----SEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHS
T ss_pred cccccCChHHHHHHHHHHHHhC----C----CcEEEecCcHHHHHHHHHHHhhcCCCcEEEecccceeeeeccchhhhcc
Confidence 3568777888999999999863 2 3345557778899999999999988 67777666543322 45677
Q ss_pred CCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCc-ccCCCHHHHHHHHHHHHhCCCeEEEEccCCCcc--cc
Q 012095 200 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT-GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI--IY 276 (471)
Q Consensus 200 G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPt-G~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~--~~ 276 (471)
|++++.++. +++.+|+++++++. ++++|++++||||| |.+++.+++++|+++|++| |++||+||+|... .+
T Consensus 112 g~~~~~v~~---~~~~~d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~-~~~li~D~a~~~~~~~~ 185 (357)
T 3lws_A 112 PIETILVGA---ADRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRER-GIRLHLDGARLFEMLPY 185 (357)
T ss_dssp SCEEEECSC---TTSCCCHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHT-TCEEEEEETTHHHHHHH
T ss_pred CcEEEEecC---CCCCcCHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHHHHHHc-CCEEEEECchhhhhhhh
Confidence 999998884 33569999999984 48999999999998 9999999999999999999 9999999998621 11
Q ss_pred CCCCccccccCCCCCCceEEEecCCccc-CccchhheeeEcCHHHHHHHHHHHhcccCCC--ChHHHHHHHHHHhccCCC
Q 012095 277 APATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAGPKHFVAACNKIQSQFTSGA--SSISQKAGVAALGLGYAG 353 (471)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~--~~~~q~aa~~~L~~~~~~ 353 (471)
.+.....+. ...+ +++.||||.+ ++.| ||+++++++++.+.+.+.....+. ....+.++..+|+.
T Consensus 186 ~~~~~~~~~---~~~d--~~~~s~sK~~~~~~g---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---- 253 (357)
T 3lws_A 186 YEKTAAEIA---GLFD--SIYISFYKGLGGIAG---AILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYEL---- 253 (357)
T ss_dssp HTCCHHHHH---TTSS--EEEEESSSTTCCSSC---EEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHH----
T ss_pred cCCChHHHH---hcCC--EEEEeccccCCCCce---EEEEcCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHH----
Confidence 122111111 1123 4478999999 5444 999999999999987765444333 33344444455542
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCCCee-eCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC
Q 012095 354 GEVVSKMVKAFRERRDFLVKSFGELEGVKM-SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD 432 (471)
Q Consensus 354 ~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~-~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~ 432 (471)
+.+. .+++.++++++.+.|++++|+++ ..|.+++|+|++++.... .+..++.+.|.++ ||.+.||.
T Consensus 254 --~~~~-~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~-Gi~v~~g~ 320 (357)
T 3lws_A 254 --RKDR-MGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAA---------DISPKLEQVQEET-GLGFVGYL 320 (357)
T ss_dssp --HTTC-HHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCHH---------HHHHHHHHHHHHH-CEESCSCC
T ss_pred --HHHH-HHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCChH---------HHHHHHHHHHHhc-CeEEeccc
Confidence 3333 33467788899999999989988 356777889999874200 0256777777665 99999997
Q ss_pred CCCCC-CcEEEEee-----cCHHHHHHHHHHHHHHH
Q 012095 433 AFGDD-TCIRISYA-----ASLTTLQAAVERIKKGL 462 (471)
Q Consensus 433 ~f~~~-~~iRis~~-----~~~e~i~~~~~~l~~~l 462 (471)
.|... .++|++++ .+.+++++++++|.+++
T Consensus 321 ~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 321 VDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp EECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred ccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 66532 38999987 37899999999998765
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-33 Score=276.09 Aligned_cols=323 Identities=11% Similarity=0.083 Sum_probs=238.8
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcC---------CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-c-EEEeCCh
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREG---------FTRYTPNAGTLELRSAICHKLKEENGLSYTPD-Q-ILVSNGA 164 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~---------~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~-i~it~G~ 164 (471)
.++.+..|. .++|+.+++++.+++.+. ..+|+ .+..++++.+.+.+++.+|. .++ + +++|+|+
T Consensus 4 ~~~l~~~~~--~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~la~~~g~--~~~~~~i~~t~g~ 77 (362)
T 2c0r_A 4 RAYNFNAGP--AALPLEVLERAQAEFVDYQHTGMSIMEMSHRG--AVYEAVHNEAQARLLALLGN--PTGYKVLFIQGGA 77 (362)
T ss_dssp CCEECCSSS--CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTS--HHHHHHHHHHHHHHHHHTTC--CSSEEEEEESSHH
T ss_pred ceeeccCCC--CCCCHHHHHHHHHHHhhhhhcCccccccCCCc--HHHHHHHHHHHHHHHHHhCC--CCCcEEEEECCCc
Confidence 356677763 567889999998876431 12222 23466888999999988885 343 6 4678999
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCCCC-h-HHHHHHcCCEEEEecCCCC--CCCcCCHHHHHhhhccCCcEEEEcCCCCC
Q 012095 165 KQSILQAVLAVCSPGDEVIIPAPFWVS-Y-PEMARIADATPVILPTRIS--ENFLLDPKVLESKLTEKSRLLILCSPSNP 240 (471)
Q Consensus 165 ~~al~~~~~~l~~~gd~Vlv~~p~y~~-~-~~~~~~~G~~~~~v~~~~~--~~~~ld~e~l~~~l~~~~~~i~i~~p~NP 240 (471)
++++..++.++++|||+|+++++.+.+ + ...++..| +++.++++.+ .++.+|.++++ +++++|+|++++|+||
T Consensus 78 t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~~t~~v~~~~~~n~ 154 (362)
T 2c0r_A 78 STQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQDNAAYLHLTSNETI 154 (362)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCTTEEEEEEESEETT
T ss_pred hHHHHHHHHhcCCCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cCCCcCEEEEeCCcCc
Confidence 999999999999999999988765433 2 35677889 9999998632 23335666654 6778999999999999
Q ss_pred cccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHH
Q 012095 241 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 320 (471)
Q Consensus 241 tG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~ 320 (471)
||.+++ ++++| + ++++|+|++|..+.. ... +. +..+++.|+||.+|++| +||+++++++
T Consensus 155 tG~~~~--~l~~i------~-~~~vivD~a~~~~~~----~~~---~~---~~d~~~~s~~K~~g~~G--~G~l~~~~~~ 213 (362)
T 2c0r_A 155 EGAQFK--AFPDT------G-SVPLIGDMSSDILSR----PFD---LN---QFGLVYAGAQKNLGPSG--VTVVIVREDL 213 (362)
T ss_dssp TTEECS--SCCCC------T-TSCEEEECTTTTTSS----CCC---GG---GCSEEEEETTTTTCCSS--CEEEEEEGGG
T ss_pred cceecc--ccccc------C-CCEEEEEChhhccCC----ccc---hh---HCcEEEEeccccccCcC--cEEEEEcHHH
Confidence 999754 25554 7 899999999986421 111 21 11478889999999888 9999999988
Q ss_pred HHHHHHH------------HhcccCCCChHHHHHHHHHHhccCCChH--HHHHHHHHHHHHHHHHHHHhcCCCCC-eeeC
Q 012095 321 VAACNKI------------QSQFTSGASSISQKAGVAALGLGYAGGE--VVSKMVKAFRERRDFLVKSFGELEGV-KMSE 385 (471)
Q Consensus 321 i~~l~~~------------~~~~~~~~~~~~q~aa~~~L~~~~~~~~--~~~~~~~~~~~~r~~l~~~L~~~~g~-~~~~ 385 (471)
++.+... ......+++.+.|.++.++|+. ..+ .+++++++++++++++.+.|++++++ .+..
T Consensus 214 ~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 290 (362)
T 2c0r_A 214 VAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKW---IEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCV 290 (362)
T ss_dssp SSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHH---HHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESS
T ss_pred HhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCC
Confidence 7655421 1123456888899999988874 233 68899999999999999999998436 6532
Q ss_pred C---CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHH
Q 012095 386 P---QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKK 460 (471)
Q Consensus 386 p---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~ 460 (471)
+ .++.++++.++... +..++++.|.++ ||.+.+|..| .+++|+|++. ++++++++++.|++
T Consensus 291 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~L~~~-gi~~~~g~~~--~~~iRis~~~~~~~e~i~~l~~~l~~ 356 (362)
T 2c0r_A 291 DVDSRSDMNITFRLASEE-----------LEKEFVKASEQE-GFVGLKGHRS--VGGLRASIYNAVPYESCEALVQFMEH 356 (362)
T ss_dssp CGGGBCSSEEEEECSCHH-----------HHHHHHHHHHHT-TEESCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ChHHcCCcEEEEEcCCcc-----------hHHHHHHHHHHC-CCeeccCCCC--CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 2 23455788876421 567888887655 9999998766 4689999986 88999999999999
Q ss_pred HHHhh
Q 012095 461 GLLTL 465 (471)
Q Consensus 461 ~l~~~ 465 (471)
++++.
T Consensus 357 ~~~~~ 361 (362)
T 2c0r_A 357 FKRSR 361 (362)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88764
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=279.53 Aligned_cols=354 Identities=14% Similarity=0.124 Sum_probs=243.5
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.+||+..|. ..++. ++.+.+++.+++.+. .+|+...+..+++.++++++.+.++.. ..++|++|+|+++++.
T Consensus 59 ~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~~v~~~~sGseA~~ 136 (451)
T 3oks_A 59 DGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDF-THTCFMVTPYEGYVAVCEQLNRLTPVR-GDKRSALFNSGSEAVE 136 (451)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTC-SCCTTTTSCCHHHHHHHHHHHHHSSCC-SSEEEEEESSHHHHHH
T ss_pred CCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhc-ccccCCccCCHHHHHHHHHHHHhCCcC-CCCEEEEeCcHHHHHH
Confidence 577899999884 55555 789999999998664 456666677888999999998877632 3579999999999999
Q ss_pred HHHHHhcC-C-CCeEEEcCCCCCChHHHHHHcCC--------------EEEEecCCCC--CCC-cC--------CHHHHH
Q 012095 170 QAVLAVCS-P-GDEVIIPAPFWVSYPEMARIADA--------------TPVILPTRIS--ENF-LL--------DPKVLE 222 (471)
Q Consensus 170 ~~~~~l~~-~-gd~Vlv~~p~y~~~~~~~~~~G~--------------~~~~v~~~~~--~~~-~l--------d~e~l~ 222 (471)
.+++.+.. + ++.|++.+++|+++...+...+. .+..+|.... +.+ ++ +++.++
T Consensus 137 ~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 216 (451)
T 3oks_A 137 NAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAI 216 (451)
T ss_dssp HHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHH
Confidence 99987654 3 48899999999988766655432 3455554310 000 01 244444
Q ss_pred hhh----ccCCcEEEEcCCCCCcc--cCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEE
Q 012095 223 SKL----TEKSRLLILCSPSNPTG--SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLT 296 (471)
Q Consensus 223 ~~l----~~~~~~i~i~~p~NPtG--~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~ 296 (471)
+.+ .++..++++++|.|++| ...+++++++|.++|++| |++||+||+|.++.+.+.. ..+..... ...
T Consensus 217 ~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~-g~~lI~DEv~~g~g~~g~~-~~~~~~~~----~pd 290 (451)
T 3oks_A 217 TVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKN-DVVFIADEVQTGFARTGAM-FACEHEGI----DPD 290 (451)
T ss_dssp HHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSS-SGGGGGTC----CCS
T ss_pred HHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHc-CCEEEEEecccCCCccccc-hhhhhcCC----CCC
Confidence 444 33455677777866655 455788899999999999 9999999999987554431 11111111 111
Q ss_pred EecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhc
Q 012095 297 VNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 376 (471)
Q Consensus 297 ~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~ 376 (471)
+.||||.++ .|||+||+++++++++.+.......+++.++++|.++.++|+.... ++++++.++..+..++.+.+.+.
T Consensus 291 i~t~sK~l~-~G~~iG~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~ 368 (451)
T 3oks_A 291 LIVTAKGIA-GGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIES-EGLVARAQQIEKIMKDRLGRLQA 368 (451)
T ss_dssp EEEECGGGG-TTSSCEEEEEEHHHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeehhhhh-CCcceEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHh
Confidence 338999998 5999999999999999887666667788999999999999874110 23344444444444444554444
Q ss_pred CCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHH
Q 012095 377 ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAA 454 (471)
Q Consensus 377 ~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~ 454 (471)
+.+.+....+.|. ++|+.+... ..... ......++++.|+++ ||.+.|+..|+ +++|++++. ++++++++
T Consensus 369 ~~~~~~~~~~~G~-~~~~~~~~~-~~~~~---~~~~~~~~~~~l~~~-Gv~v~~~~~~~--~~iRi~~~~~~t~e~i~~~ 440 (451)
T 3oks_A 369 EDDRIGDVRGRGA-MIAMELVKA-GTTEP---DADLTKALCAGAHAA-GVIVLSCGTYG--NVVRFLPPLSIGDDLLNEG 440 (451)
T ss_dssp HCTTEEEEEEETT-EEEEEEBST-TSCCB---CHHHHHHHHHHHHHT-TEECEEECTTS--CEEEECCCTTCCHHHHHHH
T ss_pred hCCCeEEEEEeeE-EEEEEEecC-ccCCC---CHHHHHHHHHHHHhC-CcEEecCCCCC--CEEEEECCCCCCHHHHHHH
Confidence 4555555544555 566666321 00000 001356788888876 99999987653 689998664 89999999
Q ss_pred HHHHHHHHHh
Q 012095 455 VERIKKGLLT 464 (471)
Q Consensus 455 ~~~l~~~l~~ 464 (471)
+++|++++++
T Consensus 441 l~~l~~~l~~ 450 (451)
T 3oks_A 441 LDVLEEVLRG 450 (451)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9999999864
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-30 Score=264.43 Aligned_cols=330 Identities=18% Similarity=0.245 Sum_probs=244.1
Q ss_pred CCCCCCCCC-hHHHHHHHHHHHHcCCCC-CCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh-cC
Q 012095 101 AAGEPDFDT-PVLIAEAGINAIREGFTR-YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CS 177 (471)
Q Consensus 101 ~~g~~~~~~-p~~v~~a~~~~~~~~~~~-Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l-~~ 177 (471)
+.|.|++++ |+.+++++.+++..+... |++..|..++++.+++.+.+.+|.+ ++++++|+++++..++.++ ++
T Consensus 5 ~~g~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~----~~i~~~~gt~al~~~~~~~~~~ 80 (418)
T 2c81_A 5 FDHWPEWPQHSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVP----YCVPTTSGSTALMLALEALGIG 80 (418)
T ss_dssp ---CCCSSCCCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHTTCC
T ss_pred cCCCCCCCCCCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHcCCC
Confidence 456777776 789999999998775544 8888888777888888888777743 5666777789999999999 89
Q ss_pred CCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHH
Q 012095 178 PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV 257 (471)
Q Consensus 178 ~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~ 257 (471)
+||+|+++.|+|.++...++..|++++.++++. +++.+|++++++++++++++|+++ ||||...+ +++|.++|
T Consensus 81 ~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~~~---~~~i~~~~ 153 (418)
T 2c81_A 81 EGDEVIVPSLTWIATATAVLNVNALPVFVDVEA-DTYCIDPQLIKSAITDKTKAIIPV---HLFGSMAN---MDEINEIA 153 (418)
T ss_dssp TTCEEEEESSSCTHHHHHHHHTTCEEEEECBCT-TTCSBCHHHHGGGCCTTEEEECCB---CCTTCCCC---HHHHHHHH
T ss_pred CcCEEEECCCccHhHHHHHHHcCCEEEEEecCC-CCCCcCHHHHHHhhCCCCeEEEEe---CCcCCccc---HHHHHHHH
Confidence 999999999999999999999999999999864 357899999999998888888764 58999877 89999999
Q ss_pred HhCCCeEEEEccCCCccc-cCCCCccccccCCCCCCceEEEecC--CcccCccchhheeeEcC-HHHHHHHHHHHhccc-
Q 012095 258 AKHPRLLVLSDEIYEHII-YAPATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFT- 332 (471)
Q Consensus 258 ~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~g~~G~R~G~v~~~-~~~i~~l~~~~~~~~- 332 (471)
++| +++||+||+|..+. +++. .+..+. .+.+.|| ||.++. | |+||++++ +++++.+........
T Consensus 154 ~~~-~~~li~D~a~~~~~~~~~~---~~~~~~-----~~~~~s~s~~K~~~~-g-~~g~~~~~~~~l~~~~~~~~~~~~~ 222 (418)
T 2c81_A 154 QEH-NLFVIEDCAQSHGSVWNNQ---RAGTIG-----DIGAFSCQQGKVLTA-G-EGGIIVTKNPRLFELIQQLRADSRV 222 (418)
T ss_dssp HHT-TCEEEEECTTCTTCEETTE---ETTSSS-----SEEEEECCTTSSSCS-S-SCEEEEESCHHHHHHHHHHHBTTEE
T ss_pred HHC-CCEEEEECcccccCccCCE---eccccc-----ceEEEeccCCcccCC-C-CeEEEEECCHHHHHHHHHHHHhCcc
Confidence 999 99999999999875 4432 111111 2778888 999985 8 99999994 788888876543311
Q ss_pred -----------CC--------------CChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeee-CC
Q 012095 333 -----------SG--------------ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EP 386 (471)
Q Consensus 333 -----------~~--------------~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~-~p 386 (471)
+. .+. .+.+ .. +.. .+++++..++.+++++++.+.|.+++|+++. .+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~aa-~~-~~~----l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 295 (418)
T 2c81_A 223 YCDDSSELMHGDMQLVKKGDIQGSNYCLSE-FQSA-IL-LDQ----LQELDDKNAIREKNAMFLNDALSKIDGIKVMKRP 295 (418)
T ss_dssp ECSCGGGCCTTCBSEEECCSSCCCBCCCCH-HHHH-HH-HHH----HTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCC
T ss_pred ccccccccccchhhccccccccCcCCCcCH-HHHH-HH-HHH----HHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCC
Confidence 10 111 1111 11 111 2335667777778889999999998898886 45
Q ss_pred Cc-ceE---Ee-EecCCccCCcccCCCCCCCHHHHHHHHHHcCCEE---EECCCCC------------------------
Q 012095 387 QG-AFY---LF-IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA---LVPGDAF------------------------ 434 (471)
Q Consensus 387 ~~-g~~---~~-~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~---v~pg~~f------------------------ 434 (471)
.+ +.. ++ +.+++.. .. ..+..++.+.|.+++||. +.+|...
T Consensus 296 ~~~~~~~~~~~~~~~~~~~---~~----~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 368 (418)
T 2c81_A 296 PQVSRQTYYGYVFRFDPVK---FG----GLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEA 368 (418)
T ss_dssp TTEEECCCSEEEEEECGGG---TT----TCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHH
T ss_pred CCCcccccEEEEEEEcccc---cc----ccCHHHHHHHHHHcCCCCcccccccccccccCchhccccccccccccccccc
Confidence 55 332 22 6665300 00 026788999888766999 8887521
Q ss_pred ----CC--------CCcEEEEee--c-CHHHHHHHHHHHHHHHHhhC
Q 012095 435 ----GD--------DTCIRISYA--A-SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 435 ----~~--------~~~iRis~~--~-~~e~i~~~~~~l~~~l~~~~ 466 (471)
+. .+.|||++. . ++++++++++.|++++++++
T Consensus 369 ~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~~ 415 (418)
T 2c81_A 369 YWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKFC 415 (418)
T ss_dssp HHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTTC
T ss_pred ccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhhc
Confidence 00 147999997 3 78999999999999988754
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-32 Score=281.61 Aligned_cols=327 Identities=13% Similarity=0.098 Sum_probs=246.4
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcE--EEeCChHHHHHHHHHHhcCCC--------Ce
Q 012095 112 LIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQI--LVSNGAKQSILQAVLAVCSPG--------DE 181 (471)
Q Consensus 112 ~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i--~it~G~~~al~~~~~~l~~~g--------d~ 181 (471)
.+.+++..........|....+..++++.+++++.+.+|.+.+++++ ++|+|+++++..+++++.++| |+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~ 194 (514)
T 3mad_A 115 FLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPE 194 (514)
T ss_dssp HHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCE
T ss_pred HHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCe
Confidence 34444444333444556556677899999999999999976555788 999999999999999998776 99
Q ss_pred EEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC
Q 012095 182 VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 261 (471)
Q Consensus 182 Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~ 261 (471)
|+++.|+|.++...++..|++++.++++. ++.+|+++|++++++++++|++++|+||||.+.+ +++|.++|++|
T Consensus 195 Vi~~~~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~- 268 (514)
T 3mad_A 195 AVVPVSAHAAFDKAAQYFGIKLVRTPLDA--DYRADVAAMREAITPNTVVVAGSAPGYPHGVVDP---IPEIAALAAEH- 268 (514)
T ss_dssp EEEETTSCTHHHHHHHHHTCEEEEECBCT--TSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCC---HHHHHHHHHHH-
T ss_pred EEEeCccchHHHHHHHHcCCeeEEeeeCC--CCCCCHHHHHHHhccCCEEEEEeCCCCCCccccC---HHHHHHHHHHh-
Confidence 99999999999999999999999999874 5779999999999999999999999999999999 89999999999
Q ss_pred CeEEEEccCCCccccC-----CCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHh-------
Q 012095 262 RLLVLSDEIYEHIIYA-----PATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS------- 329 (471)
Q Consensus 262 ~~~ii~De~y~~~~~~-----~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~------- 329 (471)
|++||+||+|..+.+. +.....+. .. ..+..+++.|++|.++ +|.++||++++++.+........
T Consensus 269 ~i~livDea~~~~~~~~~~~~g~~~~~~~-~~-~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 345 (514)
T 3mad_A 269 GIGCHVDACLGGFILPWAERLGYPVPPFD-FR-LEGVTSVSADTHKYGY-GAKGTSVILYRRPDLLHYQYFIAADWPGGL 345 (514)
T ss_dssp TCEEEEECTTTTTTHHHHHHTTCCCCCCS-TT-STTCCEEEECTTTTTC-CCSSCEEEEESSHHHHTTTCEEESSCTTCS
T ss_pred CCeEEEecccccccchhHHhcCCCCCccc-cc-CCCCcEEEECchhccC-CCCCeEEEEEeCHHHhccccccccccCCCc
Confidence 9999999999987541 11111121 11 1345688999999974 78899999987765543211000
Q ss_pred ----cccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCccc
Q 012095 330 ----QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAE 405 (471)
Q Consensus 330 ----~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~ 405 (471)
....+.+.....++.+++... ...++++..++..++++++.+.|++++|+++..+..+ ++|+..+..
T Consensus 346 ~~~~~~~gs~~~~~~~a~~aal~~l--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~-~~~~~~~~~------ 416 (514)
T 3mad_A 346 YFSPTFAGSRPGALSATAWAAMLSL--GEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLW-VIAVASDEL------ 416 (514)
T ss_dssp EEESSSCSSCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCCSS-EEEEECSSS------
T ss_pred ccCCccCCCCchHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCCeE-EEEEeCCCC------
Confidence 001122222222333333210 1466788899999999999999999989988766655 466665432
Q ss_pred CCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec---CHHHHHHHHHHHHHHHHhhC
Q 012095 406 GFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 406 ~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~---~~e~i~~~~~~l~~~l~~~~ 466 (471)
+..++.+.|.++ ||.+ +|..| ++++|+++.. +++++++++++|++++++++
T Consensus 417 ------~~~~l~~~L~~~-Gi~v-~g~~~--~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~ 470 (514)
T 3mad_A 417 ------NIYQVMEEMAGR-GWRL-NGLHR--PPAFHVALTLRHTEPGVVDRFLADLQDAVAQVR 470 (514)
T ss_dssp ------CHHHHHHHHHTT-TCBC-EEETT--TTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHhc-CCEe-ccCCC--CCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 678899998876 9887 55433 5789999983 56899999999999998764
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-31 Score=271.32 Aligned_cols=331 Identities=14% Similarity=0.098 Sum_probs=238.4
Q ss_pred cCCCeEEcCCCCC--CCC-ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGEP--DFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~~--~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.+||+..|.+ .++ .++.+.+++.+++.+.. .|+. ....++++.+++.+.+.+| .++|++++|+++++.
T Consensus 74 ~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~-~~~~-~~~~~~~~~l~~~la~~~g----~~~v~~~~sGseA~~ 147 (439)
T 2oat_A 74 EGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLT-LTSR-AFYNNVLGEYEEYITKLFN----YHKVLPMNTGVEAGE 147 (439)
T ss_dssp TCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCS-CCCT-TSEESSHHHHHHHHHHHHT----CSEEEEESSHHHHHH
T ss_pred CCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcC-cccC-ccCCHHHHHHHHHHHHhcC----CCEEEEeCCHHHHHH
Confidence 5778999999875 455 68999999999986532 2211 1112334444444444444 479999999999999
Q ss_pred HHHHHhc---------CCC-CeEEEcCCCCCChH-HHHHHcC------------CEEEEecCCCCCCCcCCHHHHHhhhc
Q 012095 170 QAVLAVC---------SPG-DEVIIPAPFWVSYP-EMARIAD------------ATPVILPTRISENFLLDPKVLESKLT 226 (471)
Q Consensus 170 ~~~~~l~---------~~g-d~Vlv~~p~y~~~~-~~~~~~G------------~~~~~v~~~~~~~~~ld~e~l~~~l~ 226 (471)
.+++++. .+| |.|++.+|+|+++. ..+...| ..++.+|. .|+++|+++++
T Consensus 148 ~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~le~~l~ 220 (439)
T 2oat_A 148 TACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLPALERALQ 220 (439)
T ss_dssp HHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS-------SCHHHHHHHTT
T ss_pred HHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC-------CCHHHHHHHhC
Confidence 9998865 467 89999999998764 3444444 45666664 28999999994
Q ss_pred -cCCcEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCccc
Q 012095 227 -EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 304 (471)
Q Consensus 227 -~~~~~i~i~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 304 (471)
+++++|+++..+|+||. +++++++++|.++|++| |+++|+||+|.++.+.+... .+... +.... + .||||.+
T Consensus 221 ~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-gillI~DEv~~g~g~~g~~~-~~~~~-~~~~D-i--~t~sK~l 294 (439)
T 2oat_A 221 DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRH-QVLFIADEIQTGLARTGRWL-AVDYE-NVRPD-I--VLLGKAL 294 (439)
T ss_dssp STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSS-GGGGG-TCCCS-E--EEECGGG
T ss_pred CCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCccCCcch-hHHHh-CCCCc-E--EEecccc
Confidence 56666655544678996 57999999999999999 99999999998765444211 11111 11112 2 3899999
Q ss_pred Cccc-hhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCee
Q 012095 305 AMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 383 (471)
Q Consensus 305 g~~G-~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~ 383 (471)
+ +| +|+||+++++++++.+.......+++.+++++.++.++|+. .++ ++..++++++++++.+.|+++ ++.+
T Consensus 295 ~-~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~---~~~--~~~~~~~~~~~~~l~~~L~~l-~~~~ 367 (439)
T 2oat_A 295 S-GGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEV---LEE--ENLAENADKLGIILRNELMKL-PSDV 367 (439)
T ss_dssp G-TTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHH---HHH--TTHHHHHHHHHHHHHHHHTTS-CTTT
T ss_pred c-CCCCCeEEEEECHHHHhccCCCCcccCCCcCHHHHHHHHHHHHH---Hhh--hhHHHHHHHHHHHHHHHHHHh-cCCC
Confidence 8 78 99999999999888776543455677899999999888874 111 256778888999999999886 4432
Q ss_pred ---eCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHH
Q 012095 384 ---SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERI 458 (471)
Q Consensus 384 ---~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~i~~~~~~l 458 (471)
.++ .|.++|+.+++..+ .+..++++.|+++ ||.+.|+. ++++|+++. .+++++++++++|
T Consensus 368 ~~~~~~-~g~~~~v~l~~~~~---------~~~~~l~~~l~~~-Gv~v~~~~----~~~iRi~~~~~~t~e~i~~~l~~l 432 (439)
T 2oat_A 368 VTAVRG-KGLLNAIVIKETKD---------WDAWKVCLRLRDN-GLLAKPTH----GDIIRFAPPLVIKEDELRESIEII 432 (439)
T ss_dssp EEEEEE-ETTEEEEEECCCSS---------CCHHHHHHHHHHT-TEECCBSS----SSEEEECCCTTCCHHHHHHHHHHH
T ss_pred cEEEEe-eeeEEEEEEecCcc---------HHHHHHHHHHHHC-CeEEecCC----CCEEEEECccCCCHHHHHHHHHHH
Confidence 233 45557888864200 1477899998876 99999852 578999776 4999999999999
Q ss_pred HHHHHh
Q 012095 459 KKGLLT 464 (471)
Q Consensus 459 ~~~l~~ 464 (471)
++++++
T Consensus 433 ~~~l~~ 438 (439)
T 2oat_A 433 NKTILS 438 (439)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999875
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=278.61 Aligned_cols=351 Identities=14% Similarity=0.134 Sum_probs=228.3
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|++++|+..|. ..++. |+.+.+++.+++.+....+.+.....+|++.++++ ++ .+++|++|+|+++++.
T Consensus 53 ~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~----~~---~~~~v~~~~sGsea~~ 125 (434)
T 3l44_A 53 DGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLYGTPTALEVKFAKMLKEA----MP---ALDKVRFVNSGTEAVM 125 (434)
T ss_dssp TCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCSCCSSCCHHHHHHHHHHHHH----CT---TCSEEEEESSHHHHHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHh----CC---CCCEEEEeCchHHHHH
Confidence 578899999887 44553 78999999998876543233544445555555554 43 5689999999999999
Q ss_pred HHHHHhcC--CCCeEEEcCCCCCChHHHHHHcCCE-EEEecCCCCCCCc------------CCHHHHHhhhcc---CCcE
Q 012095 170 QAVLAVCS--PGDEVIIPAPFWVSYPEMARIADAT-PVILPTRISENFL------------LDPKVLESKLTE---KSRL 231 (471)
Q Consensus 170 ~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~G~~-~~~v~~~~~~~~~------------ld~e~l~~~l~~---~~~~ 231 (471)
.+++.+.. ++|.|++.+|+|+++...+...+.. ...+......++. -|+++|++++++ ++++
T Consensus 126 ~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~ 205 (434)
T 3l44_A 126 TTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAA 205 (434)
T ss_dssp HHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEE
T ss_pred HHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEE
Confidence 99987764 6799999999999876544433322 1111111001100 189999998863 4445
Q ss_pred EEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCc-cccccCCCCCCceEEEecCCcccCccch
Q 012095 232 LILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWERTLTVNGFSKAFAMTGW 309 (471)
Q Consensus 232 i~i~~p~NPtG~~~-~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~~~~~~~i~~~S~SK~~g~~G~ 309 (471)
|+++.++|++|.+. +++++++|.++|++| |++||+||+|.+| ..+... ........ + +.||||.++ +|+
T Consensus 206 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-~illI~DEv~~g~-~~g~~~~~~~~~~~~--d----i~t~sK~~~-~G~ 276 (434)
T 3l44_A 206 ILVEPIVGNFGIVEPKPGFLEKVNELVHEA-GALVIYDEVITAF-RFMYGGAQDLLGVTP--D----LTALGKVIG-GGL 276 (434)
T ss_dssp EEECSSBCTTSCBCCCTTHHHHHHHHHHTT-TCEEEEECTTTTT-TSSSSCHHHHHTCCC--S----EEEEEGGGG-TTS
T ss_pred EEEcCCCCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccce-eccccHHHHHcCCCC--C----eeehhhhhc-CCc
Confidence 54554456666655 899999999999999 9999999999987 443211 11122211 1 558999998 899
Q ss_pred hheeeEcCHHHHHHHHHH---HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC
Q 012095 310 RLGYIAGPKHFVAACNKI---QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (471)
Q Consensus 310 R~G~v~~~~~~i~~l~~~---~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p 386 (471)
|+||+++++++++.+... ....+++.+++++.++.++|+.... ++.+++.++..+..++.+.+.+.+.+.+....+
T Consensus 277 ~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 355 (434)
T 3l44_A 277 PIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ-EGLYEKLDELGATLEKGILEQAAKHNIDITLNR 355 (434)
T ss_dssp SCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 999999999999887652 2334677899999999999874221 333444444333444444443333432333444
Q ss_pred CcceEEeEecCCccCCccc--CCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012095 387 QGAFYLFIDFSTYYGSEAE--GFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 387 ~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~~ 464 (471)
.|.| +++.+......... .........++++.|+++ ||.+.|+. .+++|+++..+++++++++++|++++++
T Consensus 356 ~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----~~~~rl~~~~t~e~i~~~l~~l~~~l~~ 429 (434)
T 3l44_A 356 LKGA-LTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQE-GVNLAPSK----YEAWFLTTEHTKEDIEYTIEAVGRAFAA 429 (434)
T ss_dssp ETTE-EEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHT-TEECCSST----TCCEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eccE-EEEEEecCcccchhhccccCHHHHHHHHHHHHHC-CeEEeecC----CCcEEEecccCHHHHHHHHHHHHHHHHH
Confidence 4454 56665321000000 000000236788888876 99999975 3578998878999999999999999987
Q ss_pred hC
Q 012095 465 LR 466 (471)
Q Consensus 465 ~~ 466 (471)
++
T Consensus 430 ~~ 431 (434)
T 3l44_A 430 LA 431 (434)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-31 Score=275.63 Aligned_cols=332 Identities=12% Similarity=0.077 Sum_probs=253.6
Q ss_pred CChHHHHHHHHHHHHc----CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcC-----C
Q 012095 108 DTPVLIAEAGINAIRE----GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS-----P 178 (471)
Q Consensus 108 ~~p~~v~~a~~~~~~~----~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~-----~ 178 (471)
..++.+.+++.+++.. +..+|...+|..++++.+++++.+.+|.+.+++++++|+|+++++..+++++++ +
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~ 154 (497)
T 3mc6_A 75 HGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHR 154 (497)
T ss_dssp CCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcC
Confidence 3457788888877765 345566667888999999999999999766678999999999999999998865 5
Q ss_pred C---CeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHH
Q 012095 179 G---DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR 255 (471)
Q Consensus 179 g---d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~ 255 (471)
| |+|+++.|+|.++...++..|++++.+|++. +++.+|+++|++++++++++|++++|+||||.+.+ +++|.+
T Consensus 155 g~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~---l~~i~~ 230 (497)
T 3mc6_A 155 GITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDP-TTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADD---IEGLGK 230 (497)
T ss_dssp CCSSCEEEEETTSCHHHHHHHHHSCCEEEEECBCT-TTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCS---CTTTTT
T ss_pred CCCCceEEEeCCccHHHHHHHHHcCCeEEEEecCc-ccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCC---HHHHHH
Confidence 6 8999999999999999999999999999874 36789999999999999999999999999999999 889999
Q ss_pred HHHhCCCeEEEEccCCCccccC-----CCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHh-
Q 012095 256 IVAKHPRLLVLSDEIYEHIIYA-----PATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS- 329 (471)
Q Consensus 256 l~~~~~~~~ii~De~y~~~~~~-----~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~- 329 (471)
+|++| |+++|+|++|..+... +....+..... ..+..+++.|++|.++ +|.++||++++++.+........
T Consensus 231 la~~~-g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~-~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~~ 307 (497)
T 3mc6_A 231 IAQKY-KLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFR-VPGVTSISCDTHKYGF-APKGSSVIMYRNSDLRMHQYYVNP 307 (497)
T ss_dssp HHHHT-TCCEEEETTTTHHHHGGGTTTTCCSCCCCSTT-STTCCEEEEETTTTTC-CCSSCEEEECSSHHHHTTTSCCBT
T ss_pred HHHHh-CCEEEEECcchhhhhhhhhhhcccCCcccccc-CCCCcEEEECchhhcC-CCCCceeEEecCHHHHhhhhcccc
Confidence 99999 9999999999865321 11111011111 1345688899999874 78899999988766554321110
Q ss_pred cccC----CC------C---hHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC-CCCCeee-CCCcceEEeE
Q 012095 330 QFTS----GA------S---SISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMS-EPQGAFYLFI 394 (471)
Q Consensus 330 ~~~~----~~------~---~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~g~~~~-~p~~g~~~~~ 394 (471)
.+.. .+ + ..++.++...+. ..++++..++..++++++.+.|.+ ++|+++. +|.++++ ++
T Consensus 308 ~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~-----~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~~v-~~ 381 (497)
T 3mc6_A 308 AWTGGLYGSPTLAGSRPGAIVVGCWATMVNMG-----ENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVI-SF 381 (497)
T ss_dssp TCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSSEE-EE
T ss_pred cccCCCcCCcCcccCCcchhHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCeeEE-EE
Confidence 0000 00 1 334555555554 456778888899999999999999 6899886 4555654 44
Q ss_pred ecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec-CHHHHHHHHHHHHHHHHhhCCC
Q 012095 395 DFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGLLTLRPG 468 (471)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~-~~e~i~~~~~~l~~~l~~~~~~ 468 (471)
..+.. +..++.+.|.++ ||.+.++.. +..+|+++.. +++++++++++|++++++++..
T Consensus 382 ~~~~~------------~~~~l~~~L~~~-Gi~v~~~~~---~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~~~~ 440 (497)
T 3mc6_A 382 SSKTL------------NIHELSDRLSKK-GWHFNALQK---PVALHMAFTRLSAHVVDEICDILRTTVQELKSE 440 (497)
T ss_dssp ECTTT------------THHHHHHHHHTT-TCBCEECCS---SCCEEEECCTTTTCTHHHHHHHHHHHHHHHTCC
T ss_pred eCCCC------------CHHHHHHHHHhC-CEEEecCCC---CCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 54422 678899988876 998877543 3578999887 8899999999999999877543
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-31 Score=271.55 Aligned_cols=333 Identities=14% Similarity=0.094 Sum_probs=232.1
Q ss_pred cCCCeEEcCCCC--CCCC-ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.+||+..|. .+++ .++.+.+++.+++.+.. .|+. ....+++..+++.+.+.+| .++|++++|+++++.
T Consensus 63 ~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~-~~~~-~~~~~~~~~l~~~la~~~g----~~~v~~~~sGseA~~ 136 (433)
T 1z7d_A 63 NDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLT-ICSR-AFFSVPLGICERYLTNLLG----YDKVLMMNTGAEANE 136 (433)
T ss_dssp TCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCS-CCCT-TSEEHHHHHHHHHHHHHHT----CSEEEEESSHHHHHH
T ss_pred CCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCC-CccC-CcCCHHHHHHHHHHHhhcC----CCeEEEeCCHHHHHH
Confidence 577899999875 4666 68999999999986532 2221 1234566666666666665 479999999999999
Q ss_pred HHHHHhc---------CCC-CeEEEcCCCCCChHH-HHHHcC------------CEEEEecCCCCCCCcCCHHHHHhhh-
Q 012095 170 QAVLAVC---------SPG-DEVIIPAPFWVSYPE-MARIAD------------ATPVILPTRISENFLLDPKVLESKL- 225 (471)
Q Consensus 170 ~~~~~l~---------~~g-d~Vlv~~p~y~~~~~-~~~~~G------------~~~~~v~~~~~~~~~ld~e~l~~~l- 225 (471)
.+++++. .+| |.|++.+|+|+++.. .+...| ..++.+|. .|+++|++++
T Consensus 137 ~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~le~~l~ 209 (433)
T 1z7d_A 137 TAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY-------DDLEALEEELK 209 (433)
T ss_dssp HHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT-------TCHHHHHHHHT
T ss_pred HHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC-------CCHHHHHHHhC
Confidence 9988753 478 999999999987654 333333 23444543 2899999999
Q ss_pred ccCCcEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCccc
Q 012095 226 TEKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 304 (471)
Q Consensus 226 ~~~~~~i~i~~p~NPtG~~-~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 304 (471)
++++++|+++..+|+||.. ++++.+++|.++|++| |++||+||+|.++.+.+.. ..+.... .... +.||||.+
T Consensus 210 ~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~~g~g~~g~~-~~~~~~~-~~~d---i~t~sK~l 283 (433)
T 1z7d_A 210 DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKY-NVLFVADEVQTGLGRTGKL-LCVHHYN-VKPD---VILLGKAL 283 (433)
T ss_dssp STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSS-SGGGGGT-CCCS---EEEECGGG
T ss_pred CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHc-CCEEEEecCccCCCcCCcc-hhhHhcC-CCCC---EEEECccc
Confidence 5667766655446789974 7888999999999999 9999999999876444421 1111111 1112 23899999
Q ss_pred Cccc-hhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCC----C
Q 012095 305 AMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----E 379 (471)
Q Consensus 305 g~~G-~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~----~ 379 (471)
| +| +|+||+++++++++.+.......+++.+++++.++.++|+.. ++ +++.++++++++++.+.|+++ +
T Consensus 284 ~-~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~---~~--~~~~~~~~~~~~~l~~~L~~l~~~~~ 357 (433)
T 1z7d_A 284 S-GGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVL---IN--EKLCENAEKLGGPFLENLKRELKDSK 357 (433)
T ss_dssp G-TTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHH---HH--TTHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred c-CCCCCeEEEEECHHHHhhhccccccccCCCCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9 89 999999999999887765434556778999999998888741 11 245556666777777776643 3
Q ss_pred CCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHH
Q 012095 380 GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVER 457 (471)
Q Consensus 380 g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~ 457 (471)
.+....+. |.++|+.++... .+..++++.|+++ ||.+.|+. .+++|++++. +++++++++++
T Consensus 358 ~~~~~~~~-g~~~~i~~~~~~----------~~~~~~~~~l~~~-Gv~v~~~~----~~~iRi~~~~~~t~e~i~~~l~~ 421 (433)
T 1z7d_A 358 IVRDVRGK-GLLCAIEFKNEL----------VNVLDICLKLKEN-GLITRDVH----DKTIRLTPPLCITKEQLDECTEI 421 (433)
T ss_dssp TEEEEEEE-TTEEEEEECTTT----------CCHHHHHHHHHHT-TEECCEET----TTEEEECCCTTCCHHHHHHHHHH
T ss_pred CeEEEEee-eeEEEEEEccCh----------hHHHHHHHHHHHC-CeEEecCC----CCEEEEECCcCCCHHHHHHHHHH
Confidence 22333344 455788886420 1577899998875 99999852 5789998764 99999999999
Q ss_pred HHHHHHhhC
Q 012095 458 IKKGLLTLR 466 (471)
Q Consensus 458 l~~~l~~~~ 466 (471)
|+++++++.
T Consensus 422 l~~~l~~~~ 430 (433)
T 1z7d_A 422 IVKTVKFFD 430 (433)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999998764
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=274.74 Aligned_cols=352 Identities=11% Similarity=0.045 Sum_probs=237.4
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.+||+..|. ..++. ++.+.+++.+++.+. ..|.+..+..+.++++++++.+.++. ..++|++|+|+++++.
T Consensus 42 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~~--~~~~v~~~~sGseA~~ 118 (448)
T 3dod_A 42 NGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKI-AHSTLLGMTNVPATQLAETLIDISPK--KLTRVFYSDSGAEAME 118 (448)
T ss_dssp TSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTC-SCCCCSSSEEHHHHHHHHHHHHHSCT--TEEEEEEESSHHHHHH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhc-cCccccccCCHHHHHHHHHHHHhCCC--CCCEEEEeCchHHHHH
Confidence 577899999875 34443 789999999998764 33445567778899999999888753 4579999999999999
Q ss_pred HHHHHhcC----CC----CeEEEcCCCCCChHHHHHHcCC-------------EEEEecCCCCCCCcC-----------C
Q 012095 170 QAVLAVCS----PG----DEVIIPAPFWVSYPEMARIADA-------------TPVILPTRISENFLL-----------D 217 (471)
Q Consensus 170 ~~~~~l~~----~g----d~Vlv~~p~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~l-----------d 217 (471)
.+++++.. +| |.|++.+|+|+++...+...+. .+..++.. +.|.. |
T Consensus 119 ~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d 196 (448)
T 3dod_A 119 IALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIP--YVYRSESGDPDECRDQC 196 (448)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCC--CCTTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCC--ccccCCccchhhhhHHH
Confidence 99998865 44 9999999999887755444332 22333332 22222 4
Q ss_pred HHHHHhhhc---cCCcEEEEcCCC-CCcc-cCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCC
Q 012095 218 PKVLESKLT---EKSRLLILCSPS-NPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292 (471)
Q Consensus 218 ~e~l~~~l~---~~~~~i~i~~p~-NPtG-~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 292 (471)
+++|+++++ +++++|+++.++ |++| .+.+++++++|.++|++| |++||+||+|.++.+.+... ......
T Consensus 197 ~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~-~~~lI~DEv~~g~g~~g~~~-a~~~~~---- 270 (448)
T 3dod_A 197 LRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTY-DVLMIVDEVATGFGRTGKMF-ACEHEN---- 270 (448)
T ss_dssp HHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSS-GGGGGT----
T ss_pred HHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHh-CCEEEEeccccCCCcccchh-hhhhcC----
Confidence 888999886 345556565555 7887 567888999999999999 99999999999875544321 111111
Q ss_pred ceEEEecCCcccCccch-hheeeEcCHHHHHHHHH-------HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHH
Q 012095 293 RTLTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNK-------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364 (471)
Q Consensus 293 ~~i~~~S~SK~~g~~G~-R~G~v~~~~~~i~~l~~-------~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~ 364 (471)
....+.+|||.++ .|+ |+||+++++++++.+.. .....+++.+++++.++.++|+.... +++++..++..
T Consensus 271 ~~~di~t~sK~l~-~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~ 348 (448)
T 3dod_A 271 VQPDLMAAGKGIT-GGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFES-ENIVEQVAEKS 348 (448)
T ss_dssp CCCSEEEECGGGG-TTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHH
T ss_pred CCCCEEEeccccc-CCcCceEEEEECHHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 1112447899998 695 99999999999998865 44446678899999999999974211 24455556666
Q ss_pred HHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCC-CCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEE
Q 012095 365 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI-ENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 443 (471)
Q Consensus 365 ~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis 443 (471)
+..++.+.+ +.+++.+....+.|. ++|+.++...... ..+... ....++++.|+++ ||.+.|+. +++||+
T Consensus 349 ~~~~~~l~~-l~~~~~~~~~~~~g~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~-----~~iRi~ 419 (448)
T 3dod_A 349 KKLHFLLQD-LHALPHVGDIRQLGF-MCGAELVRSKETK-EPYPADRRIGYKVSLKMREL-GMLTRPLG-----DVIAFL 419 (448)
T ss_dssp HHHHHHHHH-HTTSTTEEEEEEETT-EEEEEECSBTTTT-BCCCGGGCHHHHHHHHHHHT-TEECCEET-----TEEEEC
T ss_pred HHHHHHHHH-HhcCCCeEEEEeeeE-EEEEEEccCcccc-cccchhhHHHHHHHHHHHHC-CcEEeccC-----CEEEEE
Confidence 666666666 666654544444444 5777776431100 000000 0036788988876 99999872 789996
Q ss_pred ee--cCHHHHHHHHHHHHHHHHhhC
Q 012095 444 YA--ASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 444 ~~--~~~e~i~~~~~~l~~~l~~~~ 466 (471)
+. .+++++++++++|+++++++.
T Consensus 420 ~~~~~t~e~i~~~l~~l~~~l~~~~ 444 (448)
T 3dod_A 420 PPLASTAEELSEMVAIMKQAIHEVT 444 (448)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 54 599999999999999998764
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-31 Score=264.31 Aligned_cols=322 Identities=15% Similarity=0.181 Sum_probs=240.9
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 175 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l 175 (471)
++|+|+. |.+ |+.+++++.+++.+.. |.+..+..++++.++++++ .+++++|+|+++++..+++++
T Consensus 9 ~~i~~~~--p~~--~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~la~~~~--------~~~~~~~~~gt~al~~~~~~~ 74 (393)
T 1mdo_A 9 DFLPFSR--PAM--GAEELAAVKTVLDSGW--ITTGPKNQELEAAFCRLTG--------NQYAVAVSSATAGMHIALMAL 74 (393)
T ss_dssp CCBCSCC--CCC--CHHHHHHHHHHHHHTC--CSSSHHHHHHHHHHHHHHC--------CSEEEEESCHHHHHHHHHHHT
T ss_pred cccccCC--CCC--CHHHHHHHHHHHhcCC--cCCChHHHHHHHHHHHHhC--------CCcEEEecChHHHHHHHHHHc
Confidence 3677776 554 4677889988887643 4466788999999999872 248999999999999999999
Q ss_pred -cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHH
Q 012095 176 -CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 254 (471)
Q Consensus 176 -~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~ 254 (471)
+++||+|++++|+|+++...++..|++++.+++++ +++.+|++++++++++++++|+++ ||||.+.+ +++|.
T Consensus 75 ~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~v~~~---~~~G~~~~---~~~i~ 147 (393)
T 1mdo_A 75 GIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDR-DTLMVTPEHIEAAITPQTKAIIPV---HYAGAPAD---LDAIY 147 (393)
T ss_dssp TCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCT-TTCCBCHHHHHHHCCTTEEEECCB---CGGGCCCC---HHHHH
T ss_pred CCCCCCEEEeCCCccHhHHHHHHHCCCEEEEEeccC-CcCCCCHHHHHHhcCCCceEEEEe---CCCCCcCC---HHHHH
Confidence 89999999999999999999999999999999875 357799999999998888888875 48999988 89999
Q ss_pred HHHHhCCCeEEEEccCCCcc-ccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcC-HHHHHHHHHHHhccc
Q 012095 255 RIVAKHPRLLVLSDEIYEHI-IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFT 332 (471)
Q Consensus 255 ~l~~~~~~~~ii~De~y~~~-~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~-~~~i~~l~~~~~~~~ 332 (471)
++|+++ +++||+|++|..+ .+.+. . +. . +++++.||||..+++|.|+||++++ +++++.+........
T Consensus 148 ~l~~~~-~~~li~D~a~~~g~~~~~~---~---~~--~-~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~~~l~~~~~~~~ 217 (393)
T 1mdo_A 148 ALGERY-GIPVIEDAAHATGTSYKGR---H---IG--A-RGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGL 217 (393)
T ss_dssp HHHHHH-TCCBCEECTTCTTCEETTE---E---TT--S-SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTE
T ss_pred HHHHHc-CCeEEEECccccCCeECCe---e---cC--C-CCeEEEeCCCCCccccccceEEEeCCHHHHHHHHHHHhcCC
Confidence 999999 9999999999963 33321 1 11 0 5689999993333455699999996 789988876543211
Q ss_pred ------------------------CCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC-C-
Q 012095 333 ------------------------SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-P- 386 (471)
Q Consensus 333 ------------------------~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~-p- 386 (471)
+..+.+...++...+. .+++..++.+++++++.+.|.+++ +++.. +
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~-------~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~ 289 (393)
T 1mdo_A 218 GVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQ-------KLDALNARRAAIAAQYHQAMADLP-FQPLSLPS 289 (393)
T ss_dssp ECC-----------CCEESSCCCBCCCCHHHHHHHHHHHH-------THHHHHHHHHHHHHHHHHHHHTSS-CEECCCCS
T ss_pred cccchhhhcccccccccccccCccCCCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcCC-cccccCCC
Confidence 1134444444334333 245556666678888899998884 76542 2
Q ss_pred ----CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC--------------CC-------CCcEE
Q 012095 387 ----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF--------------GD-------DTCIR 441 (471)
Q Consensus 387 ----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f--------------~~-------~~~iR 441 (471)
.+++++|+.++... .+ .+..++.+.|.++ ||.+.+|..+ .. ..++|
T Consensus 290 ~~~~~~~~~~~v~~~~~~----~~----~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR 360 (393)
T 1mdo_A 290 WEHIHAWHLFIIRVDEAR----CG----ITRDALMASLKTK-GIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICS 360 (393)
T ss_dssp SCEECCCSCEEEECCHHH----HS----SCHHHHHHHHHHT-TBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEE
T ss_pred CCCCceeEEEEEEecccc----cc----cCHHHHHHHHHhC-CCCcccccCccccChhhhccCCccCChhHHHHHhCEEE
Confidence 35567888887300 00 1678899988775 9999998754 11 24799
Q ss_pred EEeec--CHHHHHHHHHHHHHHHHhh
Q 012095 442 ISYAA--SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 442 is~~~--~~e~i~~~~~~l~~~l~~~ 465 (471)
+++.. ++++++++++.|+++++..
T Consensus 361 i~~~~~~t~~~i~~~~~~l~~~~~~~ 386 (393)
T 1mdo_A 361 LPLFPDMTESDFDRVITALHQIAGQG 386 (393)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 99985 9999999999999988654
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=283.11 Aligned_cols=370 Identities=15% Similarity=0.147 Sum_probs=249.7
Q ss_pred ccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCC------CCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHH
Q 012095 70 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP------DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICH 143 (471)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~------~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~ 143 (471)
.+++.++++++..+......+...|.++++|..|.+ ++++ +.+.+++.+++..+...|++..+..+|++++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ylD~~~~~~~-~~v~~a~~~~l~~~~~~y~~~~~~~~l~~~la~ 85 (467)
T 2oqx_A 7 FRIRVIEPVKRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGT-GAVTQSMQAAMMRGDEAYSGSRSYYALAESVKN 85 (467)
T ss_dssp SCCCCCCCCCCCCHHHHHHHHHHTTSCGGGSCGGGCSEECSCCSSC-SCCCHHHHHHTTSCCCCSSSCHHHHHHHHHHHH
T ss_pred hheeeecccccccHHHHHHHHHHcCCCceeccCCCeeEecccCCCc-HHHHHHHHHHhccCcceeccCchhHHHHHHHHH
Confidence 355666666665555566666667777777777664 3333 677788888776666679888888999999999
Q ss_pred HHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCC-----C----CeEEEcCCCCCChHHHHHHcCCEEEEecC----CC
Q 012095 144 KLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSP-----G----DEVIIPAPFWVSYPEMARIADATPVILPT----RI 210 (471)
Q Consensus 144 ~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~-----g----d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~----~~ 210 (471)
++ | .+++++|+|+++++..++++++++ | |+|++..+.|.++.......|+.++.... +.
T Consensus 86 ~~----~----~~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~~~~~~~~~~~~~~~~~~~~ 157 (467)
T 2oqx_A 86 IF----G----YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDT 157 (467)
T ss_dssp HH----C----CSEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCT
T ss_pred Hh----C----cCcEEEcCCcHHHHHHHHHHHhccccccCCCCccceEEecccccccchhhhhccCcceeeccccccccC
Confidence 87 2 368999999999999999999888 8 99888754445555666777887765422 11
Q ss_pred C----CCCcCCHHHHHhhhc----cCCcEEEEcCCCCCc-ccCCCHHHHHHHHHHHHhCCCeEEEEccCCCc--------
Q 012095 211 S----ENFLLDPKVLESKLT----EKSRLLILCSPSNPT-GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-------- 273 (471)
Q Consensus 211 ~----~~~~ld~e~l~~~l~----~~~~~i~i~~p~NPt-G~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~-------- 273 (471)
+ .++.+|+++|+++++ +++++|++++|+||| |.+++.+++++|+++|++| |++||+|+++..
T Consensus 158 ~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~-gi~li~D~a~~~e~~~~~~~ 236 (467)
T 2oqx_A 158 GVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKY-DIPVVMDSARFAENAYFIKQ 236 (467)
T ss_dssp TSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHT-TCCEEEECTTHHHHHHHHHH
T ss_pred CCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHc-CCEEEEEchhhhhhhhhccc
Confidence 1 235689999999997 378999999999998 8999999999999999999 999999966543
Q ss_pred --cccCCCCcccccc-CCCCCCceEEEecCCcccCcc-chhheeeEcCHH-HHHHHHHHHhc---c----cCC-CChHHH
Q 012095 274 --IIYAPATHTSFAS-LPGMWERTLTVNGFSKAFAMT-GWRLGYIAGPKH-FVAACNKIQSQ---F----TSG-ASSISQ 340 (471)
Q Consensus 274 --~~~~~~~~~~~~~-~~~~~~~~i~~~S~SK~~g~~-G~R~G~v~~~~~-~i~~l~~~~~~---~----~~~-~~~~~q 340 (471)
..+.+.....+.. .....+ +++.|+||.+|++ | ||++++++ +++.+.++... . ..+ .+....
T Consensus 237 ~~~~~~g~~~~~~~~~~~~~~d--~~~~s~sK~~g~~~G---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (467)
T 2oqx_A 237 REAEYKDWTIEQITRETYKYAD--MLAMSAKKDAMVPMG---GLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAM 311 (467)
T ss_dssp HCGGGTTSCHHHHHHHHGGGCS--EEEEESSSTTCCSSC---EEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHH
T ss_pred ccccccCccHHHHhhhhhccCC--eEEEecccccCCCCc---eEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHH
Confidence 1232321111110 001112 4578999999877 5 88888877 55554443321 1 111 122222
Q ss_pred HHHHHHHhccCCChHHH-HHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCcc-CCcccCCCCCCCHHHHHH
Q 012095 341 KAGVAALGLGYAGGEVV-SKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYY-GSEAEGFGKIENSESLCR 418 (471)
Q Consensus 341 ~aa~~~L~~~~~~~~~~-~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~ 418 (471)
.+....+. +++ ++..+++.++++++.+.|.++ |+.+. |.+++++|++++... +..... .+...+++
T Consensus 312 ~al~~~l~------~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~ 379 (467)
T 2oqx_A 312 ERLAVGLY------DGMNLDWLAYRIAQVQYLVDGLEEI-GVVCQ-QAGGHAAFVDAGKLLPHIPADQ----FPAQALAC 379 (467)
T ss_dssp HHHHHHHH------HTTCHHHHHHHHHHHHHHHHHHHHT-TCCEE-EECSSCEEEEHHHHSTTSCGGG----CHHHHHHH
T ss_pred HHHHHhhH------hhhhHHHHHHHHHHHHHHHHHHHHC-CCeee-cCCceEEEEechhhcccCCccc----ccHHHHHH
Confidence 11112222 122 123445567888899999888 88887 788889999885210 000000 01456688
Q ss_pred HHHHcCCEEEECCCCC--C-----------CCCcEEEEee---cCHHHHHHHHHHHHHHHHhhC
Q 012095 419 YLLDKAQVALVPGDAF--G-----------DDTCIRISYA---ASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 419 ~Ll~~~gV~v~pg~~f--~-----------~~~~iRis~~---~~~e~i~~~~~~l~~~l~~~~ 466 (471)
.|+++.||.+.||+.| + ..+++|++++ .+++++++++++|++++++..
T Consensus 380 ~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~~ 443 (467)
T 2oqx_A 380 ELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAA 443 (467)
T ss_dssp HHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 8845569999995532 2 1379999999 689999999999999997654
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-31 Score=268.84 Aligned_cols=325 Identities=12% Similarity=0.131 Sum_probs=239.6
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCC----CCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP----NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 171 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~----~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~ 171 (471)
+.+.|..+.+. ++|+.+.+++.+++.+....+.. ..|..+..+.+.+.+.+.+|. ++++|++|+|+++++..+
T Consensus 28 ~~~yld~~~~~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~~~~v~~~~g~t~al~~a 104 (416)
T 1qz9_A 28 GVIYLDGNSLG-ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGA--RDGEVVVTDTTSINLFKV 104 (416)
T ss_dssp TCEECCTTTSC-CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTC--CTTSEEECSCHHHHHHHH
T ss_pred CeEeecCCCcC-CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCC--CcccEEEeCChhHHHHHH
Confidence 47888888876 56778899999988753222211 113334445555555555664 568999999999999988
Q ss_pred HHHhc------CCCCe-EEEcCCCCCChHHHH----HHc--CCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCC
Q 012095 172 VLAVC------SPGDE-VIIPAPFWVSYPEMA----RIA--DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 238 (471)
Q Consensus 172 ~~~l~------~~gd~-Vlv~~p~y~~~~~~~----~~~--G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~ 238 (471)
+++++ ++||+ |+++.++|+++...+ +.. |++++.+++ +++|++++++++++|++++|+
T Consensus 105 l~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------~~~l~~~i~~~~~~v~~~~~~ 175 (416)
T 1qz9_A 105 LSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS---------PEELPQAIDQDTAVVMLTHVN 175 (416)
T ss_dssp HHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS---------GGGHHHHCSTTEEEEEEESBC
T ss_pred HHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc---------HHHHHHHhCCCceEEEEeccc
Confidence 88876 89997 455566787655432 334 999998875 788999998889999999999
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhh-eeeEcC
Q 012095 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGP 317 (471)
Q Consensus 239 NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~-G~v~~~ 317 (471)
||||.+++ +++|.++|++| |++||+||+|... .....+.. .+..+++.|++|.++ +|.++ ||++++
T Consensus 176 nptG~~~~---l~~i~~l~~~~-~~~li~D~a~~~g----~~~~~~~~----~~~d~~~~s~~K~l~-~g~~~~g~l~~~ 242 (416)
T 1qz9_A 176 YKTGYMHD---MQALTALSHEC-GALAIWDLAHSAG----AVPVDLHQ----AGADYAIGCTYKYLN-GGPGSQAFVWVS 242 (416)
T ss_dssp TTTCBBCC---HHHHHHHHHHH-TCEEEEECTTTTT----TSCCCHHH----HTCSEEEECSSSTTC-CCTTCCCEEEEC
T ss_pred cCcccccC---HHHHHHHHHHc-CCEEEEEcccccc----CcCCChhh----cCCCEEEecCcccCC-CCCCCeEEEEEC
Confidence 99999999 89999999999 9999999999742 11111211 134588999999985 78888 999999
Q ss_pred HHHHHHHHHHH-----------------------hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHH
Q 012095 318 KHFVAACNKIQ-----------------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 374 (471)
Q Consensus 318 ~~~i~~l~~~~-----------------------~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~ 374 (471)
+++++.+.... .....+++...+.++.++|+.. ..+++++++++++++++++.+.
T Consensus 243 ~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~ 320 (416)
T 1qz9_A 243 PQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVF--AQTDMASLRRKSLALTDLFIEL 320 (416)
T ss_dssp TTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHH
Confidence 98876654321 1112346777777777777642 1245788899999999999999
Q ss_pred hcCC-C--CCeeeCCC----cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec-
Q 012095 375 FGEL-E--GVKMSEPQ----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA- 446 (471)
Q Consensus 375 L~~~-~--g~~~~~p~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~- 446 (471)
|.++ + |+.+..+. .+.++|++++ +..++.+.|.++ ||.+.. ..++++|++++.
T Consensus 321 L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~l~~~-gi~~~~----~~~~~lRis~~~~ 381 (416)
T 1qz9_A 321 VEQRCAAHELTLVTPREHAKRGSHVSFEHP--------------EGYAVIQALIDR-GVIGDY----REPRIMRFGFTPL 381 (416)
T ss_dssp HHHHHTTSCCEECSCSSGGGBCSEEEEECT--------------THHHHHHHHHTT-TEECEE----ETTTEEEEECCTT
T ss_pred HHhhccCCCeEEeCCCCHHHcCCEEEEecC--------------CHHHHHHHHHhC-CcEecc----CCCCeEEEeCccc
Confidence 9885 6 88887664 2445788875 356888888765 998753 235799999973
Q ss_pred --CHHHHHHHHHHHHHHHHhhC
Q 012095 447 --SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 447 --~~e~i~~~~~~l~~~l~~~~ 466 (471)
+++++++++++|++++++..
T Consensus 382 ~~t~~~i~~~~~~l~~~~~~~~ 403 (416)
T 1qz9_A 382 YTTFTEVWDAVQILGEILDRKT 403 (416)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHhccc
Confidence 99999999999999998654
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.5e-31 Score=272.93 Aligned_cols=342 Identities=13% Similarity=0.038 Sum_probs=243.0
Q ss_pred cCC--CeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHH
Q 012095 93 AGV--SVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (471)
Q Consensus 93 ~g~--~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~a 167 (471)
.|+ .+||+..|. ..++. ++.+.+++.+++.+.. .|....+..+....+++.+.+.++ ...++|++|+|++++
T Consensus 71 dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~-~~~~~~~~~~~~~~L~e~la~~~~--~~~~~v~~~~sGseA 147 (457)
T 3tfu_A 71 DGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMN-HVMFGGLTHEPAARLAKLLVDITP--AGLDTVFFSDSGSVS 147 (457)
T ss_dssp TTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCS-CCCSSSEECHHHHHHHHHHHHHSS--TTEEEEEEESSHHHH
T ss_pred CCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHhcc-CccccccCCHHHHHHHHHHHHhCC--CCcCEEEEeCcHHHH
Confidence 677 899999884 45553 7899999999887632 222223345666777777776665 355799999999999
Q ss_pred HHHHHHHhcC-------CC-CeEEEcCCCCCChHHHHHHcCC--------------EEEEecCCCCCCCcCCHHHHHhhh
Q 012095 168 ILQAVLAVCS-------PG-DEVIIPAPFWVSYPEMARIADA--------------TPVILPTRISENFLLDPKVLESKL 225 (471)
Q Consensus 168 l~~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~G~--------------~~~~v~~~~~~~~~ld~e~l~~~l 225 (471)
+..+++.+.. +| +.|++.+++|.++...+...+. .+..++.........|+++|++++
T Consensus 148 ~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l 227 (457)
T 3tfu_A 148 VEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQL 227 (457)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHH
Confidence 9999988865 66 5899999999887655544421 233344332221224889999998
Q ss_pred c---cCCcEEEEcC-CCCCcccCC-CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecC
Q 012095 226 T---EKSRLLILCS-PSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF 300 (471)
Q Consensus 226 ~---~~~~~i~i~~-p~NPtG~~~-~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 300 (471)
+ +++++|+++. ++||+|..+ +++.+++|.++|++| |+++|+||+|.+|...+... .+..... ... +-||
T Consensus 228 ~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~-gillI~DEv~~g~gr~G~~~-a~~~~~~-~pd---iit~ 301 (457)
T 3tfu_A 228 AQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRY-EVLLIFDEIATGFGRTGALF-AADHAGV-SPD---IMCV 301 (457)
T ss_dssp HHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSS-THHHHTC-CCS---EEEE
T ss_pred HhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHc-CCEEEEEcCccCCccccchh-HhHhcCC-Cce---EEEE
Confidence 7 5677787877 899999766 788899999999999 99999999999875544311 1111111 122 2289
Q ss_pred CcccCccc-hhheeeEcCHHHHHHHHHH-----HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHH
Q 012095 301 SKAFAMTG-WRLGYIAGPKHFVAACNKI-----QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 374 (471)
Q Consensus 301 SK~~g~~G-~R~G~v~~~~~~i~~l~~~-----~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~ 374 (471)
||.++ .| +|+||+++++++++.+... ....+++.+++++.++.++|+... + +...++++++++++.+.
T Consensus 302 sK~l~-gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~---~--~~~~~~~~~~~~~l~~~ 375 (457)
T 3tfu_A 302 GKALT-GGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLL---G--QDWRTRITELAAGLTAG 375 (457)
T ss_dssp CGGGG-TTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHH---T--SCHHHHHHHHHHHHHHH
T ss_pred Chhhh-CCCcceEEEEEcHHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHh---h--hHHHHHHHHHHHHHHHH
Confidence 99886 56 7999999999999988632 233567789999999999887411 1 23445555566666666
Q ss_pred hcCC---CCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHH
Q 012095 375 FGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLT 449 (471)
Q Consensus 375 L~~~---~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e 449 (471)
|.++ +++....+.|. |+++.+++. .+..++++.|+++ ||.+.|.. +++|+++. .+++
T Consensus 376 L~~l~~~~~v~~vr~~G~-~~~i~l~~~-----------~~~~~~~~~l~~~-Gv~v~~~~-----~~lRi~p~~~~t~e 437 (457)
T 3tfu_A 376 LDTARALPAVTDVRVCGA-IGVIECDRP-----------VDLAVATPAALDR-GVWLRPFR-----NLVYAMPPYICTPA 437 (457)
T ss_dssp HGGGGGSTTEEEEEECSS-CEEEEESSC-----------CCHHHHHHHHHHT-TEECCCBT-----TEEEECCCTTCCHH
T ss_pred HHHHhcCCCeeeeecCCe-EEEEEECCc-----------ccHHHHHHHHHHC-CeEEEecC-----CEEEEECCCCCCHH
Confidence 6653 45555555555 467787653 1578899999887 99998842 68999865 4999
Q ss_pred HHHHHHHHHHHHHHhhCC
Q 012095 450 TLQAAVERIKKGLLTLRP 467 (471)
Q Consensus 450 ~i~~~~~~l~~~l~~~~~ 467 (471)
++++++++|+++++++..
T Consensus 438 ei~~~l~~L~~~l~~~~~ 455 (457)
T 3tfu_A 438 EITQITSAMVEVARLVGS 455 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999987654
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=5.3e-31 Score=271.92 Aligned_cols=348 Identities=17% Similarity=0.132 Sum_probs=256.0
Q ss_pred HHHHHHHHHHhcCC----CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCC---CCCCHHHHHHHHHHHHHHhCCCCC
Q 012095 82 AITDQATALAQAGV----SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP---NAGTLELRSAICHKLKEENGLSYT 154 (471)
Q Consensus 82 ~~~~~~~~~~~~g~----~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~---~~G~~~lr~~ia~~~~~~~g~~~~ 154 (471)
++......+...+. .++.|+ |.... ..+.+.+++.+.+ ...+.|.+ .+|..++++.+++++.+.+|.+.
T Consensus 49 ~~~~~~~~l~~~~~~~~~~~~~lg-~~~~~-~~p~v~~~~~~~~-~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~- 124 (474)
T 1wyu_B 49 TLVRHYTGLSRRQVGVDTTFYPLG-SCTMK-YNPKLHEEAARLF-ADLHPYQDPRTAQGALRLMWELGEYLKALTGMDA- 124 (474)
T ss_dssp HHHHHHHHHHTTCCCTTTSCCCBT-TTCCC-CCCHHHHHHHHTT-SSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE-
T ss_pred HHHHHHHHHHhCCCCcccCccccc-ccccc-CCHHHHHHHHHHH-HhcCCCCchhhChHHHHHHHHHHHHHHHHHCCCc-
Confidence 44445555555443 357777 54332 2344555555442 12333433 56778999999999999999642
Q ss_pred CCcEEEeCChHHHHHHHHHHh----cCCCC-----eEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhh
Q 012095 155 PDQILVSNGAKQSILQAVLAV----CSPGD-----EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL 225 (471)
Q Consensus 155 ~~~i~it~G~~~al~~~~~~l----~~~gd-----~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l 225 (471)
.+++++|+++++..++.++ .++|| +|++++|+|+++...++..|++++.++++. ++.+|+++|++++
T Consensus 125 --~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~--~~~~d~~~L~~~i 200 (474)
T 1wyu_B 125 --ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGP--EGEVDLEALKREL 200 (474)
T ss_dssp --EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCT--TSSBCHHHHHHHC
T ss_pred --eeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCCC--CCCcCHHHHHHhh
Confidence 4778899999998755554 35887 999999999999999999999999999863 5779999999999
Q ss_pred ccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccC
Q 012095 226 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305 (471)
Q Consensus 226 ~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 305 (471)
++++++|++++| ||||.+. +++++|+++|++| ++++|+||+|..+.++. ..... .+..+++.|++|.|+
T Consensus 201 ~~~t~~v~~~~p-n~~G~~~--~~l~~i~~l~~~~-g~~li~Dea~~~~~~g~---~~~~~----~g~di~~~s~~K~~~ 269 (474)
T 1wyu_B 201 GPHVAALMLTNP-NTLGLFE--RRILEISRLCKEA-GVQLYYDGANLNAIMGW---ARPGD----MGFDVVHLNLHKTFT 269 (474)
T ss_dssp STTEEEEEECSS-CTTSCCC--TTHHHHHHHHHHH-TCEEEEEGGGGGGTTTT---CCHHH----HTCSEEECCTTTTTC
T ss_pred CCCceEEEEECC-CCCcccC--CCHHHHHHHHHHc-CCEEEEeCchhhhhccC---CCccc----CCCcEEEEeCccccc
Confidence 988999999998 6899883 2399999999999 99999999998765421 11111 245688999999998
Q ss_pred cc-c---hhheeeEcCHHHHHHHHH-HH------------------hcccCCCChHHHHHHHHHHhccCCChHHHHHHHH
Q 012095 306 MT-G---WRLGYIAGPKHFVAACNK-IQ------------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 362 (471)
Q Consensus 306 ~~-G---~R~G~v~~~~~~i~~l~~-~~------------------~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~ 362 (471)
++ | .|+||+++++++++.+.. +. .....+.+.+++.++..++... ..+++++..+
T Consensus 270 ~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~--g~~~l~~~~~ 347 (474)
T 1wyu_B 270 VPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTL--GLEGLKKAAA 347 (474)
T ss_dssp CCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred cCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 76 5 499999999988776541 10 0112346777888888877631 2567888899
Q ss_pred HHHHHHHHHHHHhcCCCCCeeeCCCcceE-EeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC--CCCc
Q 012095 363 AFRERRDFLVKSFGELEGVKMSEPQGAFY-LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--DDTC 439 (471)
Q Consensus 363 ~~~~~r~~l~~~L~~~~g~~~~~p~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~--~~~~ 439 (471)
++.++++++.+.|+++ |+++..+...+. +|++++.. .+..+++++|+++ ||.+ |+..|. .+++
T Consensus 348 ~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~L~~~-Gi~~-~~~~~~~~~~~~ 413 (474)
T 1wyu_B 348 LAVLNARYLKELLKEK-GYRVPYDGPSMHEFVAQPPEG-----------FRALDLAKGLLEL-GFHP-PTVYFPLIVKEA 413 (474)
T ss_dssp HHHHHHHHHHHHHHHT-TCBCSSCSSCCSCEEEBCSTT-----------CCHHHHHHHHHHT-TCCC-CEESCSTTSTTC
T ss_pred HHHHHHHHHHHHHhhc-CcEecCCCCcceEEEEEcCCC-----------CCHHHHHHHHHHC-Cccc-cccccccccCCE
Confidence 9999999999999987 887743332331 45565321 2678999999877 8874 666664 3689
Q ss_pred EEEEeec--CHHHHHHHHHHHHHHHHh
Q 012095 440 IRISYAA--SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 440 iRis~~~--~~e~i~~~~~~l~~~l~~ 464 (471)
+||+++. +++++++++++|++++++
T Consensus 414 lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 414 LMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred EEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 9999997 899999999999998754
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-31 Score=273.12 Aligned_cols=342 Identities=15% Similarity=0.145 Sum_probs=239.4
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPN-AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~-~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
.|+.++|++.|. .+++. ++.+.+++.+++.+.. |... .+..++++.+++.+.+.++ ..+++|++|+|+++++
T Consensus 48 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~ggsea~ 123 (449)
T 3a8u_X 48 KGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLD--YSPGFQYGHPLSFQLAEKITDLTP--GNLNHVFFTDSGSECA 123 (449)
T ss_dssp TCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCS--CCCSSSCCCHHHHHHHHHHHTTSS--TTEEEEEEESSHHHHH
T ss_pred CCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCC--CccccccCCHHHHHHHHHHHHhCC--CCCCEEEEcCcHHHHH
Confidence 466789998776 34544 7899999999876532 3222 4556778888888877665 3678999999999999
Q ss_pred HHHHHHhcC--------CCCeEEEcCCCCCChHH-HHHHcCC------------EEEEecCCC--CCCC-cCC-------
Q 012095 169 LQAVLAVCS--------PGDEVIIPAPFWVSYPE-MARIADA------------TPVILPTRI--SENF-LLD------- 217 (471)
Q Consensus 169 ~~~~~~l~~--------~gd~Vlv~~p~y~~~~~-~~~~~G~------------~~~~v~~~~--~~~~-~ld------- 217 (471)
..+++++.. +||.|++.+|+|+++.. .+...|. .+..++.+. ..+| ++|
T Consensus 124 ~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~ 203 (449)
T 3a8u_X 124 LTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIA 203 (449)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHH
Confidence 999988764 67999999999988653 4554431 234444321 1111 246
Q ss_pred -HHHHHhhhc----cCCcEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCc-cccccCCC
Q 012095 218 -PKVLESKLT----EKSRLLILCSP-SNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPG 289 (471)
Q Consensus 218 -~e~l~~~l~----~~~~~i~i~~p-~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~~ 289 (471)
+++|+++++ +++++| +++| +||||. ..+++++++|.++|++| +++||+||+|.++.+.+... .....+.
T Consensus 204 ~~~~le~~l~~~~~~~~~~v-i~~p~~~~tG~~~~~~~~l~~l~~l~~~~-~~~li~Dev~~~~g~~g~~~~~~~~~~~- 280 (449)
T 3a8u_X 204 LADELLKLIELHDASNIAAV-FVEPLAGSAGVLVPPEGYLKRNREICNQH-NILLVFDEVITGFGRTGSMFGADSFGVT- 280 (449)
T ss_dssp HHHHHHHHHHHHCGGGEEEE-EECSSBTTTTCBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSSHHHHHTCC-
T ss_pred HHHHHHHHHHhcCCCCEEEE-EEcCccCCCCCccCCHHHHHHHHHHHHHh-CCEEEEeccccCccccCcchhhhhcCCC-
Confidence 999999886 344444 4556 578996 66799999999999999 99999999998764433211 1111121
Q ss_pred CCCceEEEecCCcccCccc-hhheeeEcCHHHHHHHHHH---------HhcccCCCChHHHHHHHHHHhccCCChHHHHH
Q 012095 290 MWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI---------QSQFTSGASSISQKAGVAALGLGYAGGEVVSK 359 (471)
Q Consensus 290 ~~~~~i~~~S~SK~~g~~G-~R~G~v~~~~~~i~~l~~~---------~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~ 359 (471)
.. +.||||.++ +| +|+||+++++++++.+... ....+++.+++++.++.++|+.. ++ +.
T Consensus 281 --~d---i~s~sK~l~-~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~---~~--~~ 349 (449)
T 3a8u_X 281 --PD---LMCIAKQVT-NGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLL---QK--EN 349 (449)
T ss_dssp --CS---EEEECGGGG-TTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHH---HH--TT
T ss_pred --CC---EEEEccccc-CCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHH---Hh--cC
Confidence 12 228999998 68 9999999999999888753 12345677899999998888741 11 24
Q ss_pred HHHHHHHHHHHHHHHhcCCCCC---eeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC
Q 012095 360 MVKAFRERRDFLVKSFGELEGV---KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD 436 (471)
Q Consensus 360 ~~~~~~~~r~~l~~~L~~~~g~---~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~ 436 (471)
..++++++++++.+.|.++.++ ....+ .|+++|++++..... . ..+..++.+.|+++ ||.+.|+.
T Consensus 350 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~g~~~~i~~~~~~~~--~----~~~~~~~~~~l~~~-Gv~v~~~g---- 417 (449)
T 3a8u_X 350 LVQSVAEVAPHFEKALHGIKGAKNVIDIRN-FGLAGAIQIAPRDGD--A----IVRPFEAGMALWKA-GFYVRFGG---- 417 (449)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSTTEEEEEE-ETTEEEEEECCBTTB--S----SHHHHHHHHHHHHH-TEECEEET----
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEee-eEEEEEEEEecCccc--c----cccHHHHHHHHHHC-CcEEecCC----
Confidence 5667777888888888764322 22233 456688888753100 0 00123688888876 99999972
Q ss_pred CCcEEEEee--cCHHHHHHHHHHHHHHHHhh
Q 012095 437 DTCIRISYA--ASLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 437 ~~~iRis~~--~~~e~i~~~~~~l~~~l~~~ 465 (471)
+++||++. .+++++++++++|+++++++
T Consensus 418 -~~iRis~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 418 -DTLQFGPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp -TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred -CEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 78999965 49999999999999998764
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.1e-31 Score=271.63 Aligned_cols=351 Identities=14% Similarity=0.096 Sum_probs=242.3
Q ss_pred cCCCeEEcCCC--CCCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAG--EPDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g--~~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+++||+..| ...++. ++.+++|+.+++.+..+.|+...+..+.+..+++.+.+..+ ...++|++++|+++++.
T Consensus 53 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~lae~l~~~~~--~~~~~v~~~~sGseA~~ 130 (472)
T 3hmu_A 53 EGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAP--GDLNHVFFAGGGSEAND 130 (472)
T ss_dssp TCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCSSSSEECHHHHHHHHHHHHHSC--TTEEEEEEESSHHHHHH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCHHHHHH
Confidence 57889999988 455553 78999999999987555565555667888888888888765 35679999999999999
Q ss_pred HHHHHhcC--------CCCeEEEcCCCCCChHHHHHHcCC------------EEEEecCCC--C-CCCcCC--------H
Q 012095 170 QAVLAVCS--------PGDEVIIPAPFWVSYPEMARIADA------------TPVILPTRI--S-ENFLLD--------P 218 (471)
Q Consensus 170 ~~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~G~------------~~~~v~~~~--~-~~~~ld--------~ 218 (471)
.+++.+.. +++.|++.+|+|+++...+...+. .++.++... . +++ .| +
T Consensus 131 ~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~ 209 (472)
T 3hmu_A 131 TNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARA 209 (472)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHH
Confidence 99998874 458999999999998876665544 234454321 0 111 23 7
Q ss_pred HHHHhhhc----cCCcEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCc
Q 012095 219 KVLESKLT----EKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 293 (471)
Q Consensus 219 e~l~~~l~----~~~~~i~i~~p~NPtG~~~-~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~ 293 (471)
++|+++++ +++++|+++.++|++|.+. +++++++|.++|++| |+++|+||+|.+|...|.. ........ ...
T Consensus 210 ~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~-gillI~DEv~~gfgr~G~~-~a~~~~~v-~pd 286 (472)
T 3hmu_A 210 RELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKY-DILLIADEVICGFGRTGNW-FGTQTMGI-RPH 286 (472)
T ss_dssp HHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSS-CHHHHHTC-CCS
T ss_pred HHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEEccccCCcccCcc-chhHHhCC-CCc
Confidence 88888886 3455565666677888655 899999999999999 9999999999987554421 11111111 111
Q ss_pred eEEEecCCcccCccchhheeeEcCHHHHHHHHH--HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHH-HHHHH
Q 012095 294 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK--IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR-ERRDF 370 (471)
Q Consensus 294 ~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~--~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~-~~r~~ 370 (471)
+.+|||.++..|+|+||+++++++++.+.. .....+++.+++++.++.++|+.. ++ +.+.++++ ++.++
T Consensus 287 ---i~t~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~---~~--~~~~~~~~~~~~~~ 358 (472)
T 3hmu_A 287 ---IMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRIL---EE--ENILDHVRNVAAPY 358 (472)
T ss_dssp ---EEEECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHH---HH--TTHHHHHHHTHHHH
T ss_pred ---eeeechhhhcCCcceEEEEECHHHHHhcccCCccccCCCCCCHHHHHHHHHHHHHH---HH--hHHHHHHHHHHHHH
Confidence 336899998445999999999999998831 123346778999999999999741 11 23334444 44444
Q ss_pred HHHHhc---CCCCCeeeCCCcceEEeEecCCccCCcccCCCC--CCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe-
Q 012095 371 LVKSFG---ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK--IENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY- 444 (471)
Q Consensus 371 l~~~L~---~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~- 444 (471)
+.+.|+ +.+++....+.|.| +++.+...... ...+.. .....++++.|+++ ||++.|+. +++||+.
T Consensus 359 l~~~L~~l~~~~~v~~vr~~G~~-~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~g-----~~iRi~p~ 430 (472)
T 3hmu_A 359 LKEKWEALTDHPLVGEAKIVGMM-ASIALTPNKAS-RAKFASEPGTIGYICRERCFAN-NLIMRHVG-----DRMIISPP 430 (472)
T ss_dssp HHHHHHGGGGSTTEEEEEEETTE-EEEEECSCGGG-TCCBSSCTTHHHHHHHHHHHHT-TBCCEEET-----TEEEECCC
T ss_pred HHHHHHHHhcCCCeEEEEecCce-EEEEEecCccc-cccccchhHHHHHHHHHHHHHC-CcEEEecC-----CEEEEECC
Confidence 444443 34556666666665 45555421000 000000 00156788888876 99999863 7999994
Q ss_pred -ecCHHHHHHHHHHHHHHHHhh
Q 012095 445 -AASLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 445 -~~~~e~i~~~~~~l~~~l~~~ 465 (471)
..+++++++++++|+++++++
T Consensus 431 ~~~t~e~i~~~l~~l~~~l~~~ 452 (472)
T 3hmu_A 431 LVITPAEIDEMFVRIRKSLDEA 452 (472)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 459999999999999998764
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-30 Score=268.91 Aligned_cols=350 Identities=14% Similarity=0.117 Sum_probs=245.0
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.+||+..|. ..++. ++.+++|+.+++.+....| ...+..+.+.++++++.+.++. ..++|++++|+++++.
T Consensus 52 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~-~~~~~~~~~~~la~~l~~~~~~--~~~~v~~~~sGseA~~ 128 (476)
T 3i5t_A 52 DGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYAS-PWYMATSPAARLAEKIATLTPG--DLNRIFFTTGGSTAVD 128 (476)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCC-TTTCBCHHHHHHHHHHHTTSST--TCCEEEEESSHHHHHH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcc-cCccCCHHHHHHHHHHHhcCCC--CcCEEEEeCchHHHHH
Confidence 578899999884 55553 8899999999987743333 3257788999999999887763 4579999999999999
Q ss_pred HHHHHhcC-------C-CCeEEEcCCCCCChHHHHHHcCCE-------------EEEec--CCCCCCCcCC--------H
Q 012095 170 QAVLAVCS-------P-GDEVIIPAPFWVSYPEMARIADAT-------------PVILP--TRISENFLLD--------P 218 (471)
Q Consensus 170 ~~~~~l~~-------~-gd~Vlv~~p~y~~~~~~~~~~G~~-------------~~~v~--~~~~~~~~ld--------~ 218 (471)
.+++.+.. + ++.|++.+|+|+++...+...+.. +..++ ..... +..| +
T Consensus 129 ~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~ 207 (476)
T 3i5t_A 129 SALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHA-GNRSQEAFLDDLV 207 (476)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGC-TTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCccccc-CCCchHHHHHHHH
Confidence 99998863 3 578999999999988766554432 22222 21111 1222 7
Q ss_pred HHHHhhhc----cCCcEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccc-cCCCCCC
Q 012095 219 KVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA-SLPGMWE 292 (471)
Q Consensus 219 e~l~~~l~----~~~~~i~i~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~-~~~~~~~ 292 (471)
++|+++++ +++++|+++.++|++|. +++++++++|.++|++| |++||+||+|.++...|.. ..+. .... ..
T Consensus 208 ~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~-gillI~DEv~~g~gr~G~~-~~~~~~~~v-~p 284 (476)
T 3i5t_A 208 QEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKH-DILYISDEVVTGFGRCGEW-FASEKVFGV-VP 284 (476)
T ss_dssp HHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSS-CHHHHTTCC-CC
T ss_pred HHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEEecccCCccccCc-eeeecccCC-Cc
Confidence 88888885 45667777777888885 88999999999999999 9999999999987555432 1122 1111 11
Q ss_pred ceEEEecCCcccCccc-hhheeeEcCHHHHHHHHHH-------HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHH
Q 012095 293 RTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364 (471)
Q Consensus 293 ~~i~~~S~SK~~g~~G-~R~G~v~~~~~~i~~l~~~-------~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~ 364 (471)
. +.+|||.++ .| +|+||+++++++++.+... ....+++.+++++.++.++|+.. ++ +.+.+.+
T Consensus 285 d---i~t~sK~l~-~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~---~~--~~~~~~~ 355 (476)
T 3i5t_A 285 D---IITFAKGVT-SGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELM---ER--EGIVDQA 355 (476)
T ss_dssp S---EEEECGGGG-TTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHH---HH--TTHHHHH
T ss_pred c---hhhhhhhhc-CCCcCeEEEEECHHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHH---Hh--HHHHHHH
Confidence 2 336899998 68 9999999999999988753 23356788999999999999741 11 2344555
Q ss_pred HHHHHHHHHHhcC---CCCCeeeCCCcceEEeEecCCccCCcccCCCC-CCCHHHHHHHHHHcCCEEEECCCCCCCCCcE
Q 012095 365 RERRDFLVKSFGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK-IENSESLCRYLLDKAQVALVPGDAFGDDTCI 440 (471)
Q Consensus 365 ~~~r~~l~~~L~~---~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~i 440 (471)
+++.+++.+.|++ ++.+....+.|.| +++.+...... ...+.. ......+++.|+++ ||.+.|.. +++
T Consensus 356 ~~~~~~l~~~L~~l~~~~~v~~v~~~G~~-~~i~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~g-----~~i 427 (476)
T 3i5t_A 356 REMADYFAAALASLRDLPGVAETRSVGLV-GCVQCLLDPTR-ADGTAEDKAFTLKIDERCFEL-GLIVRPLG-----DLC 427 (476)
T ss_dssp HHHHHHHHHHHHTTTTSTTEEEEEEETTE-EEEEECCC------CCHHHHHHHHHHHHHHHHT-TEECEEET-----TEE
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEecCce-eEEEEecCccc-cccccchhHHHHHHHHHHHHC-CCEEEecC-----CEE
Confidence 5555555555554 4455555666665 56666532000 000000 00145788888876 99999842 799
Q ss_pred EEE--eecCHHHHHHHHHHHHHHHHhhC
Q 012095 441 RIS--YAASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 441 Ris--~~~~~e~i~~~~~~l~~~l~~~~ 466 (471)
||+ +..+++++++++++|+++++++.
T Consensus 428 Ri~p~l~~t~e~i~~~l~~l~~~l~~~~ 455 (476)
T 3i5t_A 428 VISPPLIISRAQIDEMVAIMRQAITEVS 455 (476)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999 55599999999999999987653
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-31 Score=272.47 Aligned_cols=361 Identities=14% Similarity=0.129 Sum_probs=256.5
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCC-C------CCCCCCCHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT-R------YTPNAGTLELRSA 140 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~-~------Y~~~~G~~~lr~~ 140 (471)
++.++....+..+..+...... + .+.|.|..|++. +|+.+.+++.+.+.+... + |+...+..++++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~-~---~~~i~L~a~e~~--~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~ 94 (483)
T 1rv3_A 21 LAQPLKDSDAEVYDIIKKESNR-Q---RVGLELIASENF--ASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETL 94 (483)
T ss_dssp TTSCHHHHCHHHHHHHHHHHHH-H---HSSEECCTTCCC--CCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHH
T ss_pred HhhhhhhcCHHHHHHHHHHHHH-h---hcCeEEEcCCCC--CCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHH
Confidence 4445555555433333222221 1 357999888763 578899999887765321 2 3333455788888
Q ss_pred HHHHHHHHhCCCCCC--CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH--------HHHHcC--CEEEEecC
Q 012095 141 ICHKLKEENGLSYTP--DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE--------MARIAD--ATPVILPT 208 (471)
Q Consensus 141 ia~~~~~~~g~~~~~--~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~G--~~~~~v~~ 208 (471)
+.+++++.+|.+.+. .+|++++|+ +++..++.++++|||+|++++|.|.++.. .+...| .+++.+++
T Consensus 95 ~~~~~a~~~g~~~~~~~~~V~~~sGs-~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~ 173 (483)
T 1rv3_A 95 CQKRALQAYGLDPQCWGVNVQPYSGS-PANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKV 173 (483)
T ss_dssp HHHHHHHHTTCCTTTEEEECCCSSHH-HHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECB
T ss_pred HHHHHHHHhCCCcccCceEEEECCcH-HHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECcc
Confidence 999999999965332 358888888 88888899999999999999999887753 234445 56666655
Q ss_pred CCCCCCcCCHHHHHhhhc-cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCc-cccCCCCcccccc
Q 012095 209 RISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFAS 286 (471)
Q Consensus 209 ~~~~~~~ld~e~l~~~l~-~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~-~~~~~~~~~~~~~ 286 (471)
++ +++.+|+++|+++++ +++|+|++ +++||+ .+++ +++|.++|++| |++||+|++|.. +.+.+....++
T Consensus 174 ~~-~~~~iD~d~le~~i~~~~tklIi~-~~sn~~-~~~d---l~~i~~ia~~~-g~~livD~ah~~g~~~~~~~~~p~-- 244 (483)
T 1rv3_A 174 NP-DTGYIDYDRLEENARLFHPKLIIA-GTSCYS-RNLD---YGRLRKIADEN-GAYLMADMAHISGLVVAGVVPSPF-- 244 (483)
T ss_dssp CT-TTCSBCHHHHHHHHHHHCCSEEEE-CCSSCC-SCCC---HHHHHHHHHHT-TCEEEEECTTTHHHHHHTSSCCGG--
T ss_pred cc-CCCcCCHHHHHHHHhhcCCcEEEE-eCCcCC-CcCC---HHHHHHHHHHc-CCEEEEEccchhcccccCCCCCCC--
Confidence 54 357899999999998 79999999 899988 8888 89999999999 999999999873 33333211111
Q ss_pred CCCCCCceEEEecCCcccCccchhheeeEcCHH---------------HHHHHHHHHhcc-cCCCChHHHHHHHHHHhcc
Q 012095 287 LPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH---------------FVAACNKIQSQF-TSGASSISQKAGVAALGLG 350 (471)
Q Consensus 287 ~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~---------------~i~~l~~~~~~~-~~~~~~~~q~aa~~~L~~~ 350 (471)
+ ...+++.|+||++ +|+|.||++++++ +.+.+....... ..+++...+.+...++...
T Consensus 245 -~---~~div~~s~~K~l--~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~ 318 (483)
T 1rv3_A 245 -E---HCHVVTTTTHKTL--RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQA 318 (483)
T ss_dssp -G---TCSEEEEESSGGG--CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHH
T ss_pred -C---CCcEEEecCcccC--CCCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHH
Confidence 1 2348899999987 6889999999874 344444332222 2234444445555566542
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC-cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEE
Q 012095 351 YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV 429 (471)
Q Consensus 351 ~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~ 429 (471)
...++++..+++.++++++.+.|.++ |+++..+. +++++|++++.. + .+..++.+.| ++.||.+.
T Consensus 319 --~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~~~-g---------~~~~~~~~~L-~~~gI~v~ 384 (483)
T 1rv3_A 319 --MTPEFKEYQRQVVANCRALSAALVEL-GYKIVTGGSDNHLILVDLRSK-G---------TDGGRAEKVL-EACSIACN 384 (483)
T ss_dssp --TSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEEGGGG-T---------CCHHHHHHHH-HHTTEECE
T ss_pred --hChhHHHHHHHHHHHHHHHHHHHHhc-CCEeccCCCCCceEEEeccCC-C---------CCHHHHHHHH-HhCCcEEe
Confidence 13567888999999999999999988 89887653 457788888632 1 1566776655 55799999
Q ss_pred ----CCCCCC-CCCcEEEEeec--C----HHHHHHHHHHHHHHHHh
Q 012095 430 ----PGDAFG-DDTCIRISYAA--S----LTTLQAAVERIKKGLLT 464 (471)
Q Consensus 430 ----pg~~f~-~~~~iRis~~~--~----~e~i~~~~~~l~~~l~~ 464 (471)
||..+. .++++||+++. + ++++++++++|.++++.
T Consensus 385 ~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 385 KNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp EECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 887321 35799999986 5 89999999999998875
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=262.79 Aligned_cols=337 Identities=14% Similarity=0.108 Sum_probs=240.7
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcC-CCCCCC------CCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHH
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTP------NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~-~~~Y~~------~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~a 167 (471)
..+++++.+.| + |+.+.+++.+++.+. ..+|+. .....++++.+.+.+.+.+|. +++.+++++| +++
T Consensus 24 ~~~~~~~~~~~-~--~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~--~~~~i~~~sG-t~a 97 (405)
T 2vi8_A 24 AKIELIASENF-V--SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGA--EHANVQPHSG-AQA 97 (405)
T ss_dssp HSEECCTTCCC-C--CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC--SEEECCCSSH-HHH
T ss_pred cceeeccCccc-C--CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCC--CceEEEecCc-HHH
Confidence 34666655543 3 888999998877532 222221 122345665555666666774 3444555666 999
Q ss_pred HHHHHHHhcCCCCeEEEcCCCCCChHH-H--HHHcC--CEEEEecCCCCCCCcCCHHHHHhhhcc-CCcEEEEcCCCCCc
Q 012095 168 ILQAVLAVCSPGDEVIIPAPFWVSYPE-M--ARIAD--ATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPT 241 (471)
Q Consensus 168 l~~~~~~l~~~gd~Vlv~~p~y~~~~~-~--~~~~G--~~~~~v~~~~~~~~~ld~e~l~~~l~~-~~~~i~i~~p~NPt 241 (471)
+..++++++++||.|++++|+|..+.. . +...| .+++.+++++ .++.+|++++++++++ ++++|++ +|+|.
T Consensus 98 ~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~v~~-~~~~~- 174 (405)
T 2vi8_A 98 NMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDP-ETHVIDYDDVREKARLHRPKLIVA-AAAAY- 174 (405)
T ss_dssp HHHHHHHHCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCT-TTCSBCHHHHHHHHHHHCCSEEEE-CCSSC-
T ss_pred HHHHHHHhcCCCCEEEEecccccchhcccchhhhccceeEEEeccccc-ccCCcCHHHHHHHHHhcCCeEEEE-eCCCC-
Confidence 999999999999999999999988753 1 12334 4888888753 3577999999999986 8898877 55553
Q ss_pred ccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccC-ccchhheeeEcCHHH
Q 012095 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHF 320 (471)
Q Consensus 242 G~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~R~G~v~~~~~~ 320 (471)
|...+ +++|.++|++| |++||+||+|........... ..+. ...+++.||||.++ +.| ||+++++++
T Consensus 175 ~~~~~---l~~i~~l~~~~-~~~li~Dea~~~g~~~~~~~~--~~~~---~~di~~~s~sK~~~g~~g---G~~~~~~~~ 242 (405)
T 2vi8_A 175 PRIID---FAKFREIADEV-GAYLMVDMAHIAGLVAAGLHP--NPVP---YAHFVTTTTHKTLRGPRG---GMILCQEQF 242 (405)
T ss_dssp CSCCC---HHHHHHHHHHH-TCEEEEECTTTHHHHHTTSSC--CSTT---TCSEEEEESSSTTCCCSC---EEEEECHHH
T ss_pred CccCC---HHHHHHHHHHc-CCEEEEEccccccccccCcCC--Cccc---cCCEEEEeccccCCCCCC---eEEEEcHHH
Confidence 45556 89999999999 999999999995433211111 1121 22388999999996 666 999999999
Q ss_pred HHHHHHHHhcccCCCChHHH-HHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC-CcceEEeEecCC
Q 012095 321 VAACNKIQSQFTSGASSISQ-KAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QGAFYLFIDFST 398 (471)
Q Consensus 321 i~~l~~~~~~~~~~~~~~~q-~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p-~~g~~~~~~~~~ 398 (471)
++.+......+..+.+.+.+ .++.++++.. ...++++++++++++++++.+.|+++ |+++..| .+++++|+.++.
T Consensus 243 ~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~ 319 (405)
T 2vi8_A 243 AKQIDKAIFPGIQGGPLMHVIAAKAVAFGEA--LQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNHLLLVDLRP 319 (405)
T ss_dssp HHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGG
T ss_pred HHHHHhhhcccccCCCCHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHhC-CCeEecCCCCceEEEEEccC
Confidence 99888776555544433444 4445666531 12578899999999999999999988 8888765 457888999864
Q ss_pred ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC----CC--CCCcEEEEeec------CHHHHHHHHHHHHHHHHhhC
Q 012095 399 YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA----FG--DDTCIRISYAA------SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~----f~--~~~~iRis~~~------~~e~i~~~~~~l~~~l~~~~ 466 (471)
. + .+..++.+.|.+ +||.+.+|.. ++ .++++|++++. +++++++++++|++++++..
T Consensus 320 ~-~---------~~~~~~~~~l~~-~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 388 (405)
T 2vi8_A 320 Q-Q---------LTGKTAEKVLDE-VGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVG 388 (405)
T ss_dssp G-T---------CCHHHHHHHHHH-HTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTT
T ss_pred C-C---------CCHHHHHHHHHH-cCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhccc
Confidence 2 0 156788887765 5999999862 22 34689999984 79999999999999987654
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-30 Score=261.33 Aligned_cols=335 Identities=12% Similarity=0.059 Sum_probs=235.6
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCC-CCC------CCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGF-TRY------TPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~-~~Y------~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
+.|+|..+++.. ++.+++++.+.+.+.. .+| +......++++.+.+.+.+.+|. ++++|++++| ++++
T Consensus 26 ~~i~l~~~~~~~--~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~--~~~~i~~~sG-t~a~ 100 (417)
T 3n0l_A 26 EGLEMIASENFT--LPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNC--KFANVQPNSG-SQAN 100 (417)
T ss_dssp HSEECCTTCCCC--CHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC--SEEECCCSSH-HHHH
T ss_pred cCeeeecccCCC--CHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCC--CCcceEeccH-HHHH
Confidence 468888777654 7889999888774322 222 22233456777667777777774 5667888888 7999
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChHH---HHHH--cCCEEEEecCCCCCCCcCCHHHHHhhhc-cCCcEEEEcCCCCCcc
Q 012095 169 LQAVLAVCSPGDEVIIPAPFWVSYPE---MARI--ADATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTG 242 (471)
Q Consensus 169 ~~~~~~l~~~gd~Vlv~~p~y~~~~~---~~~~--~G~~~~~v~~~~~~~~~ld~e~l~~~l~-~~~~~i~i~~p~NPtG 242 (471)
..++.++++|||+|++++|+|.++.. .+.. .+..++.++++ +++.+|+++|+++++ +++++|++++|+| |
T Consensus 101 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--G 176 (417)
T 3n0l_A 101 QGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVE--LDGRIDYEKVREIAKKEKPKLIVCGASAY--A 176 (417)
T ss_dssp HHHHHHHSCTTCEEEEECC----------------CCSEEEEECCC--TTSSCCHHHHHHHHHHHCCSEEEECCSSC--C
T ss_pred HHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCC--CCCCcCHHHHHHHHHhcCCeEEEECCccc--C
Confidence 99999999999999999999987654 3333 34456666665 567799999999998 6899999888886 8
Q ss_pred cCCCHHHHHHHHHHHHhCCCeEEEEccCCC-ccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcC-HHH
Q 012095 243 SVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHF 320 (471)
Q Consensus 243 ~~~~~~~l~~i~~l~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~-~~~ 320 (471)
.+++ +++|.++|++| |++||+||+|. ++.+.+.....+ ....+++.||||.+ +|+|+||++++ +++
T Consensus 177 ~~~~---l~~i~~l~~~~-~~~li~Dea~~~g~~~~~~~~~~~------~~~di~~~s~sK~l--~g~~~G~~~~~~~~~ 244 (417)
T 3n0l_A 177 RVID---FAKFREIADEI-GAYLFADIAHIAGLVVAGEHPSPF------PYAHVVSSTTHKTL--RGPRGGIIMTNDEEL 244 (417)
T ss_dssp SCCC---HHHHHHHHHHH-TCEEEEECTTTHHHHHTTSSCCCT------TTCSEEEEESSTTT--CSCSCEEEEESCHHH
T ss_pred ccCC---HHHHHHHHHHc-CCEEEEECccchhhhhcccCCCcc------ccceEEEeeCcccc--CCCCeeEEEECCHHH
Confidence 8888 89999999999 99999999964 333433211111 13458999999987 78899999998 789
Q ss_pred HHHHHHHHhcccC-CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC-CCcceEEeEecCC
Q 012095 321 VAACNKIQSQFTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLFIDFST 398 (471)
Q Consensus 321 i~~l~~~~~~~~~-~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~-p~~g~~~~~~~~~ 398 (471)
++.+......... +++...+.++..++... ..+++++.++++.++++++.+.|.+. |+.+.. +..+.++|+.++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~ 321 (417)
T 3n0l_A 245 AKKINSAIFPGIQGGPLMHVIAAKAVGFKFN--LSDEWKVYAKQVRTNAQVLANVLMDR-KFKLVSDGTDNHLVLMSFLD 321 (417)
T ss_dssp HHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECTT
T ss_pred HHHHhhhhCCcccCCcHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHhC-CceeccCCCCceEEEEEccc
Confidence 9988876554433 33444444545555431 13567888889999999999999884 887764 2445668888753
Q ss_pred ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC------CCcEEEEeec------CHHHHHHHHHHHHHHHHhh
Q 012095 399 YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD------DTCIRISYAA------SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~------~~~iRis~~~------~~e~i~~~~~~l~~~l~~~ 465 (471)
. + .+...+.+.|. ++||.+.++..+.. .+.+|+++.. +++++++++++|++++++.
T Consensus 322 ~-~---------~~~~~~~~~l~-~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 389 (417)
T 3n0l_A 322 R-E---------FSGKDADLALG-NAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDV 389 (417)
T ss_dssp S-S---------SCHHHHHHHHH-HTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred C-C---------CCHHHHHHHHH-HcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 2 1 15666666554 56999987654322 3569999863 5799999999999998764
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-31 Score=268.79 Aligned_cols=347 Identities=12% Similarity=0.093 Sum_probs=233.5
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.+||++.|. +.++. |+.+.+++.+++.+....|.+.....+|++.+++++ + ..++|++|+|+++++.
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~---~~~~v~~~~~Gsea~~ 123 (429)
T 3k28_A 51 DGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGAPTEIENKLAKLVIERV----P---SIEIVRMVNSGTEATM 123 (429)
T ss_dssp TCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSCCSSCCHHHHHHHHHHHHHS----T---TCSEEEEESSHHHHHH
T ss_pred CCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcCcCCCCHHHHHHHHHHHHhC----C---CCCEEEEeCChHHHHH
Confidence 578899999887 44553 899999999998875444446555566666666653 3 4689999999999999
Q ss_pred HHHHHhcC--CCCeEEEcCCCCCChHHHHHH-cCCEEEEecCCCCCCCc------------CCHHHHHhhhcc---CCcE
Q 012095 170 QAVLAVCS--PGDEVIIPAPFWVSYPEMARI-ADATPVILPTRISENFL------------LDPKVLESKLTE---KSRL 231 (471)
Q Consensus 170 ~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~-~G~~~~~v~~~~~~~~~------------ld~e~l~~~l~~---~~~~ 231 (471)
.+++.+.. +++.|++.+|+|+++...+.. .|.....++.....++. -|++++++++++ ++++
T Consensus 124 ~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~ 203 (429)
T 3k28_A 124 SALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIAC 203 (429)
T ss_dssp HHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEE
T ss_pred HHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEE
Confidence 99987754 568999999999876543322 22211111111111110 189999998863 4455
Q ss_pred EEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchh
Q 012095 232 LILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWR 310 (471)
Q Consensus 232 i~i~~p~NPtG~~~-~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R 310 (471)
|+++.++|++|... +++++++|.++|++| |++||+||+|.++ ..+... ...... ....+.||||.++ .|+|
T Consensus 204 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~DEv~~g~-~~g~~~-~~~~~~----~~~di~t~sK~~~-~G~~ 275 (429)
T 3k28_A 204 VIVEPVAGNMGVVPPQPGFLEGLREVTEQN-GALLIFDEVMTGF-RVAYNC-GQGYYG----VTPDLTCLGKVIG-GGLP 275 (429)
T ss_dssp EEECSSBCTTSCBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTT-TSSTTH-HHHHHT----CCCSEEEECGGGG-TTSC
T ss_pred EEEcCCCCCCCcccCCHHHHHHHHHHHHHc-CCEEEEecccccc-ccCcch-HHHHhC----CCCceehhhhhhc-CCCC
Confidence 55544455666544 688899999999999 9999999999987 444211 111111 1112457999998 6999
Q ss_pred heeeEcCHHHHHHHHHHH---hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCC----CCCee
Q 012095 311 LGYIAGPKHFVAACNKIQ---SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EGVKM 383 (471)
Q Consensus 311 ~G~v~~~~~~i~~l~~~~---~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~----~g~~~ 383 (471)
+||+++++++++.+.... ...+++.+++++.++.++|+.. + ++++++++++++++.+.|.++ +.+..
T Consensus 276 iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~---~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 349 (429)
T 3k28_A 276 VGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQL---T---PESYVEFERKAEMLEAGLRKAAEKHGIPHH 349 (429)
T ss_dssp CEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTC---C---HHHHHHHHHHHHHHHHHHHHHHHHTTCCCE
T ss_pred eEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHHhhCCCCEE
Confidence 999999999998875432 2345678999999999999862 2 456666777777777766653 33444
Q ss_pred eCCCcceEEeEecCCccCCcc--cCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHH
Q 012095 384 SEPQGAFYLFIDFSTYYGSEA--EGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKG 461 (471)
Q Consensus 384 ~~p~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~ 461 (471)
.++.|.| +++.+........ ..........++++.|+++ ||.+.|+. .+++|+++..+++++++++++|+++
T Consensus 350 ~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----~~~~r~~~~~t~e~i~~~l~~l~~~ 423 (429)
T 3k28_A 350 INRAGSM-IGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQ-GVFLPPSQ----FEGLFLSTVHSDADIEATIAAAEIA 423 (429)
T ss_dssp EEEETTE-EEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHT-TEECCSST----TSCBCCCTTCCHHHHHHHHHHHHHH
T ss_pred EEeeccE-EEEEEecCCcccccccccccHHHHHHHHHHHHHC-CeEEecCC----CCCEEEECCCCHHHHHHHHHHHHHH
Confidence 4455555 5555532100000 0000000236788888876 99999974 3578999888999999999999999
Q ss_pred HHhhC
Q 012095 462 LLTLR 466 (471)
Q Consensus 462 l~~~~ 466 (471)
+++++
T Consensus 424 l~~~~ 428 (429)
T 3k28_A 424 MSKLK 428 (429)
T ss_dssp HHTCC
T ss_pred HHHHh
Confidence 98764
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=261.87 Aligned_cols=334 Identities=15% Similarity=0.068 Sum_probs=225.7
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCC-------CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 97 VIRLAAGEPDFDTPVLIAEAGINAIREGF-------TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 97 ~i~l~~g~~~~~~p~~v~~a~~~~~~~~~-------~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.+.+..+.+. .|+.+.+++.+++.+.. ..|+.......+.+...+++.+.+|. ++++|++++| ++++.
T Consensus 32 ~~~~~~~~n~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~v~~~sG-s~a~~ 106 (420)
T 3gbx_A 32 HIELIASENY--TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGA--DYANVQPHSG-SQANF 106 (420)
T ss_dssp SEECCTTCCC--CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTC--SEEECCCSSH-HHHHH
T ss_pred ceeeeccCCC--CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCC--CCceeEecCc-HHHHH
Confidence 5666666544 58889999988774422 12222233445555555777777774 5567767766 77999
Q ss_pred HHHHHhcCCCCeEEEcCCCCCChH---HHHHH--cCCEEEEecCCCCCCCcCCHHHHHhhhcc-CCcEEEEcCCCCCccc
Q 012095 170 QAVLAVCSPGDEVIIPAPFWVSYP---EMARI--ADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGS 243 (471)
Q Consensus 170 ~~~~~l~~~gd~Vlv~~p~y~~~~---~~~~~--~G~~~~~v~~~~~~~~~ld~e~l~~~l~~-~~~~i~i~~p~NPtG~ 243 (471)
.++++++++||+|+++.|+|.++. ..... .+...+.++.+ .++.+|+++|++++++ ++++|++++|+||+
T Consensus 107 ~a~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~-- 182 (420)
T 3gbx_A 107 AVYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGID--ESGKIDYDEMAKLAKEHKPKMIIGGFSAYSG-- 182 (420)
T ss_dssp HHHHHHCCTTCEEEEEEEC------------CHHHHSEEEEEEEC--TTCSCCHHHHHHHHHHHCCSEEEECCTTCCS--
T ss_pred HHHHHhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCC--ccCCcCHHHHHHHHHhcCCeEEEEecCccCC--
Confidence 999999999999999999998743 22222 33455566554 4567999999999976 69999999999974
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCH---HH
Q 012095 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK---HF 320 (471)
Q Consensus 244 ~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~---~~ 320 (471)
..+ +++|.++|++| |++||+||+|....+........ + ....+++.||||.++ |.|.||+++++ ++
T Consensus 183 ~~~---l~~l~~l~~~~-~~~li~De~~~~~~~~~~~~~~~--~---~~~di~~~s~sK~~~--g~~gg~~~~~~~~~~~ 251 (420)
T 3gbx_A 183 VVD---WAKMREIADSI-GAYLFVDMAHVAGLIAAGVYPNP--V---PHAHVVTTTTHKTLA--GPRGGLILAKGGDEEL 251 (420)
T ss_dssp CCC---HHHHHHHHHHT-TCEEEEECTTTHHHHHTTSSCCS--T---TTSSEEEEESSGGGC--SCSCEEEEESSCCHHH
T ss_pred ccC---HHHHHHHHHHc-CCEEEEECCcchhceecccCCcc--c---ccCCEEEeecccCCC--CCCceEEEEcCCcHHH
Confidence 666 88999999999 99999999986443322111111 1 124489999999984 55569999987 78
Q ss_pred HHHHHHHHhcccC-CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC-CcceEEeEecCC
Q 012095 321 VAACNKIQSQFTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QGAFYLFIDFST 398 (471)
Q Consensus 321 i~~l~~~~~~~~~-~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p-~~g~~~~~~~~~ 398 (471)
.+.+......... +++...+.++..++... ..+++++++++++++++++.+.|.+. |+++..+ ..++++|+.++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~ 328 (420)
T 3gbx_A 252 YKKLNSAVFPSAQGGPLMHVIAGKAVALKEA--MEPEFKVYQQQVAKNAKAMVEVFLNR-GYKVVSGGTENHLFLLDLVD 328 (420)
T ss_dssp HHHHHHHHC----CCCCHHHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGG
T ss_pred HHHhhhhcCCCCCCCcchhHHHHHHHHHHHH--HhHhHHHHHHHHHHHHHHHHHHHHhc-CCeeccCCCCCeEEEEEcCC
Confidence 8877765443322 34444444544455431 24677889999999999999999885 8887653 456678888764
Q ss_pred ccCCcccCCCCCCCHHHHHHHHHHcCCEEEEC-------CCCCCCCCcEEEEeec------CHHHHHHHHHHHHHHHHhh
Q 012095 399 YYGSEAEGFGKIENSESLCRYLLDKAQVALVP-------GDAFGDDTCIRISYAA------SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~p-------g~~f~~~~~iRis~~~------~~e~i~~~~~~l~~~l~~~ 465 (471)
.. .+...+.+.| +++||.+.| |..|+. +.+||++.. ++++++++++.|++++++.
T Consensus 329 ~~----------~~~~~~~~~l-~~~gi~v~~~~~~~~~~~~~~~-~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 396 (420)
T 3gbx_A 329 KN----------LTGKEADAAL-GRANITVNKNSVPNDPKSPFVT-SGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNI 396 (420)
T ss_dssp GT----------CCHHHHHHHH-HHTTEECEEECCTTCSSCTTTC-SEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CC----------CCHHHHHHHH-HHCCcEeccccCCCCccccCCC-cceEEecchhcccCCCHHHHHHHHHHHHHHHhCc
Confidence 21 1456666655 456999998 444443 459999874 4789999999999998764
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-30 Score=256.68 Aligned_cols=323 Identities=15% Similarity=0.221 Sum_probs=237.8
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHH
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~ 174 (471)
.++++|+.|.|++. + +.+++.+.+..+ .|++..+..++++.+++++. .+++++++|+++++..++++
T Consensus 6 ~~~~~l~~~~~~~~--~-~~~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~--------~~~~~~~~~gt~a~~~~~~~ 72 (374)
T 3uwc_A 6 VPYSYLERQFADIE--P-YLNDLREFIKTA--DFTLGAELEKFEKRFAALHN--------APHAIGVGTGTDALAMSFKM 72 (374)
T ss_dssp BCSCCHHHHTSSCH--H-HHHHHHHHHHHT--CCSSCHHHHHHHHHHHHHTT--------CSEEEEESCHHHHHHHHHHH
T ss_pred ceeeccccCCCCch--H-HHHHHHHHHHcC--CcccChhHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHH
Confidence 45778888887764 3 888888887663 57788889999999999862 24889999999999999999
Q ss_pred h-cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHH
Q 012095 175 V-CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 253 (471)
Q Consensus 175 l-~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i 253 (471)
+ +++||+|+++.|+|+++...++..|++++.++++ .++.+|++++++++++++++|+ |+||||...+ +++|
T Consensus 73 ~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~~~~~~~~v~---~~n~~G~~~~---~~~i 144 (374)
T 3uwc_A 73 LNIGAGDEVITCANTFIASVGAIVQAGATPVLVDSE--NGYVIDPEKIEAAITDKTKAIM---PVHYTGNIAD---MPAL 144 (374)
T ss_dssp TTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBC--TTSSBCGGGTGGGCCTTEEEEC---CBCGGGCCCC---HHHH
T ss_pred cCCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecC--CCCCcCHHHHHHhCCCCceEEE---EeCCcCCcCC---HHHH
Confidence 9 9999999999999999999999999999999987 4577999999999988888777 8999999998 8899
Q ss_pred HHHHHhCCCeEEEEccCCCccc-cCCCCccccccCCCCCCceEEEecCC--cccCccchhheeeEcC-HHHHHHHHHHHh
Q 012095 254 ARIVAKHPRLLVLSDEIYEHII-YAPATHTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAGP-KHFVAACNKIQS 329 (471)
Q Consensus 254 ~~l~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~g~~G~R~G~v~~~-~~~i~~l~~~~~ 329 (471)
.++|++| ++++|+||+|..+. +++. ....+ ..+++.||| |.++.+|. .||++++ +++++.+.....
T Consensus 145 ~~~~~~~-~~~li~D~~~~~g~~~~~~---~~~~~-----~d~~~~s~~~~K~l~~~g~-~g~~~~~~~~~~~~~~~~~~ 214 (374)
T 3uwc_A 145 AKIAKKH-NLHIVEDACQTILGRINDK---FVGSW-----GQFACFSLHPLKNLNVWSD-AGVIITHSDEYAEKLRLYRN 214 (374)
T ss_dssp HHHHHHT-TCEEEEECTTCTTCEETTE---ETTSS-----SSEEEEECSSSSSSCCSSC-CEEEEESCHHHHHHHHHHTB
T ss_pred HHHHHHc-CCEEEEeCCCccCceeCCe---ecccc-----ccEEEEeCCCCCcCCccce-eEEEEeCCHHHHHHHHHHHh
Confidence 9999999 99999999998643 2221 11111 247788877 99974364 8888875 567777776543
Q ss_pred c------------ccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCC-CeeeC-CCcceEEeEe
Q 012095 330 Q------------FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG-VKMSE-PQGAFYLFID 395 (471)
Q Consensus 330 ~------------~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g-~~~~~-p~~g~~~~~~ 395 (471)
. .+...+.+...+.... .+.+++..++.+++++++.+.|.++++ +.+.. +.++...|..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~aa~~~~~-------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 287 (374)
T 3uwc_A 215 HGLINRDVCVEYGINCRMDTIQAVIANRL-------MNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHI 287 (374)
T ss_dssp TTEEETTEESSCCCBCBCCHHHHHHHHHH-------GGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSS
T ss_pred cCccccCccccccccCCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEE
Confidence 1 1112233333222222 233566777778888899999998866 66532 2322222211
Q ss_pred cCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC-------------C----------CCcEEEEeec--CHHH
Q 012095 396 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-------------D----------DTCIRISYAA--SLTT 450 (471)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~-------------~----------~~~iRis~~~--~~e~ 450 (471)
++-.. .+..++.+.|.++ ||.+.+|.... . .+.+|+++.. ++++
T Consensus 288 ~~~~~----------~~~~~l~~~L~~~-gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~ed 356 (374)
T 3uwc_A 288 YVLRV----------KYRDQLFQYLKDN-GIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEE 356 (374)
T ss_dssp EEEEE----------TTHHHHHHHHHHT-TBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHH
T ss_pred EEEEc----------CCHHHHHHHHHHC-CCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHH
Confidence 11000 1567888888766 99999886110 0 1579999886 8999
Q ss_pred HHHHHHHHHHHHHhhC
Q 012095 451 LQAAVERIKKGLLTLR 466 (471)
Q Consensus 451 i~~~~~~l~~~l~~~~ 466 (471)
++++++.|++++++.+
T Consensus 357 i~~~~~~l~~~l~~~~ 372 (374)
T 3uwc_A 357 INYIIKKVREFYLEKH 372 (374)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999998754
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-30 Score=260.24 Aligned_cols=322 Identities=12% Similarity=0.030 Sum_probs=228.8
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHc--CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEE-eCChHHHHHHHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIRE--GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILV-SNGAKQSILQAV 172 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~--~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~i-t~G~~~al~~~~ 172 (471)
.+++++.|. .++|+.+++++.+.... +..++++ ...++.+.+.+.+++.+|.+ .+++|++ |+|+++++..++
T Consensus 40 ~~~~~~~~~--~~~~~~v~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~g~~-~~~~i~~~t~g~t~al~~~~ 114 (398)
T 2fyf_A 40 RDGRFGSGP--SKVRLEQLQTLTTTAAALFGTSHRQA--PVKNLVGRVRSGLAELFSLP-DGYEVILGNGGATAFWDAAA 114 (398)
T ss_dssp SSCBCCSSS--CCCCHHHHHGGGTTTTTTTTSCTTSH--HHHHHHHHHHHHHHHHTTCC-TTCEEEEEETCHHHHHHHHH
T ss_pred CCccccCCC--CCCCHHHHHHHhhcCCCccCcCcCCH--HHHHHHHHHHHHHHHHhCCC-CCceEEEeCCchhHHHHHHH
Confidence 456666553 34677888888763111 1112322 22456667777777777864 4579998 999999999999
Q ss_pred HHhcCCC-CeEEEcCCCCCC-hHHHHHHc--CCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHH
Q 012095 173 LAVCSPG-DEVIIPAPFWVS-YPEMARIA--DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKN 248 (471)
Q Consensus 173 ~~l~~~g-d~Vlv~~p~y~~-~~~~~~~~--G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~ 248 (471)
++++++| +.| ..+.|.. ....+... |++++.++++ .++..+. .+++++++|++++|+||||.+++.+
T Consensus 115 ~~l~~~gv~~v--~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~g~~~~~-----~i~~~~~~v~~~~~~nptG~~~~~~ 185 (398)
T 2fyf_A 115 FGLIDKRSLHL--TYGEFSAKFASAVSKNPFVGEPIIITSD--PGSAPEP-----QTDPSVDVIAWAHNETSTGVAVAVR 185 (398)
T ss_dssp HHTCSSCEEEE--ECSHHHHHHHHHHHHCTTSCCCEEEECC--TTCCCCC-----CCCTTCSEEEEESEETTTTEECCCC
T ss_pred HHhcCCCeEEE--eCCHHHHHHHHHHHHhCCCCceEEEecC--CCCCCCc-----cccCCCCEEEEeCcCCCcceecchH
Confidence 9999887 433 2333311 12245555 8888889886 3333332 2567899999999999999999955
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHH
Q 012095 249 LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 328 (471)
Q Consensus 249 ~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~ 328 (471)
++.+ + + +++||+|++|..+.. ...+ . +..+++.|+||.+|++| ++||+++++++++.+.+..
T Consensus 186 ~i~~---~---~-~~~vivD~a~~~~~~----~~~~---~---~~di~~~s~sK~~~~~g-g~g~l~~~~~~~~~l~~~~ 247 (398)
T 2fyf_A 186 RPEG---S---D-DALVVIDATSGAGGL----PVDI---A---ETDAYYFAPQKNFASDG-GLWLAIMSPAALSRIEAIA 247 (398)
T ss_dssp CCTT---C---C--CEEEEECTTTTTTS----CCCG---G---GCSEEEECTTSTTCSCS-SEEEEEECHHHHHHHHHHH
T ss_pred Hhhh---h---c-CCeEEEEeccccCCc----ccCc---c---cCcEEEEecCcccCCCC-ceEEEEECHHHHHHhhccc
Confidence 5544 3 7 899999999986432 1111 1 23488999999999775 6999999999988875431
Q ss_pred ---------------------hcccCCCChHHHHHHHHHHhccCCChHH--HHHHHHHHHHHHHHHHHHhcCCCCCeeeC
Q 012095 329 ---------------------SQFTSGASSISQKAGVAALGLGYAGGEV--VSKMVKAFRERRDFLVKSFGELEGVKMSE 385 (471)
Q Consensus 329 ---------------------~~~~~~~~~~~q~aa~~~L~~~~~~~~~--~~~~~~~~~~~r~~l~~~L~~~~g~~~~~ 385 (471)
.....+++...+.++.++|+. ..+. +++.+++++++++++.+.|++++|+++..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~ 324 (398)
T 2fyf_A 248 ATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDW---LVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFV 324 (398)
T ss_dssp HTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH---HHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESC
T ss_pred ccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHH---HHHccCHHHHHHHHHHHHHHHHHHHHHcCCceecc
Confidence 112235677777777777764 2333 78889999999999999999888888763
Q ss_pred --C--CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHH
Q 012095 386 --P--QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIK 459 (471)
Q Consensus 386 --p--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~ 459 (471)
| .+++++|++++.. .+..++.+.|.++ ||.+.+|..+..++++||+++. +++++++++++|+
T Consensus 325 ~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~L~~~-gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~ 392 (398)
T 2fyf_A 325 TDPGLRSQVVGTIDFVDD-----------VDAGTVAKILRAN-GIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVD 392 (398)
T ss_dssp CSGGGBCSSEEEEEECTT-----------SCHHHHHHHHHHT-TCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CChhhcCCcEEEEECCCC-----------CCHHHHHHHHHHC-CcEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHH
Confidence 4 3566889998643 2678899998877 9999987433235799999995 8999999999999
Q ss_pred HHHHh
Q 012095 460 KGLLT 464 (471)
Q Consensus 460 ~~l~~ 464 (471)
+++++
T Consensus 393 ~~l~~ 397 (398)
T 2fyf_A 393 WVVER 397 (398)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 98865
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=257.52 Aligned_cols=360 Identities=14% Similarity=0.104 Sum_probs=233.7
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCC-CCC-----CCCCCCHHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGF-TRY-----TPNAGTLELRSAI 141 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~-~~Y-----~~~~G~~~lr~~i 141 (471)
+++++..+.++....+.+..... .+.++|..+++.. |+.+.+++.+++.+.. .+| .+.....++.+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~~~--~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (425)
T 3ecd_A 9 FSQSLAERDASVRGAILKELERQ----QSQVELIASENIV--SRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEAL 82 (425)
T ss_dssp HHCCHHHHCHHHHHHHHHHHHHH----HHSEECCTTCCCC--CHHHHHHHTSGGGSSCTTC------------CCHHHHH
T ss_pred HHHHHHhhCHHHHHHHHHHHHHH----hcceeeecccCCC--CHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHH
Confidence 45566777666444433322221 2468888887655 8889999988774321 122 1111222244444
Q ss_pred H-HHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCC---hHHHHHHcCC--EEEEecCCCCCCCc
Q 012095 142 C-HKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS---YPEMARIADA--TPVILPTRISENFL 215 (471)
Q Consensus 142 a-~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~---~~~~~~~~G~--~~~~v~~~~~~~~~ 215 (471)
+ +++.+.+|. + ...++++|+++++..++++++++||+|++++|+|.+ +.......|. +++.++.++ +++.
T Consensus 83 a~~~~~~~~~~--~-~~~v~~~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~ 158 (425)
T 3ecd_A 83 AIERVKRLFNA--G-HANVQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSR-DTML 158 (425)
T ss_dssp HHHHHHHHHTC--S-EEECCCSSHHHHHHHHHHHHCCTTCEEEEECC------------------CEEEEECCCT-TTSS
T ss_pred HHHHHHHHhCC--C-CceeecCchHHHHHHHHHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCCc-ccCc
Confidence 4 666666663 2 233458888899999999999999999999999988 3333334455 556666653 4578
Q ss_pred CCHHHHHhhhc-cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCc-cccCCCCccccccCCCCCCc
Q 012095 216 LDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWER 293 (471)
Q Consensus 216 ld~e~l~~~l~-~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~~ 293 (471)
+|+++|+++++ +++++|++++|+||+ ..+ +++|.++|++| |++||+||+|.. +.+.+.. ..... ..
T Consensus 159 ~d~~~l~~~i~~~~~~~v~~~~~~~~~--~~~---l~~i~~l~~~~-~~~li~De~~~~g~~~~~~~-~~~~~-----~~ 226 (425)
T 3ecd_A 159 IDYDQVEALAQQHKPSLIIAGFSAYPR--KLD---FARFRAIADSV-GAKLMVDMAHIAGVIAAGRH-ANPVE-----HA 226 (425)
T ss_dssp CCHHHHHHHHHHHCCSEEEEECSCCCS--CCC---HHHHHHHHHHH-TCEEEEECGGGHHHHHTTSS-CCGGG-----TC
T ss_pred cCHHHHHHHHhhcCCcEEEEccccCCC--cCC---HHHHHHHHHHc-CCEEEEECcChHhhhhcccc-cCchh-----cC
Confidence 99999999996 589999999999964 455 78999999999 999999999643 3333321 11111 12
Q ss_pred eEEEecCCcccCccchhheeeEcC-HHHHHHHHHHHhcccC-CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHH
Q 012095 294 TLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 371 (471)
Q Consensus 294 ~i~~~S~SK~~g~~G~R~G~v~~~-~~~i~~l~~~~~~~~~-~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l 371 (471)
.+++.||||.+ +|+|+||++++ +++.+.+......... +++...+.++..++... ..+++++.+++++++++++
T Consensus 227 di~~~s~sK~l--~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~--~~~~~~~~~~~~~~~~~~l 302 (425)
T 3ecd_A 227 HVVTSTTHKTL--RGPRGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEA--LTDDFKTYIDRVLANAQAL 302 (425)
T ss_dssp SEEEEESSGGG--CCCSCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCccc--CCCCcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHH
Confidence 38899999997 67899999998 5677777665433322 34444444444444321 2467788899999999999
Q ss_pred HHHhcCCCCCeeeCC-CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEE----CCCCCC--CCCcEEEEe
Q 012095 372 VKSFGELEGVKMSEP-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV----PGDAFG--DDTCIRISY 444 (471)
Q Consensus 372 ~~~L~~~~g~~~~~p-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~----pg~~f~--~~~~iRis~ 444 (471)
.+.|.+. |+++..+ .+++++|+.++... .+...+.+.| +++||.+. ||..+. .++++|+++
T Consensus 303 ~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l-~~~gi~v~~~~~p~~~~~~~~~~~iRi~~ 370 (425)
T 3ecd_A 303 GDVLKAG-GVDLVTGGTDNHLLLVDLRPKG----------LKGAQVEQAL-ERAGITCNKNGIPFDPEKPTITSGIRLGT 370 (425)
T ss_dssp HHHHHHT-TCEEGGGSCSSSEEEEECGGGT----------CCHHHHHHHH-HHTTEECEECCCTTCSSCTTTCSEEEEES
T ss_pred HHHHHhC-CCeeccCCCCceEEEEEeCCCC----------CCHHHHHHHH-HHcCCEecccccCCCCCCCCCccceeccc
Confidence 9999886 8887654 46777888876421 1456666665 45599999 543222 246899985
Q ss_pred ec------CHHHHHHHHHHHHHHHHhh
Q 012095 445 AA------SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 445 ~~------~~e~i~~~~~~l~~~l~~~ 465 (471)
.. ++++++++++.|++++++.
T Consensus 371 ~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 371 PAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 53 4799999999999998765
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-29 Score=250.28 Aligned_cols=311 Identities=15% Similarity=0.146 Sum_probs=234.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh---cCCCCeEEEc
Q 012095 109 TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV---CSPGDEVIIP 185 (471)
Q Consensus 109 ~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l---~~~gd~Vlv~ 185 (471)
+|+.+.+++.+.+..+ .|.+..+..++++.+++++ |. +++++|+|+++++..+++++ +++||+|+++
T Consensus 11 ~~~~v~~a~~~~~~~~--~~~~~~~~~~l~~~la~~~----~~----~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~ 80 (375)
T 2fnu_A 11 LDKEDKKAVLEVLNSK--QLTQGKRSLLFEEALCEFL----GV----KHALVFNSATSALLTLYRNFSEFSADRNEIITT 80 (375)
T ss_dssp CCHHHHHHHHHHHTSS--CCSSSHHHHHHHHHHHHHH----TC----SEEEEESCHHHHHHHHHHHSSCCCTTSCEEEEC
T ss_pred CCHHHHHHHHHHHHcC--cccCChHHHHHHHHHHHHh----CC----CeEEEeCCHHHHHHHHHHHhcccCCCCCEEEEC
Confidence 5788999999988653 3445566788888888886 32 28999999999999999999 8999999999
Q ss_pred CCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEE
Q 012095 186 APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 265 (471)
Q Consensus 186 ~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~i 265 (471)
+|+|+++...++..|++++.++++.++ .+|++++++++++++++|++++| ||.+.+ +++|.++|++| +++|
T Consensus 81 ~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~---l~~i~~l~~~~-~~~l 151 (375)
T 2fnu_A 81 PISFVATANMLLESGYTPVFAGIKNDG--NIDELALEKLINERTKAIVSVDY---AGKSVE---VESVQKLCKKH-SLSF 151 (375)
T ss_dssp SSSCTHHHHHHHHTTCEEEECCBCTTS--SBCGGGSGGGCCTTEEEEEEECG---GGCCCC---HHHHHHHHHHH-TCEE
T ss_pred CCccHhHHHHHHHCCCEEEEeccCCCC--CCCHHHHHhhcCcCceEEEEeCC---cCCccC---HHHHHHHHHHc-CCEE
Confidence 999999999999999999999987543 68999999999888998888776 999999 88999999999 9999
Q ss_pred EEccCCCccccCCCCccccccCCCCCCceEEEecCC--cccCccchhheeeEc-C-HHHHHHHHHHHhccc---------
Q 012095 266 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAG-P-KHFVAACNKIQSQFT--------- 332 (471)
Q Consensus 266 i~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~g~~G~R~G~v~~-~-~~~i~~l~~~~~~~~--------- 332 (471)
|+||+|..+..... ..+.. .+ .+.+.||| |.+|. | +|++++ + +++++.+........
T Consensus 152 i~D~a~~~~~~~~~-----~~~~~-~~-~i~~~s~s~~K~~~~-g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (375)
T 2fnu_A 152 LSDSSHALGSEYQN-----KKVGG-FA-LASVFSFHAIKPITT-A--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGE 221 (375)
T ss_dssp EEECTTCTTCEETT-----EETTS-SS-SEEEEECCTTSSSCC-S--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEE
T ss_pred EEECccccCCeECC-----eeccc-cC-CeEEEeCCCCCCccc-c--CceEEEeCCHHHHHHHHHHHhcCCccccccccc
Confidence 99999986432211 11211 12 38888999 99974 6 788887 4 778888876542111
Q ss_pred -------CCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC----Cc-ceEEeEecCCcc
Q 012095 333 -------SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP----QG-AFYLFIDFSTYY 400 (471)
Q Consensus 333 -------~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p----~~-g~~~~~~~~~~~ 400 (471)
+..+.+...++... .+++++..++++++++++.+.|++++|+++..+ .+ ++++|+.++..
T Consensus 222 ~~~~~~~~~~~~~~~a~~~~~-------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 293 (375)
T 2fnu_A 222 VKSIGHNFRLNEIQSALGLSQ-------LKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQK- 293 (375)
T ss_dssp ESSCCCBCCCCHHHHHHHHHH-------HTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGG-
T ss_pred cccccccCCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCcc-
Confidence 12333333222222 234667888889999999999999888887655 23 34457777631
Q ss_pred CCcccCCCCCC-CHHHHHHHHHHcCCEEEECCCC-------CC-------C-------CCcEEEEeec--CHHHHHHHHH
Q 012095 401 GSEAEGFGKIE-NSESLCRYLLDKAQVALVPGDA-------FG-------D-------DTCIRISYAA--SLTTLQAAVE 456 (471)
Q Consensus 401 ~~~~~~~~~~~-~~~~l~~~Ll~~~gV~v~pg~~-------f~-------~-------~~~iRis~~~--~~e~i~~~~~ 456 (471)
+ . +..++.+.|.++ ||.+..+.. |+ . .+++||+++. ++++++++++
T Consensus 294 ~---------~~~~~~l~~~L~~~-gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~ 363 (375)
T 2fnu_A 294 F---------FTCKKLILESLHKR-GILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAH 363 (375)
T ss_dssp G---------GGGHHHHHHHHHHT-TEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHH
T ss_pred c---------cchHHHHHHHHHHC-CCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHH
Confidence 0 1 456788888665 999884221 11 1 1579999996 8999999999
Q ss_pred HHHHHHHhhC
Q 012095 457 RIKKGLLTLR 466 (471)
Q Consensus 457 ~l~~~l~~~~ 466 (471)
+|++++++++
T Consensus 364 ~l~~~~~~~~ 373 (375)
T 2fnu_A 364 SVLKTFESFK 373 (375)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 9999988765
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-30 Score=262.56 Aligned_cols=343 Identities=14% Similarity=0.129 Sum_probs=229.3
Q ss_pred cCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+++||++.|.+ .++. |+.+.+++.+++.+.. .|+. ..+++.++++++.+.++ .+++|++++|+++++.
T Consensus 50 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~---~~~~~~~la~~l~~~~~---~~~~v~~~~ggsea~~ 122 (427)
T 3fq8_A 50 DGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGT-SFGA---PCALENVLAEMVNDAVP---SIEMVRFVNSGTEACM 122 (427)
T ss_dssp TSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCS-CCSS---CCHHHHHHHHHHHHHST---TCSEEEEESSHHHHHH
T ss_pred CCCEEEECCCchhhhccCCCCHHHHHHHHHHHHhCC-CcCC---CCHHHHHHHHHHHHhCC---CCCEEEEeCCHHHHHH
Confidence 5778999999873 4443 8899999999887643 3432 45778888888887776 5789999999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCChHHHHHHc-CC-------------------EEEEecCCCCCCCcCCHHHHHhhhcc
Q 012095 170 QAVLAVC--SPGDEVIIPAPFWVSYPEMARIA-DA-------------------TPVILPTRISENFLLDPKVLESKLTE 227 (471)
Q Consensus 170 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-G~-------------------~~~~v~~~~~~~~~ld~e~l~~~l~~ 227 (471)
.+++... ..++.|++.+|+|+++...+... |. .++.++.+ |+++|++++++
T Consensus 123 ~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~le~~l~~ 195 (427)
T 3fq8_A 123 AVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN-------DLEAVKALFAE 195 (427)
T ss_dssp HHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-------CHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC-------CHHHHHHHHHh
Confidence 9885432 23478999999998755332222 11 12223221 89999999875
Q ss_pred ---CCcEEEEcCCCCCcccCCC-HHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcc
Q 012095 228 ---KSRLLILCSPSNPTGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 303 (471)
Q Consensus 228 ---~~~~i~i~~p~NPtG~~~~-~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 303 (471)
++++|+++.++|++|.+.+ ++++++|.++|++| |++||+||+|.++ ..+.. ....... ....+.||||.
T Consensus 196 ~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~DEv~~g~-~~g~~-~~~~~~~----~~~di~t~sK~ 268 (427)
T 3fq8_A 196 NPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEH-DALLVFDEVITGF-RIAYG-GVQEKFG----VTPDLTTLGKI 268 (427)
T ss_dssp STTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHT-TCEEEEECTTTBT-TTBTT-HHHHHTT----CCCSEEEECGG
T ss_pred CCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEecccccc-ccCcc-hhhHhcC----CCCChhhhhhh
Confidence 5566666666778886665 66699999999999 9999999999987 44321 1111111 11125689999
Q ss_pred cCccchhheeeEcCHHHHHHHHHHH---hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 012095 304 FAMTGWRLGYIAGPKHFVAACNKIQ---SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 380 (471)
Q Consensus 304 ~g~~G~R~G~v~~~~~~i~~l~~~~---~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g 380 (471)
++ +|+|+||+++++++++.+.... ...+++.+++++.++.++|+.... +++.++.++..+..++.+.+.+.++ +
T Consensus 269 ~~-~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~-~ 345 (427)
T 3fq8_A 269 IG-GGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ-PGTYEYLDQITKRLSDGLLAIAQET-G 345 (427)
T ss_dssp GG-TTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred hh-CCcceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhC-C
Confidence 98 8999999999999998876432 234556799999999998874221 3333443333333344444433333 3
Q ss_pred CeeeCCCcceEEeEecCCccCCc--ccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHH
Q 012095 381 VKMSEPQGAFYLFIDFSTYYGSE--AEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERI 458 (471)
Q Consensus 381 ~~~~~p~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l 458 (471)
+....+..|+++|+.++...... ...........++++.|+++ ||.+.|+.. ..+|+++..+++++++++++|
T Consensus 346 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-Gi~v~~~~~----~r~~~~~~~t~e~i~~~l~~l 420 (427)
T 3fq8_A 346 HAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQ-GIYLAPSQF----EAGFTSLAHTEEDIDATLAAA 420 (427)
T ss_dssp CCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHT-TEECCSSTT----SCEECCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHC-CcEEecCCC----CCEEeeCcCCHHHHHHHHHHH
Confidence 33223445667888876421000 00000000135788888876 999999763 356777777999999999999
Q ss_pred HHHHHh
Q 012095 459 KKGLLT 464 (471)
Q Consensus 459 ~~~l~~ 464 (471)
++++++
T Consensus 421 ~~~l~~ 426 (427)
T 3fq8_A 421 RTVMSA 426 (427)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=257.42 Aligned_cols=359 Identities=12% Similarity=0.007 Sum_probs=253.2
Q ss_pred HHHHHHHHHH-hcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC---Cc
Q 012095 82 AITDQATALA-QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP---DQ 157 (471)
Q Consensus 82 ~~~~~~~~~~-~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~---~~ 157 (471)
++.+....+. ..+...+++....+ ..+++.+.+++.+++..+..+|...++..++++.+.+++.+.+|.+.+. ..
T Consensus 27 ~v~~~~~~~~~~~~~~~~~~~~f~~-~~~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~ 105 (452)
T 2dgk_A 27 VAFQIINDELYLDGNARQNLATFCQ-TWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAV 105 (452)
T ss_dssp HHHHHHHHHGGGSCCCTTBCSCCSC-CCCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCE
T ss_pred HHHHHHHHHhcCCCCCccCCCCeeC-CCchHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCc
Confidence 4444444433 34433334444333 2345778888888876655667677788899999999999999965332 24
Q ss_pred EEEeCChHHHHHHHHHHhcC--------CC-----CeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhh
Q 012095 158 ILVSNGAKQSILQAVLAVCS--------PG-----DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESK 224 (471)
Q Consensus 158 i~it~G~~~al~~~~~~l~~--------~g-----d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~ 224 (471)
+++|+|+++++..++.++++ +| ++|++++ +|..+...++..|++++.||+++ ++|.+|+++|+++
T Consensus 106 ~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~~-~~~~~d~~~l~~~ 183 (452)
T 2dgk_A 106 GTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRP-GQLFMDPKRMIEA 183 (452)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCCBT-TBCSCCHHHHHHH
T ss_pred eEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEEecCC-CCCeECHHHHHHH
Confidence 99999999999999888764 55 5899999 99999999999999999999874 3588999999999
Q ss_pred hccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHh------CCCeEEEEccCCCcccc---CCCCccccccCCCCCCceE
Q 012095 225 LTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK------HPRLLVLSDEIYEHIIY---APATHTSFASLPGMWERTL 295 (471)
Q Consensus 225 l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~------~~~~~ii~De~y~~~~~---~~~~~~~~~~~~~~~~~~i 295 (471)
+++++++|++++|+||||.+.+ +++|.++|++ + ++++++|++|..+.. .+... ..+. ..+-.+
T Consensus 184 i~~~t~~v~~~~~~n~tG~~~~---l~~I~~ia~~~~~~~~~-~~~l~vD~a~~~~~~~~~~~~~~---~~~~-~~~~d~ 255 (452)
T 2dgk_A 184 CDENTIGVVPTFGVTYTGNYEF---PQPLHDALDKFQADTGI-DIDMHIDAASGGFLAPFVAPDIV---WDFR-LPRVKS 255 (452)
T ss_dssp CCTTEEEEECBBSCTTTCBBCC---HHHHHHHHHHHHHHHCC-CCCEEEECTTGGGTHHHHCTTCC---CSTT-STTEEE
T ss_pred HhhCCEEEEEEcCCcCCcccCC---HHHHHHHHHHHhhccCC-CCcEEEEcccHHHHHHhhCccch---hhcC-CCCCcE
Confidence 9989999999999999999998 8889999998 5 899999999998653 22111 1111 123445
Q ss_pred EEecCCcccCccchhheeeEcCH-HHH-HHHHHHHhcc---------cCCC---ChHHHHHHHHHHhccCCChHHHHHHH
Q 012095 296 TVNGFSKAFAMTGWRLGYIAGPK-HFV-AACNKIQSQF---------TSGA---SSISQKAGVAALGLGYAGGEVVSKMV 361 (471)
Q Consensus 296 ~~~S~SK~~g~~G~R~G~v~~~~-~~i-~~l~~~~~~~---------~~~~---~~~~q~aa~~~L~~~~~~~~~~~~~~ 361 (471)
++.|++|. +++|+++||+++++ +++ +.+....... ..+. ..+.+.++...+. .+.++++.
T Consensus 256 ~~~~~hK~-~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg-----~~g~~~~~ 329 (452)
T 2dgk_A 256 ISASGHKF-GLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG-----REGYTKVQ 329 (452)
T ss_dssp EEEETTTT-TCCCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH-----HHHHHHHH
T ss_pred EEECcccc-cCCCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHh-----HHHHHHHH
Confidence 77788995 56899999999854 333 4331100100 0111 3344555554443 45678889
Q ss_pred HHHHHHHHHHHHHhcCCCCCeeeCC-----CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC---C
Q 012095 362 KAFRERRDFLVKSFGELEGVKMSEP-----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD---A 433 (471)
Q Consensus 362 ~~~~~~r~~l~~~L~~~~g~~~~~p-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~---~ 433 (471)
+++.++++++.+.|++++|+++..| ..++ +.++++.... ...+..++.+.|.++ ||.+.... .
T Consensus 330 ~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~-v~f~~~~~~~-------~~~~~~~l~~~L~~~-Gi~v~~~~~~~~ 400 (452)
T 2dgk_A 330 NASYQVAAYLADEIAKLGPYEFICTGRPDEGIPA-VCFKLKDGED-------PGYTLYDLSERLRLR-GWQVPAFTLGGE 400 (452)
T ss_dssp HHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSE-EEEEECTTCC-------CSCCHHHHHHHHHHT-TCBCCEEECSTT
T ss_pred HHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEE-EEEEecCccc-------ccCCHHHHHHHHHhc-CCeeeeeeCCcc
Confidence 9999999999999999978887643 3444 5556653100 001457899988876 88543211 1
Q ss_pred CCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012095 434 FGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 434 f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~~ 466 (471)
....+++|++++. ++++++++++.|++++++++
T Consensus 401 ~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~~~ 435 (452)
T 2dgk_A 401 ATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLS 435 (452)
T ss_dssp CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1124589999987 78999999999999887653
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-30 Score=264.10 Aligned_cols=336 Identities=13% Similarity=0.120 Sum_probs=220.7
Q ss_pred cCCCeEEcCCCCCC--CC-ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGEPD--FD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~~~--~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.+|||+.|.+. ++ .|+.+.+++.+++..+. .| .+..++++++++++.+.++ .+++|++|+|+++++.
T Consensus 55 ~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~-~~---~~~~~~~~~la~~l~~~~~---~~~~v~~~~gg~eA~~ 127 (453)
T 2cy8_A 55 DGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGV-QY---AASHPLEVRWAERIVAAFP---SIRKLRFTGSGTETTL 127 (453)
T ss_dssp TCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTC-SS---CSSCHHHHHHHHHHHHHCT---TCSEEEEESCHHHHHH
T ss_pred CCCEEEECcccHhhcccCCCCHHHHHHHHHHHHhCC-CC---CCCCHHHHHHHHHHHhhCC---CCCEEEEeCCHHHHHH
Confidence 46779999999733 33 57899999999886632 33 2457899999999988765 5689999999999999
Q ss_pred HHHHH---hcCCCCeEEEcCCCCCChHHHHHH-----------cCCE------EEEecCCCCCCCcCCHHHHHhhhcc--
Q 012095 170 QAVLA---VCSPGDEVIIPAPFWVSYPEMARI-----------ADAT------PVILPTRISENFLLDPKVLESKLTE-- 227 (471)
Q Consensus 170 ~~~~~---l~~~gd~Vlv~~p~y~~~~~~~~~-----------~G~~------~~~v~~~~~~~~~ld~e~l~~~l~~-- 227 (471)
.++++ +.++ +.|++.+|+|+++...+.. .|.. ++.++. .|+++|++++++
T Consensus 128 ~al~~ar~~~~~-~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~~~ 199 (453)
T 2cy8_A 128 LALRVARAFTGR-RMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-------DDIEGMREVFANHG 199 (453)
T ss_dssp HHHHHHHHHHCC-CEEEEECC----------------------------CGGGEEEECT-------TCHHHHHHHHHHHG
T ss_pred HHHHHHHHhhCC-CEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-------CCHHHHHHHHHhcC
Confidence 99887 6654 6788888999876653322 1221 223332 389999998863
Q ss_pred -CCcEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccC
Q 012095 228 -KSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305 (471)
Q Consensus 228 -~~~~i~i~~p~NPtG~~-~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 305 (471)
++++|+++..+||||.+ .+++++++|.++|++| |++||+||+|.++ ..+. ...+..... ... +.||||.++
T Consensus 200 ~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~-g~~lI~DEv~~g~-~~g~-~~~~~~~~~-~~d---i~s~sK~l~ 272 (453)
T 2cy8_A 200 SDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQY-GALFILDEVISGF-RVGN-HGMQALLDV-QPD---LTCLAKASA 272 (453)
T ss_dssp GGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHT-TCEEEEECTTTTT-TTCT-THHHHHHTC-CCS---EEEEEGGGG
T ss_pred CCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEecCcccc-ccCc-hhhhHHhCC-CCc---EEEEChhhh
Confidence 55555444445789975 5799999999999999 9999999999977 4332 111111111 111 348999998
Q ss_pred ccchhheeeEcCHHHHHHHHH-----HHhcccCCCChHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHHHhcCC-
Q 012095 306 MTGWRLGYIAGPKHFVAACNK-----IQSQFTSGASSISQKAGVAALGL-GYAGGEVVSKMVKAFRERRDFLVKSFGEL- 378 (471)
Q Consensus 306 ~~G~R~G~v~~~~~~i~~l~~-----~~~~~~~~~~~~~q~aa~~~L~~-~~~~~~~~~~~~~~~~~~r~~l~~~L~~~- 378 (471)
+|+|+||+++++++++.+.. .....+++.+++++.++.++|+. . .+++.++++++++++.+.|+++
T Consensus 273 -~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~------~~~~~~~~~~~~~~l~~~L~~~~ 345 (453)
T 2cy8_A 273 -GGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL------EDDVCAKINDLGQFAREAMNHLF 345 (453)
T ss_dssp -TTSSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH------HTTHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999887654 12233567899999998888873 2 1234455566666666666543
Q ss_pred --CCCe-eeCCCcceEEeEecCC-----c--c-CCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecC
Q 012095 379 --EGVK-MSEPQGAFYLFIDFST-----Y--Y-GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAAS 447 (471)
Q Consensus 379 --~g~~-~~~p~~g~~~~~~~~~-----~--~-~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~ 447 (471)
.++. ..++.| .++|+.+++ . . +..........+..++++.|+++ ||.+.|+ +.+|+++..+
T Consensus 346 ~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-Gv~v~~~------~~~~l~~~~t 417 (453)
T 2cy8_A 346 ARKGLNWLAYGRF-SGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILE-GVDIGGR------GSVFLSAQHE 417 (453)
T ss_dssp HHTTCCEEEECCT-TEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHT-TEECBTT------TEEECCTTCC
T ss_pred hhCCCcEEEEEee-eEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHC-CeEEeCC------CCEEeeccCC
Confidence 1332 234444 467888864 1 0 00000000000256788888875 9999653 2478887779
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 012095 448 LTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 448 ~e~i~~~~~~l~~~l~~~ 465 (471)
++++++++++|+++++++
T Consensus 418 ~~~i~~~l~~l~~~l~~~ 435 (453)
T 2cy8_A 418 REHVEHLVTTFDRVLDRL 435 (453)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998765
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=265.14 Aligned_cols=337 Identities=10% Similarity=0.089 Sum_probs=238.0
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHH-H-HHHH---HHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCCh
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIA-E-AGIN---AIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 164 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~-~-a~~~---~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~ 164 (471)
.|+.++|+..|. .+++. ++.+. + ++.+ ++.+.. .|+ ..+..+.+..+++.+.+.++. ..+++|++|+|+
T Consensus 52 ~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~-~~~-~~~~~~~~~~la~~la~~~~~-~~~~~v~~~~~g 128 (449)
T 2cjg_A 52 TGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNK-PSN-SDVYSVAMARFVETFARVLGD-PALPHLFFVEGG 128 (449)
T ss_dssp TCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCC-CCT-TTCCCHHHHHHHHHHHHHHCC-TTCCEEEEESSH
T ss_pred CCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcC-CCC-cccCCHHHHHHHHHHHHhcCC-CCCCEEEEeCch
Confidence 467789998776 34553 78899 8 9999 776542 343 234556677777777777762 367899999999
Q ss_pred HHHHHHHHHHhc---C----------C-CCeEEEcCCCCCChHHHHHH-cC--------C-----EEEEecCCCCCCC--
Q 012095 165 KQSILQAVLAVC---S----------P-GDEVIIPAPFWVSYPEMARI-AD--------A-----TPVILPTRISENF-- 214 (471)
Q Consensus 165 ~~al~~~~~~l~---~----------~-gd~Vlv~~p~y~~~~~~~~~-~G--------~-----~~~~v~~~~~~~~-- 214 (471)
++++..+++.+. . + ||.|++.+|+|+++...+.. .| . .++.+|.+.....
T Consensus 129 seA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 208 (449)
T 2cjg_A 129 ALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEP 208 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHH
T ss_pred HHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhcc
Confidence 999999887543 2 2 89999999999986543222 22 1 4566665420011
Q ss_pred ------cCCHHHHHhhhc---cCCcEEEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCcccc
Q 012095 215 ------LLDPKVLESKLT---EKSRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF 284 (471)
Q Consensus 215 ------~ld~e~l~~~l~---~~~~~i~i~~p~NPtG-~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~ 284 (471)
..++++|+++++ +++++|+++.++|||| .+++++++++|.++|++| |+++|+||+|.++.+.|.. ..+
T Consensus 209 ~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-g~lli~DEv~~g~g~~g~~-~~~ 286 (449)
T 2cjg_A 209 AMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEF-DALLIFDEVQTGCGLTGTA-WAY 286 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSS-STH
T ss_pred ccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHC-CcEEEEeccccCCCccCcc-eee
Confidence 246677888885 4566666555579999 599999999999999999 9999999999987655431 111
Q ss_pred ccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHH-----HHHHhcccCCCChHHHHHHHHHHhccCCChHHHHH
Q 012095 285 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC-----NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 359 (471)
Q Consensus 285 ~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l-----~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~ 359 (471)
..... ... +.||||.+ |+||+++++++++.+ .......+++.++++|.++.++|+. ..+ ++
T Consensus 287 ~~~~~-~~d---i~t~sK~l-----~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~---~~~--~~ 352 (449)
T 2cjg_A 287 QQLDV-APD---IVAFGKKT-----QVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEV---IEA--EG 352 (449)
T ss_dssp HHHTC-CCS---EEEECGGG-----SSEEEEECGGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHH---HHH--HT
T ss_pred cccCC-Cce---EEEecCcc-----cEEEEEECHHHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHH---HHh--cc
Confidence 11111 112 34799987 799999999988752 2222335677899999999999874 122 34
Q ss_pred HHHHHHHHHHHHHHHhcC----CCC-CeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC
Q 012095 360 MVKAFRERRDFLVKSFGE----LEG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 434 (471)
Q Consensus 360 ~~~~~~~~r~~l~~~L~~----~~g-~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f 434 (471)
+.++++++++++.+.|++ +++ +....+.|.| ++++++.. .+..++++.|+++ ||.+.|+.
T Consensus 353 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~-~~~~~~~~-----------~~~~~~~~~l~~~-Gv~v~~~g-- 417 (449)
T 2cjg_A 353 LFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLM-CAFSLPTT-----------ADRDELIRQLWQR-AVIVLPAG-- 417 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTE-EEEECSSH-----------HHHHHHHHHHHHT-TEECEEET--
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEE-EEEEECCh-----------HHHHHHHHHHHHC-CeEEecCC--
Confidence 566777788888887765 344 5555666665 56788642 1356899999875 99999973
Q ss_pred CCCCcEEEEee--cCHHHHHHHHHHHHHHHHhh
Q 012095 435 GDDTCIRISYA--ASLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 435 ~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~~ 465 (471)
++++|++++ .+++++++++++|+++++++
T Consensus 418 --~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 418 --ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp --TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred --CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 579999765 49999999999999998764
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=252.58 Aligned_cols=320 Identities=18% Similarity=0.246 Sum_probs=232.3
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCC-CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHH
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYT-PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 173 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~-~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~ 173 (471)
.++++|..|.|.++ +.+.+++.+.+..+ .|+ +..+..+|++.++++++ .+++++++|+++++..++.
T Consensus 22 ~~~~~l~~~~p~~~--~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~la~~~~--------~~~~i~~~~gt~al~~~l~ 89 (391)
T 3dr4_A 22 SDLPRISVAAPRLD--GNERDYVLECMDTT--WISSVGRFIVEFEKAFADYCG--------VKHAIACNNGTTALHLALV 89 (391)
T ss_dssp ------CCCCCCCC--SSHHHHHHHHHHHT--CCSSCSHHHHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHH
T ss_pred CCCceeccCCCCCC--HHHHHHHHHHHHcC--CccCCChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHH
Confidence 35889999998764 67788888877663 454 67788999999999973 2388899999999999999
Q ss_pred Hh-cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHH
Q 012095 174 AV-CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 252 (471)
Q Consensus 174 ~l-~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~ 252 (471)
++ +++||+|++++|+|.++...++..|++++.+++++ +++.+|++++++++++++++|+ |+||||...+ +++
T Consensus 90 ~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~~~~~~~~v~---~~n~tG~~~~---~~~ 162 (391)
T 3dr4_A 90 AMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDP-RTFNLDAAKLEALITPRTKAIM---PVHLYGQICD---MDP 162 (391)
T ss_dssp HHTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCT-TTCSBCGGGSGGGCCTTEEEEC---CBCGGGCCCC---HHH
T ss_pred HcCCCCcCEEEECCCchHHHHHHHHHCCCEEEEEecCc-cccCcCHHHHHHhcCCCceEEE---EECCCCChhh---HHH
Confidence 99 89999999999999999999999999999999875 3578999999999988888777 5789999988 889
Q ss_pred HHHHHHhCCCeEEEEccCCCccc-cCCCCccccccCCCCCCceEEEecCC--cccCccchhheeeEcC-HHHHHHHHHHH
Q 012095 253 IARIVAKHPRLLVLSDEIYEHII-YAPATHTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAGP-KHFVAACNKIQ 328 (471)
Q Consensus 253 i~~l~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~g~~G~R~G~v~~~-~~~i~~l~~~~ 328 (471)
|.++|++| +++||+|++|..+. +.+. ....+. .+.+.||| |.+ +|.+.||++++ +++++.+....
T Consensus 163 i~~l~~~~-~~~li~D~a~~~g~~~~~~---~~~~~~-----di~~~S~s~~K~l--~~g~gg~~~~~~~~~~~~~~~~~ 231 (391)
T 3dr4_A 163 ILEVARRH-NLLVIEDAAEAVGATYRGK---KSGSLG-----DCATFSFFGNAII--TTGEGGMITTNDDDLAAKMRLLR 231 (391)
T ss_dssp HHHHHHHT-TCEEEEECTTCTTCEETTE---ETTSSS-----SEEEEECBTTSSS--CCBSCEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHc-CCEEEEECcccccceECCe---eecccC-----CEEEEECCCCCcC--CcCCeEEEEECCHHHHHHHHHHH
Confidence 99999999 99999999998633 2221 111111 27788877 666 45678998875 55777777654
Q ss_pred hccc--------------CCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC------Cc
Q 012095 329 SQFT--------------SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP------QG 388 (471)
Q Consensus 329 ~~~~--------------~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p------~~ 388 (471)
.... +..+.+...++... ...+++..++.+++++++.+.|.++ |+.+..+ ..
T Consensus 232 ~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~-------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~ 303 (391)
T 3dr4_A 232 GQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQ-------LERVDEHLAARERVVGWYEQKLARL-GNRVTKPHVALTGRH 303 (391)
T ss_dssp BTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHH-------HHTHHHHHHHHHHHHHHHHHHHGGG-TTSEECCCCCTTSCC
T ss_pred hcCCCCCCcccccccccccCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhcC-CccccCcCCCCCCcc
Confidence 3211 22333333222222 2335666777788888889999888 8776554 22
Q ss_pred ce-EEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC-------C-------------CCCcEEEEeec-
Q 012095 389 AF-YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF-------G-------------DDTCIRISYAA- 446 (471)
Q Consensus 389 g~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f-------~-------------~~~~iRis~~~- 446 (471)
++ .+++.++...+ .+..++.+.|.++ ||.+.+|... . ....+|+++..
T Consensus 304 ~~~~~~i~~~~~~~---------~~~~~l~~~L~~~-GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~ 373 (391)
T 3dr4_A 304 VFWMYTVRLGEGLS---------TTRDQVIKDLDAL-GIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAG 373 (391)
T ss_dssp CCSSEEEEECSSCS---------SCHHHHHHHHHHT-TCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTT
T ss_pred eeEEEEEEECCccc---------hhHHHHHHHHHHC-CCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCC
Confidence 32 24666664100 2678899988776 9999987511 0 02469999886
Q ss_pred -CHHHHHHHHHHHHHHH
Q 012095 447 -SLTTLQAAVERIKKGL 462 (471)
Q Consensus 447 -~~e~i~~~~~~l~~~l 462 (471)
++++++++++.|++++
T Consensus 374 ~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 374 LTEADIDRVIAALDQVL 390 (391)
T ss_dssp CCHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 9999999999988653
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-30 Score=262.32 Aligned_cols=339 Identities=16% Similarity=0.155 Sum_probs=231.2
Q ss_pred cCCCeEEcCCCCC--CCC-ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGEP--DFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~~--~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.+|||+.|.+ .++ .++.+.+++.+++.++. .|+ +..++++.+++++.+.++ ..++|++++|+++++.
T Consensus 54 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~-~~~---~~~~~~~~l~~~la~~~~---~~~~v~~~~sgseA~~ 126 (434)
T 2epj_A 54 DGARIVDLVLAYGPLILGHKHPRVLEAVEEALARGW-LYG---APGEAEVLLAEKILGYVK---RGGMIRFVNSGTEATM 126 (434)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCS-CCS---SCCHHHHHHHHHHHHHHC---TTCEEEEESSHHHHHH
T ss_pred CCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhCC-CCC---CCCHHHHHHHHHHHHhCC---CCCEEEEeCCHHHHHH
Confidence 5678999998873 344 47899999999987642 221 234666777777776664 4689999999999999
Q ss_pred HHHHH---hcCCCCeEEEcCCCCCChHHHHH--------------HcCC------EEEEecCCCCCCCcCCHHHHHhhhc
Q 012095 170 QAVLA---VCSPGDEVIIPAPFWVSYPEMAR--------------IADA------TPVILPTRISENFLLDPKVLESKLT 226 (471)
Q Consensus 170 ~~~~~---l~~~gd~Vlv~~p~y~~~~~~~~--------------~~G~------~~~~v~~~~~~~~~ld~e~l~~~l~ 226 (471)
.++++ +. +++.|++.+|+|+++...+. ..|. +++.++. .|+++|+++++
T Consensus 127 ~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~ 198 (434)
T 2epj_A 127 TAIRLARGYT-GRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-------NDVEALERVFA 198 (434)
T ss_dssp HHHHHHHHHH-CCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-------TCHHHHHHHHH
T ss_pred HHHHHHHHhh-CCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-------CCHHHHHHHHH
Confidence 99887 44 45788888999987654221 1232 2444543 28999999886
Q ss_pred c---CCcEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCc
Q 012095 227 E---KSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK 302 (471)
Q Consensus 227 ~---~~~~i~i~~p~NPtG~~~-~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 302 (471)
+ ++++|+++..+||||.++ +++++++|.++|++| |++||+||+|.++.. +. ...+..... .. .+.||||
T Consensus 199 ~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-g~~lI~DEv~~g~~~-g~-~~~~~~~~~-~~---di~s~sK 271 (434)
T 2epj_A 199 EYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRES-GALLILDEVVTGFRL-GL-EGAQGYFNI-EG---DIIVLGK 271 (434)
T ss_dssp HHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHH-TCEEEEEETTTTTTS-ST-THHHHHHTC-CC---SEEEEEG
T ss_pred hCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHc-CCEEEEEcchhceeC-Cc-chhhHHhCC-CC---Ceeeecc
Confidence 3 455554444467899866 799999999999999 999999999997632 32 111111111 11 1458999
Q ss_pred ccCccchhheeeEcCHHHHHHHHHHH---hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCC-
Q 012095 303 AFAMTGWRLGYIAGPKHFVAACNKIQ---SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL- 378 (471)
Q Consensus 303 ~~g~~G~R~G~v~~~~~~i~~l~~~~---~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~- 378 (471)
.++ +|+|+||+++++++++.+.... ...+++.+++++.++.++|+. .++ +++.++++++++++.+.|+++
T Consensus 272 ~l~-~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~---~~~--~~~~~~~~~~~~~l~~~L~~~~ 345 (434)
T 2epj_A 272 IIG-GGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKA---LEE--EPVYSVSREAAKALEEAASEVL 345 (434)
T ss_dssp GGG-TTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHH---HHH--SCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhc-CCcceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHH---HHh--cCHHHHHHHHHHHHHHHHHHHH
Confidence 998 5999999999999988765421 223557889999998888874 111 345566677777777777653
Q ss_pred --CCCe-eeCCCcceEEeEecCCc-cCC-cccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHH
Q 012095 379 --EGVK-MSEPQGAFYLFIDFSTY-YGS-EAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQA 453 (471)
Q Consensus 379 --~g~~-~~~p~~g~~~~~~~~~~-~~~-~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~ 453 (471)
.++. ...+. |.++|+.+++. ... .........+..++++.|+++ ||.+.||.. .++|+++..+++++++
T Consensus 346 ~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~----~~~~~~~~~t~e~i~~ 419 (434)
T 2epj_A 346 DRTGLPYTINRV-ESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRR-GVFIAPSNL----EAVFTGLPHQGEALEI 419 (434)
T ss_dssp HHHTCCEEEEEE-TTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHT-TEECCSSTT----SCEECCTTCSHHHHHH
T ss_pred hhCCCcEEEEEe-eeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHC-CeEEeccCC----CcEEEeccCCHHHHHH
Confidence 1343 23344 45678888641 000 000000001256788888865 999999752 3578887779999999
Q ss_pred HHHHHHHHHHhh
Q 012095 454 AVERIKKGLLTL 465 (471)
Q Consensus 454 ~~~~l~~~l~~~ 465 (471)
++++|+++++++
T Consensus 420 ~l~~l~~~l~~~ 431 (434)
T 2epj_A 420 AVEGLRSSLKTV 431 (434)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998875
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-29 Score=257.14 Aligned_cols=360 Identities=14% Similarity=0.114 Sum_probs=246.1
Q ss_pred cccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCC-CCCCC---CCCCHHHH--HHHH
Q 012095 69 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGF-TRYTP---NAGTLELR--SAIC 142 (471)
Q Consensus 69 s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~-~~Y~~---~~G~~~lr--~~ia 142 (471)
..++..+.++.+..+.+...+. .+.|+|..+++. .++.+.+++.+++.+.. .+|+. ..|...++ +.++
T Consensus 23 ~~~l~~~~~~i~~~~~~~~~~~----~~~i~l~~~~~~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a 96 (447)
T 3h7f_A 23 SAPLAEVDPDIAELLAKELGRQ----RDTLEMIASENF--VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLA 96 (447)
T ss_dssp GCCHHHHCHHHHHHHHHHHHHH----HHSEECCTTCCC--CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHH----hCceeEecCCCC--CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHH
Confidence 3455566665444443322221 246888776654 38889999888775322 23322 13555555 6666
Q ss_pred -HHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChH-HH----HHHcCCEEEEecCCCCCCCcC
Q 012095 143 -HKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP-EM----ARIADATPVILPTRISENFLL 216 (471)
Q Consensus 143 -~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~-~~----~~~~G~~~~~v~~~~~~~~~l 216 (471)
+++.+.+|.+ . ..++++|+++++..++.++++|||+|++++|+|.++. .. ....+..++.++++++ ++.+
T Consensus 97 ~~~la~~~g~~--~-~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~ 172 (447)
T 3h7f_A 97 RDRAKALFGAE--F-ANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPA-THLI 172 (447)
T ss_dssp HHHHHHHHTCS--E-EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTT-TCSC
T ss_pred HHHHHHHcCCC--c-eEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcc-cCCc
Confidence 8888878843 2 3333777888999999999999999999999998732 11 2224567777777643 4679
Q ss_pred CHHHHHhhhc-cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCc-cccCCCCccccccCCCCCCce
Q 012095 217 DPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWERT 294 (471)
Q Consensus 217 d~e~l~~~l~-~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~~~ 294 (471)
|++++++++. .++++|++++|+||++. + +++|.++|++| |++||+||+|.. +.+.+. ..... . ...
T Consensus 173 d~~~l~~~i~~~~~~~i~~~~~~~~~~~--~---l~~i~~l~~~~-g~lli~Dea~~~g~~~~g~-~~~~~--~---~~d 240 (447)
T 3h7f_A 173 DMDAVRATALEFRPKVIIAGWSAYPRVL--D---FAAFRSIADEV-GAKLLVDMAHFAGLVAAGL-HPSPV--P---HAD 240 (447)
T ss_dssp CHHHHHHHHHHHCCSEEEEECSSCCSCC--C---HHHHHHHHHHH-TCEEEEECTTTHHHHHTTS-SCCST--T---TCS
T ss_pred CHHHHHHHHHhcCCeEEEEcCCCCCCcc--C---HHHHHHHHHHc-CCEEEEECCchhhhhcCCC-CCCCC--C---CCc
Confidence 9999999985 47899999999999887 4 89999999999 999999999753 444332 11111 1 223
Q ss_pred EEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCC-CChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHH
Q 012095 295 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG-ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 373 (471)
Q Consensus 295 i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~-~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~ 373 (471)
+++.|+||.+ +|+|.||+++++++++.+.........+ ++...+.++..++... ...++++.++++.++++++.+
T Consensus 241 i~~~s~sK~l--~G~~gG~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~ 316 (447)
T 3h7f_A 241 VVSTTVHKTL--GGGRSGLIVGKQQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIA--ATPEFADRQRRTLSGARIIAD 316 (447)
T ss_dssp EEEEESSGGG--CCCSCEEEEECGGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCcCC--CCCCeEEEEECHHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHHH
Confidence 8899999987 4899999999999999888765544433 3444455555555531 234678889999999999999
Q ss_pred HhcCC----CCCeeeC-CCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEE----CC--CCCCCCCcEEE
Q 012095 374 SFGEL----EGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV----PG--DAFGDDTCIRI 442 (471)
Q Consensus 374 ~L~~~----~g~~~~~-p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~----pg--~~f~~~~~iRi 442 (471)
.|.+. +|+.+.. +.+++++|+++... + .+.. .+..++++.||.+. |+ .....++++|+
T Consensus 317 ~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~---------~~~~-~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRi 385 (447)
T 3h7f_A 317 RLMAPDVAKAGVSVVSGGTDVHLVLVDLRDS-P---------LDGQ-AAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRI 385 (447)
T ss_dssp HHTSHHHHHTTCEEGGGSCSSSEEEEECTTS-S---------CCHH-HHHHHHHHTTEECBC-------------CEEEE
T ss_pred HHHhccccCCCeEEecCCCCCCEEEEEcCCC-C---------CCHH-HHHHHHHHCCeEEecccCCCCCCCCCCCCceec
Confidence 99886 5787754 34567788888542 1 1344 44455666799998 66 33334678999
Q ss_pred Eeec------CHHHHHHHHHHHHHHHHhh
Q 012095 443 SYAA------SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 443 s~~~------~~e~i~~~~~~l~~~l~~~ 465 (471)
++.. ++++++++++.|.+++.+.
T Consensus 386 g~~~~~~~~~~~eei~~~~~~l~~~l~~~ 414 (447)
T 3h7f_A 386 GTPALATRGFGDTEFTEVADIIATALATG 414 (447)
T ss_dssp ECHHHHHHTCCHHHHHHHHHHHHHHHHSG
T ss_pred cCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 8753 6799999999999998754
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-29 Score=249.28 Aligned_cols=284 Identities=16% Similarity=0.214 Sum_probs=210.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH----HHHcCCEEEE
Q 012095 130 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVI 205 (471)
Q Consensus 130 ~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~G~~~~~ 205 (471)
+..+..++++.+++++. . .++|++++| ++++..++++++++||.|++++|+|.+.... ++..|++++.
T Consensus 50 ~~~~~~~l~~~la~~~~----~---~~~i~~~sG-t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 121 (386)
T 1cs1_A 50 GNPTRDVVQRALAELEG----G---AGAVLTNTG-MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLF 121 (386)
T ss_dssp CCHHHHHHHHHHHHHHT----C---SEEEEESSH-HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEE
T ss_pred CCccHHHHHHHHHHHhC----C---CcEEEeCCH-HHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEE
Confidence 45667888888888863 2 256666666 8999999999999999999999999874443 4677999999
Q ss_pred ecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccc
Q 012095 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 285 (471)
Q Consensus 206 v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~ 285 (471)
++.+ |++.+++++++++++|++++|+||||.+++ +++|.++|++| ++++|+||+|..+.+.. .+
T Consensus 122 ~~~~-------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~~li~De~~~~~~~~~----~~- 185 (386)
T 1cs1_A 122 VDQG-------DEQALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREV-GAVSVVDNTFLSPALQN----PL- 185 (386)
T ss_dssp ECTT-------CHHHHHHHHHTCCSEEEEECSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTCTTTCC----GG-
T ss_pred eCCC-------CHHHHHHhhccCCcEEEEeCCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCCcccccCC----cc-
Confidence 8862 899999999889999999999999999998 89999999999 99999999999865431 11
Q ss_pred cCCCCCCceEEEecCCcccCccchhh-eeeEcCH-HHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHH
Q 012095 286 SLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPK-HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (471)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~g~~G~R~-G~v~~~~-~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~ 363 (471)
. .+.++++.|+||.++.+|.|+ ||+++++ ++++.+......++.+.+++.+.++...++. +....+.
T Consensus 186 ~----~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~ 254 (386)
T 1cs1_A 186 A----LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRT-------LVPRMEL 254 (386)
T ss_dssp G----GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTT-------HHHHHHH
T ss_pred c----cCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccH-------HHHHHHH
Confidence 1 356799999999998899997 9999986 8999888776665666788888777666642 3445556
Q ss_pred HHHHHHHHHHHhcCCCCCeee-CC-----------------CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCC
Q 012095 364 FRERRDFLVKSFGELEGVKMS-EP-----------------QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 425 (471)
Q Consensus 364 ~~~~r~~l~~~L~~~~g~~~~-~p-----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~g 425 (471)
..++++.+.+.|.+++++... .+ .+++ +.+.+++ ....+.+.| ++.|
T Consensus 255 ~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~~~l-~~~g 319 (386)
T 1cs1_A 255 AQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAM-LSFELDG-------------DEQTLRRFL-GGLS 319 (386)
T ss_dssp HHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSE-EEEEESS-------------CHHHHHHHH-HTCS
T ss_pred HHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceE-EEEEECC-------------CHHHHHHHH-HhCC
Confidence 677777777777776443221 11 2555 4455642 344555554 5569
Q ss_pred EEEECCCCCC---------------------------CCCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012095 426 VALVPGDAFG---------------------------DDTCIRISYAASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 426 V~v~pg~~f~---------------------------~~~~iRis~~~~~e~i~~~~~~l~~~l~~~~ 466 (471)
|.+.+++ || .++++|+|++. ++.++.+++|.++++++.
T Consensus 320 i~~~~~~-~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~--~~~~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 320 LFTLAES-LGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI--EDGEDLIADLENGFRAAN 384 (386)
T ss_dssp SSEEBSC-CCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHHHHHHHT
T ss_pred cceEccc-CCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEcc--CCHHHHHHHHHHHHHHhh
Confidence 9876421 22 14799999998 345555666666665543
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-29 Score=251.03 Aligned_cols=282 Identities=17% Similarity=0.177 Sum_probs=200.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEE
Q 012095 130 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVI 205 (471)
Q Consensus 130 ~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~G~~~~~ 205 (471)
+.+...++++.+++++ |. + +.++++++++++..++++++++||.|++++|+|.++...+ +..|++++.
T Consensus 63 ~~~~~~~l~~~la~~~----g~---~-~~i~~~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 134 (398)
T 1gc0_A 63 SNPTLNLLEARMASLE----GG---E-AGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRH 134 (398)
T ss_dssp CCHHHHHHHHHHHHHH----TC---S-EEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEE
T ss_pred CChHHHHHHHHHHHHh----CC---C-cEEEECCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEE
Confidence 3344556666666654 42 2 5555556679999999999999999999999999988765 678999999
Q ss_pred ecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccc
Q 012095 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 285 (471)
Q Consensus 206 v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~ 285 (471)
++.+ |++++++++++++++|++++|+||||.+++ +++|.++|++| ++++|+||+|..+.+.. ++
T Consensus 135 ~~~~-------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~~li~D~~~~~~~~~~----~~- 198 (398)
T 1gc0_A 135 VDMA-------DLQALEAAMTPATRVIYFESPANPNMHMAD---IAGVAKIARKH-GATVVVDNTYCTPYLQR----PL- 198 (398)
T ss_dssp ECTT-------CHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHGGG-TCEEEEECTTTHHHHCC----GG-
T ss_pred ECCC-------CHHHHHHhcCCCCeEEEEECCCCCCccccc---HHHHHHHHHHc-CCEEEEECCCcccccCC----ch-
Confidence 8752 899999999989999999999999999998 99999999999 99999999998765421 11
Q ss_pred cCCCCCCceEEEecCCcccCccchhh-eeeEcCHHHHH-HHHHHHhc-ccCCCChHHHHHHHHHHhccCCChHHHHHHHH
Q 012095 286 SLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVA-ACNKIQSQ-FTSGASSISQKAGVAALGLGYAGGEVVSKMVK 362 (471)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~g~~G~R~-G~v~~~~~~i~-~l~~~~~~-~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~ 362 (471)
. .+..+++.|+||.++.+|+|+ ||+++++++++ .+...... ++.+.+++.+.++...++. +....+
T Consensus 199 ~----~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~ 267 (398)
T 1gc0_A 199 E----LGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKT-------LNLRMD 267 (398)
T ss_dssp G----GTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTT-------HHHHHH
T ss_pred h----hCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccch-------HHHHHH
Confidence 1 245699999999999899998 99999988776 56555544 4556788888877777753 234444
Q ss_pred HHHHHHHHHHHHhcCCCCC--------------eeeCC----CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcC
Q 012095 363 AFRERRDFLVKSFGELEGV--------------KMSEP----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 424 (471)
Q Consensus 363 ~~~~~r~~l~~~L~~~~g~--------------~~~~p----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~ 424 (471)
...++++.+.+.|.+++++ ++..+ .+++ +.+.++. ..+....++++.
T Consensus 268 ~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~-~~~~l~~--------------~~~~~~~~l~~~ 332 (398)
T 1gc0_A 268 RHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGM-IAFELKG--------------GIGAGRRFMNAL 332 (398)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTE-EEEEETT--------------HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceE-EEEEECC--------------CHHHHHHHHHhC
Confidence 5555666666666654332 22222 3555 4446642 223344455666
Q ss_pred CEEEEC---CCCC----------------------CC-CCcEEEEeec--CHHHHHHHHHHHHHH
Q 012095 425 QVALVP---GDAF----------------------GD-DTCIRISYAA--SLTTLQAAVERIKKG 461 (471)
Q Consensus 425 gV~v~p---g~~f----------------------~~-~~~iRis~~~--~~e~i~~~~~~l~~~ 461 (471)
++.+.. |+.+ |. +++||+|++. ++++++.+.+.|+++
T Consensus 333 ~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 333 QLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp SSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 777655 4220 11 4799999998 556677766666543
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.7e-30 Score=258.76 Aligned_cols=336 Identities=14% Similarity=0.135 Sum_probs=229.8
Q ss_pred cCCCeEEcCCCC--CCCC-ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.+|||+.|. ..++ .|+.+.+++.+++.++. .|+ +..++++.+++++.+.++ .+++|++++|+++++.
T Consensus 50 ~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~ea~~ 122 (424)
T 2e7u_A 50 DGNRYLDYVMSWGPLILGHAHPKVLARVRETLERGL-TFG---APSPLEVALAKKVKRAYP---FVDLVRFVNSGTEATM 122 (424)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCS-CCS---SCCHHHHHHHHHHHHHCT---TCCEEEEESSHHHHHH
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhCC-CCC---CCCHHHHHHHHHHHHhCC---CCCEEEEeCCHHHHHH
Confidence 577899999886 3444 47899999999987642 332 345778888888877764 5689999999999999
Q ss_pred HHHHH---hcCCCCeEEEcCCCCCChHHHHHH--------------cCC------EEEEecCCCCCCCcCCHHHHHhhhc
Q 012095 170 QAVLA---VCSPGDEVIIPAPFWVSYPEMARI--------------ADA------TPVILPTRISENFLLDPKVLESKLT 226 (471)
Q Consensus 170 ~~~~~---l~~~gd~Vlv~~p~y~~~~~~~~~--------------~G~------~~~~v~~~~~~~~~ld~e~l~~~l~ 226 (471)
.+++. +.+ ++.|++.+|+|+++...+.. .|. +++.++. .|+++|+++++
T Consensus 123 ~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~ 194 (424)
T 2e7u_A 123 SALRLARGYTG-RPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-------NDPEGLREVLK 194 (424)
T ss_dssp HHHHHHHHHHC-CCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-------TCHHHHHHHHH
T ss_pred HHHHHHHHhhC-CCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-------CCHHHHHHHHH
Confidence 98886 444 57888999999886543221 121 3444443 38999999886
Q ss_pred c--CCcEEEEcCCCCC-cccCC-CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCc
Q 012095 227 E--KSRLLILCSPSNP-TGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK 302 (471)
Q Consensus 227 ~--~~~~i~i~~p~NP-tG~~~-~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 302 (471)
+ +..++++++|+|+ ||.++ +++++++|.++ ++| |++||+||+|.++ ..+.. ........ ... +.||||
T Consensus 195 ~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~-g~~lI~DEv~~g~-~~g~~-~~~~~~~~-~~d---i~s~sK 266 (424)
T 2e7u_A 195 RRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAY-GVLLIADEVMTGF-RLAFG-GATELLGL-KPD---LVTLGK 266 (424)
T ss_dssp HHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGG-TCEEEEECTTTTT-TSSTT-HHHHHHTC-CCS---EEEECG
T ss_pred hCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHc-CCEEEEecCcccc-ccchh-HHHHHhCC-Ccc---hhhhhh
Confidence 3 2334556677654 89765 79999999999 999 9999999999987 33321 11111111 111 348999
Q ss_pred ccCccchhheeeEcCHHHHHHHHHHH---hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCC-
Q 012095 303 AFAMTGWRLGYIAGPKHFVAACNKIQ---SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL- 378 (471)
Q Consensus 303 ~~g~~G~R~G~v~~~~~~i~~l~~~~---~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~- 378 (471)
.+| +|+|+||+++++++++.+.... ...+++.+++++.++.++|+. .++ .+++.++++++++++.+.|+++
T Consensus 267 ~l~-~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~---~~~-~~~~~~~~~~~~~~l~~~L~~~~ 341 (424)
T 2e7u_A 267 ILG-GGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLEL---LEE-NPGYYAYLEDLGARLEAGLKEVL 341 (424)
T ss_dssp GGG-TTSSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHH---HHH-CTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhh-CCcceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHH---HHh-ccHHHHHHHHHHHHHHHHHHHHH
Confidence 999 6999999999999988776521 223557889999999988874 111 2456667777777777777653
Q ss_pred --CCCe-eeCCCcceEEeEecCCccCCcc-c-CCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHH
Q 012095 379 --EGVK-MSEPQGAFYLFIDFSTYYGSEA-E-GFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQA 453 (471)
Q Consensus 379 --~g~~-~~~p~~g~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~ 453 (471)
.++. ...+. |.++|+.+++...... . ......+..++++.|++ +||.+.||.. ..+|+++..+++++++
T Consensus 342 ~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~----~~~~~~~~~t~~~i~~ 415 (424)
T 2e7u_A 342 KEKGLPHTVNRV-GSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLD-RGIYWPPSNF----EAAFLSVAHREEDVEK 415 (424)
T ss_dssp HHTTCCCEEEEE-TTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHT-TTEECCSSSS----SCEECCTTCCHHHHHH
T ss_pred HhCCCceEEEee-ceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHH-CCeEEeccCC----CceEeeccCCHHHHHH
Confidence 1442 23444 4468888864100000 0 00000124578888885 5999999752 3578887779999999
Q ss_pred HHHHHHHHH
Q 012095 454 AVERIKKGL 462 (471)
Q Consensus 454 ~~~~l~~~l 462 (471)
++++|++++
T Consensus 416 ~l~~l~~~l 424 (424)
T 2e7u_A 416 TLEALRKAL 424 (424)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999998763
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=249.18 Aligned_cols=288 Identities=15% Similarity=0.175 Sum_probs=210.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHH----cCCEEEEecCCC
Q 012095 135 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI----ADATPVILPTRI 210 (471)
Q Consensus 135 ~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~----~G~~~~~v~~~~ 210 (471)
...++.+++.+.+.+|. +++++++|+++++..++++++++||+|++++|+|.++...++. .|++++.++.+
T Consensus 80 ~p~~~~l~~~la~~~g~----~~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~- 154 (414)
T 3ndn_A 80 NPTVSVFEERLRLIEGA----PAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD- 154 (414)
T ss_dssp CHHHHHHHHHHHHHHTC----SEEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-
T ss_pred ChHHHHHHHHHHHHHCC----CcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC-
Confidence 34666666666666662 5789999999999999999999999999999999998876644 99999999863
Q ss_pred CCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCC
Q 012095 211 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 290 (471)
Q Consensus 211 ~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~ 290 (471)
|+++|++++++++++|++++|+||||.+.+ +++|+++|++| +++||+||+|....+.. ++ .
T Consensus 155 ------d~~~l~~ai~~~t~~v~le~p~NptG~~~~---l~~i~~la~~~-g~~livDe~~~~~~~~~----~~-----~ 215 (414)
T 3ndn_A 155 ------DLSQWERALSVPTQAVFFETPSNPMQSLVD---IAAVTELAHAA-GAKVVLDNVFATPLLQQ----GF-----P 215 (414)
T ss_dssp ------CHHHHHHHTSSCCSEEEEESSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTHHHHCC----CG-----G
T ss_pred ------CHHHHHHhcCCCCeEEEEECCCCCCCcccc---HHHHHHHHHHc-CCEEEEECCCcccccCC----ch-----h
Confidence 899999999999999999999999999998 88999999999 99999999998432211 11 1
Q ss_pred CCceEEEecCCcccCccc-hhheeeEcCHHHHH-HHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 012095 291 WERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVA-ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 368 (471)
Q Consensus 291 ~~~~i~~~S~SK~~g~~G-~R~G~v~~~~~~i~-~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r 368 (471)
.+..+++.|+||.+|.+| +|+||++++++.+. .+.........+.+++...++...+ +++....++..+++
T Consensus 216 ~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l-------~~l~~r~~~~~~~a 288 (414)
T 3ndn_A 216 LGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGL-------ETLAIRVQHSNASA 288 (414)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHG-------GGHHHHHHHHHHHH
T ss_pred cCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 244589999999998778 89999999998876 6665555555556666544443333 33556666777888
Q ss_pred HHHHHHhcCCCCCee-eCCC----------------cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECC
Q 012095 369 DFLVKSFGELEGVKM-SEPQ----------------GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG 431 (471)
Q Consensus 369 ~~l~~~L~~~~g~~~-~~p~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg 431 (471)
+.+.+.|++.|++.. ..|. .|..+++.++...... ......|.+.|. ..++.+..|
T Consensus 289 ~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~------~~~~~~~~~~l~-~~~~~~s~G 361 (414)
T 3ndn_A 289 QRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVA------KQRAFEVLDKMR-LIDISNNLG 361 (414)
T ss_dssp HHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGH------HHHHHHHHHHCS-SSEECSCCS
T ss_pred HHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcccc------HHHHHHHHHhCc-cceEcCCCC
Confidence 889999988877643 2232 3556888886410000 013456666543 347777777
Q ss_pred CCCC-----------------------CCCcEEEEeecCHHHHHHHHHHHHHHH
Q 012095 432 DAFG-----------------------DDTCIRISYAASLTTLQAAVERIKKGL 462 (471)
Q Consensus 432 ~~f~-----------------------~~~~iRis~~~~~e~i~~~~~~l~~~l 462 (471)
..+. .+++||||++. |+.++.++.|++++
T Consensus 362 ~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~--e~~~dli~dl~~al 413 (414)
T 3ndn_A 362 DAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL--EDTDDLIADIDRAL 413 (414)
T ss_dssp CSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred CCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc--CCHHHHHHHHHHhh
Confidence 6542 24689999997 23445555555554
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=261.81 Aligned_cols=335 Identities=11% Similarity=0.037 Sum_probs=233.5
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHH----cCCCCCC-CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIR----EGFTRYT-PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 94 g~~~i~l~~g~~~~~~p~~v~~a~~~~~~----~~~~~Y~-~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
+++.|.|..+..... |+.+.+++.+++. .+...|. ...+..++.+.+.+++.+.+|. ++++|++|+|+++++
T Consensus 65 ~~~~iyld~~~~g~~-p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~~~~v~~t~g~t~al 141 (465)
T 3e9k_A 65 DENAIYFLGNSLGLQ-PKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGA--NEKEIALMNALTVNL 141 (465)
T ss_dssp TCBCEECBTTTSCCE-ETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTC--CGGGEEECSCHHHHH
T ss_pred CCCeEEecCCccCCC-hHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCC--CcCCEEEECCHHHHH
Confidence 346888988875432 4444444444332 1211111 1112223333344444444553 578999999999999
Q ss_pred HHHHHHhcCCCCe---EEEcCCCCCChHH----HHHHcCCEEE-----EecCCCCCCCcCCHHHHHhhhc---cCCcEEE
Q 012095 169 LQAVLAVCSPGDE---VIIPAPFWVSYPE----MARIADATPV-----ILPTRISENFLLDPKVLESKLT---EKSRLLI 233 (471)
Q Consensus 169 ~~~~~~l~~~gd~---Vlv~~p~y~~~~~----~~~~~G~~~~-----~v~~~~~~~~~ld~e~l~~~l~---~~~~~i~ 233 (471)
..++.++++|||. |++++|+|+++.. .++..|++++ .++. ++++.+|+++++++++ +++++|+
T Consensus 142 ~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~--~~~~~~d~~~l~~~i~~~~~~~~lv~ 219 (465)
T 3e9k_A 142 HLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPR--EGEETLRIEDILEVIEKEGDSIAVIL 219 (465)
T ss_dssp HHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCC--TTCSSCCHHHHHHHHHHHGGGEEEEE
T ss_pred HHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecC--CCCCccCHHHHHHHHHhcCCCeEEEE
Confidence 9999999887655 9999999988544 6677898852 3343 3457799999999996 6789999
Q ss_pred EcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhhee
Q 012095 234 LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 313 (471)
Q Consensus 234 i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~ 313 (471)
+++|+||||.+++ +++|.++|++| |++||+|++|... .....+.. .+..+++.|++|.++....++|+
T Consensus 220 ~~~~~n~tG~~~~---l~~i~~la~~~-g~~vi~D~a~~~g----~~~~~~~~----~~~D~~~~s~~K~l~~gp~~~g~ 287 (465)
T 3e9k_A 220 FSGVHFYTGQHFN---IPAITKAGQAK-GCYVGFDLAHAVG----NVELYLHD----WGVDFACWCSYKYLNAGAGGIAG 287 (465)
T ss_dssp EESBCTTTCBBCC---HHHHHHHHHHT-TCEEEEECTTTTT----TSCCCHHH----HTCCEEEECSSSTTCCCTTCCCE
T ss_pred EeCcccCcceeec---HHHHHHHHHHc-CCEEEEEhhhhcC----CcCCchhh----cCCCEEEECcccccccCCCceEE
Confidence 9999999999999 88999999999 9999999999752 21111111 24458899999999323337899
Q ss_pred eEcCHHHHHHHHHHHh-------------------------cccCCCChHHHHHHHHHHhccCCChHH-HHHHHHHHHHH
Q 012095 314 IAGPKHFVAACNKIQS-------------------------QFTSGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRER 367 (471)
Q Consensus 314 v~~~~~~i~~l~~~~~-------------------------~~~~~~~~~~q~aa~~~L~~~~~~~~~-~~~~~~~~~~~ 367 (471)
+++++++++.+..... ....+++.+...++.++++. ..++ +++++++++++
T Consensus 288 l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~---~~~~~~~~~~~~~~~~ 364 (465)
T 3e9k_A 288 AFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEI---FKQATMKALRKKSVLL 364 (465)
T ss_dssp EEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHH
T ss_pred EEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHH---HHHcCHHHHHHHHHHH
Confidence 9999888765431100 00114666677777777764 2333 78899999999
Q ss_pred HHHHHHHhcCC----------CCCeeeCCC----cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC
Q 012095 368 RDFLVKSFGEL----------EGVKMSEPQ----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 433 (471)
Q Consensus 368 r~~l~~~L~~~----------~g~~~~~p~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~ 433 (471)
++++.+.|+++ +|+++..|. .|.++++.++. +..++.+.|.++ ||.+.
T Consensus 365 ~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~-------------~~~~l~~~L~~~-Gi~v~---- 426 (465)
T 3e9k_A 365 TGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV-------------PNKDVFQELEKR-GVVCD---- 426 (465)
T ss_dssp HHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECC-------------TTCCHHHHHHTT-TEECE----
T ss_pred HHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecC-------------CHHHHHHHHHHC-CEEEe----
Confidence 99999999884 688888775 25557777762 345788888765 99986
Q ss_pred CCCCCcEEEEe-ec--CHHHHHHHHHHHHHHHHhhC
Q 012095 434 FGDDTCIRISY-AA--SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 434 f~~~~~iRis~-~~--~~e~i~~~~~~l~~~l~~~~ 466 (471)
+..++++|+++ .. ++++++++++.|++++++..
T Consensus 427 ~~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~~~ 462 (465)
T 3e9k_A 427 KRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDSAE 462 (465)
T ss_dssp EETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC--
T ss_pred cCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHhcc
Confidence 33468999998 33 89999999999999987643
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=258.38 Aligned_cols=348 Identities=14% Similarity=0.105 Sum_probs=220.5
Q ss_pred cCCCeEEcCCCCC--CCC-ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGEP--DFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~~--~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.++|+..|.. .++ .++.+.+++.+++.+....+.+. +....+++.+.+.++ ..+++++|+|+++++.
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~----~~~~~la~~l~~~~~---~~~~v~~~~sGsea~~ 123 (429)
T 4e77_A 51 DGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSFGAPT----EMEVKMAQLVTDLVP---TMDMVRMVNSGTEATM 123 (429)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCCSSCC----HHHHHHHHHHHHHST---TCSEEEEESSHHHHHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcccCCCC----HHHHHHHHHHHhhCC---CCCEEEEeCcHHHHHH
Confidence 5788999998874 344 37899999999987643222243 455556666655554 4689999999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCChHHHHH-HcC--CEEEEecCCCCCCC------------cCCHHHHHhhhcc--CCc
Q 012095 170 QAVLAVC--SPGDEVIIPAPFWVSYPEMAR-IAD--ATPVILPTRISENF------------LLDPKVLESKLTE--KSR 230 (471)
Q Consensus 170 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~-~~G--~~~~~v~~~~~~~~------------~ld~e~l~~~l~~--~~~ 230 (471)
.+++... ..++.|++.+++|+++...+. ..| ......+.. .++ ..|+++|++++++ +..
T Consensus 124 ~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 201 (429)
T 4e77_A 124 SAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNS--PGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEV 201 (429)
T ss_dssp HHHHHHHHHHCCCEEEEETTCCCC------------------CCC--TTSCGGGGTTEEEECTTCHHHHHHHHHHSTTTE
T ss_pred HHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCc--CCCCCccCCceeecCCCCHHHHHHHHHhcCCCE
Confidence 9988543 256789999999988765221 111 111111110 000 0189999999864 234
Q ss_pred EEEEcCCCCCcc-c-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccc
Q 012095 231 LLILCSPSNPTG-S-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 308 (471)
Q Consensus 231 ~i~i~~p~NPtG-~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 308 (471)
++++++|+||+| . ..+++.+++|.++|++| |++||+||+|.++ ..+.. ........ ... +.||||.++ +|
T Consensus 202 ~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~-~~lli~DEv~~g~-r~g~~-~~~~~~~~-~pd---i~t~sK~~~-~G 273 (429)
T 4e77_A 202 ACIIVEPVAGNMNCIPPLPEFLPGLRALCDEF-GALLIIDEVMTGF-RVALA-GAQDYYHV-IPD---LTCLGKIIG-GG 273 (429)
T ss_dssp EEEEECSSBCTTSCBCCCTTHHHHHHHHHHHH-TCEEEEEETTTBT-TTBTT-CHHHHTTC-CCS---EEEEEGGGG-TT
T ss_pred EEEEECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCc-ccCcc-hHHHhcCC-CCC---eeeeccccc-CC
Confidence 555677766554 3 34466799999999999 9999999999987 43321 11111111 111 458999998 89
Q ss_pred hhheeeEcCHHHHHHHHHH---HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC
Q 012095 309 WRLGYIAGPKHFVAACNKI---QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385 (471)
Q Consensus 309 ~R~G~v~~~~~~i~~l~~~---~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~ 385 (471)
+|+||+++++++++.+... ....+++.+++++.++.++|+.... ++++++.++..+..++.+.+.+.+. ++....
T Consensus 274 ~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~ 351 (429)
T 4e77_A 274 MPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQ-VGVYETLTELTDSLATGLRHAAKEE-NIPLVV 351 (429)
T ss_dssp SCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTS-TTHHHHHHHHHHHHHHHHHHHHHHT-TCCCEE
T ss_pred CCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhC-CCceEE
Confidence 9999999999999887642 1234557899999999999874221 3344444444444444444444334 333333
Q ss_pred CCcceEEeEecCCccCC-cc--cCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHH
Q 012095 386 PQGAFYLFIDFSTYYGS-EA--EGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGL 462 (471)
Q Consensus 386 p~~g~~~~~~~~~~~~~-~~--~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l 462 (471)
+..|+|+|+.+++.... .. ..........++++.|+++ ||.+.|+.. ..+|+++..+++++++++++|++++
T Consensus 352 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~~----~~~~~~~~~t~e~i~~~l~~l~~~l 426 (429)
T 4e77_A 352 NHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEE-GVYLAPSAF----EAGFMSLAHSNEDIQKTVNAARRCF 426 (429)
T ss_dssp EEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHT-TEECCSSTT----SCEECCTTCCHHHHHHHHHHHHHHH
T ss_pred EEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHC-CeEEeecCC----CCEEEeccCCHHHHHHHHHHHHHHH
Confidence 44566688888642000 00 0000000226788888876 999999752 4578877779999999999999998
Q ss_pred Hh
Q 012095 463 LT 464 (471)
Q Consensus 463 ~~ 464 (471)
++
T Consensus 427 ~~ 428 (429)
T 4e77_A 427 AK 428 (429)
T ss_dssp TT
T ss_pred Hh
Confidence 64
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-29 Score=251.25 Aligned_cols=292 Identities=16% Similarity=0.175 Sum_probs=202.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH----HHHcCC
Q 012095 126 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADA 201 (471)
Q Consensus 126 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~G~ 201 (471)
.+| ++++..+|++.++++++ . .++|++++| ++++..++. ++++||+|++++|+|.+.... ++..|+
T Consensus 62 ~r~-~~p~~~~l~~~la~~~g----~---~~~i~~~sG-~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~ 131 (403)
T 3cog_A 62 SRS-GNPTRNCLEKAVAALDG----A---KYCLAFASG-LAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGL 131 (403)
T ss_dssp -----CHHHHHHHHHHHHHHT----C---SEEEEESCH-HHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTC
T ss_pred cCC-CCchHHHHHHHHHHHhC----C---CcEEEECCH-HHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCC
Confidence 344 55667889999998863 2 256666666 589999998 899999999999999875443 357899
Q ss_pred EEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC-eEEEEccCCCccccCCCC
Q 012095 202 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR-LLVLSDEIYEHIIYAPAT 280 (471)
Q Consensus 202 ~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~-~~ii~De~y~~~~~~~~~ 280 (471)
+++.++.+ |++++++++++++++|++++|+||||.+++ +++|+++|++| + +++|+||+|..+.+..
T Consensus 132 ~v~~v~~~-------d~~~l~~~i~~~t~~v~~~~p~nptG~~~~---l~~i~~la~~~-g~~~livD~~~~~~~~~~-- 198 (403)
T 3cog_A 132 KISFVDCS-------KIKLLEAAITPETKLVWIETPTNPTQKVID---IEGCAHIVHKH-GDIILVVDNTFMSPYFQR-- 198 (403)
T ss_dssp EEEEECTT-------SHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHTSS-SCCEEEEECTTTCTTTCC--
T ss_pred EEEEECCC-------CHHHHHHhcCcCCeEEEEECCCCCCCeeeC---HHHHHHHHHHc-CCCEEEEECCCcccccCC--
Confidence 99999863 899999999989999999999999999999 99999999999 9 9999999998764321
Q ss_pred ccccccCCCCCCceEEEecCCcccCccch-hheeeEcC-HHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHH
Q 012095 281 HTSFASLPGMWERTLTVNGFSKAFAMTGW-RLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 358 (471)
Q Consensus 281 ~~~~~~~~~~~~~~i~~~S~SK~~g~~G~-R~G~v~~~-~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~ 358 (471)
++ . .+.++++.|+||.++.+|. |+||++++ +++++.+......++.+.+++.+.++...|+. ....++
T Consensus 199 --~~---~--~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~---l~~r~~ 268 (403)
T 3cog_A 199 --PL---A--LGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKT---LHVRME 268 (403)
T ss_dssp --TT---T--TTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT---HHHHHH
T ss_pred --cc---c--cCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhH---HHHHHH
Confidence 11 1 3567999999999987664 79999984 78999988877767777889998888877764 122233
Q ss_pred HHHHHHHHHHHHHH----------HHhcCCCCCeeeCCC----cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcC
Q 012095 359 KMVKAFRERRDFLV----------KSFGELEGVKMSEPQ----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 424 (471)
Q Consensus 359 ~~~~~~~~~r~~l~----------~~L~~~~g~~~~~p~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~ 424 (471)
+..+......+++. ..|.++||+++..++ ++++.| .++. ...+. ..++++.
T Consensus 269 ~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~-~l~~-------------~~~~~-~~~l~~~ 333 (403)
T 3cog_A 269 KHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTF-YIKG-------------TLQHA-EIFLKNL 333 (403)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEE-EESS-------------CHHHH-HHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEE-EecC-------------CHHHH-HHHHHhC
Confidence 22222222222222 224444566554443 777666 5653 22333 3445555
Q ss_pred CEEEEC---C----------CCC------------CC-CCcEEEEeecCHHHHHHHHHHHHHHHHhhCC
Q 012095 425 QVALVP---G----------DAF------------GD-DTCIRISYAASLTTLQAAVERIKKGLLTLRP 467 (471)
Q Consensus 425 gV~v~p---g----------~~f------------~~-~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~ 467 (471)
||.+.. | +.+ +. ++++|||++. ++.++.+++|.++++++..
T Consensus 334 ~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~--e~~~d~i~~l~~al~~~~~ 400 (403)
T 3cog_A 334 KLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGL--EDEEDLLEDLDQALKAAHP 400 (403)
T ss_dssp SSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHHHHHHHCC
T ss_pred CcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC--CCHHHHHHHHHHHHHHhhc
Confidence 774432 2 111 22 5799999998 2334445555556555443
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-29 Score=244.87 Aligned_cols=278 Identities=15% Similarity=0.156 Sum_probs=199.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEecCCCC
Q 012095 136 ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRIS 211 (471)
Q Consensus 136 ~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~G~~~~~v~~~~~ 211 (471)
+|++.+++++ |. ++.+++++| ++++..++.+++++||+|++++|+|+++...+ +..|++++.++.
T Consensus 2 ~l~~~la~~~----g~---~~~i~~~sG-~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--- 70 (331)
T 1pff_A 2 ALEGKIAKLE----HA---EACAATASG-MGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM--- 70 (331)
T ss_dssp HHHHHHHHHH----TC---SEEEEESSH-HHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT---
T ss_pred hHHHHHHHHh----CC---CeEEEeCCh-HHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC---
Confidence 5788888876 32 245555555 89999999999999999999999999987664 458999999875
Q ss_pred CCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHh-CCCeEEEEccCCCccccCCCCccccccCCCC
Q 012095 212 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK-HPRLLVLSDEIYEHIIYAPATHTSFASLPGM 290 (471)
Q Consensus 212 ~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~ 290 (471)
.|++++++++++++++|++++|+||||.+++ +++|.++|++ | ++++|+||+|..+.+.. ++ .
T Consensus 71 ----~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~-~~~li~D~a~~~~~~~~----~~-----~ 133 (331)
T 1pff_A 71 ----AVPGNIEKHLKPNTRIVYFETPANPTLKVID---IEDAVKQARKQK-DILVIVDNTFASPILTN----PL-----D 133 (331)
T ss_dssp ----TSTTHHHHTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSS-SCEEEEECTTTHHHHCC----GG-----G
T ss_pred ----CCHHHHHHhhcCCCeEEEEECCCCCcCcccC---HHHHHHHHhhhc-CCEEEEECCCcccccCC----hh-----h
Confidence 3889999999888999999999999999998 9999999999 9 99999999998654421 11 1
Q ss_pred CCceEEEecCCcccCccchh-heeeEcCH-HHHHHHHHHHhc-ccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Q 012095 291 WERTLTVNGFSKAFAMTGWR-LGYIAGPK-HFVAACNKIQSQ-FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367 (471)
Q Consensus 291 ~~~~i~~~S~SK~~g~~G~R-~G~v~~~~-~~i~~l~~~~~~-~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~ 367 (471)
.++++++.|+||.++.+|.| +||+++++ ++++.+...... ++.+.+++.+.++...++. .....+...+..+..
T Consensus 134 ~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~ 210 (331)
T 1pff_A 134 LGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLT---LDMRVKRAAENAQKV 210 (331)
T ss_dssp GTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred cCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcch---HHHHHHHHHHHHHHH
Confidence 35679999999999989999 79999998 999988876655 5567888888777666653 122222222222222
Q ss_pred HHHHHH----------HhcCCCCCeeeCC----CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC
Q 012095 368 RDFLVK----------SFGELEGVKMSEP----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 433 (471)
Q Consensus 368 r~~l~~----------~L~~~~g~~~~~p----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~ 433 (471)
.+++.+ .|.+++|+++..+ .+++ +.+.++ +..++.+. +++.||.+.+++.
T Consensus 211 ~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~--------------~~~~~~~~-l~~~gI~~~~~s~ 274 (331)
T 1pff_A 211 AEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSM-IAFDVD--------------GLEKAKKV-LDNCHVVSLAVSL 274 (331)
T ss_dssp HHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSE-EEEECS--------------SHHHHHHH-HHTCSSSEECSSC
T ss_pred HHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceE-EEEEEC--------------CHHHHHHH-HHhCCCceeccCC
Confidence 222222 2223344444322 3444 555654 34455554 4556997766531
Q ss_pred -------------------------CCC-CCcEEEEeec--CHHHHHHHHHHHHH
Q 012095 434 -------------------------FGD-DTCIRISYAA--SLTTLQAAVERIKK 460 (471)
Q Consensus 434 -------------------------f~~-~~~iRis~~~--~~e~i~~~~~~l~~ 460 (471)
++. ++++|+|++. ++++++.+++.|++
T Consensus 275 g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~ 329 (331)
T 1pff_A 275 GGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDL 329 (331)
T ss_dssp CSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred CCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Confidence 122 5799999998 56777777777654
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-28 Score=244.36 Aligned_cols=316 Identities=17% Similarity=0.164 Sum_probs=223.6
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcC
Q 012095 110 PVLIAEAGINAIREGFTRYTPNAG--TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPA 186 (471)
Q Consensus 110 p~~v~~a~~~~~~~~~~~Y~~~~G--~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~ 186 (471)
++++.+++.+++.. +|.+..| ..+++++++++++ .+++++|+|+++++..+++++ +++||+|+++.
T Consensus 11 ~~~v~~a~~~~~~~---~~~~~~g~~~~~l~~~la~~~~--------~~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~ 79 (394)
T 1o69_A 11 GGNELKYIEEVFKS---NYIAPLGEFVNRFEQSVKDYSK--------SENALALNSATAALHLALRVAGVKQDDIVLASS 79 (394)
T ss_dssp -CCHHHHHHHHHHH---TTTSCTTHHHHHHHHHHHHHHC--------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEES
T ss_pred CHHHHHHHHHHHHc---CCccCCChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECC
Confidence 35677888887765 3656667 8899999999872 278999999999999999999 89999999999
Q ss_pred CCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc---CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCe
Q 012095 187 PFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL 263 (471)
Q Consensus 187 p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~---~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~ 263 (471)
|+|+++...++..|++++.++++ .+|.+|++++++++++ ++++|++++ |||...+ +++|.++|+++ ++
T Consensus 80 ~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~---l~~i~~l~~~~-~~ 150 (394)
T 1o69_A 80 FTFIASVAPICYLKAKPVFIDCD--ETYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAK---MDEIVEICKEN-DI 150 (394)
T ss_dssp SSCGGGTHHHHHTTCEEEEECBC--TTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCC---HHHHHHHHHHT-TC
T ss_pred CccHHHHHHHHHcCCEEEEEEeC--CCCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhh---HHHHHHHHHHc-CC
Confidence 99999999999999999999986 4577999999999976 789999875 8998877 99999999999 99
Q ss_pred EEEEccCCC-ccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcC-HHHHHHHHHHHhcccCC-------
Q 012095 264 LVLSDEIYE-HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFTSG------- 334 (471)
Q Consensus 264 ~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~-~~~i~~l~~~~~~~~~~------- 334 (471)
+||+||+|. ++.+.+.. +..+ .+ +.+.||||..+++|.|+||++++ +++++.+.........+
T Consensus 151 ~li~Dea~~~g~~~~~~~---~~~~---~~--~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 222 (394)
T 1o69_A 151 VLIEDAAEALGSFYKNKA---LGTF---GE--FGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHL 222 (394)
T ss_dssp EEEEECTTCTTCEETTEE---TTSS---SS--EEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCS
T ss_pred EEEEECcCcccceeCCcc---cccc---cC--cEEEEEeCCccCCCCCceEEEECCHHHHHHHHHHHHhccccCcccccc
Confidence 999999998 45454321 1111 12 55666754445567899999995 89999888764432111
Q ss_pred -------CChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC----cce-EEeEecCCccC-
Q 012095 335 -------ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAF-YLFIDFSTYYG- 401 (471)
Q Consensus 335 -------~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~----~g~-~~~~~~~~~~~- 401 (471)
.+.+...++...+ +++++..++++++++++.+.|.++ +++.++. +++ .+++.++....
T Consensus 223 ~~g~~~~~~~~~aa~~l~~l-------~~l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~ 293 (394)
T 1o69_A 223 DYGYNYRLSNVLGAIGVAQM-------EVLEQRVLKKREIYEWYKEFLGEY--FSFLDELENSRSNRWLSTALINFDKNE 293 (394)
T ss_dssp SCCCBCBCCHHHHHHHHHHH-------TTHHHHHHHHHHHHHHHHHHHTTT--EECCCCCTTEECCCSSEEEEESCCGGG
T ss_pred ccCcccCcCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhccc--ccccCCCCCCcceeEEEEEEecchhhc
Confidence 2223322222222 235667788889999999999876 5554432 343 35666653100
Q ss_pred ---------CcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC------CC--------------CcEEEEeec--CHHH
Q 012095 402 ---------SEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG------DD--------------TCIRISYAA--SLTT 450 (471)
Q Consensus 402 ---------~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~------~~--------------~~iRis~~~--~~e~ 450 (471)
....+.....+..++.+.|.++ ||.+.+|.... .. ..+|+.... ++++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ed 372 (394)
T 1o69_A 294 LNACQKDINISQKNITLHPKISKLIEDLKNK-QIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDD 372 (394)
T ss_dssp SCCCCEEEECCCCCCCCCHHHHHHHHHHHHT-TCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHH
T ss_pred cccccccccccccccccccCHHHHHHHHHHc-CCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHH
Confidence 0000000001456788887764 99999985320 00 234444443 8999
Q ss_pred HHHHHHHHHHHHH
Q 012095 451 LQAAVERIKKGLL 463 (471)
Q Consensus 451 i~~~~~~l~~~l~ 463 (471)
++++++.|+++++
T Consensus 373 i~~~~~~l~~~~~ 385 (394)
T 1o69_A 373 VYEISKLILKSIK 385 (394)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.8e-28 Score=241.25 Aligned_cols=281 Identities=15% Similarity=0.183 Sum_probs=203.1
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH----HHHcCCEEEEe
Q 012095 131 NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVIL 206 (471)
Q Consensus 131 ~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~G~~~~~v 206 (471)
.+...+|++.+++++ |. +++++++++++++..++++++++||.|++++|+|.++... ++..|++++.+
T Consensus 58 ~~~~~~l~~~la~~~----g~----~~~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v 129 (389)
T 3acz_A 58 NPTVEQFEEMVCSIE----GA----AGSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLI 129 (389)
T ss_dssp CHHHHHHHHHHHHHH----TC----SEEEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred ChHHHHHHHHHHHHh----CC----CeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEE
Confidence 444567777777775 42 2666677778999999999999999999999999987655 57789999999
Q ss_pred cCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCcccccc
Q 012095 207 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS 286 (471)
Q Consensus 207 ~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~ 286 (471)
+. .|++++++++++++++|++++|+||||.+++ +++|.++|++| ++++|+||+|..+.+. .++ .
T Consensus 130 ~~-------~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~-~~~livD~~~~~~~~~----~~~-~ 193 (389)
T 3acz_A 130 DT-------SDVEKVKAAWKPNTKMVYLESPANPTCKVSD---IKGIAVVCHER-GARLVVDATFTSPCFL----KPL-E 193 (389)
T ss_dssp CT-------TCHHHHHHTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHH-TCEEEEECTTTCTTTC----CGG-G
T ss_pred CC-------CCHHHHHHhcCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCcccccc----Ccc-c
Confidence 86 3899999999989999999999999999999 89999999999 9999999999875432 111 1
Q ss_pred CCCCCCceEEEecCCcccCccchhh-eeeEcCH-HHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHH
Q 012095 287 LPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPK-HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364 (471)
Q Consensus 287 ~~~~~~~~i~~~S~SK~~g~~G~R~-G~v~~~~-~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~ 364 (471)
.+..+++.|+||.++.+|.|+ ||+++++ ++++.+......++.+.+++.+.++...|+. ....++ +.
T Consensus 194 ----~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~---l~~r~~----~~ 262 (389)
T 3acz_A 194 ----LGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKT---LPIRMQ----IH 262 (389)
T ss_dssp ----TTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT---HHHHHH----HH
T ss_pred ----cCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcCccH---HHHHHH----HH
Confidence 356699999999999899998 9999998 9999988776656666788887777777753 122233 33
Q ss_pred HHHHHHHHHHhcCC--------------CCCeeeCC----CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCE
Q 012095 365 RERRDFLVKSFGEL--------------EGVKMSEP----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426 (471)
Q Consensus 365 ~~~r~~l~~~L~~~--------------~g~~~~~p----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV 426 (471)
.++++.+.+.|++. |++.+..+ .+++ +.+.++ ...+ ...++++.||
T Consensus 263 ~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~-~~~~l~--------------~~~~-~~~~l~~~~i 326 (389)
T 3acz_A 263 MENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGST-FLFEMK--------------SFEA-AKKLMEHLKV 326 (389)
T ss_dssp HHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSE-EEEEES--------------SHHH-HHHHHTTCSS
T ss_pred HHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeE-EEEEEC--------------CHHH-HHHHHHhCCC
Confidence 33344444444332 23333221 2454 555664 2223 3445566688
Q ss_pred EEEC---C------CCC----------------CC-CCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012095 427 ALVP---G------DAF----------------GD-DTCIRISYAASLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 427 ~v~p---g------~~f----------------~~-~~~iRis~~~~~e~i~~~~~~l~~~l~~ 464 (471)
.+.+ | ..+ |. +++||+|++.. +.++.++.|.+++++
T Consensus 327 ~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~--~~~~li~~l~~al~~ 388 (389)
T 3acz_A 327 CTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIE--NVDDIIADLKQALEL 388 (389)
T ss_dssp SEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSS--CHHHHHHHHHHHHTC
T ss_pred cEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccC--CHHHHHHHHHHHHhh
Confidence 7776 4 221 11 47899999984 566677777777653
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-27 Score=239.84 Aligned_cols=299 Identities=19% Similarity=0.204 Sum_probs=209.5
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEE
Q 012095 107 FDTPVLIAEAGINAIREGFTRYTPN--AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVII 184 (471)
Q Consensus 107 ~~~p~~v~~a~~~~~~~~~~~Y~~~--~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv 184 (471)
++.|+.+.+++. ..+.+.|+.. ....++++.+++++ | .+++++++|+++++..++++++++||+|++
T Consensus 32 ~~~~~~~~~~~~---~~~~~~y~~~~~~~~~~l~~~la~~~----g----~~~~~~~~~gt~a~~~al~~l~~~gd~vi~ 100 (412)
T 2cb1_A 32 FKTLEEGQERFA---TGEGYVYARQKDPTAKALEERLKALE----G----ALEAVVLASGQAATFAALLALLRPGDEVVA 100 (412)
T ss_dssp CSSHHHHHHHHH---HCCSCSBTTTCCHHHHHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHTTCCTTCEEEE
T ss_pred cCChHHHHHHhc---cccCcCcCCCCChHHHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 455666666553 3344567643 34566777766665 4 248999999999999999999999999999
Q ss_pred cCCCCCChHHH----HHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhC
Q 012095 185 PAPFWVSYPEM----ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 260 (471)
Q Consensus 185 ~~p~y~~~~~~----~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~ 260 (471)
++|+|.++... ++..|++++.++. |+++|++++++++++|++++|+||||.+++ +++|+++|++|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~l~~~i~~~~~~v~~~~~~n~~G~~~~---l~~i~~l~~~~ 169 (412)
T 2cb1_A 101 AKGLFGQTIGLFGQVLSLMGVTVRYVDP--------EPEAVREALSAKTRAVFVETVANPALLVPD---LEALATLAEEA 169 (412)
T ss_dssp ETTCCHHHHHHHHHTTTTTTCEEEEECS--------SHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHH
T ss_pred eCCCchhHHHHHHHHHHHcCCEEEEECC--------CHHHHHHHhccCCeEEEEeCCCCCCccccc---HHHHHHHHHHc
Confidence 99999876654 3457999999874 489999999989999999999999999998 99999999999
Q ss_pred CCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCH----------------------
Q 012095 261 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK---------------------- 318 (471)
Q Consensus 261 ~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~---------------------- 318 (471)
++++|+||+|..+.+.. ... ..+..+++.|+||.++.+|+|+||+++.+
T Consensus 170 -~~~li~D~~~~~~~~~~---~~~-----~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 240 (412)
T 2cb1_A 170 -GVALVVDNTFGAAGALC---RPL-----AWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPW 240 (412)
T ss_dssp -TCEEEEECGGGTTTTSC---CGG-----GGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------H
T ss_pred -CCEEEEECCCccccccC---Ccc-----ccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchh
Confidence 99999999998752111 111 13567999999999988999999988543
Q ss_pred ------HHHHHHHHHH-hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeee-CCC---
Q 012095 319 ------HFVAACNKIQ-SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQ--- 387 (471)
Q Consensus 319 ------~~i~~l~~~~-~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~-~p~--- 387 (471)
++.+.++... .....+.++....++...++. +....++..++.+.+.+.|.+.+++.+. .|.
T Consensus 241 ~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~-------l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~ 313 (412)
T 2cb1_A 241 EALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLET-------VALRVARMSETARFLAERLQGHPKVKALRYPGLPE 313 (412)
T ss_dssp HHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGG-------HHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTT
T ss_pred hccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCch-------HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCC
Confidence 3445554433 222333455544443333332 3444555667888889999888888743 221
Q ss_pred -------------cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC---------CC-----------
Q 012095 388 -------------GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD---------AF----------- 434 (471)
Q Consensus 388 -------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~---------~f----------- 434 (471)
.+.++.+.+ . +.+.+.+ ++++.||.+ .|+ .+
T Consensus 314 ~p~~~~~~~~~~~~~~iv~~~~-~-------------~~~~~~~-~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~ 377 (412)
T 2cb1_A 314 DPAHRNARKYLASGGPILTLDL-G-------------DLERASR-FLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEE 377 (412)
T ss_dssp CTTHHHHHHHCSSSCSEEEEEC-S-------------SHHHHHH-HHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHH
T ss_pred CccHHHHHHhCCCCceEEEEEe-C-------------CHHHHHH-HHHhCCeee-ecccCCCcceeecCcccccccCCHH
Confidence 233355565 2 3445554 455569998 764 11
Q ss_pred -----C-CCCcEEEEeec--CHHHHHHHHHHHH
Q 012095 435 -----G-DDTCIRISYAA--SLTTLQAAVERIK 459 (471)
Q Consensus 435 -----~-~~~~iRis~~~--~~e~i~~~~~~l~ 459 (471)
| .++.||+|++. ++++++.+++.|+
T Consensus 378 ~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~ 410 (412)
T 2cb1_A 378 ARLQAGVTPGLVRVSVGLEDPLDLLALFEEALE 410 (412)
T ss_dssp HHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHh
Confidence 1 04789999998 5567777776664
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-27 Score=242.17 Aligned_cols=283 Identities=15% Similarity=0.172 Sum_probs=206.7
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH----HHHcCCEEEEecCC
Q 012095 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTR 209 (471)
Q Consensus 134 ~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~G~~~~~v~~~ 209 (471)
..++++.+++++ |. .+.|++++|+ +++..++++++++||+|++++|.|.++... ++..|++++.++.+
T Consensus 116 ~~~l~~~lA~l~----g~---~~~v~~~sG~-~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~ 187 (445)
T 1qgn_A 116 TVVLEEKISALE----GA---ESTLLMASGM-CASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPA 187 (445)
T ss_dssp HHHHHHHHHHHH----TC---SEEEEESCHH-HHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSS
T ss_pred HHHHHHHHHHHh----CC---CcEEEeCCHH-HHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC
Confidence 346666666664 52 2456665555 999999999999999999999999987764 45689999999863
Q ss_pred CCCCCcCCHHHHHhhhccCC-cEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCC
Q 012095 210 ISENFLLDPKVLESKLTEKS-RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 288 (471)
Q Consensus 210 ~~~~~~ld~e~l~~~l~~~~-~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 288 (471)
|++++++++++++ ++|++++|+||||.+++ +++|+++|++| ++++|+|++|...... .+ ..
T Consensus 188 -------d~~~l~~ai~~~tv~lV~le~p~NptG~v~d---l~~I~~la~~~-g~~livD~a~~~~~~~----~~-~~-- 249 (445)
T 1qgn_A 188 -------DVGALELALNQKKVNLFFTESPTNPFLRCVD---IELVSKLCHEK-GALVCIDGTFATPLNQ----KA-LA-- 249 (445)
T ss_dssp -------CHHHHHHHHHHSCEEEEEEESSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTCTTTC----CT-TT--
T ss_pred -------CHHHHHHHhccCCCCEEEEeCCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCCcccccC----Cc-cc--
Confidence 8999999999899 99999999999999999 88999999999 9999999999854221 11 11
Q ss_pred CCCCceEEEecCCcccCccc-hhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Q 012095 289 GMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367 (471)
Q Consensus 289 ~~~~~~i~~~S~SK~~g~~G-~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~ 367 (471)
.+..+++.|+||.+|..| .++||+++++++++.+......+..+++++...++...++ .+....+++.++
T Consensus 250 --~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~-------~l~~r~~~~~~~ 320 (445)
T 1qgn_A 250 --LGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMK-------TLHLRVQQQNST 320 (445)
T ss_dssp --TTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGG-------GHHHHHHHHHHH
T ss_pred --cCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHHHHhCCCCCHHHHHHHHHhHH-------HHHHHHHHHHHH
Confidence 345699999999997444 3799999999999988876665555566666555544443 244455666777
Q ss_pred HHHHHHHhcCCCCC-eeeCC----------------CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEEC
Q 012095 368 RDFLVKSFGELEGV-KMSEP----------------QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 430 (471)
Q Consensus 368 r~~l~~~L~~~~g~-~~~~p----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~p 430 (471)
++.+.+.|++.|++ .+..| ..+.++++.++... .+...+.+.| +..++.+..
T Consensus 321 a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~----------~~~~~~l~~l-~~~~i~~s~ 389 (445)
T 1qgn_A 321 ALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDL----------LTTAKFVDAL-KIPYIAPSF 389 (445)
T ss_dssp HHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCH----------HHHHHHHHHC-SSSEECSCC
T ss_pred HHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCH----------HHHHHHHHhC-CCceEeccC
Confidence 88889999888777 44433 12334677776310 0234455543 223677777
Q ss_pred CCCC----------------------CC-CCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012095 431 GDAF----------------------GD-DTCIRISYAASLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 431 g~~f----------------------~~-~~~iRis~~~~~e~i~~~~~~l~~~l~~ 464 (471)
|+.+ |. ++.||+|++. |+++++++.|+++++.
T Consensus 390 G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG~--Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 390 GGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGV--EDFDDLKADILQALDS 444 (445)
T ss_dssp CSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCS--SCHHHHHHHHHHHHHH
T ss_pred CCCceeeecccccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHhh
Confidence 7643 22 4789999994 5788999999888864
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.8e-28 Score=241.78 Aligned_cols=284 Identities=15% Similarity=0.132 Sum_probs=211.1
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEe
Q 012095 131 NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVIL 206 (471)
Q Consensus 131 ~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~G~~~~~v 206 (471)
.+...+|++.+++++ | .+++++++|+++++..++++++++||.|++++|+|.++...+ +..|.+++.+
T Consensus 65 ~~~~~~l~~~la~~~----g----~~~~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v 136 (392)
T 3qhx_A 65 NPTRTALEAALAAVE----D----AAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPV 136 (392)
T ss_dssp CHHHHHHHHHHHHHT----T----CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEE
T ss_pred ChHHHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEe
Confidence 344556677776664 3 247899999999999999999999999999999998877665 6789999999
Q ss_pred cCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCcccccc
Q 012095 207 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS 286 (471)
Q Consensus 207 ~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~ 286 (471)
+.+ |++++++++++++++|++++|+||||.+.+ +++|+++|++| ++++|+|++|....... . ..
T Consensus 137 ~~~-------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~-g~~li~D~~~~~~~~~~----~-~~ 200 (392)
T 3qhx_A 137 ALA-------DLDAVRAAIRPTTRLIWVETPTNPLLSIAD---IAGIAQLGADS-SAKVLVDNTFASPALQQ----P-LS 200 (392)
T ss_dssp CTT-------CHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHH-TCEEEEECTTTCTTTCC----G-GG
T ss_pred CCC-------CHHHHHHhhCCCCeEEEEECCCCCCcEEec---HHHHHHHHHHc-CCEEEEECCCcccccCC----h-HH
Confidence 863 899999999999999999999999999999 99999999999 99999999998542211 1 11
Q ss_pred CCCCCCceEEEecCCcccCccc-hhheeeEcC-HHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHH
Q 012095 287 LPGMWERTLTVNGFSKAFAMTG-WRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364 (471)
Q Consensus 287 ~~~~~~~~i~~~S~SK~~g~~G-~R~G~v~~~-~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~ 364 (471)
.+..+++.|+||.+|.+| .|+||++++ +++++.+.......+.+++++.+.++...++. +....++.
T Consensus 201 ----~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~-------l~~~~~~~ 269 (392)
T 3qhx_A 201 ----LGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKT-------LVLRMQRH 269 (392)
T ss_dssp ----GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-------HHHHHHHH
T ss_pred ----hCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhH-------HHHHHHHH
Confidence 245599999999998767 799999997 68989888877777778888888887777653 33445566
Q ss_pred HHHHHHHHHHhcCCCCCeee-CCC----------------cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEE
Q 012095 365 RERRDFLVKSFGELEGVKMS-EPQ----------------GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 427 (471)
Q Consensus 365 ~~~r~~l~~~L~~~~g~~~~-~p~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~ 427 (471)
.++++.+.+.|++.+++... .|. .|..+++.++... .....|.+.| +..++.
T Consensus 270 ~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~----------~~~~~~~~~l-~~~~~~ 338 (392)
T 3qhx_A 270 SENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGR----------TAAEQLCAKT-NIFILA 338 (392)
T ss_dssp HHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCH----------HHHHHHHHHC-SSSEEC
T ss_pred HHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcH----------HHHHHHHHhC-CCceEC
Confidence 67777788888887665332 221 1334778886410 1345666654 345777
Q ss_pred EECCCCCC--------------------CCCcEEEEeecCHHHHHHHHHHHHHHH
Q 012095 428 LVPGDAFG--------------------DDTCIRISYAASLTTLQAAVERIKKGL 462 (471)
Q Consensus 428 v~pg~~f~--------------------~~~~iRis~~~~~e~i~~~~~~l~~~l 462 (471)
+..|+.+. .++.||||++.. +.++.++.|.+++
T Consensus 339 ~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e--~~~~~i~~l~~al 391 (392)
T 3qhx_A 339 ESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIE--DVADLLDDLKQAL 391 (392)
T ss_dssp SCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSS--CHHHHHHHHHHHH
T ss_pred CCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEeccC--CHHHHHHHHHHHh
Confidence 77776532 246799999972 3344445554443
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-28 Score=250.44 Aligned_cols=331 Identities=13% Similarity=0.085 Sum_probs=240.7
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC-------CCcEEEeCChHHHHHHHHHHhcCC----
Q 012095 110 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYT-------PDQILVSNGAKQSILQAVLAVCSP---- 178 (471)
Q Consensus 110 p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~-------~~~i~it~G~~~al~~~~~~l~~~---- 178 (471)
|..+.+++..++......|...++..++++.+++++.+.+|.+.+ ..++++|+|+++++..++.++.++
T Consensus 87 ~~~~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~ 166 (486)
T 1js3_A 87 PAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRR 166 (486)
T ss_dssp HHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhh
Confidence 456778888887665667777777889999999999999997532 257899999999998888765421
Q ss_pred -----CC--------e--EEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCc------EEEEcCC
Q 012095 179 -----GD--------E--VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSR------LLILCSP 237 (471)
Q Consensus 179 -----gd--------~--Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~------~i~i~~p 237 (471)
|| . |++++++|.++...++..|++++.+|++ .++.+|+++|+++++++++ +|++++|
T Consensus 167 ~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d--~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~ 244 (486)
T 1js3_A 167 LQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSD--GKFAMRASALQEALERDKAAGLIPFFVVATLG 244 (486)
T ss_dssp HHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBS
T ss_pred hhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeecC--CCCCCCHHHHHHHHHHHHhCCCCceEEEEeCC
Confidence 43 3 7889999999999999999999999985 4678999999999976653 7788999
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccc-cccCCCCCCceEEEecCCcccCccchhheeeEc
Q 012095 238 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS-FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 316 (471)
Q Consensus 238 ~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~ 316 (471)
+||||.+-+ +++|+++|++| ++++++|++|+.+.+....... +..+. +-..++.+++|.++++ +++||+++
T Consensus 245 ~n~tG~~~~---l~~I~~la~~~-~~~lhvD~a~g~~~~~~~~~~~~~~g~~---~adsi~~~~hK~~~~p-~~~G~l~~ 316 (486)
T 1js3_A 245 TTSCCSFDN---LLEVGPICHEE-DIWLHVDAAYAGSAFICPEFRHLLNGVE---FADSFNFNPHKWLLVN-FDCSAMWV 316 (486)
T ss_dssp CTTTCCBCC---HHHHHHHHHHT-TCEEEEECTTGGGGGGSTTTGGGGTTGG---GCSEEEECHHHHSSCC-SSCEEEEE
T ss_pred CCCCCCCCC---HHHHHHHHHHc-CCEEEEehhhHHHHHHCHHHHHHhcCcc---ccCeeEEchhhhcCCC-cceEEEEE
Confidence 999999877 99999999999 9999999999976542211111 11121 2225567899999855 89999998
Q ss_pred CHH-H-HHHHHH----HHh--c--------------ccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHH
Q 012095 317 PKH-F-VAACNK----IQS--Q--------------FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 374 (471)
Q Consensus 317 ~~~-~-i~~l~~----~~~--~--------------~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~ 374 (471)
+++ . .+.+.. +.. . .+.....+.+.++...+. .++++++.+++.++++++.+.
T Consensus 317 ~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g-----~~g~~~~~~~~~~~a~~l~~~ 391 (486)
T 1js3_A 317 KRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYG-----VKGLQAYIRKHVQLSHEFEAF 391 (486)
T ss_dssp SCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHH
Confidence 643 2 333311 000 0 000123455555555543 467888899999999999999
Q ss_pred hcCCCCCeee-CCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec---CHHH
Q 012095 375 FGELEGVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTT 450 (471)
Q Consensus 375 L~~~~g~~~~-~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~---~~e~ 450 (471)
|.+++|+++. +|..+++.| +++..- ....++.++|.+++.+++.+ ..++..+++|++++. ++++
T Consensus 392 L~~~~~~~~~~~~~~~~v~f-~~~~~~----------~~~~~l~~~L~~~g~~~~~~-~~~~~~~~lRi~~~~~~~t~~d 459 (486)
T 1js3_A 392 VLQDPRFEVCAEVTLGLVCF-RLKGSD----------GLNEALLERINSARKIHLVP-CRLRGQFVLRFAICSRKVESGH 459 (486)
T ss_dssp HHHCTTEEECSCCCSSEEEE-EESSCH----------HHHHHHHHHHHHHTSCBCEE-EEETTEEEEEEECCCTTCCHHH
T ss_pred HhcCCCeEEeCCCceeEEEE-EecChH----------HHHHHHHHHHHhcCCEEEEE-EEECCEEEEEEEeCCCCCCHHH
Confidence 9998899886 466676554 554210 02477888888774344444 335556799999864 7899
Q ss_pred HHHHHHHHHHHHHhhCC
Q 012095 451 LQAAVERIKKGLLTLRP 467 (471)
Q Consensus 451 i~~~~~~l~~~l~~~~~ 467 (471)
+++++++|+++++++..
T Consensus 460 i~~~~~~l~~~~~~~~~ 476 (486)
T 1js3_A 460 VRLAWEHIRGLAAELLA 476 (486)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999876543
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-27 Score=236.77 Aligned_cols=307 Identities=16% Similarity=0.183 Sum_probs=224.1
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCC
Q 012095 110 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPF 188 (471)
Q Consensus 110 p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~ 188 (471)
++.+.+++.+.+..+ .|++..+..++++.++++++ .+++++++|+++++..++.++ +++||+|+++.|+
T Consensus 16 ~~~~~~a~~~~~~~~--~~~~~~~~~~l~~~la~~~~--------~~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~ 85 (373)
T 3frk_A 16 EYEIKFKFEEIYKRN--WFILGDEDKKFEQEFADYCN--------VNYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNT 85 (373)
T ss_dssp HHHHHHHHHHHHHHT--CCSSSHHHHHHHHHHHHHHT--------SSEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTS
T ss_pred CHHHHHHHHHHHHCC--CccCCchHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCC
Confidence 567788888877664 46677788999999999973 248999999999999999999 8999999999999
Q ss_pred CCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEc
Q 012095 189 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 268 (471)
Q Consensus 189 y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~D 268 (471)
|.++...++..|++++.+++++ +++.+|++++++++++++++|+ |+||||...+ +++|.++|++| ++++|+|
T Consensus 86 ~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~---l~~i~~l~~~~-~~~li~D 157 (373)
T 3frk_A 86 FIATALAVSYTGAKPIFVEPDI-RTYNIDPSLIESAITEKTKAII---AVHLYGQPAD---MDEIKRIAKKY-NLKLIED 157 (373)
T ss_dssp CTHHHHHHHHHSCEEEEECEET-TTTEECGGGTGGGCCTTEEEEE---EECCTTCCCC---HHHHHHHHHHH-TCEEEEE
T ss_pred cHHHHHHHHHcCCEEEEEeccc-cccCcCHHHHHHhcCCCCeEEE---EECCCcCccc---HHHHHHHHHHc-CCEEEEE
Confidence 9999999999999999999875 3578999999999988888887 7889999998 88999999999 9999999
Q ss_pred cCCCccc-cCCCCccccccCCCCCCceEEEecCC--cccCccchhheeeEcC-HHHHHHHHHHHhcc------------c
Q 012095 269 EIYEHII-YAPATHTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAGP-KHFVAACNKIQSQF------------T 332 (471)
Q Consensus 269 e~y~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~g~~G~R~G~v~~~-~~~i~~l~~~~~~~------------~ 332 (471)
++|..+. +++. ....+ ..+.+.||| |.++..| +.|+++++ +++++.+....... +
T Consensus 158 ~a~~~g~~~~~~---~~~~~-----~d~~~~S~~~~K~l~~~g-~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~ 228 (373)
T 3frk_A 158 AAQAHGSLYKGM---KVGSL-----GDAAGFSFYPAKNLGSLG-DGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFN 228 (373)
T ss_dssp CTTCTTCEETTE---ETTSS-----SSEEEEECCTTSSSCCSS-SCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCB
T ss_pred CCcccCCEECCE---ecccc-----ccEEEEeCcCCCccCccc-eeEEEEeCCHHHHHHHHHHHhcCcccCCcccccccc
Confidence 9998633 2221 11111 137888887 8886324 47888876 56777777654421 2
Q ss_pred CCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC-CCcceEEe--EecCCccCCcccCCCC
Q 012095 333 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLF--IDFSTYYGSEAEGFGK 409 (471)
Q Consensus 333 ~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~-p~~g~~~~--~~~~~~~~~~~~~~~~ 409 (471)
+..+.+...++...+. .+++..++.++.++++.+.|.+++ +.+.. +.+....| +.+..
T Consensus 229 ~~~~~~~aa~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~----------- 289 (373)
T 3frk_A 229 SRLDELQAGFLRVKLK-------YLDKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIRS----------- 289 (373)
T ss_dssp CCCCHHHHHHHHHHHH-------THHHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEEE-----------
T ss_pred CCCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEEe-----------
Confidence 2234444443333332 345666777788888899998874 55432 22221111 12211
Q ss_pred CCCHHHHHHHHHHcCCEEEECCCCCC-----------C------------CCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012095 410 IENSESLCRYLLDKAQVALVPGDAFG-----------D------------DTCIRISYAA--SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 410 ~~~~~~l~~~Ll~~~gV~v~pg~~f~-----------~------------~~~iRis~~~--~~e~i~~~~~~l~~~l~~ 464 (471)
.+..++.+.|.++ ||.+.++.... . .+.+|+++.. +++|++++++.|+++..+
T Consensus 290 -~~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~ 367 (373)
T 3frk_A 290 -EKRDELQKYLNNN-GIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLE 367 (373)
T ss_dssp -SSHHHHHHHHHHT-TBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC--
T ss_pred -CCHHHHHHHHHHC-CCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhh
Confidence 1577888888776 99998765211 0 1469999987 999999999998876543
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-27 Score=235.24 Aligned_cols=302 Identities=18% Similarity=0.241 Sum_probs=225.6
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCC
Q 012095 110 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPF 188 (471)
Q Consensus 110 p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~ 188 (471)
++++.+++.+.+..+ .|.+..+..++++.++++++ .+++++++|+++++..++.++ +++||+|+++.|+
T Consensus 15 ~~~v~~a~~~~~~~~--~~~~~~~~~~l~~~la~~~~--------~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~ 84 (367)
T 3nyt_A 15 KDKIDAGIQRVLRHG--QYILGPEVTELEDRLADFVG--------AKYCISCANGTDALQIVQMALGVGPGDEVITPGFT 84 (367)
T ss_dssp HHHHHHHHHHHHHHC--CCSSCHHHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSS
T ss_pred CHHHHHHHHHHHhcC--CccCChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCc
Confidence 567888888877664 56677788999999999873 248999999999999999999 8999999999999
Q ss_pred CCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEc
Q 012095 189 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 268 (471)
Q Consensus 189 y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~D 268 (471)
|.++...++..|++++.++++++ ++.+|++++++++++++++|+ |+||||...+ +++|.++|++| +++||+|
T Consensus 85 ~~~~~~~~~~~G~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~---~~~i~~la~~~-~~~li~D 156 (367)
T 3nyt_A 85 YVATAETVALLGAKPVYVDIDPR-TYNLDPQLLEAAITPRTKAII---PVSLYGQCAD---FDAINAIASKY-GIPVIED 156 (367)
T ss_dssp CTHHHHHHHHTTCEEEEECBCTT-TCSBCGGGTGGGCCTTEEEEC---CBCGGGCCCC---HHHHHHHHHHT-TCCBEEE
T ss_pred cHHHHHHHHHcCCEEEEEecCCc-cCCcCHHHHHHhcCcCCcEEE---eeCCccChhh---HHHHHHHHHHc-CCEEEEE
Confidence 99999999999999999998754 478999999999988888877 8889999888 88999999999 9999999
Q ss_pred cCCCccc-cCCCCccccccCCCCCCceEEEecC--CcccCccchhheeeEc-CHHHHHHHHHHHhc------------cc
Q 012095 269 EIYEHII-YAPATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAG-PKHFVAACNKIQSQ------------FT 332 (471)
Q Consensus 269 e~y~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~g~~G~R~G~v~~-~~~~i~~l~~~~~~------------~~ 332 (471)
++|..+. +++. .+..+ + .+++.|| +|.++.+|. .||+++ ++++++.+...... ++
T Consensus 157 ~a~~~g~~~~~~---~~~~~----~-di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~ 227 (367)
T 3nyt_A 157 AAQSFGASYKGK---RSCNL----S-TVACTSFFPSAPLGCYGD-GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVN 227 (367)
T ss_dssp CTTTTTCEETTE---ETTSS----S-SEEEEECCTTSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCB
T ss_pred CccccCCeECCe---eccCC----C-CEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcC
Confidence 9998532 3321 11111 1 4888897 899985476 899888 57788888776542 24
Q ss_pred CCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC-CCc---ceE-EeEecCCccCCcccCC
Q 012095 333 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQG---AFY-LFIDFSTYYGSEAEGF 407 (471)
Q Consensus 333 ~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~-p~~---g~~-~~~~~~~~~~~~~~~~ 407 (471)
+..+.+.+.++...++. +++..++.++.++++.+.|.++ |+.+.. +.+ .++ +++.++
T Consensus 228 ~~~~~~~aa~~~~~l~~-------~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~---------- 289 (367)
T 3nyt_A 228 SRLDTLQAAILLPKLEI-------FEEEIALRQKVAAEYDLSLKQV-GIGTPFIEVNNISVYAQYTVRMD---------- 289 (367)
T ss_dssp CCCCHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCTTEECCCSSEEEECS----------
T ss_pred CCccHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhccC-CeeccCCCCCCceeeEEEEEEeC----------
Confidence 55677766666665553 3445556666777777888776 444322 121 121 233332
Q ss_pred CCCCCHHHHHHHHHHcCCEEEECCCC--------CC-C-----------CCcEEEEeec--CHHHHHHHHHHHHHH
Q 012095 408 GKIENSESLCRYLLDKAQVALVPGDA--------FG-D-----------DTCIRISYAA--SLTTLQAAVERIKKG 461 (471)
Q Consensus 408 ~~~~~~~~l~~~Ll~~~gV~v~pg~~--------f~-~-----------~~~iRis~~~--~~e~i~~~~~~l~~~ 461 (471)
+..++.+.|.++ ||.+.++.. |. . ...+|+++.. ++++++.+++.|+++
T Consensus 290 ----~~~~l~~~L~~~-GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 290 ----NRESVQASLKAA-GVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp ----SHHHHHHHHHHH-TCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred ----CHHHHHHHHHHC-CCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 567888887766 998887653 11 0 1368999886 899999999988765
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-27 Score=243.71 Aligned_cols=341 Identities=14% Similarity=0.118 Sum_probs=242.7
Q ss_pred hHHH-HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcC--------CC-
Q 012095 110 PVLI-AEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS--------PG- 179 (471)
Q Consensus 110 p~~v-~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~--------~g- 179 (471)
|..+ .+.+...+......|...++..++++.+.+++.+.+|.+.+.+++++|+|+++++..++.++.+ +|
T Consensus 105 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~ 184 (504)
T 2okj_A 105 IIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGM 184 (504)
T ss_dssp HHHHHHHHHHHHHCCBSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCG
T ss_pred HHHHHHHHHHHhhccCCCchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCc
Confidence 4444 3455544444445676666778899999999999999754478999999999999998888753 56
Q ss_pred ----C-eEEEcCCCCCChHHHHHHcCC---EEEEecCCCCCCCcCCHHHHHhhhcc------CCcEEEEcCCCCCcccCC
Q 012095 180 ----D-EVIIPAPFWVSYPEMARIADA---TPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVY 245 (471)
Q Consensus 180 ----d-~Vlv~~p~y~~~~~~~~~~G~---~~~~v~~~~~~~~~ld~e~l~~~l~~------~~~~i~i~~p~NPtG~~~ 245 (471)
+ .|+++++.|+++...++.+|. +++.+|++ .++.+|+++|++++++ ++++|++++|+||||.+.
T Consensus 185 ~~~~~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~ 262 (504)
T 2okj_A 185 AAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFD 262 (504)
T ss_dssp GGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBC
T ss_pred cccCCeEEEECCcchHHHHHHHHHcCCCcccEEEEecC--CCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcC
Confidence 6 799999999999999999887 89999985 3578999999999975 588999999999999998
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCH-HHHHHH
Q 012095 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAAC 324 (471)
Q Consensus 246 ~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~-~~i~~l 324 (471)
+ +++|+++|++| ++++++|++|..+.+....... .+.+.....+++.+++|.++.| .++|++++++ ++++..
T Consensus 263 ~---l~~I~~la~~~-g~~lhvD~a~~~~~~~~~~~~~--~~~g~~~~D~i~~~~hK~~~~p-~~~g~l~~~~~~~~~~~ 335 (504)
T 2okj_A 263 P---IQEIADICEKY-NLWLHVDAAWGGGLLMSRKHRH--KLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGC 335 (504)
T ss_dssp C---HHHHHHHHHHH-TCEEEEEETTGGGGGGCTTTGG--GGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHH
T ss_pred C---HHHHHHHHHHc-CCEEEEehhhhhHHHhCHhhHh--hcCCcccCCEEEECchhhcCCC-cceEEEEEECHHHHHHH
Confidence 8 99999999999 9999999999987653221111 1221113347788999999844 7899999875 465543
Q ss_pred HHHHhcccC---------------------CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCee
Q 012095 325 NKIQSQFTS---------------------GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 383 (471)
Q Consensus 325 ~~~~~~~~~---------------------~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~ 383 (471)
......+.. ....+.+.++..++. .+.++++.++..++++++.+.|++++|+++
T Consensus 336 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg-----~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~ 410 (504)
T 2okj_A 336 NQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG-----TVGFENQINKCLELAEYLYAKIKNREEFEM 410 (504)
T ss_dssp HCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTTCTTEEE
T ss_pred hcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 211111110 013566666666664 456888888999999999999999889988
Q ss_pred eC---CCcceEEeEecCCccCCcccC----CCCCCCHHHHHHHHHHcCCEEEECCCCCCC-CCcEEEEee---cCHHHHH
Q 012095 384 SE---PQGAFYLFIDFSTYYGSEAEG----FGKIENSESLCRYLLDKAQVALVPGDAFGD-DTCIRISYA---ASLTTLQ 452 (471)
Q Consensus 384 ~~---p~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~-~~~iRis~~---~~~e~i~ 452 (471)
.. |..++++|...+........+ ........++.+.|.+++.+.+.++. +.. .+++|++++ .++++++
T Consensus 411 ~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~-~~~~~~~lRis~~~~~~t~edi~ 489 (504)
T 2okj_A 411 VFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQP-QGDKANFFRMVISNPAATQSDID 489 (504)
T ss_dssp SSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEE-ETTEEEEEEECCCCTTCCHHHHH
T ss_pred EecCCCCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeE-ECCceEEEEEEeCCCCCCHHHHH
Confidence 74 777877765544311000000 00000135788888887334444332 332 368999997 3889999
Q ss_pred HHHHHHHHHHHhh
Q 012095 453 AAVERIKKGLLTL 465 (471)
Q Consensus 453 ~~~~~l~~~l~~~ 465 (471)
+++++|+++++++
T Consensus 490 ~~~~~l~~~~~~~ 502 (504)
T 2okj_A 490 FLIEEIERLGQDL 502 (504)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987654
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=239.08 Aligned_cols=285 Identities=14% Similarity=0.119 Sum_probs=202.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH----HHHHcCCEEEE
Q 012095 130 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVI 205 (471)
Q Consensus 130 ~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~G~~~~~ 205 (471)
+..+..++|+.+++++ |. ++.++++++++++..+++ ++++||+|+++.|.|++... .++..|++++.
T Consensus 53 ~~~~~~~lr~~la~~~----g~----~~~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~ 123 (393)
T 1n8p_A 53 QNPNRENLERAVAALE----NA----QYGLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSF 123 (393)
T ss_dssp CCHHHHHHHHHHHHHT----TC----SEEEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEE
T ss_pred CChhHHHHHHHHHHHh----CC----CcEEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEE
Confidence 3445678888888875 32 256666666999999999 89999999999999985444 34667999999
Q ss_pred ecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC---CeEEEEccCCCccccCCCCcc
Q 012095 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP---RLLVLSDEIYEHIIYAPATHT 282 (471)
Q Consensus 206 v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~---~~~ii~De~y~~~~~~~~~~~ 282 (471)
++++ | +++++++++++++|++++|+||||.+++ +++|.++|++|+ ++++|+|++|..+.+.
T Consensus 124 v~~~-------d-~~l~~~i~~~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~~----- 187 (393)
T 1n8p_A 124 TNDL-------L-NDLPQLIKENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYIS----- 187 (393)
T ss_dssp ESSH-------H-HHHHHHSCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-----
T ss_pred eCCC-------h-HHHHHhcccCceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCccccccC-----
Confidence 9863 7 8999999888999999999999999999 889999999873 7999999999986552
Q ss_pred ccccCCCCCCceEEEecCCcccCccchhh-eeeEc-CHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHH
Q 012095 283 SFASLPGMWERTLTVNGFSKAFAMTGWRL-GYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 360 (471)
Q Consensus 283 ~~~~~~~~~~~~i~~~S~SK~~g~~G~R~-G~v~~-~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~ 360 (471)
....+ +.++++.|+||.+|.+|+|+ ||+++ ++++++.+......+...++++.+.++...++. +...
T Consensus 188 ~~~~~----~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~-------~~~~ 256 (393)
T 1n8p_A 188 NPLNF----GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKT-------LHLR 256 (393)
T ss_dssp CGGGG----TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-------HHHH
T ss_pred CHHHc----CCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccch-------HHHH
Confidence 11222 45699999999999899999 99998 488999888776655556677776666555543 3444
Q ss_pred HHHHHHHHHHHHHHhcCCCC-Cee-eCC---------------Cc---ceEEeEecCCccCCcccCCCCCCCHHHHHHHH
Q 012095 361 VKAFRERRDFLVKSFGELEG-VKM-SEP---------------QG---AFYLFIDFSTYYGSEAEGFGKIENSESLCRYL 420 (471)
Q Consensus 361 ~~~~~~~r~~l~~~L~~~~g-~~~-~~p---------------~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 420 (471)
.+...++++.+.+.|.+.+. +.. ..| .+ +..+++.++... .+...+.+.|
T Consensus 257 ~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~----------~~~~~~l~~l 326 (393)
T 1n8p_A 257 VRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGA----------EAASKFASST 326 (393)
T ss_dssp HHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCH----------HHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcH----------HHHHHHHhhC
Confidence 55556667777777777644 332 111 11 445778886310 1344555543
Q ss_pred HHcCCEEEECCC----------CC------------CC-CCcEEEEeec--CHHHHHHHHHHHHHH
Q 012095 421 LDKAQVALVPGD----------AF------------GD-DTCIRISYAA--SLTTLQAAVERIKKG 461 (471)
Q Consensus 421 l~~~gV~v~pg~----------~f------------~~-~~~iRis~~~--~~e~i~~~~~~l~~~ 461 (471)
+..++.+..|+ .+ |. ++.||+|++. ++++++.+.+.|+++
T Consensus 327 -~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 327 -RLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp -SSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred -CcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 22345444332 22 11 3689999998 556677777776654
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-27 Score=240.53 Aligned_cols=335 Identities=17% Similarity=0.199 Sum_probs=227.7
Q ss_pred HHHHHHHHHHhcCCC--eEEcCCCCCCCCChHHHHHHHH--HHHHcCCCCCCC-----CCCCHHHHHHHHHHHHHHhCCC
Q 012095 82 AITDQATALAQAGVS--VIRLAAGEPDFDTPVLIAEAGI--NAIREGFTRYTP-----NAGTLELRSAICHKLKEENGLS 152 (471)
Q Consensus 82 ~~~~~~~~~~~~g~~--~i~l~~g~~~~~~p~~v~~a~~--~~~~~~~~~Y~~-----~~G~~~lr~~ia~~~~~~~g~~ 152 (471)
++......+.+.+.. ...++.|.++...|+.+.+.+. +.+ ..|+| .+|..++.+.+.+.+.+.+|.
T Consensus 49 ~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~p~~v~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~- 123 (438)
T 1wyu_A 49 KVLEELRRLAAQNLPAHKAFLGGGVRSHHVPPVVQALAARGEFL----TAYTPYQPEVSQGVLQATFEYQTMIAELAGL- 123 (438)
T ss_dssp HHHHHHHHHHHTSCCCTTCCCCSSCCCCCCCHHHHHHHTSHHHH----HCCSCCSGGGCHHHHHHHHHHHHHHHHHHTS-
T ss_pred HHHHHHHHHHhcCcCccccccCCCccCCcCcHHHHHHHhcchhh----hcCCCCcchhhhhHHHHHHHHHHHHHHHhCC-
Confidence 444444555444432 4578888888877877744442 222 23444 457777788888888888885
Q ss_pred CCCCcEEEeCChHHHHHHHHHH-hcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEecCCCCCCCcCCHHHHHhhhcc
Q 012095 153 YTPDQILVSNGAKQSILQAVLA-VCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRISENFLLDPKVLESKLTE 227 (471)
Q Consensus 153 ~~~~~i~it~G~~~al~~~~~~-l~~~gd~Vlv~~p~y~~~~~~~----~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~ 227 (471)
+++++++++|++.++..+..+ .+++||+|++++++|+++...+ +..|++++.++.. ++.+|+++ +++
T Consensus 124 -~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~---~~~~d~~~----i~~ 195 (438)
T 1wyu_A 124 -EIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLE---GGRTPLPE----VGE 195 (438)
T ss_dssp -SEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCB---TTBCCCCC----CCT
T ss_pred -CccceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCc---CCccCHHH----hCC
Confidence 567899999999443333333 2478999999999999988655 4589999999872 34678776 677
Q ss_pred CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccC---CCccccCCCCccccccCCCCCCceEEEecCCccc
Q 012095 228 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI---YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 304 (471)
Q Consensus 228 ~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~---y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 304 (471)
++++|++++| ||||.+.+ +++|+++|++| ++++++|-. |+.+ ..+ .. .+..+++.| +|.|
T Consensus 196 ~t~~v~i~~p-n~tG~~~~---l~~i~~la~~~-g~~vivd~d~~a~g~~-----~~~--~~----~g~D~~~~s-~kk~ 258 (438)
T 1wyu_A 196 EVGAVVVQNP-NFLGALED---LGPFAEAAHGA-GALFVAVADPLSLGVL-----KPP--GA----YGADIAVGD-GQSL 258 (438)
T ss_dssp TEEEEEEESS-CTTSBCCC---HHHHHHHHHHT-TCEEEEECCTTGGGTB-----CCH--HH----HTCSEEEEE-CTTT
T ss_pred CeEEEEEECC-CCCeEEec---HHHHHHHHHHc-CCEEEEEechhhccCc-----CCC--cc----CCCCEEEEC-Cccc
Confidence 8999999999 99999998 99999999999 999996522 3221 111 11 122355665 5554
Q ss_pred ----CccchhheeeEcCHHHHHHHHHH-------------------------H-hcccCCC---ChHHHHHHHHHHhccC
Q 012095 305 ----AMTGWRLGYIAGPKHFVAACNKI-------------------------Q-SQFTSGA---SSISQKAGVAALGLGY 351 (471)
Q Consensus 305 ----g~~G~R~G~v~~~~~~i~~l~~~-------------------------~-~~~~~~~---~~~~q~aa~~~L~~~~ 351 (471)
++.|+|+||+++++++++.+... + ...+.+. +.+...++..++...
T Consensus 259 ~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~- 337 (438)
T 1wyu_A 259 GLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAAL- 337 (438)
T ss_dssp TCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHH-
T ss_pred CCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHh-
Confidence 46778999999998877654110 0 1112222 222222222223210
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEE--E
Q 012095 352 AGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL--V 429 (471)
Q Consensus 352 ~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v--~ 429 (471)
..+.++++.+++.++++++.+.|++++|+++..+. .+|.++.+... .+..+++++|.++ ||.+ .
T Consensus 338 -~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~~~~~~~~~~-----------~~~~~~~~~L~~~-gi~v~~~ 403 (438)
T 1wyu_A 338 -GPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK-PFFNEFALALP-----------KDPEAVRRALAER-GFHGATP 403 (438)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS-SBCSEEEEECS-----------SCHHHHHHHHHHT-TCCCCEE
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCC-CeEEEEEEeCC-----------CCHHHHHHHHHHC-Cceeccc
Confidence 13557888999999999999999999899887654 34433333211 1678999998876 9998 7
Q ss_pred CCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012095 430 PGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGL 462 (471)
Q Consensus 430 pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l 462 (471)
+|..|. ++++|+++.. +++++++++++|++++
T Consensus 404 ~~~~~~-~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 404 VPREYG-ENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp CCTTSC-SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred cccccC-CCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 777554 7899999994 8899999999998764
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.8e-27 Score=241.82 Aligned_cols=336 Identities=13% Similarity=0.065 Sum_probs=243.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEE---EeCChHHHHHHHHHHhcCC------
Q 012095 108 DTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQIL---VSNGAKQSILQAVLAVCSP------ 178 (471)
Q Consensus 108 ~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~---it~G~~~al~~~~~~l~~~------ 178 (471)
.+++.+.+++.+++.....+|...++..++++.+.+++.+.+|.+.++++++ +|+|+++++..++.++..+
T Consensus 67 ~~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~ 146 (502)
T 3hbx_A 67 WMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRK 146 (502)
T ss_dssp CCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHH
Confidence 3467888888888766555565566678999999999999999765455554 4899999999888887655
Q ss_pred --CC-----eEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHH
Q 012095 179 --GD-----EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 251 (471)
Q Consensus 179 --gd-----~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~ 251 (471)
|| +|++++++|.++...++..|++++.||++. +++.+|+++|++++++++++|++++|+||||.+.+ ++
T Consensus 147 ~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~---l~ 222 (502)
T 3hbx_A 147 AEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSE-GYYVMDPQQAVDMVDENTICVAAILGSTLNGEFED---VK 222 (502)
T ss_dssp HTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCBT-TBCSCCHHHHHHHCCTTEEEEEEEBSCTTTCCBCC---HH
T ss_pred hcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecCC-CcCcCCHHHHHHHHhhCCEEEEEecCCCCCCcccC---HH
Confidence 76 899999999999999999999999999864 44789999999999999999999999999999999 88
Q ss_pred HHHHHHHhCC-----CeEEEEccCCCcccc---CCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcC-HHHHH
Q 012095 252 EIARIVAKHP-----RLLVLSDEIYEHIIY---APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVA 322 (471)
Q Consensus 252 ~i~~l~~~~~-----~~~ii~De~y~~~~~---~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~-~~~i~ 322 (471)
+|.++|++++ ++++++|++|..+.. .+..... +. ..+-.++..|.+|.++ .+.++||++.. ++.+.
T Consensus 223 ~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~---~~-~~~~D~v~~s~hK~l~-~p~g~G~~~~~~~~~l~ 297 (502)
T 3hbx_A 223 LLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWD---FR-LPLVKSINVSGHKYGL-VYAGIGWVIWRNKEDLP 297 (502)
T ss_dssp HHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCS---TT-STTEEEEEEETTTTTC-CCSSCEEEEESSGGGSC
T ss_pred HHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccc---cC-CCCceEEEECcccccC-CCCCeEEEEEeCHHHhh
Confidence 8888888752 799999999986541 2211111 11 1244567778899874 77889988764 44432
Q ss_pred HHHHHHhcc----------cCCC---ChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC-Cc
Q 012095 323 ACNKIQSQF----------TSGA---SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QG 388 (471)
Q Consensus 323 ~l~~~~~~~----------~~~~---~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p-~~ 388 (471)
........+ ..+. ..+.+.++...+. .+.+.+..++..++++++.+.|.+++++++..+ ..
T Consensus 298 ~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg-----~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~ 372 (502)
T 3hbx_A 298 EELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG-----HEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEG 372 (502)
T ss_dssp GGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSS
T ss_pred HHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 211110011 0111 2333444444443 345677888888899999999999977988765 33
Q ss_pred ceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC---CCCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 012095 389 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG---DDTCIRISYAA--SLTTLQAAVERIKKGLL 463 (471)
Q Consensus 389 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~---~~~~iRis~~~--~~e~i~~~~~~l~~~l~ 463 (471)
..++++++++..+ .+..++.+.|.++ ||.+....... ...++|+++.. +.++++.+++.|+++++
T Consensus 373 ~~~v~f~~~~~~~---------~~~~~l~~~L~~~-Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l~ 442 (502)
T 3hbx_A 373 VPLVAFSLKDSSC---------HTEFEISDMLRRY-GWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMR 442 (502)
T ss_dssp SSEEEEEESSCSS---------CCHHHHHHHHHTT-TCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEecCCCc---------CCHHHHHHHHHhC-CcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 3346667764210 2566899988765 88764332221 23589999986 88999999999999988
Q ss_pred hhCC
Q 012095 464 TLRP 467 (471)
Q Consensus 464 ~~~~ 467 (471)
+++.
T Consensus 443 ~l~~ 446 (502)
T 3hbx_A 443 ELDE 446 (502)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7644
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=230.81 Aligned_cols=319 Identities=11% Similarity=0.114 Sum_probs=228.6
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHcCCCC-CCCCCCCHHHHHHH-HHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh-c
Q 012095 100 LAAGEPDFDTPVLIAEAGINAIREGFTR-YTPNAGTLELRSAI-CHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-C 176 (471)
Q Consensus 100 l~~g~~~~~~p~~v~~a~~~~~~~~~~~-Y~~~~G~~~lr~~i-a~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l-~ 176 (471)
+..|.|++++++.+.+++.+++..+... |+ ....+|++++ ++++ | ..+++++++|+++++..++.++ +
T Consensus 5 i~~~~p~~~~~~~i~~a~~~~~~~~~~~~~~--~~~~~l~~~~~a~~~----g---~~~~~v~~~sgt~al~~al~~l~~ 75 (377)
T 3ju7_A 5 IPFLRASTVPVIEYLDELKEIDASHIYTNYG--PINQRFEQTIMSGFF----Q---NRGAVTTVANATLGLMAAIQLKKR 75 (377)
T ss_dssp BCSCCCCCCCGGGGHHHHHHHHHHTCCSSSC--HHHHHHHHHHHHHTS----T---TCSEEEEESCHHHHHHHHHHHHSC
T ss_pred eeccCCCCCCcHHHHHHHHHHHHcCCcccCC--HHHHHHHHHHHHHHh----C---CCCeEEEeCCHHHHHHHHHHHcCC
Confidence 5667999999999999999998876533 33 3567889988 8875 3 2568999999999999999998 8
Q ss_pred CCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhh-ccC--CcEEEEcCCCCCcccCCCHHHHHHH
Q 012095 177 SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL-TEK--SRLLILCSPSNPTGSVYPKNLLDEI 253 (471)
Q Consensus 177 ~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l-~~~--~~~i~i~~p~NPtG~~~~~~~l~~i 253 (471)
+|||+|+++.|+|.++...++..|++++.+++++ ++|.+|++++++++ +++ +|+|+ |+||||...+ +++|
T Consensus 76 ~~Gd~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~---~~~i 148 (377)
T 3ju7_A 76 KKGKYALMPSFTFPATPLAAIWCGLEPYFIDISI-DDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMN---LEEY 148 (377)
T ss_dssp TTCCEEEEESSSCTHHHHHHHHTTCEEEEECBCT-TTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCC---CHHH
T ss_pred CCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCC-ccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccC---HHHH
Confidence 9999999999999999999999999999999874 46889999999988 666 88777 7789999998 7888
Q ss_pred HHHHHhCCCeEEEEccCCCcccc-CCCCccccccCCCCCCceEEEecC--CcccCccchhheeeEc-CHHHHHHHHHHHh
Q 012095 254 ARIVAKHPRLLVLSDEIYEHIIY-APATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAG-PKHFVAACNKIQS 329 (471)
Q Consensus 254 ~~l~~~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~~~~~~i~~~S~--SK~~g~~G~R~G~v~~-~~~~i~~l~~~~~ 329 (471)
.++|+ | +++||+|++|..... .+. .+.+. ...+.+.|| +|.++ +| +.|++++ +++++++++.++.
T Consensus 149 ~~la~-~-~~~vi~D~a~a~g~~~~~~------~~g~~-~~d~~~~S~~~~K~l~-~g-~gG~~~~~~~~l~~~~~~~~~ 217 (377)
T 3ju7_A 149 EELEK-K-GVPVVVDAAPGFGLMNGGM------HYGQD-FSGMIIYSFHATKPFG-IG-EGGLIYSKNEEDIQRIKRMGN 217 (377)
T ss_dssp HHHHH-T-TCCBEEECTTCTTCEETTE------ETTTT-CSSEEEEECBTTSSSC-CB-SCEEEEESCHHHHHHHHHHTB
T ss_pred HHHHh-c-CCEEEEECCCccCCeECCE------eccCC-CCcEEEEECCCCCcCC-CC-CcEEEEECCHHHHHHHHHHHh
Confidence 99999 9 999999999986432 111 11000 012556665 59987 45 6788776 5778888877654
Q ss_pred c------------ccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCC--eeeCCCc--ce--E
Q 012095 330 Q------------FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV--KMSEPQG--AF--Y 391 (471)
Q Consensus 330 ~------------~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~--~~~~p~~--g~--~ 391 (471)
. +++..+.+.+.++...|+. ++...++.+++++++.+.|.+++++ .+..+.+ .+ |
T Consensus 218 ~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~-------l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 290 (377)
T 3ju7_A 218 FGFDTNRECTMMGFNCKMSEYAAAIGIATMKK-------WDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQF 290 (377)
T ss_dssp TTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSS
T ss_pred cCCCCCCceeeccccCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEE
Confidence 2 2445666665555555543 4455556666677777777776543 2222221 12 2
Q ss_pred EeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC--C------CC-------------CCcEEEEeec--CH
Q 012095 392 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA--F------GD-------------DTCIRISYAA--SL 448 (471)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~--f------~~-------------~~~iRis~~~--~~ 448 (471)
+.+.+++. .+.+++.+.|.++ ||.+..+.. . .. .+.+||.+.. ++
T Consensus 291 ~~~~~~~~-----------~~~~~l~~~L~~~-gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~ 358 (377)
T 3ju7_A 291 MPILCPEE-----------VRNKQVIEDLKKQ-KIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTK 358 (377)
T ss_dssp EEEECCTT-----------SCHHHHHHHHHTT-TBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCH
T ss_pred EEEEeCCh-----------hhHHHHHHHHHHC-CCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCH
Confidence 33445432 1467888887665 999887652 1 00 1369999986 89
Q ss_pred HHHHHHHHHHHHHHHh
Q 012095 449 TTLQAAVERIKKGLLT 464 (471)
Q Consensus 449 e~i~~~~~~l~~~l~~ 464 (471)
++++++++.|++++..
T Consensus 359 ~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 359 EIVEQIVICLGQKVVS 374 (377)
T ss_dssp HHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999887754
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-26 Score=237.23 Aligned_cols=342 Identities=13% Similarity=0.104 Sum_probs=241.5
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcC------------
Q 012095 110 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS------------ 177 (471)
Q Consensus 110 p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~------------ 177 (471)
+..+.+.+..++..+...|...++..++++.+++++.+.+|.+...+++++|+|+++++..++.++.+
T Consensus 109 ~~~~~e~l~~~~~~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~ 188 (511)
T 3vp6_A 109 IGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMA 188 (511)
T ss_dssp HHHHHHHHHHHHCCCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGG
T ss_pred HHHHHHHHHHHhccCCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcc
Confidence 44566777778777778898888999999999999999999876568999999999999988877654
Q ss_pred --CCCeEEEcCCCCCChHHHHHHcCC---EEEEecCCCCCCCcCCHHHHHhhhccC------CcEEEEcCCCCCcccCCC
Q 012095 178 --PGDEVIIPAPFWVSYPEMARIADA---TPVILPTRISENFLLDPKVLESKLTEK------SRLLILCSPSNPTGSVYP 246 (471)
Q Consensus 178 --~gd~Vlv~~p~y~~~~~~~~~~G~---~~~~v~~~~~~~~~ld~e~l~~~l~~~------~~~i~i~~p~NPtG~~~~ 246 (471)
+++.|++++++|.++...++.+|. +++.++++ .++.+|+++|+++++++ +++|++++|+||||.+-+
T Consensus 189 ~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d--~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~ 266 (511)
T 3vp6_A 189 AVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP 266 (511)
T ss_dssp GSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC
T ss_pred cCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeecC--CCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc
Confidence 577899999999999999999998 89999986 35789999999999764 788999999999999987
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCH-HHHHHHH
Q 012095 247 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAACN 325 (471)
Q Consensus 247 ~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~-~~i~~l~ 325 (471)
+++|+++|++| ++++++|++|+........... .+.+...-.+++.+++|.++.+ ..+|+++.++ ++++...
T Consensus 267 ---l~~I~~ia~~~-~~~lhvD~a~~~~~~~~~~~~~--~~~g~~~aDsv~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~ 339 (511)
T 3vp6_A 267 ---IQEIADICEKY-NLWLHVDAAWGGGLLMSRKHRH--KLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCN 339 (511)
T ss_dssp ---HHHHHHHHHHH-TCEEEEEETTGGGGGGCTTTGG--GGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHH
T ss_pred ---HHHHHHHHHHc-CCEEEEEccchhhHhhChhhhh--hccCCccCCEEEECcccccCCC-cCeEEEEEeCHHHHHHHh
Confidence 99999999999 9999999999875542211111 1111122346778999999744 6678887654 4555432
Q ss_pred HHHhccc-----------------C----CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeee
Q 012095 326 KIQSQFT-----------------S----GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (471)
Q Consensus 326 ~~~~~~~-----------------~----~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~ 384 (471)
.....+. . ....+...++..++. .++++++.++..++.+++.+.|+++||+++.
T Consensus 340 ~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g-----~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~ 414 (511)
T 3vp6_A 340 QMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG-----TVGFENQINKCLELAEYLYAKIKNREEFEMV 414 (511)
T ss_dssp CCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHSCTTEEES
T ss_pred ccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 1111000 0 012333444444442 5788999999999999999999999999886
Q ss_pred C---CCcceEEeEecCCccCCcccCC----CCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec---CHHHHHHH
Q 012095 385 E---PQGAFYLFIDFSTYYGSEAEGF----GKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAA 454 (471)
Q Consensus 385 ~---p~~g~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~---~~e~i~~~ 454 (471)
. |..+.+.|.-.|.......... .......++.+.|++++.+.+......+..+++|++++. +.++|+.+
T Consensus 415 ~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~l 494 (511)
T 3vp6_A 415 FNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFL 494 (511)
T ss_dssp SSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHH
T ss_pred ecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHH
Confidence 5 6666654433333210000000 000013468888888843444321111223579999953 88999999
Q ss_pred HHHHHHHHHhh
Q 012095 455 VERIKKGLLTL 465 (471)
Q Consensus 455 ~~~l~~~l~~~ 465 (471)
++.|++..+++
T Consensus 495 l~~i~~~~~~~ 505 (511)
T 3vp6_A 495 IEEIERLGQDL 505 (511)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHhh
Confidence 99998876543
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-26 Score=232.10 Aligned_cols=284 Identities=16% Similarity=0.138 Sum_probs=198.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH----HHHHcCCEEEE
Q 012095 130 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVI 205 (471)
Q Consensus 130 ~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~G~~~~~ 205 (471)
+.+...+|++.+++++ |. +..++++++++++..++++++++||+|++++|+|.++.. .++..|++++.
T Consensus 80 ~~p~~~~le~~lA~l~----g~----~~~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~ 151 (430)
T 3ri6_A 80 SNPTVEDLEQRLKNLT----GA----LGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRF 151 (430)
T ss_dssp CCHHHHHHHHHHHHHH----TC----SEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHHHHH----CC----CcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEE
Confidence 3445566777776664 42 345666666799999999999999999999999998887 66789999999
Q ss_pred ecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccc
Q 012095 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 285 (471)
Q Consensus 206 v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~ 285 (471)
++.+ |++++++++++++++|++++|+||||.+++ +++|+++|+++ +++||+|++|....+. ...
T Consensus 152 v~~~-------d~~~l~~ai~~~t~~v~~e~p~NptG~~~d---l~~i~~la~~~-g~~livD~a~~~~~~~-----~~~ 215 (430)
T 3ri6_A 152 VDVM-------DSLAVEHACDETTKLLFLETISNPQLQVAD---LEALSKVVHAK-GIPLVVDTTMTPPYLL-----EAK 215 (430)
T ss_dssp ECTT-------CHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHTT-TCCEEEECTTSCTTTC-----CGG
T ss_pred eCCC-------CHHHHHHhhCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCcccccC-----ChH
Confidence 9863 899999999999999999999999999999 88999999999 9999999999853321 111
Q ss_pred cCCCCCCceEEEecCCcccCccchhheeeEc---CHHH------------------HHHHHH-HHhcccCCCChHHHHHH
Q 012095 286 SLPGMWERTLTVNGFSKAFAMTGWRLGYIAG---PKHF------------------VAACNK-IQSQFTSGASSISQKAG 343 (471)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~---~~~~------------------i~~l~~-~~~~~~~~~~~~~q~aa 343 (471)
. .+..+++.|+||.++-+|..+|.+++ +..+ ++.+.. ........++++....+
T Consensus 216 ~----~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~~a~l~ 291 (430)
T 3ri6_A 216 R----LGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPHNAYLQ 291 (430)
T ss_dssp G----GTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHH
T ss_pred H----cCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 1 24459999999999756655554443 3212 233221 22233444555543333
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCe-eeCCC----------------cceEEeEecCCccCCcccC
Q 012095 344 VAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQ----------------GAFYLFIDFSTYYGSEAEG 406 (471)
Q Consensus 344 ~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~-~~~p~----------------~g~~~~~~~~~~~~~~~~~ 406 (471)
... .+.+....++..+++..+.+.|++.|+++ +..|. ||+.+|+.++..
T Consensus 292 l~~-------l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~------- 357 (430)
T 3ri6_A 292 SLG-------LETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESK------- 357 (430)
T ss_dssp HHH-------HHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSH-------
T ss_pred Hhh-------hhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCH-------
Confidence 332 34455666777888889999999988876 34444 674688888732
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEECCCCCC-----------------------CCCcEEEEeecCHHHHHHHHHHHHHHH
Q 012095 407 FGKIENSESLCRYLLDKAQVALVPGDAFG-----------------------DDTCIRISYAASLTTLQAAVERIKKGL 462 (471)
Q Consensus 407 ~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~-----------------------~~~~iRis~~~~~e~i~~~~~~l~~~l 462 (471)
.+...|.+.|. -.++.+.+|..+. .+++||||++. |+.++.++.|++++
T Consensus 358 ----~~~~~~~~~l~-~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~--E~~~dl~~dl~~al 429 (430)
T 3ri6_A 358 ----EASYRFMDALK-LIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGI--EEIEDLKEDILQAL 429 (430)
T ss_dssp ----HHHHHHHHHCS-SSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHhCC-cceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHhh
Confidence 14556666543 3467777777654 14689999987 23344445555544
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-26 Score=230.52 Aligned_cols=213 Identities=12% Similarity=0.131 Sum_probs=164.2
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEecCC
Q 012095 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTR 209 (471)
Q Consensus 134 ~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~G~~~~~v~~~ 209 (471)
..++++.+++++ | .+++++++|+++++..++.+++++||+|+++++.|.+....+ +..|++++.++.+
T Consensus 84 ~~~le~~lA~l~----g----~~~~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~ 155 (415)
T 2fq6_A 84 HFSLQQAMCELE----G----GAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL 155 (415)
T ss_dssp HHHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT
T ss_pred HHHHHHHHHHHh----C----CCeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCC
Confidence 455666666664 4 246777889999999999999999999999999998877554 4579999998752
Q ss_pred CCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHh--CCCeEEEEccCCCccccCCCCccccccC
Q 012095 210 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK--HPRLLVLSDEIYEHIIYAPATHTSFASL 287 (471)
Q Consensus 210 ~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~--~~~~~ii~De~y~~~~~~~~~~~~~~~~ 287 (471)
|++++++++++++++|++++|+||||.+++ +++|+++|++ | ++++|+|++|....+. .++ .
T Consensus 156 -------d~~~le~ai~~~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~-g~~livD~a~a~~~~~----~p~-~- 218 (415)
T 2fq6_A 156 -------IGADIVKHLQPNTKIVFLESPGSITMEVHD---VPAIVAAVRSVVP-DAIIMIDNTWAAGVLF----KAL-D- 218 (415)
T ss_dssp -------CGGGGGGGCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCT-TCEEEEECTTTTTTSS----CGG-G-
T ss_pred -------CHHHHHHhhccCCcEEEEECCCCCCCEeec---HHHHHHHHHhhcC-CCEEEEECCCcccccC----Ccc-c-
Confidence 889999999999999999999999999999 8999999999 9 9999999999864221 111 1
Q ss_pred CCCCCceEEEecCCcccCccchh-heeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 012095 288 PGMWERTLTVNGFSKAFAMTGWR-LGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366 (471)
Q Consensus 288 ~~~~~~~i~~~S~SK~~g~~G~R-~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~ 366 (471)
.+..+++.|++|.+|.+|.+ +||+++++++++.+...........+++...++...++ ++....++..+
T Consensus 219 ---~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G~~~~~~~a~~~~~~l~-------~l~~r~~~~~~ 288 (415)
T 2fq6_A 219 ---FGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLR-------TLGVRLRQHHE 288 (415)
T ss_dssp ---GTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred ---cCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhh-------HHHHHHHHHHH
Confidence 24569999999999977765 59999998888888776654454556655444433333 34555566677
Q ss_pred HHHHHHHHhcCCCCC
Q 012095 367 RRDFLVKSFGELEGV 381 (471)
Q Consensus 367 ~r~~l~~~L~~~~g~ 381 (471)
++..+.+.|.+.|++
T Consensus 289 n~~~l~~~L~~~~~v 303 (415)
T 2fq6_A 289 SSLKVAEWLAEHPQV 303 (415)
T ss_dssp HHHHHHHHHHTCTTE
T ss_pred HHHHHHHHHHcCCCe
Confidence 777788888776554
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-27 Score=240.42 Aligned_cols=290 Identities=14% Similarity=0.106 Sum_probs=200.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEec
Q 012095 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILP 207 (471)
Q Consensus 128 Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~ 207 (471)
|.+.....++++.+++ + |. + +++++|+|+++++..++++++++||+|++++|+|.++...+...|++++.++
T Consensus 53 ~~~~~~~~~~~~~la~-~----g~--~-~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~ 124 (446)
T 2x3l_A 53 HHPEEVILKSMKQVEK-H----SD--Y-DGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDISQQEGHFIE 124 (446)
T ss_dssp TSCSSHHHHHHHHHCS-C----TT--E-EEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHHHTCCEEECE
T ss_pred cCcchHHHHHHHHHHh-c----CC--C-ceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHcCCeEEEEe
Confidence 3344445566666655 4 42 2 6899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC----CcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCc-cccCCCCcc
Q 012095 208 TRISEN----FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHT 282 (471)
Q Consensus 208 ~~~~~~----~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~-~~~~~~~~~ 282 (471)
...+++ +.+|++++ ++++++++++++ +|+||.+++ +++|+++|++| +++||+||+|.. +.|.+. ..
T Consensus 125 ~~~~~~~~~~~~~d~~~l---~~~~~~~v~~~~-~n~~G~~~~---l~~I~~l~~~~-~~~livDea~~~~~~f~~~-~~ 195 (446)
T 2x3l_A 125 THQSPLTNHYNKVNLSRL---NNDGHKLVVLTY-PNYYGETFN---VEEVIKSLHQL-NIPVLIDEAHGAHFGLQGF-PD 195 (446)
T ss_dssp EEECTTTSSEEEEEC----------CCEEEEES-SCTTSCCCC---HHHHHHHHHHT-TCCEEEECTTCTTTTSTTS-CC
T ss_pred CeeccccCcCCCCCHHHH---cCCCceEEEEEC-CCCCeEecC---HHHHHHHHHhc-CCeEEEcchhhhhhccCCC-CC
Confidence 832333 56788888 456899999988 556999999 88999999999 999999999986 435443 22
Q ss_pred ccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHH--HHHHHHhcc-cCCCChHHHHHHHHHHhccCCChHH-HH
Q 012095 283 SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA--ACNKIQSQF-TSGASSISQKAGVAALGLGYAGGEV-VS 358 (471)
Q Consensus 283 ~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~--~l~~~~~~~-~~~~~~~~q~aa~~~L~~~~~~~~~-~~ 358 (471)
+..... ..+++.|+||.++ ++.++||+++++++++ .+......+ ..+++.....++.++++. ...+ .+
T Consensus 196 ~~~~~g----~Di~~~S~~K~l~-~~~g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~---l~~~g~~ 267 (446)
T 2x3l_A 196 STLNYQ----ADYVVQSFHKTLP-ALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQF---YKTYDST 267 (446)
T ss_dssp CGGGGT----CSEEEECHHHHSS-SCTTCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH---HHHCCCH
T ss_pred ChHHcC----CCEEEECCccccc-cccccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHH---HHHhCHH
Confidence 332222 2389999999664 4445899999887654 333222222 233444333333333321 0111 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEE-CCCCCCCC
Q 012095 359 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV-PGDAFGDD 437 (471)
Q Consensus 359 ~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~-pg~~f~~~ 437 (471)
++.++.++.++.+.+. |+++..+.++.++|+.++.. +..++.+.|.++ ||.+. +|.
T Consensus 268 ~~~~~~~~l~~~l~~~-----g~~~~~~~~~~~l~i~~~~~------------~~~~l~~~L~~~-GI~v~~~g~----- 324 (446)
T 2x3l_A 268 LFFAKRAQLIECLENK-----GFEMLQVDDPLKLLIKYEGF------------TGHDIQNWFMNA-HIYLELADD----- 324 (446)
T ss_dssp HHHHHHHHHHHHHHHH-----TCEEEECSSTTEEEEECTTS------------CHHHHHHHHHHT-TEEESEECS-----
T ss_pred HHHHHHHHHHHHHHHc-----CCEECcCCCCeEEEEEeCCc------------CHHHHHHHHHHC-CCEEEecCC-----
Confidence 2444455555555554 67776666566789888632 678899988877 99987 543
Q ss_pred CcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012095 438 TCIRISYAA--SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 438 ~~iRis~~~--~~e~i~~~~~~l~~~l~~~~ 466 (471)
+++|++++. +++++ +++++|+++++++.
T Consensus 325 ~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~~ 354 (446)
T 2x3l_A 325 YQALAILPLWHHDDTY-LFDSLLRKIEDMIL 354 (446)
T ss_dssp SCEEEECCCCCTTCCC-CHHHHHHHHHTCCC
T ss_pred CEEEEEeecCCCHHHH-HHHHHHHHHHHhhc
Confidence 689999986 77889 99999999987653
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-27 Score=242.52 Aligned_cols=339 Identities=13% Similarity=0.048 Sum_probs=231.6
Q ss_pred cCCCeEEcCCCCCC--CCC-hHHHHHHHHHHHHcC----CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChH
Q 012095 93 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREG----FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165 (471)
Q Consensus 93 ~g~~~i~l~~g~~~--~~~-p~~v~~a~~~~~~~~----~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~ 165 (471)
.|+.+||+..|... ++. ++.+.+|+.+++... ...|+. ....++++.+++++.+..+ ...++|++++|++
T Consensus 61 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~--~~~~~v~f~~sGs 137 (472)
T 1ohv_A 61 DGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAP--KGMSQLITMACGS 137 (472)
T ss_dssp TSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCC--TTCCEEEEESSHH
T ss_pred CCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCC--CCcCEEEEeCCch
Confidence 58889999988753 443 788999998865321 123432 3457899999998776554 2567999999999
Q ss_pred HHHHHHHHHhc--------C-----------------CC---CeEEEcCCCCCChHHHHH-HcCCEE-----------EE
Q 012095 166 QSILQAVLAVC--------S-----------------PG---DEVIIPAPFWVSYPEMAR-IADATP-----------VI 205 (471)
Q Consensus 166 ~al~~~~~~l~--------~-----------------~g---d~Vlv~~p~y~~~~~~~~-~~G~~~-----------~~ 205 (471)
+++..+++.+. . || +.|++.+++|+++...+. ..|... ..
T Consensus 138 eA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~ 217 (472)
T 1ohv_A 138 CSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPI 217 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCE
T ss_pred hHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcc
Confidence 99999998773 1 46 899999999998776543 333211 11
Q ss_pred ecCCCC-----CC--C-----cCCHHHHHhhhcc------CCcEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCeEEE
Q 012095 206 LPTRIS-----EN--F-----LLDPKVLESKLTE------KSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVL 266 (471)
Q Consensus 206 v~~~~~-----~~--~-----~ld~e~l~~~l~~------~~~~i~i~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii 266 (471)
+++... .. + ..|+++|++++++ ++++|+++..+|+||. ..+++++++|.++|++| |+++|
T Consensus 218 ~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~-g~lli 296 (472)
T 1ohv_A 218 APFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKH-GCAFL 296 (472)
T ss_dssp ECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHT-TCEEE
T ss_pred cCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHh-CCEEE
Confidence 122100 00 1 1268899998876 7788877777888996 57899999999999999 99999
Q ss_pred EccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHH
Q 012095 267 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAA 346 (471)
Q Consensus 267 ~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~ 346 (471)
+||+|.++.+.|. ...+..... ...+.+.||||.+ ++| ||++ ++++. .+.......+++.+++++.++.++
T Consensus 297 ~DEv~~g~g~~g~-~~~~~~~gv--~~~~Di~t~sK~~-l~G---G~~~-~~~~~-~~~~~~~~~T~~~~~~~~aaa~aa 367 (472)
T 1ohv_A 297 VDEVQTGGGSTGK-FWAHEHWGL--DDPADVMTFSKKM-MTG---GFFH-KEEFR-PNAPYRIFNTWLGDPSKNLLLAEV 367 (472)
T ss_dssp EECTTTTTTTTSS-SSGGGGGCC--SSCCSEEEECGGG-SSE---EEEE-CGGGS-CSSSSSSCCSSSSCHHHHHHHHHH
T ss_pred EeCcccCCCCCCC-chhccccCC--CCCCCEEEEcccc-ccC---CccC-chhhc-ccccccccCccCccHHHHHHHHHH
Confidence 9999987654432 112211110 0012255899995 456 8877 66653 122222344567899999999988
Q ss_pred HhccCCChHHHHHHHHHHHHHHHHHHHHhcCC----CC-CeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHH
Q 012095 347 LGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL 421 (471)
Q Consensus 347 L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~----~g-~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll 421 (471)
|+. ..+ +.+.++++++++++.+.|+++ ++ +....+.|.| ++++++.. .+...+++.|+
T Consensus 368 l~~---~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~~-~~~~~~~~-----------~~~~~~~~~l~ 430 (472)
T 1ohv_A 368 INI---IKR--EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTF-CSFDTPDE-----------SIRNKLISIAR 430 (472)
T ss_dssp HHH---HHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTE-EEEECSSH-----------HHHHHHHHHHH
T ss_pred HHH---HHh--CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCceE-EEEEeCCh-----------hHHHHHHHHHH
Confidence 874 111 245667777777777777654 43 4444556555 55677532 13568899998
Q ss_pred HcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012095 422 DKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 422 ~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~~ 466 (471)
++ ||.+.|+. .++||++++. ++++|++++++|++++++++
T Consensus 431 ~~-Gv~~~~~g----~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~~ 472 (472)
T 1ohv_A 431 NK-GVMLGGCG----DKSIRFRPTLVFRDHHAHLFLNIFSDILADFK 472 (472)
T ss_dssp HT-TEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHHHHTC-
T ss_pred HC-CeEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 75 99999853 5799997764 89999999999999987653
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-26 Score=228.32 Aligned_cols=299 Identities=12% Similarity=0.130 Sum_probs=220.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChH--HHHHHcC--CEEEEecCCC
Q 012095 135 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP--EMARIAD--ATPVILPTRI 210 (471)
Q Consensus 135 ~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~--~~~~~~G--~~~~~v~~~~ 210 (471)
.++.+.+++.+.+.+|.+ +.+++|+|+++++..++.. +.+||+|++.++.|.++. ..++..| .+++.++.+.
T Consensus 34 ~~~~~~~~~~l~~~~~~~---~~v~~~~sgt~a~~~~~~~-~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 109 (379)
T 3ke3_A 34 QEVMNDLLSNLKTVYNAE---AAVIIPGSGTYGMEAVARQ-LTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAER 109 (379)
T ss_dssp HHHHHHHHHHHHHHHTCS---EEEEEESCHHHHHHHHHHH-HCTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEECEE
T ss_pred HHHHHHHHHHHHHHhCCC---CEEEEcCChhHHHHHHHHh-CCCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEEeccc
Confidence 467777777777777743 6889999999999988755 579999999999887654 3455566 4788887653
Q ss_pred CC------C-CcCCHHHHHhhhc-cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCcc
Q 012095 211 SE------N-FLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT 282 (471)
Q Consensus 211 ~~------~-~~ld~e~l~~~l~-~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~ 282 (471)
.+ . ..+|+++++++++ +++++|++++++||||.+++.+++++|.++|++| ++++|+|+++. . + ...
T Consensus 110 ~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~-~~~li~D~~~~-g---~-~~~ 183 (379)
T 3ke3_A 110 TEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSV-GGLLVIDCIAS-G---C-VWL 183 (379)
T ss_dssp SSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHT-TCEEEEECTTC-T---T-CCC
T ss_pred cccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHc-CCEEEEEeccc-C---C-ccc
Confidence 11 1 1479999999995 5899999999999999999999999999999999 99999999975 2 1 111
Q ss_pred ccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHH----------------------hcccCCCChHHH
Q 012095 283 SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ----------------------SQFTSGASSISQ 340 (471)
Q Consensus 283 ~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~----------------------~~~~~~~~~~~q 340 (471)
.+.. .+..+++.|++|.++ .+..+|++++++++++.+.... ..+..+++...+
T Consensus 184 ~~~~----~~~d~~~~s~~K~l~-~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~ 258 (379)
T 3ke3_A 184 DMKE----LGIDVLISAPQKGWS-STPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSL 258 (379)
T ss_dssp CHHH----HTCSEEEECTTTTTC-SCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHH
T ss_pred cccc----cCCCEEEecchhhcC-CCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHH
Confidence 1111 234588999999986 4446899999999988775311 011236777777
Q ss_pred HHHHHHHhccCCChH-HHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC---cceEEeEecCCccCCcccCCCCCCCHHHH
Q 012095 341 KAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ---GAFYLFIDFSTYYGSEAEGFGKIENSESL 416 (471)
Q Consensus 341 ~aa~~~L~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~l 416 (471)
.++.++|+. ..+ .++++.++++++++++.+.|+++ |+++..+. .+....+..+. ....+
T Consensus 259 ~a~~aal~~---~~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~~~~i~~~~~~~-------------~~~~~ 321 (379)
T 3ke3_A 259 RQFRDAILE---AKEIGFDILRDAQWELGNRVRKVLTDK-GIESVAAEGFEAPGVVVSYTER-------------DDMHK 321 (379)
T ss_dssp HHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSBCTTCBCSSEEEEECSC-------------HHHHS
T ss_pred HHHHHHHHH---HHHhcHHHHHHHHHHHHHHHHHHHHHc-CCEecCCccccCceEEEEccCC-------------cchHH
Confidence 777788764 233 26788889999999999999988 88776543 23323333321 12223
Q ss_pred HHHHHHcCCEEEECCCCCCC-----CCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012095 417 CRYLLDKAQVALVPGDAFGD-----DTCIRISYAA--SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 417 ~~~Ll~~~gV~v~pg~~f~~-----~~~iRis~~~--~~e~i~~~~~~l~~~l~~~~ 466 (471)
.+.|.+ +||.+.+|..+.. .+++|+++.. ++++|++++++|+++++++.
T Consensus 322 ~~~L~~-~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 322 GSAFAE-AGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp SHHHHH-TTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-CCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence 455554 5999999986542 5799999985 88999999999999998764
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-29 Score=256.22 Aligned_cols=340 Identities=14% Similarity=0.092 Sum_probs=231.8
Q ss_pred hcCCCeEEcCCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~~~--~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+.+||+..|... ++. ++.+.+++.+++.++.....+.....+|.+.|++++ + ..+.+++++++++++
T Consensus 97 ~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~~~~~~~~~~~~Lae~L~~~~----p---~~~~v~~~nSGseA~ 169 (465)
T 2yky_A 97 VDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLNLSTQTENEALFAEAVCDRF----P---SIDLVRFTNSGTEAN 169 (465)
Confidence 468899999998853 433 788999999888764322224444556666666654 2 347899999999999
Q ss_pred HHHHHHhc--CCCCeEEEcCCCCCChHHHHH----HcCC--EEEEecCCCCCCCcCCHHHHHhhhc---cCCcEEEEcCC
Q 012095 169 LQAVLAVC--SPGDEVIIPAPFWVSYPEMAR----IADA--TPVILPTRISENFLLDPKVLESKLT---EKSRLLILCSP 237 (471)
Q Consensus 169 ~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~----~~G~--~~~~v~~~~~~~~~ld~e~l~~~l~---~~~~~i~i~~p 237 (471)
..+++.+. ..+|.|++.+++|.++...+. ..|. .++.+|. .|++.|+++++ +++++|+++..
T Consensus 170 ~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-------~d~~~l~~~l~~~~~~~aavi~epv 242 (465)
T 2yky_A 170 LMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-------NDVEGTADLLKRHGHDCAAILVEPM 242 (465)
Confidence 99988752 345899999999988765433 1233 2233332 28899999887 57788777655
Q ss_pred CCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEc
Q 012095 238 SNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 316 (471)
Q Consensus 238 ~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~ 316 (471)
+|+||. ..+++.+++|.++|++| ++++|+||+|. +.++. ...+.. .+....+.||||.+| .|+|+||+++
T Consensus 243 ~~~~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~~-~r~g~--~~a~~~----~gv~pDi~t~sK~lg-~G~piG~v~~ 313 (465)
T 2yky_A 243 LGAGGCVPAERAFLDLLRAEASRC-GALLIFDEVMT-SRLSG--GGAQEM----LGISADLTTLGKYIG-GGMSFGAFGG 313 (465)
Confidence 666995 45688999999999999 99999999999 64321 111111 122234568999999 5999999999
Q ss_pred CHHHHHHHHH-----HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCC---CCeeeCCCc
Q 012095 317 PKHFVAACNK-----IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE---GVKMSEPQG 388 (471)
Q Consensus 317 ~~~~i~~l~~-----~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~---g~~~~~p~~ 388 (471)
++++++.+.. .....+++.++++|.++.++|+.- ++ +.+.++++++.+++.+.|+++. ++....+..
T Consensus 314 ~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l---~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~ 388 (465)
T 2yky_A 314 RRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQI---YT--RQAASDLSASGDRFRANLNRIAVENQAPLQFTGL 388 (465)
Confidence 9999998876 234466788999999999888742 11 2355666666666666666541 332223445
Q ss_pred ceEEeEecCC-ccCC-cccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012095 389 AFYLFIDFST-YYGS-EAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 389 g~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~~~~ 466 (471)
|.++|+.+++ .+.. .............+++.|+++ ||++.|+. |.. +++..++++|++++++|++++++++
T Consensus 389 G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~-GV~v~p~~-~~~-----~s~~~t~edid~~l~~l~~~l~~~~ 461 (465)
T 2yky_A 389 GSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRK-GIYLAPRG-MYA-----LSLEIADAGRDAFAEALADFIGEQR 461 (465)
Confidence 6567777753 1000 000000001245788888875 99999976 332 7777799999999999999988764
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-26 Score=236.19 Aligned_cols=297 Identities=13% Similarity=0.123 Sum_probs=215.2
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChH-HHHHHHHHHhcC--CCCeEEEcCCCCCChHHHHHHcCCEEEEecCCC
Q 012095 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAK-QSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPVILPTRI 210 (471)
Q Consensus 134 ~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~-~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~ 210 (471)
..++.+.+.+++.+.+|.+ ++ +++|+|++ .++..++.++.. +|+.|+++++.|+++...++..|++++.+++.+
T Consensus 131 ~~~~~~~~~~~la~~~g~~--~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~ 207 (456)
T 2z67_A 131 MYALTNKILESFFKQLGLN--VH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVL 207 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCC--CE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEE
T ss_pred HHHHHHHHHHHHHHHcCCC--CC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEec
Confidence 5667788888888888853 34 99999999 455545555433 678899999999999999999999999998743
Q ss_pred -CCCCcCCHHHHHhhh-c----cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCcccc
Q 012095 211 -SENFLLDPKVLESKL-T----EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF 284 (471)
Q Consensus 211 -~~~~~ld~e~l~~~l-~----~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~ 284 (471)
++++.+|+++|++++ + .++.+|++++|+||||.+.+ +++|.++|+++ ++++++|++|..+.++- .....
T Consensus 208 ~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~---l~~I~~la~~~-g~~v~vD~A~~~~~~g~-~~~~~ 282 (456)
T 2z67_A 208 DGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD---IVEIAKICENY-DIPHIINGAYAIQNNYY-LEKLK 282 (456)
T ss_dssp ETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHH-TCCEEEECTTTTTCHHH-HHHHH
T ss_pred cCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHc-CCcEEEECcchHHHHHh-hHHHH
Confidence 356789999999999 5 35667778999999999999 89999999999 99999999998754310 00011
Q ss_pred ccCCCCCCceEEEecCCcccCccchhheeeEc-CHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHH
Q 012095 285 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (471)
Q Consensus 285 ~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~-~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~ 363 (471)
..+.. +..+++.|++|.++ +++++||+++ ++++++.+...........+.+.+.++...+. .++++++.++
T Consensus 283 ~~~~~--~~D~~~~s~hK~~~-~p~g~G~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~aal~~l~-----~~~~~~~~~~ 354 (456)
T 2z67_A 283 KAFKY--RVDAVVSSSDKNLL-TPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMG-----SKNYLELVKN 354 (456)
T ss_dssp HHHTS--CCSEEEEEHHHHHC-CCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred HhhCC--CCCEEEEcCCCCcC-CCCCeEEEEEcCHHHHhhcCcCCCCCCCCCHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 11111 22367889999864 6789999999 57888776432111111122444444444443 4667888999
Q ss_pred HHHHHHHHHHHhcCCC---CCeeeCCCcceEEeEec--CCccCCcccCCCCCCCHHHHHHHHHHcCCE---EEE------
Q 012095 364 FRERRDFLVKSFGELE---GVKMSEPQGAFYLFIDF--STYYGSEAEGFGKIENSESLCRYLLDKAQV---ALV------ 429 (471)
Q Consensus 364 ~~~~r~~l~~~L~~~~---g~~~~~p~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV---~v~------ 429 (471)
+.++++++.+.|.+++ |+.+.+|+ ++ +++++ +. ...++.+.|.++ || .+.
T Consensus 355 ~~~~~~~l~~~L~~~~~~~g~~v~~~~-~~-v~~~~~~~~-------------~~~~l~~~L~~~-gi~~~rv~~~~g~f 418 (456)
T 2z67_A 355 QKNSKKLLDELLNDLSKKTGGKFLDVE-SP-IASCISVNS-------------DPVEIAAKLYNL-RVTGPRGIKKTDHF 418 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCBCCCC-CS-SEEEEECSS-------------CHHHHHHHHHHT-TEESCEEECTTCHH
T ss_pred HHHHHHHHHHHHHhcccccCCEecCCC-Ce-EEEEEeccc-------------HHHHHHHHHHHc-CCCcceEEeecCcc
Confidence 9999999999999886 77777777 54 55566 31 246788888876 54 444
Q ss_pred CCCCCC--CCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012095 430 PGDAFG--DDTCIRISYAA--SLTTLQAAVERIKKGL 462 (471)
Q Consensus 430 pg~~f~--~~~~iRis~~~--~~e~i~~~~~~l~~~l 462 (471)
+|..|. ..+++|+|++. +++++++++++|++++
T Consensus 419 ~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 419 GNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp HHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred ccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 233332 24799999984 8999999999998754
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.9e-26 Score=234.64 Aligned_cols=333 Identities=11% Similarity=0.126 Sum_probs=232.3
Q ss_pred ChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh----c-------
Q 012095 109 TPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV----C------- 176 (471)
Q Consensus 109 ~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l----~------- 176 (471)
.++.+.+++.....+ ....|...++..++++.+.+++.+.+|.+ ..+++++|+|+++++..++.++ +
T Consensus 112 ~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~-~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~ 190 (497)
T 2qma_A 112 LMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLS-EKADGIFTSGGTQSNQMGLMLARDWIADKLSGHS 190 (497)
T ss_dssp BHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCC-TTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred cHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCC-CCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccc
Confidence 367777776554433 33456555567889999999999999864 3379999999999999888873 3
Q ss_pred --CC------CC-eEEEcCCCCCChHHHHHHcCC---EEEEecCCCCCCCcCCHHHHHhhhccC----Cc--EEEEcCCC
Q 012095 177 --SP------GD-EVIIPAPFWVSYPEMARIADA---TPVILPTRISENFLLDPKVLESKLTEK----SR--LLILCSPS 238 (471)
Q Consensus 177 --~~------gd-~Vlv~~p~y~~~~~~~~~~G~---~~~~v~~~~~~~~~ld~e~l~~~l~~~----~~--~i~i~~p~ 238 (471)
.+ || .|+++++.|.++...++..|. +++.+|++ .++.+|+++|+++++++ ++ +|++++++
T Consensus 191 ~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~ 268 (497)
T 2qma_A 191 IQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDAN--ADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGT 268 (497)
T ss_dssp HHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC--TTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSC
T ss_pred hhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecC--CCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCC
Confidence 13 46 799999999999999999876 79999986 45789999999998653 44 77789999
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCH
Q 012095 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 318 (471)
Q Consensus 239 NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~ 318 (471)
||||...+ +++|+++|++| ++++++|++|..+.+....... +.+.....+++.|++|.++.+ +++||+++++
T Consensus 269 ~~tG~~~~---l~~I~~l~~~~-~~~l~vD~a~~~~~~~~~~~~~---~~gi~~~D~i~~s~hK~l~~p-~~~G~l~~~~ 340 (497)
T 2qma_A 269 TDHGAIDD---LDFIADMAVKH-DMWMHVDGAYGGALILSSHKSR---LKGVERAHSISVDFHKLFYQT-ISCGALLVND 340 (497)
T ss_dssp TTTCCBCC---HHHHHHHHHHH-TCEEEEEETTGGGGGGSTTGGG---GTTGGGCSEEEEETTTTTCCC-SSCEEEEESC
T ss_pred CCCCCCCC---HHHHHHHHHHc-CCEEEEehhhhHHHHhCcchHh---hcCcccCCEEEEcchhccCCC-cceEEEEEeC
Confidence 99999888 99999999999 9999999999986653221111 111112337788999998745 7999998754
Q ss_pred -HHHHHHHHHHhcccCC----CC-------------hHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 012095 319 -HFVAACNKIQSQFTSG----AS-------------SISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 380 (471)
Q Consensus 319 -~~i~~l~~~~~~~~~~----~~-------------~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g 380 (471)
..++.+.....+.... ++ .+.+.++...+ ..++++++.++..++++++.+.|++++|
T Consensus 341 ~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~l-----g~~g~~~~~~~~~~~a~~l~~~L~~~~~ 415 (497)
T 2qma_A 341 KSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNV-----GPKALGDMYDHLLAQTLEVADMIRTNDQ 415 (497)
T ss_dssp GGGGGGGCC--------------------CCSCCCTHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHh-----CHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 3333332100000000 11 12222222222 3567888889999999999999999889
Q ss_pred Ceee-CCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee---cCHHHHHHHHH
Q 012095 381 VKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA---ASLTTLQAAVE 456 (471)
Q Consensus 381 ~~~~-~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~---~~~e~i~~~~~ 456 (471)
+++. +|.+++ +++++... +... .....++.+.|.++ |+.+.++..+...+++|+++. .++++++++++
T Consensus 416 ~~~~~~~~~~~-v~f~~~~~-~~~~-----~~l~~~l~~~l~~~-G~~~~~~~~~~g~~~lRis~~~~~~t~edi~~~~~ 487 (497)
T 2qma_A 416 FELLAEPSLST-VLFRATHE-TADL-----DELNKALRLEALTR-GIAVLGETIVDGKTALKFTILNPCLTTSDFESLLS 487 (497)
T ss_dssp EEECSCCSSSE-EEEEECCS-SSCH-----HHHHHHHHHHHHHH-TSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHH
T ss_pred eEEEcCCCceE-EEEEEcCC-ccCH-----HHHHHHHHHHHHhC-CCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHH
Confidence 8874 566665 55566431 0000 00124566777766 888776655555578999984 38999999999
Q ss_pred HHHHHHHhh
Q 012095 457 RIKKGLLTL 465 (471)
Q Consensus 457 ~l~~~l~~~ 465 (471)
+|+++++++
T Consensus 488 ~l~~~~~~~ 496 (497)
T 2qma_A 488 KINMLAVEL 496 (497)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999988764
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-25 Score=222.37 Aligned_cols=280 Identities=14% Similarity=0.180 Sum_probs=198.3
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH-----HHcCCEEEEecC
Q 012095 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA-----RIADATPVILPT 208 (471)
Q Consensus 134 ~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~-----~~~G~~~~~v~~ 208 (471)
..+|++.++++ .|. ++.++++++++++.. +..++++||+|++++|+|.+....+ +..|++++.++.
T Consensus 69 ~~~l~~~la~l----~g~----~~~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 139 (400)
T 3nmy_A 69 RFAYERCVAAL----EGG----TRAFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDL 139 (400)
T ss_dssp HHHHHHHHHHH----HTC----SEEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECT
T ss_pred HHHHHHHHHHH----hCC----CCEEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECC
Confidence 34555555554 442 367777777999997 5678899999999999998655543 346999999986
Q ss_pred CCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCC
Q 012095 209 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 288 (471)
Q Consensus 209 ~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 288 (471)
+ |++++++++++++++|++++|+||||.+++ +++|+++|++| ++++|+||+|....+.. + ..
T Consensus 140 ~-------d~~~l~~~i~~~~~~v~~e~~~np~G~~~~---l~~i~~la~~~-g~~livDe~~~~~~~~~----~-~~-- 201 (400)
T 3nmy_A 140 T-------DPAAFKAAIRADTKMVWIETPTNPMLKLVD---IAAIAVIARKH-GLLTVVDNTFASPMLQR----P-LS-- 201 (400)
T ss_dssp T-------SHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTHHHHCC----G-GG--
T ss_pred C-------CHHHHHHHhccCCCEEEEECCCCCCCeeec---HHHHHHHHHHc-CCEEEEECCCcccccCC----h-hh--
Confidence 3 899999999999999999999999999998 99999999999 99999999997533221 1 11
Q ss_pred CCCCceEEEecCCcccCccchhhee--eE-cCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHH
Q 012095 289 GMWERTLTVNGFSKAFAMTGWRLGY--IA-GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 365 (471)
Q Consensus 289 ~~~~~~i~~~S~SK~~g~~G~R~G~--v~-~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~ 365 (471)
.+..+++.|+||.++.+|.++|+ ++ .++++++.+.......+.+.+++...++...++. +....++..
T Consensus 202 --~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~-------l~~r~~~~~ 272 (400)
T 3nmy_A 202 --LGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKT-------LPLRMRAHC 272 (400)
T ss_dssp --GTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHTT-------HHHHHHHHH
T ss_pred --cCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHhH-------HHHHHHHHH
Confidence 24559999999999878788765 33 4788999988877777777888877666666553 445566677
Q ss_pred HHHHHHHHHhcCCCCCeee-CCC----------------cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEE
Q 012095 366 ERRDFLVKSFGELEGVKMS-EPQ----------------GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL 428 (471)
Q Consensus 366 ~~r~~l~~~L~~~~g~~~~-~p~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v 428 (471)
+++..+.+.|++.|.+..+ .|. .|..+++.++... .....|.+.| +-.++.+
T Consensus 273 ~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~----------~~~~~~~~~l-~~~~~~~ 341 (400)
T 3nmy_A 273 ENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGF----------DAAKRFCEKT-ELFTLAE 341 (400)
T ss_dssp HHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH----------HHHHHHHHHC-SSSEECS
T ss_pred HHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcH----------HHHHHHHHcC-CcceEec
Confidence 8888888999888776432 221 2455788885310 0234455543 2234445
Q ss_pred ECCCCCC-----------------------CCCcEEEEeec-CHHHHHHHHHHHHHHHH
Q 012095 429 VPGDAFG-----------------------DDTCIRISYAA-SLTTLQAAVERIKKGLL 463 (471)
Q Consensus 429 ~pg~~f~-----------------------~~~~iRis~~~-~~e~i~~~~~~l~~~l~ 463 (471)
..|..+. .++.+|+|++. +.+ +.++.|+++++
T Consensus 342 s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle~~~---dli~dl~~al~ 397 (400)
T 3nmy_A 342 SLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIEDLG---DLRGDLERALV 397 (400)
T ss_dssp CCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHH---HHHHHHHHHHC
T ss_pred CCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCcCCHH---HHHHHHHHHHh
Confidence 5554321 13689999998 333 34455666654
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.8e-25 Score=225.70 Aligned_cols=337 Identities=14% Similarity=0.072 Sum_probs=217.0
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCC-CCCCC------CCCCHHHHHHHHHHHHHHhCCCCCCC-cEEEeCChHHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGF-TRYTP------NAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQS 167 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~-~~Y~~------~~G~~~lr~~ia~~~~~~~g~~~~~~-~i~it~G~~~a 167 (471)
+.|.|-.+++. +++.|.+++...+.+.. .+|+. ..-..+|++...+++++.+|.+.+.. ..+++++++++
T Consensus 55 ~~i~lias~n~--~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~A 132 (490)
T 2a7v_A 55 RGLELIASENF--CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPA 132 (490)
T ss_dssp HSEECCTTCCC--CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHH
T ss_pred cCceEECCCCC--CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHH
Confidence 35777765544 58899999988775532 23321 12234677666688888888532111 23455678899
Q ss_pred HHHHHHHhcCCCCeEEEcCCCCCChHH--------HHHHcCCEEE--EecCCCCCCCcCCHHHHHhhhc-cCCcEEEEcC
Q 012095 168 ILQAVLAVCSPGDEVIIPAPFWVSYPE--------MARIADATPV--ILPTRISENFLLDPKVLESKLT-EKSRLLILCS 236 (471)
Q Consensus 168 l~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~G~~~~--~v~~~~~~~~~ld~e~l~~~l~-~~~~~i~i~~ 236 (471)
+..++.++++|||+|+++++.|.++.. .+...|..+. .+++++ .++.+|++++++++. .++|+|++++
T Consensus 133 n~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~-~~~~iD~d~le~~l~~~~~klIi~~~ 211 (490)
T 2a7v_A 133 NLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNP-KTGLIDYNQLALTARLFRPRLIIAGT 211 (490)
T ss_dssp HHHHHHHHCCSCEECCC-------------------------------CCBCT-TTCSBCHHHHHHHHHHHCCSEEEECC
T ss_pred HHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEeccccc-ccCCcCHHHHHHHHhhcCCcEEEEcC
Confidence 999999999999999999998865431 2345565444 444443 346799999999986 4789998899
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCC-ccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeE
Q 012095 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 315 (471)
Q Consensus 237 p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~ 315 (471)
++||+ ..+ +++|.++|++| |+++++|++|. ++.+.+....++ . ...+++.|+||++ .|+|.|+++
T Consensus 212 s~~~~--~~d---l~~i~~ia~~~-g~~livD~Ah~~glv~~g~~~~~~-~-----~aDiv~~S~hK~l--~Gp~GG~i~ 277 (490)
T 2a7v_A 212 SAYAR--LID---YARMREVCDEV-KAHLLADMAHISGLVAAKVIPSPF-K-----HADIVTTTTHKTL--RGARSGLIF 277 (490)
T ss_dssp SSCCS--CCC---HHHHHHHHHHT-TCEEEEECGGGHHHHHTTSSCCGG-G-----TCSEEEEESSGGG--CSCSCEEEE
T ss_pred CCCCC--ccc---HHHHHHHHHHc-CCEEEEccccccccccCCcCCCCC-C-----CCCEEEECCcccC--ccccchhee
Confidence 99875 456 89999999999 99999999975 344443322222 1 2238899999997 477889999
Q ss_pred cCHH---------------HHHHHHHHHhcccC-CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCC
Q 012095 316 GPKH---------------FVAACNKIQSQFTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE 379 (471)
Q Consensus 316 ~~~~---------------~i~~l~~~~~~~~~-~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 379 (471)
++++ +.+++.+...+... +++.....+...++... .....++..+++.++++++.+.|.+.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~--~~~~~~~~~~~~~~na~~L~~~L~~~- 354 (490)
T 2a7v_A 278 YRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQA--CTPMFREYSLQVLKNARAMADALLER- 354 (490)
T ss_dssp EECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred eccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHc-
Confidence 8764 55666665443332 33444344444455431 11234777888899999999999987
Q ss_pred CCeeeC-CCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC-----CCCcEEEEee------cC
Q 012095 380 GVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-----DDTCIRISYA------AS 447 (471)
Q Consensus 380 g~~~~~-p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~-----~~~~iRis~~------~~ 447 (471)
|+++.. +...+++|++++.. + .+..++.+.| ++.||.+..+..++ .+..|||+.. .+
T Consensus 355 G~~v~~~~t~t~lv~vdl~~~-g---------~~~~~~~~~L-~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~ 423 (490)
T 2a7v_A 355 GYSLVSGGTDNHLVLVDLRPK-G---------LDGARAERVL-ELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFR 423 (490)
T ss_dssp TCEEGGGSCSSSEEEEECTTT-T---------CCHHHHHHHH-HHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCC
T ss_pred CcEEecCCCCCeEEEEEeCCC-C---------CCHHHHHHHH-HhCCeEEecCccCCCCCCCCCCceEecccccccCCCC
Confidence 888864 34467789988642 1 1566666655 56699998655444 2468999763 27
Q ss_pred HHHHHHHHHHHHHHHH
Q 012095 448 LTTLQAAVERIKKGLL 463 (471)
Q Consensus 448 ~e~i~~~~~~l~~~l~ 463 (471)
+++++++++.|.+++.
T Consensus 424 ~~d~~~~~~~i~~~l~ 439 (490)
T 2a7v_A 424 EDDFRRVVDFIDEGVN 439 (490)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999999988875
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-25 Score=228.79 Aligned_cols=332 Identities=14% Similarity=0.105 Sum_probs=242.9
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--------CcEEEeCChHHHHHHHHHHhcC----
Q 012095 110 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP--------DQILVSNGAKQSILQAVLAVCS---- 177 (471)
Q Consensus 110 p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~--------~~i~it~G~~~al~~~~~~l~~---- 177 (471)
|..+.+.+..++..+...|...++..++++.+.+++.+.+|.+... ...++|+|+++++..++.+..+
T Consensus 92 ~~~~~~~~~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~ 171 (481)
T 4e1o_A 92 PSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKIL 171 (481)
T ss_dssp HHHHHHHHHHHHCCCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHH
Confidence 5566777778877777888888899999999999999999975322 3679999999999888776532
Q ss_pred ---------------CCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccC------CcEEEEcC
Q 012095 178 ---------------PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK------SRLLILCS 236 (471)
Q Consensus 178 ---------------~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~------~~~i~i~~ 236 (471)
+++.|++++++|.++...++..|++++.+|++ .++.+|+++|+++++++ +.+|+++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~~--~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~ 249 (481)
T 4e1o_A 172 EMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVD--DNFSLRGEALQKAIEEDKQRGLVPVFVCATL 249 (481)
T ss_dssp HHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEB
T ss_pred HhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEcC--CCCcCCHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 56799999999999999999999999999985 46789999999999753 66777899
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEc
Q 012095 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 316 (471)
Q Consensus 237 p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~ 316 (471)
++|+||.+-+ +++|+++|++| ++++++|++|....+........ +.+...-..+..+++|.++.| .-+|+++.
T Consensus 250 ~~t~~G~id~---l~~I~~la~~~-~~~lhvDaA~g~~~~~~~~~~~~--~~gi~~aDsi~~~~hK~l~~p-~g~g~l~~ 322 (481)
T 4e1o_A 250 GTTGVCAFDC---LSELGPICARE-GLWLHIDAAYAGTAFLCPEFRGF--LKGIEYADSFTFNPSKWMMVH-FDCTGFWV 322 (481)
T ss_dssp SCTTTCCBCC---HHHHHHHHHHH-TCEEEEECTTGGGGGGSGGGGGG--GTTGGGCSEEEECHHHHSSCC-SSCEEEEE
T ss_pred CCCCCcCcCC---HHHHHHHHHHc-CCeEEeehhhHHHHHhChhhHHH--hcCcccCCEEEEChHHhcCCC-CceEEEEE
Confidence 9999999988 99999999999 99999999998754322111111 111111235677899999755 45666665
Q ss_pred C-HHHHHHHHHHHhcc---------------c--C--CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhc
Q 012095 317 P-KHFVAACNKIQSQF---------------T--S--GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 376 (471)
Q Consensus 317 ~-~~~i~~l~~~~~~~---------------~--~--~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~ 376 (471)
. +..+.........+ . . ....+.+.++..++. .+.++++.++..++++++.+.|+
T Consensus 323 ~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g-----~~g~~~~~~~~~~~a~~l~~~L~ 397 (481)
T 4e1o_A 323 KDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFG-----VKNLQAHVRHGTEMAKYFESLVR 397 (481)
T ss_dssp SBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 44433211100000 0 0 013445555555553 56788889999999999999999
Q ss_pred CCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec---CHHHHHH
Q 012095 377 ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQA 453 (471)
Q Consensus 377 ~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~---~~e~i~~ 453 (471)
+++|+++..+....+++++++..- ....++.++|.+++.+.+.|+.. ....++|+++.. ++++|++
T Consensus 398 ~~~g~~~~~~~~~~~v~f~~~~~~----------~~~~~l~~~L~~~g~~~~~~~~~-~g~~~lR~~~~~~~tt~~di~~ 466 (481)
T 4e1o_A 398 NDPSFEIPAKRHLGLVVFRLKGPN----------SLTENVLKEIAKAGRLFLIPATI-QDKLIIRFTVTSQFTTRDDILR 466 (481)
T ss_dssp TCTTEECCSCCCSSEEEEEESSCH----------HHHHHHHHHHHHHCSSBCEEEEE-TTEEEEEEECCCTTCCHHHHHH
T ss_pred cCCCeEEecCCceeEEEEEeCCch----------HHHHHHHHHHHhCCeEEEEeeEE-CCEEEEEEEeCCCCCCHHHHHH
Confidence 999999876555556777775320 13578899998885566666443 234689999775 7899999
Q ss_pred HHHHHHHHHHhhC
Q 012095 454 AVERIKKGLLTLR 466 (471)
Q Consensus 454 ~~~~l~~~l~~~~ 466 (471)
++++|+++++++.
T Consensus 467 ~~~~i~~~~~~l~ 479 (481)
T 4e1o_A 467 DWNLIRDAATLIL 479 (481)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987653
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.8e-25 Score=227.36 Aligned_cols=334 Identities=14% Similarity=0.130 Sum_probs=231.9
Q ss_pred hHHHHH-HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhc-------C-CCC
Q 012095 110 PVLIAE-AGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-------S-PGD 180 (471)
Q Consensus 110 p~~v~~-a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~-------~-~gd 180 (471)
|..+.. .+..........|...++..++.+.+.+++.+.+|.+ ++++++|+|+++++..++.++. + +||
T Consensus 121 ~~~~~~~~l~~~~n~~~~~~~~s~~~~~le~~~~~~la~l~g~~--~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~ 198 (515)
T 2jis_A 121 PHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWS--SGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGL 198 (515)
T ss_dssp HHHHHHHHHHHHHCCCTTCTTTCHHHHHHHHHHHHHHHHHHTCS--SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCG
T ss_pred HHHHHHHHHHHHhccCCCchhhchHHHHHHHHHHHHHHHHhCCC--CCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCc
Confidence 554443 3443333333467666777888999999999888864 6899999999999988887763 2 576
Q ss_pred ------eEEEcCCCCCChHHHHHHcCC---EEEEecCCCCCCCcCCHHHHHhhhcc------CCcEEEEcCCCCCcccCC
Q 012095 181 ------EVIIPAPFWVSYPEMARIADA---TPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVY 245 (471)
Q Consensus 181 ------~Vlv~~p~y~~~~~~~~~~G~---~~~~v~~~~~~~~~ld~e~l~~~l~~------~~~~i~i~~p~NPtG~~~ 245 (471)
.|+++++.|+++...++..|. +++.+|++ .++.+|+++|++++++ ++++|++++|+||||.+.
T Consensus 199 ~~~~~~~vl~s~~~h~s~~~~~~~~g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~ 276 (515)
T 2jis_A 199 RTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKAD--ERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFD 276 (515)
T ss_dssp GGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC
T ss_pred cccCCeEEEECCCccHHHHHHHHHcCCCCCcEEEEecC--CCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCcc
Confidence 899999999999999999988 89999986 3577999999999975 488999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHH--HHHH
Q 012095 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH--FVAA 323 (471)
Q Consensus 246 ~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~--~i~~ 323 (471)
+ +++|+++|++| ++++++|++|+.+.+....... .+.+..+..+++.|++|.++ .+.++|+++++++ +++.
T Consensus 277 ~---l~~I~~la~~~-g~~l~vD~a~~~~~~~~~~~~~--~~~g~~~aD~v~~s~hK~l~-~p~g~G~l~~~~~~~~~~~ 349 (515)
T 2jis_A 277 P---LEAIADVCQRH-GLWLHVDAAWGGSVLLSQTHRH--LLDGIQRADSVAWNPHKLLA-AGLQCSALLLQDTSNLLKR 349 (515)
T ss_dssp C---HHHHHHHHHHH-TCEEEEEETTGGGGGGCTTTGG--GGTTGGGCSEEEECTTSTTC-CCSCCEEEEESCCSCHHHH
T ss_pred C---HHHHHHHHHHc-CCeEEEehhhhhHHHhChhhHh--hcCCCccCCEEEECcccccC-CCCCeeEEEEeChHHHHHH
Confidence 8 89999999999 9999999999987654321111 12221234588899999987 4467999998766 6654
Q ss_pred HH----HHH-h--c-----ccC---------CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCe
Q 012095 324 CN----KIQ-S--Q-----FTS---------GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 382 (471)
Q Consensus 324 l~----~~~-~--~-----~~~---------~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~ 382 (471)
.. ... . . +.. ....+.+.++..++. .+.++++.++..++++++.+.|++++|++
T Consensus 350 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg-----~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 424 (515)
T 2jis_A 350 CHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG-----DQGLERRIDQAFVLARYLVEEMKKREGFE 424 (515)
T ss_dssp HHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred HhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 21 110 0 0 000 012444555555553 45678888899999999999999998988
Q ss_pred eeC-CCcceEEeEecCCccCCcccCCCCCCC--------HHHHHHHHHHcCCEEE-ECCCCCCCCCcEEEEee---cCHH
Q 012095 383 MSE-PQGAFYLFIDFSTYYGSEAEGFGKIEN--------SESLCRYLLDKAQVAL-VPGDAFGDDTCIRISYA---ASLT 449 (471)
Q Consensus 383 ~~~-p~~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~Ll~~~gV~v-~pg~~f~~~~~iRis~~---~~~e 449 (471)
+.. |..+.+.|...|.... +.....+ ...+.+.|.++ |+.+ .+....+..+++|++++ .+++
T Consensus 425 ~~~~~~~~~v~f~~~p~~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~-G~~~~~~~~~~~~~~~lRis~~~~~~t~e 499 (515)
T 2jis_A 425 LVMEPEFVNVCFWFVPPSLR----GKQESPDYHERLSKVAPVLKERMVKE-GSMMIGYQPHGTRGNFFRVVVANSALTCA 499 (515)
T ss_dssp ESSCCSSSEEEEEECCGGGT----TCTTSTTHHHHHHTHHHHHHHHHHHH-TSCEEEEEEETTEEEEEEEECCCTTCCHH
T ss_pred EeCCCCeeEEEEEEeCcccc----ccccchhHHHHHHHHHHHHHHHHHhc-CCEEEEEEEECCceEEEEEEeCCCCCCHH
Confidence 764 4455555543342110 0000001 11356667766 6543 22111122468999995 3899
Q ss_pred HHHHHHHHHHHHHHh
Q 012095 450 TLQAAVERIKKGLLT 464 (471)
Q Consensus 450 ~i~~~~~~l~~~l~~ 464 (471)
++++++++|++++++
T Consensus 500 did~~~~~l~~~~~~ 514 (515)
T 2jis_A 500 DMDFLLNELERLGQD 514 (515)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988764
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-24 Score=214.71 Aligned_cols=315 Identities=13% Similarity=0.176 Sum_probs=220.4
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh-
Q 012095 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV- 175 (471)
Q Consensus 97 ~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l- 175 (471)
+|.+..+.+. .++.+++++.+++... .|.+..+..++++.++++++ . +++++++++++++..++.++
T Consensus 3 ~~~~~~~~~~--~~~~~~~a~~~~~~~~--~~~~~~~~~~l~~~la~~~~----~----~~~i~~~sGt~a~~~al~~~~ 70 (390)
T 3b8x_A 3 MINYPLASST--WDDLEYKAIQSVLDSK--MFTMGEYVKQYETQFAKTFG----S----KYAVMVSSGSTANLLMIAALF 70 (390)
T ss_dssp --CBCSCCCC--CCHHHHHHHHHHHHHT--CCSSCHHHHHHHHHHHHHHT----C----SEEEEESCHHHHHHHHHHHTT
T ss_pred ceeccCCCCC--CCHHHHHHHHHHHHcC--CCCCChHHHHHHHHHHHHHC----C----CcEEEECCHHHHHHHHHHHHH
Confidence 3444444433 3677888888888763 46677788999999999873 1 26777777778999999998
Q ss_pred ------cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHH
Q 012095 176 ------CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNL 249 (471)
Q Consensus 176 ------~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~ 249 (471)
+++||+|+++.|+|.++...++..|++++.++++++ ++.+|+++|++++++++++|++++ ++|...+
T Consensus 71 ~~~~~~~~~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~--- 143 (390)
T 3b8x_A 71 FTKKPRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDIN-TLNIDIESLKEAVTDSTKAILTVN---LLGNPNN--- 143 (390)
T ss_dssp SSSSCSCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTT-TCSBCHHHHHHHCCTTEEEEEEEC---GGGCCCC---
T ss_pred hhhhcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCcc-ccCcCHHHHHHHhCcCCeEEEEEC---CccChhh---
Confidence 789999999999999999999999999999998754 478999999999988899998864 5666667
Q ss_pred HHHHHHHHHhCCCeEEEEccCCCccc-cCCCCccccccCCCCCCceEEEec--CCcccCccchhheeeEcCH-HHHHHHH
Q 012095 250 LDEIARIVAKHPRLLVLSDEIYEHII-YAPATHTSFASLPGMWERTLTVNG--FSKAFAMTGWRLGYIAGPK-HFVAACN 325 (471)
Q Consensus 250 l~~i~~l~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~~i~~~S--~SK~~g~~G~R~G~v~~~~-~~i~~l~ 325 (471)
+++|.++|++| ++++|+|++|.... +++ ..... ...+...| .+|.++ +| +.|++++++ ++.+.+.
T Consensus 144 ~~~i~~l~~~~-~~~li~D~a~~~g~~~~~------~~~g~--~~~~~~~s~~~~k~~~-~g-~gG~~~~~~~~l~~~~~ 212 (390)
T 3b8x_A 144 FDEINKIIGGR-DIILLEDNCESMGATFNN------KCAGT--FGLMGTFSSFYSNHIA-TM-EGGCIVTDDEEIYHILL 212 (390)
T ss_dssp HHHHHHHHTTS-CCEEEEECTTCTTCEETT------EETTS--SSSEEEEECCTTSSSC-SS-SCEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHc-CCEEEEECcCcccCEECC------ccccc--ccceEEEEccCCCCCc-cC-CceEEEeCCHHHHHHHH
Confidence 99999999999 99999999998532 211 11111 11222222 245553 33 459999875 6777766
Q ss_pred HHHhcc-------------------------------cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHH
Q 012095 326 KIQSQF-------------------------------TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 374 (471)
Q Consensus 326 ~~~~~~-------------------------------~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~ 374 (471)
...... ++..+.+...++...| +++++..++.+++++++.+.
T Consensus 213 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l-------~~l~~~~~~~~~~~~~l~~~ 285 (390)
T 3b8x_A 213 CIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQL-------KKLPRFISVRRKNAEYFLDK 285 (390)
T ss_dssp HHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 543211 1114555554444444 34667788888899999999
Q ss_pred hcCCCCCeeeCC--Ccce-EEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEEC---CCCCCC-C----------
Q 012095 375 FGELEGVKMSEP--QGAF-YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP---GDAFGD-D---------- 437 (471)
Q Consensus 375 L~~~~g~~~~~p--~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~p---g~~f~~-~---------- 437 (471)
|.+++|+++..+ .+++ .+++.++...+ .+..++.+.|.++ ||.+.+ |..+.. +
T Consensus 286 L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~~ 355 (390)
T 3b8x_A 286 FKDHPYLDVQQETGESSWFGFSFIIKKDSG---------VIRKQLVENLNSA-GIECRPIVTGNFLKNTDVLKYFDYTVH 355 (390)
T ss_dssp HTTCSSEEECCCCSBCCCCEEEEEECTTSC---------CCHHHHHHHHHHT-TBCCBCSTTSSGGGCHHHHTTCEEEES
T ss_pred hcCCCCcccCCCCCCcccEEEEEEecCcCc---------ccHHHHHHHHHHC-CCCeeeecCCchhhcchhhhcCCCCCc
Confidence 999888877643 2343 24556652100 1577888888664 999887 321111 0
Q ss_pred -----------CcEEEEeec--CHHHHHHHHHHH
Q 012095 438 -----------TCIRISYAA--SLTTLQAAVERI 458 (471)
Q Consensus 438 -----------~~iRis~~~--~~e~i~~~~~~l 458 (471)
+.+||++.. ++++++++++.|
T Consensus 356 ~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 356 NNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp SCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred CCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 259999987 899999988865
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-25 Score=227.18 Aligned_cols=332 Identities=11% Similarity=0.048 Sum_probs=238.8
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC-------CcEEEeCChHHHHHHHHHHhcC-----
Q 012095 110 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP-------DQILVSNGAKQSILQAVLAVCS----- 177 (471)
Q Consensus 110 p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~-------~~i~it~G~~~al~~~~~~l~~----- 177 (471)
|..+.+.+..++..+...|...++..+|++.+.+++.+.+|.+... ...++|+|+++++..++.+..+
T Consensus 87 ~~~~~~~l~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~ 166 (475)
T 3k40_A 87 PAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKE 166 (475)
T ss_dssp HHHHHHHHHHHHCCCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHH
Confidence 4556667777776666778888889999999999999999965321 3689999999998877776521
Q ss_pred --------------CCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccC------CcEEEEcCC
Q 012095 178 --------------PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK------SRLLILCSP 237 (471)
Q Consensus 178 --------------~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~------~~~i~i~~p 237 (471)
+++.|++++++|.++...++..|++++.||++ .++ +|+++|+++++++ +++|+++.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d--~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~ 243 (475)
T 3k40_A 167 VKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSE--NHR-MRGAALEKAIEQDVAEGLIPFYAVVTLG 243 (475)
T ss_dssp HHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTCEEEEECCB--TTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBS
T ss_pred hhccCcccccccccCCeEEEECCCchHHHHHHHHHcCCceEEEECC--CCC-cCHHHHHHHHHHHHHCCCccEEEEEEec
Confidence 34689999999999999999999999999986 346 9999999999754 567778999
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcC
Q 012095 238 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 317 (471)
Q Consensus 238 ~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~ 317 (471)
+|+||.+.+ +++|+++|++| |+++++|++|+...+........ +.+......+..+++|.++ ....+|+++..
T Consensus 244 ~t~~G~~~~---l~~I~~la~~~-~~~lhvD~A~~~~~~~~~~~~~~--~~gi~~~Ds~~~~~hK~l~-~p~g~g~l~~~ 316 (475)
T 3k40_A 244 TTNSCAFDY---LDECGPVGNKH-NLWIHVDAAYAGSAFICPEYRHL--MKGIESADSFNFNPHKWML-VNFDCSAMWLK 316 (475)
T ss_dssp CTTTCCBCC---HHHHHHHHHHT-TCEEEEECTTGGGGGGSGGGGGG--GTTGGGCSEEEECHHHHSS-CCSSCEEEEES
T ss_pred CCCCcCcCC---HHHHHHHHHHh-CCeEEEeHHhHHHHHhCHhhHHH--hcCcccCCEEEECchhccC-CCCceEEEEEe
Confidence 999999988 99999999999 99999999998753321111111 1111122467788999886 33567877764
Q ss_pred H-HHH-HHHHHHHhcc--------------cC-C---CChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC
Q 012095 318 K-HFV-AACNKIQSQF--------------TS-G---ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377 (471)
Q Consensus 318 ~-~~i-~~l~~~~~~~--------------~~-~---~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 377 (471)
+ +.+ +.+.....+. .. + ...+.+.++..++. .+.++++.+++.++++++.+.|++
T Consensus 317 ~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g-----~~g~~~~~~~~~~~a~~l~~~L~~ 391 (475)
T 3k40_A 317 DPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYG-----VENLQAHIRRHCNFAKQFGDLCVA 391 (475)
T ss_dssp SGGGC---------------------------CCCGGGTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3 332 2221110000 00 0 12333444444442 466888899999999999999999
Q ss_pred CCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec---CHHHHHHH
Q 012095 378 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAA 454 (471)
Q Consensus 378 ~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~---~~e~i~~~ 454 (471)
++|+++..+.....++++++..- ....++.++|.+++++.+.|+..++ ..++|+++.. ++++|+++
T Consensus 392 ~~g~~l~~~~~~~iv~f~~~~~~----------~~~~~l~~~L~~~g~~~~~~~~~~g-~~~lR~~~~~~~tt~~di~~~ 460 (475)
T 3k40_A 392 DSRFELAAEINMGLVCFRLKGSN----------ERNEALLKRINGRGHIHLVPAKIKD-VYFLRMAICSRFTQSEDMEYS 460 (475)
T ss_dssp STTEEESSCCBTTEEEEEESSCH----------HHHHHHHHHHHHHTSCBCEEEEETT-EEEEEEECCCTTCCHHHHHHH
T ss_pred CCCEEEecCCceEEEEEEeCCch----------HHHHHHHHHHHhCCcEEEEeeEECC-EEEEEEEeCCCCCCHHHHHHH
Confidence 99999876555555677775320 1367899999988666677655443 5689999874 78999999
Q ss_pred HHHHHHHHHhhCC
Q 012095 455 VERIKKGLLTLRP 467 (471)
Q Consensus 455 ~~~l~~~l~~~~~ 467 (471)
+++|+++++++..
T Consensus 461 ~~~i~~~~~~~~~ 473 (475)
T 3k40_A 461 WKEVSAAADEMEQ 473 (475)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887654
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.92 E-value=6e-24 Score=215.73 Aligned_cols=258 Identities=15% Similarity=0.184 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcC-CCCCChHHHHH----------HcCCEEE
Q 012095 136 ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA-PFWVSYPEMAR----------IADATPV 204 (471)
Q Consensus 136 ~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~-p~y~~~~~~~~----------~~G~~~~ 204 (471)
..++.+++++++.+|.+....+++++ |+++++..++.++++|||+|++++ |.|..+...+. ..|++++
T Consensus 65 ~~~~~l~~~la~~~g~~~~~~~i~~~-sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~ 143 (431)
T 3ht4_A 65 IGRDTLEKVYADVFGAEAGLVRPQII-SGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYN 143 (431)
T ss_dssp HHHHHHHHHHHHHTTCSEECCBTTSC-SHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEE
T ss_pred hhHHHHHHHHHHHhCCCcccccceee-CHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEE
Confidence 45777777777777854333344455 668999999999999999999998 99999986653 4799999
Q ss_pred EecCCCCCCCcCCHHHHHhhhccCCcEEEEc-CCCCCcccCCCHHHHHHHHHHHHh--CCCeEEEEccCCCccccCCCCc
Q 012095 205 ILPTRISENFLLDPKVLESKLTEKSRLLILC-SPSNPTGSVYPKNLLDEIARIVAK--HPRLLVLSDEIYEHIIYAPATH 281 (471)
Q Consensus 205 ~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~-~p~NPtG~~~~~~~l~~i~~l~~~--~~~~~ii~De~y~~~~~~~~~~ 281 (471)
.++++. ++.+|++++++++++++++|+++ +||||+|.+.+.+++++|+++|++ + ++++|+||+|..+.++...
T Consensus 144 ~v~~~~--~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~-~~~livDea~~~~~~~~~~- 219 (431)
T 3ht4_A 144 AVPLTE--GGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKP-DVVVFVDNCYGEFIEEQEP- 219 (431)
T ss_dssp ECCBCT--TSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCT-TCEEEEECTTCTTSSSCCG-
T ss_pred EeCCCC--CCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCC-CCEEEEeCCChhhccCCCc-
Confidence 999864 36799999999999999999998 699999999999999999999999 9 9999999999987654321
Q ss_pred cccccCCCCCCceEEEecCCcccCc-cchhheeeEcCHHHHHHHHHHHhcccC----CCChHHHHHHHHHHhccCCChHH
Q 012095 282 TSFASLPGMWERTLTVNGFSKAFAM-TGWRLGYIAGPKHFVAACNKIQSQFTS----GASSISQKAGVAALGLGYAGGEV 356 (471)
Q Consensus 282 ~~~~~~~~~~~~~i~~~S~SK~~g~-~G~R~G~v~~~~~~i~~l~~~~~~~~~----~~~~~~q~aa~~~L~~~~~~~~~ 356 (471)
..+ +..++++||||.+|- .+...||+++++++++.+......... +++...+.++...+. .
T Consensus 220 ---~~~----g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~-------~ 285 (431)
T 3ht4_A 220 ---CHV----GADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFF-------L 285 (431)
T ss_dssp ---GGT----TCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHH-------H
T ss_pred ---ccc----CCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccccCccHHHHHHHHhHhh-------h
Confidence 111 234999999999652 113339999999999998875543222 121111233333332 3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCeeeCC----CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcC
Q 012095 357 VSKMVKAFRERRDFLVKSFGELEGVKMSEP----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 424 (471)
Q Consensus 357 ~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~ 424 (471)
+...+++..++++++.+.|+++ |+++.+. ..+..+.+.+++. ....+|++.|.+..
T Consensus 286 ~~~~~~~~~~~a~~l~~~L~~~-g~~v~p~~~~~~~~li~~i~l~~~-----------~~~~~~~~~l~~~~ 345 (431)
T 3ht4_A 286 APHVAGQALKGAIFTAAFLEKL-GMNTSPAWNAPRTDLIQSVQFDDK-----------DRMIAFCQAIQYAS 345 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TCCEESCTTSCCSSSCCEEECCCH-----------HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-cCEecCCCCCCCccEEEEEEeCCH-----------HHHHHHHHHHHhcC
Confidence 4566677788888888888887 6665432 2233455666532 14567888877653
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=8.2e-24 Score=214.80 Aligned_cols=216 Identities=12% Similarity=0.094 Sum_probs=158.6
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEe-cC
Q 012095 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVIL-PT 208 (471)
Q Consensus 134 ~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~G~~~~~v-~~ 208 (471)
..++++.+++++ |. .+.+ +++++++++..++.+++++||+|+++.++|.++...+ +..|++++.+ +.
T Consensus 60 ~~~l~~~la~~~----g~---~~~v-~~~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 131 (421)
T 2ctz_A 60 VDVLEKRLAALE----GG---KAAL-ATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSRE 131 (421)
T ss_dssp HHHHHHHHHHHH----TC---SEEE-EESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTT
T ss_pred HHHHHHHHHHHh----CC---CceE-EecCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCC
Confidence 467777777775 32 2344 4555599999999999999999999999999887664 7789999998 65
Q ss_pred CCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCC-CccccCCCCccccccC
Q 012095 209 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY-EHIIYAPATHTSFASL 287 (471)
Q Consensus 209 ~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~ 287 (471)
+ |++++++++++++++|++++|+||||.+++ +++|.++|++| ++++|+|++| ... +.+. .+ .
T Consensus 132 ~-------d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~-g~~livD~~~~~~g-~~~~---~~-~- 194 (421)
T 2ctz_A 132 E-------RPEEFLALTDEKTRAWWVESIGNPALNIPD---LEALAQAAREK-GVALIVDNTFGMGG-YLLR---PL-A- 194 (421)
T ss_dssp C-------CHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHH-TCEEEEECGGGGGG-TSCC---GG-G-
T ss_pred C-------CHHHHHHhhccCCeEEEEECCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCccccc-ccCC---cc-c-
Confidence 2 899999999999999999999999999999 99999999999 9999999999 532 2211 11 1
Q ss_pred CCCCCceEEEecCCcccCccchhheeeEcC---HHH----HHHHHH----------------------H----HhcccCC
Q 012095 288 PGMWERTLTVNGFSKAFAMTGWRLGYIAGP---KHF----VAACNK----------------------I----QSQFTSG 334 (471)
Q Consensus 288 ~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~---~~~----i~~l~~----------------------~----~~~~~~~ 334 (471)
.+..+++.|++|.++.+|.|+|++++. .++ ++.+.. . .......
T Consensus 195 ---~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~ 271 (421)
T 2ctz_A 195 ---WGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQA 271 (421)
T ss_dssp ---GTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCC
T ss_pred ---cCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCC
Confidence 234589999999999899999998874 122 122210 0 0112234
Q ss_pred CChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeee
Q 012095 335 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (471)
Q Consensus 335 ~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~ 384 (471)
.+++..+++...++. +....++..++.+++.+.|.++|++.+.
T Consensus 272 ~~~~~a~~~~~~l~~-------l~~r~~~~~~~a~~l~~~L~~~p~v~~v 314 (421)
T 2ctz_A 272 LGPFEAWVVLLGMET-------LSLRAERHVENTLHLAHWLLEQPQVAWV 314 (421)
T ss_dssp CCHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHHHTCTTEEEE
T ss_pred CCHHHHHHHHcCcch-------HHHHHHHHHHhHHHHHHHHHhCCCeeEE
Confidence 555554444444432 4445556667888899999998887764
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.5e-24 Score=213.78 Aligned_cols=252 Identities=15% Similarity=0.178 Sum_probs=183.8
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCcEEE---eCChHHHHHHHHHHhcCCCCeEEEcC-CCCCChHHH----------H
Q 012095 131 NAGTLELRSAICHKLKEENGLSYTPDQILV---SNGAKQSILQAVLAVCSPGDEVIIPA-PFWVSYPEM----------A 196 (471)
Q Consensus 131 ~~G~~~lr~~ia~~~~~~~g~~~~~~~i~i---t~G~~~al~~~~~~l~~~gd~Vlv~~-p~y~~~~~~----------~ 196 (471)
..|..+|++.+++++ | .+..++ ++|+++++..++.++++|||+|++++ |.|..+... +
T Consensus 58 ~~~~~~Le~~lA~l~----g----~e~alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l 129 (409)
T 3jzl_A 58 DEGRDTLERVYATVF----K----TEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSL 129 (409)
T ss_dssp CHHHHHHHHHHHHHH----T----CSEEEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSSCT
T ss_pred hhHHHHHHHHHHHHh----C----CCcEEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccchhhHH
Confidence 345566777666665 4 234555 88999999999999999999999998 999999854 4
Q ss_pred HHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcC----CCCCcccCCCHHHHHHHHHHHHh--CCCeEEEEccC
Q 012095 197 RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCS----PSNPTGSVYPKNLLDEIARIVAK--HPRLLVLSDEI 270 (471)
Q Consensus 197 ~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~----p~NPtG~~~~~~~l~~i~~l~~~--~~~~~ii~De~ 270 (471)
+..|++++.+++++ ++.+|++++++++++++++|++++ |+||||.+.+ +++|+++|++ | ++++++|++
T Consensus 130 ~~~G~~~~~v~~~~--~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~---l~~I~~la~~~~~-~~~livD~a 203 (409)
T 3jzl_A 130 KDFHIGYSSVPLLE--NGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEK---IKEMIVFVKNINP-EVIVFVDNC 203 (409)
T ss_dssp GGGTCEEEECCCCT--TSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHH---HHHHHHHHHHHCT-TCEEEEECT
T ss_pred HHcCCEEEEeCCCC--CCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCcccc---HHHHHHHHHhhCC-CCEEEEeCC
Confidence 66799999999864 467999999999999999999999 9999998765 9999999999 9 999999999
Q ss_pred CCccccCCCCccccccCCCCCCceEEEecCCcccCccc-hhheeeEcCHHHHHHHHHHHhcc----cCCCChHHHHHHHH
Q 012095 271 YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQSQF----TSGASSISQKAGVA 345 (471)
Q Consensus 271 y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~R~G~v~~~~~~i~~l~~~~~~~----~~~~~~~~q~aa~~ 345 (471)
|..+.+.... .. .+..++++|+||.+|.+| .+.||+++++++++++....... ..++....+.++..
T Consensus 204 ~~~~~~~~~p----~~----~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~ 275 (409)
T 3jzl_A 204 YGEFVEYQEP----PE----VGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYSLLEMYQ 275 (409)
T ss_dssp TCTTTSSCCS----GG----GTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHH
T ss_pred cccccccCCc----cc----cCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhccccccccccccHHHHHHHHH
Confidence 9876543211 11 234599999999998554 34699999999999988754321 12222211233333
Q ss_pred HHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCc----ceEEeEecCCccCCcccCCCCCCCHHHHHHHHH
Q 012095 346 ALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG----AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL 421 (471)
Q Consensus 346 ~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll 421 (471)
.+ ......+++..+++.++.+.|+++ |+++.+..+ ...+.+.+++. ....+|++.|.
T Consensus 276 gl-------~~~~~r~~~~~~~a~~la~~L~~~-g~~v~p~~~~~~~~~i~~i~l~~~-----------~~~~~~~~~L~ 336 (409)
T 3jzl_A 276 GF-------FLAPHVTAQAIKGARFTAAMLAEF-GVEADPVWDAPRTDLIQSVSFHNK-----------EKMVAFAQAIQ 336 (409)
T ss_dssp HH-------HHHHHHHHHHHHHHHHHHHHHHHT-TCEEESCTTSCCSSSCCEEECSCH-----------HHHHHHHHHHH
T ss_pred HH-------hhHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCCccEEEEEEeCCH-----------HHHHHHHHHHH
Confidence 33 334566777888999999999988 677643222 22455566532 14567888876
Q ss_pred Hc
Q 012095 422 DK 423 (471)
Q Consensus 422 ~~ 423 (471)
+.
T Consensus 337 ~~ 338 (409)
T 3jzl_A 337 AA 338 (409)
T ss_dssp HT
T ss_pred hc
Confidence 65
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-23 Score=222.53 Aligned_cols=309 Identities=13% Similarity=0.067 Sum_probs=205.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH-HHHcCCEEEEecCCCC
Q 012095 133 GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM-ARIADATPVILPTRIS 211 (471)
Q Consensus 133 G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~-~~~~G~~~~~v~~~~~ 211 (471)
-..++++.+++++ |. ...+++++|+++++..++.++++|||.|+++.++|.++... ++..|++++.++...+
T Consensus 174 ~i~e~e~~lA~~~----ga---e~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~~ 246 (730)
T 1c4k_A 174 PAVAAEKHAARVY----NA---DKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRN 246 (730)
T ss_dssp HHHHHHHHHHHHT----TC---SEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEEC
T ss_pred HHHHHHHHHHHHH----CC---CcEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCcc
Confidence 3466777777664 52 34688999999999999999999999999999999998887 8899999999987532
Q ss_pred CCCc----CCHHHH-----HhhhccC------C----cEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCC
Q 012095 212 ENFL----LDPKVL-----ESKLTEK------S----RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 272 (471)
Q Consensus 212 ~~~~----ld~e~l-----~~~l~~~------~----~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~ 272 (471)
+|+ +|+++| +++++++ + |++++++| ||+|.+.+ +++|+++|++| +++|++||+|.
T Consensus 247 -~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d---l~~I~~la~~~-g~~livDeAh~ 320 (730)
T 1c4k_A 247 -PYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN---AHEVVKRIGHL-CDYIEFDSAWV 320 (730)
T ss_dssp -TTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC---HHHHHHHHGGG-BSEEEEECTTC
T ss_pred -ccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC---HHHHHHHHHHc-CCeEEEEcccc
Confidence 333 688888 8888765 5 88999999 58999998 89999999999 99999999997
Q ss_pred cc-ccCCCCc-cccccC---CCCCCceEEEecCCcccCccchhhe-eeEcCHHH-------H--HHHHHHH-hcccCCCC
Q 012095 273 HI-IYAPATH-TSFASL---PGMWERTLTVNGFSKAFAMTGWRLG-YIAGPKHF-------V--AACNKIQ-SQFTSGAS 336 (471)
Q Consensus 273 ~~-~~~~~~~-~~~~~~---~~~~~~~i~~~S~SK~~g~~G~R~G-~v~~~~~~-------i--~~l~~~~-~~~~~~~~ 336 (471)
.. .|++... .+.... ..+..+++++.|+||++ +|.+.| +++.+++. + ..+.... .....+++
T Consensus 321 ~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L--~g~~~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~stsp~ 398 (730)
T 1c4k_A 321 GYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQ--AGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPF 398 (730)
T ss_dssp CGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHS--SCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCC
T ss_pred cccccCcccCCcCcccccccCCCCCCEEEEECCCCCC--CCCCCEEEEEecchhhcCcccccCHHHHHHHHHHhCCCCCc
Confidence 43 3432111 111111 22234779999999986 566665 55333221 1 2232221 12233455
Q ss_pred hHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC-CCCCeeeCCCc---------------------------
Q 012095 337 SISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQG--------------------------- 388 (471)
Q Consensus 337 ~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~g~~~~~p~~--------------------------- 388 (471)
.....+..+++..- ..+.-.+..+++.++.+.+++.|.+ ++|+++..|..
T Consensus 399 ~~~iaal~aA~~~l--~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (730)
T 1c4k_A 399 YPMYAALDVNAAMQ--EGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGA 476 (730)
T ss_dssp HHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTC
T ss_pred HHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCccc
Confidence 55544444444421 1112344556677777777888877 67877754421
Q ss_pred ----------c-eE-----EeEecCCc--cCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CH
Q 012095 389 ----------A-FY-----LFIDFSTY--YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SL 448 (471)
Q Consensus 389 ----------g-~~-----~~~~~~~~--~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~ 448 (471)
+ ++ +.+.+|.. ..-.... ...+..++.+.|.++ ||.+.+.. ...+|++++. ++
T Consensus 477 ~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~--~g~~~~~l~~~L~e~-GI~v~~~~----~~~ir~~~s~g~t~ 549 (730)
T 1c4k_A 477 KWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYED--FGVPATIVANYLRDH-GIIPEKSD----LNSILFLMTPAETP 549 (730)
T ss_dssp TTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECS--SCCCHHHHHHHHHHT-TCCCSEEC----SSEEEEECCTTCCH
T ss_pred hhccccccCCcccccCCeEEEEEeCCcccccccccc--cCCCHHHHHHHHHHC-CcEEEECC----CCeEEEEeCCCCCH
Confidence 1 11 34455420 0000000 012678899988876 98875532 4678888876 88
Q ss_pred HHHHHHHHHHHHHHHhh
Q 012095 449 TTLQAAVERIKKGLLTL 465 (471)
Q Consensus 449 e~i~~~~~~l~~~l~~~ 465 (471)
++++.+++.|.++.+++
T Consensus 550 e~i~~Ll~aL~~i~~~~ 566 (730)
T 1c4k_A 550 AKMNNLITQLLQLQRLI 566 (730)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999987765
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=210.94 Aligned_cols=270 Identities=12% Similarity=0.115 Sum_probs=188.2
Q ss_pred HHHHHHHHHHHHc-----CC--CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEE---eCChHHHHHHHHHHhcCCCC
Q 012095 111 VLIAEAGINAIRE-----GF--TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILV---SNGAKQSILQAVLAVCSPGD 180 (471)
Q Consensus 111 ~~v~~a~~~~~~~-----~~--~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~i---t~G~~~al~~~~~~l~~~gd 180 (471)
+.+.+++.++... +. ..| +..|..+|++.+++++ | .+..++ ++|+++++..++.++++|||
T Consensus 47 ~~Vl~a~~~~~~~~~~~~~~~gy~Y-~~~g~~~Le~~lA~l~----g----~e~alv~p~~~sGt~A~~~al~all~pGD 117 (427)
T 3hvy_A 47 LKVLKAFQEERISESHFTNSSGYGY-NDIGRDSLDRVYANIF----N----TESAFVRPHFVNGTHAIGAALFGNLRPND 117 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCT-TCHHHHHHHHHHHHHH----T----CSEEEEETTCCSHHHHHHHHHHHTCCTTC
T ss_pred HHHHHHHHHHHHHHHhcccCcCCCC-CchhHHHHHHHHHHHh----C----CCceEEeCCCCcHHHHHHHHHHHhcCCCC
Confidence 4566666654221 11 234 3345566666666664 4 234466 78889999999999999999
Q ss_pred eEEEcC-CCCCChHH-----------HHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc--cCCcEEEEcC----CCCCcc
Q 012095 181 EVIIPA-PFWVSYPE-----------MARIADATPVILPTRISENFLLDPKVLESKLT--EKSRLLILCS----PSNPTG 242 (471)
Q Consensus 181 ~Vlv~~-p~y~~~~~-----------~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~--~~~~~i~i~~----p~NPtG 242 (471)
+|++++ |.|.++.. .++..|++++.++. +++.+|+++++++++ +++|+|++++ |+||||
T Consensus 118 ~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~---~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg 194 (427)
T 3hvy_A 118 TMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDL---KDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSL 194 (427)
T ss_dssp EEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCC---BTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCC
T ss_pred EEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecC---CCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccc
Confidence 999999 99998873 34568999999997 245799999999998 7899999988 999998
Q ss_pred cCCCHHHHHHHHHHHHh--CCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccc-hhheeeEcCHH
Q 012095 243 SVYPKNLLDEIARIVAK--HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKH 319 (471)
Q Consensus 243 ~~~~~~~l~~i~~l~~~--~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~R~G~v~~~~~ 319 (471)
.+. ++++|+++|++ + ++++++|++|..+.+... + .. .+..++++|+||.+|.+| .+.||++++++
T Consensus 195 ~v~---dl~~i~~ia~~~~~-g~~livD~a~~~~~~~~~---p-~~----~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~ 262 (427)
T 3hvy_A 195 RIA---EIAEIIKSIREVNE-NVIVFVDNCYGEFVEEKE---P-TD----VGADIIAGSLIKNIGGGIATTGGYIAGKEE 262 (427)
T ss_dssp CHH---HHHHHHHHHHHHCS-SSEEEEECTTCTTTSSSC---G-GG----GTCSEEEEETTSGGGTTTCCSCEEEEECHH
T ss_pred cHH---HHHHHHHHHHHhCC-CCEEEEECCccccccCCC---C-cc----cCCeEEEECCcccccccccceEEEEEECHH
Confidence 765 49999999999 8 999999999987654321 1 11 234599999999997444 45699999999
Q ss_pred HHHHHHHHHhcccCC---CChHH-HHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCc----ceE
Q 012095 320 FVAACNKIQSQFTSG---ASSIS-QKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG----AFY 391 (471)
Q Consensus 320 ~i~~l~~~~~~~~~~---~~~~~-q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~----g~~ 391 (471)
+++++.........+ .+++. ..++...+ ......+++..+++.++.+.|+++ |+++.+..+ ...
T Consensus 263 li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl-------~~~~~r~~~~~~~a~~la~~L~~~-g~~V~p~~~~~~~~li 334 (427)
T 3hvy_A 263 YVTQATFRVTVPGIGGECGSTFGVMRSLYEGL-------FMAPHVTIEAVKGAVFCARIMELA-GFDVLPKYNDKRTDII 334 (427)
T ss_dssp HHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHT-TCEEESCTTSCCSSSE
T ss_pred HHHHHHHHhhcCCcccccCCCHHHHHHHHHhH-------hHHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCCCCCceEE
Confidence 999998754322211 11122 22333222 234566777888889999999888 666643322 224
Q ss_pred EeEecCCccCCcccCCCCCCCHHHHHHHHHHc
Q 012095 392 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 423 (471)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~ 423 (471)
+.+.+.+. ....+|++.|...
T Consensus 335 ~~~~l~~~-----------~~~~~f~~~l~~~ 355 (427)
T 3hvy_A 335 QAIKFNDE-----------KKLIDFIKGIQTA 355 (427)
T ss_dssp EEEECSSH-----------HHHHHHHHHHHHT
T ss_pred EEEeCCCH-----------HHHHHHHHHhccc
Confidence 56666432 1456778877553
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9e-24 Score=213.51 Aligned_cols=254 Identities=11% Similarity=0.077 Sum_probs=182.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEE---eCChHHHHHHHHHHhcCCCCeEEEcC-CCCCChHHH----------
Q 012095 130 PNAGTLELRSAICHKLKEENGLSYTPDQILV---SNGAKQSILQAVLAVCSPGDEVIIPA-PFWVSYPEM---------- 195 (471)
Q Consensus 130 ~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~i---t~G~~~al~~~~~~l~~~gd~Vlv~~-p~y~~~~~~---------- 195 (471)
+..|..+|++.+++++ |. +..++ ++|+++++..++.++++|||+|++++ |.|.++...
T Consensus 71 ~~~~~~~Le~~lA~l~----g~----e~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~ 142 (427)
T 3i16_A 71 GDIGRDSLDAVYARVF----NT----ESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMG 142 (427)
T ss_dssp TCHHHHHHHHHHHHHH----TC----SEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSC
T ss_pred CHHHHHHHHHHHHHHh----CC----cceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHH
Confidence 3445566666666664 42 33355 78889999999999999999999999 999988743
Q ss_pred -HHHcCCEEEEecCCCCCCCcCCHHHHHhhhc--cCCcEEEEcC----CCCCcccCCCHHHHHHHHHHHHh--CCCeEEE
Q 012095 196 -ARIADATPVILPTRISENFLLDPKVLESKLT--EKSRLLILCS----PSNPTGSVYPKNLLDEIARIVAK--HPRLLVL 266 (471)
Q Consensus 196 -~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~--~~~~~i~i~~----p~NPtG~~~~~~~l~~i~~l~~~--~~~~~ii 266 (471)
++..|++++.++++.+ +.+|+++++++++ +++|+|++++ |+||||.+. ++++|+++|++ + +++++
T Consensus 143 ~l~~~G~~~~~v~~~~~--g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~---dl~~i~~la~~~~~-g~~li 216 (427)
T 3i16_A 143 SLKEFGINYKQVDLKED--GKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIE---DIKSIVDCVKNIRK-DIICF 216 (427)
T ss_dssp CTGGGTCEEEECCCCTT--SSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHH---HHHHHHHHHHHHCT-TSEEE
T ss_pred HHHHcCCEEEEecCccC--CCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHH---HHHHHHHHHHHhCC-CCEEE
Confidence 4567999999998643 4689999999998 7899999988 999998765 49999999999 9 99999
Q ss_pred EccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccc-hhheeeEcCHHHHHHHHHHHhcccCC--CCh-HHHHH
Q 012095 267 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSG--ASS-ISQKA 342 (471)
Q Consensus 267 ~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~R~G~v~~~~~~i~~l~~~~~~~~~~--~~~-~~q~a 342 (471)
+|++|..+.+... + .. .+..++++|+||.+|.+| .+.||+++++++++++.........+ ..+ +. +
T Consensus 217 vD~a~~~~~~~~~---p-~~----~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~--~ 286 (427)
T 3i16_A 217 VDNCYGEFMDTKE---P-TD----VGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECGSTFG--V 286 (427)
T ss_dssp EECTTTTTSSSSC---G-GG----GTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTT--C
T ss_pred EECCCccccccCC---c-cc----cCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCccCccCCccHH--H
Confidence 9999987654321 1 11 234599999999997544 56799999999999988754322221 111 22 1
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCc----ceEEeEecCCccCCcccCCCCCCCHHHHHH
Q 012095 343 GVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG----AFYLFIDFSTYYGSEAEGFGKIENSESLCR 418 (471)
Q Consensus 343 a~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 418 (471)
+..++.. ...+...+++..+++.++.+.|+++ |+++.+..+ ...+.+.+.+. ....+|++
T Consensus 287 a~~~l~g----l~~~~~r~~~~~~~a~~la~~L~~~-g~~V~p~~~~~~~~~i~~i~l~~~-----------~~~~~f~~ 350 (427)
T 3i16_A 287 VRSMYQG----LFLAPHISMEALKGAILCSRIMELA-GFEVMPKYDEKRSDIIQSIKFNDK-----------DKLIEFCK 350 (427)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHT-TCEEESCTTSCCSSSCEEEECSSH-----------HHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCCCCCccEEEEEEECCH-----------HHHHHHHH
Confidence 2222321 2335667788888999999999988 666653322 22455666432 14567888
Q ss_pred HHHHc
Q 012095 419 YLLDK 423 (471)
Q Consensus 419 ~Ll~~ 423 (471)
.|...
T Consensus 351 ~l~~~ 355 (427)
T 3i16_A 351 GIQTG 355 (427)
T ss_dssp HHHHT
T ss_pred HHhhc
Confidence 87654
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.4e-22 Score=212.30 Aligned_cols=306 Identities=13% Similarity=0.085 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCC
Q 012095 135 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENF 214 (471)
Q Consensus 135 ~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~ 214 (471)
.++++.++++ +|. .+.+++++|+++++..++.++++|||.|+++.|+|.++...+...|++++.++...+ +|
T Consensus 208 ~~~ee~la~l----~G~---d~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~~-~~ 279 (755)
T 2vyc_A 208 GESEKYAARV----FGA---DRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRN-RY 279 (755)
T ss_dssp HHHHHHHHHH----HTC---SEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHHCCEEEEECCCBC-TT
T ss_pred HHHHHHHHHH----hCC---CceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCCCC-cc
Confidence 4455555544 452 356889999999999999999999999999999999999989999999999987643 33
Q ss_pred c----C-----CHHHHHhhhcc--CCc--------EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCcc-
Q 012095 215 L----L-----DPKVLESKLTE--KSR--------LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI- 274 (471)
Q Consensus 215 ~----l-----d~e~l~~~l~~--~~~--------~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~- 274 (471)
+ + |++.|++++++ +++ ++++++| ||||.+.+ +++|+++|++| +++|++||+|...
T Consensus 280 g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d---l~~I~~ia~~~-~~~livDeA~~~~~ 354 (755)
T 2vyc_A 280 GIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKT-SDRLHFDEAWYGYA 354 (755)
T ss_dssp SCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC---HHHHHHHHTTT-CSEEEEECTTCTTG
T ss_pred ccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC---HHHHHHHHHHc-CCEEEEECcCchhc
Confidence 3 4 99999999864 344 8889998 79999998 89999999999 9999999999753
Q ss_pred ccCCC--Ccccccc--CCCCCCceEEEecCCcccCccchh-heeeEcCHH--HH--HHHHHH-HhcccCCCChHHHHHHH
Q 012095 275 IYAPA--THTSFAS--LPGMWERTLTVNGFSKAFAMTGWR-LGYIAGPKH--FV--AACNKI-QSQFTSGASSISQKAGV 344 (471)
Q Consensus 275 ~~~~~--~~~~~~~--~~~~~~~~i~~~S~SK~~g~~G~R-~G~v~~~~~--~i--~~l~~~-~~~~~~~~~~~~q~aa~ 344 (471)
.+++. +...+.. .+....+++++.|+||++ +|.+ .|+++++++ .+ ..+... ......+++.+...+..
T Consensus 355 ~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L--~g~~~g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp~~~~iaal~ 432 (755)
T 2vyc_A 355 RFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLL--NALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASND 432 (755)
T ss_dssp GGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSS--SCCTTCEEEEEECCBTCCCHHHHHHHHHHTSCSSCCHHHHHHHH
T ss_pred ccCcccCCcchhcCCcCCccCCCeEEEECccccc--cCcCCeeeeeecCcccccCHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 23321 1112211 121246788999999986 5666 466666543 11 233332 22223456666555555
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCC---------CeeeCCC----------------------------
Q 012095 345 AALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG---------VKMSEPQ---------------------------- 387 (471)
Q Consensus 345 ~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g---------~~~~~p~---------------------------- 387 (471)
++++.-. ....++..+++.++.+.+++.|.+++| +++..|.
T Consensus 433 aA~~~l~--~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (755)
T 2vyc_A 433 VAVSMMD--GNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCW 510 (755)
T ss_dssp HHHHHHS--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGGGT
T ss_pred HHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhccchhhhh
Confidence 5554211 111233444444444555555544434 3333221
Q ss_pred ---------------cc------eEEeEecCCccCCcccC--CCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe
Q 012095 388 ---------------GA------FYLFIDFSTYYGSEAEG--FGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY 444 (471)
Q Consensus 388 ---------------~g------~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~ 444 (471)
.+ .-+.+.++.. +. .| .....++..+.+.|.+ +||.+... ..+.+|+.+
T Consensus 511 ~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~-~~--~G~~~~~g~~~~~l~~~L~~-~gI~~e~~----~~~~v~~~~ 582 (755)
T 2vyc_A 511 VMHPGESWHGFKDIPDNWSMLDPIKVSILAPGM-GE--DGELEETGVPAALVTAWLGR-HGIVPTRT----TDFQIMFLF 582 (755)
T ss_dssp BCCTTCTTTCCTTCCTTSEEECTTEEEEECSCB-CT--TSSBCSSCCCHHHHHHHHHT-TTCCCSEE----CSSEEEEEC
T ss_pred ccCcccccccccccCCCccccCCeEEEEEcCCC-CC--CCCccccCCcHHHHHHHHHH-CCCEEeec----CCCeEEEEE
Confidence 12 1234444421 10 00 0001256788887654 78876442 356899998
Q ss_pred ec--CHHHHHHHHHHHHHHHHhh
Q 012095 445 AA--SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 445 ~~--~~e~i~~~~~~l~~~l~~~ 465 (471)
+. ++++++.+++.|.++.+.+
T Consensus 583 ~~g~t~~~~~~l~~al~~~~~~~ 605 (755)
T 2vyc_A 583 SMGVTRGKWGTLVNTLCSFKRHY 605 (755)
T ss_dssp CTTCCTTTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhh
Confidence 87 8889999999988886544
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-20 Score=184.17 Aligned_cols=324 Identities=10% Similarity=0.053 Sum_probs=215.8
Q ss_pred CCCCChHHHHHHHHHHHHcCC----CCC--C-CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEE-eCChHHHHHHHHHHhc
Q 012095 105 PDFDTPVLIAEAGINAIREGF----TRY--T-PNAGTLELRSAICHKLKEENGLSYTPDQILV-SNGAKQSILQAVLAVC 176 (471)
Q Consensus 105 ~~~~~p~~v~~a~~~~~~~~~----~~Y--~-~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~i-t~G~~~al~~~~~~l~ 176 (471)
...+.|+.|.+++.+.+.+.. ..+ . -..-..++.+...+.+++.+|.+ ++++|++ |.|+|++++.++..++
T Consensus 20 t~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~-~~~evif~t~~~T~a~n~a~~~l~ 98 (377)
T 3e77_A 20 FQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVP-DNYKVIFLQGGGCGQFSAVPLNLI 98 (377)
T ss_dssp CSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHHHHHHHHHHG
T ss_pred ccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCC-CCCeEEEEcCchHHHHHHHHHhcc
Confidence 345568999999998764311 100 0 01112334444445555556642 3357888 5799999999999998
Q ss_pred CC--CCeEEEcCCCCCCh--HHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHH
Q 012095 177 SP--GDEVIIPAPFWVSY--PEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 252 (471)
Q Consensus 177 ~~--gd~Vlv~~p~y~~~--~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~ 252 (471)
.+ ||+|++..-.+.+. ...++..|..++.++.+. ++..+++.++..+++++++|.+++-.|.||+.+|.
T Consensus 99 ~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~--~~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~pi----- 171 (377)
T 3e77_A 99 GLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLG--SYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDF----- 171 (377)
T ss_dssp GGSTTCEEEECCCSHHHHHHHHHHTTTSEEEECSCCCS--SSCSCCCGGGCCCCTTCSCEEEESEETTTTEECSS-----
T ss_pred CCCCCCeEEEEECCHHHHHHHHHHHHhCCceEEeccCC--CcCCCCChHHhccCCCccEEEEeCccCchheEchh-----
Confidence 65 89987665544332 234556687777777643 34567788888888899999888888899999993
Q ss_pred HHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHH--------
Q 012095 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC-------- 324 (471)
Q Consensus 253 i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l-------- 324 (471)
+|+++ ++++++|.+... +.....+.. ++ +.+.|-.|.+|.+| +|+++.++++++.+
T Consensus 172 ---i~~~~-~~~~~vD~~q~~----g~~~id~~~----~~--~~~~s~~K~~gp~G--~g~l~~~~~~l~~~~~~~p~~~ 235 (377)
T 3e77_A 172 ---IPDVK-GAVLVCDMSSNF----LSKPVDVSK----FG--VIFAGAQKNVGSAG--VTVVIVRDDLLGFALRECPSVL 235 (377)
T ss_dssp ---CCCCT-TCCEEEECTTTT----TSSCCCGGG----CS--EEEEEGGGTTSCTT--CEEEEEETTSCSCCCTTSCGGG
T ss_pred ---hhccC-CCEEEEEccccc----CCCCCchhh----cC--EEEEecccccCCCc--cEEEEEcHHHHhhccCCCCchh
Confidence 36778 999999999875 222222222 23 46788899998777 78888776653221
Q ss_pred --HHH-H-hcccCCCChHHHHHHHHHHhccCCChH-HHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC----CcceEEeEe
Q 012095 325 --NKI-Q-SQFTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMSEP----QGAFYLFID 395 (471)
Q Consensus 325 --~~~-~-~~~~~~~~~~~q~aa~~~L~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p----~~g~~~~~~ 395 (471)
... . .....+++....+++.++|+.- .+. .++.+.++.++.++++++.|++++|+.+... .++..+.+.
T Consensus 236 ~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l--~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~ 313 (377)
T 3e77_A 236 EYKVQAGNSSLYNTPPCFSIYVMGLVLEWI--KNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFR 313 (377)
T ss_dssp CHHHHHTTTTCSSCCCHHHHHHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEE
T ss_pred hHHHHhhcCCCCCCchHHHHHHHHHHHHHH--HHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEE
Confidence 111 1 1123356676777777777641 123 4788899999999999999999988875321 234446667
Q ss_pred cCCccCCcccCCCCCCC-HHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012095 396 FSTYYGSEAEGFGKIEN-SESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 396 ~~~~~~~~~~~~~~~~~-~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~ 465 (471)
+++.-.. .+ ...+...|.+ +||.+.+|.. ..+.+|+|+.. ++++++.+++.|++++++.
T Consensus 314 ~~~~~~~--------~~~~~~~l~~l~~-~Gi~~~~g~~--~~g~iRiS~~~~~t~edId~l~~al~~~~~~~ 375 (377)
T 3e77_A 314 IGNAKGD--------DALEKRFLDKALE-LNMLSLKGHR--SVGGIRASLYNAVTIEDVQKLAAFMKKFLEMH 375 (377)
T ss_dssp ESSTTCC--------HHHHHHHHHHHHH-TTEESCBCCT--TTCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCc--------hhHHHHHHHHHHH-CCcEEeCCCC--cCCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 7642000 00 1356666655 5999988753 34679999987 8999999999999998763
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.6e-20 Score=186.39 Aligned_cols=341 Identities=15% Similarity=0.133 Sum_probs=211.5
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
.+|+.+||+..|. ..++. +|.+.+|+.+++.++.+...+..-..+|.+.|+++ .+ ..+.+.++++++++.
T Consensus 84 ~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~~~~~~~~~~~~lae~l~~~----~p---~~~~v~f~~SGsEA~ 156 (454)
T 4ao9_A 84 ADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGINLTGHNLLEGRLARLICER----FP---QIEQLRFTNSGTEAN 156 (454)
T ss_dssp TTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCSCCCSEESSHHHHHHHHHHH----ST---TCSEEEEESSHHHHH
T ss_pred CCCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCCCccCCcHHHHHHHHHHHHh----CC---CCCEEEEeCchHHHH
Confidence 3688899998775 34444 78999999999987544333444444555555554 33 457999999999999
Q ss_pred HHHHHHhcC--CCCeEEEcCCCCCChHHHHH------HcCCEEEEecCCCCCCCcCCHHHHHhhhcc---CCcEEEEcCC
Q 012095 169 LQAVLAVCS--PGDEVIIPAPFWVSYPEMAR------IADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSP 237 (471)
Q Consensus 169 ~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~------~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~---~~~~i~i~~p 237 (471)
..+++.... ..+.|+..+.+|.+....+. ........+|. -|++.+++.+.+ ++.+|++...
T Consensus 157 e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~-------nd~~~l~~~l~~~~~~iAavIvEPv 229 (454)
T 4ao9_A 157 LMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPY-------NDAQTARAQIERHGPEIAVVLVEPM 229 (454)
T ss_dssp HHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECT-------TCHHHHHHHHHHTGGGEEEEEECSE
T ss_pred HHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCC-------chHHHHHHHHhhcCCceEEEEeccc
Confidence 998887532 23678888888887442211 11123333332 288889888853 3445555433
Q ss_pred CCCcc-cCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEc
Q 012095 238 SNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 316 (471)
Q Consensus 238 ~NPtG-~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~ 316 (471)
+...| ...+++.+++|.++|++| |+++|.||++.. ..+.........+.+ | +-+++|.+| .|+.+|.+++
T Consensus 230 ~g~~G~~~p~~~fL~~lr~lc~~~-g~lLI~DEV~tG-R~G~~~a~e~~gv~P--D----i~t~gK~lg-gG~Piga~~~ 300 (454)
T 4ao9_A 230 QGASGCIPGQPDFLQALRESATQV-GALLVFDEVMTS-RLAPHGLANKLGIRS--D----LTTLGKYIG-GGMSFGAFGG 300 (454)
T ss_dssp ESTTTCEECCHHHHHHHHHHHHHH-TCEEEEECTTGG-GGSTTCHHHHHTCCC--S----EEEEEGGGG-TTSSCEEEEE
T ss_pred cCCCCccCCchhhHHHHHHHHhhc-CCEEEEECCCcC-CCccccchhccCCCC--c----EEEeccccC-CCCcceeeee
Confidence 54466 566788999999999999 999999999974 222111111122222 2 446889998 8999999999
Q ss_pred CHHHHHHHHHH----HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCe-eeCCCcceE
Q 012095 317 PKHFVAACNKI----QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFY 391 (471)
Q Consensus 317 ~~~~i~~l~~~----~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~-~~~p~~g~~ 391 (471)
.+++++.+... ....+++.++++..++.+.|+.-.. ++.++++.+.-+..++.|.+.+.+. ++. -+...|.|
T Consensus 301 ~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~-~~~~~~~~~~g~~l~~~L~~l~~~~-~~~~~vrg~G~m- 377 (454)
T 4ao9_A 301 RADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFT-PEAAGALAERGEALRARLNALCANE-GVAMQFTGIGSL- 377 (454)
T ss_dssp CHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHHHHHHHH-TBSCEEEEETTE-
T ss_pred HHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHhhC-CCCEEEeeeceE-
Confidence 99999877532 1234667899999999999875321 3333333333333333333333333 221 12233444
Q ss_pred EeEecCCccCCcccCCCCCCC---HHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012095 392 LFIDFSTYYGSEAEGFGKIEN---SESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~---~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~~~~ 466 (471)
+.+.+.+........... .+ ...++..|+++ ||++.|.. ++.++...++++|++++++|++++.++.
T Consensus 378 ~gi~f~~~~~~~~~~~~~-~d~~~~~~~~~~ll~~-Gv~~~p~~------~~~~s~~~T~~dId~~l~al~~~l~~~~ 447 (454)
T 4ao9_A 378 MNAHFVQGDVRSSEDLAA-VDGRLRQLLFFHLLNE-DIYSSPRG------FVVLSLPLTDADIDRYVAAIGSFIGGHG 447 (454)
T ss_dssp EEEESCCSCCCSGGGGTT-CCHHHHHHHHHHHHHT-TEECCTTC------EEECCTTCCHHHHHHHHHHHHHHHHHSG
T ss_pred EEEEEecCCCCCHHHHHh-hhHHHHHHHHHHHHHC-CEEEcCCC------CEEEeCCCCHHHHHHHHHHHHHHHHhcc
Confidence 333332110000000000 12 24566778876 99988743 4566666799999999999999998754
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-19 Score=189.80 Aligned_cols=303 Identities=13% Similarity=0.156 Sum_probs=188.6
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCC
Q 012095 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 213 (471)
Q Consensus 134 ~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~ 213 (471)
..++++.+++++ | ....+++++|++.++..++.++++|||.|+++.++|.++...+...|++++.++...+ .
T Consensus 197 i~eaE~~lA~~f----G---a~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~~-~ 268 (715)
T 3n75_A 197 HKEAEQYIARVF----N---ADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRN-A 268 (715)
T ss_dssp HHHHHHHHHHHH----T---CSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHSCCEEEEECCCBC-T
T ss_pred HHHHHHHHHHHh----C---CCCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecccc-c
Confidence 567777777775 4 3456778899899999999999999999999999999999999999999999987643 4
Q ss_pred CcC---------CHHHHHhhhcc--CCc---EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccc-cCC
Q 012095 214 FLL---------DPKVLESKLTE--KSR---LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII-YAP 278 (471)
Q Consensus 214 ~~l---------d~e~l~~~l~~--~~~---~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~-~~~ 278 (471)
|++ |++.|++++++ ++| ++++++| ||+|.+++ +++|+++|+++ + |++||+|.... |++
T Consensus 269 ~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~d---l~~I~ela~~~-~--livDEAH~~~~~f~~ 341 (715)
T 3n75_A 269 YGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYN---TDFIKKTLDVK-S--IHFDSAWVPYTNFSP 341 (715)
T ss_dssp TCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEEC---HHHHHHHCCCS-E--EEEECTTCTTGGGSG
T ss_pred cccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCC---HHHHHHHhCcC-c--EEEccccccccccCC
Confidence 554 89999999964 334 8999999 99999999 77888888766 3 78999998653 432
Q ss_pred CCccccccCCC--CCCce-EEEecCCcccCccch-hheeeEcCHHH-HHHHHHHHhc-ccCCCChHHHHHHHHHHhccCC
Q 012095 279 ATHTSFASLPG--MWERT-LTVNGFSKAFAMTGW-RLGYIAGPKHF-VAACNKIQSQ-FTSGASSISQKAGVAALGLGYA 352 (471)
Q Consensus 279 ~~~~~~~~~~~--~~~~~-i~~~S~SK~~g~~G~-R~G~v~~~~~~-i~~l~~~~~~-~~~~~~~~~q~aa~~~L~~~~~ 352 (471)
.. +....+.. ..+.+ +++.|++|+++ |+ -.||++++.++ .+.+.+.... .+.+++.+..+++.++++.-
T Consensus 342 ~~-~~~~al~~g~~aD~vii~~~S~hKtL~--gltqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~-- 416 (715)
T 3n75_A 342 IY-EGKCGMSGGRVEGKVIYETQSTHKLLA--AFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMM-- 416 (715)
T ss_dssp GG-TTSSTTSSSCCTTCEEEEEECHHHHSS--CCTTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHH--
T ss_pred cc-ccccccccCcCCCEEEEEEeccccccc--CCCCeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH--
Confidence 11 11111211 12443 66999999975 43 24788876543 2233333222 34456666665555555421
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcCCC----C--CeeeCCC-----------------------cce-E-----EeEecC
Q 012095 353 GGEVVSKMVKAFRERRDFLVKSFGELE----G--VKMSEPQ-----------------------GAF-Y-----LFIDFS 397 (471)
Q Consensus 353 ~~~~~~~~~~~~~~~r~~l~~~L~~~~----g--~~~~~p~-----------------------~g~-~-----~~~~~~ 397 (471)
....-.++++++.++.+.+++.|++++ | +.+..+. .++ + +.+.++
T Consensus 417 ~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i~~~ 496 (715)
T 3n75_A 417 KGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTP 496 (715)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTEEEEECS
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCeEEEEEcC
Confidence 011223344555555555555555442 2 2222221 111 1 233333
Q ss_pred CccCCcccCC--CCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEE--EEeecCHHHHHHHHHHHHHHHHh
Q 012095 398 TYYGSEAEGF--GKIENSESLCRYLLDKAQVALVPGDAFGDDTCIR--ISYAASLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 398 ~~~~~~~~~~--~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iR--is~~~~~e~i~~~~~~l~~~l~~ 464 (471)
.. + ..|. ....++..+.+.|. ++||.+--... .+|= +|++.++++++.+++.|.++-+.
T Consensus 497 ~~-~--~~G~~~~~Gi~g~~~~~~L~-~~~I~~E~~d~----~~vl~l~s~g~~~~~~~~L~~aL~~~~~~ 559 (715)
T 3n75_A 497 GM-E--KDGTMSDFGIPASIVAKYLD-EHGIVVEKTGP----YNLLFLFSIGIDKTKALSLLRALTDFKRA 559 (715)
T ss_dssp CB-C--TTSCBCSSCCCHHHHHHHHH-HTTCCCSEEET----TEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CC-C--CCCccccCCCcHHHHHHHHH-HCCCEEEecCC----CcEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 21 0 0010 00125667777775 45887654332 2333 34445888888888888776543
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-18 Score=172.31 Aligned_cols=324 Identities=14% Similarity=0.140 Sum_probs=213.9
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcC----CCCCC-CCCC--CHHHHHHHHHHHHHHhCCCCCCCcEEE-eCChHHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREG----FTRYT-PNAG--TLELRSAICHKLKEENGLSYTPDQILV-SNGAKQS 167 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~----~~~Y~-~~~G--~~~lr~~ia~~~~~~~g~~~~~~~i~i-t~G~~~a 167 (471)
+++.|+.|-. +.|+.|++++.+.+.+. ...|. ...+ ..++.+...+.+++.+|.+ ++++|++ |.|+|++
T Consensus 5 ~~~~f~pgpt--~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~-~~~~v~f~t~~~T~a 81 (361)
T 3m5u_A 5 RKINFSAGPS--TLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELN-DDYEVLFLQGGASLQ 81 (361)
T ss_dssp CCEECCSSSC--CCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHH
T ss_pred ceEeecCCCC--CCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCC-CCceEEEEcCcHHHH
Confidence 4566665543 35788999988865421 11010 0011 1234444444555556642 3458887 9999999
Q ss_pred HHHHHHHhcCCCCeEE-EcCCCCC-ChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCC
Q 012095 168 ILQAVLAVCSPGDEVI-IPAPFWV-SYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245 (471)
Q Consensus 168 l~~~~~~l~~~gd~Vl-v~~p~y~-~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~ 245 (471)
++.++..++ +||+++ +....|. .+...++..|+++..++.+.++.+.++++. + +++++++|.+++..|.||..+
T Consensus 82 ~n~~~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~--~-l~~~t~lv~~~~~e~~tG~~~ 157 (361)
T 3m5u_A 82 FAMIPMNLA-LNGVCEYANTGVWTKKAIKEAQILGVNVKTVASSEESNFDHIPRV--E-FSDNADYAYICSNNTIYGTQY 157 (361)
T ss_dssp HHHHHHHHC-CSSCEEEEECSHHHHHHHHHHHHTTCCEEEEEECTTTTSCSCCCC--C-CCTTSSEEEEESEETTTTEEC
T ss_pred HHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHcCCceEEEecccCcCCCcCChh--h-cCCCCCEEEEeCCCCCcceeC
Confidence 999999998 888653 3232332 123456677999999998764433346666 4 888999999988888899987
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHH
Q 012095 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 325 (471)
Q Consensus 246 ~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~ 325 (471)
+. ++ ++ ++++++|.+... +.....+. +-.+++.|..|.+|.+| +|+++.++++++.+.
T Consensus 158 ~~--------i~-~~-~~~~~vD~~q~~----g~~~id~~------~~d~~~~s~~K~~gp~G--~g~l~~~~~~~~~~~ 215 (361)
T 3m5u_A 158 QN--------YP-KT-KTPLIVDASSDF----FSRKVDFS------NIALFYGGVQKNAGISG--LSCIFIRKDMLERSK 215 (361)
T ss_dssp SS--------CC-CC-SSCEEEECGGGT----TSSCCCCT------TEEEEEEETTTTSSCTT--CEEEEEEHHHHHHHH
T ss_pred Cc--------cc-cc-CCEEEEEccccc----CCCCCCcc------cCCEEEEechhccCCCc--cEEEEEcHHHHhhhc
Confidence 72 23 36 899999998875 22222221 12377889999998666 899999998887664
Q ss_pred H-----------H--HhcccCCCChHHHHHHHHHHhccCCChH--HHHHHHHHHHHHHHHHHHHhcCCCCC-eeeC-C--
Q 012095 326 K-----------I--QSQFTSGASSISQKAGVAALGLGYAGGE--VVSKMVKAFRERRDFLVKSFGELEGV-KMSE-P-- 386 (471)
Q Consensus 326 ~-----------~--~~~~~~~~~~~~q~aa~~~L~~~~~~~~--~~~~~~~~~~~~r~~l~~~L~~~~g~-~~~~-p-- 386 (471)
. . ......+++....+++.++|+. ..+ .++.+.++.++.++++++.|++++|+ .... +
T Consensus 216 ~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~---l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~ 292 (361)
T 3m5u_A 216 NKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDW---LLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKD 292 (361)
T ss_dssp TCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHH---HHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGG
T ss_pred CCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHH---HHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHH
Confidence 2 1 1112234677777777777764 122 37888899999999999999999766 4432 2
Q ss_pred CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012095 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 387 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~ 464 (471)
.....+.+.+++..+ -..++...|. +.||.+.+|.. ..+.+|+|+.. ++++++.+++.|+++.++
T Consensus 293 rs~~ivsf~~~~~~~----------~~~~~~~~L~-~~gI~~~~g~~--~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 293 RSLMNVSFNIAKNKD----------LEPLFVKEAE-EAGMIGLKGHR--ILGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp BCSSEEEEEESSCTT----------HHHHHHHHHH-HTTEECCBCCT--TTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCchh----------hhHHHHHHHH-HCCCEEecCCC--ccCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 223346667764100 1246776654 55999988753 23579999987 899999999999998875
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=174.04 Aligned_cols=311 Identities=9% Similarity=0.063 Sum_probs=204.5
Q ss_pred ChHHHHHHHHHHHHcC----C-----CCCCC--CCCCHHHHHHHHHHHHHHhCCCCCCCcEEE-eCChHHHHHHHHHHhc
Q 012095 109 TPVLIAEAGINAIREG----F-----TRYTP--NAGTLELRSAICHKLKEENGLSYTPDQILV-SNGAKQSILQAVLAVC 176 (471)
Q Consensus 109 ~p~~v~~a~~~~~~~~----~-----~~Y~~--~~G~~~lr~~ia~~~~~~~g~~~~~~~i~i-t~G~~~al~~~~~~l~ 176 (471)
.|+.|++++.+.+.+. . .+.++ ..-..+.|+.+++++ |.+ ++++|++ |.|+|++++.++..++
T Consensus 38 ~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll----~~~-~~~evif~t~~~T~a~n~ai~~l~ 112 (386)
T 3qm2_A 38 LPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLL----NIP-SNYKVLFCHGGGRGQFAGVPLNLL 112 (386)
T ss_dssp CCHHHHHHHTCC-----------------------CCHHHHHHHHHHH----TCC-TTEEEEEEESCTTHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHh----CCC-CCceEEEEcCCchHHHHHHHHhcc
Confidence 5788888887655321 0 01111 234567777777776 421 2357888 6899999999999999
Q ss_pred CCCCeEEEcCCCCCC--hHHHHHHcCCEEEEecCC-CCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccC-CCHHHHHH
Q 012095 177 SPGDEVIIPAPFWVS--YPEMARIADATPVILPTR-ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV-YPKNLLDE 252 (471)
Q Consensus 177 ~~gd~Vlv~~p~y~~--~~~~~~~~G~~~~~v~~~-~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~-~~~~~l~~ 252 (471)
.+||+|++..-++.+ +...++..| ++..++.+ .+.++.+++++++.++++++++|.+++-.|.||+. .+ +++
T Consensus 113 ~~gd~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~et~tG~~i~p---i~~ 188 (386)
T 3qm2_A 113 GDKTTADYVDAGYWAASAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETIDGIAIDE---TPD 188 (386)
T ss_dssp TTCCEEEEEESSHHHHHHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCTTCSCEEECSEETTTTEECCC---CCC
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCCCCcEEEEECCcCCcCEecCc---hhh
Confidence 999997654332222 223456678 89889876 12344468888888899999999888888889996 77 555
Q ss_pred HHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHH--------
Q 012095 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC-------- 324 (471)
Q Consensus 253 i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l-------- 324 (471)
|. + ++++++|.+... +.....+..+ + +.+.|-.|.+|.+| +|+++.++++++.+
T Consensus 189 i~-----~-g~~~~vDa~qs~----g~~pidv~~~----~--~~~~s~hK~lGP~G--~g~l~v~~~~~~~~~~~~p~~~ 250 (386)
T 3qm2_A 189 FG-----P-EVVVTADFSSTI----LSAPLDVSRY----G--VIYAGAQKNIGPAG--LTLVIVREDLLGKAHESCPSIL 250 (386)
T ss_dssp CC-----T-TCCEEEECTTTT----TSSCCCGGGC----S--EEEEETTTTTCCTT--EEEEEEEGGGCSCCCTTSCGGG
T ss_pred hc-----C-CCEEEEEccccc----CCCCCCcccc----C--EEEEecccccCCCc--cEEEEECHHHHhhhcccCCcHH
Confidence 53 6 899999999875 2222223222 3 45688899998666 89988877653211
Q ss_pred --HHH-H-hcccCCCChHHHHHHHHHHhccCCChH--HHHHHHHHHHHHHHHHHHHhcCCCCC-eee-CC--CcceEEeE
Q 012095 325 --NKI-Q-SQFTSGASSISQKAGVAALGLGYAGGE--VVSKMVKAFRERRDFLVKSFGELEGV-KMS-EP--QGAFYLFI 394 (471)
Q Consensus 325 --~~~-~-~~~~~~~~~~~q~aa~~~L~~~~~~~~--~~~~~~~~~~~~r~~l~~~L~~~~g~-~~~-~p--~~g~~~~~ 394 (471)
... . .....+++....+++.++|+. ..+ .++.+.++.++.++++++.|+++ |+ ... .+ .+...+.+
T Consensus 251 ~~~~~~~~~~~~gTp~v~~i~~l~~Al~~---~~~~gG~~~i~~~~~~l~~~l~~~l~~~-~~~~~~~~~~~rs~~iv~f 326 (386)
T 3qm2_A 251 DYTVLNDNDSMFNTPPTFAWYLSGLVFKW---LKAQGGVAAMHKINQQKAELLYGVIDNS-DFYRNDVAQANRSRMNVPF 326 (386)
T ss_dssp CHHHHHHC-------CCSHHHHHHHHHHH---HHHHTHHHHHHHHHHHHHHHHHHHHHTC-SSEECCBCGGGBCSSEEEE
T ss_pred HHHHHhhcCCCCCCCcHHHHHHHHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCHHHcCceEEEE
Confidence 111 1 111224566666677777764 233 47888899999999999999988 65 221 11 23344666
Q ss_pred ecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012095 395 DFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~ 464 (471)
.+++. + ...++...|. ++||.+.+|... .+.+|+|+.. ++++++++++.|+++.++
T Consensus 327 ~~~~~-~----------~~~~~~~~L~-~~gI~~~~g~~~--~~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 327 QLADN-T----------LDKVFLEESF-AAGLHALKGHRV--VGGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp EESSG-G----------GHHHHHHHHH-HTTEECCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ECCCc-c----------ccHHHHHHHH-HCCCEEeCCCCC--cCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 77641 0 1256777654 559999887533 3569999987 899999999999998875
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-16 Score=160.76 Aligned_cols=351 Identities=12% Similarity=0.070 Sum_probs=212.3
Q ss_pred cCCCeEEcCCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCCC-CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 93 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAG-TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 93 ~g~~~i~l~~g~~~--~~~-p~~v~~a~~~~~~~~~~~Y~~~~G-~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
.|+.+||+..|... ++. ++.+.+|+.+++.+.. .|....+ ..+....+++.+.+..+. ..+.+++++++++|.
T Consensus 65 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~-~~~~~~~~~~~~~~~lAe~L~~~~p~--~~~~v~f~~sGsEA~ 141 (473)
T 4e3q_A 65 NGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFP-GYHAFFGRMSDQTVMLSEKLVEVSPF--DSGRVFYTNSGSEAN 141 (473)
T ss_dssp TCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCC-CCCCCTTEEEHHHHHHHHHHHHHSSC--SSCEEEEESSHHHHH
T ss_pred CCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcc-cccccccccCHHHHHHHHHHHhhCCC--CccEEEEeCchHHHH
Confidence 68889999888743 343 7899999999887632 2322222 345556677777665542 346999999999999
Q ss_pred HHHHHHhc-------CCC-CeEEEcCCCCCChHHHHHHcCC------------EEEEecCCCC---CCCcC--------C
Q 012095 169 LQAVLAVC-------SPG-DEVIIPAPFWVSYPEMARIADA------------TPVILPTRIS---ENFLL--------D 217 (471)
Q Consensus 169 ~~~~~~l~-------~~g-d~Vlv~~p~y~~~~~~~~~~G~------------~~~~v~~~~~---~~~~l--------d 217 (471)
+.+++... .++ ..|+....+|++....+..... ..+.++.... ....- .
T Consensus 142 e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 221 (473)
T 4e3q_A 142 DTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARL 221 (473)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHHHHH
Confidence 99988642 244 5688888888875443322221 1222222110 00000 1
Q ss_pred HHHHHhhhc----cCCcEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCc-cccccCCCCC
Q 012095 218 PKVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMW 291 (471)
Q Consensus 218 ~e~l~~~l~----~~~~~i~i~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~~~~ 291 (471)
.+++++.+. ++..+|++...+.-.|. ..+++.+++|.++|++| |+++|.||+...|.-.|... .....+.+
T Consensus 222 ~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~-gilLI~DEV~tGfGRtG~~fa~e~~gv~P-- 298 (473)
T 4e3q_A 222 ARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKY-DIPVISDEVICGFGRTGNTWGCVTYDFTP-- 298 (473)
T ss_dssp HHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT-TCCEEEECTTTSSSTTSSSCHHHHTTCCC--
T ss_pred HHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhccc-ceEEeccCccccCCcccchhHHHhcCCCC--
Confidence 234444442 12344444433544564 56788999999999999 99999999999874333211 11112222
Q ss_pred CceEEEecCCcccCccc-hhheeeEcCHHHHHHHHHHH-------hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHH
Q 012095 292 ERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQ-------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (471)
Q Consensus 292 ~~~i~~~S~SK~~g~~G-~R~G~v~~~~~~i~~l~~~~-------~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~ 363 (471)
| +-+++|.++ .| +.+|.+++++++.+.+.... ...+++.++++.+++.+.|+.- + -+.+.++
T Consensus 299 D----i~t~~K~l~-gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i---~--~~~l~~~ 368 (473)
T 4e3q_A 299 D----AIISSKNLT-AGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVV---M--NEGLAEN 368 (473)
T ss_dssp S----EEEECGGGG-TTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHH---H--HSSHHHH
T ss_pred C----hHHhccccc-CCCCCcccccccHHHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhh---c--cccHHHH
Confidence 2 345789998 66 89999999999999886532 2356778999999998888741 1 1122223
Q ss_pred HHHHHHHHHHHhc---CCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcE
Q 012095 364 FRERRDFLVKSFG---ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 440 (471)
Q Consensus 364 ~~~~r~~l~~~L~---~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~i 440 (471)
.++.-+++.+.|+ +.+.+.-+... |+++-+.+-........-.........+.+.++++ ||++.|.. +.+
T Consensus 369 ~~~~g~~l~~~L~~l~~~~~v~~vRG~-Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~-Gll~~~~g-----~~i 441 (473)
T 4e3q_A 369 VRRLAPRFEERLKHIAERPNIGEYRGI-GFMWALEAVKDKASKTPFDGNLSVSERIANTCTDL-GLICRPLG-----QSV 441 (473)
T ss_dssp HHHHHHHHHHHHHHHTTSTTEEEEEEE-TTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECEEET-----TEE
T ss_pred HHHHHHHHHHHHHHHhcCCCeeEEeec-ceEEEEEEecCccccccccccHHHHHHHHHHHHHC-CcEEEecC-----CEE
Confidence 3333334444433 34454333333 34444554321110000000001245678888876 99988742 578
Q ss_pred EEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012095 441 RISYAA--SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 441 Ris~~~--~~e~i~~~~~~l~~~l~~~~ 466 (471)
|++... +++++++++++|.++++++.
T Consensus 442 ~l~PPL~it~~eid~~~~~l~~al~~v~ 469 (473)
T 4e3q_A 442 VLCPPFILTEAQMDEMFDKLEKALDKVF 469 (473)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 887654 99999999999999998754
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-16 Score=163.12 Aligned_cols=351 Identities=14% Similarity=0.116 Sum_probs=211.4
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+.+||+..|. ..++. ++.+.+|+.+++.+..+.. ......+....+++.+.+....+ ..+.+++++++++|.
T Consensus 61 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~-~~~~~~~~~~~lae~L~~~~p~~-~~~~v~f~~sGsEA~ 138 (456)
T 4atq_A 61 VDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHTC-FMVTPYEGYVAVTEQLNRLTPGD-HAKRTVLFNSGAEAV 138 (456)
T ss_dssp TTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCT-TTTSCCHHHHHHHHHHHHHSSCS-SCEEEEEESSHHHHH
T ss_pred CCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccCcc-cCccCcHHHHHHHHHHHHhCCCC-CCcEEEEeCChHHHH
Confidence 3688899998884 55554 7899999999887632110 11111234445555555543311 245789999999999
Q ss_pred HHHHHHhc--CCCCeEEEcCCCCCChHHHHHHc-C-------------CEEEEecCCCC----CCCcCCHHHHHhhh---
Q 012095 169 LQAVLAVC--SPGDEVIIPAPFWVSYPEMARIA-D-------------ATPVILPTRIS----ENFLLDPKVLESKL--- 225 (471)
Q Consensus 169 ~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-G-------------~~~~~v~~~~~----~~~~ld~e~l~~~l--- 225 (471)
+.+++... ...+.|+..+.+|++....+... + ..+..+|.... ....-+.+.+++.+
T Consensus 139 e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (456)
T 4atq_A 139 ENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMI 218 (456)
T ss_dssp HHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHH
Confidence 99888642 23478888899998765443322 1 12344443210 00011233333322
Q ss_pred ----cc-CCcEEEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEec
Q 012095 226 ----TE-KSRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 299 (471)
Q Consensus 226 ----~~-~~~~i~i~~p~NPtG-~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S 299 (471)
.. +..+|++...+.-.| ...+++.+++|.++|++| |+++|.||+...+.-.|.. .......-..| +-+
T Consensus 219 e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~-gillI~DEV~tG~GRtG~~-~a~e~~gv~PD----ivt 292 (456)
T 4atq_A 219 EKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEK-GIVFIADEVQSGFCRTGEW-FAVDHEGVVPD----IIT 292 (456)
T ss_dssp HHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGGGTTCCCS----EEE
T ss_pred HHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhc-CCceEecccccccCCcccc-ccccccCCCCc----hhh
Confidence 22 344555543354456 456788999999999999 9999999999986433321 11111111112 345
Q ss_pred CCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC--
Q 012095 300 FSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-- 377 (471)
Q Consensus 300 ~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-- 377 (471)
|+|.+| .|+.+|.+++++++.+.+.......+++.++++.+++.+.|+.- ++ +.+.++.++.-+++.+.|++
T Consensus 293 ~gK~lg-gg~P~~av~~~~~i~~~~~~~~~~~Tf~gnpla~aaala~L~~i---~~--~~l~~~~~~~g~~l~~~L~~l~ 366 (456)
T 4atq_A 293 MAKGIA-GGLPLSAITGRADLLDAVHPGGLGGTYGGNPVACAAALAAIDTM---EQ--HDLNGRARHIEELALGKLRELA 366 (456)
T ss_dssp ECGGGG-TTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHH---HH--TTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccc-CcCCceeeEecHHHHhcccccCCCCCCCCChHHHHhhHHHHHHH---hh--ccHHHHHHHHHHHHHHHHHHHH
Confidence 789998 89999999999999988766555678889999999999988741 11 11222223333333333322
Q ss_pred --CC-----CCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CH
Q 012095 378 --LE-----GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SL 448 (471)
Q Consensus 378 --~~-----g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~ 448 (471)
++ -+.-+... |+++-+.+.+..... . .......+.+.++++ ||++.++..+ .+.|||.... ++
T Consensus 367 ~~~~~~~~~~v~~VRG~-Gl~~giel~~~~~~~-~---~~~~~~~v~~~~~~~-Gvl~~~~g~~--~~~irl~PpL~it~ 438 (456)
T 4atq_A 367 AELSAGGGSVVGDIRGR-GAMLAIELVQPGSKE-P---NAELTKAVAAACLKE-GVIILTCGTY--GNVIRLLPPLVISD 438 (456)
T ss_dssp HHCC-----CEEEEEEE-TTEEEEEEBCTTSCC-B---CHHHHHHHHHHHHHT-TEECEEECTT--SCEEEECCCTTCCH
T ss_pred HhcccccCCceEEeeec-ceEEEEEEecCCCCC-c---CHHHHHHHHHHHHHC-CCEEEecCCC--CCEEEEECCCCCCH
Confidence 21 11111222 444555653221000 0 000245677888876 9998875432 3579998764 99
Q ss_pred HHHHHHHHHHHHHHHh
Q 012095 449 TTLQAAVERIKKGLLT 464 (471)
Q Consensus 449 e~i~~~~~~l~~~l~~ 464 (471)
+++++++++|+++++.
T Consensus 439 ~~id~~l~~l~~al~a 454 (456)
T 4atq_A 439 ELLIDGLEVLAAAIKA 454 (456)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999874
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=8.6e-17 Score=174.91 Aligned_cols=350 Identities=13% Similarity=0.067 Sum_probs=211.9
Q ss_pred CeEEcCCCC--CCCCC--hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHH
Q 012095 96 SVIRLAAGE--PDFDT--PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 171 (471)
Q Consensus 96 ~~i~l~~g~--~~~~~--p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~ 171 (471)
++||+..|. ..++. ++.+.+|+.+++.+-. ++.......+....+++.+.+..+.. ..+.++++++++++++.+
T Consensus 381 ~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~-h~~~~~~~~~~~~~Lae~L~~~~p~~-~l~~vff~~SGSeA~E~A 458 (831)
T 4a0g_A 381 QQFDACASWWTQGPDPTFQAELAREMGYTAARFG-HVMFPENVYEPALKCAELLLDGVGKG-WASRVYFSDNGSTAIEIA 458 (831)
T ss_dssp EEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHS-SCCCTTEECHHHHHHHHHHHHTTTTT-TCCEEEEESSHHHHHHHH
T ss_pred heeeecccHhhcCCCCCCCHHHHHHHHHHHhhcc-cccccccCCHHHHHHHHHHHHhCCCC-CCCEEEECCChhHHHHHH
Confidence 688888774 34443 6889999999887622 12111223455567777776654421 136899999999999988
Q ss_pred HHHhc-----CC-----------C-CeEEEcCCCCCChH-HHHHHcCCE---------------E-------------EE
Q 012095 172 VLAVC-----SP-----------G-DEVIIPAPFWVSYP-EMARIADAT---------------P-------------VI 205 (471)
Q Consensus 172 ~~~l~-----~~-----------g-d~Vlv~~p~y~~~~-~~~~~~G~~---------------~-------------~~ 205 (471)
++... .. + ..|+..+.+|++-. ..+...|.. + ..
T Consensus 459 lK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 538 (831)
T 4a0g_A 459 LKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWN 538 (831)
T ss_dssp HHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEE
T ss_pred HHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCceE
Confidence 88752 12 2 36888888887544 334433311 0 01
Q ss_pred ecCCCC------C--CCcCC------------------HHHHHhhhc--------cCCcEEEEcCC-CCCccc-CCCHHH
Q 012095 206 LPTRIS------E--NFLLD------------------PKVLESKLT--------EKSRLLILCSP-SNPTGS-VYPKNL 249 (471)
Q Consensus 206 v~~~~~------~--~~~ld------------------~e~l~~~l~--------~~~~~i~i~~p-~NPtG~-~~~~~~ 249 (471)
++.... + .|. + .+.|++.+. +++.+|++... ++..|. +++++.
T Consensus 539 ~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~ 617 (831)
T 4a0g_A 539 ISLPESFSEIAPEYGTFT-SRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLF 617 (831)
T ss_dssp EECCTTSCCCCSSTTEES-CHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHH
T ss_pred ecCCcccccccccccccc-chhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHH
Confidence 111100 0 010 1 256777664 23445555543 677775 558899
Q ss_pred HHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccc-hhheeeEcCHHHHHHHHHH-
Q 012095 250 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI- 327 (471)
Q Consensus 250 l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~R~G~v~~~~~~i~~l~~~- 327 (471)
+++|.++|++| |+++|+||++..|...|... ......-..| +.+|||.++ .| +++|++++++++++.+...
T Consensus 618 L~~l~~lc~~~-gilLI~DEV~tGfGRtG~~f-a~e~~gv~PD----iitlsK~L~-gG~~Plgav~~~~~i~~~~~~~~ 690 (831)
T 4a0g_A 618 QRVLVNECRNR-KIPVIFDEVFTGFWRLGVET-TTELLGCKPD----IACFAKLLT-GGMVPLAVTLATDAVFDSFSGDS 690 (831)
T ss_dssp HHHHHHHHHHT-TCCEEEECTTTTTTTTSBSS-THHHHSSCCS----EEEECGGGG-TTSSCCEEEEECHHHHHTTCSSC
T ss_pred HHHHHHHHHHc-CCeEEEEcCccccccCCCch-hhHhcCCCCc----EEEEecccc-cCccCcEEEEECHHHHHHHhccc
Confidence 99999999999 99999999999875444321 1111111112 336999997 67 8999999999999987542
Q ss_pred -----HhcccCCCChHHHHHHHHHHhccCCChHHHHHH---HHHHHH-HHHHHHHHhcCCCCCeeeCCCcceEEeEecCC
Q 012095 328 -----QSQFTSGASSISQKAGVAALGLGYAGGEVVSKM---VKAFRE-RRDFLVKSFGELEGVKMSEPQGAFYLFIDFST 398 (471)
Q Consensus 328 -----~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~---~~~~~~-~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~ 398 (471)
....+++.++++++++.++|+.-.. +++.+++ .+++++ .++.+.+.+.+.+.+......|.| +.+.+..
T Consensus 691 ~~~~~~hg~T~~g~Pla~Aaala~L~~i~~-~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg~Gl~-~~iel~~ 768 (831)
T 4a0g_A 691 KLKALLHGHSYSAHAMGCATAAKAIQWFKD-PETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTL-FALELKA 768 (831)
T ss_dssp GGGSCCCCCTTTTCHHHHHHHHHHHHHHHC-TTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEEETTE-EEEEEC-
T ss_pred ccccceeecCCcccHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEeecccE-EEEEEec
Confidence 1335677899999999998874110 1111111 111111 012234445555555555555555 5555532
Q ss_pred ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHHHHHHHhhC
Q 012095 399 YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~ 466 (471)
... ..+. .......+.+.|+++ ||++.|+. +.+|++.. .++++|++++++|.++++++.
T Consensus 769 ~~~--~~~~-~~~~a~~~~~~l~e~-Gv~v~p~g-----~~lrl~pp~~~t~e~id~~~~~l~~~l~~l~ 829 (831)
T 4a0g_A 769 DAS--NSGY-ASLYAKSLLIMLRED-GIFTRPLG-----NVIYLMCGPCTSPEICRRLLTKLYKRLGEFN 829 (831)
T ss_dssp -----------CHHHHHHHHHHHHT-TEECCCBT-----TEEEEECCTTCCHHHHHHHHHHHHHHHTTTC
T ss_pred Ccc--cccc-chHHHHHHHHHHHHC-CcEEEecC-----CEEEEECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 100 0000 001245788888875 99998852 68999854 499999999999999998764
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-15 Score=150.74 Aligned_cols=311 Identities=18% Similarity=0.190 Sum_probs=198.8
Q ss_pred HHHHHHH-HHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCC---C-CeEEEcCCCCCChHHHHHHcCCEEEEecCCC
Q 012095 136 ELRSAIC-HKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSP---G-DEVIIPAPFWVSYPEMARIADATPVILPTRI 210 (471)
Q Consensus 136 ~lr~~ia-~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~---g-d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~ 210 (471)
.|-+.++ +++. ..|++ .....++++|+|.++..++.+.+++ | |.|+++.-+|.+....+.++|+++++++...
T Consensus 116 ~ltn~l~ld~L~-~~G~~-~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~ 193 (501)
T 3hl2_A 116 KITNSLVLDIIK-LAGVH-TVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVL 193 (501)
T ss_dssp HHHHHHHHHHHH-HTTCT-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEE
T ss_pred HHHHHHHHHHHH-HcCCC-CCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeee
Confidence 3444444 4444 44875 4457899999998888777777764 4 9999999999999999999999999998632
Q ss_pred C-CCCcCCHHHHHhhhccC---CcEEEEc-CCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccc-cCCCCcccc
Q 012095 211 S-ENFLLDPKVLESKLTEK---SRLLILC-SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII-YAPATHTSF 284 (471)
Q Consensus 211 ~-~~~~ld~e~l~~~l~~~---~~~i~i~-~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~-~~~~~~~~~ 284 (471)
+ +.+++|++.++++|.+. ..++++. .+.|-.|.+-+ +++|+++|++| |+++++||+|+... +........
T Consensus 194 d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd---I~eIaeIch~~-gIpllVDeAhGah~~~~~~lp~sA 269 (501)
T 3hl2_A 194 EGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR---LEELAVICANY-DIPHIVNNAYGVQSSKCMHLIQQG 269 (501)
T ss_dssp ETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC---HHHHHHHHHHH-TCCEEEECTTCTTCHHHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCccccc---HHHHHHHHHHc-CCeEEEeCcchhhhhhhhhhHHHH
Confidence 2 35789999999999652 3344444 44564556677 99999999999 99999999998532 111101112
Q ss_pred ccCCCCCCceEEEecCCcccCccchhheeeE-c-CHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHH
Q 012095 285 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIA-G-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 362 (471)
Q Consensus 285 ~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~-~-~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~ 362 (471)
..+. .-.+++.|..|.+-++ +. |+++ . ++++++++..... .. .+...+.......+.. ..+.++++.+
T Consensus 270 ~~~G---rAD~vVqS~HK~llvp-IG-G~ii~~~d~e~l~~~~~~yP-Gr-~S~Spsldl~~tLL~l---Gr~Gy~~ll~ 339 (501)
T 3hl2_A 270 ARVG---RIDAFVQSLDKNFMVP-VG-GAIIAGFNDSFIQEISKMYP-GR-ASASPSLDVLITLLSL---GSNGYKKLLK 339 (501)
T ss_dssp HHHS---CCCEEEEEHHHHHCCC-SS-CEEEEESCHHHHHHHHHTSC-SC-BCSHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HhcC---CCcEEEecccccceee-cC-ceEEEeCCHHHHHHHHHhCC-CC-CCCcHHHHHHHHHHHH---HHHHHHHHHH
Confidence 2221 1347899999998433 22 4444 3 5677777644221 11 1223333233444443 2566788888
Q ss_pred HHHHHHHHHHHHhcCC---CCCeeeC-CCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcC--CEEE-ECCC---
Q 012095 363 AFRERRDFLVKSFGEL---EGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA--QVAL-VPGD--- 432 (471)
Q Consensus 363 ~~~~~r~~l~~~L~~~---~g~~~~~-p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~--gV~v-~pg~--- 432 (471)
+..++.+++.+.|+++ -|-++.. |...+-+-+.+...-.. . ..+...|...|..+. |.-| .+|.
T Consensus 340 e~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~--~----~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~ 413 (501)
T 3hl2_A 340 ERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEH--R----DKAVTQLGSMLFTRQVSGARVVPLGSMQT 413 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTT--T----SCHHHHHHHHHHHTTCCSCEEECTTCCEE
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEeccccccc--c----cccHHHHHHHHHhcCCCcceeecCCCceE
Confidence 8888888888888774 2444432 33444455555432100 0 013456677777662 3344 4454
Q ss_pred -------CCCCC------CcEEEEeec--CHHHHHHHHHHHHHHHHhhCCC
Q 012095 433 -------AFGDD------TCIRISYAA--SLTTLQAAVERIKKGLLTLRPG 468 (471)
Q Consensus 433 -------~f~~~------~~iRis~~~--~~e~i~~~~~~l~~~l~~~~~~ 468 (471)
.||.. .|+-++.+- +.+|++.++.+|.+++.+++.+
T Consensus 414 i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~~ 464 (501)
T 3hl2_A 414 VSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKE 464 (501)
T ss_dssp ETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred ECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 45532 477776654 8999999999999999887654
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.1e-14 Score=139.07 Aligned_cols=336 Identities=15% Similarity=0.092 Sum_probs=207.2
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCC-CC------CCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cEEEeCChHHH
Q 012095 97 VIRLAAGEPDFDTPVLIAEAGINAIREGF-TR------YTPNAGTLELRSAICHKLKEENGLSYTPD--QILVSNGAKQS 167 (471)
Q Consensus 97 ~i~l~~g~~~~~~p~~v~~a~~~~~~~~~-~~------Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~--~i~it~G~~~a 167 (471)
-|.|=..++. .++.+.+++-..+.+.. -+ |+...-..++.....++..+.||.....+ ||-.-+|+ .|
T Consensus 56 ~ieLIASEN~--~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs-~A 132 (490)
T 3ou5_A 56 GLELIASENF--CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGS-PA 132 (490)
T ss_dssp SEECCTTCCC--CCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-HH
T ss_pred CceEecCCCc--CCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHH-HH
Confidence 4777777765 35677777776665432 22 33333345666666677888899655443 55555555 55
Q ss_pred HHHHHHHhcCCCCeEEEcCCCCCChHHH--------HHHcC--CEEEEecCCCCCCCcCCHHHHHhhhc-cCCcEEEEcC
Q 012095 168 ILQAVLAVCSPGDEVIIPAPFWVSYPEM--------ARIAD--ATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCS 236 (471)
Q Consensus 168 l~~~~~~l~~~gd~Vlv~~p~y~~~~~~--------~~~~G--~~~~~v~~~~~~~~~ld~e~l~~~l~-~~~~~i~i~~ 236 (471)
...++.+|++|||+|+..+....++... ....| .+.+.++++++ +..+|.|++++... .+||+|+.-.
T Consensus 133 N~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~-t~~IDyd~~~~~A~~~kPklIi~G~ 211 (490)
T 3ou5_A 133 NLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPK-TGLIDYNQLALTARLFRPRLIIAGT 211 (490)
T ss_dssp HHHHHHHHCC-CCCEECBC----------------------------CBCEETT-TTEECHHHHHHHHHHHCCSEEEECC
T ss_pred HHHHHHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCC-CCcccHHHHHHHHhhcCCCeEEECC
Confidence 6668999999999999888766554321 11222 24555666654 45799999999764 5899888743
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEc
Q 012095 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 316 (471)
Q Consensus 237 p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~ 316 (471)
-.+| ..++ ++++.++|.+. |.++++|-+|.-....+...++..... .++..|..|+| .|-|-|.+.+
T Consensus 212 SaY~--r~id---~~~~reIAd~v-GA~Lm~DmAHiaGLVA~g~~psP~~~A-----DvVTtTTHKTL--rGPrGG~Il~ 278 (490)
T 3ou5_A 212 SAYA--RLID---YARMREVCDEV-KAHLLADMAHISGLVAAKVIPSPFKHA-----DIVTTTTHKTL--RGARSGLIFY 278 (490)
T ss_dssp SSCC--SCCC---HHHHHHHHHHH-TCEEEEECGGGHHHHHTTSSCCGGGTC-----SEEEEESSSTT--CSCSCEEEEE
T ss_pred ccCc--cccC---HHHHHHHHhhc-ccEEEechhhhhhhhcccccCCccccc-----eEEeccccccc--cCCCceEEEe
Confidence 3333 3456 78888888898 999999999874333232333333322 28899999997 7889999988
Q ss_pred CH---------------HHHHHHHHHHhcccCCCChHHHHHHHH-HHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 012095 317 PK---------------HFVAACNKIQSQFTSGASSISQKAGVA-ALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 380 (471)
Q Consensus 317 ~~---------------~~i~~l~~~~~~~~~~~~~~~q~aa~~-~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g 380 (471)
++ ++.+++.+..-+...+.+-.-..|+.+ ++.+. .........+...++.+.|.+.|.+. |
T Consensus 279 ~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea--~~p~fk~Ya~qVv~NAkaLA~~L~~~-G 355 (490)
T 3ou5_A 279 RKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQA--CTPMFREYSLQVLKNARAMADALLER-G 355 (490)
T ss_dssp ECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred ccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHH--HhHhHHHHHHHHHHHHHHHHHHHHhC-C
Confidence 65 567777776555444444444433333 23321 12345666677778888899999887 8
Q ss_pred CeeeC-CCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEE----CCCC-CCCCCcEEEEeec------CH
Q 012095 381 VKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV----PGDA-FGDDTCIRISYAA------SL 448 (471)
Q Consensus 381 ~~~~~-p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~----pg~~-f~~~~~iRis~~~------~~ 448 (471)
+.+.. ...+..+++++... + .+. .-++.+|++.||.+. |+.. ...+..|||.... .+
T Consensus 356 ~~vvsGgTdnHlvLvDl~~~-g---------~tG-~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e 424 (490)
T 3ou5_A 356 YSLVSGGTDNHLVLVDLRPK-G---------LDG-ARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFRE 424 (490)
T ss_dssp CEEGGGSCSSSEEEEECGGG-T---------CCH-HHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCH
T ss_pred CeeecCCCCceEEEEecccc-C---------CCH-HHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCH
Confidence 88763 33356678887543 1 133 445556778899875 4431 0124579998753 67
Q ss_pred HHHHHHHHHHHHHHH
Q 012095 449 TTLQAAVERIKKGLL 463 (471)
Q Consensus 449 e~i~~~~~~l~~~l~ 463 (471)
+++++..+-|.+++.
T Consensus 425 ~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 425 DDFRRVVDFIDEGVN 439 (490)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 889888888887764
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-13 Score=138.97 Aligned_cols=314 Identities=18% Similarity=0.173 Sum_probs=191.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCC----CCeEEEcCCCCCChHHHHHHcCCEEEEecC
Q 012095 133 GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSP----GDEVIIPAPFWVSYPEMARIADATPVILPT 208 (471)
Q Consensus 133 G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~----gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~ 208 (471)
+...+.+.+..++.+..|.+ +....++++|+|.+...++.+.+++ ++.|+++.-+|.+...++.++|+.++.++.
T Consensus 95 ~~~~~e~~~~~~~~~~lGlp-~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~~ 173 (450)
T 3bc8_A 95 LLNKITNSLVLNVIKLAGVH-SVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIEN 173 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCT-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHHhCCCC-CCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEEEEe
Confidence 35567778888888888865 3455688889885555555555554 899999999999999999999999999976
Q ss_pred CC-CCCCcCCHHHHHhhhcc---CCcEEEEcCC-CCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccC-CCCcc
Q 012095 209 RI-SENFLLDPKVLESKLTE---KSRLLILCSP-SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA-PATHT 282 (471)
Q Consensus 209 ~~-~~~~~ld~e~l~~~l~~---~~~~i~i~~p-~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~-~~~~~ 282 (471)
.. ++.+.+|++.|+++|.+ +.+++++.+| ++.+|.+-+ +++|+++|++| |+++++|++|+..... .....
T Consensus 174 ~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd---l~~Ia~ia~~~-gi~l~VD~A~G~~~~~~~~l~~ 249 (450)
T 3bc8_A 174 VLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR---LEELAVICANY-DIPHVVNNAYGLQSSKCMHLIQ 249 (450)
T ss_dssp EEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC---HHHHHHHHHHH-TCCEEEECTTTTTCHHHHHHHH
T ss_pred eecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecC---HHHHHHHHHHC-CCeEEEECCCchhhhhhHhHHH
Confidence 43 23578999999999965 2456666666 455678888 99999999999 9999999999853210 00000
Q ss_pred ccccCCCCCCceEEEecCCcccCccchhheeeEc-CHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHH
Q 012095 283 SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 361 (471)
Q Consensus 283 ~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~-~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~ 361 (471)
...... .-..++.|..|++.. -.-.+++.. +++.++++..... .....+++.......+.. ..+.+.+..
T Consensus 250 ~a~~~~---~AD~~v~S~HK~l~a-~~~~~~l~~rd~~~~~~~~~~~~--g~~s~SpsL~l~~~l~~~---G~~g~~~~i 320 (450)
T 3bc8_A 250 QGARVG---RIDAFVQSLDKNFMV-PVGGAIIAGFNEPFIQDISKMYP--GRASASPSLDVLITLLSL---GCSGYRKLL 320 (450)
T ss_dssp HHHHHS---CCCEEEEEHHHHHSC-CSSCEEEEESCHHHHHHHHHHSC--SCBCSHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHhccc---CCCEEEECCccCCCc-hhccEEEEecCHHHHHHHHHHhh--cCCcccHHHHHHHHHHHH---HHHHHHHHH
Confidence 111111 223678899999853 333455554 6666666644321 111223333333333332 244556666
Q ss_pred HHHHHHHHHHHHHhcCCC---CCeeeCCCc-ceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHc--CCEEEEC-----
Q 012095 362 KAFRERRDFLVKSFGELE---GVKMSEPQG-AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK--AQVALVP----- 430 (471)
Q Consensus 362 ~~~~~~r~~l~~~L~~~~---g~~~~~p~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~--~gV~v~p----- 430 (471)
++..+..+++.+.+++++ |..+..... +.-..+.++..... . ..|...+.-.+... .|.-+.+
T Consensus 321 ~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~--~----~~D~tkl~i~~~~~g~sG~~v~~~~~~~ 394 (450)
T 3bc8_A 321 KERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGH--H----DKAVTQLGSMLFTRQVSGARAVPLGNVQ 394 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSS--S----SCHHHHHHHHHHHTTCCSCEEECSCCEE
T ss_pred HHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeeccccccc--c----cCCCceeEEEecCCCCccceeeeccccc
Confidence 666666777777776665 665543221 11111223211000 0 01445566555443 2334431
Q ss_pred ---CCC---CC------CCCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012095 431 ---GDA---FG------DDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 431 ---g~~---f~------~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~~ 466 (471)
|.. |+ ...+|=+.++. +++++++++++|+++.++++
T Consensus 395 ~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~ 444 (450)
T 3bc8_A 395 TVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVR 444 (450)
T ss_dssp EETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 111 22 12455554443 89999999999999877654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 471 | ||||
| d1j32a_ | 388 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho | 1e-113 | |
| d1b5pa_ | 382 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 1e-109 | |
| d1gdea_ | 388 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 7e-97 | |
| d1xi9a_ | 395 | c.67.1.1 (A:) Putative alanine aminotransferase {P | 2e-78 | |
| d1o4sa_ | 375 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 5e-74 | |
| d2hoxa1 | 425 | c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ | 8e-72 | |
| d1w7la_ | 418 | c.67.1.1 (A:) Kynurenine--oxoglutarate transaminas | 3e-68 | |
| d2r5ea1 | 418 | c.67.1.1 (A:12-429) Kynurenine--oxoglutarate trans | 1e-60 | |
| d1m7ya_ | 431 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 1e-52 | |
| d1u08a_ | 382 | c.67.1.1 (A:) Putative methionine aminotransferase | 2e-52 | |
| d1iaya_ | 428 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 1e-51 | |
| d3tata_ | 397 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 2e-51 | |
| d2gb3a1 | 389 | c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotog | 2e-50 | |
| d1ajsa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig | 4e-50 | |
| d1v2da_ | 368 | c.67.1.1 (A:) Glutamine aminotransferase {Thermus | 4e-50 | |
| d1c7na_ | 394 | c.67.1.3 (A:) Cystalysin {Treponema denticola [Tax | 4e-49 | |
| d1bw0a_ | 412 | c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Try | 7e-49 | |
| d2q7wa1 | 396 | c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT | 5e-47 | |
| d7aata_ | 401 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi | 5e-47 | |
| d1wsta1 | 403 | c.67.1.1 (A:13-415) Multiple substrate aminotransf | 3e-46 | |
| d1d2fa_ | 361 | c.67.1.3 (A:) Modulator in mal gene expression, Ma | 7e-46 | |
| d1yaaa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak | 9e-46 | |
| d2ay1a_ | 394 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 1e-38 | |
| d1vp4a_ | 420 | c.67.1.1 (A:) Putative aminotransferase TM1131 {Th | 2e-36 | |
| d2aeua1 | 366 | c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Ar | 4e-29 | |
| d1lc5a_ | 355 | c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxyl | 5e-22 | |
| d2f8ja1 | 334 | c.67.1.1 (A:1-334) Histidinol-phosphate aminotrans | 2e-21 | |
| d1fg7a_ | 354 | c.67.1.1 (A:) Histidinol-phosphate aminotransferas | 2e-19 | |
| d3bc8a1 | 445 | c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase | 1e-09 | |
| d1p3wa_ | 391 | c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich | 7e-06 |
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Score = 337 bits (864), Expect = e-113
Identities = 176/396 (44%), Positives = 243/396 (61%), Gaps = 15/396 (3%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
L+ RV +V PS T+ I +A A+ G+ V +AGEPDF+TP I EA A+ +G TR
Sbjct: 3 LAARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTR 62
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
Y P AG LR AI KL+ +NGL Y D ILV+NG KQSI +LA+ PGDEVIIPAP
Sbjct: 63 YGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAP 122
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
FWVSYPEM ++A+ TPVILPT + F + P+ + +T K++LL+ +PSNPTG VY
Sbjct: 123 FWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTP 182
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 306
+ + IA++ + L VLSDEIYE I+Y A H S + P +ER++ +GF+K +AM
Sbjct: 183 DEVRAIAQVAVEAG-LWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAM 241
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
TGWR+G++AGP V A KIQ TS + +Q +AA + V +M+ AF E
Sbjct: 242 TGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQ---DCVQEMLAAFAE 298
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
RR +++ + + G++ +P GAFY+F + +S C LLD+ QV
Sbjct: 299 RRRYMLDALNAMPGLECPKPDGAFYMFPSIA----------KTGRSSLDFCSELLDQHQV 348
Query: 427 ALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGL 462
A VPG AFG D CIR+SYA L T++ +ER++K L
Sbjct: 349 ATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFL 384
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Score = 325 bits (835), Expect = e-109
Identities = 163/394 (41%), Positives = 229/394 (58%), Gaps = 16/394 (4%)
Query: 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT 126
LS RV A+KPS TVA+ +A L + GV ++ L AGEPDFDTP + EA A+ +G T
Sbjct: 3 GLSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKT 62
Query: 127 RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 186
+Y P AG ELR A+ K + ENGLS TP++ +V+ G Q++ A+ PGDEVI+ +
Sbjct: 63 KYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLS 122
Query: 187 PFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 246
P+WVSYPEM R A V + T E F+ DP+ + +T +++ L++ SP+NPTG+VYP
Sbjct: 123 PYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYP 182
Query: 247 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306
K +L+ +AR+ +H ++SDEIYEH++Y + P E TLTVNG +KAFAM
Sbjct: 183 KEVLEALARLAVEH-DFYLVSDEIYEHLLYEGEHFSPGRVAP---EHTLTVNGAAKAFAM 238
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
TGWR+GY GPK + A + Q T+ +I+Q A + AL A V +A+R
Sbjct: 239 TGWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRR 298
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
RRD L++ L G+K P GAFY+ +D S I E L +A V
Sbjct: 299 RRDLLLEGLTAL-GLKAVRPSGAFYVLMDTS-----------PIAPDEVRAAERLLEAGV 346
Query: 427 ALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 460
A+VPG F +R+SYA S L+ A+ER +
Sbjct: 347 AVVPGTDFAAFGHVRLSYATSEENLRKALERFAR 380
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 295 bits (755), Expect = 7e-97
Identities = 161/399 (40%), Positives = 222/399 (55%), Gaps = 20/399 (5%)
Query: 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT 126
+LS R+ V S+ + D +A VI L GEPDFDTP I E A+ +G T
Sbjct: 1 ALSDRLELVSASEIRKLFD----IAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKGLT 56
Query: 127 RYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIP 185
Y PN G LELR AI KLK++NG+ P +I+V GA Q+ L + A G+EV+IP
Sbjct: 57 HYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIP 116
Query: 186 APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245
P +VSY +A PV +PT + F L+ L+ +T+K+R LI+ SP NPTG+V
Sbjct: 117 TPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVL 176
Query: 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305
K L+EIA V +H L+V+SDE+YEH IY A H S ASL GM+ERT+TVNGFSK FA
Sbjct: 177 TKKDLEEIADFVVEHD-LIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFA 235
Query: 306 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 365
MTGWRLG++A P + K Q + + Q A AL + V +M K +
Sbjct: 236 MTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALK-DERSWKAVEEMRKEYD 294
Query: 366 ERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 425
RR + K E G+ +P+GAFY+F S+ +L +A+
Sbjct: 295 RRRKLVWKRLNE-MGLPTVKPKGAFYIFPRIR----------DTGLTSKKFSELMLKEAR 343
Query: 426 VALVPGDAFG--DDTCIRISYAASLTTLQAAVERIKKGL 462
VA+VPG AFG + +RISYA + L+ A++R+++ L
Sbjct: 344 VAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVL 382
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Score = 247 bits (631), Expect = 2e-78
Identities = 105/407 (25%), Positives = 185/407 (45%), Gaps = 26/407 (6%)
Query: 66 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP---DFDTPVLIAEAGINAIR 122
+ S R +V + A L + G+ VIRL G+P DF P + EA AI+
Sbjct: 2 IRASKRALSV-EYAIRDVVLPARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIK 60
Query: 123 EGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEV 182
EG Y + G ELR AI + K +NG+ TPD + V+ +++ A+ PGDE+
Sbjct: 61 EGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEI 120
Query: 183 IIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTG 242
++P P + Y + + PV T E++ D + K+T++++ + + +P+NPTG
Sbjct: 121 LVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTG 180
Query: 243 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK 302
++Y K L+EI I ++ + + + + +NG SK
Sbjct: 181 ALYDKKTLEEILNIAGEYE---IPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSK 237
Query: 303 AFAMTGWRL--GYIAGPKHFVAA---CNKIQSQFTSGASSISQKAGVAALGLGYAGGEVV 357
+ TGWRL Y P++ ++ ++ ++ +Q A +A L + +
Sbjct: 238 VYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLT---GPMDYL 294
Query: 358 SKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLC 417
+ +K +ERRD++ K E+ G+ ++PQGAFY+F G +N +
Sbjct: 295 KEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIE---------VGPWKNDKEFV 345
Query: 418 RYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGL 462
+L A V V G FG+ R + + L+ A++R +K +
Sbjct: 346 LDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFM 392
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Score = 235 bits (600), Expect = 5e-74
Identities = 137/395 (34%), Positives = 220/395 (55%), Gaps = 22/395 (5%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
+S R++ + SKT+ + +A AL + G VI L AGEPDF TP + E + +++G +
Sbjct: 1 VSRRISEIPISKTMELDAKAKALIKKGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVK 60
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YT G ELR I ++ E +PDQ++V+NGAKQ++ A +A+ PGDEVI+ +P
Sbjct: 61 YTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSP 120
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
WVSY +A T ++ T +S+NF + +E L K++ +++ SP+NPTG VY +
Sbjct: 121 VWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRR 180
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307
L+ + R+ K + + + TS + ++R + +NGFSK+ +MT
Sbjct: 181 EFLEGLVRLAKKRN--FYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMT 238
Query: 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367
GWR+GY+ + A +KIQS TS ++++Q A + AL + S MV+ F+ER
Sbjct: 239 GWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVDN------SYMVQTFKER 292
Query: 368 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 427
++F+V+ ++ GVK EP+GAFYLF + C LL++ +VA
Sbjct: 293 KNFVVERLKKM-GVKFVEPEGAFYLFFKVR-------------GDDVKFCERLLEEKKVA 338
Query: 428 LVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGL 462
LVPG AF +R+S+A S+ L A++RI+ L
Sbjct: 339 LVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFL 373
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Score = 231 bits (590), Expect = 8e-72
Identities = 54/391 (13%), Positives = 115/391 (29%), Gaps = 53/391 (13%)
Query: 96 SVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTR--YTPNAGTL----ELRSAICHKLKEE 148
+A+G+ F +A+ + R Y N + EL I +
Sbjct: 57 CSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVV 116
Query: 149 NGLSYTPDQILVSNGAKQSILQAVLAV--------CSPGDEVIIPAPFWVSYPEMARIAD 200
+ I+ G Q I V+++ +P +V+ APF+ + E + D
Sbjct: 117 GNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFD 176
Query: 201 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 260
+ + + + + ++ SP+NP G +
Sbjct: 177 KKGY--------VWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRHA------------- 215
Query: 261 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGPKH 319
++ IY+ + Y P + + + + + SK +G R G+ + +
Sbjct: 216 --VIKGCKSIYDMVYYWP----HYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDES 269
Query: 320 FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG--------EVVSKMVKAFRERRDFL 371
++ T G +Q + L A ++ + K RER +
Sbjct: 270 VYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNI 329
Query: 372 VKSFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 430
+ + E PQ + + + C ++
Sbjct: 330 TALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQN 389
Query: 431 GDAFG-DDTCIRISYAASLTTLQAAVERIKK 460
G F +R+S + + +K
Sbjct: 390 GVGFEASSRYVRLSLIKTQDDFDQLMYYLKD 420
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Score = 221 bits (564), Expect = 3e-68
Identities = 110/418 (26%), Positives = 181/418 (43%), Gaps = 31/418 (7%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGF-- 125
+ R++ + + V LA + V+ L G PDF P EA +A+ F
Sbjct: 3 QARRLDGIDYNPWVEFV----KLA-SEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFML 57
Query: 126 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQ-ILVSNGAKQSILQAVLAVCSPGDEVII 184
+YT G L + E G P + +LV+ G ++ A A+ GDEVII
Sbjct: 58 NQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVII 117
Query: 185 PAPFWVSYPEMARIADATPVILPTR----------ISENFLLDPKVLESKLTEKSRLLIL 234
PF+ Y M +A PV + + S N+ LDP L K T +++ L+L
Sbjct: 118 IEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVL 177
Query: 235 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 294
+P+NP G V+ + L+ +A + +H ++ ++DE+Y+ ++Y H S ASLPGMWERT
Sbjct: 178 NTPNNPLGKVFSREELELVASLCQQHD-VVCITDEVYQWMVYDGHQHISIASLPGMWERT 236
Query: 295 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG 354
LT+ K F+ TGW++G++ GP H + + + SQ A +
Sbjct: 237 LTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLF 296
Query: 355 EVVSKMVKAFRERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 411
S F + G+K PQG+++L D S + + G ++
Sbjct: 297 RQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVD 356
Query: 412 --NSESLCRYLLDKAQVALVPGDAFGD-------DTCIRISYAASLTTLQAAVERIKK 460
++++ + +P F D IR + TLQA E+++K
Sbjct: 357 EPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRK 414
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Score = 201 bits (512), Expect = 1e-60
Identities = 97/416 (23%), Positives = 170/416 (40%), Gaps = 29/416 (6%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG--- 124
L R S V LA A + L G PD+ P A A
Sbjct: 4 LPKRYQGSTKSVWVEYI----QLA-AQYKPLNLGQGFPDYHAPKYALNALAAAANSPDPL 58
Query: 125 FTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVI 183
+YT G L A+ + + P ++LV+ GA +++ + GDEVI
Sbjct: 59 ANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVI 118
Query: 184 IPAPFWVSYPEMARIADATPVILPTRISEN--------FLLDPKVLESKLTEKSRLLILC 235
I PF+ Y M + A P +P + ++ ++LD LE+ EK++++I+
Sbjct: 119 IIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIIN 178
Query: 236 SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 295
+P NP G V + L+ +A + K +L +SDE+YEH+++ P H +LPGMWERT+
Sbjct: 179 TPHNPLGKVMDRAELEVVANLCKKW-NVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTI 237
Query: 296 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE 355
T+ K F++TGW++G+ GP+ + + ++ Q+A +
Sbjct: 238 TIGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLK 297
Query: 356 VVSKMVKAFRERRD---FLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGS-EAEGFGKIE 411
+ + SF G+ + PQG +++ D+S+ +
Sbjct: 298 SPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDAR 357
Query: 412 NSESLCRYLLDKAQVALVPGDAFGDDT-------CIRISYAASLTTLQAAVERIKK 460
+++ + +P AF + +R + LQ A E ++K
Sbjct: 358 KDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRK 413
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Score = 180 bits (458), Expect = 1e-52
Identities = 55/397 (13%), Positives = 131/397 (32%), Gaps = 38/397 (9%)
Query: 97 VIRLAAGEPDFDTPVL-----------IAEAGINAIREGFTRYTPNAGTLELRSAICHKL 145
+I++ E +L + +I + G + A+ +
Sbjct: 38 IIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFM 97
Query: 146 KE--ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATP 203
E N +++ P+ ++++ GA + + + PG+ V+IP P++ + +
Sbjct: 98 AEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVE 157
Query: 204 VILPTRISENFLLDPKVLESKLTEKSRLL------ILCSPSNPTGSVYPKNLLDEIARIV 257
++ S N + + +++ +L + + +
Sbjct: 158 IVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSF 217
Query: 258 AKHPRLLVLSDEIYEHIIYAPATHTSFASLP---------GMWERTLTVNGFSKAFAMTG 308
+ + ++SDEIY ++ + S + +W+R V SK + G
Sbjct: 218 VEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPG 277
Query: 309 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 368
+R+G I V A S F +S + + + ++
Sbjct: 278 FRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQK 337
Query: 369 DFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL 428
S + G+ + ++D S E L + ++ + + +
Sbjct: 338 KL--VSGLQKSGISCLNGNAGLFCWVDMRHLLRSNT-----FEAEMELWKKIVYEVHLNI 390
Query: 429 VPGDAFG--DDTCIRISYAASLT-TLQAAVERIKKGL 462
PG + + R+ +A TL A++R+K +
Sbjct: 391 SPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFV 427
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Score = 179 bits (453), Expect = 2e-52
Identities = 106/389 (27%), Positives = 177/389 (45%), Gaps = 21/389 (5%)
Query: 77 PSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLE 136
P I Q +ALAQ I L+ G PDFD P + E + + +G +Y P G
Sbjct: 9 PQLGTTIFTQMSALAQ-QHQAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQA 67
Query: 137 LRSAICHKLKEENGLSYTPDQ-ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM 195
LR AI K + G D I V+ GA +++ A+ A+ GDEVI P + SY
Sbjct: 68 LREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPA 127
Query: 196 ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR 255
++ V +F +D + + L+E++RL+IL +P + + +
Sbjct: 128 IALSG-GIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTP-HNPSATVWQQADFAALW 185
Query: 256 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 315
+ V+SDE+YEHI ++ H S + P + ER + V+ F K + MTGW++GY
Sbjct: 186 QAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCV 245
Query: 316 GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF 375
P +I+ S++ A +A + A E + +R++RD LV +
Sbjct: 246 APAPI---SAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNAL 302
Query: 376 GELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 435
E +++ +G ++L +D+S + C++L + VA +P F
Sbjct: 303 NE-SRLEILPCEGTYFLLVDYSAV---------STLDDVEFCQWLTQEHGVAAIPLSVFC 352
Query: 436 DD----TCIRISYAASLTTLQAAVERIKK 460
D IR+ +A +TL AA ER+++
Sbjct: 353 ADPFPHKLIRLCFAKKESTLLAAAERLRQ 381
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Length = 428 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Score = 178 bits (452), Expect = 1e-51
Identities = 69/399 (17%), Positives = 144/399 (36%), Gaps = 37/399 (9%)
Query: 97 VIRLAAGEP--DFDT---------PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKL 145
VI++ E D I GI + + + G E R AI +
Sbjct: 38 VIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKA-IANFQDYHGLPEFRKAIAKFM 96
Query: 146 KEENG--LSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATP 203
++ G + + P++++++ GA + + + PGD ++P+P++ ++ R
Sbjct: 97 EKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQ 156
Query: 204 VIL-------PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARI 256
+I +I+ + + K K + LIL +PSNP G+ K+ L +
Sbjct: 157 LIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSF 216
Query: 257 VAKHPRLLVLSDEIYEHIIYAPATHTSFASLP------GMWERTLTVNGFSKAFAMTGWR 310
+H LV + + P + L + V SK + G+R
Sbjct: 217 TNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFR 276
Query: 311 LGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 370
+G I V C + S F ++ + + +R
Sbjct: 277 VGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAML--SDEKFVDNFLRESAMRLGKRHK 334
Query: 371 LVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 430
+ E+ G+K + + ++D ++ SL R +++ ++ + P
Sbjct: 335 HFTNGLEVVGIKCLKNNAGLFCWMDLRPLLREST-----FDSEMSLWRVIINDVKLNVSP 389
Query: 431 GDAFG--DDTCIRISYAAS-LTTLQAAVERIKKGLLTLR 466
G +F + R+ +A T+ A+ RI++ + +
Sbjct: 390 GSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGVEK 428
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Score = 177 bits (449), Expect = 2e-51
Identities = 69/389 (17%), Positives = 118/389 (30%), Gaps = 48/389 (12%)
Query: 98 IRLAAG---EPDFDTPVLI----AEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENG 150
+ L+ G D P L AEA +NA G + Y P G R AI L +
Sbjct: 29 VNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADH 88
Query: 151 LSYTPDQILVSNGAKQSILQAVLAVC----SPGDEVIIPAPFWVSYPEMARIADATPVIL 206
++ S V A P V + P W ++ + A
Sbjct: 89 PVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTY 148
Query: 207 PTRISENFLLDPKVLES---KLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL 263
P + L + L +S +L+ NPTG+ + D + I K L
Sbjct: 149 PWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEI-LKAREL 207
Query: 264 LVLSDEIYEHIIYAPATH-TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA 322
+ D Y+ + ++ L N FSK F++ G R+G ++
Sbjct: 208 IPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAE 267
Query: 323 ACNKIQSQF-------TSGASSISQKAGVAALGLGYAGGEVVS---KMVKAFRERRDFLV 372
A ++ Q S + + A L ++ +M R LV
Sbjct: 268 AAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELV 327
Query: 373 KSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD 432
+ + P+ F ++ F S + L ++ V L+
Sbjct: 328 ------KVLSTEMPERNFDYLLNQRGM-------FSYTGLSAAQVDRLREEFGVYLIAS- 373
Query: 433 AFGDDTCIRISYAA-SLTTLQAAVERIKK 460
R+ A + +Q +
Sbjct: 374 -------GRMCVAGLNTANVQRVAKAFAA 395
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} Length = 389 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Score = 174 bits (441), Expect = 2e-50
Identities = 97/405 (23%), Positives = 177/405 (43%), Gaps = 31/405 (7%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
S RV + S + A + GV + L G+PD TP + E I +
Sbjct: 1 FSDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQPDLKTPEVFFER-IYENKPEVVY 59
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
Y+ +AG ELR A K + P+ +LV+NG ++IL + + +PGDE+++ P
Sbjct: 60 YSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEP 119
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
F+ +Y A+IA + + R+ E F P+ LES + E+++ ++L +P NPTG VY K
Sbjct: 120 FYANYNAFAKIAGVKLIPVTRRMEEGF-AIPQNLESFINERTKGIVLSNPCNPTGVVYGK 178
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307
+ + + I +H L ++ DE+Y I++ ++ ++ + ++ SK F+
Sbjct: 179 DEMRYLVEIAERHG-LFLIVDEVYSEIVFRGEFASAL---SIESDKVVVIDSVSKKFSAC 234
Query: 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367
G R+G + + + +Q + Q V + + +RER
Sbjct: 235 GARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGL---LNLDDSFFDFVRETYRER 291
Query: 368 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL-----D 422
+ ++K E + ++P GAFY+ + +E++E R++L D
Sbjct: 292 VETVLKKLEEHGLKRFTKPSGAFYITAEL------------PVEDAEEFARWMLTDFNMD 339
Query: 423 KAQVALVPGDAFG-----DDTCIRISYAASLTTLQAAVERIKKGL 462
+ P F IRI+ L A++ + +GL
Sbjct: 340 GETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGL 384
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Score = 173 bits (440), Expect = 4e-50
Identities = 58/429 (13%), Positives = 104/429 (24%), Gaps = 57/429 (13%)
Query: 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAG---EPDFDTPVLI----AEAGIN 119
S+ V +P + + L G D VL E I
Sbjct: 4 SVFAEVPQAQPVLVFKLIADFREDPDPRK--VNLGVGAYRTDDCQPWVLPVVRKVEQRIA 61
Query: 120 AIREGFTRYTPNAGTLELRSAICHKLKEENGLSY---------TPDQILVSNGAKQSILQ 170
Y P G E R+ ++ + + + + +
Sbjct: 62 NNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLAR 121
Query: 171 AVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKV----LESKLT 226
+ V + +P W ++ + A +
Sbjct: 122 WYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAP 181
Query: 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA- 285
E S ++ NPTG+ +IA + K L D Y+ ++A
Sbjct: 182 EFSIFVLHACAHNPTGTDPTPEQWKQIASV-MKRRFLFPFFDSAYQGFASGNLEKDAWAI 240
Query: 286 -SLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSI------ 338
FSK F + R+G + + ++ SQ
Sbjct: 241 RYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPA 300
Query: 339 -SQKAGVAALGLGYAGGEV---VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFI 394
+ L E V M R L L + G +
Sbjct: 301 QGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEAL------KTPGTWNHIT 354
Query: 395 DFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQA 453
D F + YL+++ + L+P RI+ + L
Sbjct: 355 DQIGM-------FSFTGLNPKQVEYLINQKHIYLLPS--------GRINMCGLTTKNLDY 399
Query: 454 AVERIKKGL 462
I + +
Sbjct: 400 VATSIHEAV 408
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Score = 172 bits (437), Expect = 4e-50
Identities = 109/398 (27%), Positives = 179/398 (44%), Gaps = 39/398 (9%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
L PR A K S I + + LAQ + + L G P P + EA A+ +
Sbjct: 3 LHPRTEAAKES----IFPRMSGLAQ-RLGAVNLGQGFPSNPPPPFLLEAVRRALGRQ-DQ 56
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
Y P AG LR A+ + P+ ++V++GA +++ + ++ PGDEV++ P
Sbjct: 57 YAPPAGLPALREALAEEFA------VEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEP 110
Query: 188 FWVSYPEMARIADATPVILPT-RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 246
F+ Y A +A A ++ E F LD LE LT ++R L+L +P NPTG V+
Sbjct: 111 FFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFG 170
Query: 247 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306
+ L+ IAR+ H L ++SDE+Y+ + Y ERT TV K
Sbjct: 171 ERELEAIARLARAH-DLFLISDEVYDELYYGERPRRLR---EFAPERTFTVGSAGKRLEA 226
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
TG+R+G+I GPK F+ ++ + A + Q AL L + + +R
Sbjct: 227 TGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLAR-REGFYEALREGYRR 285
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
RRD L + G+++ P+G ++L + L+++A+V
Sbjct: 286 RRDLLAGGLRAM-GLRVYVPEGTYFLMAEL----------------PGWDAFRLVEEARV 328
Query: 427 ALVPGDAFGDDT----CIRISYAASLTTLQAAVERIKK 460
AL+P AF + R ++ + L A+ER+ +
Sbjct: 329 ALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGR 366
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Score = 171 bits (432), Expect = 4e-49
Identities = 77/395 (19%), Positives = 148/395 (37%), Gaps = 16/395 (4%)
Query: 76 KPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTL 135
K ++ + + G V+ L+ + +F P + E + E YT T
Sbjct: 12 KNLGSLKWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTG--PTE 69
Query: 136 ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM 195
E + + +K+ + D I+ + G ++ AV PGD VII P + +
Sbjct: 70 EYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMA 129
Query: 196 ARIADATPVILPTRISENFLLDPKVLESKL--TEKSRLLILCSPSNPTGSVYPKNLLDEI 253
+ + + + + KL + ++ L+ CSP NP G V+ K+ L +I
Sbjct: 130 IKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKI 189
Query: 254 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 313
IV K +L + ++ I+ + + ++T+T SK F + G +
Sbjct: 190 KDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSN 249
Query: 314 IAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 373
I + TSG + + G + + + +R
Sbjct: 250 IIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDF 309
Query: 374 SFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 433
+K +G + +IDF + +++ +++ KAQ+ G
Sbjct: 310 FEVNHPEIKAPLIEGTYLQWIDFR----------ALKMDHKAMEEFMIHKAQIFFDEGYI 359
Query: 434 FGDDT--CIRISYAASLTTLQAAVERIKKGLLTLR 466
FGD RI+ AA + +Q ++ER+ K L L+
Sbjct: 360 FGDGGIGFERINLAAPSSVIQESLERLNKALKDLK 394
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Score = 170 bits (431), Expect = 7e-49
Identities = 93/416 (22%), Positives = 168/416 (40%), Gaps = 32/416 (7%)
Query: 65 DVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG 124
DVS+S V + ++D A + + +I+L+ G+P D +L + A I ++E
Sbjct: 2 DVSMSNHAGLV-FNPIRTVSDNAKP-SPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEA 59
Query: 125 -----FTRYTPNAGTLELRSAICHKLKE------ENGLSYTPDQILVSNGAKQSILQAVL 173
Y P G+ E R A+ + E + D +++ +G IL A+
Sbjct: 60 IDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAIT 119
Query: 174 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLI 233
A+C GD ++P P + Y + + R ++ D + +K++LLI
Sbjct: 120 AICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLI 179
Query: 234 LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM--- 290
+ +PSNP GS + + E +A+ RL + SDEIY +++ + +
Sbjct: 180 VTNPSNPCGSNFSRKH-VEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFET 238
Query: 291 WERTLTVNGFSKAFAMTGWRLGYIAGP------KHFVAACNKIQSQFTSGASSISQKAGV 344
+ + G +K + GWRLG++ F+ ++ + + G
Sbjct: 239 TVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGE 298
Query: 345 AALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEA 404
A E + ++V E +L GE G+ + P+GA YL
Sbjct: 299 AL---LNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRID------L 349
Query: 405 EGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 460
E + I+ LL++ V ++PG F R++ + + AVERIK
Sbjct: 350 EKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYREAVERIKA 405
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Score = 165 bits (418), Expect = 5e-47
Identities = 58/418 (13%), Positives = 109/418 (26%), Gaps = 55/418 (13%)
Query: 71 RVNAVKPSKTVAITDQATALAQAGVSVIRLAAG---EPDFDTPVL--IAEAGINAIREGF 125
+ A + + D A + G I L G + TPVL + +A +
Sbjct: 4 NITAAPADPILGLADLFRADERPGK--INLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 126 TR-YTPNAGTLELRSAICHKLKEENGLSYTPDQ----ILVSNGAKQSILQAVLAVCSPGD 180
T+ Y G E L + + + LA +
Sbjct: 62 TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 181 EVIIPAPFWVSYPEMARIADATPVILPTRISENFLL---DPKVLESKLTEKSRLLILCSP 237
V + P W ++ + A +EN L ++ +L
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 238 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA-SLPGMWERTLT 296
NPTG +A++ + L L D Y+ + M + +
Sbjct: 182 HNPTGIDPTLEQWQTLAQL-SVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIV 240
Query: 297 VNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS-------GASSISQKAGVAALGL 349
+ +SK F + R+G ++ SQ + + L
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN 300
Query: 350 GYAGGEV---VSKMVKAFRERRDFLVKSFGELEG---VKMSEPQGAFYLFIDFSTYYGSE 403
++ M + + R V + E Q + F
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGL------- 353
Query: 404 AEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKK 460
++ L ++ V V R++ A + + E I
Sbjct: 354 ---------TKEQVLRLREEFGVYAVAS--------GRVNVAGMTPDNMAPLCEAIVA 394
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Score = 165 bits (417), Expect = 5e-47
Identities = 63/420 (15%), Positives = 115/420 (27%), Gaps = 57/420 (13%)
Query: 71 RVNAVKPSKTVAITDQATALAQAGVSVIRLAAG---EPDFDTPVL--IAEAGINAIREGF 125
V P + +T+ + + L G + + VL + +A +
Sbjct: 6 HVEMGPPDPILGVTEAFKRDTNSKK--MNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKM 63
Query: 126 TR-YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-----SPG 179
+ Y P AG + A EN ++ + + G + V A
Sbjct: 64 DKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFS 123
Query: 180 DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL---TEKSRLLILCS 236
+V +P P W ++ + R A + LD + EKS +L+
Sbjct: 124 RDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHAC 183
Query: 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA--SLPGMWERT 294
NPTG + E+A + K LL D Y+ ++A
Sbjct: 184 AHNPTGVDPRQEQWKELASV-VKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDV 242
Query: 295 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSI-------SQKAGVAAL 347
+ ++K + G R G +++SQ + + L
Sbjct: 243 VLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLIL 302
Query: 348 GLGYAGGEV---VSKMVKAFRERRDFLVKSFGELEG---VKMSEPQGAFYLFIDFSTYYG 401
E V M R LV + + + Q + F
Sbjct: 303 NTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGL----- 357
Query: 402 SEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKK 460
L + + + RIS A + + + I +
Sbjct: 358 -----------KPEQVERLTKEFSIYMTKD--------GRISVAGVASSNVGYLAHAIHQ 398
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} Length = 403 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Score = 163 bits (413), Expect = 3e-46
Identities = 69/411 (16%), Positives = 161/411 (39%), Gaps = 37/411 (9%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT--PVLIAEAGINAIREGF 125
S + +K S+ + VI LA G P +T I + + + E
Sbjct: 7 FSEKAMLMKASEVRELLKLV-----ETSDVISLAGGLPAPETFPVETIKKIAVEVLEEHA 61
Query: 126 TR---YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEV 182
+ Y G LR A+ +++ + + +I+ G++Q++ +PGD +
Sbjct: 62 DKALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPI 121
Query: 183 IIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLI----LCSPS 238
++ AP +++ + + D + +P + + +L ++ + + + +
Sbjct: 122 VVEAPTYLAAIQAFKYYDPEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQ 181
Query: 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVN 298
NP G + ++ + ++ L++ D Y + Y+ + R + +
Sbjct: 182 NPAGVTMSVDRRKKLLELANEYD-FLIVEDGPYSELRYSGEPTPPIKH-FDDYGRVIYLG 239
Query: 299 GFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 358
FSK G+R+G++A H + + ++ Q + GY E +
Sbjct: 240 TFSKIL-APGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGY-LDEHIP 297
Query: 359 KMVKAFRERRDFLVKSFGE--LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESL 416
K+++ ++ RRD ++++ E EGV+ ++P+G ++ + ++
Sbjct: 298 KIIEFYKPRRDAMLEALEEYMPEGVEWTKPEGGMFVRVTLPEGIDTKL------------ 345
Query: 417 CRYLLDKAQVALVPGDAFGDDT----CIRISYA-ASLTTLQAAVERIKKGL 462
VA VPG+AF +R+++ T++ V R+ + +
Sbjct: 346 MMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETI 396
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Score = 161 bits (407), Expect = 7e-46
Identities = 54/373 (14%), Positives = 128/373 (34%), Gaps = 17/373 (4%)
Query: 98 IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQ 157
+ + DF T I EA + G Y+ E +AI H ++ +
Sbjct: 2 LPFTISDMDFATAPCIIEALNQRLMHGVFGYSRWKND-EFLAAIAHWFSTQHYTAIDSQT 60
Query: 158 ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILP-TRISENFLL 216
++ + + + G+ V+I P + ++ + T + + + ++ +
Sbjct: 61 VVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFC 120
Query: 217 DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 276
D LE+ L + ++L EI + + + V+SDEI+ +++
Sbjct: 121 DMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVW 180
Query: 277 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGAS 336
H ++ + SK+F + Y + G S
Sbjct: 181 GEQPHIPWS--NVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLS 238
Query: 337 SISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QGAFYLFID 395
S S A A + G + + ++ ++ + Q + ++D
Sbjct: 239 SPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLD 298
Query: 396 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD--TCIRISYAASLTTLQA 453
+ +L + L+++ +VA++PG +G++ +R++ + L+
Sbjct: 299 LR----------PLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEK 348
Query: 454 AVERIKKGLLTLR 466
V + + +R
Sbjct: 349 GVAGLINAIRAVR 361
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Score = 162 bits (409), Expect = 9e-46
Identities = 62/431 (14%), Positives = 108/431 (25%), Gaps = 64/431 (14%)
Query: 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAG---EPDFDTPVLI----AEAGIN 119
+L + + P I + +A + L G + + VL AE I+
Sbjct: 3 TLFNNIELLPPDALFGIKQRYGQDQRATK--VDLGIGAYRDDNGKPWVLPSVKAAEKLIH 60
Query: 120 AIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS----ILQAVLAV 175
Y G L S + + D+++ + I +
Sbjct: 61 NDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSK 120
Query: 176 CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLES---KLTEKSRLL 232
P V + P W ++ + P +E LD + K E S +
Sbjct: 121 FFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFV 180
Query: 233 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY-----APATHTSFASL 287
+ NPTG +I + L D Y+
Sbjct: 181 LHSCAHNPTGLDPTSEQWVQIVDA-IASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEK 239
Query: 288 PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAAL 347
F+K M G R+G A I+ TS + I +
Sbjct: 240 LSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPP 299
Query: 348 GLG--------------YAGGEVVSKMVKAFRERRDFLVKSFGELEG---VKMSEPQGAF 390
G + + M + R L +L Q
Sbjct: 300 AYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGM 359
Query: 391 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLT 449
+ F + + + L + V LV R S A +
Sbjct: 360 FSFTGL----------------TPQMVKRLEETHAVYLVAS--------GRASIAGLNQG 395
Query: 450 TLQAAVERIKK 460
++ + I +
Sbjct: 396 NVEYVAKAIDE 406
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Score = 142 bits (358), Expect = 1e-38
Identities = 56/414 (13%), Positives = 106/414 (25%), Gaps = 51/414 (12%)
Query: 73 NAVKPSKTVAITDQATALAQAGVS-VIRLAAG---EPDFDTPVL--IAEAGINAIREGFT 126
+KP I I L G + TP++ + A + T
Sbjct: 3 GNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETT 62
Query: 127 R-YTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVII 184
+ Y +G E + A+ + + S T V + + +P V +
Sbjct: 63 KTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFV 122
Query: 185 PAPFWVSYPEMARIADATPVILPTRISENFLL---DPKVLESKLTEKSRLLILCSPSNPT 241
P W ++ + +E + K + + +L+ NPT
Sbjct: 123 SDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPT 182
Query: 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE-RTLTVNGF 300
G+ + EIA I + L L D Y+ + L L
Sbjct: 183 GANLTLDQWAEIASI-LEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASC 241
Query: 301 SKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSI--SQKAGVAALGLGYAGGE--- 355
SK F + R G + A Q A +
Sbjct: 242 SKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELR 301
Query: 356 -----VVSKMVKAFRERRDFLVKSFGELEG---VKMSEPQGAFYLFIDFSTYYGSEAEGF 407
+ + R+ L +L G + +
Sbjct: 302 ADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGA----------- 350
Query: 408 GKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKK 460
+ + + ++ + +V RI+ A + T+ I +
Sbjct: 351 -----TPEQVKRIKEEFGIYMVGD--------SRINIAGLNDNTIPILARAIIE 391
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} Length = 420 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Score = 137 bits (344), Expect = 2e-36
Identities = 66/452 (14%), Positives = 144/452 (31%), Gaps = 59/452 (13%)
Query: 35 SRYLHNFNLNKSDRRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQATALAQAG 94
+ H+ +N + +S +K S I A A
Sbjct: 2 HHHHHHMVVNLEGK-------------------ISKIGQNMKSSIIREILKFA-----AD 37
Query: 95 VSVIRLAAGEPDFDT--PVLIAEAGINAIREGF---TRYTPNAGTLELRSAICHKLKEEN 149
I G PD +T +AE I + + +Y+ G L+ I L+
Sbjct: 38 KDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMY 97
Query: 150 GLSY-TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPT 208
G++ D ++ + G++Q++ ++ P ++ R A V++P
Sbjct: 98 GITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPL 157
Query: 209 RISENFLLDPKV------LESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 262
L + K+ + + ++ + NP G + I K+
Sbjct: 158 EDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDL 217
Query: 263 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA 322
+V D F L G R+G +AG K F+
Sbjct: 218 FIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSK---VLAPGLRIGMVAGSKEFIR 274
Query: 323 ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM---VKAFRERRDFLVKSFGELE 379
+ + + +I+ + L ++ + + + L + F ++
Sbjct: 275 KIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIP 334
Query: 380 GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG---- 435
GVK + +G ++++ + ++ + Y + +V VPG F
Sbjct: 335 GVKWVKSEGGLFIWLTLPEGF-----------DTWEMFEYAK-RKKVFYVPGRVFKVYDE 382
Query: 436 DDTCIRISYA-ASLTTLQAAVERIKKGLLTLR 466
+R+S+ + ++R+++ +L
Sbjct: 383 PSPSMRLSFCLPPDEKIVEGIKRLREVVLEYG 414
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 366 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 115 bits (288), Expect = 4e-29
Identities = 47/371 (12%), Positives = 99/371 (26%), Gaps = 37/371 (9%)
Query: 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP 155
++ L+ F I E + T + ++ L +
Sbjct: 21 ALYDLSGLSGGFL----IDEKDKALLN---TYIGSSYFAEKVNEYGLKHLGGDEN----- 68
Query: 156 DQILVSNGAKQSILQAVLAVCSPGDEVII--PAPFWVSYPEMARIADATPVILPTRISEN 213
D+ + N +IL +LA+ P + P S +I +A
Sbjct: 69 DKCVGFNRTSSAILATILALK-PKKVIHYLPELPGHPSIERSCKIVNAKYF--------- 118
Query: 214 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 273
+ +K+ + + ++I S + ++ AK+ +V D+
Sbjct: 119 ESDKVGEILNKIDKDTLVIITGSTMDLKVIELEN--FKKVINT-AKNKEAIVFVDDASGA 175
Query: 274 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 333
+ P + + S M G R G +AG K V ++F
Sbjct: 176 RVRLLFNQ------PPALKLGADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIEGTKFGL 229
Query: 334 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 393
A L E + K + + ++ + +
Sbjct: 230 EAQPPLLAGIYR--ALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERT 287
Query: 394 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF-GDDTCIRISYAASLTTLQ 452
+ I+ + LL + + G +RI + +
Sbjct: 288 PTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSR-DAER 346
Query: 453 AAVERIKKGLL 463
I K ++
Sbjct: 347 IDDNYIIKAIV 357
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} Length = 355 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Score = 94.8 bits (234), Expect = 5e-22
Identities = 69/380 (18%), Positives = 121/380 (31%), Gaps = 39/380 (10%)
Query: 83 ITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAIC 142
I + AT L + ++ +A PV + A I+ + + RY P+A L A+
Sbjct: 10 IREPATVLGISPDQLLDFSANINPLGMPVSVKRALIDNL-DCIERY-PDADYFHLHQALA 67
Query: 143 HKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT 202
+ IL NG +SI + ++ P +
Sbjct: 68 RHHQ------VPASWILAGNGETESIFTVASGLKPRRAMIVTPGFAEYGRALAQSGCEIR 121
Query: 203 PVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 262
+ + LT L LC+P+NPTG + + LL IA
Sbjct: 122 RWS---LREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNI 178
Query: 263 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA 322
L+L + + I + + P +W + +K +A+ G RLGY+
Sbjct: 179 NLILDEAFIDFIPHETGFIPALKDNPHIW----VLRSLTKFYAIPGLRLGYLVNSDDAAM 234
Query: 323 ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 382
A + Q S + + V RE ++ +L +
Sbjct: 235 ARMRRQQMPWSVNALAALAGEV-----ALQDSAWQQATWHWLREEGARFYQALCQLPLLT 289
Query: 383 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--DDTCI 440
+ P A YL + L R LL + ++ + + D
Sbjct: 290 V-YPGRANYLLLRCE-------------REDIDLQRRLLTQ-RILIRSCANYPGLDSRYY 334
Query: 441 RISYA--ASLTTLQAAVERI 458
R++ A L AA+ +
Sbjct: 335 RVAIRSAAQNERLLAALRNV 354
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Score = 92.9 bits (229), Expect = 2e-21
Identities = 65/383 (16%), Positives = 129/383 (33%), Gaps = 51/383 (13%)
Query: 78 SKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLEL 137
+ I +A LA E F P + + + R ++ EL
Sbjct: 2 NPLDLIAKRAYPYETEKRDKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYDSPDEEL 61
Query: 138 RSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR 197
I L + + + + V NGA + + + D + P + Y A+
Sbjct: 62 IEKILSYLDTDF---LSKNNVSVGNGAD----EIIYVMMLMFDRSVFFPPTYSCYRIFAK 114
Query: 198 IADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV 257
A + +P + ++ + +P+NPTG V+ + ++ I +
Sbjct: 115 AVGAKFLEVPLTKDLRIPEVNV-------GEGDVVFIPNPNNPTGHVFEREEIERILK-- 165
Query: 258 AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 317
+ L + YE + +E + FSKAF++ R+GY+
Sbjct: 166 --TGAFVALDEAYYEFHGESYVDF------LKKYENLAVIRTFSKAFSLAAQRVGYVVAS 217
Query: 318 KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377
+ F+ A N+++ F S E+ + K E R+ + + E
Sbjct: 218 EKFIDAYNRVRLPFNVSYVSQMFAKVA------LDHREIFEERTKFIVEERERMKSALRE 271
Query: 378 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD 437
+ G ++++ +G F F + E E L +L K VA+ F +
Sbjct: 272 M-GYRITDSRGNFVFV-------------FMEKEEKERLLEHLRTK-NVAVRS---FRE- 312
Query: 438 TCIRISYAASLTTLQAAVERIKK 460
+RI+ + ++
Sbjct: 313 -GVRITIGKREEN-DMILRELEV 333
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} Length = 354 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Score = 87.1 bits (214), Expect = 2e-19
Identities = 60/391 (15%), Positives = 114/391 (29%), Gaps = 52/391 (13%)
Query: 80 TVAITDQA-----------TALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRY 128
TV ITD A +A G + L A E + + +N RY
Sbjct: 1 TVTITDLARENVRNLTPYQSARRLGGNGDVWLNANEYPTAVEFQLTQQTLN-------RY 53
Query: 129 TPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPF 188
P + P+Q+LVS GA + I + A C PG + I+ P
Sbjct: 54 -PECQPKAVIENYAQYAG------VKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPP 106
Query: 189 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKN 248
++ + L + ++ N
Sbjct: 107 TYGMYSVSAETIGVECRTVPTLDNWQLDLQGI---SDKLDGVKVVYVCSPNNPTGQLINP 163
Query: 249 LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 308
+ + ++V + E A A + + SKAFA+ G
Sbjct: 164 QDFRTLLELTRGKAIVVADEAYIEFCPQAS-----LAGWLAEYPHLAILRTLSKAFALAG 218
Query: 309 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 368
R G+ + + K+ + + A + G + + V R
Sbjct: 219 LRCGFTLANEEVINLLMKVIAPYPLSTPVADIAAQALSPQ----GIVAMRERVAQIIAER 274
Query: 369 DFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL 428
++L+ + E+ V+ Y+ F + S ++ + L D+ +
Sbjct: 275 EYLIAALKEIPCVEQVFDSETNYILARF--------------KASSAVFKSLWDQGIILR 320
Query: 429 VPGDAFGDDTCIRISYAASLTTLQAAVERIK 459
C+RI+ Q ++ ++
Sbjct: 321 DQNKQPSLSGCLRITVGTR-EESQRVIDALR 350
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.7 bits (138), Expect = 1e-09
Identities = 47/368 (12%), Positives = 106/368 (28%), Gaps = 38/368 (10%)
Query: 126 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV---CSPGDEV 182
+ ++ ++ +++ + + G+ +V S+ L + +
Sbjct: 84 PKAAGSSLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYI 143
Query: 183 IIPAPFWVSYPEMARIADATPVILPTRI-SENFLLDPKVLESKL----TEKSRLLILCSP 237
I P S + A PV++ + + D K +E+K+ E L +
Sbjct: 144 IWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTA 203
Query: 238 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL-- 295
L+E+A I A + +I + A +S +
Sbjct: 204 CFAPRVPDR---LEELAVICANY--------DIPHVVNNAYGLQSSKCMHLIQQGARVGR 252
Query: 296 ---TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL--G 350
V K F + + F+ +K+ S + S+ + +LG
Sbjct: 253 IDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGY 312
Query: 351 YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI 410
+ +M + L ++ E P ++ G +
Sbjct: 313 RKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSM 372
Query: 411 ENSESL-CRYLLDKAQVALVPGDAFGD---------DTCIRISYAASLTT--LQAAVERI 458
+ + + V V G F + + A + + ++R+
Sbjct: 373 LFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRL 432
Query: 459 KKGLLTLR 466
K L +R
Sbjct: 433 DKCLNIVR 440
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Score = 45.7 bits (107), Expect = 7e-06
Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 5/108 (4%)
Query: 155 PDQILVSNGAKQSILQAVLAVC----SPGDEVIIPAPFWVSYPEMARIADATPV-ILPTR 209
P +I+ ++GA +S A+ G +I + + R + +
Sbjct: 65 PREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLA 124
Query: 210 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV 257
N ++D K LE+ + + + L+ + +N G V + E+ R
Sbjct: 125 PQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRAR 172
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 471 | |||
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 100.0 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 100.0 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 100.0 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 100.0 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 100.0 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 100.0 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 100.0 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 100.0 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 100.0 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 100.0 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 100.0 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 100.0 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 100.0 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 100.0 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 100.0 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 100.0 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 100.0 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 100.0 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 100.0 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 100.0 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 100.0 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 100.0 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 100.0 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.96 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.96 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.95 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.95 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.95 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.95 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.93 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.93 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.91 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.9 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.89 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.88 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.87 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.85 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.85 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.84 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.83 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.83 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.82 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.82 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.81 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.81 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.81 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.8 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.8 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.8 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.8 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.79 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.79 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.78 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.78 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.78 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.78 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.77 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.76 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.75 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.75 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.75 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.75 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.75 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.74 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.74 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.73 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.72 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.72 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.72 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.71 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.69 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.68 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.67 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.65 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.63 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.61 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.52 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.39 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.31 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.27 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 99.21 |
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=7.2e-69 Score=538.94 Aligned_cols=386 Identities=45% Similarity=0.792 Sum_probs=360.0
Q ss_pred ccccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHH
Q 012095 66 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKL 145 (471)
Q Consensus 66 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~ 145 (471)
|.++.+++.++++++.++.+++++++..|+++|+|+.|+|++++|+.+++++.+++.++.++|++..|.++||+++++++
T Consensus 1 m~~~~~~~~~~~s~~~~i~~~a~~~~~~g~~vi~l~~G~p~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~ 80 (388)
T d1j32a_ 1 MKLAARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKL 80 (388)
T ss_dssp CCCCHHHHTSCCCSSTTTHHHHHHHHTTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHH
T ss_pred CchhhHhhcCCcCHHHHHHHHHHHHHHCCCCeEECCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHH
Confidence 45788999999999888989999999999999999999999999999999999999888899999999999999999999
Q ss_pred HHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhh
Q 012095 146 KEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL 225 (471)
Q Consensus 146 ~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l 225 (471)
.+.+|.++++++|++|+|+++++..+++++++|||+|++++|+|++|...++..|++++.++...+++|.+|++++++++
T Consensus 81 ~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~ 160 (388)
T d1j32a_ 81 QRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAI 160 (388)
T ss_dssp HHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHC
T ss_pred HHhcccCCCCceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred ccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCC-CCCceEEEecCCccc
Q 012095 226 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG-MWERTLTVNGFSKAF 304 (471)
Q Consensus 226 ~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~ 304 (471)
++++++++++|||||||.+++.+++++|+++|++| +++||+||+|.++.+++....++..... ..+++++++||||.|
T Consensus 161 ~~~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~-~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~ 239 (388)
T d1j32a_ 161 TPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEA-GLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTY 239 (388)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTT
T ss_pred CCCCeEEEECCCCCCCCcccchhhhhhhhcccccC-CeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhh
Confidence 99999999999999999999999999999999999 9999999999999998776666655432 236899999999999
Q ss_pred CccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeee
Q 012095 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (471)
Q Consensus 305 g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~ 384 (471)
+++|+|+||+++++++++.+.+.......+++.+.|.++...+.. .++|+++.++.|+++++.+.+.|++++|+.+.
T Consensus 240 ~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 316 (388)
T d1j32a_ 240 AMTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYEN---SQDCVQEMLAAFAERRRYMLDALNAMPGLECP 316 (388)
T ss_dssp TCTTTCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHS---CSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCC
T ss_pred hcchhHeEEEEECHHHHHHHHHhhhhccccccHHHHHHHhhcccc---hHHHHHHHHHHHHHHHHHHHHHHHhCCCCEec
Confidence 999999999999999999999888878888999999999998886 57899999999999999999999998899999
Q ss_pred CCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012095 385 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 385 ~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~~ 464 (471)
.|+||||+|+++++.. .++.+++++|++++||.+.||+.|+.++|+|++++.++++|+++++||+++++.
T Consensus 317 ~p~gg~~l~~~l~~~~----------~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~~~~e~l~~al~rl~~~l~~ 386 (388)
T d1j32a_ 317 KPDGAFYMFPSIAKTG----------RSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFLHG 386 (388)
T ss_dssp CCCBTTEECCBCGGGT----------CCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEECCCCC----------CCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 9999999999998642 378899999998889999999999999999999999999999999999999987
Q ss_pred h
Q 012095 465 L 465 (471)
Q Consensus 465 ~ 465 (471)
+
T Consensus 387 l 387 (388)
T d1j32a_ 387 I 387 (388)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=5.4e-67 Score=524.44 Aligned_cols=379 Identities=42% Similarity=0.702 Sum_probs=346.9
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~ 147 (471)
+|+|+..++|+++.++.+++++++..|+++|+|+.|+|++++|+.+++++.+++.++.++|++..|.++||+++++++.+
T Consensus 4 ~~~r~~~~~~s~~~~i~~~a~~~~~~G~~vi~l~~g~p~~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~ 83 (382)
T d1b5pa_ 4 LSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRR 83 (382)
T ss_dssp CCHHHHHCCCCHHHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCCCeEECCCCCCCCCCCHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhh
Confidence 78999999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred HhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc
Q 012095 148 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 227 (471)
Q Consensus 148 ~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~ 227 (471)
.+|+++++++|++|+|+++++..++++++++||.|++++|+|++|...++.+|++++.+++.++++|.+|++++++++++
T Consensus 84 ~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~ 163 (382)
T d1b5pa_ 84 ENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP 163 (382)
T ss_dssp TTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCT
T ss_pred hcccccccccceecCCHHHHHHHHHHHhCCCCCEEEECCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCcc
Q 012095 228 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307 (471)
Q Consensus 228 ~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 307 (471)
+++++++||||||||.+++.+++++|+++|++| +++||+||+|.++.|++....+.. . ..+++|+++||||.|+++
T Consensus 164 ~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~-~--~~~~~i~~~s~SK~~~~~ 239 (382)
T d1b5pa_ 164 RTKALVVNSPNNPTGAVYPKEVLEALARLAVEH-DFYLVSDEIYEHLLYEGEHFSPGR-V--APEHTLTVNGAAKAFAMT 239 (382)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBSSSCCCCGGG-T--CTTTEEEEEESTTTTTCG
T ss_pred CCeEEEECCCCCCcchhCCHHHHHHHHHHHHHc-CeEEEEEccccceecCCCCCCHHH-c--CCCCEEEEecchhhccCc
Confidence 999999999999999999999999999999999 999999999999999875444332 2 247899999999999999
Q ss_pred chhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC
Q 012095 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (471)
Q Consensus 308 G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~ 387 (471)
|+|+||+++++++++.+.+.......+++.+.|.++..++........++...++.|+++++.+.+.+.+. |+++..|+
T Consensus 240 GlR~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~p~ 318 (382)
T d1b5pa_ 240 GWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLKAVRPS 318 (382)
T ss_dssp GGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCS
T ss_pred HhheEEEEECHHHHHHHHHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhc-CCeEecCC
Confidence 99999999999999999998888888899999988888776532235678888999999999999999887 89999999
Q ss_pred cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHH
Q 012095 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGL 462 (471)
Q Consensus 388 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l 462 (471)
||||+|+++++.. .+...+.+.|+++ ||.+.||+.|+.++++|++++.++|+|+++++||++++
T Consensus 319 gg~~~~~~~~~~~----------~~~~~~~~~l~e~-gV~v~PG~~F~~~~~iRis~~~~~e~l~~al~rl~~~L 382 (382)
T d1b5pa_ 319 GAFYVLMDTSPIA----------PDEVRAAERLLEA-GVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARVL 382 (382)
T ss_dssp BTTEEEEECTTTC----------SSHHHHHHHHHHT-TEECEESGGGTCTTEEEEECCSCHHHHHHHHHHGGGGC
T ss_pred ceEEEeEeCCCCC----------CCHHHHHHHHHHC-CEEEEeCcccCCCCeEEEEEcCCHHHHHHHHHHHHHhC
Confidence 9999999996531 2677788877765 99999999999999999999999999999999998763
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.9e-64 Score=506.89 Aligned_cols=382 Identities=42% Similarity=0.656 Sum_probs=347.5
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~ 147 (471)
+|.|++.++++.++++.+.+. .++++|+|+.|+|++++|+.+++++.+++.++.++|+|..|.++||++|++++.+
T Consensus 2 ~s~~~~~~~~s~ir~~~~~~~----~~~dvi~l~~g~p~~~~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~ 77 (388)
T d1gdea_ 2 LSDRLELVSASEIRKLFDIAA----GMKDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKK 77 (388)
T ss_dssp HHHHHHHSCCCHHHHHHHHHH----HCTTCEECCCCSCCSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHH
T ss_pred hhhhhhhCCccHHHHHHHHHh----CCCCeEECCCCCCCCCCCHHHHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHh
Confidence 467888899999988877554 3567999999999999999999999999988889999999999999999999988
Q ss_pred HhCCC-CCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc
Q 012095 148 ENGLS-YTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 226 (471)
Q Consensus 148 ~~g~~-~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~ 226 (471)
.++.. ..+++|++|+|+++++..++.++++|||.|++++|+|+.|...++..|++++.+|++.+++|.+|+++|++.++
T Consensus 78 ~~~~~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~ 157 (388)
T d1gdea_ 78 QNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVT 157 (388)
T ss_dssp HHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCC
T ss_pred hccccCCChheeeeccCcchHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHHHHHHhCc
Confidence 77754 45578999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCc
Q 012095 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (471)
Q Consensus 227 ~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~ 306 (471)
++++++++||||||||.+++.+++++|+++|++| +++||+||+|.++.+++....++..+....+++|+++||||.||+
T Consensus 158 ~~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~-~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 236 (388)
T d1gdea_ 158 DKTRALIINSPCNPTGAVLTKKDLEEIADFVVEH-DLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAM 236 (388)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTC
T ss_pred cCCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHc-CCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccC
Confidence 9999999999999999999999999999999999 999999999999999877777777777667899999999999999
Q ss_pred cchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC
Q 012095 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (471)
Q Consensus 307 ~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p 386 (471)
+|+|+||+++++++++.+.........+++.+.|.++..++..+.. .+++...++.++++++.+.+.|... ++.+..|
T Consensus 237 ~GlR~G~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~p 314 (388)
T d1gdea_ 237 TGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERS-WKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKP 314 (388)
T ss_dssp GGGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCCC
T ss_pred ccccEEEEEeeccchhhhhhccccccccccccchhhHHHHHhhccc-hhHHHHHHHHHHHhhhhhhhhhhhc-cccccCC
Confidence 9999999999999999999998888999999999999999975322 4567888899999999999999887 7888899
Q ss_pred CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012095 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 387 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~l~~ 464 (471)
+||+|+|+++++.. .++.+++++|++++||.++||+.|+. ++|+||+++.++|+|++++++|++++++
T Consensus 315 ~gg~fl~~~l~~~~----------~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~~~~e~l~~al~rL~~~l~e 384 (388)
T d1gdea_ 315 KGAFYIFPRIRDTG----------LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLKE 384 (388)
T ss_dssp CBTTEECCBCGGGT----------CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCC----------CCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 99999999997531 27889999999988999999999985 5899999999999999999999999998
Q ss_pred hC
Q 012095 465 LR 466 (471)
Q Consensus 465 ~~ 466 (471)
.+
T Consensus 385 ~k 386 (388)
T d1gdea_ 385 RK 386 (388)
T ss_dssp TT
T ss_pred cC
Confidence 76
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.6e-63 Score=499.59 Aligned_cols=383 Identities=30% Similarity=0.511 Sum_probs=334.1
Q ss_pred ccccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCC---CCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHH
Q 012095 66 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP---DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAIC 142 (471)
Q Consensus 66 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~---~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia 142 (471)
+..|+|+..++ +.++++...++++++.|+++|+|+.|+| +|++|+.+++++.+++.++.++|++..|.++||++|+
T Consensus 2 ~~~s~r~~~~~-~~ir~i~~~a~~l~~~G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia 80 (395)
T d1xi9a_ 2 IRASKRALSVE-YAIRDVVLPARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIV 80 (395)
T ss_dssp CCCCHHHHTCC-C-------CHHHHHHTTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHH
T ss_pred ccchhccccCc-HHHHHHHHHHHHHHHCCCCeEECCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHH
Confidence 34677787775 5688888888999999999999999997 7889999999999999888889999999999999999
Q ss_pred HHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHH
Q 012095 143 HKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLE 222 (471)
Q Consensus 143 ~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~ 222 (471)
+++++.+|+++++++|++|+|+++++.+++.+++++||+|++++|+|+.|...++..|++++.+++..+++|.+|+++++
T Consensus 81 ~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~ 160 (395)
T d1xi9a_ 81 EREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIR 160 (395)
T ss_dssp HHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHH
T ss_pred HhhhhcccccccccccccccccchhhhhhhhhhcCCCCEEEEcCCccccchhhhhhcCCEEEEEeccccccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred hhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCc
Q 012095 223 SKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK 302 (471)
Q Consensus 223 ~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 302 (471)
+.+.+++++++++|||||||.+++.+++++|+++|++| +++||+||+|.++.|++.. .+...+.. .+++|+++||||
T Consensus 161 ~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~-~~~ii~De~y~~~~~~~~~-~~~~~~~~-~~~vi~~~S~SK 237 (395)
T d1xi9a_ 161 KKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEY-EIPVISDEIYDLMTYEGEH-ISPGSLTK-DVPVIVMNGLSK 237 (395)
T ss_dssp HHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCCEEEECTTTTCBSSSCC-CCHHHHCS-SSCEEEEEESTT
T ss_pred HhhcccccEEEecCCCCCccchhhHHHHHHHHhhhhhc-CeeEEeccccccccccccc-cchhhcCC-CCCEEEEeCcch
Confidence 99999999999999999999999999999999999999 9999999999999887543 33333333 578999999999
Q ss_pred ccCccchhheeeEc--CHHHHHHHHH---HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC
Q 012095 303 AFAMTGWRLGYIAG--PKHFVAACNK---IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377 (471)
Q Consensus 303 ~~g~~G~R~G~v~~--~~~~i~~l~~---~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 377 (471)
.|+++|||+||+++ +...+..+.+ .......+++.++|.++..++.. .++|+++.++.|+++++.+.+.|.+
T Consensus 238 ~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~ 314 (395)
T d1xi9a_ 238 VYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTG---PMDYLKEYMKKLKERRDYIYKRLNE 314 (395)
T ss_dssp TTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHS---CCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcccchhhcEeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999875 3333333332 23345667899999999999986 4789999999999999999999999
Q ss_pred CCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHH
Q 012095 378 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAV 455 (471)
Q Consensus 378 ~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~ 455 (471)
++++.+..|+||||+|++++... ..++.+++.+|++++||.+.||+.|+. ++|+||+++.+.|++++++
T Consensus 315 ~~~~~~~~p~gg~~~~~~l~~~~---------~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~~~~e~l~eal 385 (395)
T d1xi9a_ 315 IPGISTTKPQGAFYIFPKIEVGP---------WKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAM 385 (395)
T ss_dssp STTEECCCCCBSSEECCEECSCS---------CSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHH
T ss_pred CCCceecCCCeeEEEeEECCCCC---------CCCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEecCCHHHHHHHH
Confidence 97788999999999999997531 136888999999888999999999986 6899999998999999999
Q ss_pred HHHHHHHHh
Q 012095 456 ERIKKGLLT 464 (471)
Q Consensus 456 ~~l~~~l~~ 464 (471)
+||++++++
T Consensus 386 ~rl~~~l~e 394 (395)
T d1xi9a_ 386 DRFEKFMKE 394 (395)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999875
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.4e-61 Score=483.82 Aligned_cols=374 Identities=37% Similarity=0.659 Sum_probs=341.5
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~ 147 (471)
+|+|+.+++.+.+.++.+.+++++++|+++|+|+.|+|++++|+.+.+++.+++.++..+|++..|.++||+++++++++
T Consensus 1 ~~~r~~~~~~~~~~~~~~~a~~~~~~G~~vI~l~~G~p~~~~p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~ 80 (375)
T d1o4sa_ 1 VSRRISEIPISKTMELDAKAKALIKKGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGE 80 (375)
T ss_dssp CCHHHHHSCCCSSHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHH
T ss_pred CchhhhhCCCCHHHHHHHHHHHHHHCCCCeEECCCcCCCCCCCHHHHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhh
Confidence 46788899999999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred HhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc
Q 012095 148 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 227 (471)
Q Consensus 148 ~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~ 227 (471)
.+|.++++++|++|+|+++++..++++++++||.|++++|+|+.|...+...|...+.++.+.++++.+|.+.++....+
T Consensus 81 ~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (375)
T d1o4sa_ 81 RYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVG 160 (375)
T ss_dssp HHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCT
T ss_pred ccccccccccccccCcHHHHHHHHHHHHhCCCCEEEEccCccccchhhhhccccccccccccccccccchhHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999888
Q ss_pred CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCcc
Q 012095 228 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307 (471)
Q Consensus 228 ~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 307 (471)
++++++++|||||||.+++.+++++|+++|++| +++||+||+|.++.+++.... ........+++|+++||||.|+++
T Consensus 161 ~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~~i~~~S~SK~~~l~ 238 (375)
T d1o4sa_ 161 KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKR-NFYIISDEVYDSLVYTDEFTS-ILDVSEGFDRIVYINGFSKSHSMT 238 (375)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTSBCSSCCCC-HHHHCSSSTTEEEEEESTTTTTCG
T ss_pred CccEEEEeCCCCCccCCCCHHHHHHHHHhHHHc-CCceehHhhhccccccccccc-cccccCCCCCEEEEeechhhccCC
Confidence 999999999999999999999999999999999 999999999999887654433 333445578999999999999999
Q ss_pred chhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC
Q 012095 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (471)
Q Consensus 308 G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~ 387 (471)
|+|+||+++++++++.+.........+.+...+.++...++ .+....++.++++++.+.+.|++. |+++..|+
T Consensus 239 G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~r~~~~~~~l~~~-g~~~~~p~ 311 (375)
T d1o4sa_ 239 GWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALE------VDNSYMVQTFKERKNFVVERLKKM-GVKFVEPE 311 (375)
T ss_dssp GGCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTT------CCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCS
T ss_pred ccccccccccccchhhhhhhhccccccccccchhhhhhhcc------cchhhhHHHHHHHHHHHHHHHHhc-CceEecCC
Confidence 99999999999999999988888887788888776665544 334556778999999999999988 99999999
Q ss_pred cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012095 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLL 463 (471)
Q Consensus 388 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~~l~ 463 (471)
||||+|++++. ++.+++.+|++++||.++||+.|+.++||||+++.++++|++++++|+++++
T Consensus 312 gg~f~~~~~~~-------------~~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~~~~~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 312 GAFYLFFKVRG-------------DDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFLN 374 (375)
T ss_dssp BSSEEEEECSS-------------CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred ccEEEEEECCC-------------CHHHHHHHHHHhCCEEEEEccccCCCCeEEEEEcCCHHHHHHHHHHHHHHhc
Confidence 99999999974 5778899999888999999999999999999999999999999999999875
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=100.00 E-value=7.5e-61 Score=485.30 Aligned_cols=391 Identities=25% Similarity=0.447 Sum_probs=343.8
Q ss_pred ccccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcC---CCCCCCCCCCHHHHHHHH
Q 012095 66 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG---FTRYTPNAGTLELRSAIC 142 (471)
Q Consensus 66 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~---~~~Y~~~~G~~~lr~~ia 142 (471)
+.++.|++.++++.+.++.+.+.. .++|+|+.|+|++++|+.+++++.+++.+. .++|++..|.++||++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~I~L~~G~Pd~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA 76 (418)
T d2r5ea1 2 FDLPKRYQGSTKSVWVEYIQLAAQ-----YKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALS 76 (418)
T ss_dssp CCCCGGGTTCCCCHHHHHHHHHHH-----HCCEECSSSCCSSCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHH
T ss_pred CchhhhhcCCCCCHHHHHHHHhcC-----CCCEEccCCCCCCCCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHH
Confidence 347889999999988888765543 368999999999999999999999998653 467999999999999999
Q ss_pred HHHHHHhCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCC--------C
Q 012095 143 HKLKEENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE--------N 213 (471)
Q Consensus 143 ~~~~~~~g~~~~~-~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~--------~ 213 (471)
+++++.+|.++++ ++|++|+|+++++..+++++++|||.|++++|+|++|...+...|++++.|++++++ .
T Consensus 77 ~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~ 156 (418)
T d2r5ea1 77 KLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSAD 156 (418)
T ss_dssp HHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEESCCSSCEEGGG
T ss_pred HHHHHHhCCCCCccceEEEcCCCchhhhhhhhhccccccceeccccccchhhHHHHHcCCeEEEEEecccccccchhhhh
Confidence 9999999999885 899999999999999999999999999999999999999999999999999987643 3
Q ss_pred CcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCc
Q 012095 214 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 293 (471)
Q Consensus 214 ~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~ 293 (471)
|.++++.+.+...++++++++|+||||||.+++.+++++|+++|++| +++||+||+|.++.+++....++..++...++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~-~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~ 235 (418)
T d2r5ea1 157 WVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKW-NVLCVSDEVYEHMVFEPFEHIRICTLPGMWER 235 (418)
T ss_dssp EECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSTTTGGG
T ss_pred hhhhHHHHhhhhhccccceecCCcCccccccccHHHHHHHhhhhhcC-CeeeecccchhhhccCCCccccccccccccce
Confidence 67889999998888999999999999999999999999999999999 99999999999999988777777777777789
Q ss_pred eEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhcc----CCChHHHHHHHHHHHHHHH
Q 012095 294 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLG----YAGGEVVSKMVKAFRERRD 369 (471)
Q Consensus 294 ~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~----~~~~~~~~~~~~~~~~~r~ 369 (471)
+++++||||.++++|+|+||+++++++++.+.+.......+.+++.|.++...+... ...++|+.++++.|+.+|+
T Consensus 236 ~i~~~S~SK~~~~pGlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ 315 (418)
T d2r5ea1 236 TITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRD 315 (418)
T ss_dssp EEEEEEHHHHTTCGGGCCEEEESCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHH
T ss_pred eeeeecCCccccCCCcccccccccchhhhhhhhcccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999888888889999998887776531 1235789999999999999
Q ss_pred HHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcc-cCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------CCcEE
Q 012095 370 FLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEA-EGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------DTCIR 441 (471)
Q Consensus 370 ~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~-------~~~iR 441 (471)
.+.+.|+++ |+++..|+||||+|++++....... .......++.+|+++|++++||.++||+.|+. ++|||
T Consensus 316 ~l~~~L~~~-g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iR 394 (418)
T d2r5ea1 316 YMASFLAEV-GMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVR 394 (418)
T ss_dssp HHHHHHHHT-TCEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEE
T ss_pred hHHhhHhhc-CCcccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEE
Confidence 999999998 9999999999999999875422110 01111236789999999989999999999975 36899
Q ss_pred EEeecCHHHHHHHHHHHHHHHH
Q 012095 442 ISYAASLTTLQAAVERIKKGLL 463 (471)
Q Consensus 442 is~~~~~e~i~~~~~~l~~~l~ 463 (471)
|||+.++|+|++++++|++++.
T Consensus 395 is~~~~~e~l~~a~~rl~~~lg 416 (418)
T d2r5ea1 395 YCFFKKDENLQKAAEILRKWKG 416 (418)
T ss_dssp EECCSCHHHHHHHHHHHHHHHT
T ss_pred EEecCCHHHHHHHHHHHHHHHc
Confidence 9998899999999999999874
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.8e-60 Score=478.65 Aligned_cols=389 Identities=28% Similarity=0.507 Sum_probs=340.8
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcC--CCCCCCCCCCHHHHHHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG--FTRYTPNAGTLELRSAICHKL 145 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~~ 145 (471)
.++|++.++++++.++.+.+ .++++|+|+.|+|++++|+.+++++.+++.++ .++|++..|.++||++|++++
T Consensus 3 ~~~r~~~~~~~~~~~~~~~~-----~~~dvI~l~~G~p~~~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~ 77 (418)
T d1w7la_ 3 QARRLDGIDYNPWVEFVKLA-----SEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFF 77 (418)
T ss_dssp SCGGGTTCCCCTHHHHHHHH-----HTSCCEECCCCSCSSCCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHH
T ss_pred cCccccCCCCCHHHHHHHHh-----CCCCCEECCCCCCCCCCCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHH
Confidence 35688888999887765543 45789999999999999999999999998764 457999999999999999999
Q ss_pred HHHhCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCC----------CCCC
Q 012095 146 KEENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI----------SENF 214 (471)
Q Consensus 146 ~~~~g~~~~~-~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~----------~~~~ 214 (471)
++.+|.++++ ++|++|+|++++|..++++++++||.|++++|+|+.|...+...|++++.++..+ +.+|
T Consensus 78 ~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~ 157 (418)
T d1w7la_ 78 GELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNW 157 (418)
T ss_dssp HHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCSEEGGGE
T ss_pred HHHhCCCCCcccceeeccCcHHHHHHHHHhhccCCceeeccccccchhHHHHHHcCCEeeccccccccccccccccccCc
Confidence 9999998885 7899999999999999999999999999999999999999999999999998764 3457
Q ss_pred cCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCce
Q 012095 215 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 294 (471)
Q Consensus 215 ~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~ 294 (471)
.+|.+++....++++++|++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++....++.+++...+++
T Consensus 158 ~~d~~~~~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~-~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~ 236 (418)
T d1w7la_ 158 QLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQH-DVVCITDEVYQWMVYDGHQHISIASLPGMWERT 236 (418)
T ss_dssp ECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGE
T ss_pred ccchhhhhccccccccceeccCcCCcccccccHHHHHHHHHHHHhc-CCCchhhhhhHHhhcCCCCCCCHHHcccccccc
Confidence 7899999988888899999999999999999999999999999999 999999999999999887777787887767899
Q ss_pred EEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccC----CChHHHHHHHHHHHHHHHH
Q 012095 295 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGY----AGGEVVSKMVKAFRERRDF 370 (471)
Q Consensus 295 i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~----~~~~~~~~~~~~~~~~r~~ 370 (471)
+++.||||.++++|+|+||+++++++++.+.+.......+++.+.|.++..+|.... ...+++..+++.|+++|+.
T Consensus 237 i~~~S~SK~~~~pG~RvG~~v~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~ 316 (418)
T d1w7la_ 237 LTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDH 316 (418)
T ss_dssp EEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHH
T ss_pred ceecccCccccCCCCcccccccchhhhhhhccccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhh
Confidence 999999999999999999999999999999999988889999999999988886421 1246788999999999999
Q ss_pred HHHHhcCCCCCeeeCCCcceEEeEecCCccCC--cccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------CCcEE
Q 012095 371 LVKSFGELEGVKMSEPQGAFYLFIDFSTYYGS--EAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------DTCIR 441 (471)
Q Consensus 371 l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~-------~~~iR 441 (471)
+.+.|.++ |+++.+|+||||+|+++++.... ...+.....++.+++++|++++||.++||+.|+. ++|||
T Consensus 317 l~~~L~~~-g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iR 395 (418)
T d1w7la_ 317 MIRSLQSV-GLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIR 395 (418)
T ss_dssp HHHHHHTT-TCEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEE
T ss_pred hhhhhhhc-CCcccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEE
Confidence 99999998 99999999999999998753211 0111111124788999999999999999999973 47999
Q ss_pred EEeecCHHHHHHHHHHHHHHHH
Q 012095 442 ISYAASLTTLQAAVERIKKGLL 463 (471)
Q Consensus 442 is~~~~~e~i~~~~~~l~~~l~ 463 (471)
||++.+++++++++++|+++..
T Consensus 396 is~~~~~~~l~~a~~rl~~~~~ 417 (418)
T d1w7la_ 396 FCFVKDEATLQAMDEKLRKWKV 417 (418)
T ss_dssp EECCCCHHHHHHHHHHHHHHHC
T ss_pred EEEcCCHHHHHHHHHHHHHHhc
Confidence 9999899999999999988753
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=1.1e-59 Score=476.01 Aligned_cols=391 Identities=23% Similarity=0.379 Sum_probs=324.4
Q ss_pred ccccccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCC----hHHHHHHHHHHHHc-CCCCCCCCCCCHHHH
Q 012095 64 VDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT----PVLIAEAGINAIRE-GFTRYTPNAGTLELR 138 (471)
Q Consensus 64 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~----p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr 138 (471)
||..++... ....++++.+.+.++. ...+.++|+|+.|+|++++ ++.+++++.+++.. ..++|+|..|.++||
T Consensus 1 ~~~~~~~~~-~~~~~pir~~~~~~~~-~~~~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR 78 (412)
T d1bw0a_ 1 WDVSMSNHA-GLVFNPIRTVSDNAKP-SPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAR 78 (412)
T ss_dssp CCCCCCHHH-HTCCCHHHHHHHTCCC-CCSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHH
T ss_pred CCCChhhcc-cCCccHHHHHHHhcCC-CCCCCCcEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHH
Confidence 667776553 4445666665543321 1234579999999988654 46788888887765 356899999999999
Q ss_pred HHHHHHHHHHhC------CCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCC
Q 012095 139 SAICHKLKEENG------LSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE 212 (471)
Q Consensus 139 ~~ia~~~~~~~g------~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~ 212 (471)
++++++++++++ .++++++|++|+|+++++..+++++++|||+|++++|+|+.|...++.+|++++.+|+++++
T Consensus 79 eaia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~ 158 (412)
T d1bw0a_ 79 EAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPEN 158 (412)
T ss_dssp HHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGG
T ss_pred HHHHHHHHHhcCcccccCCCCCCCeEEEecccccchhhhhhhhhccccceeeeeccchhhhhhhhccCcccccccccccc
Confidence 999999998864 45788999999999999999999999999999999999999999999999999999999888
Q ss_pred CCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCC---C
Q 012095 213 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP---G 289 (471)
Q Consensus 213 ~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~---~ 289 (471)
+|.++++.+++...+++++++++|||||||.+++.+++++|+++|++| +++||+||+|.++.|++..+.+..... .
T Consensus 159 ~~~~~~~~l~~~~~~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~-~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~ 237 (412)
T d1bw0a_ 159 DWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEEL-RLPLFSDEIYAGMVFKGKDPNATFTSVADFE 237 (412)
T ss_dssp TTEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCCEEEECTTTTCBCCSSCTTCCCCCTTSSC
T ss_pred ccchhhHHHHhhhhccccccccccccccccccchhhhccccccccccC-CeeeechhhHHHhccCCCCCccccccccccc
Confidence 999999999999999999999999999999999999999999999999 999999999999999876544433221 2
Q ss_pred CCCceEEEecCCcccCccchhheeeEcCH------HHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHH
Q 012095 290 MWERTLTVNGFSKAFAMTGWRLGYIAGPK------HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (471)
Q Consensus 290 ~~~~~i~~~S~SK~~g~~G~R~G~v~~~~------~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~ 363 (471)
...++++++||||.++++|||+||+++++ .++....+.... ..+++.+.|.++...+... .++|+.++++.
T Consensus 238 ~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 314 (412)
T d1bw0a_ 238 TTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGML-VCGPCTVVQAALGEALLNT--PQEHLDQIVAK 314 (412)
T ss_dssp CSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHH-HTCSCHHHHHHHHHHHHSS--CHHHHHHHHHH
T ss_pred cccccccccccCccCccCCCCcccccccchhhcchhhhhhhcccccc-ccCCchhhhhhcccccccc--cccccccccch
Confidence 24578999999999999999999999864 344444444333 3345666666665555432 47899999999
Q ss_pred HHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEE
Q 012095 364 FRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 443 (471)
Q Consensus 364 ~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis 443 (471)
|+++|+.+.+.|.+.+|+.+..|+||||+|++++.... ....++.+|+++|++++||.++||+.|+.++|||||
T Consensus 315 ~~~~r~~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~~------~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis 388 (412)
T d1bw0a_ 315 IEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKY------RDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLT 388 (412)
T ss_dssp HHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGB------SSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEE
T ss_pred hHHHHHHHHHHHHHhcCceecCCCCceEEEEeCChhhc------CCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEE
Confidence 99999999999998879999999999999999874211 112378899999999889999999999999999999
Q ss_pred eecCHHHHHHHHHHHHHHHHhhC
Q 012095 444 YAASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 444 ~~~~~e~i~~~~~~l~~~l~~~~ 466 (471)
++.++++++++++||++++++..
T Consensus 389 ~~~~~e~l~eal~Rl~~~l~~~~ 411 (412)
T d1bw0a_ 389 TTRPVEVYREAVERIKAFCQRHA 411 (412)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHB
T ss_pred EcCCHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999998753
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.3e-59 Score=464.70 Aligned_cols=372 Identities=28% Similarity=0.488 Sum_probs=332.9
Q ss_pred cccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHH
Q 012095 69 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEE 148 (471)
Q Consensus 69 s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~ 148 (471)
++++..+..+.+.++.+.++ ++++|+|+.|+|++++|+.+++++.+++.++.++|++..|.++||++|++++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~a~-----~~~~i~l~~G~Pd~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~ 79 (382)
T d1u08a_ 5 QSKLPQLGTTIFTQMSALAQ-----QHQAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERL 79 (382)
T ss_dssp CCSCCCCCCCHHHHHHHHHH-----HTTCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHH
T ss_pred hhhCCCCCCcHHHHHHHHhc-----cCCCEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHH
Confidence 34556666665666655543 3579999999999999999999999999888899999999999999999999999
Q ss_pred hCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc
Q 012095 149 NGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 227 (471)
Q Consensus 149 ~g~~~~~~-~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~ 227 (471)
+|++++++ +|++|+|+++++..++++++++||.|++++|+|+.+...+...|+..+.++.+ ++++.+|++++++..++
T Consensus 80 ~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~~~~ 158 (382)
T d1u08a_ 80 YGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQ-PPHFRVDWQEFAALLSE 158 (382)
T ss_dssp HSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECC-TTTCCCCHHHHHHHCCT
T ss_pred hCCCCCCCceEEeccchHHHHHHHHhhcccccceEEEecccccchhhhhhhccccceecccc-cccccCCHHHHhhhhcc
Confidence 99988876 59999999999999999999999999999999999999999999998888876 46678999999999999
Q ss_pred CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCcc
Q 012095 228 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307 (471)
Q Consensus 228 ~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 307 (471)
++++++++|||||||.+++.+++++|+++|+++ +++++.|+.|..+.+.+.........+...+++|++.|+||.++++
T Consensus 159 ~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~-~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~p 237 (382)
T d1u08a_ 159 RTRLVILNTPHNPSATVWQQADFAALWQAIAGH-EIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMT 237 (382)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTS-CCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCG
T ss_pred CccEEEECCCCcccccccccccchhhhhhhccc-cceeeeecchhhccccccccccccccccccCcEEEEeeccccccCC
Confidence 999999999999999999999999999999999 9999999999998887655555554444467999999999999999
Q ss_pred chhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC
Q 012095 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (471)
Q Consensus 308 G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~ 387 (471)
|+|+||+++++++++.+.+.......+++.+.|.++..++.. ..+|+..+++.|+++++.+.+.+... |+.+.+|+
T Consensus 238 G~RiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~p~ 313 (382)
T d1u08a_ 238 GWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRA---EPEHYLALPDFYRQKRDILVNALNES-RLEILPCE 313 (382)
T ss_dssp GGCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH---CTHHHHTHHHHHHHHHHHHHHHTTSS-SCEECCCC
T ss_pred cccchhhhccchhHHHHHhhhccccccccccccccccccccc---chHHHHHHHHHHHhhhhhhhhhhccC-CcEEecCC
Confidence 999999999999999999998888899999999999999987 46899999999999999999999776 89999999
Q ss_pred cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC----CCcEEEEeecCHHHHHHHHHHHHH
Q 012095 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD----DTCIRISYAASLTTLQAAVERIKK 460 (471)
Q Consensus 388 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~----~~~iRis~~~~~e~i~~~~~~l~~ 460 (471)
||||+|++++... ..++.+|+++|++++||.++||+.|+. .+||||||+.++|+|+++++||++
T Consensus 314 gg~~~~~~~~~~~---------~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~~~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 314 GTYFLLVDYSAVS---------TLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQ 381 (382)
T ss_dssp BSSEEEEECTTTC---------CSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred ceEEEEEecCCCC---------CCCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEeCCHHHHHHHHHHHhC
Confidence 9999999998641 137889999999989999999999974 368999999999999999999875
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.4e-59 Score=468.68 Aligned_cols=377 Identities=25% Similarity=0.436 Sum_probs=331.7
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~ 147 (471)
||+|+.++++++++++...+...++.|.++|+|+.|+|++++|+.+.+++.++. .+.++|++..|.++||+++++++++
T Consensus 1 ~~~r~~~~~~~~i~~l~~~a~~~~~~g~~vi~l~~G~p~~~~p~~~~~al~~~~-~~~~~Y~~~~G~~~LR~aia~~~~~ 79 (389)
T d2gb3a1 1 FSDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQPDLKTPEVFFERIYENK-PEVVYYSHSAGIWELREAFASYYKR 79 (389)
T ss_dssp CCHHHHSCCCCTTGGGHHHHHHHHHTTCEEEECSSCCCCSCCCTHHHHHHHHTC-CSSCCCCCTTCCHHHHHHHHHHHHH
T ss_pred CChhhhcCCCCHHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCHHHHHHHHhcC-CCCCCCCCCcCCHHHHHHHHHHHHH
Confidence 578899999999999988888888899999999999999999999999988753 4578899999999999999999999
Q ss_pred HhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc
Q 012095 148 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 227 (471)
Q Consensus 148 ~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~ 227 (471)
.+|+++++++|++|+|+++++..++.+++++||.|++++|+|+.|...++..|+.++.++.+.++ +..+.+.+...+.+
T Consensus 80 ~~g~~~~~~~I~it~G~~~~l~~~~~~l~~~gd~V~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~ 158 (389)
T d2gb3a1 80 RQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEE-GFAIPQNLESFINE 158 (389)
T ss_dssp TSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGG-TSCCCTTGGGGCCT
T ss_pred hcCCCcccceEEecccccccccccccccccCCCeEEEeCCCCccccccccccCcccccccccccc-ccchhhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999987544 44566777787888
Q ss_pred CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCcc
Q 012095 228 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307 (471)
Q Consensus 228 ~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 307 (471)
++++++++|||||||.+++.+++++|+++|++| +++||+||+|.++.+++...... .. ..++++++.|+||.++++
T Consensus 159 ~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~-~~~iI~De~y~~~~~~~~~~~~~-~~--~~~~~~v~~s~sK~~~~~ 234 (389)
T d2gb3a1 159 RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERH-GLFLIVDEVYSEIVFRGEFASAL-SI--ESDKVVVIDSVSKKFSAC 234 (389)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCSSCCCCGG-GS--CCTTEEEEEESTTTTTCG
T ss_pred CccEEEeCCCCccccccchHHHHHHHHhhcccC-CEEEEEecccccccccccccccc-cc--ccccccccccccccccCc
Confidence 999999999999999999999999999999999 99999999999999886543322 22 257899999999999999
Q ss_pred chhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC
Q 012095 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (471)
Q Consensus 308 G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~ 387 (471)
|||+||++++.+.+............+++.+.|.++..++.. .+.+++++++.|+++++.+.+.|+++++..+..|+
T Consensus 235 GlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~ 311 (389)
T d2gb3a1 235 GARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNL---DDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPS 311 (389)
T ss_dssp GGCCEEEECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCS
T ss_pred ccceeeeeccchhHHHHHhhhhhccccccccccccccccccc---cchhcccccccccccchhhhhhhhhhccccccCCC
Confidence 999999999766554444434445667888888888888875 57899999999999999999999998556778899
Q ss_pred cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHc-----CCEEEECCCCCCC-----CCcEEEEeecCHHHHHHHHHH
Q 012095 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK-----AQVALVPGDAFGD-----DTCIRISYAASLTTLQAAVER 457 (471)
Q Consensus 388 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~-----~gV~v~pg~~f~~-----~~~iRis~~~~~e~i~~~~~~ 457 (471)
+|||+|+++|.. ++.+++++|+++ .||.+.||+.|+. ++|+||+++.+++++++++++
T Consensus 312 ~g~~~~~~lp~~------------~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~~~~~~l~~a~~~ 379 (389)
T d2gb3a1 312 GAFYITAELPVE------------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDV 379 (389)
T ss_dssp BSSEEEEECSSS------------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCC------------CHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEcCCHHHHHHHHHH
Confidence 999999999854 788999999876 3789999998874 469999999899999999999
Q ss_pred HHHHHHhh
Q 012095 458 IKKGLLTL 465 (471)
Q Consensus 458 l~~~l~~~ 465 (471)
|+++++++
T Consensus 380 L~~~lk~f 387 (389)
T d2gb3a1 380 LMEGLKMF 387 (389)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999875
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=100.00 E-value=9.4e-59 Score=466.22 Aligned_cols=364 Identities=23% Similarity=0.340 Sum_probs=313.5
Q ss_pred HHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHH
Q 012095 87 ATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (471)
Q Consensus 87 ~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~ 166 (471)
....+..|+++|+|+.|+|+|++|+.+++++.+++.++.++|+ .|.++||++|++++++++|+++++++|++|+|+++
T Consensus 23 ~~~~~~~g~~vi~l~~g~pdf~~p~~v~~al~~~~~~~~~~Y~--~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~ 100 (394)
T d1c7na_ 23 YSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYT--GPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVP 100 (394)
T ss_dssp HHHCTTCCTTCCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSB--CCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHH
T ss_pred HHHhHhcCCCeEEccCCCCCCCCCHHHHHHHHHHHhCCCcCCC--CCCHHHHHHHHHHHHHhcCCCCCCcceEeeccchh
Confidence 3444567889999999999999999999999999988888894 47899999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCC-CCCcCCHHHHHhhhc-cCCcEEEEcCCCCCcccC
Q 012095 167 SILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS-ENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSV 244 (471)
Q Consensus 167 al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~ld~e~l~~~l~-~~~~~i~i~~p~NPtG~~ 244 (471)
++..+++++++|||+|++++|.|.++...+...|++.+.++.... ..|.+|.+.++..+. +++++|++||||||||.+
T Consensus 101 al~~~~~~~~~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~NPTG~v 180 (394)
T d1c7na_ 101 AVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRV 180 (394)
T ss_dssp HHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBC
T ss_pred hhhhhhccccccccccccccCcccchhhHHhhhhhcccccccccccccccchhhhhhhhhccccceEEEeccccccccee
Confidence 999999999999999999999999999999999999999987643 457789999988764 578999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCC-CCCCceEEEecCCcccCccchhheeeEcCH-HHHH
Q 012095 245 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP-GMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVA 322 (471)
Q Consensus 245 ~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~-~~i~ 322 (471)
++++++++|+++|++| +++||+||+|.++.|++..+.+..... ...++++++.||||.|+++|||+||+++++ .+.+
T Consensus 181 ~s~~~l~~l~~~a~~~-~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~~i~~ 259 (394)
T d1c7na_ 181 WKKDELQKIKDIVLKS-DLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRE 259 (394)
T ss_dssp CCHHHHHHHHHHHHHS-SCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHH
T ss_pred ccHHHhhhhhcccccc-ceeEeccccccccccCCccccchhhhhcccccceeecccccccccccccccccccccChhhhh
Confidence 9999999999999999 999999999999999876555544332 235789999999999999999999998765 5667
Q ss_pred HHHHHHhcccCCCChHHHHHHH-HHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC-CCCCeeeCCCcceEEeEecCCcc
Q 012095 323 ACNKIQSQFTSGASSISQKAGV-AALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYY 400 (471)
Q Consensus 323 ~l~~~~~~~~~~~~~~~q~aa~-~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~g~~~~~p~~g~~~~~~~~~~~ 400 (471)
.+.+.......++....+.++. ..... ..++.++.++.++++++.+.+.++. .+|+.+..|+|+||+|+++++..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~g~~~~~~~~~~~~ 336 (394)
T d1c7na_ 260 RFTKSRDATSGMPFTTLGYKACEICYKE---CGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALK 336 (394)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGGC
T ss_pred hhhhhhhhccccccccccchhhhhhhcc---hhhhhcccccccchhhhhhhhhhhccccceeecCCCceeEEEEECCCCC
Confidence 7777666555555544444433 33333 4788999999999999999998876 46888889999999999998631
Q ss_pred CCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012095 401 GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~l~~~~ 466 (471)
.++.+++++|++++||.+.||+.|+. ++|+|||++.++|+|+++++||++++++++
T Consensus 337 ----------~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~i~eal~rl~~~l~~Lk 394 (394)
T d1c7na_ 337 ----------MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLK 394 (394)
T ss_dssp ----------CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred ----------CCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 37899999999999999999999985 579999999899999999999999999875
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.9e-56 Score=439.66 Aligned_cols=353 Identities=18% Similarity=0.315 Sum_probs=304.2
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhc
Q 012095 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC 176 (471)
Q Consensus 97 ~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~ 176 (471)
+|.|++|+|+|++|+.+.+++.+++.++.++|++..| +++|+++++++++++|.++++++|++|+|+++++..++.+++
T Consensus 1 ~~~~~~~~~df~~p~~i~eal~~~~~~~~~~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~ 79 (361)
T d1d2fa_ 1 LLPFTISDMDFATAPCIIEALNQRLMHGVFGYSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS 79 (361)
T ss_dssp CEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCCCSCC-HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS
T ss_pred CcCcCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhcc
Confidence 5899999999999999999999999888889988888 789999999999999999999999999999999999999999
Q ss_pred CCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCC-CCCcCCHHHHHhhhc-cCCcEEEEcCCCCCcccCCCHHHHHHHH
Q 012095 177 SPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS-ENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIA 254 (471)
Q Consensus 177 ~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~ld~e~l~~~l~-~~~~~i~i~~p~NPtG~~~~~~~l~~i~ 254 (471)
+|||+|++++|+|++|..+++..|.+++.++.+.+ ++|.+|++.+++.+. +++++++++|||||||.+++.+++++|+
T Consensus 80 ~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~~~i~ 159 (361)
T d1d2fa_ 80 ETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMA 159 (361)
T ss_dssp CTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHH
T ss_pred ccccccccccccccchhHHHHhhcceEEeecccccccccccccccchhhcccCCceeEEecccccccccccchhhhhhhh
Confidence 99999999999999999999999999999988753 567799999999885 5789999999999999999999999999
Q ss_pred HHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcC-HHHHHH-HHHHHhccc
Q 012095 255 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAA-CNKIQSQFT 332 (471)
Q Consensus 255 ~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~-~~~i~~-l~~~~~~~~ 332 (471)
++|+++ +++||+||+|.++.|++....++.... .++++++.|+||.++++|+|+||++.+ +...+. +........
T Consensus 160 ~~~~~~-~~~lI~De~y~~~~~~~~~~~~~~~~~--~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~~~~~~~~ 236 (361)
T d1d2fa_ 160 DLCERH-GVRVISDEIHMDMVWGEQPHIPWSNVA--RGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDG 236 (361)
T ss_dssp HHHHHT-TCEEEEECTTTTCBCSSSCCCCGGGTC--CSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSC
T ss_pred hhhhhh-heeeeeccccccccccccccccccccc--ccccccccccccccccccccceeeecchhHHHHHHhhhcccccc
Confidence 999999 999999999999999876666655543 478999999999999999999998754 333333 333333332
Q ss_pred -CCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC-CCCCeeeCCCcceEEeEecCCccCCcccCCCCC
Q 012095 333 -SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI 410 (471)
Q Consensus 333 -~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~ 410 (471)
.+++...+.++..++.. ...+.++.+..++++++.+.+.+.+ .+++.+..|+||||+|++++...
T Consensus 237 ~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~gg~~~~~~l~~~~---------- 303 (361)
T d1d2fa_ 237 LSSPSVLALTAHIAAYQQ---GAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLN---------- 303 (361)
T ss_dssp CCSCCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGGC----------
T ss_pred cccchhhhHHHHHHHhhc---cchhhhcccccchhhHHHHHHHhhhhcccccccccCceeEEEEEccCCC----------
Confidence 23455555555555554 4778899999999999998887765 46788889999999999986421
Q ss_pred CCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012095 411 ENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 411 ~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~l~~~~ 466 (471)
.++.+|+++|++++||.+.||+.|+. ++|||+|++.+++++++++++|.+++++++
T Consensus 304 ~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~~~~e~l~~al~rl~~~l~~lr 361 (361)
T d1d2fa_ 304 IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAVR 361 (361)
T ss_dssp CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHHhcC
Confidence 37899999999999999999999985 468999999899999999999999999875
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.6e-56 Score=452.17 Aligned_cols=386 Identities=20% Similarity=0.331 Sum_probs=324.2
Q ss_pred cccccccc--ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCC--hHHHHHHHHHHHHcC---CCCCCCCC
Q 012095 60 EEVQVDVS--LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT--PVLIAEAGINAIREG---FTRYTPNA 132 (471)
Q Consensus 60 ~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~--p~~v~~a~~~~~~~~---~~~Y~~~~ 132 (471)
.-|.+++. +|...++++++.++++.+. ..++++|+|+.|.|+..+ ++.+.+++.+++... ..+|++..
T Consensus 6 ~~~~~~~~~~~s~~~~~~~~s~ir~~~~~-----~~~~~~I~l~~G~Pd~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~ 80 (420)
T d1vp4a_ 6 HHMVVNLEGKISKIGQNMKSSIIREILKF-----AADKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTE 80 (420)
T ss_dssp CSHHHHHHHHCCHHHHTCCCCCHHHHTTT-----TTSTTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTT
T ss_pred ccCcccHHHHHhHHHHhCCCcHHHHHHHH-----hCCCCcEecCCcCCCCccCCHHHHHHHHHHHHhhCCccccCCCCCc
Confidence 34665554 8888889999988876543 257789999999988653 456777777776543 36899999
Q ss_pred CCHHHHHHHHHHHHHHhCCC-CCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCC
Q 012095 133 GTLELRSAICHKLKEENGLS-YTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS 211 (471)
Q Consensus 133 G~~~lr~~ia~~~~~~~g~~-~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~ 211 (471)
|.++||++|++++++.+|++ +++++|++|+|+++++..++.++++|||.|++++|+|+.|...++..|++++.+|.+++
T Consensus 81 G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~ 160 (420)
T d1vp4a_ 81 GDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLEDD 160 (420)
T ss_dssp CCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhhhccccccccccccccchhHHHHHHhhhccccccccc
Confidence 99999999999999999986 68999999999999999999999999999999999999999999999999999998753
Q ss_pred CCCcCCHHHHHhhhc--------cCCc-EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCcc
Q 012095 212 ENFLLDPKVLESKLT--------EKSR-LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT 282 (471)
Q Consensus 212 ~~~~ld~e~l~~~l~--------~~~~-~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~ 282 (471)
+++++.++..+. .+++ ++++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++....
T Consensus 161 ---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~-~i~ii~De~y~~l~~~~~~~~ 236 (420)
T d1vp4a_ 161 ---GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKY-DLFIVEDDPYGALRYEGETVD 236 (420)
T ss_dssp ---EECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECSSTTCBCSSCCCC
T ss_pred ---ccccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcc-cccccccchhhhccccCcccc
Confidence 368877765432 2333 455799999999999999999999999999 999999999999999876554
Q ss_pred ccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHH
Q 012095 283 SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 362 (471)
Q Consensus 283 ~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~ 362 (471)
+...... .+++++++|+||.++ +|||+||+++++++++++.+.......+++.+.|.++..++..+.. .+++++.++
T Consensus 237 ~~~~~~~-~~~~i~~~s~sk~~~-~G~RiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~-~~~~~~~~~ 313 (420)
T d1vp4a_ 237 PIFKIGG-PERVVLLNTFSKVLA-PGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDL-LEQLKPTIE 313 (420)
T ss_dssp CHHHHHC-TTTEEEEEESTTTTC-GGGCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCH-HHHTHHHHH
T ss_pred ccccccc-ccceeEEeccccccc-cccccccccccchhhhhhhhhhhhccccCchhhhhhhhhhcccccc-cccchhHHH
Confidence 4444332 578999999999985 9999999999999999999998888889999999999988886432 577888888
Q ss_pred HHHHHHHHHHHHhcC----CCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--
Q 012095 363 AFRERRDFLVKSFGE----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-- 436 (471)
Q Consensus 363 ~~~~~r~~l~~~L~~----~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~-- 436 (471)
.|+++++.+.+.|.+ ++|+++..|+||||+|+++++.. ++.++++.|.+ .||.+.||+.|+.
T Consensus 314 ~~~~~~~~~~~~L~~~~~~~~g~~~~~p~gg~f~~~~~~~~~-----------d~~~~~~~l~~-~gV~v~PG~~F~~~~ 381 (420)
T d1vp4a_ 314 LYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGF-----------DTWEMFEYAKR-KKVFYVPGRVFKVYD 381 (420)
T ss_dssp HHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTTC-----------CTTTTHHHHHH-HTEECEEGGGGCTTC
T ss_pred HhhhhcccchhhhhhhhccCCCcEEecCCceEEEEEECCCCC-----------CHHHHHHHHHH-CCeEEEechhhCCCC
Confidence 888888887777764 57899999999999999998642 66678887665 4999999999974
Q ss_pred --CCcEEEEeec-CHHHHHHHHHHHHHHHHhhCCCC
Q 012095 437 --DTCIRISYAA-SLTTLQAAVERIKKGLLTLRPGV 469 (471)
Q Consensus 437 --~~~iRis~~~-~~e~i~~~~~~l~~~l~~~~~~~ 469 (471)
.++||||++. +++++++++++|+++++++..++
T Consensus 382 ~~~~~iRls~~~~~~e~l~~a~~rL~~~l~~~~~~~ 417 (420)
T d1vp4a_ 382 EPSPSMRLSFCLPPDEKIVEGIKRLREVVLEYGKEK 417 (420)
T ss_dssp CCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEeCcCCHHHHHHHHHHHHHHHHHhhHhh
Confidence 3699999986 88999999999999999876543
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=100.00 E-value=2e-55 Score=443.22 Aligned_cols=384 Identities=18% Similarity=0.316 Sum_probs=323.9
Q ss_pred ccccccccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCC--ChHHHHHHHHHHHHc---CCCCCCCCCCCHH
Q 012095 62 VQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFD--TPVLIAEAGINAIRE---GFTRYTPNAGTLE 136 (471)
Q Consensus 62 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~--~p~~v~~a~~~~~~~---~~~~Y~~~~G~~~ 136 (471)
|+++..+|+++..++++.++++.+.+ .++++|+|+.|.|+.. |.+.+.+++.+++.. ...+|++..|.++
T Consensus 1 ~~~~~~~~~~~~~~~~s~ire~~~~~-----~~~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~ 75 (403)
T d1wsta1 1 INFDSFFSEKAMLMKASEVRELLKLV-----ETSDVISLAGGLPAPETFPVETIKKIAVEVLEEHADKALQYGTTKGFTP 75 (403)
T ss_dssp CCGGGGCCHHHHHCCCHHHHHHHHHH-----TSSSCEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHH
T ss_pred CCHHHHHHHHHhcCCCcHHHHHHHHh-----CCCCcEECCCCCCCccccCHHHHHHHHHHHHHhCcccccCCCCCcCCHH
Confidence 45677899999999999887775533 4577999999998764 345677777777654 2467999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcC
Q 012095 137 LRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 216 (471)
Q Consensus 137 lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~l 216 (471)
||+++++++++.+|.++++++|++|+|+++++..++.+++++||.|++++|+|+.|...+..+|++++.|+.+.+..+..
T Consensus 76 lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~ 155 (403)
T d1wsta1 76 LRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDKGMRVD 155 (403)
T ss_dssp HHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHH
T ss_pred HHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHhhcCCccccCCCcchhhhHHHhhccccceeEeecccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876543222
Q ss_pred CHHHHHhh-h---ccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCC
Q 012095 217 DPKVLESK-L---TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292 (471)
Q Consensus 217 d~e~l~~~-l---~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 292 (471)
........ . ++.+.++++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++....++...+ ..+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~-~~~li~De~y~~l~~~~~~~~~~~~~~-~~~ 233 (403)
T d1wsta1 156 LLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEY-DFLIVEDGPYSELRYSGEPTPPIKHFD-DYG 233 (403)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCSSCCCCCGGGGC-SSS
T ss_pred cccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhc-CceeccccchhheecCCCCCCcccccC-CCC
Confidence 22222211 1 22345666799999999999999999999999999 999999999999999887666665554 368
Q ss_pred ceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHH
Q 012095 293 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 372 (471)
Q Consensus 293 ~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~ 372 (471)
++++++||||.++ +|+|+||+++++++++.+.........+++...|.+...++.... .+.++.+.++.++++++.+.
T Consensus 234 ~~i~~~S~SK~~~-~G~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 311 (403)
T d1wsta1 234 RVIYLGTFSKILA-PGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGY-LDEHIPKIIEFYKPRRDAML 311 (403)
T ss_dssp CEEEEEESTTTTC-GGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEccccceec-CcccccccccchHHHHHHHHHHhhhccccccchhhhHHhhhhccc-cchhHHHHHHHHHHHHHHHH
Confidence 9999999999996 999999999999999999988888888899999988888777533 26778999999999999999
Q ss_pred HHhcCC--CCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC----CCcEEEEeec
Q 012095 373 KSFGEL--EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD----DTCIRISYAA 446 (471)
Q Consensus 373 ~~L~~~--~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~----~~~iRis~~~ 446 (471)
+.|.+. .|+.+..|+||||+|+++|+.. +...+++.|+++ ||.++||+.|+. ++++||+++.
T Consensus 312 ~~L~~~~~~~~~~~~p~gg~~~~~~~~~~~-----------~~~~~~~~l~~~-gV~v~pg~~f~~~~~~~~~iRi~~~~ 379 (403)
T d1wsta1 312 EALEEYMPEGVEWTKPEGGMFVRVTLPEGI-----------DTKLMMERAVAK-GVAYVPGEAFFVHRDKKNTMRLNFTY 379 (403)
T ss_dssp HHHHHHCCTTCEECCCSBSSEEEEECCTTC-----------CTTTTHHHHHHT-TEECEEGGGGSTTCCCCSEEEEECSS
T ss_pred HHHHhhccCCeEEeCCCceeEEEEECCCCC-----------CHHHHHHHHHHC-CEEEEechhhcCCCCCCCEEEEEecC
Confidence 999874 4688899999999999998752 667788877765 999999999874 4799999986
Q ss_pred -CHHHHHHHHHHHHHHHHhhC
Q 012095 447 -SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 447 -~~e~i~~~~~~l~~~l~~~~ 466 (471)
+++++++++++|++++++..
T Consensus 380 ~~~~~l~~al~rl~~~l~~~~ 400 (403)
T d1wsta1 380 VPEETIREGVRRLAETIKEEM 400 (403)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999998653
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=6.5e-55 Score=434.19 Aligned_cols=363 Identities=29% Similarity=0.505 Sum_probs=316.2
Q ss_pred ccccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHH
Q 012095 66 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKL 145 (471)
Q Consensus 66 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~ 145 (471)
|++++|...++++.+..+...+.. .++|+|+.|+|++++|+.+++++.+++.+ .++|++..|.++||++|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~la~~-----~~~I~ls~g~p~~~~p~~i~~al~~~l~~-~~~Y~~~~G~~elr~aiA~~~ 74 (368)
T d1v2da_ 1 MRLHPRTEAAKESIFPRMSGLAQR-----LGAVNLGQGFPSNPPPPFLLEAVRRALGR-QDQYAPPAGLPALREALAEEF 74 (368)
T ss_dssp CCCCGGGGGC---CHHHHHHHHHH-----HTCEECCCCSCSSCCCHHHHHHHHHHTTT-SCSCCCTTCCHHHHHHHHHHH
T ss_pred CCCChhhhhcCCCHHHHHHHHhcc-----CCCEEecCCCCCCCCCHHHHHHHHHHhhc-ccCCCCCcCCHHHHHHHHhhc
Confidence 568899999999888777665553 24899999999999999999999998754 578999999999999999987
Q ss_pred HHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCC-CCCcCCHHHHHhh
Q 012095 146 KEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS-ENFLLDPKVLESK 224 (471)
Q Consensus 146 ~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~ld~e~l~~~ 224 (471)
+ +++++|++|+|+++++..++.+++++||.|++++|+|+.+...++..|.+++.++++.. +++.+|++.++++
T Consensus 75 ~------~~~~~Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~ 148 (368)
T d1v2da_ 75 A------VEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKA 148 (368)
T ss_dssp T------SCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTT
T ss_pred c------cCCcceeeccchHHHHHHHhhccccccccccccCCcchhhhhHHHhcCCccceeccccccccccCCHHHHHHh
Confidence 3 68899999999999999999999999999999999999999999999999999988643 4688999999999
Q ss_pred hccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCccc
Q 012095 225 LTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 304 (471)
Q Consensus 225 l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 304 (471)
+++++++++++|||||||.+++.+++++|+++|++| +++||+||+|..+.+.......... ..++.+++.|+||.+
T Consensus 149 ~~~~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~-~i~ii~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~sk~~ 224 (368)
T d1v2da_ 149 LTPRTRALLLNTPMNPTGLVFGERELEAIARLARAH-DLFLISDEVYDELYYGERPRRLREF---APERTFTVGSAGKRL 224 (368)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBSSSCCCCHHHH---CTTTEEEEEEHHHHT
T ss_pred hccCceEEEEcCCCCcccccCCHHHHHHHHHHHHHc-CCeeeechhhhhhcccccccccccc---cccccceeecccccc
Confidence 999999999999999999999999999999999999 9999999999987665443222221 246788999999999
Q ss_pred CccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeee
Q 012095 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (471)
Q Consensus 305 g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~ 384 (471)
+++|+|+||+++++++++.+.+.......+++.+.|.++..++..+.. .+|++.+++.|+++++++.+.|+++ |+++.
T Consensus 225 ~~~G~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~ 302 (368)
T d1v2da_ 225 EATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARR-EGFYEALREGYRRRRDLLAGGLRAM-GLRVY 302 (368)
T ss_dssp TCGGGCCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHT-TCCEE
T ss_pred cccccccccccccccccchhhhhhhccccccccccccccccccccccc-hhhHHHHHHHHHHhhhhhhhhHHhc-CcEEe
Confidence 999999999999999999999998888889999999999988875332 5689999999999999999999998 99999
Q ss_pred CCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC----CCcEEEEeecCHHHHHHHHHHHHH
Q 012095 385 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD----DTCIRISYAASLTTLQAAVERIKK 460 (471)
Q Consensus 385 ~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~----~~~iRis~~~~~e~i~~~~~~l~~ 460 (471)
.|+|+||+|+++|.. +.. +|++++||.++||+.|+. +++||||++.++|++++++++|++
T Consensus 303 ~p~g~~~~~~~l~~~------------~~~----~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~~~~e~i~~ai~rL~~ 366 (368)
T d1v2da_ 303 VPEGTYFLMAELPGW------------DAF----RLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGR 366 (368)
T ss_dssp CCSBSSEEEEECTTC------------CHH----HHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHH
T ss_pred cCCceeEEEEeCCcc------------HHH----HHHHhCCEEEEechhhCCCCCCCCEEEEEecCCHHHHHHHHHHHHH
Confidence 999999999999853 443 356677999999999973 479999999999999999999998
Q ss_pred HH
Q 012095 461 GL 462 (471)
Q Consensus 461 ~l 462 (471)
++
T Consensus 367 ~l 368 (368)
T d1v2da_ 367 VV 368 (368)
T ss_dssp HC
T ss_pred hC
Confidence 74
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=100.00 E-value=3.4e-54 Score=437.83 Aligned_cols=360 Identities=20% Similarity=0.345 Sum_probs=297.9
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHH------------cCCCCCCCCCCCHHHHHHHHHHHHHHhCC--CCCCCcEEEeC
Q 012095 97 VIRLAAGEPDFDTPVLIAEAGINAIR------------EGFTRYTPNAGTLELRSAICHKLKEENGL--SYTPDQILVSN 162 (471)
Q Consensus 97 ~i~l~~g~~~~~~p~~v~~a~~~~~~------------~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~--~~~~~~i~it~ 162 (471)
+|+|+.+++.+. .+.+.+.+.+... .+..+|++..|.++||++|++++++.+|. ++++++|++|+
T Consensus 38 ~i~l~~~en~l~-~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~ 116 (431)
T d1m7ya_ 38 IIQMGLAENQLC-FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTA 116 (431)
T ss_dssp BEECSSCCCCSC-HHHHHHHHHHCCTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEE
T ss_pred EEEeeccccccc-HHHHHHHHHhCCchhhhhhhhhhccHHhcCCcCCcCcHHHHHHHHHHHHHHhCCCCCCCcceEEECC
Confidence 899999998874 3334333332100 01246999999999999999999999874 56789999999
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHH-cCCEEEEecCCCCCCCcCCHHHHHhhhcc------CCcEEEEc
Q 012095 163 GAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI-ADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILC 235 (471)
Q Consensus 163 G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~-~G~~~~~v~~~~~~~~~ld~e~l~~~l~~------~~~~i~i~ 235 (471)
|+++++..+++++++|||+|++++|+|+.+...++. .|++++.++++.+++|.+|++.+++.+.+ ++++++++
T Consensus 117 G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 196 (431)
T d1m7ya_ 117 GATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVT 196 (431)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHhcCceeccccccchhcccccHHHhhhhhhhhhhccCcceEEEec
Confidence 999999999999999999999999999999988874 58999999999888999999999887743 57789999
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCC---------CCCCceEEEecCCcccCc
Q 012095 236 SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP---------GMWERTLTVNGFSKAFAM 306 (471)
Q Consensus 236 ~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~---------~~~~~~i~~~S~SK~~g~ 306 (471)
|||||||.+++++++++|+++|++| +++||+||+|.++.|++....++.++. ...+++++++||||.||+
T Consensus 197 nP~NPtG~~~s~~~l~~i~~~a~~~-~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~ 275 (431)
T d1m7ya_ 197 NPSNPLGTTMTRNELYLLLSFVEDK-GIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGL 275 (431)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCC
T ss_pred Ccccccccccccccccccccccccc-CcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccccC
Confidence 9999999999999999999999999 999999999999999876555544322 234689999999999999
Q ss_pred cchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC
Q 012095 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (471)
Q Consensus 307 ~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p 386 (471)
+|+|+||++++++++.......... .+.++..|.++.+.+.......+++.+.+..++++++.+.+.|++. |+++.+|
T Consensus 276 ~G~RiG~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gi~~~~p 353 (431)
T d1m7ya_ 276 PGFRVGAIYSNDDMVVAAATKMSSF-GLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GISCLNG 353 (431)
T ss_dssp GGGCEEEEEESCHHHHHHHHHHGGG-SCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEECCC
T ss_pred CCCccceeccchhhhHHHHHHHhcc-ccccccccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhcC-CcEEecC
Confidence 9999999999988876665544433 3466677777777665422224688999999999999999999886 9999999
Q ss_pred CcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeec-CHHHHHHHHHHHHHHHH
Q 012095 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAA-SLTTLQAAVERIKKGLL 463 (471)
Q Consensus 387 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~-~~e~i~~~~~~l~~~l~ 463 (471)
+||||+|++++...... ...++.+++++|++++||.+.||+.|+. ++||||+|+. ++++|+++++||+++++
T Consensus 354 ~gg~f~w~~l~~~~~~~-----~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~~~~~Ri~~a~~~e~~l~~al~rL~~~l~ 428 (431)
T d1m7ya_ 354 NAGLFCWVDMRHLLRSN-----TFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFVG 428 (431)
T ss_dssp CSSSEEEEECGGGSSSS-----SHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred CceeEEEEECccccccC-----cccCHHHHHHHHHHHCCEEEEeccccCCCCCCEEEEEeCcCCHHHHHHHHHHHHHHHH
Confidence 99999999998653210 0124568999999999999999999985 5899999987 78899999999999998
Q ss_pred hh
Q 012095 464 TL 465 (471)
Q Consensus 464 ~~ 465 (471)
++
T Consensus 429 ~~ 430 (431)
T d1m7ya_ 429 EY 430 (431)
T ss_dssp HH
T ss_pred Hh
Confidence 74
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=100.00 E-value=1.1e-53 Score=433.67 Aligned_cols=360 Identities=20% Similarity=0.348 Sum_probs=294.2
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHH-----------cCCCCCCCCCCCHHHHHHHHHHHHHHhCC--CCCCCcEEEeC
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIR-----------EGFTRYTPNAGTLELRSAICHKLKEENGL--SYTPDQILVSN 162 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~-----------~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~--~~~~~~i~it~ 162 (471)
.+|+|+.++|.+. .+.+.+.+.+... ....+|++..|.++||++|++|+++.+|. ++++++|++|+
T Consensus 37 G~i~l~~aen~l~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~ 115 (428)
T d1iaya_ 37 GVIQMGLAENQLC-LDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAG 115 (428)
T ss_dssp SBEECSSCCCCSS-HHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEE
T ss_pred ceEEeecccCccc-hHHHHHHHHhCCchhhhHhHhhhCHHhccCcCCcchHHHHHHHHHHHHHHhCCCCCCChhhEEEcC
Confidence 4899999998763 3444443332110 01247999999999999999999999885 46789999999
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHH-cCCEEEEecCCCCCCCcCCHHHHHhhh------ccCCcEEEEc
Q 012095 163 GAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI-ADATPVILPTRISENFLLDPKVLESKL------TEKSRLLILC 235 (471)
Q Consensus 163 G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~-~G~~~~~v~~~~~~~~~ld~e~l~~~l------~~~~~~i~i~ 235 (471)
|+++++..++.++++|||.|++++|+|+.|...+.. .|++++.++++.+++|.+|++.++.++ ..++++++++
T Consensus 116 G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~ 195 (428)
T d1iaya_ 116 GATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILT 195 (428)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCEEEEccCCchHHHHHHHHhcCCeEEEeecccccccccccccccchhhhhhccCCCceEEEEc
Confidence 999999999999999999999999999999987764 589999999998889999999887654 3467889999
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCC-------CCCCceEEEecCCcccCccc
Q 012095 236 SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP-------GMWERTLTVNGFSKAFAMTG 308 (471)
Q Consensus 236 ~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-------~~~~~~i~~~S~SK~~g~~G 308 (471)
|||||||.+++.+++++|+++|++| +++||+||+|.++.|++....++.++. ...+++++++||||.|+++|
T Consensus 196 nP~NPtG~~~s~~~~~~i~~~a~~~-~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G 274 (428)
T d1iaya_ 196 NPSNPLGTTLDKDTLKSVLSFTNQH-NIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPG 274 (428)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHTT-TCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGG
T ss_pred cCCCcccccccccccchhheeeccC-cEEEEecccccccccCcccccccccccchhhccccccceEEEEecCCCcccCCC
Confidence 9999999999999999999999999 999999999999999876665554331 23578999999999999999
Q ss_pred hhheeeEcC-HHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC
Q 012095 309 WRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (471)
Q Consensus 309 ~R~G~v~~~-~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~ 387 (471)
+|+||++++ +.+++.+...... ...+...|.++.+.+......++++++.++.++++++.+.+.|+.. |+++.+|+
T Consensus 275 lRiG~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~-gi~~~~p~ 351 (428)
T d1iaya_ 275 FRVGIIYSFNDDVVNCARKMSSF--GLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCLKNN 351 (428)
T ss_dssp GCEEEEEESCHHHHHHHHHHHTT--SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCS
T ss_pred cccccccccccchhhhhhhhhcc--cccccccccchhhhhhhhccccccccccccccchhHHHHHHHHHhC-CCEEecCC
Confidence 999999984 5666666665443 2467777777766665421124567888899999999999999876 99999999
Q ss_pred cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeec-CHHHHHHHHHHHHHHHHh
Q 012095 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAA-SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 388 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~-~~e~i~~~~~~l~~~l~~ 464 (471)
||||+|++++...... ...++.+++++|++++||.+.||+.|+. ++|||++|+. ++++|+++++||++++..
T Consensus 352 gg~f~w~~l~~~~~~~-----~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a~~~~~~l~~al~Rl~~~l~~ 426 (428)
T d1iaya_ 352 AGLFCWMDLRPLLRES-----TFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp SSSEEEEECGGGCSSS-----SHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECccccccC-----CCCCHHHHHHHHHHhCCEEEEcchhcCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999998643210 1124567899999999999999999985 6899999987 778899999999999976
Q ss_pred h
Q 012095 465 L 465 (471)
Q Consensus 465 ~ 465 (471)
.
T Consensus 427 ~ 427 (428)
T d1iaya_ 427 E 427 (428)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=100.00 E-value=1.2e-51 Score=415.16 Aligned_cols=368 Identities=15% Similarity=0.140 Sum_probs=299.1
Q ss_pred cccccccCCChHHHHHHHHHHHHhcCCCeEEcCCCC---CCCC--ChHHHHHHHHHHHHcCC-CCCCCCCCCHHHHHHHH
Q 012095 69 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGE---PDFD--TPVLIAEAGINAIREGF-TRYTPNAGTLELRSAIC 142 (471)
Q Consensus 69 s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~---~~~~--~p~~v~~a~~~~~~~~~-~~Y~~~~G~~~lr~~ia 142 (471)
...+..-++.++..+.+.++. +..+++|+|+.|. ++.. .++.|+++..+...++. .+|+|..|.++||++++
T Consensus 4 ~~~~~~~p~d~i~~~~~~~~~--d~~~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia 81 (401)
T d7aata_ 4 WSHVEMGPPDPILGVTEAFKR--DTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASA 81 (401)
T ss_dssp STTCCCCCCCHHHHHHHHHHH--CCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHH
T ss_pred cccCCCCCCChHHHHHHHHhC--CCCCCcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHH
Confidence 345666677877776655442 3445689999994 4433 35889999888887654 47999999999999999
Q ss_pred HHHHHHhCCCCCCCcEEEeCCh-----HHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCC
Q 012095 143 HKLKEENGLSYTPDQILVSNGA-----KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLD 217 (471)
Q Consensus 143 ~~~~~~~g~~~~~~~i~it~G~-----~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld 217 (471)
+++.+.++..+.+++|+++.|+ .+++..+++++++|||+|++++|+|+.|...++.+|++++.+|+..++++.++
T Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~ 161 (401)
T d7aata_ 82 ELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLD 161 (401)
T ss_dssp HHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEEC
T ss_pred HHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhhHHHHcCCeEEEEecccccccccc
Confidence 9999888877778888776543 35677788889999999999999999999999999999999999888889999
Q ss_pred HHHHHhhhc---cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCcccc--ccCCCCCC
Q 012095 218 PKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF--ASLPGMWE 292 (471)
Q Consensus 218 ~e~l~~~l~---~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~--~~~~~~~~ 292 (471)
++.+.+.+. ++++++++|+||||||.+++.+++++|+++|++| +++||+||+|.++.|++...... .......+
T Consensus 162 ~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~-~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~ 240 (401)
T d7aata_ 162 FTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKR-NLLAYFDMAYQGFASGDINRDAWALRHFIEQGI 240 (401)
T ss_dssp HHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcc-eEEEEEeccchhhhcCCcccchhhhhhhhhhhc
Confidence 999988773 5788999999999999999999999999999999 99999999999999976432221 12223357
Q ss_pred ceEEEecCCcccCccchhheeeEcCHHHHHHHHHH-------HhcccCCCChHHHHHHHHHHhccCC---ChHHHHHHHH
Q 012095 293 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYA---GGEVVSKMVK 362 (471)
Q Consensus 293 ~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~-------~~~~~~~~~~~~q~aa~~~L~~~~~---~~~~~~~~~~ 362 (471)
+++++.|+||.++++|||+||++++.++++.+.+. ......+++.+.|.++...+.+... ...+++.+++
T Consensus 241 ~~~~~~s~sk~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 320 (401)
T d7aata_ 241 DVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMAD 320 (401)
T ss_dssp CCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred ccceeEeccccceeeccccceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999987776655433 3344567899999999988875321 1345778889
Q ss_pred HHHHHHHHHHHHhcCCC---CCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCc
Q 012095 363 AFRERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTC 439 (471)
Q Consensus 363 ~~~~~r~~l~~~L~~~~---g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~ 439 (471)
+|+++|+.+.+.|+++. .|.+..|++|||+|+.+ +.+++++|++++||++.||.
T Consensus 321 ~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l----------------s~e~~~~L~~e~gV~~~pg~------- 377 (401)
T d7aata_ 321 RIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGL----------------KPEQVERLTKEFSIYMTKDG------- 377 (401)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCC----------------CHHHHHHHHHHHCEECCTTC-------
T ss_pred HHHHHHHHHHHHHHHhCCCCCcceECCCCeEEEecCC----------------CHHHHHHHHHhCCEEECCCc-------
Confidence 99999999999999862 25667899999999754 24678899999999999985
Q ss_pred EEEEeec-CHHHHHHHHHHHHHHHH
Q 012095 440 IRISYAA-SLTTLQAAVERIKKGLL 463 (471)
Q Consensus 440 iRis~~~-~~e~i~~~~~~l~~~l~ 463 (471)
|||++. ++++|+.+.++|.++++
T Consensus 378 -Ris~a~~~~~~i~~la~ai~~v~k 401 (401)
T d7aata_ 378 -RISVAGVASSNVGYLAHAIHQVTK 401 (401)
T ss_dssp -EEEGGGCCTTTHHHHHHHHHHHHC
T ss_pred -EEEeccCCHHHHHHHHHHHHHHhC
Confidence 999997 88899999999988764
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=1.1e-48 Score=387.23 Aligned_cols=332 Identities=20% Similarity=0.282 Sum_probs=279.5
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHH
Q 012095 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 173 (471)
Q Consensus 94 g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~ 173 (471)
..++|||+.|.|++++|+.+++++.+++.. ..+| |+.|..+||+++++++ | +++++|++|+|+++++..++.
T Consensus 21 p~~~idls~~~np~~~p~~~~~a~~~~~~~-~~~Y-p~~~~~~Lr~aia~~~----~--v~~~~I~~~~g~~~~~~~~~~ 92 (355)
T d1lc5a_ 21 PDQLLDFSANINPLGMPVSVKRALIDNLDC-IERY-PDADYFHLHQALARHH----Q--VPASWILAGNGETESIFTVAS 92 (355)
T ss_dssp GGGSEECSSCCCTTCCCHHHHHHHHHTGGG-GGSC-CCTTCHHHHHHHHHHH----T--SCGGGEEEESSHHHHHHHHHH
T ss_pred hhheEEccCCCCCCCCCHHHHHHHHHHHHH-hccC-CCCChHHHHHHHHHHh----C--CCHHHEEecccHHHHHHHHHh
Confidence 336899999999999999999999987654 5678 7778899999999996 4 578999999999999998776
Q ss_pred HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHH
Q 012095 174 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 253 (471)
Q Consensus 174 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i 253 (471)
.+ .|+.+++..|.|..|.......+++++.+|++.+++|.++ +.+++.+.+++++|+++|||||||.+++.+++++|
T Consensus 93 ~~--~~~~~~v~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~v~l~nP~NPtG~~~~~e~l~~i 169 (355)
T d1lc5a_ 93 GL--KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLT-DAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAI 169 (355)
T ss_dssp HH--CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCC-TTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHH
T ss_pred hh--ccccccccCCccceeccccccccccceeeeeeccCCccce-eeeeeccccccceeeeecccCcccccchhhhhhhh
Confidence 65 3556667789999999999999999999999888888766 56777788899999999999999999999999999
Q ss_pred HHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHH-HHHHHHHHhccc
Q 012095 254 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF-VAACNKIQSQFT 332 (471)
Q Consensus 254 ~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~-i~~l~~~~~~~~ 332 (471)
+++|++| +++||+||+|.++.+.+..... .....+++++++||||.+|++|+|+||++++++. .+.+.+.. ..
T Consensus 170 ~~~a~~~-~~~li~De~y~~~~~~~~~~~~---~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~~~~~~~~~--~~ 243 (355)
T d1lc5a_ 170 ADRCKSL-NINLILDEAFIDFIPHETGFIP---ALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQ--MP 243 (355)
T ss_dssp HHHHHHH-TCEEEEECTTGGGSTTCCCSGG---GCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHS--CT
T ss_pred hhhcccc-ccccccccceeeeeeecccccc---cccccccceeecccccccccccccccceeccchhhhHHHHhhc--CC
Confidence 9999999 9999999999998766543222 2234689999999999999999999999998664 45555443 33
Q ss_pred CCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCC
Q 012095 333 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 412 (471)
Q Consensus 333 ~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~ 412 (471)
.+.+.++|.++.++|++ ..++.+.++.++++++++.+.|.+++|+++. |.+++|+|++++. +
T Consensus 244 ~~~~~~~~~~a~~~l~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-p~~~~f~~~~~~~-------------~ 305 (355)
T d1lc5a_ 244 WSVNALAALAGEVALQD----SAWQQATWHWLREEGARFYQALCQLPLLTVY-PGRANYLLLRCER-------------E 305 (355)
T ss_dssp TCSCHHHHHHHHHGGGC----HHHHHHHHHHHHHHHHHHHHHHHTSTTEEEC-CCSSSEEEEEESC-------------T
T ss_pred ccccccccccccccccc----cchhHHHHHHHHHHHHHHHHHHhhcCCcEEC-CCCCEEEEEECCC-------------C
Confidence 56889999999999984 7889999999999999999999999888765 6778889999874 4
Q ss_pred HHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHH
Q 012095 413 SESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGL 462 (471)
Q Consensus 413 ~~~l~~~Ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~i~~~~~~l~~~l 462 (471)
+.++++.|+++ ||.++||..|+. ++|||||++ +++++++++++|++++
T Consensus 306 ~~~~~~~L~~~-gv~vr~~~~f~~~~~~~iRis~~-~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 306 DIDLQRRLLTQ-RILIRSCANYPGLDSRYYRVAIR-SAAQNERLLAALRNVL 355 (355)
T ss_dssp TCCHHHHHHTT-TEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHC-CcEEEeCccCCCCCCCEEEEEeC-CHHHHHHHHHHHHHhC
Confidence 56788888765 999999998863 589999986 6788899999888763
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=100.00 E-value=4.7e-49 Score=397.35 Aligned_cols=372 Identities=16% Similarity=0.147 Sum_probs=291.5
Q ss_pred cccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCC---CCCCCC--hHHHHHHHHHHHHc--CCCCCCCCCCCHHHHH
Q 012095 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAG---EPDFDT--PVLIAEAGINAIRE--GFTRYTPNAGTLELRS 139 (471)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g---~~~~~~--p~~v~~a~~~~~~~--~~~~Y~~~~G~~~lr~ 139 (471)
++..++...++.++..+.+..++ +..+++|+|++| +++..+ ++.|.+|......+ ..++|+|..|.++||+
T Consensus 3 ~~~~~~~~~~~d~i~~~~~~~~~--d~~~~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~ 80 (412)
T d1yaaa_ 3 TLFNNIELLPPDALFGIKQRYGQ--DQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTS 80 (412)
T ss_dssp TTTTTCCCCCCCTTHHHHHHHHT--CCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHH
T ss_pred ChhhcCCcCCCChHHHHHHHHhc--CCCCCcEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHHH
Confidence 35567888888888766543332 234458999999 454433 47788776554433 3467999999999999
Q ss_pred HHHHHHHHHhCCCCCCCcEEE--eCChHHHHHHH--HHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCc
Q 012095 140 AICHKLKEENGLSYTPDQILV--SNGAKQSILQA--VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 215 (471)
Q Consensus 140 ~ia~~~~~~~g~~~~~~~i~i--t~G~~~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ 215 (471)
++++++.+.++..+..+.++. +.|+..++..+ +..+++|||+|++++|+|+.|...++.+|++++.+|+..++++.
T Consensus 81 aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~ 160 (412)
T d1yaaa_ 81 NAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKS 160 (412)
T ss_dssp HHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTE
T ss_pred HHHHHHhcccCccccccceeEEecccchhHHHHHHHHHhccCCCCEEecccccCchhHHHHHHcCCceeccccccccccc
Confidence 999999887775544444433 34555554433 33457899999999999999999999999999999998888899
Q ss_pred CCHHHHHhhhc---cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCcccc-----ccC
Q 012095 216 LDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF-----ASL 287 (471)
Q Consensus 216 ld~e~l~~~l~---~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~-----~~~ 287 (471)
++.+.+++.+. ++++++++++||||||.+++++++++|+++|+++ +++||+||+|.++.|++....+. ...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~-~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~ 239 (412)
T d1yaaa_ 161 LDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASK-NHIALFDTAYQGFATGDLDKDAYAVRLGVEK 239 (412)
T ss_dssp ECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCTTTSSSCHHHHTHHHHHHHHH
T ss_pred ccchhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccC-CEEEeecceeeecccCCcccchhhhhhhhhc
Confidence 99999988775 3456788999999999999999999999999999 99999999999999976433222 122
Q ss_pred CCCCCceEEEecCCcccCccchhheeeEcCHHHHHH-----------HHHHHhcccCCCChHHHHHHHHHHhccCC---C
Q 012095 288 PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA-----------CNKIQSQFTSGASSISQKAGVAALGLGYA---G 353 (471)
Q Consensus 288 ~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~-----------l~~~~~~~~~~~~~~~q~aa~~~L~~~~~---~ 353 (471)
....++++++.||||.++++|||+||++++.++++. +.........+++.+.|.++..++.+... .
T Consensus 240 ~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~ 319 (412)
T d1yaaa_ 240 LSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQW 319 (412)
T ss_dssp TTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHH
T ss_pred cccCCCeEEEEecCCccccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHH
Confidence 344688999999999999999999999987544322 22334456778999999999999886321 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCC--CC-CeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEEC
Q 012095 354 GEVVSKMVKAFRERRDFLVKSFGEL--EG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 430 (471)
Q Consensus 354 ~~~~~~~~~~~~~~r~~l~~~L~~~--~g-~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~p 430 (471)
.++++.+++.|+++|+.+.+.|+++ ++ |.+..|+||||+|+.+ +.+++++|++++||++.|
T Consensus 320 ~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~~~gG~F~~~~l----------------s~e~~~~L~~e~~V~~~~ 383 (412)
T d1yaaa_ 320 HKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGL----------------TPQMVKRLEETHAVYLVA 383 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCC----------------CHHHHHHHHHHHCEECCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeCCCceEEEecCc----------------CHHHHHHHHHhCCEEECC
Confidence 3557888999999999999999885 22 6778899999999754 246789999999999999
Q ss_pred CCCCCCCCcEEEEeec-CHHHHHHHHHHHHHHHHhh
Q 012095 431 GDAFGDDTCIRISYAA-SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 431 g~~f~~~~~iRis~~~-~~e~i~~~~~~l~~~l~~~ 465 (471)
|. |||++. ++++++.+.++|+++++.+
T Consensus 384 g~--------Ris~~g~~~~~i~~l~~ai~~v~k~~ 411 (412)
T d1yaaa_ 384 SG--------RASIAGLNQGNVEYVAKAIDEVVRFY 411 (412)
T ss_dssp TS--------EEEGGGCCTTTHHHHHHHHHHHHHHC
T ss_pred CC--------EEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 86 999986 8889999999999988754
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3e-50 Score=404.41 Aligned_cols=365 Identities=18% Similarity=0.149 Sum_probs=288.5
Q ss_pred cccccCCChHHHHHHHHHHHHhcCCCeEEcCCC---CCCCCC--hHHHHHHHHHHHHc--CCCCCCCCCCCHHHHHHHHH
Q 012095 71 RVNAVKPSKTVAITDQATALAQAGVSVIRLAAG---EPDFDT--PVLIAEAGINAIRE--GFTRYTPNAGTLELRSAICH 143 (471)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g---~~~~~~--p~~v~~a~~~~~~~--~~~~Y~~~~G~~~lr~~ia~ 143 (471)
++...+..++..+.+..++ ++.++.|+|+.| +++..+ ++.+.+|......+ ..+.|+|..|+++||+++++
T Consensus 4 ~~~~~~~dpi~~~~~~~~~--d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia~ 81 (397)
T d3tata_ 4 KVDAYAGDPILTLMERFKE--DPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAP 81 (397)
T ss_dssp CCCCCCCCTTTTHHHHHHH--SCCSSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHHH
T ss_pred cCCCCCCCcHHHHHHHHhc--CCCCCcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHHH
Confidence 4444455555555444432 334567999999 344433 57888886654433 34679999999999999999
Q ss_pred HHHHHhCCCCCCCcEEEeCChHHH----HHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHH
Q 012095 144 KLKEENGLSYTPDQILVSNGAKQS----ILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPK 219 (471)
Q Consensus 144 ~~~~~~g~~~~~~~i~it~G~~~a----l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e 219 (471)
++.+.++..+++++|+++.|++++ +.+++..+++|||+|++++|+|++|..+++.+|++++.+|++.++++.+|.+
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~~ 161 (397)
T d3tata_ 82 LLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFN 161 (397)
T ss_dssp HHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSCCHH
T ss_pred HHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhhcCCCCcceecccCccccHHHHHHcCCEEEEEecchhhccccchH
Confidence 999888887888999888776654 5566666789999999999999999999999999999999998888889999
Q ss_pred HHHhhhc---cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccc-cccCCCCCCceE
Q 012095 220 VLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS-FASLPGMWERTL 295 (471)
Q Consensus 220 ~l~~~l~---~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~~~i 295 (471)
.+.+.+. ++++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++....+ ........++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i 240 (397)
T d3tata_ 162 DLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKAR-ELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPAL 240 (397)
T ss_dssp HHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHT-TCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCE
T ss_pred HHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhc-CeeEEeehhhhhhccCCcccchhhhhhhhcCCceE
Confidence 8887754 5677888999999999999999999999999999 9999999999999997543222 222233457899
Q ss_pred EEecCCcccCccchhheeeEcCHHHHHHHHH-------HHhcccCCCChHHHHHHHHHHhccCC---ChHHHHHHHHHHH
Q 012095 296 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNK-------IQSQFTSGASSISQKAGVAALGLGYA---GGEVVSKMVKAFR 365 (471)
Q Consensus 296 ~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~-------~~~~~~~~~~~~~q~aa~~~L~~~~~---~~~~~~~~~~~~~ 365 (471)
++.||||.++++|||+||++++..+++...+ .......+++.+.|.++...+..... ..++++.++++++
T Consensus 241 ~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (397)
T d3tata_ 241 VSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRIL 320 (397)
T ss_dssp ECBCCHHHHTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCcccccccCccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987655444332 33445667889999988888875221 1245667788899
Q ss_pred HHHHHHHHHhcCC-CC--CeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEE
Q 012095 366 ERRDFLVKSFGEL-EG--VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRI 442 (471)
Q Consensus 366 ~~r~~l~~~L~~~-~g--~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRi 442 (471)
++|+.+.+.|... ++ |.+.++++|||+|+.++ .+++++|++++||++.||. ||
T Consensus 321 ~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls----------------~e~~~~L~~e~~V~l~~g~--------Ri 376 (397)
T d3tata_ 321 AMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLS----------------AAQVDRLREEFGVYLIASG--------RM 376 (397)
T ss_dssp HHHHHHHHTTTTTCTTSCTTHHHHCCSSBCCCCCC----------------HHHHHHHTTTTCEECCSSS--------CC
T ss_pred HHHHHHHHHHHHhCCCCceEEEcCCCceEEecCcC----------------HHHHHHHHHhCCEEeCCCC--------EE
Confidence 9999999999885 22 67778999999997653 4678899999999999986 99
Q ss_pred Eeec-CHHHHHHHHHHHHHHH
Q 012095 443 SYAA-SLTTLQAAVERIKKGL 462 (471)
Q Consensus 443 s~~~-~~e~i~~~~~~l~~~l 462 (471)
|++. ++++|+.+.++|.+++
T Consensus 377 ~~a~~~~~~i~~~~~ai~~v~ 397 (397)
T d3tata_ 377 CVAGLNTANVQRVAKAFAAVM 397 (397)
T ss_dssp BTTSCCTTTHHHHHHHHHHHC
T ss_pred EeccCCHHHHHHHHHHHHHhC
Confidence 9987 8889999999888763
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=100.00 E-value=1.4e-48 Score=393.99 Aligned_cols=372 Identities=16% Similarity=0.167 Sum_probs=285.5
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCeEEcCCC---CCCCCC--hHHHHHHHHHHHHc--CCCCCCCCCCCHHHHHH
Q 012095 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAG---EPDFDT--PVLIAEAGINAIRE--GFTRYTPNAGTLELRSA 140 (471)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g---~~~~~~--p~~v~~a~~~~~~~--~~~~Y~~~~G~~~lr~~ 140 (471)
+..++...++.++..+.+..+ ++..+++|+|+.| +++..+ ++.|.++......+ ..++|+|..|+++||++
T Consensus 5 ~~~~~~~~~~~~i~~l~~~~~--~d~~~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lrea 82 (412)
T d1ajsa_ 5 VFAEVPQAQPVLVFKLIADFR--EDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTC 82 (412)
T ss_dssp TTTTCCCCCCCHHHHHHHHHH--TCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHH
T ss_pred hhhhCCcCCCChHHHHHHHHh--cCCCCCcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHHH
Confidence 344566777776666544332 1234578999999 444333 47787776655443 24579999999999999
Q ss_pred HHHHHHHHhCCCCCCCcEE--EeCChHHHHHHHHHH-------hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEe-cCCC
Q 012095 141 ICHKLKEENGLSYTPDQIL--VSNGAKQSILQAVLA-------VCSPGDEVIIPAPFWVSYPEMARIADATPVIL-PTRI 210 (471)
Q Consensus 141 ia~~~~~~~g~~~~~~~i~--it~G~~~al~~~~~~-------l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v-~~~~ 210 (471)
+++++.+.++.+++.++++ .|.|.+.++..+..+ +++|||+|++++|+|++|..+++.+|++++.+ +...
T Consensus 83 ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~~ 162 (412)
T d1ajsa_ 83 ASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWD 162 (412)
T ss_dssp HHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEE
T ss_pred HHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHHHHHHcCCeEEEeecccc
Confidence 9999988887666666554 455555555443333 47999999999999999999999999986654 4445
Q ss_pred CCCCcCCHHHHHhhh---ccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccc--cc
Q 012095 211 SENFLLDPKVLESKL---TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS--FA 285 (471)
Q Consensus 211 ~~~~~ld~e~l~~~l---~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~--~~ 285 (471)
++++.+|.+.+++.+ .++++++++|+||||||.+++++++++|+++|++| +++||+||+|.++.|++..... ..
T Consensus 163 ~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~-~~~ii~De~Y~~l~~~~~~~~~~~~~ 241 (412)
T d1ajsa_ 163 TEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRR-FLFPFFDSAYQGFASGNLEKDAWAIR 241 (412)
T ss_dssp TTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTTTTTSCHHHHTHHHH
T ss_pred cccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhC-CEEEEecHhhhhhhcCCcccchhhhh
Confidence 566788988887764 45778888999999999999999999999999999 9999999999999997643222 12
Q ss_pred cCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHH-------HHHhcccCCCChHHHHHHHHHHhccCC---ChH
Q 012095 286 SLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN-------KIQSQFTSGASSISQKAGVAALGLGYA---GGE 355 (471)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~-------~~~~~~~~~~~~~~q~aa~~~L~~~~~---~~~ 355 (471)
......++++++.|+||.++++|||+||++++.+.++.+. ........+++.+.|.++..++.+... ..+
T Consensus 242 ~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (412)
T d1ajsa_ 242 YFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTG 321 (412)
T ss_dssp HHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHH
T ss_pred hhhhhcccccccccccccccCCCCCccccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHH
Confidence 2223357889999999999999999999998865544433 334455677899999998888864211 134
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC--C-CeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC
Q 012095 356 VVSKMVKAFRERRDFLVKSFGELE--G-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD 432 (471)
Q Consensus 356 ~~~~~~~~~~~~r~~l~~~L~~~~--g-~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~ 432 (471)
+++.++++|+++|+.+.+.|+++. + |.++.+++|||.|+.+ +.+++++|++++||+++||.
T Consensus 322 ~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~~i~~~~G~F~~~~l----------------s~~~v~~L~~e~gV~~vpg~ 385 (412)
T d1ajsa_ 322 NVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGL----------------NPKQVEYLINQKHIYLLPSG 385 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCC----------------CHHHHHHHHHTTCEECCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeecCCCeEEEecCC----------------CHHHHHHHHHhCCEEEeCCC
Confidence 577888999999999999998862 2 5667889999999654 24667889999999999986
Q ss_pred CCCCCCcEEEEeec-CHHHHHHHHHHHHHHHHhhC
Q 012095 433 AFGDDTCIRISYAA-SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 433 ~f~~~~~iRis~~~-~~e~i~~~~~~l~~~l~~~~ 466 (471)
||+++. ++++++.++++|.+++++++
T Consensus 386 --------Ri~~ag~~~~~i~~~a~aI~~av~~~~ 412 (412)
T d1ajsa_ 386 --------RINMCGLTTKNLDYVATSIHEAVTKIQ 412 (412)
T ss_dssp --------EEEGGGCCTTTHHHHHHHHHHHHHHCC
T ss_pred --------eEEeccCCHHHHHHHHHHHHHHHHhcC
Confidence 999986 88999999999999998763
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.6e-48 Score=379.40 Aligned_cols=325 Identities=21% Similarity=0.293 Sum_probs=268.3
Q ss_pred HHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCCh
Q 012095 85 DQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 164 (471)
Q Consensus 85 ~~~~~~~~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~ 164 (471)
+.+..++..++++|+|+.|+|++++|+.+.+++.+++..+..+|.|..|.++||+++++++++. + +++++|++|+|+
T Consensus 9 ~~~~~~~~~~~d~~~l~~~enp~~~p~~i~~~~~~~~~~~~~~~yp~~g~~~Lr~aia~~~~~~-~--v~~d~I~it~G~ 85 (334)
T d2f8ja1 9 KRAYPYETEKRDKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYDSPDEELIEKILSYLDTD-F--LSKNNVSVGNGA 85 (334)
T ss_dssp HHSCCCCCCCCCSEECSSCCCSSCCCHHHHHHHHHHCCTTGGGSCCCSSCHHHHHHHHHHHTCS-S--CCGGGEEEEEHH
T ss_pred HhcccccccCCCceEEECCCCCCCCCHHHHHHHHHHhhcchhcCCCCCCcHHHHHHHHHHhccc-C--CCcceEEecCcc
Confidence 3444444567899999999999999999999999988776666778999999999999998643 3 688999999999
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccC
Q 012095 165 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 244 (471)
Q Consensus 165 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~ 244 (471)
+++|+.+++ +||+|++++|+|..|...++.+|++++.+|++.+.. .+ +...++++++++||||||||.+
T Consensus 86 ~~~l~~l~~----~~d~v~i~~P~y~~~~~~~~~~g~~~v~v~~~~~~~--~~-----~~~~~~~~~l~l~nP~NPtG~~ 154 (334)
T d2f8ja1 86 DEIIYVMML----MFDRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLR--IP-----EVNVGEGDVVFIPNPNNPTGHV 154 (334)
T ss_dssp HHHHHHHHH----HSSEEEECSSCCHHHHHHHHHHTCCEEECCCCTTSC--CC-----CCCCCTTEEEEEESSCTTTCCC
T ss_pred hhHHHHHhh----hccccccccccccccccchhccCCcccccccccccc--cc-----ccccccceEEEeccccccccee
Confidence 999987654 569999999999999999999999999999976432 11 2345678999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHH
Q 012095 245 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC 324 (471)
Q Consensus 245 ~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l 324 (471)
++++++++ + .++ ++++|+||+|.++.+..... .....+++++++||||.++++|+|+||+++++++++++
T Consensus 155 ~s~~~l~~---~-~~~-~~~ii~Dd~~~~~~~~~~~~-----~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~i~~l 224 (334)
T d2f8ja1 155 FEREEIER---I-LKT-GAFVALDEAYYEFHGESYVD-----FLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAY 224 (334)
T ss_dssp CCHHHHHH---H-HTT-TCEEEEECTTGGGTCCCCGG-----GGGTCSSEEEEEESTTTSSCTTTCEEEEEECHHHHHHH
T ss_pred ecHHHhhc---c-ccc-eeEEeecccchhhccccccc-----ccccCceEEEEecCccccchhhhhhhhcccchHHHHHH
Confidence 99766654 3 456 79999999998765433211 11235899999999999999999999999999999999
Q ss_pred HHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcc
Q 012095 325 NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEA 404 (471)
Q Consensus 325 ~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~ 404 (471)
...+.. .+.+.++|.++.+.+.. .+++++.++.|+++|+.+.+.|+++ |+++.+|+|+ |+|+.++..
T Consensus 225 ~~~~~~--~~~s~~~~~~a~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~g~-f~~~~~~~~----- 291 (334)
T d2f8ja1 225 NRVRLP--FNVSYVSQMFAKVALDH----REIFEERTKFIVEERERMKSALREM-GYRITDSRGN-FVFVFMEKE----- 291 (334)
T ss_dssp HHHSCT--TCSCHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHHHHHH-TCEECCCCSS-EEEEECCHH-----
T ss_pred HHhhcc--cccchhhhhhccccccc----ccchhhHHHHHHHHHHHHHHHHHHC-CCeECCCCce-EEEEECCCC-----
Confidence 987654 45789999999888874 7899999999999999999999998 8999888877 588888753
Q ss_pred cCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHH
Q 012095 405 EGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 460 (471)
Q Consensus 405 ~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~~l~~ 460 (471)
+..++++.|+++ ||.+.++ ++|||||++ +.+++++++++|++
T Consensus 292 -------~~~~~~~~L~~~-GI~vr~~-----~~~vRis~g-~~ee~~~l~~~l~~ 333 (334)
T d2f8ja1 292 -------EKERLLEHLRTK-NVAVRSF-----REGVRITIG-KREENDMILRELEV 333 (334)
T ss_dssp -------HHHHHHHHHHHT-TEECEEE-----TTEEEEECC-CHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHC-CCEECCC-----CCeEEEEcC-CHHHHHHHHHHHhc
Confidence 678899988775 9998763 579999997 45677888887765
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.4e-49 Score=394.57 Aligned_cols=366 Identities=15% Similarity=0.134 Sum_probs=279.5
Q ss_pred ccccccCCChHHHHHHHHHHHHhcCCCeEEcCCC---CCC--CCChHHHHHHHHHHHHcCC-CCCCCCCCCHHHHHHHHH
Q 012095 70 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAG---EPD--FDTPVLIAEAGINAIREGF-TRYTPNAGTLELRSAICH 143 (471)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g---~~~--~~~p~~v~~a~~~~~~~~~-~~Y~~~~G~~~lr~~ia~ 143 (471)
.++...++.++..+.+.++. +..+++|+|++| +++ .++++.|++|..+...++. ++|+|..|+++||+++++
T Consensus 3 ~~~~~~p~d~i~~~~~~~~~--d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~ 80 (396)
T d2q7wa1 3 ENITAAPADPILGLADLFRA--DERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQE 80 (396)
T ss_dssp TTCCCCCC-------------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHH
T ss_pred cccccCCCChHHHHHHHHhc--cCCCCcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHH
Confidence 46667777777777655543 234557999999 343 3346889999888877654 579999999999999999
Q ss_pred HHHHHhCCCCCCCcE--EEeCChHHHHHHHHH--HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHH
Q 012095 144 KLKEENGLSYTPDQI--LVSNGAKQSILQAVL--AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPK 219 (471)
Q Consensus 144 ~~~~~~g~~~~~~~i--~it~G~~~al~~~~~--~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e 219 (471)
++.++++..+.++++ ++|.|++.++.+++. ..+++||.|++++|+|++|..+++.+|++++.+++..++++..+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~ 160 (396)
T d2q7wa1 81 LLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFD 160 (396)
T ss_dssp HHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHH
T ss_pred HHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccchHHHHHcCCeeEecccccccccccccc
Confidence 999888765555543 456777666654443 4478999999999999999999999999999999998888888887
Q ss_pred HHHhhh---ccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCcccc-ccCCCCCCceE
Q 012095 220 VLESKL---TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF-ASLPGMWERTL 295 (471)
Q Consensus 220 ~l~~~l---~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~-~~~~~~~~~~i 295 (471)
.+++.. .++++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++...... .......++++
T Consensus 161 ~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~-~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~ 239 (396)
T d2q7wa1 161 ALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEK-GWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELI 239 (396)
T ss_dssp HHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEE
T ss_pred hHHHHHHHhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcC-CeEEEEeccccccccCCccCchHhhhhhhhccccc
Confidence 777654 34677888999999999999999999999999999 99999999999999875433222 22223357889
Q ss_pred EEecCCcccCccchhheeeEcCHHHHHHHHHHH-------hcccCCCChHHHHHHHHHHhccCC---ChHHHHHHHHHHH
Q 012095 296 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-------SQFTSGASSISQKAGVAALGLGYA---GGEVVSKMVKAFR 365 (471)
Q Consensus 296 ~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~-------~~~~~~~~~~~q~aa~~~L~~~~~---~~~~~~~~~~~~~ 365 (471)
++.|+||.++++|||+||++++...++.+.+.. .....+++...|.++..++..... .++++++++++|+
T Consensus 240 ~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (396)
T d2q7wa1 240 VASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQ 319 (396)
T ss_dssp EEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHH
T ss_pred ccccccccccccCCCccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999877666554432 344567888899888887764211 1466788899999
Q ss_pred HHHHHHHHHhcCCC-C--CeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEE
Q 012095 366 ERRDFLVKSFGELE-G--VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRI 442 (471)
Q Consensus 366 ~~r~~l~~~L~~~~-g--~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRi 442 (471)
++|+.+.+.|+++. . |.+..+++|||.|+.++ .+++++|++++||+++||+ ||
T Consensus 320 ~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l~----------------~e~~~~L~~e~gV~~~~g~--------Ri 375 (396)
T d2q7wa1 320 RMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLT----------------KEQVLRLREEFGVYAVASG--------RV 375 (396)
T ss_dssp HHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCC----------------HHHHHHHHHHHCEECCTTC--------EE
T ss_pred HHHHHHHHHHHHhCCCCCcceecCCCeEEEeeCCC----------------HHHHHHHHHhCCEEECCCC--------EE
Confidence 99999999999862 1 56667889999997552 3678899999999999986 99
Q ss_pred Eeec-CHHHHHHHHHHHHHHH
Q 012095 443 SYAA-SLTTLQAAVERIKKGL 462 (471)
Q Consensus 443 s~~~-~~e~i~~~~~~l~~~l 462 (471)
+++. ++++|+.++++|.+++
T Consensus 376 ~~a~l~~~~i~~~~~ai~~v~ 396 (396)
T d2q7wa1 376 NVAGMTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp EGGGCCTTTHHHHHHHHHHHC
T ss_pred EecCCCHHHHHHHHHHHHHhC
Confidence 9987 8899999999998764
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.6e-47 Score=376.05 Aligned_cols=323 Identities=22% Similarity=0.363 Sum_probs=266.7
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHH
Q 012095 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 173 (471)
Q Consensus 94 g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~ 173 (471)
+.+.|.|+.|++++++++.+.+ +...+| |+.+..+||+++++++ | +++++|++|+|+++++..+++
T Consensus 26 ~~~~i~L~~ne~p~~~~~~~~~-------~~l~rY-Pd~~~~~Lr~~ia~~~----g--v~pe~I~it~Gs~eai~~~~~ 91 (354)
T d1fg7a_ 26 GNGDVWLNANEYPTAVEFQLTQ-------QTLNRY-PECQPKAVIENYAQYA----G--VKPEQVLVSRGADEGIELLIR 91 (354)
T ss_dssp TTCSEECSSCCCSSCCCCCCCC-------CCTTSC-CCSSCHHHHHHHHHHH----T--SCGGGEEEESHHHHHHHHHHH
T ss_pred CCCCEEeeCCCCCCCCCHHHHH-------HHHhcC-CCCcHHHHHHHHHHHh----C--CChHHeeeccCchHHHHHHHH
Confidence 4568999999988887654432 235678 7778899999999996 4 689999999999999999999
Q ss_pred HhcCCCC-eEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHH
Q 012095 174 AVCSPGD-EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 252 (471)
Q Consensus 174 ~l~~~gd-~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~ 252 (471)
++++||| .|++++|+|..|...++..|.+++.++.+ ++|.+|++++++.+. ++++|++|+||||||.++++++++.
T Consensus 92 ~~~~pgd~~Vl~~~P~y~~~~~~~~~~g~~v~~~~~~--~~~~~d~~~l~~~~~-~~~~v~~~~pnNPtG~~~~~~~~~~ 168 (354)
T d1fg7a_ 92 AFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTL--DNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRT 168 (354)
T ss_dssp HHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCC--TTSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred HhhccccccccccccccccchhhhhccCceeeccccc--cccccchhhhhhccc-ccceeeccCCCccceeEeeeccccc
Confidence 9999998 58889999999999999999999998875 578999999998774 7899999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhccc
Q 012095 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 332 (471)
Q Consensus 253 i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~ 332 (471)
+.+.+++ +.++|+||+|.++.++... .......+++++++||||.||++|+|+||+++++++++.+.+....+
T Consensus 169 ~~~~~~~--~~~~iidd~~~~f~~~~~~----~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~~~~i~~l~~~~~~~- 241 (354)
T d1fg7a_ 169 LLELTRG--KAIVVADEAYIEFCPQASL----AGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPY- 241 (354)
T ss_dssp HHHHHTT--TCEEEEECTTGGGSGGGCS----GGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHHSCSS-
T ss_pred ccccccc--cccccccccchhhcccccc----chhhcccccceEEeCCccccCCCccccccccccchhhhhhhhhcCcc-
Confidence 9888865 4677779999887654322 12233468999999999999999999999999999999998876654
Q ss_pred CCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCCCCCC
Q 012095 333 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 412 (471)
Q Consensus 333 ~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~ 412 (471)
+.+.+.|.++..++... ...+.....+.+.++|+.+.+.+.+++++....|.+++|+|++++ +
T Consensus 242 -~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p~~~~f~~~~~~--------------~ 304 (354)
T d1fg7a_ 242 -PLSTPVADIAAQALSPQ--GIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK--------------A 304 (354)
T ss_dssp -CSCHHHHHHHHHHTSHH--HHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET--------------T
T ss_pred -chhhHHHHHHHHHHhhh--ccccccccchhhhhHHHHHHHHHHhCCCcceeCCCCceEEEEeCC--------------C
Confidence 46777777776665531 134566777888999999999999997777777888999999986 5
Q ss_pred HHHHHHHHHHcCCEEEECCCCC-CCCCcEEEEeecCHHHHHHHHHHHH
Q 012095 413 SESLCRYLLDKAQVALVPGDAF-GDDTCIRISYAASLTTLQAAVERIK 459 (471)
Q Consensus 413 ~~~l~~~Ll~~~gV~v~pg~~f-~~~~~iRis~~~~~e~i~~~~~~l~ 459 (471)
+.++++.|+++ ||++++|+.| +.++|+|||++ +++++++++++|+
T Consensus 305 ~~~~~~~L~~~-gIlvr~~~~~~~~~~~lRisig-t~ee~~~~l~aLk 350 (354)
T d1fg7a_ 305 SSAVFKSLWDQ-GIILRDQNKQPSLSGCLRITVG-TREESQRVIDALR 350 (354)
T ss_dssp HHHHHHHHHHT-TEECEECTTSTTCTTEEEEECC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CcEEecCCCCCCCCCEEEEEeC-CHHHHHHHHHHHh
Confidence 67899988876 9999998876 45799999996 5567777777665
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=5.9e-47 Score=379.93 Aligned_cols=364 Identities=16% Similarity=0.120 Sum_probs=281.2
Q ss_pred cccccCCChHHHHHHHHHHHHhcCCCeEEcCCCC---CCC--CChHHHHHHHHHHHHcCC-CCCCCCCCCHHHHHHHHHH
Q 012095 71 RVNAVKPSKTVAITDQATALAQAGVSVIRLAAGE---PDF--DTPVLIAEAGINAIREGF-TRYTPNAGTLELRSAICHK 144 (471)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~---~~~--~~p~~v~~a~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~ 144 (471)
.++..++.++..+.+..+. +..+++|+|++|. ++. ++++.|.+|+.+.+.+.. ++|+|..|+++||++++++
T Consensus 4 ~~~~~~~d~i~~l~~~~~~--d~~~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~ 81 (394)
T d2ay1a_ 4 NLKPQAPDKILALMGEFRA--DPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGEL 81 (394)
T ss_dssp GCCCCCCCSHHHHHHHHHH--CCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHH
T ss_pred CCCCCCCChHHHHHHHHhC--CCCCCCEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHH
Confidence 4455556666666554432 3445689999994 332 335889999988877643 5799999999999999999
Q ss_pred HHHHhCCCCCCCcEEEeCCh-HHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHh
Q 012095 145 LKEENGLSYTPDQILVSNGA-KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLES 223 (471)
Q Consensus 145 ~~~~~g~~~~~~~i~it~G~-~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~ 223 (471)
+.+..+.....+.+++++|+ ..++...+..++++||+|++++|+|++|...++.+|++++.+++..++++..+.+.+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~ 161 (394)
T d2ay1a_ 82 ILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKA 161 (394)
T ss_dssp HHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHH
T ss_pred HhccccccccccceeccCchHHHHHHHHHhhhcCCceEEEEecccccchHHHHHHcCCEEEEecccchhcccccchhHHH
Confidence 98877754444444444443 34456666677899999999999999999999999999999999887777788777776
Q ss_pred hh---ccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccC-CCCCCceEEEec
Q 012095 224 KL---TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNG 299 (471)
Q Consensus 224 ~l---~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~-~~~~~~~i~~~S 299 (471)
.. .++++++++++||||||.+++++++++|+++|++| +++||+||+|.++.|++....+.... .....+++++.|
T Consensus 162 ~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~-~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s 240 (394)
T d2ay1a_ 162 DLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKT-GALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAAS 240 (394)
T ss_dssp HHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEE
T ss_pred HHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcc-eEEEEEeccchhhcccccccchhhhhhhhhccccccccc
Confidence 55 34566777899999999999999999999999999 99999999999999875433222211 112467899999
Q ss_pred CCcccCccchhheeeEcCHHHHHHHHH-------HHhcccCCCChHHHHHHHHHHhccCC---ChHHHHHHHHHHHHHHH
Q 012095 300 FSKAFAMTGWRLGYIAGPKHFVAACNK-------IQSQFTSGASSISQKAGVAALGLGYA---GGEVVSKMVKAFRERRD 369 (471)
Q Consensus 300 ~SK~~g~~G~R~G~v~~~~~~i~~l~~-------~~~~~~~~~~~~~q~aa~~~L~~~~~---~~~~~~~~~~~~~~~r~ 369 (471)
+||.++++|||+||++++...++...+ .......+++...|.++...+.+... ..++++.++++|+++|+
T Consensus 241 ~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~ 320 (394)
T d2ay1a_ 241 CSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLRE 320 (394)
T ss_dssp CTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCcccccchhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988766554433 23344567888888888877765321 13557778899999999
Q ss_pred HHHHHhcCCC--C-CeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec
Q 012095 370 FLVKSFGELE--G-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA 446 (471)
Q Consensus 370 ~l~~~L~~~~--g-~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~ 446 (471)
.+.+.|+++. + |.+..|++|||+|+.++ .+++++|++++||+++||. |||++.
T Consensus 321 ~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls----------------~~~~~~L~~~~~V~~~~g~--------Ri~~a~ 376 (394)
T d2ay1a_ 321 QLAGELRDLSGSDRFGFVAEHRGMFSRLGAT----------------PEQVKRIKEEFGIYMVGDS--------RINIAG 376 (394)
T ss_dssp HHHHHHHHHHTSSTTTHHHHCCSSEEECCCC----------------HHHHHHHHHHHCEECCTTC--------EEEGGG
T ss_pred HHHHHHHHhCCCCceeeECCCceeEEecCcC----------------HHHHHHHHHhCCEEecCCC--------EEEecC
Confidence 9999998852 2 67778999999997652 4678899999999999985 999987
Q ss_pred -CHHHHHHHHHHHHHH
Q 012095 447 -SLTTLQAAVERIKKG 461 (471)
Q Consensus 447 -~~e~i~~~~~~l~~~ 461 (471)
++++|+.+.++|.++
T Consensus 377 l~~~~i~~l~~ai~~v 392 (394)
T d2ay1a_ 377 LNDNTIPILARAIIEV 392 (394)
T ss_dssp CCTTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 888998888887764
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=100.00 E-value=8.3e-43 Score=349.67 Aligned_cols=329 Identities=15% Similarity=0.171 Sum_probs=258.0
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHH-cCC--CCCCCCCC----CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIR-EGF--TRYTPNAG----TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~-~~~--~~Y~~~~G----~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
-++++..|+|.+..|-....+...+.- .++ ..|....+ .++|++.|+++.....+...+..+|++++|++++|
T Consensus 57 ~~~~~~~gdp~~~~~~w~~~~~~~~~~~~~~~~~sy~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli 136 (425)
T d2hoxa1 57 CSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLI 136 (425)
T ss_dssp CCEECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHH
T ss_pred ceeeCCCCCCCCCCHHHHhCcccceEEeecccccceecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHH
Confidence 489999999998766555555444432 233 33543332 38999999999887766555666899999999999
Q ss_pred HHHHHHh--------cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCC
Q 012095 169 LQAVLAV--------CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNP 240 (471)
Q Consensus 169 ~~~~~~l--------~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NP 240 (471)
+.++.+| ++|||+|+++.|+|+.|...++..|.+.+ +|.+|.+.++++++++++++++||||||
T Consensus 137 ~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~~~~--------~~~~D~~~~~~~~~~~~~ii~l~sPnNP 208 (425)
T d2hoxa1 137 HGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGY--------VWAGNAANYVNVSNPEQYIEMVTSPNNP 208 (425)
T ss_dssp HHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTE--------EEEEEGGGGTTCSCGGGEEEEEESSCTT
T ss_pred HHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHcCCCCC--------ccCCCHHHHHhhCCCCceEEEEECCCCC
Confidence 9999999 57899999999999999999999887543 3567889999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEc-CHH
Q 012095 241 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKH 319 (471)
Q Consensus 241 tG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~-~~~ 319 (471)
||.+.. +..+ ++.+|.||+|.+..|. .+....+++|+++||||.||++|||+||+++ ++.
T Consensus 209 tG~l~~----------~v~~-~~~~I~DEaY~~~~f~--------~~~~~~~~~Ivl~S~SK~fglaGlRiGw~i~~~~~ 269 (425)
T d2hoxa1 209 EGLLRH----------AVIK-GCKSIYDMVYYWPHYT--------PIKYKADEDILLFTMSKFTGHSGSRFGWALIKDES 269 (425)
T ss_dssp TCCCCC----------CSST-TCEEEEECTTCSTTTS--------CCCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCHH
T ss_pred Ccchhh----------hhhh-CCEEEEeccccCcccc--------chhhhcCCeEEEEeCHHhccCcchheeeEEeCCHH
Confidence 998743 2335 8899999999753332 2334468899999999999999999999765 577
Q ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHhcc--------CCChHHHHHHHHHHHHHHHHHHHHhcCCCCCee--------
Q 012095 320 FVAACNKIQSQFTSGASSISQKAGVAALGLG--------YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-------- 383 (471)
Q Consensus 320 ~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~--------~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~-------- 383 (471)
+++++.+.......+++.++|.++.++|+.. ....++.+..++.++++++.+.+.|.+.+++.+
T Consensus 270 i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~ 349 (425)
T d2hoxa1 270 VYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEY 349 (425)
T ss_dssp HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEE
T ss_pred HHHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccc
Confidence 8889998888888899999999999988641 112356777888999999999999988643322
Q ss_pred ------eCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-CCcEEEEeecCHHHHHHHHH
Q 012095 384 ------SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-DTCIRISYAASLTTLQAAVE 456 (471)
Q Consensus 384 ------~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~-~~~iRis~~~~~e~i~~~~~ 456 (471)
..+..+.|+|+++.. +..+++..+++++||.++||+.||. ++|||||+..++|+++++++
T Consensus 350 ~~f~~~~~~~~~~f~wl~~~~-------------~~~~~~~~lL~e~gI~v~pGs~FG~~~~yvRisl~~~~e~ld~~l~ 416 (425)
T d2hoxa1 350 CNYFRRMRPPSPSYAWVKCEW-------------EEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQLMY 416 (425)
T ss_dssp ETTTTEEECCCCSEEEEEECS-------------GGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSSCHHHHHHHHH
T ss_pred eeeeeeccCCCcceeeeeCCC-------------ChHHHHHHHHHhCCEEEEechhcCCCCCEEEEEecCCHHHHHHHHH
Confidence 123334457887753 2334556677778999999999985 58999999999999999999
Q ss_pred HHHHHHHh
Q 012095 457 RIKKGLLT 464 (471)
Q Consensus 457 ~l~~~l~~ 464 (471)
||++++++
T Consensus 417 rL~~~v~a 424 (425)
T d2hoxa1 417 YLKDMVKA 424 (425)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhc
Confidence 99999863
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.3e-32 Score=272.07 Aligned_cols=333 Identities=15% Similarity=0.104 Sum_probs=235.5
Q ss_pred hcCC-CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHH
Q 012095 92 QAGV-SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQ 170 (471)
Q Consensus 92 ~~g~-~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~ 170 (471)
+.|. .++++......++.++...+++. ..+++..+..++++..++++. + ...+++++|+|+++++..
T Consensus 16 ~~g~~~i~~~~gl~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~---~--~~~e~~~~~~~~~~a~~~ 83 (366)
T d2aeua1 16 EKGRDALYDLSGLSGGFLIDEKDKALLN-------TYIGSSYFAEKVNEYGLKHLG---G--DENDKCVGFNRTSSAILA 83 (366)
T ss_dssp HTCGGGCEECSSCCCCCCCCHHHHHHHT-------STTHHHHHHHHHHHHHHHHHT---C--CTTEEEEEESSHHHHHHH
T ss_pred hhccchHhhhccCCCCCCccHHHHHHHH-------HhcCchhhHHHHHHHHHHHcc---C--CCccEEEEeCCHHHHHHH
Confidence 3555 47888887777776665555432 223355566777777777763 2 245799999999999999
Q ss_pred HHHHhcCCCCeE-EEc-CCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHH
Q 012095 171 AVLAVCSPGDEV-IIP-APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKN 248 (471)
Q Consensus 171 ~~~~l~~~gd~V-lv~-~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~ 248 (471)
++.++. +||.| +++ .|+|++|...+++.|++++... |++++++++++++|+|++++|+||+ +++.+
T Consensus 84 ~l~al~-~~~~vi~~~~~~~~~~~~~~~~l~g~~~v~~~---------d~e~l~~~i~~~tk~i~~~~p~n~~--~~~~~ 151 (366)
T d2aeua1 84 TILALK-PKKVIHYLPELPGHPSIERSCKIVNAKYFESD---------KVGEILNKIDKDTLVIITGSTMDLK--VIELE 151 (366)
T ss_dssp HHHHHC-CSEEEEECSSSSCCTHHHHHHHHTTCEEEEES---------CHHHHHTTCCTTEEEEEECBCTTSC--BCCHH
T ss_pred HHHHhC-CCCEEEEecCCCcchhHHHHHHhcCCeEECCC---------CHHHHHHhcCCCceEEEEEecCCCC--cCCHH
Confidence 998876 55554 444 5899999999999999865321 8999999999999999999999986 46778
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHH
Q 012095 249 LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 328 (471)
Q Consensus 249 ~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~ 328 (471)
++++|+++|++| ++++|+||+|+.+.|+....+..... +..+++.|+||.+ +|||+||+++++++++++....
T Consensus 152 ~l~~i~~ia~~~-~~~~i~De~y~~~~~~~~~~~~~~~~----~~di~~~S~sK~~--~g~~~G~i~~~~~~i~~~~~~~ 224 (366)
T d2aeua1 152 NFKKVINTAKNK-EAIVFVDDASGARVRLLFNQPPALKL----GADLVVTSTDKLM--EGPRGGLLAGKKELVDKIYIEG 224 (366)
T ss_dssp HHHHHHHHHHHH-TCCEEEECTTHHHHHHHTTCCCHHHH----TCSEEEEETTSSS--SSCSCEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHhccC-cEEEEEecCccccccccccCCCHhhc----CceEEEecccccc--cccceeEEEecHHHHHHHHHHH
Confidence 899999999999 99999999999877754433333222 3348899999975 6999999999999999999998
Q ss_pred hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHH----HHHHHHHHHhcCCCCC--eeeCCCcceEEeEecCCccCC
Q 012095 329 SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR----ERRDFLVKSFGELEGV--KMSEPQGAFYLFIDFSTYYGS 402 (471)
Q Consensus 329 ~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~----~~r~~l~~~L~~~~g~--~~~~p~~g~~~~~~~~~~~~~ 402 (471)
..+.++++++.|.++..+|+.. ....+++..+..+ ...+.+......+++. .+..+.+.+|+|.........
T Consensus 225 ~~~g~~~~~~~~~a~~~aL~tl--~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (366)
T d2aeua1 225 TKFGLEAQPPLLAGIYRALKNF--NLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTI 302 (366)
T ss_dssp HTTTCBCCHHHHHHHHHHHHHC--CHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHH
T ss_pred hcccccCCHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHhhhhccccccccccCcccccCccchhccCCCcceee
Confidence 8888889999999998888741 1122222222111 1223333333333333 334456777788776542100
Q ss_pred cccCCCCCCCHHHHHHHHHHcCCEEEECCCCC-CCCCcEEEEeec-CHHH--HHHHHHHHHHHHH
Q 012095 403 EAEGFGKIENSESLCRYLLDKAQVALVPGDAF-GDDTCIRISYAA-SLTT--LQAAVERIKKGLL 463 (471)
Q Consensus 403 ~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f-~~~~~iRis~~~-~~e~--i~~~~~~l~~~l~ 463 (471)
...+..+++.+|++++||.+.||..| +.++++|||++. +.++ .++.++.|.+.++
T Consensus 303 ------~~~~~~~~a~~Ll~~~gV~~ip~~~~p~~~~~lRis~~~~~~~~i~~d~l~~ai~~~lK 361 (366)
T d2aeua1 303 ------NIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIK 361 (366)
T ss_dssp ------HHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHH
T ss_pred ------cccCHHHHHHHHHHhCCEEEEECCCCCCCCCEEEEeccccchhhCCHHHHHHHHHHHHH
Confidence 00145679999999999999999888 456899999987 2222 3444444544444
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.96 E-value=4e-28 Score=239.02 Aligned_cols=301 Identities=15% Similarity=0.190 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcC
Q 012095 137 LRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 216 (471)
Q Consensus 137 lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~l 216 (471)
+++.+.+.+++.+| .+++++|+|+++++..++.++++|||+|++++++|.+....++..|++++.+|++...++.+
T Consensus 48 l~~~~~~~~A~~~g----~e~~~~t~g~t~a~~~~~~al~~~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~~~~~i 123 (364)
T d2e7ja1 48 IHDFIHNQLPKFLG----CDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAI 123 (364)
T ss_dssp HHHHHHTHHHHHTT----SSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCC
T ss_pred HHHHHHHHHHHHhC----cCEEEEECcHHHHHHHHHHHHhCCCcEEEeecccccccchHHHhccceEEEeeecccccccc
Confidence 44444444444444 47899999999999999999999999999999999988888999999999999987778899
Q ss_pred CHHHHHhhhccCC-----cEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCC
Q 012095 217 DPKVLESKLTEKS-----RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 291 (471)
Q Consensus 217 d~e~l~~~l~~~~-----~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~ 291 (471)
|++++++++++++ ++|++++|+||||.+.+ +++|+++|++| |+++++|++|....+ ......+
T Consensus 124 ~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~---l~~I~~ia~~~-~i~livD~a~~~g~~----~~~~~~~---- 191 (364)
T d2e7ja1 124 TPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD---VKKIAKVCSEY-DVPLLVNGAYAIGRM----PVSLKEI---- 191 (364)
T ss_dssp CHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCC---HHHHHHHHHTT-TCCEEEECTTTBTTB----CCCHHHH----
T ss_pred CHHHHHhhhhhhcccCCceEEEeecCCCCCceeec---chhheeccccc-cchhhccccchhhhh----hhccccc----
Confidence 9999999996533 47788999999999999 88999999999 999999999975322 1222222
Q ss_pred CceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcc--------cCCCChHHHHHHHHHHhccCCChHHHHHHHHH
Q 012095 292 ERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF--------TSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (471)
Q Consensus 292 ~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~--------~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~ 363 (471)
+..+++.|++|.++.+| ++||+++++++++.+......+ ..........++.+.+.. ..++++...+.
T Consensus 192 g~D~~~~S~~K~~~~~g-~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~ 267 (364)
T d2e7ja1 192 GADFIVGSGHKSMAASG-PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPH---VRERIKRWDEE 267 (364)
T ss_dssp TCSEEEEEHHHHSSCCS-SCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHH---HHHHGGGHHHH
T ss_pred ccceeeeccccccCCCC-CEEEEEECHHHHHHHHhhccccCcccccccccccchhHHHHHHHHHHH---HHHHHHHHHHH
Confidence 23488999999998666 8999999988877654322111 112233333444444442 12333333333
Q ss_pred HHHHHHHHHHHhcCCCCCeee--CCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEE
Q 012095 364 FRERRDFLVKSFGELEGVKMS--EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIR 441 (471)
Q Consensus 364 ~~~~r~~l~~~L~~~~g~~~~--~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iR 441 (471)
+ ++++++.+.|.++ |+... .|......+...+.......... .....+...|. ..|+... ..+....+|
T Consensus 268 ~-~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~-~~~~~~~---~~g~~~~~~ 338 (364)
T d2e7ja1 268 V-EKARRFAAEMEKL-GIKQLGDNPHNHDLMFFHAEVLYEISKKAK---GGRFFLYRELK-SRKIHGI---KPGLTRYFK 338 (364)
T ss_dssp H-HHHHHHHHHHHHT-TCEEESSSSCCSSEEEEECHHHHHHHHHSS---SGGGHHHHHHH-HTTEECS---CTTCCSEEE
T ss_pred H-HHHHHHHHHHHHc-CCeecCCCCCCcceEEEeccchHHHHHHhh---ccchHHHHHHH-hcCCcee---cCCCcceEE
Confidence 3 4555677778777 66543 23333333433331100000000 01222334344 4466532 233345677
Q ss_pred EEe-ecCHHHHHHHHHHHHHHHHhhC
Q 012095 442 ISY-AASLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 442 is~-~~~~e~i~~~~~~l~~~l~~~~ 466 (471)
++. +.+++++++++++|++++++++
T Consensus 339 ~~~~~~t~edid~~~~~l~ei~~~ys 364 (364)
T d2e7ja1 339 LSTYGLSDEEVDYVLNAFKEIIEKYS 364 (364)
T ss_dssp EECTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred EeccCCCHHHHHHHHHHHHHHHHHhC
Confidence 764 4489999999999999998763
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.2e-26 Score=230.93 Aligned_cols=339 Identities=16% Similarity=0.116 Sum_probs=248.2
Q ss_pred cCCCeEEcCCCC-CCCCChHHHHHHHHHHHHcCCCCCCCC---CCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 93 AGVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFTRYTPN---AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 93 ~g~~~i~l~~g~-~~~~~p~~v~~a~~~~~~~~~~~Y~~~---~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
.|+++|+|++++ ..+..+|.+++++.+++.+...+++.+ .|..++.+.+.+.+.+.+| .+.+++++++.++.
T Consensus 43 dG~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~g----~e~al~~~SG~~An 118 (401)
T d1fc4a_ 43 DGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLG----MEDAILYSSCFDAN 118 (401)
T ss_dssp TSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHT----CSEEEEESCHHHHH
T ss_pred CCCEEEEEEccccccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhhc----CCceEEecchhhhh
Confidence 477899999887 667778999999999987633333332 3344555555555555555 46889999999999
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhh---cc---CCcEEEEcCCCCCcc
Q 012095 169 LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL---TE---KSRLLILCSPSNPTG 242 (471)
Q Consensus 169 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l---~~---~~~~i~i~~p~NPtG 242 (471)
..++.+++.++|.|+++.-+|.++...+...++++..++.. |.+++++.+ ++ ...+|++.+..+..|
T Consensus 119 ~~~i~~l~~~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~~-------d~~~le~~~~~~~~~~~~~~liv~egv~s~~G 191 (401)
T d1fc4a_ 119 GGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANN-------DMQELEARLKEAREAGARHVLIATDGVFSMDG 191 (401)
T ss_dssp HTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECTT-------CHHHHHHHHHHHHHTTCSSEEEEEESEETTTT
T ss_pred HHHHHHhcCCCcEEEeCCcchHHHHccccccCceEEEEcCC-------ChHHHHHHHHHhhhcccCceEEEEcCCCCCCC
Confidence 99999999999999999999999999999999999888753 556665544 22 234555666778889
Q ss_pred cCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHH
Q 012095 243 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA 322 (471)
Q Consensus 243 ~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~ 322 (471)
...+ +++|.++|++| ++++|+||+|..+.++..+...........+..++++||||.+| |...|++.+++++++
T Consensus 192 ~~~~---L~~l~~L~~~~-~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~g--g~~Gg~v~g~~~~~~ 265 (401)
T d1fc4a_ 192 VIAN---LKGVCDLADKY-DALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALG--GASGGYTAARKEVVE 265 (401)
T ss_dssp EECC---HHHHHHHHHHT-TEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC--SSSCEEEEECHHHHH
T ss_pred chhh---hhHHHHHHhhc-CcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccc--cCCcccccCCHHHHH
Confidence 9998 99999999999 99999999999988875443322222222456689999999994 333499999999999
Q ss_pred HHHHHHhc--ccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCcc
Q 012095 323 ACNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYY 400 (471)
Q Consensus 323 ~l~~~~~~--~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~ 400 (471)
.+...... +...+++....++..++.. ....++++++++++.+++.+.+.+. |+.+..+++.+ +.+.+.+.
T Consensus 266 ~l~~~~~~~~~s~~l~p~~~~aa~~~l~~----~~~~~~~~~~l~~~~~~~~~~l~~~-g~~~~~~~~pI-v~v~~~~~- 338 (401)
T d1fc4a_ 266 WLRQRSRPYLFSNSLAPAIVAASIKVLEM----VEAGSELRDRLWANARQFREQMSAA-GFTLAGADHAI-IPVMLGDA- 338 (401)
T ss_dssp HHHHHCHHHHHSCCCCHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHHHHT-TCCBCCSSSSE-EEEEEECH-
T ss_pred HHHcCChhhhhcCCCCHHHHHHHHhhhcc----cccCHHHHHHHHHHHHHHHhhhccc-CCccCCCCCCE-EEEEECCH-
Confidence 88765332 3344556666666666653 2334567788888888888888887 77666555554 44445432
Q ss_pred CCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012095 401 GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAA--SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~---~~~iRis~~~--~~e~i~~~~~~l~~~l~~~~ 466 (471)
....+++++|+++ ||++.+-.+... ...+|+++.. |+|+|+++++.|+++.+++.
T Consensus 339 ----------~~a~~~~~~L~~~-Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~ev~~~lg 398 (401)
T d1fc4a_ 339 ----------VVAQKFARELQKE-GIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLG 398 (401)
T ss_dssp ----------HHHHHHHHHHHHT-TEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ----------HHHHHHHHHHHHC-CceEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHhC
Confidence 1355788998876 999887554332 2459999986 99999999999999998864
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.95 E-value=6.1e-27 Score=231.06 Aligned_cols=335 Identities=15% Similarity=0.126 Sum_probs=246.2
Q ss_pred CCCeEEcCCCC-CCCCChHHHHHHHHHHHHcCCCCCC---CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 94 GVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFTRYT---PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 94 g~~~i~l~~g~-~~~~~p~~v~~a~~~~~~~~~~~Y~---~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
++++++|++++ ..+..++.++++..+++.+.-.+.+ ...|..++.+.+.+.+++++| . +..++.+.+..+..
T Consensus 44 ~~~~~~FsSndYLGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g---~-e~all~~sG~~An~ 119 (396)
T d2bwna1 44 KQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ---K-EAALVFSSAYNAND 119 (396)
T ss_dssp EEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTT---C-SEEEEESCHHHHHH
T ss_pred CeEEEEEEcccccCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHhC---C-CceeeeecchHHHH
Confidence 45799999998 7787889999999999876212222 235666777777777777776 3 45555555555666
Q ss_pred HHHHHh--cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc---c-CCcEEEEcCCCCCccc
Q 012095 170 QAVLAV--CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT---E-KSRLLILCSPSNPTGS 243 (471)
Q Consensus 170 ~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~---~-~~~~i~i~~p~NPtG~ 243 (471)
.++.++ +.+||.|+.+.-.|.+....+++.+++++.++.+ |.+++++.+. + +.++|++....+++|.
T Consensus 120 ~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~Hn-------d~~~l~~l~~~~~~~~~~~iv~egvySmdGd 192 (396)
T d2bwna1 120 ATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADDPAAPKLIAFESVYSMDGD 192 (396)
T ss_dssp HHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSCTTSCEEEEEESBCTTTCC
T ss_pred HHHHHHhcccCCCceeehhhhhhccchhhhccccCceEeecc-------hHHHhhhHHhhhcccCceeEEEEeeccCccc
Confidence 677776 4788999999999999999999999999988753 6666666553 2 3456667888999999
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHH
Q 012095 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 323 (471)
Q Consensus 244 ~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~ 323 (471)
+.| +.+|++++++| ++++++||+|+..+++..+......+....+..|+++||||++|..| ||+.+++++++.
T Consensus 193 ~ap---l~~l~~L~~~y-~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~G---g~v~~~~~~i~~ 265 (396)
T d2bwna1 193 FGP---IKEICDIAEEF-GALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG---GYIAASARMVDA 265 (396)
T ss_dssp BCC---HHHHHHHHHHH-TCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC---EEEEECHHHHHH
T ss_pred ccc---cHhHHHHhhhh-cceeeeccceeeeeeccccccchhhcCCceeeeeeeecccccccccc---cccchhHHHHHH
Confidence 999 99999999999 99999999999988875544433333223456799999999999899 999999999999
Q ss_pred HHHHHhcccC--CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccC
Q 012095 324 CNKIQSQFTS--GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG 401 (471)
Q Consensus 324 l~~~~~~~~~--~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~ 401 (471)
+......+.+ .+++....++.++++.. .....++.+..++.+.+++.+.|.++ |+.+....+.. +.+.+.+.
T Consensus 266 l~~~~~~~ifStalpp~~~aa~~~al~i~--~~~~~~~~r~~l~~~~~~~~~~l~~~-g~~~~~~~spI-vpv~ig~~-- 339 (396)
T d2bwna1 266 VRSYAPGFIFSTSLPPAIAAGAQASIAFL--KTAEGQKLRDAQQMHAKVLKMRLKAL-GMPIIDHGSHI-VPVVIGDP-- 339 (396)
T ss_dssp HHHHCHHHHTSBCCCHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSSSC-EEEECCCH--
T ss_pred HHhhcchhhhcccCcHHHHHHHHHHHHHh--hcchHHHHHHHHHHHHHHHHHHHHhc-CCCcCCCCCCE-EEEEeCCH--
Confidence 9876554333 33444444455555431 12334566777788888888888877 77766544443 44555432
Q ss_pred CcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCC---CcEEEEeec--CHHHHHHHHHHHHHH
Q 012095 402 SEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD---TCIRISYAA--SLTTLQAAVERIKKG 461 (471)
Q Consensus 402 ~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~---~~iRis~~~--~~e~i~~~~~~l~~~ 461 (471)
....+++++|++++||++.+..+...+ ..+|+++.. ++++|+++++.|+++
T Consensus 340 ---------~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~i 395 (396)
T d2bwna1 340 ---------VHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLL 395 (396)
T ss_dssp ---------HHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence 145678888887679999887765532 579999987 999999999999874
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.95 E-value=5.6e-27 Score=232.55 Aligned_cols=333 Identities=19% Similarity=0.167 Sum_probs=228.6
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHc----CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHH
Q 012095 97 VIRLAAGEPDFDTPVLIAEAGINAIRE----GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 172 (471)
Q Consensus 97 ~i~l~~g~~~~~~p~~v~~a~~~~~~~----~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~ 172 (471)
.+.|..+... +.|..+.+++.+.+.. +...|.......++.+.+.+.+++.+| .++++|++|+|+++++..++
T Consensus 8 ~~yld~~~~~-~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~--~~~~~i~~~~g~t~a~~~~~ 84 (381)
T d1elua_ 8 KTYFNFGGQG-ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFN--VDPNTITITDNVTTGCDIVL 84 (381)
T ss_dssp SEECCTTTCC-CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTT--SCGGGEEEESSHHHHHHHHH
T ss_pred CEEeeCCccc-CCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhC--CCcccEEEECChHHHhhhcc
Confidence 4667666433 3466777887776642 222232222233444444444555556 46789999999999999999
Q ss_pred HHh-cCCCCeEEEcCCCCCChHH----HHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCH
Q 012095 173 LAV-CSPGDEVIIPAPFWVSYPE----MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247 (471)
Q Consensus 173 ~~l-~~~gd~Vlv~~p~y~~~~~----~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~ 247 (471)
.++ .++||+|+++++.|++... .++..|++++.+|.+.......+.+.++++++++++++++++++||||..++
T Consensus 85 ~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~~t~~v~i~~~~n~tG~~~~- 163 (381)
T d1elua_ 85 WGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLP- 163 (381)
T ss_dssp HHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCC-
T ss_pred hhhhhcCCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhcccccccccccccccccccch-
Confidence 988 5799999999999986543 4566799999999875444333467788888999999999999999999999
Q ss_pred HHHHHHHHHHHhC---CCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHH
Q 012095 248 NLLDEIARIVAKH---PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC 324 (471)
Q Consensus 248 ~~l~~i~~l~~~~---~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l 324 (471)
+++|.++|++| .++++++|.++... .....+.. .+..+++.|+.|.++ ...++|+++.+++..+.+
T Consensus 164 --~~~I~~l~~~~~~~~~~~~~vD~~~~~g----~~~~~~~~----~~~D~~~~s~~K~~~-~p~G~g~l~~~~~~~~~~ 232 (381)
T d1elua_ 164 --LAEIMAVCRRHQGNYPVRVLVDGAQSAG----SLPLDFSR----LEVDYYAFTGHKWFA-GPAGVGGLYIHGDCLGEI 232 (381)
T ss_dssp --HHHHHHHHHHCCSSSCCEEEEECTTTBT----TBCCCTTT----SCCSEEEEESSSTTC-CCTTCEEEEECTTTGGGC
T ss_pred --hhHHHHHHhhcccccccccccccccccc----cccccccc----ccccccccccccccc-ccchhhHHHhhHHHHHhc
Confidence 77888888875 26899999998752 22222222 245589999999996 445689998887766554
Q ss_pred HHH----------------------HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCe
Q 012095 325 NKI----------------------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 382 (471)
Q Consensus 325 ~~~----------------------~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~ 382 (471)
... ......+++.....++.++++... .....+...++..++++++.+.|++++|++
T Consensus 233 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~-~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~ 311 (381)
T d1elua_ 233 NPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQ-RQGTAEERYQAICQRSEFLWRGLNQLPHVH 311 (381)
T ss_dssp CCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHSTTEE
T ss_pred CcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHH-HhcccccchhhhhhHHHHHHHHHhcCCCeE
Confidence 210 011122455555566666665310 011134456778888999999999998987
Q ss_pred eeC---CCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHH
Q 012095 383 MSE---PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVER 457 (471)
Q Consensus 383 ~~~---p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~ 457 (471)
+.. +.+++ +++.++.. .+.+.+.+.|.+ .||.+.. ++.++++|+|++. +.+|++++++.
T Consensus 312 ~~~~~~~~~~~-vsf~~~~~-----------~~~~~i~~~L~~-~gi~v~~---~~~~~~lRis~~~~nt~edid~ll~~ 375 (381)
T d1elua_ 312 CLATSAPQAGL-VSFTVDSP-----------LGHRAIVQKLEE-QRIYLRT---IADPDCIRACCHYITDEEEINHLLAR 375 (381)
T ss_dssp ESCSSCCSSSE-EEEEECSS-----------SCHHHHHHHHHH-TTEECEE---ETTTTEEEEECCTTCCHHHHHHHHHH
T ss_pred ecCCCCccccE-EEEEcCCC-----------CCHHHHHHHHHh-CCcEEEe---cCCCCEEEEecCCCCCHHHHHHHHHH
Confidence 753 45665 45566543 256778776655 5998754 3457899999886 88999999998
Q ss_pred HHHH
Q 012095 458 IKKG 461 (471)
Q Consensus 458 l~~~ 461 (471)
|+++
T Consensus 376 l~e~ 379 (381)
T d1elua_ 376 LADF 379 (381)
T ss_dssp HTTC
T ss_pred HHhh
Confidence 8653
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=3.8e-26 Score=226.11 Aligned_cols=333 Identities=12% Similarity=0.076 Sum_probs=245.7
Q ss_pred cCCCeEEcCCCC-CCCCChHHHHHHHHHHHHcCCCCCC---CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 93 AGVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFTRYT---PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 93 ~g~~~i~l~~g~-~~~~~p~~v~~a~~~~~~~~~~~Y~---~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
.|+++++|++++ ..+...|.+++++.+++.+--.+++ ...|..++.+.+.+.+++.+| .+..++.+++..+.
T Consensus 36 ~g~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~g----~e~al~~~SG~~an 111 (383)
T d1bs0a_ 36 DDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLG----YSRALLFISGFAAN 111 (383)
T ss_dssp TTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT----CSEEEEESCHHHHH
T ss_pred CCeEEEEEEcccccccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhcC----CCceEEecccchhh
Confidence 477899999987 6777788999999999876212221 123555555555555555555 35777888888888
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc---cCCcEEEEcCCCCCcccCC
Q 012095 169 LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT---EKSRLLILCSPSNPTGSVY 245 (471)
Q Consensus 169 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~---~~~~~i~i~~p~NPtG~~~ 245 (471)
..++.+++.++|.|+++...|.++...++..+++++.++.+ |++++++.+. ++.++|+++.+++++|.+.
T Consensus 112 ~~~i~al~~~~d~v~~d~~~h~si~~g~~~~~~~~~~~~hn-------d~~~le~~l~~~~~~~~~vv~e~v~s~~G~i~ 184 (383)
T d1bs0a_ 112 QAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHN-------DVTHLARLLASPCPGQQMVVTEGVFSMDGDSA 184 (383)
T ss_dssp HHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECTT-------CHHHHHHHHHSCCSSCEEEEEESBCTTTCCBC
T ss_pred HHHHHhhcCCCceEEeeccccHHHhhccccCCCcceEecch-------HHHHHHHHhcccCCCceEEEecCCCCCCCccc
Confidence 88999999999999999999999999999999999988852 8888888774 3456777899999999999
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHH
Q 012095 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 325 (471)
Q Consensus 246 ~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~ 325 (471)
+ +++|.++|++| ++++++||+|+..+++..+....... + ....+.+.||||.+|..| |++.++.++++.++
T Consensus 185 p---l~~l~~l~~~~-~~~livDeah~~gv~G~~g~G~~~~~-~-~~~~~~~~t~~ka~g~~G---g~v~~~~~~~~~l~ 255 (383)
T d1bs0a_ 185 P---LAEIQQVTQQH-NGWLMVDDAHGTGVIGEQGRGSCWLQ-K-VKPELLVVTFGKGFGVSG---AAVLCSSTVADYLL 255 (383)
T ss_dssp C---HHHHHHHHHHT-TCEEEEECTTTTTTSSGGGCCHHHHT-T-CCCSEEEEESSSTTSSCC---EEEEECHHHHHHHH
T ss_pred c---hhHHHHHHHhc-CcEEEeecceeeeecCCcccchHHHc-C-Cccccccccccccccccc---cccccchhHHHHHH
Confidence 9 88899999999 99999999999887764433222222 2 234467889999999888 99999999999987
Q ss_pred HHHhcc--cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCc
Q 012095 326 KIQSQF--TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSE 403 (471)
Q Consensus 326 ~~~~~~--~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~ 403 (471)
.....+ +...++....++.+++... .....+..+.+++++..++.+.|.++ |+.+....+.+ +.+.+++.
T Consensus 256 ~~~~~~~~s~~~~p~~~aa~~~a~~~~--~~~~~~~~~~~l~~~~~~~~~~l~~~-g~~~~~~~s~I-i~v~~g~~---- 327 (383)
T d1bs0a_ 256 QFARHLIYSTSMPPAQAQALRASLAVI--RSDEGDARREKLAALITRFRAGVQDL-PFTLADSCSAI-QPLIVGDN---- 327 (383)
T ss_dssp HHCHHHHSSBCCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHTTS-SCEECSCCSSB-CCEEEESH----
T ss_pred hhchhhhhcccccchHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHhc-CCccCCCCCCE-EEEEECCH----
Confidence 664333 2233444444445555431 12335567778888999999999988 77776555544 34444332
Q ss_pred ccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeec--CHHHHHHHHHHHHHH
Q 012095 404 AEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAA--SLTTLQAAVERIKKG 461 (471)
Q Consensus 404 ~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~---~~~iRis~~~--~~e~i~~~~~~l~~~ 461 (471)
..+.++.++|+++ ||++.+..+... ...+|+++.. ++|+|+++++.|..+
T Consensus 328 -------~~a~~~~~~L~~~-Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 328 -------SRALQLAEKLRQQ-GCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 382 (383)
T ss_dssp -------HHHHHHHHHHHHT-TEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHC-CceEEEEcCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 1456888998876 999988665443 2469999997 999999999988754
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=3.8e-26 Score=227.37 Aligned_cols=327 Identities=17% Similarity=0.176 Sum_probs=224.3
Q ss_pred EEcCCCCCCCCChHHHHHHHHHHHHcCCCCCC-CCCC-----------CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChH
Q 012095 98 IRLAAGEPDFDTPVLIAEAGINAIREGFTRYT-PNAG-----------TLELRSAICHKLKEENGLSYTPDQILVSNGAK 165 (471)
Q Consensus 98 i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~-~~~G-----------~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~ 165 (471)
|.|..+... +.++.+++++.+.+.+.. .|+ |..+ +.++|+.+++++ | .++++|++|+|++
T Consensus 4 iYlD~aa~~-p~~~~v~ea~~~~~~~~~-~~~np~~~~~~~~~~~~~~~~~~R~~iA~~l----g--~~~~~I~~~~~~t 75 (391)
T d1p3wa_ 4 IYLDYSATT-PVDPRVAEKMMQFMTMDG-TFGNPASRSHRFGWQAEEAVDIARNQIADLV----G--ADPREIVFTSGAT 75 (391)
T ss_dssp EECBTTTCC-CCCHHHHHHHHTTTSTTS-CCCCTTCTTSHHHHHHHHHHHHHHHHHHHHH----T--CCGGGEEEESSHH
T ss_pred EEeeCcccc-CCCHHHHHHHHHHHHhcc-ccCCCchhhhHHHHHHHHHHHHHHHHHHHHc----C--CCCCcEEEECCHH
Confidence 455554432 457889999988765432 333 3222 124555566655 5 4788999999999
Q ss_pred HHHHHHHHHh----cCCCCeEEEcCCCCCChHHHH---HHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCC
Q 012095 166 QSILQAVLAV----CSPGDEVIIPAPFWVSYPEMA---RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 238 (471)
Q Consensus 166 ~al~~~~~~l----~~~gd~Vlv~~p~y~~~~~~~---~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~ 238 (471)
+++..++.++ .++||+|++.++.|+++.... +..|++++.+|.+. .+.+|+++++++++++|++|++++++
T Consensus 76 ~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~~~~~i~~~T~lv~is~~~ 153 (391)
T d1p3wa_ 76 ESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR--NGIIDLKELEAAMRDDTILVSIMHVN 153 (391)
T ss_dssp HHHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT--TSCCCHHHHHHHCCTTEEEEECCSBC
T ss_pred HHHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCC--CCeEcHHHHHHhCCCCcEEEEEECCC
Confidence 9999888765 479999999999999876544 45699999999874 34589999999999999999999999
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCH
Q 012095 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 318 (471)
Q Consensus 239 NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~ 318 (471)
||||.+++ +++|+++|++| ++++++|.+|.... ....+.. .+..+++.|+.|.+|.+| +|+++.++
T Consensus 154 n~tG~~~~---~~~I~~~~~~~-~~~~ivD~~~~~g~----~~~d~~~----~~~D~~~~s~~k~~g~~g--~g~~~~~~ 219 (391)
T d1p3wa_ 154 NEIGVVQD---IAAIGEMCRAR-GIIYHVDATQSVGK----LPIDLSQ----LKVDLMSFSGHKIYGPKG--IGALYVRR 219 (391)
T ss_dssp TTTCCBCC---HHHHHHHHHHH-TCEEEEECTTTBTT----BCCCTTT----SCCSEEEEESTTTTSCSS--CEEEEECB
T ss_pred CCCeeECC---HHHHHHHhccC-CcEEEEeeccccCC----ccccchh----ccccccccccccccCCCc--eEEEEEec
Confidence 99999999 88999999999 99999999997532 1222222 233478889999987565 68887766
Q ss_pred HHHHHHHHH-------HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC--CC-c
Q 012095 319 HFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE--PQ-G 388 (471)
Q Consensus 319 ~~i~~l~~~-------~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~--p~-~ 388 (471)
+....+... ........+.....+....+.. ..+......+++++.++.+.+.|.++++..+.. +. .
T Consensus 220 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 296 (391)
T d1p3wa_ 220 KPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRI---AKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGA 296 (391)
T ss_dssp TTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSC
T ss_pred chhcccCCcccCCccccCcccCcchhhhhhhhhhhhhH---HHHHhhHHHHHHHHHHHHHHHHHHhhcCeeecccccccC
Confidence 544332211 1112223333333333333332 134455556777888888999998886654422 12 2
Q ss_pred ceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------------------CCcEEEEeec--C
Q 012095 389 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------------------DTCIRISYAA--S 447 (471)
Q Consensus 389 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~-------------------~~~iRis~~~--~ 447 (471)
...+.+.++.. +...+...| .++.+..|..+.. .++||+|++. |
T Consensus 297 ~~~~~~~~~~~------------~~~~~~~~l---~~i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt 361 (391)
T d1p3wa_ 297 PNILNVSFNYV------------EGESLIMAL---KDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTT 361 (391)
T ss_dssp TTEEEEEETTS------------CHHHHHHHT---TTEECBCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCC
T ss_pred ceEEEEEeCCC------------ChHHHHHHh---CCCEEEccccccCCccchhHHHHHcCCCccccCCEEEEecCCCCC
Confidence 23334445542 566776655 3677776654321 1469999997 8
Q ss_pred HHHHHHHHHHHHHHHHhhC
Q 012095 448 LTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 448 ~e~i~~~~~~l~~~l~~~~ 466 (471)
++|++.+++.|++++++++
T Consensus 362 ~edid~l~~~l~~~l~~lr 380 (391)
T d1p3wa_ 362 EEEIDYTIELVRKSIGRLR 380 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998764
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=1.9e-26 Score=223.48 Aligned_cols=331 Identities=18% Similarity=0.164 Sum_probs=224.0
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhc
Q 012095 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC 176 (471)
Q Consensus 97 ~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~ 176 (471)
+|||..-.-.-| +|++++|+.++. .+...|++++...+|++.+++++ | .+++++++|+++++..++++++
T Consensus 1 ~~~~~~~~~t~p-~p~v~~A~~~a~-~g~~~yg~~p~~~~le~~lA~~~----G----~~~~~~~~sGt~A~~~al~a~~ 70 (343)
T d1m6sa_ 1 MIDLRSDTVTKP-TEEMRKAMAQAE-VGDDVYGEDPTINELERLAAETF----G----KEAALFVPSGTMGNQVSIMAHT 70 (343)
T ss_dssp CEECSCGGGCCC-CHHHHHHHHTCC-CCCGGGTCCHHHHHHHHHHHHHT----T----CSEEEEESCHHHHHHHHHHHHC
T ss_pred CcccccccCCCC-CHHHHHHHHhhh-cCCcccCCCHHHHHHHHHHHHHH----C----CCeEEEeCCHHHHHHHHHHHHh
Confidence 356655443333 467889887653 24566888888889999998885 4 3578999999999999999999
Q ss_pred CCCCeEEEcCCCCCChH---HHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccC------CcEE-EEcCCCCCcccCCC
Q 012095 177 SPGDEVIIPAPFWVSYP---EMARIADATPVILPTRISENFLLDPKVLESKLTEK------SRLL-ILCSPSNPTGSVYP 246 (471)
Q Consensus 177 ~~gd~Vlv~~p~y~~~~---~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~------~~~i-~i~~p~NPtG~~~~ 246 (471)
++||.+++..+.+..+. ......+..++.++.. .+..|++.+++.+... +..+ +.+.++|++|.+++
T Consensus 71 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (343)
T d1m6sa_ 71 QRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGK---NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVP 147 (343)
T ss_dssp CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEECEE---TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCC
T ss_pred ccCCceeccccccceeeecccccccccceeeccccc---cCccCHHHHHHhhhhhhcccccccccccccccccCCceecC
Confidence 99999999998776443 3445556666666643 3447999999988643 3333 45677899999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHH
Q 012095 247 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 326 (471)
Q Consensus 247 ~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~ 326 (471)
.+++++|+++|++| ++++++|++|..+............. ......+ ++|..+..|.+.|++++..+.+.....
T Consensus 148 ~~~l~~i~~~~~~~-g~~~~~D~a~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~ 221 (343)
T d1m6sa_ 148 LENIKEICTIAKEH-GINVHIDGARIFNASIASGVPVKEYA---GYADSVM--FCLSKGLCAPVGSVVVGDRDFIERARK 221 (343)
T ss_dssp HHHHHHHHHHHHHH-TCEEEEEETTHHHHHHHHCCCHHHHH---HTCSEEE--EESSSTTCCSSCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CeEEEeccccccccccccccchhhhc---ccccccc--ccccccccccccccccccHHHHhhhHh
Confidence 99999999999999 99999999998654322111110001 1112233 333344466778999999988887776
Q ss_pred HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccC
Q 012095 327 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEG 406 (471)
Q Consensus 327 ~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~ 406 (471)
.......+.+.....++........ ...+. ..+.+++..+.+.+.++.+.....|..++++|+++++..
T Consensus 222 ~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------ 290 (343)
T d1m6sa_ 222 ARKMLGGGMRQAGVLAAAGIIALTK-MVDRL----KEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLK------ 290 (343)
T ss_dssp HHHHHTCCCSSTHHHHHHHHHHHHH-SSTTH----HHHHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECTTSS------
T ss_pred hCcccccccchhHHHHHhhhhhhhh-hHHHH----HHHHHHHHHhhhHHHHhccCccCCCCCceEEEEEeCCCc------
Confidence 6554444444444333333222100 11222 223344444455555543444445556677899887531
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012095 407 FGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 407 ~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~~ 466 (471)
.+..+|++.|.++ ||.+.|.. ++++|++++. ++|+|+++++.|+++++++.
T Consensus 291 ----~~a~~l~~~L~~~-Gi~v~~~~----~~~iRi~~~~~~t~edid~~v~~l~~v~~~~~ 343 (343)
T d1m6sa_ 291 ----VNAHGFIEALRNS-GVLANAVS----DTEIRLVTHKDVSRNDIEEALNIFEKLFRKFS 343 (343)
T ss_dssp ----SCHHHHHHHHHHH-TEECEEEE----TTEEEEECCTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred ----ccHHHHHHHHHHC-CCEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 2678999998877 99998853 5689998875 89999999999999999874
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=3.2e-23 Score=206.90 Aligned_cols=332 Identities=16% Similarity=0.181 Sum_probs=241.2
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCC-----------CHHHHHHHHHHHHHHhCCCCCCCcEEEeC
Q 012095 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAG-----------TLELRSAICHKLKEENGLSYTPDQILVSN 162 (471)
Q Consensus 94 g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G-----------~~~lr~~ia~~~~~~~g~~~~~~~i~it~ 162 (471)
+++++.|..+... +.|+.+.+++.+.+.+...+ |..+ ..+.|+.++++ .|.. .+++|++|.
T Consensus 20 ~~~~iYld~a~~~-~~p~~v~~~~~~~~~~~~~n--~~~~~~~~~~~~~~~~e~~R~~ia~~----l~~~-~~~~i~~~~ 91 (405)
T d1jf9a_ 20 GLPLAYLDSAASA-QKPSQVIDAEAEFYRHGYAA--VHRGIHTLSAQATEKMENVRKRASLF----INAR-SAEELVFVR 91 (405)
T ss_dssp TEECEECCTTTCC-CCCHHHHHHHHHHHHHTCCC--CSSCSSHHHHHHHHHHHHHHHHHHHH----TTCS-CGGGEEEES
T ss_pred CCCeEEEeCcccc-CCCHHHHHHHHHHHHhccCC--CccchhHHHHHHHHHHHHHHHHHHHH----cCCC-CcccccccC
Confidence 4456888766654 45888999998877653222 1111 22344444444 4432 458999999
Q ss_pred ChHHHHHHHHHHh----cCCCCeEEEcCCCCCChH----HHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEE
Q 012095 163 GAKQSILQAVLAV----CSPGDEVIIPAPFWVSYP----EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLIL 234 (471)
Q Consensus 163 G~~~al~~~~~~l----~~~gd~Vlv~~p~y~~~~----~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i 234 (471)
|+|+++..++..+ ..+||+|++.+-.|++.. ..++..|++++.+|+++++ .+|++.++++++++|+++++
T Consensus 92 ~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g--~~~~~~~~~~i~~~t~lv~~ 169 (405)
T d1jf9a_ 92 GTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDG--TLQLETLPTLFDEKTRLLAI 169 (405)
T ss_dssp SHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTS--CBCGGGHHHHCCTTEEEEEE
T ss_pred cHHHHHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCCC--cCCHHHHHHhccCCcEEEEE
Confidence 9999998877763 578999999999998744 4456779999999997643 58999999999999999999
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheee
Q 012095 235 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYI 314 (471)
Q Consensus 235 ~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v 314 (471)
+..+|.||..+| +++|+++|+++ ++++++|.++.. |.....+..+ +..+++.|+.|.+|-+| +|++
T Consensus 170 ~~v~~~tG~~~p---i~~i~~~~~~~-g~~~~vD~~q~~----g~~~id~~~~----~~D~~~~s~hK~~Gp~G--~g~l 235 (405)
T d1jf9a_ 170 THVSNVLGTENP---LAEMITLAHQH-GAKVLVDGAQAV----MHHPVDVQAL----DCDFYVFSGHKLYGPTG--IGIL 235 (405)
T ss_dssp ESBCTTTCCBCC---HHHHHHHHHHT-TCEEEEECTTTT----TTSCCCHHHH----TCSEEEEEGGGTTSCSS--CEEE
T ss_pred ecCCCcccccCc---hHHhhhHHHHc-CCeeecccceec----cccccchhhc----CCceeeccccccccCCC--ceee
Confidence 999999999999 99999999999 999999999875 2222233332 33489999999987555 8999
Q ss_pred EcCHHHHHHHHHH----------------------HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHH
Q 012095 315 AGPKHFVAACNKI----------------------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 372 (471)
Q Consensus 315 ~~~~~~i~~l~~~----------------------~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~ 372 (471)
+.++++++.+... .+....+++.....++.++++.. .+...+.+.++.....+++.
T Consensus 236 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~--~~~g~~~i~~~~~~L~~~~~ 313 (405)
T d1jf9a_ 236 YVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYV--SALGLNNIAEYEQNLMHYAL 313 (405)
T ss_dssp EECHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHH
T ss_pred eechhhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHH--HHhChHHHHHHHHHHHHHHH
Confidence 9998877653210 11112346666666777776631 12235666777777788888
Q ss_pred HHhcCCCCCeeeCCC--cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC--------CCCCcEEE
Q 012095 373 KSFGELEGVKMSEPQ--GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF--------GDDTCIRI 442 (471)
Q Consensus 373 ~~L~~~~g~~~~~p~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f--------~~~~~iRi 442 (471)
+.+++++.+....|. ++. +.+.++.. ++.++...| ++.||.+..|+.+ +.++++|+
T Consensus 314 ~~l~~~~~~~~~~~~~r~~i-vsf~~~~~------------~~~~~~~~L-~~~gI~v~~G~~c~~~~~~~~~~~g~iRi 379 (405)
T d1jf9a_ 314 SQLESVPDLTLYGPQNRLGV-IAFNLGKH------------HAYDVGSFL-DNYGIAVRTGHHCAMPLMAYYNVPAMCRA 379 (405)
T ss_dssp HHHTTSTTEEEESCTTCCSE-EEEEETTC------------CHHHHHHHH-HHTTEECEEECTTCHHHHHHTTCSCEEEE
T ss_pred hhhhcCCcccccCCcCcCcE-EEEEcCCC------------CHHHHHHHH-HHCCcEEEccchhhhhHHHhcCCCCEEEE
Confidence 899888666665543 344 44567643 677777765 5569999988754 34678999
Q ss_pred Eeec--CHHHHHHHHHHHHHHHHhh
Q 012095 443 SYAA--SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 443 s~~~--~~e~i~~~~~~l~~~l~~~ 465 (471)
|++. +.+||+.+++.|+++++-+
T Consensus 380 S~~~ynt~eDid~l~~~l~~i~r~~ 404 (405)
T d1jf9a_ 380 SLAMYNTHEEVDRLVTGLQRIHRLL 404 (405)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9997 8899999999999987644
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.91 E-value=9.7e-22 Score=196.26 Aligned_cols=336 Identities=17% Similarity=0.198 Sum_probs=241.0
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCC-H------HHHHHHHHHHHHHhCCCCCCCcEEEeCChHH
Q 012095 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGT-L------ELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (471)
Q Consensus 94 g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~-~------~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~ 166 (471)
++++|.|..+.-. +.|+.+.+++.+.+.+...+ +..+. . ++.+...+.+++..|.+ .++.+++++++++
T Consensus 20 ~~~~iYld~a~~~-~~p~~v~~~~~~~~~~~~~n--~~s~~~~~~~~~~~~~e~aR~~ia~llga~-~~~~i~~~~~tt~ 95 (408)
T d1t3ia_ 20 GHPLVYLDNAATS-QKPRAVLEKLMHYYENDNAN--VHRGAHQLSVRATDAYEAVRNKVAKFINAR-SPREIVYTRNATE 95 (408)
T ss_dssp TEECEECBTTTCC-CCCHHHHHHHHHHHHHTCCC--C--CCSHHHHHHHHHHHHHHHHHHHHTTCS-CGGGEEEESSHHH
T ss_pred CCCeEEeeCcccc-CCCHHHHHHHHHHHHhcCCC--CCchhhHHHHHHHHHHHHHHHHHHHHhCCC-CcccEEeecchHH
Confidence 4567899877765 36888899998887763322 21111 1 23333344444445632 3578999999999
Q ss_pred HHHHHHHH----hcCCCCeEEEcCCCCCChHH----HHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCC
Q 012095 167 SILQAVLA----VCSPGDEVIIPAPFWVSYPE----MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 238 (471)
Q Consensus 167 al~~~~~~----l~~~gd~Vlv~~p~y~~~~~----~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~ 238 (471)
++..++.. -.++||+|++.+-.|++... .++..|.+++.+|.+.+ ...+.+.+++++++++++|+++..+
T Consensus 96 ~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~--~~~~~~~l~~~~~~~t~lv~i~~~~ 173 (408)
T d1t3ia_ 96 AINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQ--ESFDLEHFKTLLSEKTKLVTVVHIS 173 (408)
T ss_dssp HHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTT--SSBCHHHHHHHCCTTEEEEEEESBC
T ss_pred HHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeecccc--ccccHHHhhhccCCCceEEEEeccc
Confidence 99887765 35789999999988886543 45667999999998653 4479999999999999999999999
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCH
Q 012095 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 318 (471)
Q Consensus 239 NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~ 318 (471)
|-||..++ +++|.++|+++ ++++++|.++.. |.....+..+ +..+++.|..|.+|-+| +|+++.++
T Consensus 174 ~~tG~~~p---~~~i~~~~~~~-g~~~ivDa~q~~----g~~~id~~~~----~~D~~~~s~hK~~gp~G--~g~l~v~~ 239 (408)
T d1t3ia_ 174 NTLGCVNP---AEEIAQLAHQA-GAKVLVDACQSA----PHYPLDVQLI----DCDWLVASGHKMCAPTG--IGFLYGKE 239 (408)
T ss_dssp TTTCBBCC---HHHHHHHHHHT-TCEEEEECTTTT----TTSCCCHHHH----TCSEEEEEGGGTTSCTT--CEEEEECH
T ss_pred ccccccCc---HHHHhhhhhcc-Cceeeeccceec----cccccccccc----CCceEEeccccccCCCC--ccccccch
Confidence 99999999 88899999999 999999999875 3222333322 33488999999876444 89999998
Q ss_pred HHHHHHHHH---------------------HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC
Q 012095 319 HFVAACNKI---------------------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377 (471)
Q Consensus 319 ~~i~~l~~~---------------------~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 377 (471)
+....+... .+....+++.....++..+++.. .+...+++.++..+..+++.+.+.+
T Consensus 240 ~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~--~~~g~~~i~~~~~~l~~~l~~~~~~ 317 (408)
T d1t3ia_ 240 EILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYL--TDLGMENIHNYEVELTHYLWQGLGQ 317 (408)
T ss_dssp HHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHH--HHcCHHHHHHHHHHHHhHHhhhhcc
Confidence 887654211 01112345666666666666531 1223566777777888889999999
Q ss_pred CCCCeeeCCC------cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC--------CCCCcEEEE
Q 012095 378 LEGVKMSEPQ------GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF--------GDDTCIRIS 443 (471)
Q Consensus 378 ~~g~~~~~p~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f--------~~~~~iRis 443 (471)
.+++.+..+. ++. +.+.++.. +..++...| +++||.+..|+.+ +.++.+|||
T Consensus 318 ~~~~~~~~~~~~~~~~~~i-v~f~~~~~------------~~~~v~~~L-~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS 383 (408)
T d1t3ia_ 318 IPQLRLYGPNPKHGDRAAL-ASFNVAGL------------HASDVATMV-DQDGIAIRSGHHCTQPLHRLFDASGSARAS 383 (408)
T ss_dssp CTTEEEESCCGGGSCBCSE-EEEEETTB------------CHHHHHHHH-HTTTEECBCSCTTCHHHHHHTTCCCCEEEE
T ss_pred CccccccCCCccccCcceE-EEEEeCCC------------CHHHHHHHH-hhCCcEEecCcccccHHHHhhcCCccEEEE
Confidence 8887765432 233 55566643 677888776 5669999988765 345789999
Q ss_pred eec--CHHHHHHHHHHHHHHHHhh
Q 012095 444 YAA--SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 444 ~~~--~~e~i~~~~~~l~~~l~~~ 465 (471)
++. +++|++++++.|+++++.+
T Consensus 384 ~~~ynt~~did~li~~L~~~~~~f 407 (408)
T d1t3ia_ 384 LYFYNTKEEIDLFLQSLQATIRFF 407 (408)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHh
Confidence 997 8999999999999998765
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.90 E-value=3e-22 Score=193.35 Aligned_cols=331 Identities=10% Similarity=0.080 Sum_probs=214.8
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHH
Q 012095 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (471)
Q Consensus 95 ~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~ 174 (471)
++.++|++.+ ..+.+|++++|+.++.......|++++...++|+.+++++ | .+..+++|+|+++++..++..
T Consensus 2 ~~~~~f~s~n-~~g~~P~v~~A~~~a~~~~~~~~~~~~~~~~l~~~la~~~----g---~~~~v~f~~sGt~An~~a~~~ 73 (345)
T d1v72a1 2 PPALGFSSDN-IAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIF----E---RDVEVFLVPTGTAANALCLSA 73 (345)
T ss_dssp CCCCBCSCGG-GCCCCHHHHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHH----T---SCCEEEEESCHHHHHHHHHHT
T ss_pred CCCcCcCCCC-CCCCCHHHHHHHHHHhccCccccCCCHHHHHHHHHHHHHH----C---CCcEEEECCchHHHHHHHHHH
Confidence 4678888644 4456788999998875444566766666667777777765 5 345799999999999999999
Q ss_pred hcCCCCeEEEcCCCCCChH---HHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccC------Cc-EEEEcCCCCCcccC
Q 012095 175 VCSPGDEVIIPAPFWVSYP---EMARIADATPVILPTRISENFLLDPKVLESKLTEK------SR-LLILCSPSNPTGSV 244 (471)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~---~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~------~~-~i~i~~p~NPtG~~ 244 (471)
++.+++.+++....+.+.. ......+..+..++.. .+...+++.+++.+.+. +. .++.+++.|++|..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (345)
T d1v72a1 74 MTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDG--PAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSI 151 (345)
T ss_dssp SCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCC--GGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCC
T ss_pred HHhcCCccccccccceeeechhhHHHhcCccccccccc--ccccccHHHhhhhhcccccccccccceeeeeecccccccc
Confidence 9999988887766544332 3445566766666543 34458999999988653 33 34457788899999
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHH
Q 012095 245 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC 324 (471)
Q Consensus 245 ~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l 324 (471)
.+.++++++.++|++| ++++++|+++....+.... ..+.......+......+..|..++.+ + +.+..........
T Consensus 152 ~~~~~~~~i~~~~~~~-~~~~~~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~ 227 (345)
T d1v72a1 152 YTLDEIEAIGDVCKSS-SLGLHMDGSRFANALVSLG-CSPAEMTWKAGVDALSFGATKNGVLAA-E-AIVLFNTSLATEM 227 (345)
T ss_dssp CCHHHHHHHHHHHHHT-TCEEEEEETTHHHHHHHHT-CCTTTTTGGGTCCEEEECCGGGTCSSC-E-EEEESSGGGHHHH
T ss_pred ccchhhhhHHHHHHhc-Cceeeecccccceeccccc-cCHHHhhccccccccccCccccccccc-c-ccccchhhhhhhc
Confidence 9999999999999999 9999999999864432211 111111111122233434444332122 2 2223333333332
Q ss_pred HHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcc
Q 012095 325 NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEA 404 (471)
Q Consensus 325 ~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~ 404 (471)
.........+.+.....++...... ......+......++...+.+.+.+++|+.+..|.++++++++++
T Consensus 228 ~~~~~~~~~~~~~~~~aa~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~~niv~~~~~------- 297 (345)
T d1v72a1 228 SYRRKRAGHLSSKMRFLSAQIDAYL---TDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD------- 297 (345)
T ss_dssp HHHHHHTTCCCSSTHHHHHHHHHHT---STTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC-------
T ss_pred cccccccccccchhhHHhhhhHHHH---HHhhhhhhccchhhHHHHHHHHHHhcCCcEeccCCCccEEEEEcC-------
Confidence 2222222322333333333322222 233445555666677778888999999999888877777888875
Q ss_pred cCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHH
Q 012095 405 EGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKG 461 (471)
Q Consensus 405 ~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~ 461 (471)
.++++.|+++ ||.+.++. ..++.+||+++. |+|+|+++++.|+++
T Consensus 298 ---------~~~~~~L~~~-gi~v~~~~--~~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 298 ---------SAMIDALLKA-GFGFYHDR--WGPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp ---------HHHHHHHHHT-TCBCBCSS--SSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred ---------HHHHHHHHHc-CCCccccC--CCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2467788876 88775532 236799999875 899999999999864
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=3.1e-21 Score=190.42 Aligned_cols=327 Identities=17% Similarity=0.165 Sum_probs=205.2
Q ss_pred EEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCC----------CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHH
Q 012095 98 IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAG----------TLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (471)
Q Consensus 98 i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G----------~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~a 167 (471)
|.|..+-- -++|+.+.+++.+.+.+...+ |... ..+.|+.++++ +| .++++|++++|+|++
T Consensus 3 iyld~a~~-~~~p~~v~ea~~~~~~~~~~n--p~~~~~~~~~~~~~~~~aR~~ia~l----~~--~~~~~i~~~~~~T~~ 73 (376)
T d1eg5a_ 3 VYFDNNAT-TRVDDRVLEEMIVFYREKYGN--PNSAHGMGIEANLHMEKAREKVAKV----LG--VSPSEIFFTSCATES 73 (376)
T ss_dssp EECBTTTC-CCCCHHHHHHHHHHHHTCCCC--TTCSSHHHHHHHHHHHHHHHHHHHH----HT--SCGGGEEEESCHHHH
T ss_pred EEEECccc-ccCCHHHHHHHHHHHHHcCCC--CccccHHHHHHHHHHHHHHHHHHHH----cC--CCCCcEEEECCHHHH
Confidence 44444332 235788999999888753221 2111 12334555555 45 578999999999999
Q ss_pred HHHHHHH----hcCCCCeEEEcCCCCCChHHHH---HHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCC
Q 012095 168 ILQAVLA----VCSPGDEVIIPAPFWVSYPEMA---RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNP 240 (471)
Q Consensus 168 l~~~~~~----l~~~gd~Vlv~~p~y~~~~~~~---~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NP 240 (471)
+..++.. ...+|+.|++....|+.+.... +..|++++.+|++. ++.+|+++++++++++|+++++++++|+
T Consensus 74 l~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~--~~~id~~~l~~~i~~~t~lv~is~v~~~ 151 (376)
T d1eg5a_ 74 INWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS--RGVVKLEELEKLVDEDTFLVSIMAANNE 151 (376)
T ss_dssp HHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCT--TSCBCHHHHHHHCCTTEEEEEEESBCTT
T ss_pred HHhhhhcccccccccCcccccccccchhhHHHHHHHHhcCCEEEEEcCCC--CCeECHHHHHHhcCCCceEEEEECCccc
Confidence 9988764 3567889999888888776544 55699999999875 4569999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHH
Q 012095 241 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 320 (471)
Q Consensus 241 tG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~ 320 (471)
||..++.+++.++++. +.. ++++++|.++.. +.....+.. .+..+++.|++|.+|.+|..++|+.-...+
T Consensus 152 tG~~~~~~~i~~~~~~-~~~-~~~~~vD~~q~~----g~~~~d~~~----~~~D~~~~s~~K~~gp~G~~~l~~~~~~~~ 221 (376)
T d1eg5a_ 152 VGTIQPVEDVTRIVKK-KNK-ETLVHVDAVQTI----GKIPFSLEK----LEVDYASFSAHKFHGPKGVGITYIRKGVPI 221 (376)
T ss_dssp TCBBCCHHHHHHHHHH-HCT-TCEEEEECTTTT----TTSCCCCTT----TCCSEEEEEGGGGTSCTTCEEEEECTTSCC
T ss_pred cceeeeehhhhhhhhh-ccc-CceeEEEeeecc----ccccccccc----cCccceecccceeecCCCceeEEeccCccc
Confidence 9999994444443332 334 789999999875 222222222 345589999999998888666554322110
Q ss_pred HHHHH---HHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC----cceEEe
Q 012095 321 VAACN---KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAFYLF 393 (471)
Q Consensus 321 i~~l~---~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~----~g~~~~ 393 (471)
...+. ..........+......+...... .................++.+.|... +.....+. ... +.
T Consensus 222 ~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~-~~ 296 (376)
T d1eg5a_ 222 RPLIHGGGQERGLRSGTQNVPGIVGAARAMEI---AVEELSEAAKHMEKLRSKLVSGLMNL-GAHIITPLEISLPNT-LS 296 (376)
T ss_dssp CCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHH---HHHTHHHHHHHHHHHHHHHHHHHHTT-TCEECSCTTSBCTTE-EE
T ss_pred CCcccCCCCcccccCCcccchhhhhHHHHhhc---cccchhhhhhhhhhhhhhhccccccc-cccccccccccccce-ee
Confidence 00000 001111222344444444444332 12223444455556667777777765 22222221 122 33
Q ss_pred EecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------------------CCcEEEEeec--CHHHHH
Q 012095 394 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------------------DTCIRISYAA--SLTTLQ 452 (471)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~-------------------~~~iRis~~~--~~e~i~ 452 (471)
..++.. +...+...| +++||.++.|..+.. .++||+|++. |++||+
T Consensus 297 ~~~~~~------------~~~~~~~~L-~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid 363 (376)
T d1eg5a_ 297 VSFPNI------------RGSTLQNLL-SGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVD 363 (376)
T ss_dssp EECTTC------------CHHHHHHHH-HHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHH
T ss_pred eccCCC------------CHHHHHHHH-hhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHH
Confidence 344432 567777754 556999988865421 1369999986 899999
Q ss_pred HHHHHHHHHHH
Q 012095 453 AAVERIKKGLL 463 (471)
Q Consensus 453 ~~~~~l~~~l~ 463 (471)
++++.|++++.
T Consensus 364 ~l~~~L~~iv~ 374 (376)
T d1eg5a_ 364 YFLKKIEEILS 374 (376)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999875
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.88 E-value=1.4e-22 Score=193.92 Aligned_cols=325 Identities=15% Similarity=0.097 Sum_probs=202.2
Q ss_pred EcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCC
Q 012095 99 RLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSP 178 (471)
Q Consensus 99 ~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~ 178 (471)
+| .|++..+++|.+++|+.++......+|++..+..++|+.+++++ | ..+++|++|+|+++++..++..++.+
T Consensus 3 ~f-~nd~~~g~~P~v~eAl~~~~~~~~~~y~~~~~~~~lr~~ia~~~----g--~~~~~v~~tsggtean~~a~~~~~~~ 75 (340)
T d1svva_ 3 SF-VNDYSVGMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELL----E--RPDADVHFISGGTQTNLIACSLALRP 75 (340)
T ss_dssp EC-SCSCSSCCCHHHHHHHHHHTTCCCCSTTCSHHHHHHHHHHHHHH----T--CTTSEEEEESCHHHHHHHHHHHHCCT
T ss_pred Cc-ccCCCCCCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHh----C--CCcceEEEcCCHHHHHHHHHHHHhhh
Confidence 44 35666777889999999887665677887777788888888876 4 35679999999999999999999999
Q ss_pred CCeEEEcCCCCCChHHH--HHHcCCEEEEecCCCCCCCcCCHHHHHhhhcc------CCcEEEEcCCCCCcccCCCHHHH
Q 012095 179 GDEVIIPAPFWVSYPEM--ARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLL 250 (471)
Q Consensus 179 gd~Vlv~~p~y~~~~~~--~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~------~~~~i~i~~p~NPtG~~~~~~~l 250 (471)
++.+++..+.+..+... ....+.....+.... . ..+.+....+... .+..++++.+.|.+|.+...+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (340)
T d1svva_ 76 WEAVIATQLGHISTHETGAIEATGHKVVTAPCPD--G-KLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQEL 152 (340)
T ss_dssp TEEEEEETTSHHHHSSTTHHHHTTCCEEEECCTT--S-CCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHH
T ss_pred ccccccccccceeeeecccccccceeeeeccccc--c-cccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHh
Confidence 99999988877655432 223333333333321 1 2344433333211 22344455555567788888999
Q ss_pred HHHHHHHHhCCCeEEEEccCCCccccCCCCc-cccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHh
Q 012095 251 DEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS 329 (471)
Q Consensus 251 ~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~ 329 (471)
..+.+.|+++ +.+++.|++|.......... ....... ....+...+..|.. .+.+.++................
T Consensus 153 ~~~~~~~~~~-g~~~~~d~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 227 (340)
T d1svva_ 153 EDISASCKEH-GLYLFLDGARLASALSSPVNDLTLADIA--RLTDMFYIGATKAG--GMFGEALIILNDALKPNARHLIK 227 (340)
T ss_dssp HHHHHHHHHH-TCEEEEECTTHHHHHTSTTCCCCHHHHH--HHCSEEEEECTTTT--CSSCEEEEECSGGGCTTHHHHHH
T ss_pred hhhhcccccc-cceeeeeccceeeeeccccccccccccc--ccceeeecCCcccc--ccccccccccchhhhhhhhhhcc
Confidence 9999999999 99999999997543322111 1111111 12234444444544 44445565555544443332222
Q ss_pred cccC-CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCCcccCCC
Q 012095 330 QFTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFG 408 (471)
Q Consensus 330 ~~~~-~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~ 408 (471)
.... ........++...+.. ........+...++++++...|+.+ |+++..|..+.++++++++
T Consensus 228 ~~~~~~~~~~~~~aa~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~p~~~~~v~~~~~~---------- 292 (340)
T d1svva_ 228 QRGALMAKGWLLGIQFEVLMK----DNLFFELGAHSNKMAAILKAGLEAC-GIRLAWPSASNQLFPILEN---------- 292 (340)
T ss_dssp HTTCCCTTTHHHHHHHHHHTS----TTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCCSSSEECBEEEH----------
T ss_pred cccCccchhhHHHHHHHHHhh----hhHHHHHHHHHHHHHhhhHHHHhcC-CCeeecCCCceEEEEeCCH----------
Confidence 2222 2222222222222221 2334445667778888888888887 8888777777778887752
Q ss_pred CCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHH
Q 012095 409 KIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKK 460 (471)
Q Consensus 409 ~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~ 460 (471)
+..+.|+++..+...+... ..++++|++++. |+++|++++++|++
T Consensus 293 ------~~~~~l~~~~~~~~~~~~~-~~~~~vR~s~~~~~t~edid~~l~~l~~ 339 (340)
T d1svva_ 293 ------TMIAELNNDFDMYTVEPLK-DGTCIMRLCTSWATEEKECHRFVEVLKR 339 (340)
T ss_dssp ------HHHHHHTTTEECEEEEEET-TTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHhhhhhcccccC-CCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4556666653323333222 235789998764 99999999999876
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=3.5e-21 Score=190.73 Aligned_cols=335 Identities=16% Similarity=0.163 Sum_probs=228.9
Q ss_pred EEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcC
Q 012095 98 IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS 177 (471)
Q Consensus 98 i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~ 177 (471)
+-|+-| +.+.|+.|++++... ...+. .....++.+.+.+.+++.+|.+ ++..|+++.|+|++++.++..++.
T Consensus 21 ~l~~pG--P~~~~~~Vl~am~~~---~i~HR--s~~f~~i~~ea~~~l~~llg~~-~~~~ii~~gsgT~a~~~~i~~l~~ 92 (388)
T d1h0ca_ 21 LLLGPG--PSNLPPRIMAAGGLQ---MIGSM--SKDMYQIMDEIKEGIQYVFQTR-NPLTLVISGSGHCALEAALVNVLE 92 (388)
T ss_dssp EECSSS--CCCCCHHHHHHHTCC---CCCTT--SHHHHHHHHHHHHHHHHHHTCC-CSEEEEESSCHHHHHHHHHHHHCC
T ss_pred ccccCC--CCCCCHHHHHHhCcC---CCCCC--CHHHHHHHHHHHHHHHHHhCCC-CCcEEEEcCcHHHHHHHHHHHhhc
Confidence 334444 223477887776421 12222 2233555666666777777753 334689999999999999999999
Q ss_pred CCCeEEEcCCCCCChH--HHHHHcCCEEEEecCCCCCCCcCCHHHHHhhh-ccCCcEEEEcCCCCCcccCCCHHHHHHHH
Q 012095 178 PGDEVIIPAPFWVSYP--EMARIADATPVILPTRISENFLLDPKVLESKL-TEKSRLLILCSPSNPTGSVYPKNLLDEIA 254 (471)
Q Consensus 178 ~gd~Vlv~~p~y~~~~--~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l-~~~~~~i~i~~p~NPtG~~~~~~~l~~i~ 254 (471)
+||.+++....+.+.. ..+...+..++.+..+. +..+|.+.+++.+ +.+++++++++.+|.||...+ +++|.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~p---i~~i~ 167 (388)
T d1h0ca_ 93 PGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDP--GGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQP---LDGFG 167 (388)
T ss_dssp SSCCEEECBSSHHHHHHHHHHHHHC--CBCCBCCT--TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHH
T ss_pred cCCceeeecccceeeeeccccccccccccccccCC--ccccchHHHHHHhccCCcceEEEeeeeeccccccC---HHHHH
Confidence 9999998887766544 34566777776666553 3457888887766 458999999999999999999 99999
Q ss_pred HHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHH------
Q 012095 255 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ------ 328 (471)
Q Consensus 255 ~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~------ 328 (471)
++|++| ++++++|.++... .....+.. .+..+++.|..|.++.++ -+|+++.++..++.+....
T Consensus 168 ~~~~~~-g~~~~vD~~qs~g----~~~~d~~~----~~~D~~~~s~~K~~~gp~-g~~~~~~~~~~~~~~~~~~~~~~~~ 237 (388)
T d1h0ca_ 168 ELCHRY-KCLLLVDSVASLG----GTPLYMDR----QGIDILYSGSQKALNAPP-GTSLISFSDKAKKKMYSRKTKPFSF 237 (388)
T ss_dssp HHHHTT-TCEEEEECTTTTT----TSCCCTTT----TTCSEEEEESSSTTCCCT-TCEEEEECHHHHHHHTTCSSCCSCS
T ss_pred HHhhcc-cccceeccccccc----cccccccc----cccceecccccccccCCC-ceEEEeecHHHHHhhhhcccccccc
Confidence 999999 9999999998752 21122221 344588888999985333 4678888888777653210
Q ss_pred -----------------hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC----
Q 012095 329 -----------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ---- 387 (471)
Q Consensus 329 -----------------~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~---- 387 (471)
......++.....+..+++... .+..++.+.++.++..+++++.+... |.....++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~--~~~g~~~~~~~~~~l~~~l~~~~~~~-g~~~~~~~~~~r 314 (388)
T d1h0ca_ 238 YLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALI--AEQGLENSWRQHREAAAYLHGRLQAL-GLQLFVKDPALR 314 (388)
T ss_dssp TTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGB
T ss_pred ccccchhhhhhhhccccccccccccHHHHHHHHHHHHHH--HHhccccccccccchhHHHHHHHhhc-CcccccCCHHHc
Confidence 1112235555555555555431 12236677777788888888888776 44333222
Q ss_pred cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEE-eec--CHHHHHHHHHHHHHHHHh
Q 012095 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS-YAA--SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 388 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis-~~~--~~e~i~~~~~~l~~~l~~ 464 (471)
....+.+.+|+.. +..++...|++++||.+..|......+.|||| ++. +.|+++++++.|++++++
T Consensus 315 s~~i~~~~~p~~~-----------~~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~aL~~~L~~ 383 (388)
T d1h0ca_ 315 LPTVTTVAVPAGY-----------DWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQH 383 (388)
T ss_dssp CTTEEEEECCTTC-----------CHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCC-----------CHHHHHHHHHhcCCEEEeCCchhhcCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 2223566776542 78899999999889999998765566789999 653 789999999999999999
Q ss_pred hCCCC
Q 012095 465 LRPGV 469 (471)
Q Consensus 465 ~~~~~ 469 (471)
++.++
T Consensus 384 l~k~~ 388 (388)
T d1h0ca_ 384 CPKKK 388 (388)
T ss_dssp SCCC-
T ss_pred hcccC
Confidence 98653
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.85 E-value=2.8e-18 Score=167.27 Aligned_cols=224 Identities=13% Similarity=0.199 Sum_probs=168.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH----HHHcCC
Q 012095 126 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADA 201 (471)
Q Consensus 126 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~G~ 201 (471)
..|+- .|. .-++.+++.+....| .+..++++++..|+..++.+++++||.|++++..|...... +...|.
T Consensus 55 ~~Y~R-~~n-PT~~~LE~~la~LEg----g~~a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi 128 (397)
T d1y4ia1 55 YIYTR-LGN-PTTDALEKKLAVLER----GEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGI 128 (397)
T ss_dssp SCCCT-TSC-HHHHHHHHHHHHHHT----CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTC
T ss_pred ceeeC-CCC-HHHHHHHHHHHHHhC----CccceeehHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCce
Confidence 44643 233 234444444444433 35678889999999999999999999999999999876654 456799
Q ss_pred EEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCc
Q 012095 202 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 281 (471)
Q Consensus 202 ~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~ 281 (471)
++..++. -|++.+++++++++|+||+.+|.|||..+.+ +++|+++|+++ ++++++|..+..- ...
T Consensus 129 ~~~~vd~-------~d~~~~~~~i~~~Tklv~~Esp~NP~l~v~D---i~~i~~iA~~~-gi~~vvDnT~atP----~~~ 193 (397)
T d1y4ia1 129 NVRFVDA-------GKPEEIRAAMRPETKVVYIETPANPTLSLVD---IETVAGIAHQQ-GALLVVDNTFMSP----YCQ 193 (397)
T ss_dssp EEEEECT-------TSHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTCT----TTC
T ss_pred EeeccCC-------CCHHHHHHhcCCCCcEEEecCCcccceeecc---cHHHHHHhhcC-CceEEecCcccCc----ccC
Confidence 9998864 2889999999999999999999999999999 99999999999 9999999998641 111
Q ss_pred cccccCCCCCCceEEEecCCcccC-ccchhheeeEcCHHHHHHHH--HHHhcccCCCChHHHHHHHHHHhccCCChHHHH
Q 012095 282 TSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACN--KIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 358 (471)
Q Consensus 282 ~~~~~~~~~~~~~i~~~S~SK~~g-~~G~R~G~v~~~~~~i~~l~--~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~ 358 (471)
.+ .. .+-.|++.|.+|.++ -...=.|.++++++.+.+.+ ..+.....++++...+.+..-|+. +.
T Consensus 194 ~P-l~----~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~T-------L~ 261 (397)
T d1y4ia1 194 QP-LQ----LGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKT-------LG 261 (397)
T ss_dssp CG-GG----GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTT-------HH
T ss_pred cc-hh----cCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcCc-------HH
Confidence 11 11 244599999999994 23344577888988877643 445556778888887777766654 55
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCe
Q 012095 359 KMVKAFRERRDFLVKSFGELEGVK 382 (471)
Q Consensus 359 ~~~~~~~~~r~~l~~~L~~~~g~~ 382 (471)
-+.++..++...+.+.|++.|.++
T Consensus 262 lRm~~~~~nA~~lA~~L~~hp~V~ 285 (397)
T d1y4ia1 262 IRMERHCENALKIARFLEGHPSIT 285 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcC
Confidence 566667788888889999887664
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.85 E-value=6.8e-19 Score=171.54 Aligned_cols=214 Identities=16% Similarity=0.170 Sum_probs=168.0
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEecCC
Q 012095 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTR 209 (471)
Q Consensus 134 ~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~G~~~~~v~~~ 209 (471)
...|.+.|++.. ..+..++++++..|+..++.+++++||.|++++..|.+....+ +..|.++.+++.
T Consensus 61 ~~~LE~~la~LE--------g~~~a~~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~- 131 (392)
T d1gc0a_ 61 LNLLEARMASLE--------GGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDM- 131 (392)
T ss_dssp HHHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECT-
T ss_pred HHHHHHHHHHHh--------CCcceeehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCCcccccCCc-
Confidence 445666666653 3467888999999999999999999999999999999887665 456999988864
Q ss_pred CCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCC
Q 012095 210 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289 (471)
Q Consensus 210 ~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 289 (471)
-|++.+++++++++|+|++.+|.|||..+.+ +++|+++|+++ ++++++|..|.--.+ .-+-
T Consensus 132 ------~d~~~~~~ai~~~t~lv~~Esp~NP~l~v~D---i~~i~~ia~~~-g~~~vvDnT~atP~~---------~~Pl 192 (392)
T d1gc0a_ 132 ------ADLQALEAAMTPATRVIYFESPANPNMHMAD---IAGVAKIARKH-GATVVVDNTYCTPYL---------QRPL 192 (392)
T ss_dssp ------TCHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHGGG-TCEEEEECTTTHHHH---------CCGG
T ss_pred ------cCHHHHHHhCCCCCeEEEecccccceeeecc---hHHHHHHHHhc-CCEEEEecCccCccc---------cChH
Confidence 3899999999999999999999999999999 99999999999 999999999973111 1111
Q ss_pred CCCceEEEecCCcccC-ccchhheeeEcCHHHHHHHH--HHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 012095 290 MWERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACN--KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366 (471)
Q Consensus 290 ~~~~~i~~~S~SK~~g-~~G~R~G~v~~~~~~i~~l~--~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~ 366 (471)
..+-.|++.|.+|.++ -...-.|.++++++.+.+++ ..+.....++++.....+..-|+. +..+.++..+
T Consensus 193 ~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~T-------L~lRm~~~~~ 265 (392)
T d1gc0a_ 193 ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKT-------LNLRMDRHCA 265 (392)
T ss_dssp GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTT-------HHHHHHHHHH
T ss_pred HhCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccCCcCChhhHHHHHhcccc-------HHHHHHHHHH
Confidence 1344599999999994 33355688889998887654 445556777888887777766654 5566666777
Q ss_pred HHHHHHHHhcCCCCCe
Q 012095 367 RRDFLVKSFGELEGVK 382 (471)
Q Consensus 367 ~r~~l~~~L~~~~g~~ 382 (471)
+...+.+.|++.|.++
T Consensus 266 nA~~lA~~L~~hp~V~ 281 (392)
T d1gc0a_ 266 NAQVLAEFLARQPQVE 281 (392)
T ss_dssp HHHHHHHHHHTCTTEE
T ss_pred HHHHHHHHHHhCCCcc
Confidence 8888888888876654
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.84 E-value=1e-20 Score=192.12 Aligned_cols=328 Identities=13% Similarity=0.087 Sum_probs=205.4
Q ss_pred HHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCe-------EEEcCCCCCCh
Q 012095 120 AIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDE-------VIIPAPFWVSY 192 (471)
Q Consensus 120 ~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~-------Vlv~~p~y~~~ 192 (471)
++..+...|+.+++..+|++.+++++ | .+++++++++++|...++++++++||. ++...+.|.++
T Consensus 63 ~~~~gd~~y~~~~~~~~le~~~a~l~----g----~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~ 134 (465)
T d1ax4a_ 63 AMITGDEAYAGSRNYYDLKDKAKELF----N----YDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTT 134 (465)
T ss_dssp HHHTCCCCSSSCHHHHHHHHHHHHHH----C----CCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHH
T ss_pred HHhhhhhhhccChHHHHHHHHHHHHH----C----CCEEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhh
Confidence 34456778998888899999999886 3 468999999999999999998765543 45555556666
Q ss_pred HHHHHHcCCEEEEecCC--------CCCCCcCCHHHHHhhhcc----CCcEEEEcCCCCCc-ccCCCHHHHHHHHHHHHh
Q 012095 193 PEMARIADATPVILPTR--------ISENFLLDPKVLESKLTE----KSRLLILCSPSNPT-GSVYPKNLLDEIARIVAK 259 (471)
Q Consensus 193 ~~~~~~~G~~~~~v~~~--------~~~~~~ld~e~l~~~l~~----~~~~i~i~~p~NPt-G~~~~~~~l~~i~~l~~~ 259 (471)
...+...|+.++.+... ....+.+|++++++++++ .+.++++..++|.. |.+++.+++++|.++|++
T Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~ 214 (465)
T d1ax4a_ 135 AAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQ 214 (465)
T ss_dssp HHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHH
Confidence 67788899998877542 123467899999999864 23345555566655 467899999999999999
Q ss_pred CCCeEEEEccCCCccccC-------CCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHH--HHHHHHHHH-h
Q 012095 260 HPRLLVLSDEIYEHIIYA-------PATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH--FVAACNKIQ-S 329 (471)
Q Consensus 260 ~~~~~ii~De~y~~~~~~-------~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~--~i~~l~~~~-~ 329 (471)
| |+++|+|+++...... +...........+.....-+.||||..++.|++.|+++++++ +........ .
T Consensus 215 ~-g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~~g~l~~~~~~~~~~~~~~~~~~ 293 (465)
T d1ax4a_ 215 H-GIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVP 293 (465)
T ss_dssp H-TCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSCEEEEESSCHHHHHHHHHHHHH
T ss_pred c-CCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccCcccccceeEeecchHHHHHhhhccccc
Confidence 9 9999999998642210 000001110000000011133444444457788899987643 233322211 1
Q ss_pred ---cc-cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEecCCccCC-cc
Q 012095 330 ---QF-TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGS-EA 404 (471)
Q Consensus 330 ---~~-~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~~~~~~~~-~~ 404 (471)
.. ..+.......++...+.+. ..+...++..++.+++.+.|.++ |+.+..+.++++++++....... ..
T Consensus 294 ~~~~~~~~~~~~~~~~a~~~~~~e~-----~~~~~~~~~~~~~~~l~~~L~~~-g~~~v~~~~~~~~~~~~~~~~~~~~~ 367 (465)
T d1ax4a_ 294 MEGFVTYGGLAGRDMAAMVQGLEEG-----TEEEYLHYRIGQVKYLGDRLREA-GIPIQYPTGGHAVFVDCKKLVPQIPG 367 (465)
T ss_dssp HTCSTTTTTCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSSEEEEESTTTCTTSCG
T ss_pred cccCCCcchhhHHHHHHHhhhhHHh-----hhHHHHHHHHHHHHHHHHHHHhh-cCccccCCCcceeeeehhhhcCCCcc
Confidence 11 1122333333333333321 11233444556677888888887 78888888888888776433211 11
Q ss_pred cCCCCCCCHHHHHHHHHHcCCEEEECCCC-------------CCCCCcEEEEeec---CHHHHHHHHHHHHHHHHhhC
Q 012095 405 EGFGKIENSESLCRYLLDKAQVALVPGDA-------------FGDDTCIRISYAA---SLTTLQAAVERIKKGLLTLR 466 (471)
Q Consensus 405 ~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~-------------f~~~~~iRis~~~---~~e~i~~~~~~l~~~l~~~~ 466 (471)
.++ ....+...++.+.||....... +...+.+|+++.. |+|+++.+++.|.+++++..
T Consensus 368 ~~~----~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~~~ 441 (465)
T d1ax4a_ 368 DQF----PAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFA 441 (465)
T ss_dssp GGC----HHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred ccc----hhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 111 3455666677777987654221 1123579998753 89999999999999887644
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.83 E-value=2e-18 Score=169.89 Aligned_cols=308 Identities=16% Similarity=0.191 Sum_probs=207.6
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCC
Q 012095 110 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPF 188 (471)
Q Consensus 110 p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~ 188 (471)
.++-++++.+++..+...+| +...+|++.+++++ | .++.+.++++|.|+..++.++ +++||+|+++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~G--~~v~~~E~~la~~~----g----~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~ 80 (376)
T d1mdoa_ 11 GAEELAAVKTVLDSGWITTG--PKNQELEAAFCRLT----G----NQYAVAVSSATAGMHIALMALGIGEGDEVITPSMT 80 (376)
T ss_dssp CHHHHHHHHHHHHHTCCSSS--HHHHHHHHHHHHHH----C----CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSS
T ss_pred CHHHHHHHHHHHhcCCCcCC--HHHHHHHHHHHHHH----C----cCeEEEeCCHHHHHHHHHHHhCCCCCCEEEEeccc
Confidence 35556788888887654443 34677888888886 3 357888888899999999998 8999999999999
Q ss_pred CCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEc
Q 012095 189 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 268 (471)
Q Consensus 189 y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~D 268 (471)
|.+....+..+|++++.++++++ .+.+|++.|+++++++|++|+++ |..|...+ +++|.++|++| +++||+|
T Consensus 81 ~~~~~~ai~~~g~~pv~~d~~~~-~~~~d~~~l~~~i~~~tkaIi~~---h~~G~~~~---~~~i~~i~~~~-~i~vIeD 152 (376)
T d1mdoa_ 81 WVSTLNMIVLLGANPVMVDVDRD-TLMVTPEHIEAAITPQTKAIIPV---HYAGAPAD---LDAIYALGERY-GIPVIED 152 (376)
T ss_dssp CHHHHHHHHHTTCEEEEECBCTT-TCCBCHHHHHHHCCTTEEEECCB---CGGGCCCC---HHHHHHHHHHH-TCCBCEE
T ss_pred ccccccchhccccceeeeccccc-ccCCCHHHHHHhcCCCCeEEEEe---CCCCCccc---hhHHHHHHHhc-CceEEec
Confidence 99999999999999999999864 57799999999999999999865 46788888 88899999999 9999999
Q ss_pred cCCCcccc-CCCCccccccCCCCCCceEEEecC--CcccCccchhheeeEcC-HHHHHHHHHHHhc--------------
Q 012095 269 EIYEHIIY-APATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAGP-KHFVAACNKIQSQ-------------- 330 (471)
Q Consensus 269 e~y~~~~~-~~~~~~~~~~~~~~~~~~i~~~S~--SK~~g~~G~R~G~v~~~-~~~i~~l~~~~~~-------------- 330 (471)
.+++.... .+. . .+..+ ..+.|| +|.++ +| ..|.++++ +++.++++.++..
T Consensus 153 ~a~a~g~~~~~~---~----~g~~g--~~~~Sf~~~K~l~-~g-~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~ 221 (376)
T d1mdoa_ 153 AAHATGTSYKGR---H----IGARG--TAIFSFHAIKNIT-CA-EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGR 221 (376)
T ss_dssp CTTCTTCEETTE---E----TTSSS--EEEEECCTTSSSC-SS-SCEEEEESCHHHHHHHHHHTBTTEECC---------
T ss_pred cchhccCeeCCe---e----ccccc--CccccCCCcCCCC-CC-CCCEEEEechhHHHHHHhhcccCCcccccccccccc
Confidence 99986431 111 1 11123 244566 58885 33 35777764 5566766655322
Q ss_pred ----------ccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCc----ceEEeEe-
Q 012095 331 ----------FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG----AFYLFID- 395 (471)
Q Consensus 331 ----------~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~----g~~~~~~- 395 (471)
.+..++.+..+.+..-|. .+++..++.++.++++.+.|.++++.....+.. .++.++.
T Consensus 222 ~~~~~~~~~g~n~~~~~~~Aai~~~qL~-------~~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (376)
T d1mdoa_ 222 APQAEVLAPGYKYNLPDLNAAIALAQLQ-------KLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIR 294 (376)
T ss_dssp --CCEESSCCCBCCCCHHHHHHHHHHHH-------THHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEE
T ss_pred cccccchhcccccccchhhhhhhhhhhh-------hhhHHHHHHhhhhhhhhhhcccccccccccccccccccccccccc
Confidence 122233343333333333 245556666777788888888875544432221 1112222
Q ss_pred cCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC-----------CC----------CCcEEEEeec--CHHHHH
Q 012095 396 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF-----------GD----------DTCIRISYAA--SLTTLQ 452 (471)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f-----------~~----------~~~iRis~~~--~~e~i~ 452 (471)
+.... . ..+-.++.++|.++ ||.+.+.... .. ...|.|-+.. ++++++
T Consensus 295 ~~~~~----~----~~~Rd~l~~~L~~~-gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~ 365 (376)
T d1mdoa_ 295 VDEAR----C----GITRDALMASLKTK-GIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFD 365 (376)
T ss_dssp CCHHH----H----SSCHHHHHHHHHHT-TBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHH
T ss_pred ccccc----c----hhhHHHHHHHHHHC-CCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHH
Confidence 21100 0 01345788887665 8987653211 01 1246665554 889999
Q ss_pred HHHHHHHHHH
Q 012095 453 AAVERIKKGL 462 (471)
Q Consensus 453 ~~~~~l~~~l 462 (471)
+.++.|++++
T Consensus 366 ~I~~~i~~i~ 375 (376)
T d1mdoa_ 366 RVITALHQIA 375 (376)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998875
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.83 E-value=5.4e-18 Score=167.29 Aligned_cols=312 Identities=16% Similarity=0.224 Sum_probs=212.1
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCC
Q 012095 110 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPF 188 (471)
Q Consensus 110 p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~ 188 (471)
..+-.+++.+++..+..-++...-..++.+.+++++ ....++.+++++.|+.++++++ +++||+|++|..+
T Consensus 12 ~~~~~~~~~~~l~~g~~~~~~g~~v~~fE~~~a~~~--------g~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t 83 (384)
T d1b9ha_ 12 DDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHH--------GAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFT 83 (384)
T ss_dssp CHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHT--------TCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSS
T ss_pred CHHHHHHHHHHHHcCCeeecCCHHHHHHHHHHHHHH--------CcCeEEEeCCHHHHHHHHHHHcCCCCCCEEEEeccc
Confidence 356678888888876432333334577778787775 3457889999999999999987 7899999999999
Q ss_pred CCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEc
Q 012095 189 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 268 (471)
Q Consensus 189 y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~D 268 (471)
|......+...|++++.+++++ ..+.+|++.+++.+++++++|+ +.+..|...+ +++|.++|+++ +++||+|
T Consensus 84 ~~a~~~ai~~~g~~p~~~d~~~-~~~~~d~~~~~~~i~~~tk~i~---~~~~~g~~~d---~~~i~~~~~~~-~i~lieD 155 (384)
T d1b9ha_ 84 FISSSQAAQRLGAVTVPVDVDA-ATYNLDPEAVAAAVTPRTKVIM---PVHMAGLMAD---MDALAKISADT-GVPLLQD 155 (384)
T ss_dssp CTHHHHHHHHTTCEEEEECBCT-TTCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCC---HHHHHHHHHHH-TCCBCEE
T ss_pred cccccccccccccccccccccc-cccccchhhhcccccccccccc---cccccccccc---cccchhhhhhh-hhhhhhh
Confidence 9999999999999999999875 4578999999999999999887 4566788888 88999999999 9999999
Q ss_pred cCCCcccc-CCCCccccccCCCCCCceEEEecC--CcccCccchhheeeEc-CHHHHHHHHHHHhc--------------
Q 012095 269 EIYEHIIY-APATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAG-PKHFVAACNKIQSQ-------------- 330 (471)
Q Consensus 269 e~y~~~~~-~~~~~~~~~~~~~~~~~~i~~~S~--SK~~g~~G~R~G~v~~-~~~~i~~l~~~~~~-------------- 330 (471)
.++..+.. .+.. ...+. + +.+.|| +|.++ .| .-|.+++ ++++.+.++.++..
T Consensus 156 ~a~a~ga~~~g~~---~g~~g---~--~~~~Sf~~~K~i~-~g-~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 225 (384)
T d1b9ha_ 156 AAHAHGARWQGKR---VGELD---S--IATFSFQNGKLMT-AG-EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHK 225 (384)
T ss_dssp CTTCTTCEETTEE---GGGSS---S--CEEEECCTTSSSC-SS-SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCC
T ss_pred hceecccccCCEe---cCccc---c--cceeccccccccc-cc-ccchhhhhhHHHHHHHHHHHhcCCCCcccccccccc
Confidence 99986442 2221 11111 2 445555 78875 33 4577776 46677777665432
Q ss_pred ---ccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC--C--C-c-ceEEeEecCCccC
Q 012095 331 ---FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE--P--Q-G-AFYLFIDFSTYYG 401 (471)
Q Consensus 331 ---~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~--p--~-~-g~~~~~~~~~~~~ 401 (471)
+++-++.+..+++...|+. +++..+.-+++.+++.+.|++++++.... . . . .++..+.++....
T Consensus 226 ~~G~n~rms~l~Aaig~~qL~~-------ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (384)
T d1b9ha_ 226 IAGSNMRLNEFSASVLRAQLAR-------LDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTE 298 (384)
T ss_dssp SCCCBCBCBHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCH
T ss_pred ccccccccccchhhhhhhhhhh-------cccchhhhhhhhhhhhhhhhcccccccccccccccccccccccceeccccc
Confidence 1223455544444444442 44555556677788888888887764321 1 1 1 2223334443210
Q ss_pred CcccCCCCCCCHHHHHHHHHHcCCEEEECCCC----------CCCC-------------------CcEEEEeec--C-HH
Q 012095 402 SEAEGFGKIENSESLCRYLLDKAQVALVPGDA----------FGDD-------------------TCIRISYAA--S-LT 449 (471)
Q Consensus 402 ~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~----------f~~~-------------------~~iRis~~~--~-~e 449 (471)
..-.+|.++|.++ ||-+.+... ++.. ..|.|-+.. + ++
T Consensus 299 ---------~~Rd~l~~~L~~~-GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ 368 (384)
T d1b9ha_ 299 ---------ERRNALVDRLVEA-GLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEP 368 (384)
T ss_dssp ---------HHHHHHHHHHHHT-TCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHH
T ss_pred ---------ccHHHHHHHHHHC-CCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHH
Confidence 0123688887665 998776422 1100 136666554 5 67
Q ss_pred HHHHHHHHHHHHHHh
Q 012095 450 TLQAAVERIKKGLLT 464 (471)
Q Consensus 450 ~i~~~~~~l~~~l~~ 464 (471)
+++..++.|++++.+
T Consensus 369 ei~~I~~~i~~~l~~ 383 (384)
T d1b9ha_ 369 ELHATAEIIADAVAR 383 (384)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998865
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.82 E-value=4.7e-19 Score=178.37 Aligned_cols=342 Identities=13% Similarity=0.093 Sum_probs=220.0
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhc
Q 012095 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC 176 (471)
Q Consensus 97 ~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~ 176 (471)
+|||-+.....+-. +++..+...+...|+.++...+|.+.+++++ ..+.++++++++.|+..++++++
T Consensus 44 ~iDl~sDs~t~am~----~~~~aa~~~GDd~Y~~dpt~~~lE~~~a~l~--------G~e~al~~~SGt~An~~a~~~l~ 111 (456)
T d1c7ga_ 44 YIDLLTDSGTNAMS----DKQWAGMMIGDEAYAGSENFYHLEKTVKELF--------GFKHIVPTHQGRGAENLLSQLAI 111 (456)
T ss_dssp SEECSCSSSCCCEE----HHHHHHTTSCCCCSSSCHHHHHHHHHHHHHH--------CCSEEEEESSHHHHHHHHHHHHC
T ss_pred eeEcccCCCcccch----HHHHHHHhccchhccCCchHHHHHHHHHHHh--------CCCeEEECCCHHHHHHHHHHHhc
Confidence 67776654432222 3333333456678988888889999999986 34678999999999999999999
Q ss_pred CCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCC--------CCCCcCCHHHHHhhhccC----CcEEEEcCCCCCc-cc
Q 012095 177 SPGDEVIIPAPFWVSYPEMARIADATPVILPTRI--------SENFLLDPKVLESKLTEK----SRLLILCSPSNPT-GS 243 (471)
Q Consensus 177 ~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~--------~~~~~ld~e~l~~~l~~~----~~~i~i~~p~NPt-G~ 243 (471)
+|||+|+.... |..+...+...|+.++.+..+. ...+.+|+++|++.+++. +.++++.+|+|+. |.
T Consensus 112 ~~Gd~Vi~~~~-f~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~ 190 (456)
T d1c7ga_ 112 KPGQYVAGNMY-FTTTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQ 190 (456)
T ss_dssp CTTEEEEESSC-CHHHHHHHHHTTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSB
T ss_pred CCCCeEecCcc-hHHHHHHHHHcCceeeeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccc
Confidence 99999987654 4455556778899988776532 123568999999999653 3477789999875 58
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEccCCCccc--c-----CCCCccccccCCC-C-CCceEEEecCCcccCccchhheee
Q 012095 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHII--Y-----APATHTSFASLPG-M-WERTLTVNGFSKAFAMTGWRLGYI 314 (471)
Q Consensus 244 ~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~--~-----~~~~~~~~~~~~~-~-~~~~i~~~S~SK~~g~~G~R~G~v 314 (471)
+++.+++++|.++|++| |+.+++|+++.... + .+....++..+.. . ..-.++..|++|.++.++ .|++
T Consensus 191 ~~~~~~l~~i~~~a~~~-~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~--GG~i 267 (456)
T d1c7ga_ 191 PVSMANMRAVHEMASTY-GIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNI--GGFL 267 (456)
T ss_dssp CCCHHHHHHHHHHHHHH-TCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSS--CEEE
T ss_pred eecHHHHHHHHHHHHHc-CCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEeccccccccc--eeEE
Confidence 89999999999999999 99999999975211 0 0111111111000 0 011266678999987443 3777
Q ss_pred EcC-HHHHHHHHHHHhcc-----cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCc
Q 012095 315 AGP-KHFVAACNKIQSQF-----TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG 388 (471)
Q Consensus 315 ~~~-~~~i~~l~~~~~~~-----~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~ 388 (471)
+++ +++.++++...... ..+.+.....++...+.+.. ..++ .++..++.+++.+.|.+. |+.+..|.+
T Consensus 268 ~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~-~~~~----l~~r~~~~~~L~e~L~~~-g~~vv~p~g 341 (456)
T d1c7ga_ 268 CMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAM-QYEY----IEHRVKQVRYLGDKLREA-GVPIVEPTG 341 (456)
T ss_dssp EESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHT-CHHH----HHHHHHHHHHHHHHHHHT-TCCBCSSCC
T ss_pred EcCCHHHHHHHHHhccccCCCcccchhhHHHHHHHHHHHHHhc-CHHH----HHHHHHHHHHHHHHHHhc-cCCcccCCC
Confidence 765 56777665432211 11223333333333333211 1222 233345557778888887 888888888
Q ss_pred ceEEeEecCCccC-CcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC-------------CCCCcEEEEeec---CHHHH
Q 012095 389 AFYLFIDFSTYYG-SEAEGFGKIENSESLCRYLLDKAQVALVPGDAF-------------GDDTCIRISYAA---SLTTL 451 (471)
Q Consensus 389 g~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f-------------~~~~~iRis~~~---~~e~i 451 (471)
++.++++...... ....+ ....++...|+.+.||...+...+ .....+|+++.. |+++|
T Consensus 342 ~~~v~vda~~~~~~i~~~~----~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~i 417 (456)
T d1c7ga_ 342 GHAVFLDARRFCPHLTQDQ----FPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHM 417 (456)
T ss_dssp SSEEEEEHHHHCTTSCGGG----CHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHH
T ss_pred CcceeEechhhccCCCccc----ccHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcccCCHHHH
Confidence 8888776432110 00011 135667777777779976542211 112469999874 89999
Q ss_pred HHHHHHHHHHHHh
Q 012095 452 QAAVERIKKGLLT 464 (471)
Q Consensus 452 ~~~~~~l~~~l~~ 464 (471)
+.+++.|+++.++
T Consensus 418 D~Vae~i~~v~~~ 430 (456)
T d1c7ga_ 418 DVVADGIIKLYQH 430 (456)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999864
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=8.6e-18 Score=163.43 Aligned_cols=214 Identities=15% Similarity=0.170 Sum_probs=164.0
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH----HHHcCCEEEEecCC
Q 012095 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTR 209 (471)
Q Consensus 134 ~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~G~~~~~v~~~ 209 (471)
...|.+.+++.- | .+..++++++..|+..++.+++++||.|++.+..|...... ....|.++.++..
T Consensus 52 ~~~le~~la~LE----g----g~~a~~~sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~- 122 (384)
T d1cs1a_ 52 RDVVQRALAELE----G----GAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQ- 122 (384)
T ss_dssp HHHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECT-
T ss_pred HHHHHHHHHHHh----C----CCceEEecChHHHHHHHHhhcccccceecccccccchhhhhhhhhhcccccccccccC-
Confidence 345666666653 3 46789999999999999999999999999999999776543 3445777776653
Q ss_pred CCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCC
Q 012095 210 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289 (471)
Q Consensus 210 ~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 289 (471)
.|.+.+++++.+++++||+.+|.|||..+.+ +++|+++|+++ ++++|+|+.+.--.+ ..+ ..
T Consensus 123 ------~d~~~~~~~~~~~t~~v~~EspsNP~l~v~D---i~~i~~ia~~~-g~~~vVDNT~atP~~----~~P-l~--- 184 (384)
T d1cs1a_ 123 ------GDEQALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREV-GAVSVVDNTFLSPAL----QNP-LA--- 184 (384)
T ss_dssp ------TCHHHHHHHHHTCCSEEEEECSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTCTTT----CCG-GG---
T ss_pred ------CCHHHHHhhccccccEEEEeccccccceecc---HHHHhhhhhhc-CcEEEEeccccCccc----ccc-cc---
Confidence 3889999999999999999999999999999 99999999999 999999999953111 111 12
Q ss_pred CCCceEEEecCCcccC-ccchhheeeEc-CHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Q 012095 290 MWERTLTVNGFSKAFA-MTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367 (471)
Q Consensus 290 ~~~~~i~~~S~SK~~g-~~G~R~G~v~~-~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~ 367 (471)
.+-.|++.|.+|.++ -...=.|.+++ ++++.+.+...+.....+++++..+.+..-|+. +.-..++..++
T Consensus 185 -~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~T-------L~lRm~~~~~n 256 (384)
T d1cs1a_ 185 -LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRT-------LVPRMELAQRN 256 (384)
T ss_dssp -GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTT-------HHHHHHHHHHH
T ss_pred -cCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhhccch-------hHHHHHHHHHH
Confidence 344599999999994 22234566766 566777777777777878888887776666654 55566667788
Q ss_pred HHHHHHHhcCCCCCe
Q 012095 368 RDFLVKSFGELEGVK 382 (471)
Q Consensus 368 r~~l~~~L~~~~g~~ 382 (471)
...+.+.|++.|.++
T Consensus 257 A~~lA~~L~~hp~V~ 271 (384)
T d1cs1a_ 257 AQAIVKYLQTQPLVK 271 (384)
T ss_dssp HHHHHHHHTTCTTEE
T ss_pred HHHHHHhcccCCcee
Confidence 888999999887663
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.81 E-value=8.8e-18 Score=163.29 Aligned_cols=212 Identities=14% Similarity=0.161 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHH----HcCCEEEEecCCC
Q 012095 135 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IADATPVILPTRI 210 (471)
Q Consensus 135 ~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~----~~G~~~~~v~~~~ 210 (471)
..|.+.|+++ .| .+..++++++..|+. ++..++++||.|++.++.|.+....++ ..|.++.++..
T Consensus 52 ~~le~~la~L----E~----~~~a~~fsSGMaAis-all~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~-- 120 (380)
T d1ibja_ 52 DALESLLAKL----DK----ADRAFCFTSGMAALS-AVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT-- 120 (380)
T ss_dssp HHHHHHHHHH----HT----CSEEEEESSHHHHHH-HHHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT--
T ss_pred HHHHHHHHHH----cC----CceEEehhhHHHHHH-HHHHhhCCCCEEEEEecccccccchhhhhhccccccccccCc--
Confidence 4455555554 33 356788888899997 566789999999999999988876654 46888887763
Q ss_pred CCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCC
Q 012095 211 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 290 (471)
Q Consensus 211 ~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~ 290 (471)
-+++++++++++++|+||+.+|.||+..+.+ +++|+++|+++ ++++|+|+.+..-. ...++ .
T Consensus 121 -----~~~~~~~~ai~~~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~-g~~~vVDnT~atP~----~~~Pl-~---- 182 (380)
T d1ibja_ 121 -----TKLDEVAAAIGPQTKLVWLESPTNPRQQISD---IRKISEMAHAQ-GALVLVDNSIMSPV----LSRPL-E---- 182 (380)
T ss_dssp -----TSHHHHHHHCCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHTT-TCEEEEECTTTCTT----TCCGG-G----
T ss_pred -----chHHHHHHHhccCccEEEecccccccccccc---HHHHHHHHHHc-CCeEEeeccccccc----ccccc-c----
Confidence 3889999999999999999999999999999 99999999999 99999999986411 11111 1
Q ss_pred CCceEEEecCCcccC-ccchhheeeEcC-HHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 012095 291 WERTLTVNGFSKAFA-MTGWRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 368 (471)
Q Consensus 291 ~~~~i~~~S~SK~~g-~~G~R~G~v~~~-~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r 368 (471)
.+-.|++.|.+|.++ -...=.|.++++ +++.+.+...+.....++++.....+..-|+. +..+.++..++.
T Consensus 183 ~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T-------l~lRm~~~~~nA 255 (380)
T d1ibja_ 183 LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKT-------MALRIEKQQENA 255 (380)
T ss_dssp TTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTT-------HHHHHHHHHHHH
T ss_pred cCCCEEEecccceeccccCccccccccchhhHHHHHHhhccccCCcCCHHHHHHHHhcchh-------hhhhHHHHHHHH
Confidence 344599999999985 222334666554 66788888888778888899887777776664 556666777788
Q ss_pred HHHHHHhcCCCCCe
Q 012095 369 DFLVKSFGELEGVK 382 (471)
Q Consensus 369 ~~l~~~L~~~~g~~ 382 (471)
..+.+.|++.|.++
T Consensus 256 ~~lA~~L~~hp~V~ 269 (380)
T d1ibja_ 256 RKIAMYLSSHPRVK 269 (380)
T ss_dssp HHHHHHHHTCTTCC
T ss_pred HHHHHHHHhCCCee
Confidence 88888898876654
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.81 E-value=8.5e-19 Score=174.23 Aligned_cols=332 Identities=13% Similarity=0.102 Sum_probs=211.5
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCC----CCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP----NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 171 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~----~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~ 171 (471)
++|.|..+.-.. .|..+.+++.+.+.+...+... .....++.+.+.+.+++..| .++++|++|.++|+++..+
T Consensus 27 ~~iYLd~as~g~-~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llg--a~~~ei~~~~~~T~~~~~~ 103 (404)
T d1qz9a_ 27 GVIYLDGNSLGA-RPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIG--ARDGEVVVTDTTSINLFKV 103 (404)
T ss_dssp TCEECCTTTSCC-CBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTT--CCTTSEEECSCHHHHHHHH
T ss_pred CCEEcCCccccc-CCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhC--CCCCcEEEecCchHHHHHH
Confidence 478887776443 3677888888887653322211 01122344444555554456 5889999999999999876
Q ss_pred HHHh------cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCC
Q 012095 172 VLAV------CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245 (471)
Q Consensus 172 ~~~l------~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~ 245 (471)
+... ..+|+.|++.+-.+.+........+.++..++.... ...+++.++++++++|++|.+++.+|.||..+
T Consensus 104 ~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~T~lV~i~~v~~~tG~~~ 181 (404)
T d1qz9a_ 104 LSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLR--LVDSPEELPQAIDQDTAVVMLTHVNYKTGYMH 181 (404)
T ss_dssp HHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEE--EESSGGGHHHHCSTTEEEEEEESBCTTTCBBC
T ss_pred hhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeeeceecc--ccccchhHHHhcCCCceEEEEeccccccccee
Confidence 6532 367888888887776654444333344433333322 23688999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHH
Q 012095 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 325 (471)
Q Consensus 246 ~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~ 325 (471)
| +++|+++|+++ ++++++|.++... .....+.. .+..+++.|..|.+..+..-.|+++.++.+.+.+.
T Consensus 182 p---v~~i~~~~~~~-~~~~~vD~~q~~g----~~~~~~~~----~~~d~~~~s~~K~~~~~~g~~g~~~~~~~~~~~~~ 249 (404)
T d1qz9a_ 182 D---MQALTALSHEC-GALAIWDLAHSAG----AVPVDLHQ----AGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVP 249 (404)
T ss_dssp C---HHHHHHHHHHH-TCEEEEECTTTTT----TSCCCHHH----HTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSC
T ss_pred c---HHHHhcccccc-ccceeEEeecccc----cccccccc----ccceEEEEechhhcccCCceEEEEEechhhhhhCC
Confidence 9 99999999999 9999999998752 22222222 23447888889987534334677777766554332
Q ss_pred H-----------------------HHhcccCCCChHHHHHHHHHHhcc-CCChHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 012095 326 K-----------------------IQSQFTSGASSISQKAGVAALGLG-YAGGEVVSKMVKAFRERRDFLVKSFGELEGV 381 (471)
Q Consensus 326 ~-----------------------~~~~~~~~~~~~~q~aa~~~L~~~-~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~ 381 (471)
. ........++..........+... ......+.+...........+...+...+|+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 329 (404)
T d1qz9a_ 250 QPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHEL 329 (404)
T ss_dssp CSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred ccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHhhccCCCE
Confidence 0 011112234444444444433321 0122334444444444444455555566788
Q ss_pred eeeCCC-----cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--c-CHHHHHH
Q 012095 382 KMSEPQ-----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--A-SLTTLQA 453 (471)
Q Consensus 382 ~~~~p~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~--~-~~e~i~~ 453 (471)
++..|. +++ +.+.++ ++.++.+.|.+ .||.+.. ..++.||||++ . +++||++
T Consensus 330 ~i~~p~~~~~r~~~-vsf~~~--------------~~~~v~~~L~~-~gi~~~~----r~~~~lRiS~~h~ynt~~did~ 389 (404)
T d1qz9a_ 330 TLVTPREHAKRGSH-VSFEHP--------------EGYAVIQALID-RGVIGDY----REPRIMRFGFTPLYTTFTEVWD 389 (404)
T ss_dssp EECSCSSGGGBCSE-EEEECT--------------THHHHHHHHHT-TTEECEE----ETTTEEEEECCTTTCCHHHHHH
T ss_pred EEECCCCccceeeE-EEEecC--------------CHHHHHHHHHH-CCCEEee----cCCCeEEEECCCCCCCHHHHHH
Confidence 887553 344 445554 56788888765 5886531 23468999996 2 8999999
Q ss_pred HHHHHHHHHHh
Q 012095 454 AVERIKKGLLT 464 (471)
Q Consensus 454 ~~~~l~~~l~~ 464 (471)
+++.|++++++
T Consensus 390 ~~~~L~~vl~~ 400 (404)
T d1qz9a_ 390 AVQILGEILDR 400 (404)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999975
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=2.4e-18 Score=172.08 Aligned_cols=357 Identities=11% Similarity=0.073 Sum_probs=218.8
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+++||+..|. ..++. ++.+.+++.+++.+..+. .+.....+....+++.+.+..... ..+.++++++++++..
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~-~~~~~~~~~~~~la~~l~~~~p~~-~~~~v~f~~sGseA~e 115 (425)
T d1sffa_ 38 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHT-CFQVLAYEPYLELCEIMNQKVPGD-FAKKTLLVTTGSEAVE 115 (425)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCC-CTTTEECHHHHHHHHHHHHHSSCS-SCEEEEEESSHHHHHH
T ss_pred CCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhcCCc-ccccccCcHHHHHHHHHHhhhhhc-ccceeeeeccccchhh
Confidence 688999999885 45554 789999999988663321 122233455566777776655321 2358999999999999
Q ss_pred HHHHHhcC--CCCeEEEcCCCCCChHHHHHHc-CC-------------EEEEecCC--CCCCCcCC----HHHHHhhhc-
Q 012095 170 QAVLAVCS--PGDEVIIPAPFWVSYPEMARIA-DA-------------TPVILPTR--ISENFLLD----PKVLESKLT- 226 (471)
Q Consensus 170 ~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~-G~-------------~~~~v~~~--~~~~~~ld----~e~l~~~l~- 226 (471)
.+++.... ..+.|+..+.+|++....+... |. .....+.+ ..+..... .+.+.....
T Consensus 116 ~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (425)
T d1sffa_ 116 NAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAA 195 (425)
T ss_dssp HHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCC
T ss_pred hHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHhccc
Confidence 88886532 2367888888888866544432 21 11111211 11111001 111111111
Q ss_pred -cCCcEEEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCC-CccccccCCCCCCceEEEecCCcc
Q 012095 227 -EKSRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA-THTSFASLPGMWERTLTVNGFSKA 303 (471)
Q Consensus 227 -~~~~~i~i~~p~NPtG-~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~~i~~~S~SK~ 303 (471)
.+..++++..-+.-.| ...+++.++.|.++|++| |+++|.||++.++.-.|. .......+.+ | +-+++|.
T Consensus 196 ~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~-gillI~DEV~tG~gR~g~~~a~~~~gv~P--D----i~~~gK~ 268 (425)
T d1sffa_ 196 PEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEH-GIMLIADEVQSGAGRTGTLFAMEQMGVAP--D----LTTFAKS 268 (425)
T ss_dssp GGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSSGGGGTTSCC--S----EEEECGG
T ss_pred ccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHc-CceEEeccccccCCCcchhhHHHhcCCCc--c----ceecccc
Confidence 1334454433343355 467899999999999999 999999999997532222 1111222222 2 4458899
Q ss_pred cCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCee
Q 012095 304 FAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 383 (471)
Q Consensus 304 ~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~ 383 (471)
+| .|+.+|.+++++++++.+.......+++.++++.+++.+.|+.-.. .+..+.....-+..++.+.+.+++.+-+.-
T Consensus 269 l~-gG~P~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~-~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~ 346 (425)
T d1sffa_ 269 IA-GGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ-ENLLQKANDLGQKLKDGLLAIAEKHPEIGD 346 (425)
T ss_dssp GG-TSSCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred cC-CCcceEEEEEcHHHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHHH-hhhhhhhhhhhhhhhhhhhhhHhhCCceEE
Confidence 98 7899999999999998876655566788999999999998875210 233344433334444555555555543333
Q ss_pred eCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHH
Q 012095 384 SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKG 461 (471)
Q Consensus 384 ~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~ 461 (471)
+...|.+ +.+.+......... .......+.++|+++ ||++.++... .+.+|++... ++++|++++++|+++
T Consensus 347 vrg~Gl~-~~i~f~~~~~~~~~---~~~~~~~~~~~l~~~-Gvl~~~~g~~--~n~i~~~PpL~it~~eid~~l~~l~~a 419 (425)
T d1sffa_ 347 VRGLGAM-IAIELFEDGDHNKP---DAKLTAEIVARARDK-GLILLSCGPY--YNVLRILVPLTIEDAQIRQGLEIISQC 419 (425)
T ss_dssp EEEETTE-EEEEEBGGGCTTSB---CHHHHHHHHHHHHHT-TEECEEESTT--SCEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EEccccE-EEEEEeccCccCCc---cHHHHHHHHHHHHHC-CCEEeccCCC--CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3344444 34444211000000 000235677888876 9998875432 3578998654 999999999999999
Q ss_pred HHhhCC
Q 012095 462 LLTLRP 467 (471)
Q Consensus 462 l~~~~~ 467 (471)
++++++
T Consensus 420 l~eikk 425 (425)
T d1sffa_ 420 FDEAKQ 425 (425)
T ss_dssp HHHHCC
T ss_pred HHHhcC
Confidence 998863
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.80 E-value=6e-18 Score=166.72 Aligned_cols=328 Identities=14% Similarity=0.127 Sum_probs=220.6
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+++||+..|. ..++. +|.+.+++.+++.+.. |.+..-..+.+..+++.+..... ...+.+.++++++++..
T Consensus 35 dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~--~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~f~~sGseA~e 110 (387)
T d1vefa1 35 EGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLM--AMPQTLPTPMRGEFYRTLTAILP--PELNRVFPVNSGTEANE 110 (387)
T ss_dssp TSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCC--CCCTTSCCHHHHHHHHHHHHTSC--TTEEEEEEESSHHHHHH
T ss_pred CCCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHhhc--ccccccCCchHHHHHHHhhhhcc--ccceeeccccCchHHHH
Confidence 688899997754 44554 7899999999987632 22222234666677776655433 23357999999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCChHHHHHHcCC-------------EEEEecCCCCCCCcCCHHHHHhhhccCCcEEEE
Q 012095 170 QAVLAVC--SPGDEVIIPAPFWVSYPEMARIADA-------------TPVILPTRISENFLLDPKVLESKLTEKSRLLIL 234 (471)
Q Consensus 170 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i 234 (471)
.+++... .....|+....+|++....+..... .+..+|. .|.+.|++.+.++..+|++
T Consensus 111 ~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~-------~d~~~l~~~~~~~iAavi~ 183 (387)
T d1vefa1 111 AALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-------NDVEALKRAVDEETAAVIL 183 (387)
T ss_dssp HHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-------TCHHHHHHHCCTTEEEEEE
T ss_pred HHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCC-------CCHHHHHHhcCCCeEEEEE
Confidence 9888752 2336788888888876544333221 2334442 2889999999887777666
Q ss_pred cCCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCC-ccccccCCCCCCceEEEecCCcccCccchhhe
Q 012095 235 CSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT-HTSFASLPGMWERTLTVNGFSKAFAMTGWRLG 312 (471)
Q Consensus 235 ~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G 312 (471)
..-+.-.|. ..+++.+++|.++|++| |+++|.||++.+|.-.|.. ......+.+ | +-+++|.++ .|..++
T Consensus 184 EPi~g~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEV~tGfgR~G~~~~~~~~~v~P--D----i~~~gK~l~-gG~~~~ 255 (387)
T d1vefa1 184 EPVQGEGGVRPATPEFLRAAREITQEK-GALLILDEIQTGMGRTGKRFAFEHFGIVP--D----ILTLAKALG-GGVPLG 255 (387)
T ss_dssp CSEETTTTSEECCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSSTHHHHTCCC--S----EEEECGGGG-TTSSCE
T ss_pred ECCCCCCCCccCCHHHHHHHHHHHHHc-CceEEecccccccCccCCCcccccCCcCC--c----eeeecccCC-CCcccc
Confidence 433444564 68899999999999999 9999999999986333321 111122322 2 445789998 889999
Q ss_pred eeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCC--CCCeeeCCCcce
Q 012095 313 YIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL--EGVKMSEPQGAF 390 (471)
Q Consensus 313 ~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~--~g~~~~~p~~g~ 390 (471)
.+++.+++++.+.......+++.++++..++.+.|+.- + -.+..++.++.-+++.+.|+++ +.+.-+... |+
T Consensus 256 ~~~~~~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l---~--~~~~~~~v~~~g~~l~~~L~~l~~~~v~~vrg~-Gl 329 (387)
T d1vefa1 256 VAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYL---E--RTRLWERAAELGPWFMEKLRAIPSPKIREVRGM-GL 329 (387)
T ss_dssp EEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHH---H--HHTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEE-TT
T ss_pred ccccceeeeeccccCCccccCCCCcchhhhcccchhhc---c--cccccchHhhhhHHHHHHHHhcCCCceEEEeec-ce
Confidence 99999988887766555667788999999999988741 1 1234455555666677777665 222222222 44
Q ss_pred EEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012095 391 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGL 462 (471)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l 462 (471)
+..+.+.+. ....+.+.++++ |+.+.+.. .+.+|++... ++++|++++++|+++|
T Consensus 330 ~~~ie~~~~------------~~~~~~~~~~~~-g~l~~~~g----~~~ir~~Ppl~it~~~ld~~~~~i~~aL 386 (387)
T d1vefa1 330 MVGLELKEK------------AAPYIARLEKEH-RVLALQAG----PTVIRFLPPLVIEKEDLERVVEAVRAVL 386 (387)
T ss_dssp EEEEEESSC------------SHHHHHHHHHHH-CEECEESS----TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCC------------chHHHHHHHHHC-CCeEEecC----CCEEEEECCccCCHHHHHHHHHHHHHHh
Confidence 455666542 445566655655 77766532 3578888653 9999999999999886
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.80 E-value=3.4e-18 Score=170.83 Aligned_cols=344 Identities=14% Similarity=0.128 Sum_probs=209.1
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+++||+..|. ..++- +|.+++|+.+++.+...... ...+...+++.+....+ ..+.+.+++++++|+
T Consensus 49 ~~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~~~~~~~~~----~~~~~~~la~~~~~~~~---~~~~v~f~~sGseA~ 121 (427)
T d2gsaa_ 49 VDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGA----PCALENVLAEMVNDAVP---SIEMVRFVNSGTEAC 121 (427)
T ss_dssp TTSCEEEESSGGGTTTTTCBTCHHHHHHHHHHHTTCSCCSS----CCHHHHHHHHHHHHHST---TCSEEEEESSHHHHH
T ss_pred CCCCEEEEechhHHHHhccCCcHHHHHHHHHHHHhcCcccc----chhHHHHHHHHHHhhCC---ccccccccCCcHHHH
Confidence 3688999998775 34443 78999999999876433221 23566677777776544 447899999999999
Q ss_pred HHHHHHhc--CCCCeEEEcCCCCCChHHHHH--------HcCC------------EEEEecCCCCCCCcCCHHHHHhhhc
Q 012095 169 LQAVLAVC--SPGDEVIIPAPFWVSYPEMAR--------IADA------------TPVILPTRISENFLLDPKVLESKLT 226 (471)
Q Consensus 169 ~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~--------~~G~------------~~~~v~~~~~~~~~ld~e~l~~~l~ 226 (471)
+.+++... ...+.|+..+.+|++....+. ..+. +...++. -|++.+++.+.
T Consensus 122 e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-------~~~~~le~~~~ 194 (427)
T d2gsaa_ 122 MAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY-------NDLEAVKALFA 194 (427)
T ss_dssp HHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECT-------TCHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCc-------chHHHHHHHHH
Confidence 99988653 234678888888876432211 1111 1222221 38999999887
Q ss_pred c---CCcEEEEcCC-CCCcc-cCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCC
Q 012095 227 E---KSRLLILCSP-SNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 301 (471)
Q Consensus 227 ~---~~~~i~i~~p-~NPtG-~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 301 (471)
+ +..+|++ .| +.-.| ...+++.+++|.++|++| |+++|.||++.++.. +.. .....++-..| +-+++
T Consensus 195 ~~~~~iaavi~-Epi~g~~G~~~~~~~~l~~l~~lc~~~-~~llI~DEv~tG~r~-g~~-~~~~~~gi~PD----i~~~g 266 (427)
T d2gsaa_ 195 ENPGEIAGVIL-EPIVGNSGFIVPDAGFLEGLREITLEH-DALLVFDEVMTGFRI-AYG-GVQEKFGVTPD----LTTLG 266 (427)
T ss_dssp TSTTTEEEEEE-CSSBCSSSCBCCCTTHHHHHHHHHHHT-TCEEEEECTTTBTTT-BTT-CHHHHTTCCCS----EEEEC
T ss_pred hCCCCeEEEEE-cCCcCCCCCccCCHHHHHHHHHHHHHh-ceeeeecccccccee-ccc-chHHhcCCCHH----HHhhh
Confidence 5 3334444 45 33345 567888999999999999 999999999988733 321 12222221112 34477
Q ss_pred cccCccchhheeeEcCHHHHHHHHHH---HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCC
Q 012095 302 KAFAMTGWRLGYIAGPKHFVAACNKI---QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL 378 (471)
Q Consensus 302 K~~g~~G~R~G~v~~~~~~i~~l~~~---~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 378 (471)
|.+| .|..+|.+++.+++++.+... ....+++.++++.+++.+.|+.-.. .+..++..+.-+..++.+.+..++.
T Consensus 267 K~lg-gG~p~~a~~~~~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~-~~l~~~~~~~g~~l~~~L~~l~~~~ 344 (427)
T d2gsaa_ 267 KIIG-GGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ-PGTYEYLDQITKRLSDGLLAIAQET 344 (427)
T ss_dssp GGGG-TTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccC-CCcceeeeeehHHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhh-hhHHhhhhHHHHHHHHHHHHHHhhc
Confidence 9998 889999999999998877542 2234677899999999998875221 2223333322222333333333333
Q ss_pred CCCee-eCCCcceEEeEecCCccCC-cccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHH
Q 012095 379 EGVKM-SEPQGAFYLFIDFSTYYGS-EAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVE 456 (471)
Q Consensus 379 ~g~~~-~~p~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~i~~~~~ 456 (471)
+..+ ....++++-+.-....+.. .............+...|+++ ||++.|+.. ..+-+++..++++|+++++
T Consensus 345 -~~~~~v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~~-Gv~l~p~~~----~~~~~~l~~Te~dId~~l~ 418 (427)
T d2gsaa_ 345 -GHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQ-GIYLAPSQF----EAGFTSLAHTEEDIDATLA 418 (427)
T ss_dssp -TCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHT-TEECCSSTT----SCEECCTTCCHHHHHHHHH
T ss_pred -CCCcEEcccCCeEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHHC-CEEECCCCC----cceeCCCCCCHHHHHHHHH
Confidence 2211 1223444322111111100 000000000123566777876 999988542 1223566679999999999
Q ss_pred HHHHHHHhh
Q 012095 457 RIKKGLLTL 465 (471)
Q Consensus 457 ~l~~~l~~~ 465 (471)
+|+++++++
T Consensus 419 al~~al~~L 427 (427)
T d2gsaa_ 419 AARTVMSAL 427 (427)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHHhC
Confidence 999998764
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=8.7e-18 Score=166.50 Aligned_cols=333 Identities=14% Similarity=0.104 Sum_probs=214.8
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
..|+.+||+..|. ..++- ++.+.+|+.+++.+... ..........+.+++.+.+.. ..+.+.++++++++.
T Consensus 38 ~dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~sGseA~ 111 (404)
T d2byla1 38 VEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTL--TSRAFYNNVLGEYEEYITKLF----NYHKVLPMNTGVEAG 111 (404)
T ss_dssp TTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCC--CCTTEEESSHHHHHHHHHHHH----TCSEEEEESSHHHHH
T ss_pred CCCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhhCCC--cccccccchHHHHHHhhhhcc----cccccccccCccccc
Confidence 3688899998876 33443 78899999999876321 111111122233344444333 347899999999999
Q ss_pred HHHHHHhc---------CC-CCeEEEcCCCCCChHHHHHHcC-------------CEEEEecCCCCCCCcCCHHHHHhhh
Q 012095 169 LQAVLAVC---------SP-GDEVIIPAPFWVSYPEMARIAD-------------ATPVILPTRISENFLLDPKVLESKL 225 (471)
Q Consensus 169 ~~~~~~l~---------~~-gd~Vlv~~p~y~~~~~~~~~~G-------------~~~~~v~~~~~~~~~ld~e~l~~~l 225 (471)
..+++... .. ...++...-+|........... ..+..+|. .|++++++.+
T Consensus 112 e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~-------~d~~~l~~~l 184 (404)
T d2byla1 112 ETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLPALERAL 184 (404)
T ss_dssp HHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECT-------TCHHHHHHHH
T ss_pred hhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecc-------cCHHHHHHhc
Confidence 99988752 12 2467766777765433222111 11233332 2889999998
Q ss_pred ccC-CcEEEEcCC-CCCcc-cCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCc
Q 012095 226 TEK-SRLLILCSP-SNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK 302 (471)
Q Consensus 226 ~~~-~~~i~i~~p-~NPtG-~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 302 (471)
.++ ..+|++ .| +...| ...+++.+++|.++|++| ++++|.||++.+|.-.|.. ..+....-..| | -+|+|
T Consensus 185 ~~~~iAavii-EPi~g~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEV~tGfgR~G~~-~a~~~~gv~PD--i--~~~gK 257 (404)
T d2byla1 185 QDPNVAAFMV-EPIQGEAGVVVPDPGYLMGVRELCTRH-QVLFIADEIQTGLARTGRW-LAVDYENVRPD--I--VLLGK 257 (404)
T ss_dssp TSTTEEEEEE-CSSBTTTTSBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGGGGTCCCS--E--EEECG
T ss_pred CCCCeEEEEE-CCccCCCCCccCCHHHHHHHHHHHHhc-CeEEEeecccccccccccc-chhhhcCCCCC--E--EEECc
Confidence 654 444554 45 44456 677889999999999999 9999999999876333321 11111111112 3 36899
Q ss_pred ccCccc-hhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCC--
Q 012095 303 AFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE-- 379 (471)
Q Consensus 303 ~~g~~G-~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-- 379 (471)
.++ .| +.+|.+++++++.+.+.......+++.++++.+++.+.|+.- + -+.+.+..++.-+++.+.|.++.
T Consensus 258 ~l~-gG~~p~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i---~--~~~l~~~~~~~g~~l~~~l~~l~~~ 331 (404)
T d2byla1 258 ALS-GGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVL---E--EENLAENADKLGIILRNELMKLPSD 331 (404)
T ss_dssp GGG-TTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHH---H--HTTHHHHHHHHHHHHHHHHHTSCTT
T ss_pred hhh-CCCccceeeeechhhhhccCCCCCCcCCCcCHHHHHHHHHHHHHH---H--hcCchhhhhHhhHHHHHHHHhhccc
Confidence 998 66 899999999999887766555567788999999999988751 1 12344455555666677666652
Q ss_pred CCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHH
Q 012095 380 GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVER 457 (471)
Q Consensus 380 g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~ 457 (471)
.+.-+... |++.-+.+.+... ....++.++|+++ ||++.+.. .+.+|++... ++++|++++++
T Consensus 332 ~i~~vRg~-Gl~~~i~~~~~~~---------~~~~~~~~~l~~~-Gvl~~~~~----~~~i~l~PpL~it~~~id~~~~~ 396 (404)
T d2byla1 332 VVTAVRGK-GLLNAIVIKETKD---------WDAWKVCLRLRDN-GLLAKPTH----GDIIRFAPPLVIKEDELRESIEI 396 (404)
T ss_dssp TEEEEEEE-TTEEEEEECCCSS---------CCHHHHHHHHHHT-TEECEEEE----TTEEEECCCTTCCHHHHHHHHHH
T ss_pred cceeeeec-ccEEEEEEecCCc---------hhHHHHHHHHHhC-CeEEecCC----CCEEEEECCcCCCHHHHHHHHHH
Confidence 12222223 3334445533211 2567899999876 99987732 3578998654 99999999999
Q ss_pred HHHHHHhh
Q 012095 458 IKKGLLTL 465 (471)
Q Consensus 458 l~~~l~~~ 465 (471)
|+++++++
T Consensus 397 l~~al~~f 404 (404)
T d2byla1 397 INKTILSF 404 (404)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHcC
Confidence 99999764
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.80 E-value=5.9e-17 Score=158.04 Aligned_cols=213 Identities=14% Similarity=0.175 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEecCCC
Q 012095 135 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRI 210 (471)
Q Consensus 135 ~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~G~~~~~v~~~~ 210 (471)
..|.+.|+++. | .+..++++++..|+..++.+++++||.|++.+..|.+....+ ...|.++..++.
T Consensus 70 ~~LE~~la~LE----g----g~~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~-- 139 (398)
T d1qgna_ 70 VVLEEKISALE----G----AESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDP-- 139 (398)
T ss_dssp HHHHHHHHHHH----T----CSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECS--
T ss_pred HHHHHHHHHHh----C----CceEEEecCcchHHHHHHhhcccccccccccccccchhhhhhcccccccccccccccc--
Confidence 44555565553 3 468899999999999999999999999999999998876554 457888887763
Q ss_pred CCCCcCCHHHHH-hhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCC
Q 012095 211 SENFLLDPKVLE-SKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289 (471)
Q Consensus 211 ~~~~~ld~e~l~-~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 289 (471)
.+.+..+ +.+.+++++||+.+|.|||..+.+ +++|+++|+++ ++++|+|+.+.--. .+..+
T Consensus 140 -----~~~~~~~~~~~~~~t~~v~~EspsNP~l~v~D---i~~ia~ia~~~-g~~~vVDnT~atP~-------~~~Pl-- 201 (398)
T d1qgna_ 140 -----ADVGALELALNQKKVNLFFTESPTNPFLRCVD---IELVSKLCHEK-GALVCIDGTFATPL-------NQKAL-- 201 (398)
T ss_dssp -----SCHHHHHHHHHHSCEEEEEEESSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTCTT-------TCCTT--
T ss_pred -----cchhhhhhhhccccceEEEccCccccccccch---HHHHHHHHhhc-CCEEEecceeeccc-------cCCch--
Confidence 2444444 455789999999999999999999 99999999999 99999999986311 11111
Q ss_pred CCCceEEEecCCcccC-ccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 012095 290 MWERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 368 (471)
Q Consensus 290 ~~~~~i~~~S~SK~~g-~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r 368 (471)
..+-.|++.|.+|.++ -...=.|.+++++++++.++.....+..++++.....+..-|+. +..+.++..++.
T Consensus 202 ~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T-------L~lRm~~~~~nA 274 (398)
T d1qgna_ 202 ALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKT-------LHLRVQQQNSTA 274 (398)
T ss_dssp TTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGG-------HHHHHHHHHHHH
T ss_pred hhCCCEEEEechhhcCcccceeehhhcchhhhhhhhhhhcccCCCcCCHHHHHHHHhcchH-------HHHHHHHHHHHH
Confidence 1344599999999985 22233577888999999999888888888888887766665554 556667777888
Q ss_pred HHHHHHhcCCCCCe
Q 012095 369 DFLVKSFGELEGVK 382 (471)
Q Consensus 369 ~~l~~~L~~~~g~~ 382 (471)
..+.+.|++.|.++
T Consensus 275 ~~lA~~L~~hp~V~ 288 (398)
T d1qgna_ 275 LRMAEILEAHPKVR 288 (398)
T ss_dssp HHHHHHHHTCTTEE
T ss_pred HHHHHHHHhCCCee
Confidence 88889998877654
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.79 E-value=2.6e-18 Score=172.55 Aligned_cols=294 Identities=14% Similarity=0.125 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCC-CCC
Q 012095 137 LRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPVILPTRI-SEN 213 (471)
Q Consensus 137 lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~ 213 (471)
+...+...+.+..|. ......+..|+++++..++.+.. .+++.|+++.-.|+++...+..+|++++.|+... ++.
T Consensus 114 ~~~~~~~~~~~~~g~--~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~ 191 (434)
T d2z67a1 114 LTNKILESFFKQLGL--NVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDR 191 (434)
T ss_dssp HHHHHHHHHHHHTTC--CCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTE
T ss_pred HHHHHHHHHHHhcCC--CcceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCc
Confidence 434444445555664 33455666777777776666653 3789999999999999999999999999887533 334
Q ss_pred CcCCHHHHHhhhcc-----CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccc-cCCCCccccccC
Q 012095 214 FLLDPKVLESKLTE-----KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII-YAPATHTSFASL 287 (471)
Q Consensus 214 ~~ld~e~l~~~l~~-----~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~ 287 (471)
+.+|+++|++++++ ++.+|++.+|++++|.+.+ +++|+++|++| ++++++|++|+... +.+........
T Consensus 192 ~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~---l~~i~~~~~~~-~~~l~vD~a~g~~~~~~~~~~~~~~~- 266 (434)
T d2z67a1 192 VYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD---IVEIAKICENY-DIPHIINGAYAIQNNYYLEKLKKAFK- 266 (434)
T ss_dssp EECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHH-TCCEEEECTTTTTCHHHHHHHHHHHT-
T ss_pred cCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccC---HHHHHHHHHHh-CCeEEEeccchhhhhhcccccccccc-
Confidence 67999999999964 4667778999999999999 99999999999 99999999997532 11111111111
Q ss_pred CCCCCceEEEecCCcccCccchhheeeE-cCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 012095 288 PGMWERTLTVNGFSKAFAMTGWRLGYIA-GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366 (471)
Q Consensus 288 ~~~~~~~i~~~S~SK~~g~~G~R~G~v~-~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~ 366 (471)
.+-.+++.|++|.++. +...|++. .++++++++.+.........+.....++...+. .+...+..++..+
T Consensus 267 ---~~~D~~~~s~hK~l~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~-----~~g~~~~~~~~~~ 337 (434)
T d2z67a1 267 ---YRVDAVVSSSDKNLLT-PIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMG-----SKNYLELVKNQKN 337 (434)
T ss_dssp ---SCCSEEEEEHHHHHCC-CSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred ---CCcceEEEcCcccccc-CCCccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHH-----HhcchhHHHHHHH
Confidence 2344788899998863 33445555 456677666544332222223333333333332 3445556666666
Q ss_pred HHHHHHHHhcCC---CCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEEC----C-------C
Q 012095 367 RRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP----G-------D 432 (471)
Q Consensus 367 ~r~~l~~~L~~~---~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~p----g-------~ 432 (471)
+++++.+.|+++ .|..+..+.....+.+.+. .+..++...|.++ ||.... . .
T Consensus 338 ~a~~l~~~L~~l~~~~g~~ll~~~~~~~~~~~~~-------------~~~~~l~~~L~~~-gI~g~~v~~~l~~~g~~~~ 403 (434)
T d2z67a1 338 SKKLLDELLNDLSKKTGGKFLDVESPIASCISVN-------------SDPVEIAAKLYNL-RVTGPRGIKKTDHFGNCYL 403 (434)
T ss_dssp HHHHHHHHHHHHHHHSSCCBCCCCCSSEEEEECS-------------SCHHHHHHHHHHT-TEESCEEECTTCHHHHTCS
T ss_pred HHHHHHHHHHHhhhhcCceecCCCCCceeeeecC-------------CCHHHHHHHHHHc-CCeeeehhhhccccCeeee
Confidence 667776666653 3555544433333333332 2677888888766 885321 1 1
Q ss_pred CCCCCCcEEEEeec--CHHHHHHHHHHHHH
Q 012095 433 AFGDDTCIRISYAA--SLTTLQAAVERIKK 460 (471)
Q Consensus 433 ~f~~~~~iRis~~~--~~e~i~~~~~~l~~ 460 (471)
.++..+++|++++. ++|||+.++++|++
T Consensus 404 ~~~~~~~l~~~~s~~~T~edID~~i~~L~k 433 (434)
T d2z67a1 404 GTYTHDYIVMNAAIGVRTEDIVNSVSKLEK 433 (434)
T ss_dssp SCCSCCEEEEECCTTCCHHHHHHHHHHHHT
T ss_pred cccCCCeEEEecCCCCCHHHHHHHHHHHhc
Confidence 22345789998876 99999999999875
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.79 E-value=4.5e-18 Score=166.22 Aligned_cols=321 Identities=13% Similarity=0.126 Sum_probs=207.7
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCC--CCCCHHHHHHHHHHHHHHhCCCCCCCc--EEEeCChHHHHHHHHHHhcCCCCe
Q 012095 106 DFDTPVLIAEAGINAIREGFTRYTP--NAGTLELRSAICHKLKEENGLSYTPDQ--ILVSNGAKQSILQAVLAVCSPGDE 181 (471)
Q Consensus 106 ~~~~p~~v~~a~~~~~~~~~~~Y~~--~~G~~~lr~~ia~~~~~~~g~~~~~~~--i~it~G~~~al~~~~~~l~~~gd~ 181 (471)
+.+.|+.|++|+.+. ..+++++ ..-..+.|+.+++++ |. .+++ +++|+|+|+++..++..+..+++.
T Consensus 8 P~~~~~~V~~A~~~~---~~~~~~~~~~~~~~~~r~~l~~l~----~~--~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~ 78 (361)
T d1m32a_ 8 PLTTSRTVKEAMLFD---SCTWDDDYNIGVVEQIRQQLTALA----TA--SEGYTSVLLQGSGSYAVEAVLGSALGPQDK 78 (361)
T ss_dssp SCCCCHHHHHTTCCC---CCTTSHHHHTTTHHHHHHHHHHHH----CS--SSSEEEEEEESCHHHHHHHHHHHSCCTTCC
T ss_pred CCCCCHHHHHHhhhh---ccCCCcHHHHHHHHHHHHHHHHHh----CC--CCCCEEEEECCCHHHHHHHHHHHhhhhccc
Confidence 334567777765421 1222221 122345566666554 53 4443 778889999999999999988887
Q ss_pred EEEcCCCCCC--hHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHh
Q 012095 182 VIIPAPFWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK 259 (471)
Q Consensus 182 Vlv~~p~y~~--~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~ 259 (471)
+++....+.. ........+.....+..........+.+.......++++++.++..+|-||..++ +++|.++|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~---i~~i~~~~~~ 155 (361)
T d1m32a_ 79 VLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNP---IDEVGALAHR 155 (361)
T ss_dssp EEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC---HHHHHHHHHH
T ss_pred cceeeehhhhhhHHHHhhhhhcccccccccccCCccchhhHHHHHhccCccceEEEeeecccccchh---hhhhhhhhcc
Confidence 7766554332 2234556666666666554433333445555556778999999999999999999 8999999999
Q ss_pred CCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccC-ccchhheeeEcCHHHHHHH--------------
Q 012095 260 HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAAC-------------- 324 (471)
Q Consensus 260 ~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~R~G~v~~~~~~i~~l-------------- 324 (471)
| ++++++|.++.... .... +.. .+..+++.|..|.++ -+| +|+++.+++.++.+
T Consensus 156 ~-g~~~~vDa~qs~G~----~~~d---~~~-~~~D~~~~s~~K~l~gp~G--~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 224 (361)
T d1m32a_ 156 Y-GKTYIVDAMSSFGG----IPMD---IAA-LHIDYLISSANKCIQGVPG--FAFVIAREQKLAACKGHSRSLSLDLYAQ 224 (361)
T ss_dssp H-TCEEEEECTTTTTT----SCCC---TTT-TTCSEEEEESSSTTCCCSS--EEEEEEEHHHHTTCTTCCSCSTTCHHHH
T ss_pred c-ceeeEeecccccCc----cccc---ccc-cccceEEeeecccccCCCC--ceEEEechhhhhhhccccccccccchhh
Confidence 9 99999999998632 1222 222 355688999999884 345 78888887655432
Q ss_pred ----HHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC---cceEEeEecC
Q 012095 325 ----NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ---GAFYLFIDFS 397 (471)
Q Consensus 325 ----~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~---~g~~~~~~~~ 397 (471)
.........+++.....+...++.... .+........+.+...+.+.+.++.. |.....+. +...+.+.+|
T Consensus 225 ~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~rs~~v~~~~~p 302 (361)
T d1m32a_ 225 WRCMEDNHGKWRFTSPTHTVLAFAQALKELA-KEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDDELHSPIITAFYSP 302 (361)
T ss_dssp HHHHHHTTTCCSSCCCHHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECC
T ss_pred hccccccccccCCCCCchhhhHHHHHHHHHH-HhcchhhhHHHHHHHHHHHHHHHhhc-CCcccCChhhcCCcEEEEECC
Confidence 111223345677777777666665311 12234455556666777777777766 54433221 2333456666
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee-c-CHHHHHHHHHHHHHHH
Q 012095 398 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA-A-SLTTLQAAVERIKKGL 462 (471)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~-~-~~e~i~~~~~~l~~~l 462 (471)
+..+ .+..++.+.|.++ ||.+.+|.. ..++++||++. . +++||+++++.|+++|
T Consensus 303 ~~~~---------~~~~~~~~~l~~~-gi~i~~G~~-~~~~~~Ris~~g~~~~~di~~lv~al~~~L 358 (361)
T d1m32a_ 303 EDPQ---------YRFSEFYRRLKEQ-GFVIYPGKV-SQSDCFRIGNIGEVYAADITALLTAIRTAM 358 (361)
T ss_dssp CCTT---------CCHHHHHHHHHHT-TEECEECCC-SSSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred CCCC---------CCHHHHHHHHHHC-CcEEECCCc-CCCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 4321 2678888887765 999988853 34678999954 3 8899999999999875
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.78 E-value=3e-17 Score=162.76 Aligned_cols=343 Identities=15% Similarity=0.084 Sum_probs=211.2
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.+||+..|. ..++- +|.+.+|+.+++.+.. |..........+.+++.+....+ .+.+.++++++++..
T Consensus 37 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~sgs~a~~ 110 (404)
T d1z7da1 37 NDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLT--ICSRAFFSVPLGICERYLTNLLG----YDKVLMMNTGAEANE 110 (404)
T ss_dssp TCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCS--CCCTTSEEHHHHHHHHHHHHHHT----CSEEEEESSHHHHHH
T ss_pred CCCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCC--CcccccchHHHHHHHHhhhhccc----cceeeeeccccchHH
Confidence 688899998875 34543 7889999999886532 22222223344455555555444 467889999999999
Q ss_pred HHHHHhc---------C-CCCeEEEcCCCCCChHHHHHHcCCEE----EEecCCCCC--CCcCCHHHHHhhhccCCcEEE
Q 012095 170 QAVLAVC---------S-PGDEVIIPAPFWVSYPEMARIADATP----VILPTRISE--NFLLDPKVLESKLTEKSRLLI 233 (471)
Q Consensus 170 ~~~~~l~---------~-~gd~Vlv~~p~y~~~~~~~~~~G~~~----~~v~~~~~~--~~~ld~e~l~~~l~~~~~~i~ 233 (471)
.+++... . ....++....+|.............. ...|..... .-.-+.+.++..+.+..-+.+
T Consensus 111 ~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAav 190 (404)
T d1z7da1 111 TAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDPNVCAF 190 (404)
T ss_dssp HHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTTCHHHHHHHHTSTTEEEE
T ss_pred HHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCccccccccchHHHHHHHhcCCCEEEE
Confidence 8877642 1 12457777777776543322221110 011110000 001266777777755433444
Q ss_pred EcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccc-hh
Q 012095 234 LCSP-SNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WR 310 (471)
Q Consensus 234 i~~p-~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~R 310 (471)
|..| +...|. ..+++.+++|.++|++| |+++|.||++..+.-.|. ...+....-..| +-+++|.++ .| ..
T Consensus 191 i~EPi~g~~G~~~~~~~fl~~l~~lc~~~-g~llI~DEV~tGfgRtG~-~~~~e~~gv~PD----ivt~gK~l~-gG~~p 263 (404)
T d1z7da1 191 IVEPIQGEAGVIVPSDNYLQGVYDICKKY-NVLFVADEVQTGLGRTGK-LLCVHHYNVKPD----VILLGKALS-GGHYP 263 (404)
T ss_dssp EECSSBSTTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSS-SSGGGGGTCCCS----EEEECGGGG-TTSSC
T ss_pred EEEEEcCCCCCccCCHHHHHHHHHHHHHc-CCEEEEEcCccCCCcccc-cccccccCCCCC----EEEEccccc-CCCCC
Confidence 4455 555665 56788899999999999 999999999987633222 112222221112 336899998 55 78
Q ss_pred heeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcce
Q 012095 311 LGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAF 390 (471)
Q Consensus 311 ~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~ 390 (471)
+|.+++++++.+.+.......+++.++++..++.+.|+.-. .+...+...+.-+..++.+.+.+++.+.+.-+...|.|
T Consensus 264 ~~~v~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~vrg~Gl~ 342 (404)
T d1z7da1 264 ISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLI-NEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLL 342 (404)
T ss_dssp CEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTE
T ss_pred cccccchHHHHccCCCCCcCcCCCCCcchhhhhhhhhhhhh-cchhhhhhccchhHHHHHHHHHHhcCCCeEEEEeeCcE
Confidence 99999999999887766556677889999999999887411 12334444444455555666667666444333334444
Q ss_pred EEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHHHHHHHhh
Q 012095 391 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~~ 465 (471)
+.+.+.+.. ....++..+|+++ ||++.|.. ++.||++.. .++++|++++++|+++++++
T Consensus 343 -~~i~~~~~~----------~~~~~~~~~l~~~-Gl~~~~~~----~~~ir~~Ppl~it~~~id~~~~~l~~alk~~ 403 (404)
T d1z7da1 343 -CAIEFKNEL----------VNVLDICLKLKEN-GLITRDVH----DKTIRLTPPLCITKEQLDECTEIIVKTVKFF 403 (404)
T ss_dssp -EEEEECTTT----------CCHHHHHHHHHHT-TEECCEET----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -EEEEEcCCc----------ccHHHHHHHHHhC-CeEEecCC----CCEEEEECCcCCCHHHHHHHHHHHHHHHHhh
Confidence 455665321 2466788888876 99986632 467899755 49999999999999999876
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=1.9e-16 Score=154.55 Aligned_cols=202 Identities=11% Similarity=0.105 Sum_probs=158.8
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCc
Q 012095 155 PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRISENFLLDPKVLESKLTEKSR 230 (471)
Q Consensus 155 ~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~ 230 (471)
.+..++++++..|+..++.+++++||.|++.+..|.+....+ ...|.++..+.. .|.+.++++++++++
T Consensus 73 ~~~a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~-------~d~~~~~~~i~~~t~ 145 (391)
T d1cl1a_ 73 GAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDP-------LIGADIVKHLQPNTK 145 (391)
T ss_dssp CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECT-------TCGGGGGGTCCTTEE
T ss_pred CccEEEeccccceeeehhhcccCCCCeEEEecccccchhhhhhhcccccccccccccC-------ccccccccccccccc
Confidence 468899999999999999999999999999999998877654 456888888763 378899999999999
Q ss_pred EEEEcCCCCCcccCCCHHHHHHHHHHHHh--CCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccC-cc
Q 012095 231 LLILCSPSNPTGSVYPKNLLDEIARIVAK--HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA-MT 307 (471)
Q Consensus 231 ~i~i~~p~NPtG~~~~~~~l~~i~~l~~~--~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~ 307 (471)
+|++.+|.||+..+.+ +++|+++|++ + ++++++|+.+.--.+ ..+ .. .+-.|++.|.+|.++ -.
T Consensus 146 ~i~~EtpsNP~l~v~D---i~~i~~~a~~~~~-g~~~vVDnT~atP~~----~~P-l~----~GaDivvhS~TKy~~Ghs 212 (391)
T d1cl1a_ 146 IVFLESPGSITMEVHD---VPAIVAAVRSVVP-DAIIMIDNTWAAGVL----FKA-LD----FGIDVSIQAATKYLVGHS 212 (391)
T ss_dssp EEEEESSCTTTCCCCC---HHHHHHHHHHHCT-TCEEEEECTTTTTTS----SCG-GG----GTCSEEEEETTTTTTCSS
T ss_pred eeeecccCcccccccc---cHHHHHHHHhccC-CcEEEEeccccchhh----hcc-cc----cccceEEeecchhccccc
Confidence 9999999999999999 8888888855 5 899999999964211 111 12 234599999999994 22
Q ss_pred chhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCee
Q 012095 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 383 (471)
Q Consensus 308 G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~ 383 (471)
..=.|.+++++++.+.+.........++++.....+..-|+. +..+.++..++...+.+.|++.|.+..
T Consensus 213 dvlgG~vv~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgl~T-------L~lR~~~~~~nA~~vA~~L~~hp~V~~ 281 (391)
T d1cl1a_ 213 DAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRT-------LGVRLRQHHESSLKVAEWLAEHPQVAR 281 (391)
T ss_dssp SCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred cccccceeccccccccchhhhhcccccCCchhhhhhhccchh-------HHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 234578888888888888887777888888877666665554 555666677788888899988876643
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.78 E-value=1.3e-17 Score=163.90 Aligned_cols=320 Identities=15% Similarity=0.147 Sum_probs=213.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCC
Q 012095 109 TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPF 188 (471)
Q Consensus 109 ~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~ 188 (471)
.|+.|++|+... ..++++. -..++.+.+.+.+++.+|.+ +...|+++.|++++++.++..++.+|+.+++..-.
T Consensus 29 v~~~Vl~am~~~---~~~hr~~--ef~~i~~~~r~~l~~ll~~~-~~~~i~~~g~gT~~~~~~~~~~~~~~~~~~~~~~~ 102 (377)
T d1vjoa_ 29 AHPSVLQAMNVS---PVGHLDP--AFLALMDEIQSLLRYVWQTE-NPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAG 102 (377)
T ss_dssp CCHHHHHHHSSC---CCCTTSH--HHHHHHHHHHHHHHHHHTCC-CSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESS
T ss_pred CCHHHHHHhCcC---CCCCCCH--HHHHHHHHHHHHHHHHhCCC-CCeEEEEcCcHHHHHHHHHHhccccccccceeeec
Confidence 467787766421 2334432 33556666667777777753 44578888889999999999999999998887766
Q ss_pred CCChH--HHHHHcCCEEEEecCCCCCCCcCCHHHHHhh-hccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEE
Q 012095 189 WVSYP--EMARIADATPVILPTRISENFLLDPKVLESK-LTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 265 (471)
Q Consensus 189 y~~~~--~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~-l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~i 265 (471)
+.... ......+.....+....... .+.+..+.. .+++++++.+++-+|.||...+ +++|.++|+++ +.++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~---i~~i~~~~~~~-g~~~ 176 (377)
T d1vjoa_ 103 YFGNRLVDMAGRYGADVRTISKPWGEV--FSLEELRTALETHRPAILALVHAETSTGARQP---LEGVGELCREF-GTLL 176 (377)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCTTCC--CCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHH-TCEE
T ss_pred hhhhhhhhhhhhhcccccccccCCCCc--ccchhhhhhhhcCcceeeeeeeeeccceeeec---hhhhhhhhhhc-cceE
Confidence 54432 34556677766666543332 455555444 4568898889888999999999 99999999999 8999
Q ss_pred EEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHH-----------------
Q 012095 266 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ----------------- 328 (471)
Q Consensus 266 i~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~----------------- 328 (471)
++|.++.... .... ++. .+..+++.|..|.++ ++-.+|+++..+..++......
T Consensus 177 ~vDa~~~~g~----~~~~---~~~-~~~d~~~~s~~K~~~-gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (377)
T d1vjoa_ 177 LVDTVTSLGG----VPIF---LDA-WGVDLAYSCSQKGLG-CSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYW 247 (377)
T ss_dssp EEECTTTTTT----SCCC---TTT-TTCSEEECCSSSTTC-SCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHH
T ss_pred EEecchhhhh----hhhc---ccc-cccceeeeccccccc-CCCEEEEecchhhHHhhhhccCCCCcceeeccchhhhcc
Confidence 9999997521 1112 221 345578888899875 3335777888887777543211
Q ss_pred --hc-ccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC---cceEEeEecCCccCC
Q 012095 329 --SQ-FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ---GAFYLFIDFSTYYGS 402 (471)
Q Consensus 329 --~~-~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~---~g~~~~~~~~~~~~~ 402 (471)
.. ....++.....++..++... .....+...++.+++.+++.+.+.+. |.....+. ....+.+.+|+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~g~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~rs~~v~~~~~p~~~-- 322 (377)
T d1vjoa_ 248 GSERVYHHTAPINLYYALREALRLI--AQEGLANCWQRHQKNVEYLWERLEDI-GLSLHVEKEYRLPTLTTVCIPDGV-- 322 (377)
T ss_dssp STTCCCCSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCTTC--
T ss_pred CcccccccccceechhhhHHHHhhh--hhcCchHHHHHHHHHhhhhhhhhhcc-CceeecChHhcCCeEEEEECCCCC--
Confidence 11 11122332222232332210 12335677778888888888888776 44433221 2333556676542
Q ss_pred cccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe-ec--CHHHHHHHHHHHHHHHH
Q 012095 403 EAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY-AA--SLTTLQAAVERIKKGLL 463 (471)
Q Consensus 403 ~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~-~~--~~e~i~~~~~~l~~~l~ 463 (471)
+..+++.+|++++||.+..|.....++.||+|. +. ++|+++++++.|+++++
T Consensus 323 ---------~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 323 ---------DGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp ---------CHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred ---------CHHHHHHHHHhcCCEEEecCcccccCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence 788999999888899999987665667899994 53 78999999999999874
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.78 E-value=6.6e-18 Score=170.04 Aligned_cols=313 Identities=18% Similarity=0.176 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcEEEeCChHH-HHHHHHHHh---cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCCC
Q 012095 135 LELRSAICHKLKEENGLSYTPDQILVSNGAKQ-SILQAVLAV---CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI 210 (471)
Q Consensus 135 ~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~-al~~~~~~l---~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~ 210 (471)
.++...+.+++.+.+|.+. ....++|+|+++ ++.+++.++ ..+++.|+++...|.++...+..+|++++.|....
T Consensus 93 ~~le~~~~~~~~~l~g~~~-~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~~ 171 (445)
T d3bc8a1 93 NKITNSLVLNVIKLAGVHS-VASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVL 171 (445)
T ss_dssp HHHHHHHHHHHHHHHTCTT-CCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEE
T ss_pred HHHHHHHHHHHHHHhCCCc-ccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCeeEEEEeec
Confidence 4677778888888888653 345566666554 444444443 35679999999999999999999999999987543
Q ss_pred -CCCCcCCHHHHHhhhcc----CCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccC-CCCcccc
Q 012095 211 -SENFLLDPKVLESKLTE----KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA-PATHTSF 284 (471)
Q Consensus 211 -~~~~~ld~e~l~~~l~~----~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~-~~~~~~~ 284 (471)
++.+.+|+++|++++++ ++.+|++++|+|++|.+.+ +++|+++|++| ++++++|++|+..... .......
T Consensus 172 ~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~---~~~i~~~~~~~-~~~l~vD~a~~~~~~~~~~~~~~~ 247 (445)
T d3bc8a1 172 EGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR---LEELAVICANY-DIPHVVNNAYGLQSSKCMHLIQQG 247 (445)
T ss_dssp ETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC---HHHHHHHHHHH-TCCEEEECTTTTTCHHHHHHHHHH
T ss_pred cCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehh---HHHHHHHHHHh-CCcEEEEccchhhhhhccccchhc
Confidence 34688999999998853 5778888999999999999 99999999999 9999999999853311 1100111
Q ss_pred ccCCCCCCceEEEecCCcccCccchhheeeEc-CHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHH
Q 012095 285 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (471)
Q Consensus 285 ~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~-~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~ 363 (471)
..+ .+-.++..|.+|.++.|. -.|+++. +..+++.+.........+.+...+.+....+. ........+.
T Consensus 248 ~~~---~~vd~~~~s~hK~~~~p~-g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~~~ 318 (445)
T d3bc8a1 248 ARV---GRIDAFVQSLDKNFMVPV-GGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLG-----CSGYRKLLKE 318 (445)
T ss_dssp HHH---SCCCEEEEEHHHHHSCCS-SCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred cCc---CCcceEEecCccccccCC-CCceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHHh-----hhcchhhHHH
Confidence 111 122377888899886443 3566655 56677766654443333333444444333332 2334444444
Q ss_pred HHHHHHHHHHHhcCCC---CCeee-CCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEE----CCC---
Q 012095 364 FRERRDFLVKSFGELE---GVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV----PGD--- 432 (471)
Q Consensus 364 ~~~~r~~l~~~L~~~~---g~~~~-~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~----pg~--- 432 (471)
..++.+++.+.|.++. |..+. .+......++.+...... ...+..++...|.+. ||... ++.
T Consensus 319 ~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~------~~~~~~~l~~~L~~~-gI~~~~~~~~~~~~~ 391 (445)
T d3bc8a1 319 RKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGH------HDKAVTQLGSMLFTR-QVSGARAVPLGNVQT 391 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSS------SSCHHHHHHHHHHHT-TCCSCEEECSCCEEE
T ss_pred HHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeecccc------CCCCHHHHHHHHHHc-CCCcceeeccccccc
Confidence 4555555555554421 33332 233344444444322110 012455677776655 65211 111
Q ss_pred -------CCCC------CCcEEEEeec--CHHHHHHHHHHHHHHHHhhCCC
Q 012095 433 -------AFGD------DTCIRISYAA--SLTTLQAAVERIKKGLLTLRPG 468 (471)
Q Consensus 433 -------~f~~------~~~iRis~~~--~~e~i~~~~~~l~~~l~~~~~~ 468 (471)
.|+. ..++|++++. +++||+.++++|++++++++.+
T Consensus 392 i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~rk~ 442 (445)
T d3bc8a1 392 VSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKE 442 (445)
T ss_dssp ETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 1111 2468988875 8899999999999999987643
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.77 E-value=3.1e-17 Score=161.88 Aligned_cols=323 Identities=15% Similarity=0.143 Sum_probs=210.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCC
Q 012095 109 TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPF 188 (471)
Q Consensus 109 ~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~ 188 (471)
.++.|++|+.+. ..++++. -..++.+.+.+.+++.+|.+ +.+.|+++.|+|.+++.++..++.+|+.|++..-.
T Consensus 28 ~~~~V~~Am~~~---~~~hr~~--ef~~i~~~~r~~L~~ll~~~-~~~~i~~~gsgT~a~ea~~~~l~~~~~~vl~~~~g 101 (388)
T d2ch1a1 28 CSKRVLTAMTNT---VLSNFHA--ELFRTMDEVKDGLRYIFQTE-NRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNG 101 (388)
T ss_dssp CCHHHHHHTTSC---CCCTTCH--HHHHHHHHHHHHHHHHHTCC-CSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESS
T ss_pred CCHHHHHHhCcC---CCCCCCH--HHHHHHHHHHHHHHHHhCCC-CCeEEEEcCcHHHHHHHHHHHhccccccccccccc
Confidence 367787775432 1234432 23456666666677777753 33456677789999999999999999999887665
Q ss_pred CCChH--HHHHHcCCEEEEecCCCCCCCcCCHHHHHhhh-ccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEE
Q 012095 189 WVSYP--EMARIADATPVILPTRISENFLLDPKVLESKL-TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 265 (471)
Q Consensus 189 y~~~~--~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l-~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~i 265 (471)
+.+.. ..+...+...+.+...... ..+.+.+++.. ..+++++++++-+|.||...+ +++|.++|+++ +.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~---~~~i~~~~~~~-~~~~ 175 (388)
T d2ch1a1 102 IWAERAVEMSERYGADVRTIEGPPDR--PFSLETLARAIELHQPKCLFLTHGDSSSGLLQP---LEGVGQICHQH-DCLL 175 (388)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCTTS--CCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHT-TCEE
T ss_pred cccccchhhhhhhccccccccccccc--ccchhhhhhhhccCCcceeeeeecccccccccc---hhhhcchhccc-ccee
Confidence 54443 4466778888888776543 36777666665 468899999999999999999 88889999999 9999
Q ss_pred EEccCCCccccCCCCccccccCCCCCCceEEEecCCcccC-ccchhheeeEcCHHHHHHHHHHH----------------
Q 012095 266 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACNKIQ---------------- 328 (471)
Q Consensus 266 i~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~R~G~v~~~~~~i~~l~~~~---------------- 328 (471)
++|.+.... .... .+. .++..+++.|-.|.++ .+| +|+++.++..++.+....
T Consensus 176 ~vD~~ss~g----~~pi---d~~-~~~~d~~~~s~~K~~~gp~G--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (388)
T d2ch1a1 176 IVDAVASLC----GVPF---YMD-KWEIDAVYTGAQKVLGAPPG--ITPISISPKALDVIRNRRTKSKVFYWDLLLLGNY 245 (388)
T ss_dssp EEECTTTBT----TBCC---CTT-TTTCCEEECCCC-CCCCCSS--CEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHH
T ss_pred eeeeeeccc----cccc---chh-ccCceEEEEccccccCCCCe--EEEEeccHHHHHhhhcccCccccccccchhhhhh
Confidence 999998753 1111 122 2455578888889884 334 788888888777553210
Q ss_pred -------hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC----CcceEEeEecC
Q 012095 329 -------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP----QGAFYLFIDFS 397 (471)
Q Consensus 329 -------~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p----~~g~~~~~~~~ 397 (471)
..+...++.....++..++... ..........+.+.........+... ++....+ .+...+.+.+|
T Consensus 246 ~~~~~~~~~~~~t~~~~~i~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~rs~~v~~~~~p 322 (388)
T d2ch1a1 246 WGCYDEPKRYHHTVASNLIFALREALAQI--AEEGLENQIKRRIECAQILYEGLGKM-GLDIFVKDPRHRLPTVTGIMIP 322 (388)
T ss_dssp TTCSSSCCCCCCCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGBCTTEEEEECC
T ss_pred hcccccccccCccchHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHhhhhhc-ccccccCCHHHhCCeEEEEECC
Confidence 0122234444444444444420 01122333333333333344444332 2222111 12334667787
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEE-eec--CHHHHHHHHHHHHHHHHhhCC
Q 012095 398 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS-YAA--SLTTLQAAVERIKKGLLTLRP 467 (471)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis-~~~--~~e~i~~~~~~l~~~l~~~~~ 467 (471)
+.+ +..++...|++++||.+.+|......+.|||+ ++. ++|+|+.+++.|+++|+...+
T Consensus 323 ~g~-----------~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~~~~ 384 (388)
T d2ch1a1 323 KGV-----------DWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATHP 384 (388)
T ss_dssp TTC-----------CHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCC-----------CHHHHHHHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHhhCC
Confidence 542 78899999988889999998765556789999 554 789999999999999987553
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.76 E-value=5.2e-16 Score=151.51 Aligned_cols=214 Identities=14% Similarity=0.174 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH----HHHHcCCEEEEecCCC
Q 012095 135 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVILPTRI 210 (471)
Q Consensus 135 ~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~G~~~~~v~~~~ 210 (471)
..|.+.|++. .| .+..++++++..|+..++.+++++||.|++.+..|.+... .+...|.++.+++..
T Consensus 62 ~~le~~la~L----Eg----~~~a~~~sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~- 132 (394)
T d1e5ea_ 62 SNLEGKIAFL----EK----TEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA- 132 (394)
T ss_dssp HHHHHHHHHH----HT----CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-
T ss_pred HHHHHHHHHH----hC----CcceeeeccchHHHHHHHHhhcccccccccccceeehhhHhHHHHhhccceeeeccCCC-
Confidence 3455555544 33 4578888999999999999999999999999999976553 356789999988752
Q ss_pred CCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCC
Q 012095 211 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 290 (471)
Q Consensus 211 ~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~ 290 (471)
|++++++++++++++||+.+|.||+..+.+ ++++++.++++.++++|+|+.+..-. . .....
T Consensus 133 ------d~~~~~~~i~~~t~lv~~Etp~NP~l~v~D---i~~~~~~~~~~~g~~vvvDnT~atP~----~-~~Pl~---- 194 (394)
T d1e5ea_ 133 ------IPGEVKKHMKPNTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPM----I-TNPVD---- 194 (394)
T ss_dssp ------STTHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTT----T-CCGGG----
T ss_pred ------CHHHHHHhhcccccEEEEeccCCcceeeeh---hhhhhhccccccCeEEEecCcccCcc----c-CCchh----
Confidence 778999999999999999999999999999 88888877653389999999986411 1 11112
Q ss_pred CCceEEEecCCcccC-ccchhheeeEcCHHHHHHHHHH--HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Q 012095 291 WERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACNKI--QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367 (471)
Q Consensus 291 ~~~~i~~~S~SK~~g-~~G~R~G~v~~~~~~i~~l~~~--~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~ 367 (471)
.+-.|++.|.+|.++ -..+-.|.++++.+.+...+.. +.....+++++..+.+..-|+. +..+.++..++
T Consensus 195 ~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~T-------L~lRm~r~~~n 267 (394)
T d1e5ea_ 195 FGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLST-------LNIRMKAESEN 267 (394)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTT-------HHHHHHHHHHH
T ss_pred cCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCCChHHHHHHHhhchh-------HHHHHHHHHHH
Confidence 234599999999984 2334457788888887765432 3345666788877666666654 56667777888
Q ss_pred HHHHHHHhcCCCCCe
Q 012095 368 RDFLVKSFGELEGVK 382 (471)
Q Consensus 368 r~~l~~~L~~~~g~~ 382 (471)
...+.+.|++.|.++
T Consensus 268 A~~lA~~L~~hp~V~ 282 (394)
T d1e5ea_ 268 AMKVAEYLKSHPAVE 282 (394)
T ss_dssp HHHHHHHHHTCTTEE
T ss_pred HHHHHHHHhhcCCcc
Confidence 888999999987764
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.75 E-value=1.1e-16 Score=155.29 Aligned_cols=317 Identities=15% Similarity=0.093 Sum_probs=212.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCC
Q 012095 108 DTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187 (471)
Q Consensus 108 ~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p 187 (471)
+.|+.|++|+.+. ...+++ .-..++.+.+.+.+++.++. +.+.++++.|++.++..++..++.+||.|++..-
T Consensus 10 ~v~~~V~~am~~~---~~~hr~--~~f~~i~~~~~~~l~~ll~~--~~~~i~~~gsgT~a~e~~~~nl~~~g~~vlv~~~ 82 (348)
T d1iuga_ 10 RLHPKALEALARP---QLHHRT--EAAREVFLKARGLLREAFRT--EGEVLILTGSGTLAMEALVKNLFAPGERVLVPVY 82 (348)
T ss_dssp CCCHHHHHHHHSC---CCCTTS--HHHHHHHHHHHHHHHHHHTC--SSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CCCHHHHHHhcCC---CCCCCC--HHHHHHHHHHHHHHHHHhCC--CCCEEEEeCchHHHHHHHHHhcccccccceeecc
Confidence 4478888876542 122232 22345555666666666773 4567888999999999999999999998887766
Q ss_pred CCCC--hHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhC-CCeE
Q 012095 188 FWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH-PRLL 264 (471)
Q Consensus 188 ~y~~--~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~-~~~~ 264 (471)
.+.+ +...++.+|.++..+..+... .++++. ...++++.+++++..+.||...+ +++|.++|++| ++.+
T Consensus 83 G~f~~~~~~~a~~~~~~~~~~~~~~g~--~~~~~~---~~~~~~~~v~~~h~eTstG~~~~---i~~i~~~~~~~~~~~l 154 (348)
T d1iuga_ 83 GKFSERFYEIALEAGLVVERLDYPYGD--TPRPED---VAKEGYAGLLLVHSETSTGALAD---LPALARAFKEKNPEGL 154 (348)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCTTC--CCCTTT---SCCSSCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTCE
T ss_pred hHHHHHHHHHHHhcCcccccccccCCC--cccccc---ccccCCCeeEEEecchhhhhhcc---HHHHHHHHHhhhccce
Confidence 5433 335678889888888765432 234333 33567889999999999999999 88888888775 2578
Q ss_pred EEEccCCCccccCCCCccccccCCCCCCceEEEecCCccc-CccchhheeeEcCHHHHHHHH---------HH-----Hh
Q 012095 265 VLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAGPKHFVAACN---------KI-----QS 329 (471)
Q Consensus 265 ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~R~G~v~~~~~~i~~l~---------~~-----~~ 329 (471)
+++|.+.+... .... ++. ++-.+++.|-.|.+ |.+| +|+++.+++.++++. .. ..
T Consensus 155 ~~vDavss~g~----~~i~---~d~-~~iD~~~~~sqK~l~gppG--~~~v~~s~~~le~~~~~~~~~dl~~~~~~~~~~ 224 (348)
T d1iuga_ 155 VGADMVTSLLV----GEVA---LEA-MGVDAAASGSQKGLMCPPG--LGFVALSPRALERLKPRGYYLDLARELKAQKEG 224 (348)
T ss_dssp EEEECTTTBTT----BCCC---SGG-GTCSEEEEESSSTTCCCSC--EEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTT
T ss_pred eechhhhcccc----cccc---ccc-ccCCEEEeccccceecCCc--eeeeeechHHHhhhcccccccchhhhhhhhccC
Confidence 88998877522 1111 111 23458888999999 7777 799999988777531 11 12
Q ss_pred cccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC-cceEEeEecCCccCCcccCCC
Q 012095 330 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-GAFYLFIDFSTYYGSEAEGFG 408 (471)
Q Consensus 330 ~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~-~g~~~~~~~~~~~~~~~~~~~ 408 (471)
.+.++++....+++.++|+... .. ..+..+..+..+..+.+.+... |+...+.. ..-.+.+.+|+.+
T Consensus 225 ~~~~Tp~v~~i~~l~~aL~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~-gl~~~~~~~s~~v~~~~~P~g~-------- 292 (348)
T d1iuga_ 225 ESAWTPAINLVLAVAAVLEEVL--PR-LEEHLALKAWQNALLYGVGEEG-GLRPVPKRFSPAVAAFYLPEGV-------- 292 (348)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHG--GG-HHHHHHHHHHHHHHHHHHHHHT-TCEESCSSBCTTCEEEECCTTC--------
T ss_pred cccccccchHHHHHHHHHHHHH--HH-HhHHHHHHHHHHHHHhhhhhhh-hhccChhhcCCeEEEEECCCCC--------
Confidence 2344577777777788886421 22 3333344444455555555444 77654322 1122567777643
Q ss_pred CCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012095 409 KIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 409 ~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~ 465 (471)
+..++.+.|. ++||.+.+|..--....|||+... +.++++.+++.|+++++++
T Consensus 293 ---~~~~~~~~l~-~~gi~i~~G~~~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~~ 347 (348)
T d1iuga_ 293 ---PYARVKEAFA-QRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 347 (348)
T ss_dssp ---CHHHHHHHHH-TTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHH-HCCeEEEcCccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 7788888765 569999988644345689998653 8899999999999999875
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.75 E-value=1.2e-16 Score=152.85 Aligned_cols=212 Identities=16% Similarity=0.167 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH----HHHcCCEEEEecCCCC
Q 012095 136 ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTRIS 211 (471)
Q Consensus 136 ~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~G~~~~~v~~~~~ 211 (471)
.|.+.++++. ..+..++++++..|+..++.+++++||.|++++..|.+.... ++..|.++.+++..
T Consensus 2 aLE~~la~Le--------g~~~a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~-- 71 (331)
T d1pffa_ 2 ALEGKIAKLE--------HAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA-- 71 (331)
T ss_dssp HHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT--
T ss_pred HHHHHHHHHh--------CCCeEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEeccc--
Confidence 4666677664 346788999999999999999999999999999999776543 56789999888752
Q ss_pred CCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHH-HhCCCeEEEEccCCCccccCCCCccccccCCCC
Q 012095 212 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV-AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 290 (471)
Q Consensus 212 ~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~-~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~ 290 (471)
|++.+++++++++++|++.+|.||+..+.+ ++++++++ +++ ++++|+|+.+..... +..+ .
T Consensus 72 -----d~~~~~~~i~~~t~~i~~Es~~np~~~v~d---~~~~~~~~a~~~-~~~~vVDnT~atp~~-------~~pl--~ 133 (331)
T d1pffa_ 72 -----VPGNIEKHLKPNTRIVYFETPANPTLKVID---IEDAVKQARKQK-DILVIVDNTFASPIL-------TNPL--D 133 (331)
T ss_dssp -----STTHHHHTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSS-SCEEEEECTTTHHHH-------CCGG--G
T ss_pred -----chhhHhhhcccccceeeeeccccccccccc---chhhhhhhhccc-CceEEeecccccccc-------cccc--c
Confidence 889999999999999999999999999999 77778775 557 899999999974211 1111 1
Q ss_pred CCceEEEecCCcccC-ccchhheeeEcCHHHHHHHHHH--HhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Q 012095 291 WERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACNKI--QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367 (471)
Q Consensus 291 ~~~~i~~~S~SK~~g-~~G~R~G~v~~~~~~i~~l~~~--~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~ 367 (471)
.+-.|++.|.+|.++ -...=.|.++++++.+...... ......++++.....+..-|+. +..+.++..++
T Consensus 134 ~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T-------l~~Rm~~~~~n 206 (331)
T d1pffa_ 134 LGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLT-------LDMRVKRAAEN 206 (331)
T ss_dssp GTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred cCCCEEEecchhhcCCCCccccccccccccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 234499999999994 2334457888887766654432 3334666777776665555543 55666777778
Q ss_pred HHHHHHHhcCCCCCe
Q 012095 368 RDFLVKSFGELEGVK 382 (471)
Q Consensus 368 r~~l~~~L~~~~g~~ 382 (471)
...+.+.|++.|.++
T Consensus 207 A~~lA~~L~~hp~V~ 221 (331)
T d1pffa_ 207 AQKVAEFLHEHKAVK 221 (331)
T ss_dssp HHHHHHHHHHCTTCC
T ss_pred HHHHHHhhhhCCcEE
Confidence 888888888877653
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=2.1e-16 Score=155.48 Aligned_cols=322 Identities=12% Similarity=0.076 Sum_probs=207.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCC--CCCCcEEEeCChHHHHHHHHHHhc---CCCCeEE
Q 012095 109 TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLS--YTPDQILVSNGAKQSILQAVLAVC---SPGDEVI 183 (471)
Q Consensus 109 ~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~--~~~~~i~it~G~~~al~~~~~~l~---~~gd~Vl 183 (471)
.|+.|.+|+... ...++++ ...++.+.+.+.+.+.++.. .+++.|++|.|+|++++.++..++ +|||.|+
T Consensus 14 v~~~V~~Am~~~---~~~hr~~--~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vl 88 (382)
T d2bkwa1 14 LSGAVQKALDVP---SLGHTSP--EFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVL 88 (382)
T ss_dssp CCHHHHHTTSCC---CCCTTSH--HHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEE
T ss_pred CCHHHHHHhCcc---cCCCCcH--HHHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceE
Confidence 367777665321 1223322 12333444555555556532 245689999999999999999986 5799999
Q ss_pred EcCCCCCCh--HHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc-cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhC
Q 012095 184 IPAPFWVSY--PEMARIADATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 260 (471)
Q Consensus 184 v~~p~y~~~--~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~-~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~ 260 (471)
+..-.+.+. ...++..|.....+...+ .+...+.+.+++.+. .+++++++++.+|.||...+ ++++.+.|+++
T Consensus 89 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~---~~~~~~~~~~~ 164 (382)
T d2bkwa1 89 VVSTGTFSDRFADCLRSYGAQVDVVRPLK-IGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSD---LKAISQAIKQT 164 (382)
T ss_dssp EECSSHHHHHHHHHHHHTTCEEEEECCSS-TTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC---HHHHHHHHHHH
T ss_pred EEEechhhhhhhhhccccccccccccccC-CCCccchhHHHHHhhhccchheeeeecccccccccc---chhhhhhcccc
Confidence 987666543 345677888877665433 344578888887764 57899999999999999999 66667766654
Q ss_pred -CCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCccc-CccchhheeeEcCHHHHHHHHHHH----------
Q 012095 261 -PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAGPKHFVAACNKIQ---------- 328 (471)
Q Consensus 261 -~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~R~G~v~~~~~~i~~l~~~~---------- 328 (471)
.++++++|.+... |..+..+.. ++-.+++.|-.|.+ |.+| +|+++.++++++.+....
T Consensus 165 ~~~~~~~vDa~qs~----g~~pid~~~----~giD~~~~s~~K~l~gP~G--~g~l~vs~~~~~~~~~~~~~~~~~~~~~ 234 (382)
T d2bkwa1 165 SPETFFVVDAVCSI----GCEEFEFDE----WGVDFALTASQKAIGAPAG--LSISLCSSRFMDYALNDSKNGHVHGYFS 234 (382)
T ss_dssp CTTSEEEEECTTTT----TTSCCCTTT----TTCSEEEEESSSTTCCCSC--EEEEEECHHHHHHHTCHHHHCCCSCSTT
T ss_pred ccceeeeeeccccc----ccccccccc----cCeeEEeecccccCcCCCc--hhhhhccHHHHhhhhhcccCCCcccchh
Confidence 1599999999875 222222221 34558899999998 5566 899999998877653211
Q ss_pred ----------------hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC---CC--
Q 012095 329 ----------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE---PQ-- 387 (471)
Q Consensus 329 ----------------~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~---p~-- 387 (471)
..+..+++....+++..+|+.- ..+..+...++.++.++++++.+.+..++.... +.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~--~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~ 312 (382)
T d2bkwa1 235 SLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEI--LEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMS 312 (382)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTB
T ss_pred hhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHH--HHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhcc
Confidence 1223356666767777777641 123456666777788888888887754543322 11
Q ss_pred cceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC-CCCCcEEEE-eec--CHHHHHHHHHHHHHHHH
Q 012095 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF-GDDTCIRIS-YAA--SLTTLQAAVERIKKGLL 463 (471)
Q Consensus 388 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f-~~~~~iRis-~~~--~~e~i~~~~~~l~~~l~ 463 (471)
....+.+.++ +..++.+.| +++||.+..|..- -.++.|||+ ++. ++++++.+++.|..+..
T Consensus 313 s~~v~~~~~~--------------~~~~~~~~L-~~~gi~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~ 377 (382)
T d2bkwa1 313 AHGLTAVYVA--------------DPPDVIAFL-KSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKL 377 (382)
T ss_dssp CSSCEEEECS--------------CHHHHHHHH-HHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHH
T ss_pred CCcEEEEcCC--------------CHHHHHHHH-HHCCeEEECCCChhhcCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH
Confidence 1112334554 466777765 5569999988543 234689999 554 55666666666665544
Q ss_pred hhC
Q 012095 464 TLR 466 (471)
Q Consensus 464 ~~~ 466 (471)
.++
T Consensus 378 ~L~ 380 (382)
T d2bkwa1 378 ALQ 380 (382)
T ss_dssp HTT
T ss_pred HHC
Confidence 444
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=2.9e-16 Score=157.39 Aligned_cols=358 Identities=12% Similarity=0.027 Sum_probs=239.3
Q ss_pred hcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---cEEEeCChHHHH
Q 012095 92 QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD---QILVSNGAKQSI 168 (471)
Q Consensus 92 ~~g~~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~---~i~it~G~~~al 168 (471)
..|.+.++|......+. ++.+.+.+.+.+..+...+...+...++.+.+.+++.+.+|.+-..+ .=.+|+|+++++
T Consensus 50 ~dg~~~~n~asf~~t~~-~~~~~~l~~~~~~~N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~ 128 (450)
T d1pmma_ 50 LDGNARQNLATFCQTWD-DENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEAC 128 (450)
T ss_dssp GSCCGGGBCSCCSCCCC-CHHHHHHHHHTTTCBTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHH
T ss_pred cCCCccccccccccCCC-CHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHH
Confidence 35666677777665543 45677777777766555554455678999999999999999753221 248999999999
Q ss_pred HHHHHHhc-----------CCC-CeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcC
Q 012095 169 LQAVLAVC-----------SPG-DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCS 236 (471)
Q Consensus 169 ~~~~~~l~-----------~~g-d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~ 236 (471)
..++.+.. .++ ..+++....|.++..+++..|++++.||+++ +++.+|+++|++++++++.+|+.+.
T Consensus 129 ~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~gi~~~~v~~~~-~~~~~d~~~L~~~i~~~t~~Vv~t~ 207 (450)
T d1pmma_ 129 MLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRP-GQLFMDPKRMIEACDENTIGVVPTF 207 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHHHTTCEEEECCCBT-TBCSCCHHHHHHHCCTTEEEEECBB
T ss_pred HHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHHHHHcCCCceEeeecC-CCCcCcHHHHHHHhhhCceEEEeee
Confidence 88776642 122 3577888889899999999999999999875 4588999999999999999999999
Q ss_pred CCCCcccCCCHHHHHHHHH---HHHhCCCeEEEEccCCCccc--cCCCCccccccCCCCCCceEEEecCCcccCccchhh
Q 012095 237 PSNPTGSVYPKNLLDEIAR---IVAKHPRLLVLSDEIYEHII--YAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRL 311 (471)
Q Consensus 237 p~NPtG~~~~~~~l~~i~~---l~~~~~~~~ii~De~y~~~~--~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~ 311 (471)
++|.||.+-+.+++.+|++ +|+++ ++|+.+|.+|+.+. +..........+ ..-.-+..|..|.++ ....+
T Consensus 208 gtt~tG~~dpv~~i~~i~~~~~~a~~~-~i~lHVDAA~gG~~~p~~~~~~~~~~~~---~~aDSi~~s~HK~~~-~p~g~ 282 (450)
T d1pmma_ 208 GVTYTGNYEFPQPLHDALDKFQADTGI-DIDMHIDAASGGFLAPFVAPDIVWDFRL---PRVKSISASGHKFGL-APLGC 282 (450)
T ss_dssp SCTTTCBBCCHHHHHHHHHHHHHHHCC-CCCEEEECTTGGGTHHHHCTTCCCSTTS---TTEEEEEEETTTTTC-CCSSC
T ss_pred eeccCCCccccchhhHHHHHHHHHhcc-CcEEEeehhhccceeeeechhhhhhhcc---cceeEeecChhhccC-CCCCe
Confidence 9999999999776655544 36778 99999999998653 222111111112 234467778999875 44668
Q ss_pred eeeEcCHH-HHHHHHHH--------HhcccC--CCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 012095 312 GYIAGPKH-FVAACNKI--------QSQFTS--GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 380 (471)
Q Consensus 312 G~v~~~~~-~i~~l~~~--------~~~~~~--~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g 380 (471)
||++..+. ........ ....+. +-+..........+.. ...+.+++..++..+..+++.+.|++.++
T Consensus 283 g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~--~G~~G~~~~~~~~~~la~~l~~~L~~~~~ 360 (450)
T d1pmma_ 283 GWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLR--LGREGYTKVQNASYQVAAYLADEIAKLGP 360 (450)
T ss_dssp EEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred eEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99987543 22111000 000111 1122222222323321 12566888888999999999999999988
Q ss_pred CeeeCC---Ccc-eEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC----CCCCcEEEEeec--CHHH
Q 012095 381 VKMSEP---QGA-FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF----GDDTCIRISYAA--SLTT 450 (471)
Q Consensus 381 ~~~~~p---~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f----~~~~~iRis~~~--~~e~ 450 (471)
+++..+ ..+ ..+.+++.+.. ..+ .+..++.+.|.++ |..+.. ..+ .....+|+.+.. +.++
T Consensus 361 ~el~~~~~p~~~l~~V~Fr~~~~~---~~~----~~~~~l~~~L~~~-Gw~v~~-~~~p~~~~~~~~lRvvv~~~~t~e~ 431 (450)
T d1pmma_ 361 YEFICTGRPDEGIPAVCFKLKDGE---DPG----YTLYDLSERLRLR-GWQVPA-FTLGGEATDIVVMRIMCRRGFEMDF 431 (450)
T ss_dssp EEEEEECCTTTBSSEEEEEECTTC---CCS----SCHHHHHHHHHTT-TCBCCE-EECCTTCTTCEEEEEECCTTCCHHH
T ss_pred eEEEeCCCCCCceEEEEEecCCcc---cCC----CCHHHHHHHHHHc-CCeeec-cCcCCCcCCcEEEEEEccCCCCHHH
Confidence 877532 222 22444554211 011 2667888887765 754321 111 112469999986 8899
Q ss_pred HHHHHHHHHHHHHhhCC
Q 012095 451 LQAAVERIKKGLLTLRP 467 (471)
Q Consensus 451 i~~~~~~l~~~l~~~~~ 467 (471)
++++++.|++++++++.
T Consensus 432 ~d~lv~dl~~~v~~l~~ 448 (450)
T d1pmma_ 432 AELLLEDYKASLKYLSD 448 (450)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999988753
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=6.4e-16 Score=154.00 Aligned_cols=340 Identities=12% Similarity=0.057 Sum_probs=213.4
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+.+||+..|. ..++. ++.+.+|+.+++.+..+. ....-..+-...+++.+....+ ...+.+.++++++++..
T Consensus 41 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~f~~sGseA~e 117 (429)
T d1s0aa_ 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHV-MFGGITHAPAIELCRKLVAMTP--QPLECVFLADSGSVAVE 117 (429)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCC-CCSSEECHHHHHHHHHHHHHSC--TTCCEEEEESSHHHHHH
T ss_pred CCCEEEECcccHHHHhhcCCcHHHHHHHHHHHHhcCCc-ccCCccchHHHHHHHHHHhhhc--cCcceeeeccccccchh
Confidence 678899998886 44554 799999999988763211 1111122334444555544443 24468999999999999
Q ss_pred HHHHHhc-------CCCCeEEEcCCCCCChHHHHHHc-C-------------CEEEEecCCCC-CCC---cCCHHHHHhh
Q 012095 170 QAVLAVC-------SPGDEVIIPAPFWVSYPEMARIA-D-------------ATPVILPTRIS-ENF---LLDPKVLESK 224 (471)
Q Consensus 170 ~~~~~l~-------~~gd~Vlv~~p~y~~~~~~~~~~-G-------------~~~~~v~~~~~-~~~---~ld~e~l~~~ 224 (471)
.+++... .+...|+....+|.+....+... | ......|.... ... .-+++.+++.
T Consensus 118 ~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (429)
T d1s0aa_ 118 VAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARL 197 (429)
T ss_dssp HHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHH
T ss_pred hhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhhhhhh
Confidence 8887652 23357888888887654333222 1 11122222111 111 1244555554
Q ss_pred hc---cCCcEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCC-ccccccCCCCCCceEEEe
Q 012095 225 LT---EKSRLLILCSP-SNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT-HTSFASLPGMWERTLTVN 298 (471)
Q Consensus 225 l~---~~~~~i~i~~p-~NPtG~-~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~-~~~~~~~~~~~~~~i~~~ 298 (471)
+. ++..+|++.-. ++-.|. ..+++.+++|.++|++| |+++|.||++.++...|.. ......+.+ | +-
T Consensus 198 ~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~-gillI~DEV~tGfGRtG~~~~~~~~~v~P--D----i~ 270 (429)
T d1s0aa_ 198 MAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDRE-GILLIADEIATGFGRTGKLFACEHAEIAP--D----IL 270 (429)
T ss_dssp HHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSSGGGGGTCCC--S----EE
T ss_pred hhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHc-Ccceehhhccccccccccccccccceecc--c----cc
Confidence 43 23445544332 455554 67899999999999999 9999999999987333321 111122222 2 44
Q ss_pred cCCcccCccchhheeeEcCHHHHHHHHHHH-----hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHH
Q 012095 299 GFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-----SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 373 (471)
Q Consensus 299 S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~-----~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~ 373 (471)
+++|.++-.+..+|.+++.+++.+.+..-. ...+++.++++.+++.+.|+.-.. +++.+..++.-+++.+
T Consensus 271 ~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~-----~~~~~~~~~~g~~l~~ 345 (429)
T d1s0aa_ 271 CLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILES-----GDWQQQVADIEVQLRE 345 (429)
T ss_dssp EECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhhHHHHHhccCCCCCcceeecCCCCCCcccchhhhcccccccc-----ccccchhhHHHHHHHH
Confidence 478999734489999999999998875421 235777899999999998875211 2234444445555555
Q ss_pred HhcCC---CCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CH
Q 012095 374 SFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SL 448 (471)
Q Consensus 374 ~L~~~---~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~ 448 (471)
.|+++ +.+.-+...| +++-+++... .....+.+.|+++ ||++.|. .+.+|++... ++
T Consensus 346 ~L~~l~~~~~v~~vrg~G-l~~~~e~~~~-----------~~~~~~~~~~~~~-Gl~~~~~-----g~~i~~~Ppl~it~ 407 (429)
T d1s0aa_ 346 QLAPARDAEMVADVRVLG-AIGVVETTHP-----------VNMAALQKFFVEQ-GVWIRPF-----GKLIYLMPPYIILP 407 (429)
T ss_dssp HHGGGGGCTTEEEEEEET-TEEEEEESSC-----------BCHHHHHHHHHHT-TEECCCB-----TTEEEECCCTTCCH
T ss_pred HHHHhccCCceEEEeecc-cEEEEEecCc-----------ccHHHHHHHHHHC-CcEEEec-----CCEEEEeCCcCCCH
Confidence 55443 3333233333 4455666543 2567888888876 9998764 2589998554 99
Q ss_pred HHHHHHHHHHHHHHHhh
Q 012095 449 TTLQAAVERIKKGLLTL 465 (471)
Q Consensus 449 e~i~~~~~~l~~~l~~~ 465 (471)
++|++++++|++++++.
T Consensus 408 ~eid~~~~~l~~al~e~ 424 (429)
T d1s0aa_ 408 QQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp HHHHHHHHHHHHHTSSG
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999998764
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.74 E-value=1.4e-15 Score=149.14 Aligned_cols=214 Identities=14% Similarity=0.138 Sum_probs=154.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH----HHHcCCEEEEecCCC
Q 012095 135 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTRI 210 (471)
Q Consensus 135 ~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~G~~~~~v~~~~ 210 (471)
..|.+.|++. .| .+..++++++..|+..++.+++++||.|++++..|.+.... +...|.++.++...
T Consensus 61 ~~LE~~la~L----E~----~~~a~~~~SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~- 131 (421)
T d2ctza1 61 DVLEKRLAAL----EG----GKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSRE- 131 (421)
T ss_dssp HHHHHHHHHH----HT----CSEEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTT-
T ss_pred HHHHHHHHHH----hC----CCeEEEecChHHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhhccccceecccc-
Confidence 3455555554 33 46788999999999999999999999999999999877654 45789998887642
Q ss_pred CCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCC
Q 012095 211 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 290 (471)
Q Consensus 211 ~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~ 290 (471)
-+.+..++.+++++|+||+.+|.|||..+.+ +++|+++|+++ ++++|+|+.+.. .++..-+-.
T Consensus 132 -----~~~~~~~~~~~~~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~-g~~~vvDnT~a~--------tP~~~~Pl~ 194 (421)
T d2ctza1 132 -----ERPEEFLALTDEKTRAWWVESIGNPALNIPD---LEALAQAAREK-GVALIVDNTFGM--------GGYLLRPLA 194 (421)
T ss_dssp -----CCHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHH-TCEEEEECGGGG--------GGTSCCGGG
T ss_pred -----cCcchhccccCCCceEEEEcCCCcceeEecc---hHHHHHHHHhc-CCceEecccccc--------cceeccccc
Confidence 1456677778899999999999999999999 99999999999 999999999862 011111111
Q ss_pred CCceEEEecCCcccCccc-hhheeeEcCHH-------------------------------HHHH-HHHHHhcccCCCCh
Q 012095 291 WERTLTVNGFSKAFAMTG-WRLGYIAGPKH-------------------------------FVAA-CNKIQSQFTSGASS 337 (471)
Q Consensus 291 ~~~~i~~~S~SK~~g~~G-~R~G~v~~~~~-------------------------------~i~~-l~~~~~~~~~~~~~ 337 (471)
.+-.|++.|.+|.++=-| .=.|.++.+.+ ++.+ ........+.++++
T Consensus 195 ~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP 274 (421)
T d2ctza1 195 WGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGP 274 (421)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCH
T ss_pred cCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCH
Confidence 344599999999995223 33466664321 1111 11223345677888
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 012095 338 ISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 381 (471)
Q Consensus 338 ~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~ 381 (471)
+....+..-|+. +.-+.++..++...+.+.|++.|.+
T Consensus 275 ~~a~l~~rgl~T-------L~lRm~~~~~nA~~vA~~L~~hp~V 311 (421)
T d2ctza1 275 FEAWVVLLGMET-------LSLRAERHVENTLHLAHWLLEQPQV 311 (421)
T ss_dssp HHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred HHHHHHhcCCcc-------hhhHHHHHHHHHHHHHhhhccCCCe
Confidence 887766666654 5566677778888888999887765
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.74 E-value=6.7e-16 Score=148.44 Aligned_cols=335 Identities=16% Similarity=0.129 Sum_probs=224.7
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCC-CC------CCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGF-TR------YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~-~~------Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
+.|.|-..++-. ++.+.+++...+.+.. .+ |+...-..++.+...++..+.||. ..-||-..+| +.+.
T Consensus 24 ~~l~LiaSEN~~--S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a--~~anVqp~SG-s~An 98 (405)
T d1kl1a_ 24 AKIELIASENFV--SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGA--EHANVQPHSG-AQAN 98 (405)
T ss_dssp HSEECCTTCCCC--CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCC--SEEECCCSSH-HHHH
T ss_pred cCceEeccCCcC--CHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCC--CcceeeccCc-hHHH
Confidence 468888888764 5677777776665432 11 322223345555555777777874 2235544455 4556
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChHH-----HHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc-cCCcEEEEcCCCCCcc
Q 012095 169 LQAVLAVCSPGDEVIIPAPFWVSYPE-----MARIADATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTG 242 (471)
Q Consensus 169 ~~~~~~l~~~gd~Vlv~~p~y~~~~~-----~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~-~~~~~i~i~~p~NPtG 242 (471)
..++.+|++|||+|+..++...++.. .......+.+.++++++ ++.+|.|++++.+. .+||+|++-.-.+|
T Consensus 99 ~av~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~-~~~ID~d~l~~~a~~~kPklIi~G~S~y~-- 175 (405)
T d1kl1a_ 99 MAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPE-THVIDYDDVREKARLHRPKLIVAAASAYP-- 175 (405)
T ss_dssp HHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTT-TCSBCHHHHHHHHHHHCCSEEEECCSSCC--
T ss_pred HHHHHHhcCCCCEEEEeecccccccccCccccccceEEEEEEeccchh-cccccHHHHHHHHHhhCcceEEecccccc--
Confidence 66899999999999988866555432 23334578888898864 46899999999875 58998887444443
Q ss_pred cCCCHHHHHHHHHHHHhCCCeEEEEccCCCc-cccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHH
Q 012095 243 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 321 (471)
Q Consensus 243 ~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i 321 (471)
..++ ++++.++|++. +.+++.|-+|.. |+.++. .++.... -.++..|..|+| .|-|-|.+.+++++.
T Consensus 176 r~~d---~~~~reIad~v-ga~l~~D~aH~~GLIa~g~-~~~P~~~-----aDvvt~tThKtl--rGPrgg~I~~~~~~~ 243 (405)
T d1kl1a_ 176 RIID---FAKFREIADEV-GAYLMVDMAHIAGLVAAGL-HPNPVPY-----AHFVTTTTHKTL--RGPRGGMILCQEQFA 243 (405)
T ss_dssp SCCC---HHHHHHHHHHH-TCEEEEECTTTHHHHHTTS-SCCSTTT-----CSEEEEESSSTT--CCCSCEEEEECHHHH
T ss_pred cccC---hHHHHHHHhhh-CCEEecchhhHhhhhhhhh-cCChhhh-----hhheeccccccc--cCCCCceEEecchhH
Confidence 3456 88889999998 999999999874 333433 3333222 237788999997 688999999999999
Q ss_pred HHHHHHHhcccCCCChHHHHHHHH-HHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC-CcceEEeEecCCc
Q 012095 322 AACNKIQSQFTSGASSISQKAGVA-ALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QGAFYLFIDFSTY 399 (471)
Q Consensus 322 ~~l~~~~~~~~~~~~~~~q~aa~~-~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p-~~g~~~~~~~~~~ 399 (471)
+++.+...+...+.+.+.+.|+.+ +|.+. .....+...++..++.+.|.+.|.+. |+.+... ..+..+|+++...
T Consensus 244 ~~i~~avfPg~qggp~~~~iAa~Aval~Ea--~~~~fk~Ya~qvv~NAkaLa~~L~~~-G~~vv~ggTd~H~vlvdl~~~ 320 (405)
T d1kl1a_ 244 KQIDKAIFPGIQGGPLMHVIAAKAVAFGEA--LQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNHLLLVDLRPQ 320 (405)
T ss_dssp HHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGG
T ss_pred HHHHhhhCcccccCcchhHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHhcC-CceeecCCCccceeecccccc
Confidence 998887666555544444444333 33321 12345667777788888999999887 8888632 3356688888543
Q ss_pred cCCcccCCCCCCCHHHHHHHHHHcCCEEEE----CCCC--CCCCCcEEEEeec------CHHHHHHHHHHHHHHHHh
Q 012095 400 YGSEAEGFGKIENSESLCRYLLDKAQVALV----PGDA--FGDDTCIRISYAA------SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~----pg~~--f~~~~~iRis~~~------~~e~i~~~~~~l~~~l~~ 464 (471)
+ .+. ..++++|++.||.+. |+.. ...+..|||.... .++++++..+-|.++++.
T Consensus 321 -~---------~~g-~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~~ 386 (405)
T d1kl1a_ 321 -Q---------LTG-KTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKN 386 (405)
T ss_dssp -T---------CCH-HHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred -C---------CcH-HHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 1 133 445667788899887 3321 1124679998764 678999999999988854
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=2.1e-15 Score=145.63 Aligned_cols=335 Identities=14% Similarity=0.057 Sum_probs=222.9
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCC-CC------CCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGF-TR------YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~-~~------Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
+.|.|-..++-. ++.+.+++...+.+.. .+ |+..+-+.++.+...++..+.||. ...||-.. +++.|.
T Consensus 27 ~~i~LiaSEN~~--S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a--~~anVqp~-SGs~AN 101 (416)
T d1dfoa_ 27 EHIELIASENYT--SPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGA--DYANVQPH-SGSQAN 101 (416)
T ss_dssp HSEECCTTCCCC--CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC--SEEECCCS-SHHHHH
T ss_pred cCceEecCcccC--CHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCC--Ccceeecc-cCccHH
Confidence 468888888764 5677777776665432 12 222222345555555666777874 22344444 555566
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChHHH-----HHHcCCEEEEecCCCCCCCcCCHHHHHhhhc-cCCcEEEEcCCCCCcc
Q 012095 169 LQAVLAVCSPGDEVIIPAPFWVSYPEM-----ARIADATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTG 242 (471)
Q Consensus 169 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~-----~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~-~~~~~i~i~~p~NPtG 242 (471)
..++.++++|||+|+..+..+.++... +.....+.+.++++. + ..+|.|++++... .+||+|++..-.+ .
T Consensus 102 ~av~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~-~-~~IDyd~l~~~a~~~kPklIi~G~S~y--~ 177 (416)
T d1dfoa_ 102 FAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDA-T-GHIDYADLEKQAKEHKPKMIIGGFSAY--S 177 (416)
T ss_dssp HHHHHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCS-S-SSBCHHHHHHHHHHHCCSEEEEECSSC--C
T ss_pred HHHHHHhcCCCCeeeeccccccccccccccccccCceEEEEecccCC-c-cCccHHHHHHHHHHhccceEEeccccc--c
Confidence 778999999999999998877765432 233346778888764 3 3499999999774 5899988754333 3
Q ss_pred cCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcC---HH
Q 012095 243 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP---KH 319 (471)
Q Consensus 243 ~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~---~~ 319 (471)
..++ ++++.++|.+. +.+++.|.+|.-....+...++.... -.++..|..|+| .|-|-|.+.++ ++
T Consensus 178 r~~d---~~~~reiad~v-ga~l~~D~aH~~GLIa~g~~~sP~~~-----aDvvt~tThKtl--rGPrggiI~~~~~~~~ 246 (416)
T d1dfoa_ 178 GVVD---WAKMREIADSI-GAYLFVDMAHVAGLVAAGVYPNPVPH-----AHVVTTTTHKTL--AGPRGGLILAKGGSEE 246 (416)
T ss_dssp SCCC---HHHHHHHHHHT-TCEEEEECTTTHHHHHHTSSCCCTTT-----SSEEEEESSSTT--CCCSCEEEEESSCCHH
T ss_pred cccC---HHHHHHHHHhc-CceEEcchhhhhcceeccccCCcccc-----cceeeeehhhcc--cCCCceEEEeccchHh
Confidence 5667 88899999999 99999999987543333223333222 138899999997 68888999975 67
Q ss_pred HHHHHHHHHhcccCCCChHHHHHH-HHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC-CCcceEEeEecC
Q 012095 320 FVAACNKIQSQFTSGASSISQKAG-VAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLFIDFS 397 (471)
Q Consensus 320 ~i~~l~~~~~~~~~~~~~~~q~aa-~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~-p~~g~~~~~~~~ 397 (471)
+.+++.+...+...+.+...+.++ +.++.+. .....++..++..++.+.|.+.|.+. |+.+.. ...+..+++++.
T Consensus 247 ~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea--~~~~fk~Y~~qvv~NA~~La~~L~~~-G~~iv~ggTdnHlvlvdl~ 323 (416)
T d1dfoa_ 247 LYKKLNSAVFPGGQGGPLMHVIAGKAVALKEA--MEPEFKTYQQQVAKNAKAMVEVFLER-GYKVVSGGTDNHLFLVDLV 323 (416)
T ss_dssp HHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECG
T ss_pred HHHHHHhhhCcccccCccHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHHHhC-CcccccCCCCCceeEEEec
Confidence 888887766555544444444443 3344431 13445677777888899999999888 888863 234566788885
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC------CCCcEEEEeec------CHHHHHHHHHHHHHHHHh
Q 012095 398 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG------DDTCIRISYAA------SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~------~~~~iRis~~~------~~e~i~~~~~~l~~~l~~ 464 (471)
+. + .+. ..++.+|++.||.+.--...+ .+..|||.... .++++++..+-|.++++.
T Consensus 324 ~~-~---------~~G-~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~ 391 (416)
T d1dfoa_ 324 DK-N---------LTG-KEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDS 391 (416)
T ss_dssp GG-T---------CCH-HHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred cc-C---------CCH-HHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 43 1 133 445556778899875322222 24679998764 678999999999888864
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.72 E-value=3.9e-15 Score=145.83 Aligned_cols=309 Identities=16% Similarity=0.147 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhc-CCC--CeEEEcCC
Q 012095 111 VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-SPG--DEVIIPAP 187 (471)
Q Consensus 111 ~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~-~~g--d~Vlv~~p 187 (471)
++-.+++.+.+..+....|+ -..+|.+.+++++ | .+.++.+++++.|+.++++++- .+| |+|+++..
T Consensus 12 ~~~~~~v~~~l~~~~~~~G~--~v~~fE~~~~~~~----g----~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~ 81 (371)
T d2fnua1 12 KEDKKAVLEVLNSKQLTQGK--RSLLFEEALCEFL----G----VKHALVFNSATSALLTLYRNFSEFSADRNEIITTPI 81 (371)
T ss_dssp HHHHHHHHHHHTSSCCSSSH--HHHHHHHHHHHHH----T----CSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSS
T ss_pred HHHHHHHHHHHcCCCccCCH--HHHHHHHHHHHHH----C----cCeEEEEecHHHHHHHHHHHhcccCCCCCeeecccc
Confidence 55567888888765544333 4577778887776 3 3578899999999999999874 344 58999999
Q ss_pred CCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEE
Q 012095 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLS 267 (471)
Q Consensus 188 ~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~ 267 (471)
+|+.....+...|++++.++++.+. .++.+.+++.+++++++|++. +..|...+ +++|.++|+++ +++||+
T Consensus 82 t~~a~~~ai~~~G~~pv~vDi~~~~--~~~~~~~~~~~~~~t~avi~v---h~~G~~~~---~~~i~~~~~~~-~i~lIE 152 (371)
T d2fnua1 82 SFVATANMLLESGYTPVFAGIKNDG--NIDELALEKLINERTKAIVSV---DYAGKSVE---VESVQKLCKKH-SLSFLS 152 (371)
T ss_dssp SCTHHHHHHHHTTCEEEECCBCTTS--SBCGGGSGGGCCTTEEEEEEE---CGGGCCCC---HHHHHHHHHHH-TCEEEE
T ss_pred cccccceeeeccCcccccccccccc--cccchhhhhhccchhhccccc---cccccccc---ccccccccccc-chhhcc
Confidence 9999999999999999999987654 367788999999999999865 45688888 88899999999 999999
Q ss_pred ccCCCcccc-CCCCccccccCCCCCCceEEEecC--CcccCccchhheeeEcC-HHHHHHHHHHHhc-------------
Q 012095 268 DEIYEHIIY-APATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAGP-KHFVAACNKIQSQ------------- 330 (471)
Q Consensus 268 De~y~~~~~-~~~~~~~~~~~~~~~~~~i~~~S~--SK~~g~~G~R~G~v~~~-~~~i~~l~~~~~~------------- 330 (471)
|.++..... .+. ....+ ..+.+.|| +|.++ +|- .|.++.+ +++.+.++..+..
T Consensus 153 Daaqa~Ga~~~~~---~~G~~-----g~~~~~Sf~~~K~l~-~g~-GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 222 (371)
T d2fnua1 153 DSSHALGSEYQNK---KVGGF-----ALASVFSFHAIKPIT-TAE-GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVK 222 (371)
T ss_dssp ECTTCTTCEETTE---ETTSS-----SSEEEEECCTTSSSC-CSS-CEEEEESCHHHHHHHHHHTBTTEEESSSSCEEES
T ss_pred chhhccCceeccc---cCCcc-----ccccccccccccccc-ccc-ceEEEeechhhhhhcccccccccccccccccccc
Confidence 999987432 221 11111 12456666 79886 332 5777764 6788887766432
Q ss_pred ---ccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC----Ccc-eEEeEecCCccCC
Q 012095 331 ---FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP----QGA-FYLFIDFSTYYGS 402 (471)
Q Consensus 331 ---~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p----~~g-~~~~~~~~~~~~~ 402 (471)
+++-++.+..+.+...|+. +++..++-+++.+++.+.|.+.+++....+ ... +...+.+.....
T Consensus 223 ~~G~n~r~sel~Aaigl~qL~~-------l~~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 294 (371)
T d2fnua1 223 SIGHNFRLNEIQSALGLSQLKK-------APFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFF- 294 (371)
T ss_dssp SCCCBCCCCHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGG-
T ss_pred cccccccccchhhhhhhhhhhh-------ccchhhhhhhhhhhhcccccccccccccccccccccccccccccccccch-
Confidence 2233555554444544442 444455555666777788888777655422 112 112223332110
Q ss_pred cccCCCCCCCHHHHHHHHHHcCCEEEECCCCC-----------CCC----------CcEEEEeec--CHHHHHHHHHHHH
Q 012095 403 EAEGFGKIENSESLCRYLLDKAQVALVPGDAF-----------GDD----------TCIRISYAA--SLTTLQAAVERIK 459 (471)
Q Consensus 403 ~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f-----------~~~----------~~iRis~~~--~~e~i~~~~~~l~ 459 (471)
..-.++.+.|.++ ||-+.+.... ... ..+.|-+.. ++++++..++.|.
T Consensus 295 --------~~r~~~~~~L~~~-gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~ 365 (371)
T d2fnua1 295 --------TCKKLILESLHKR-GILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVL 365 (371)
T ss_dssp --------GGHHHHHHHHHHT-TEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHHC-CCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHHHHH
Confidence 1235677877655 9988765321 011 145555444 8899999999999
Q ss_pred HHHHhh
Q 012095 460 KGLLTL 465 (471)
Q Consensus 460 ~~l~~~ 465 (471)
++++.+
T Consensus 366 ~~~~~~ 371 (371)
T d2fnua1 366 KTFESF 371 (371)
T ss_dssp HHHHHH
T ss_pred HHHHcC
Confidence 998764
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.72 E-value=6.6e-16 Score=154.41 Aligned_cols=355 Identities=11% Similarity=0.063 Sum_probs=210.5
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 93 ~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
.|+++||+..|. ..++- ++.+.+|+.+++.+..+ .......+....+++.+.+.... ..+.+.+++++++|..
T Consensus 39 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~--~~~~~~~~~~~~la~~L~~~~~~--~~~~v~f~~sGseA~e 114 (431)
T d1zoda1 39 DGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH--LFSEMLSRPVVDLATRLANITPP--GLDRALLLSTGAESNE 114 (431)
T ss_dssp TCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCC--CCTTCCCHHHHHHHHHHHHHSCT--TCCEEEEESCHHHHHH
T ss_pred CCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhccc--cccccccHHHHHHHHHHHHhCCc--ccceeeecccccchHH
Confidence 688899998774 45554 78999999999887432 22223344556677777665432 3479999999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCChHHHHHHcCC------------EEEEecCCCCC-------CCcCC---HHHHHhhh
Q 012095 170 QAVLAVC--SPGDEVIIPAPFWVSYPEMARIADA------------TPVILPTRISE-------NFLLD---PKVLESKL 225 (471)
Q Consensus 170 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~G~------------~~~~v~~~~~~-------~~~ld---~e~l~~~l 225 (471)
.+++... ...+.|+..+.+|++....+...+. ....++..... ....+ ++.+...+
T Consensus 115 ~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (431)
T d1zoda1 115 AAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLI 194 (431)
T ss_dssp HHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHHHHHHHH
Confidence 9988742 2347788888888886655433221 11222211100 00012 23333322
Q ss_pred c---cCCcEEEEcCC-CCCcc-cCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCc-cccccCCCCCCceEEEec
Q 012095 226 T---EKSRLLILCSP-SNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWERTLTVNG 299 (471)
Q Consensus 226 ~---~~~~~i~i~~p-~NPtG-~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~~~~~~~i~~~S 299 (471)
. ++.-+.+|..| +.-.| ...|++.+++|.++|++| |+++|.||++.++...|... .....+.+ | +-+
T Consensus 195 ~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~-gillI~DEV~tG~gRtG~~~~~~~~gv~P--D----i~~ 267 (431)
T d1zoda1 195 DRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEAR-GMLLILDEAQTGVGRTGTMFACQRDGVTP--D----ILT 267 (431)
T ss_dssp HHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSSTHHHHTCCC--S----EEE
T ss_pred HHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhc-CceEEeccccccccccccccccccCCCCc--c----hhc
Confidence 1 22223344445 32244 467999999999999999 99999999999754333211 11112222 2 445
Q ss_pred CCcccCccchhheeeEcCHHHHHHHHHHH--hcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcC
Q 012095 300 FSKAFAMTGWRLGYIAGPKHFVAACNKIQ--SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377 (471)
Q Consensus 300 ~SK~~g~~G~R~G~v~~~~~~i~~l~~~~--~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 377 (471)
++|.++ .|+.+|.+++.+++.+...... ...+++.++++..++.+.|+.-.. +..+++..+.-+..++.+.+.+.+
T Consensus 268 ~gK~l~-gG~p~~av~~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~-~~~~~~~~~~g~~l~~~l~~~~~~ 345 (431)
T d1zoda1 268 LSKTLG-AGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR-DGLVARANVMGDRLRRGLLDLMER 345 (431)
T ss_dssp ECHHHH-TTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccc-cccccceeeeeecchhhhhcccccccCCCCCCcchHHHHHHHHHHhhh-hhhhHHHHHHHHHHhhhhhhhhhc
Confidence 889998 8899999999998888765432 335677899998888888764111 233333333333333444444444
Q ss_pred CCCCeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHH
Q 012095 378 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAV 455 (471)
Q Consensus 378 ~~g~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~ 455 (471)
.+-+.-....|.|+ -+.+......... .......+.+.++++ |+....-..-+..+.+|++... ++++|++++
T Consensus 346 ~~~i~~vrG~Glm~-~ie~~~~~~~~~~---~~~~~~~i~~~~~~~-Gl~~~~~~~~~~~~~i~l~Ppl~it~~eid~~~ 420 (431)
T d1zoda1 346 FDCIGDVRGRGLLL-GVEIVKDRRTKEP---ADGLGAKITRECMNL-GLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGL 420 (431)
T ss_dssp CTTEEEEEEETTEE-EEEEEEETTTTEE---CTTHHHHHHHHHHHT-TEECCEECCTTSCCEEEECCCTTCCHHHHHHHH
T ss_pred CCCeEEEeecceEE-EEEEecCCcccCc---cHHHHHHHHHHHHHh-CcccCeeeecCCCCEEEEECCCCCCHHHHHHHH
Confidence 43232233344443 3333111000000 001245678888876 8753211111234689998764 999999999
Q ss_pred HHHHHHHHhh
Q 012095 456 ERIKKGLLTL 465 (471)
Q Consensus 456 ~~l~~~l~~~ 465 (471)
++|.+++++.
T Consensus 421 ~~l~~al~~v 430 (431)
T d1zoda1 421 SLLGQAIERA 430 (431)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999875
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=1e-17 Score=169.69 Aligned_cols=321 Identities=13% Similarity=0.081 Sum_probs=194.2
Q ss_pred HHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCe---------EEEcCCCCC
Q 012095 120 AIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDE---------VIIPAPFWV 190 (471)
Q Consensus 120 ~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~---------Vlv~~p~y~ 190 (471)
+...+...|+.+++..+|++.+++++ | .+.++.+++++++...++.+++++||. +......|.
T Consensus 62 ~~~~gd~~Y~~~~~~~~le~~~a~l~----G----~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~ 133 (467)
T d2v1pa1 62 AMMRGDEAFSGSRSYYALAESVKNIF----G----YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFD 133 (467)
T ss_dssp HTTSCCCCSSSCHHHHHHHHHHHHHT----C----CSEEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCH
T ss_pred hccccchhhcCCchHHHHHHHHHHHH----C----CCEEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEeccccc
Confidence 33345677988778888888888875 3 457888899999999999998876654 444444555
Q ss_pred ChHHHHHHcCCEEEEecCCCC--------CCCcCCHHHHHhhhcc----CCcEEEEcCCCCC-cccCCCHHHHHHHHHHH
Q 012095 191 SYPEMARIADATPVILPTRIS--------ENFLLDPKVLESKLTE----KSRLLILCSPSNP-TGSVYPKNLLDEIARIV 257 (471)
Q Consensus 191 ~~~~~~~~~G~~~~~v~~~~~--------~~~~ld~e~l~~~l~~----~~~~i~i~~p~NP-tG~~~~~~~l~~i~~l~ 257 (471)
.....+...|+.++.++.+.. ....+|++++++.+++ .+.++++.+.+|. .|.+++.+++++|.++|
T Consensus 134 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia 213 (467)
T d2v1pa1 134 TTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIA 213 (467)
T ss_dssp HHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHH
T ss_pred ccHHHHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHH
Confidence 556678889999998887532 1346899999998853 4567777777764 46889999999999999
Q ss_pred HhCCCeEEEEccCCCccc-c------CCCCccccccCCC--CCCceEEEecCCcccCccchhheeeEcCHHHHHH-HHHH
Q 012095 258 AKHPRLLVLSDEIYEHII-Y------APATHTSFASLPG--MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA-CNKI 327 (471)
Q Consensus 258 ~~~~~~~ii~De~y~~~~-~------~~~~~~~~~~~~~--~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~-l~~~ 327 (471)
++| |+++++|+++.... + .+....++..+.. .....++..|.+|.++ |...|+++.+++.+.. ....
T Consensus 214 ~~~-g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~--~~~gg~i~~~~~~~~~~~~~~ 290 (467)
T d2v1pa1 214 KKY-DIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAM--VPMGGLLCMKDDSFFDVYTEC 290 (467)
T ss_dssp HHT-TCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTC--CSSCEEEEECSGGGHHHHHHH
T ss_pred HHc-CCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCC--CCCceeEEecchhhhhHHHhh
Confidence 999 99999999975311 0 0000111111000 0122366667888765 4456777776543332 2211
Q ss_pred Hh--------cccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceEEeEe----
Q 012095 328 QS--------QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFID---- 395 (471)
Q Consensus 328 ~~--------~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~~~~~---- 395 (471)
+. ....+.......++...+.... ..+++ ++..++.+++.+.|.+. ++.+.++.+.. ..++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~----~~~~~~~~~l~~~L~~~-~~~v~~~~~~~-~~~~~~~~ 363 (467)
T d2v1pa1 291 RTLCVVQEGFPTYGGLEGGAMERLAVGLYDGM-NLDWL----AYRIAQVQYLVDGLEEI-GVVCQQAGGHA-AFVDAGKL 363 (467)
T ss_dssp HHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTT-CHHHH----HHHHHHHHHHHHHHHHT-TCCEEEECSSC-EEEEHHHH
T ss_pred cccccccccCcchhhhHHHHHHHHHHHhHHhh-hHHHH----HHHHHHHHHHHHHHHhc-CCcccCCCccc-eeecchhh
Confidence 11 1112233333333343343321 12333 33445667777777776 55444333322 2222
Q ss_pred cCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC-------------CCCCCcEEEEeec---CHHHHHHHHHHHH
Q 012095 396 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA-------------FGDDTCIRISYAA---SLTTLQAAVERIK 459 (471)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~-------------f~~~~~iRis~~~---~~e~i~~~~~~l~ 459 (471)
++.... .. .....+...|+.+.||....... +.....+|+++.. ++|+|+++++.|+
T Consensus 364 ~~~~~~---~~----~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~ 436 (467)
T d2v1pa1 364 LPHIPA---DQ----FPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFK 436 (467)
T ss_dssp STTSCG---GG----CHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHH
T ss_pred cCCcch---hh----hhhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHH
Confidence 121100 00 13455666677777886542211 1123579999864 8999999999999
Q ss_pred HHHHhh
Q 012095 460 KGLLTL 465 (471)
Q Consensus 460 ~~l~~~ 465 (471)
+++++.
T Consensus 437 ~v~~~~ 442 (467)
T d2v1pa1 437 HVKENA 442 (467)
T ss_dssp HHHHTG
T ss_pred HHHHHH
Confidence 998753
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=2e-15 Score=147.11 Aligned_cols=209 Identities=12% Similarity=0.102 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHH----HcCCEEEEecCCCCC
Q 012095 137 LRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IADATPVILPTRISE 212 (471)
Q Consensus 137 lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~----~~G~~~~~v~~~~~~ 212 (471)
-++.+++.++...| .+..++++++..++..+ ..++.+||.|++....|.+....+. ..|.++..++
T Consensus 56 T~~~lE~~la~LE~----~~~a~~~sSGmaAi~~~-l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~----- 125 (393)
T d1n8pa_ 56 NRENLERAVAALEN----AQYGLAFSSGSATTATI-LQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTN----- 125 (393)
T ss_dssp HHHHHHHHHHHHTT----CSEEEEESCHHHHHHHH-HHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEES-----
T ss_pred HHHHHHHHHHHHhC----CceEEEecCchhHHHhh-hhcccCCCeeeeeeeecccchhhhhhhhhcccceeEEee-----
Confidence 34444444444433 35677777778888754 5677899999999999988776554 4566666553
Q ss_pred CCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHH----hCCCeEEEEccCCCccccCCCCccccccCC
Q 012095 213 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVA----KHPRLLVLSDEIYEHIIYAPATHTSFASLP 288 (471)
Q Consensus 213 ~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~----~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 288 (471)
.+.+++++++++++++|++.+|.||+..+.+ +++|+++|+ ++ ++++|+|+.|..-.. ...+
T Consensus 126 ---~~~~~~~~~i~~~t~lv~~EspsNP~l~v~D---i~~ia~~a~~~~~~~-g~~lvVDnT~atP~~-------~~Pl- 190 (393)
T d1n8pa_ 126 ---DLLNDLPQLIKENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQ-DVILVVDNTFLSPYI-------SNPL- 190 (393)
T ss_dssp ---SHHHHHHHHSCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTT-TCEEEEECTTTHHHH-------CCGG-
T ss_pred ---cchHHHHHHhhhhcceeEecCcchhhhhccc---hhhhhhhhhhhcccC-CceEEEecCccCccc-------CCch-
Confidence 2567899999999999999999999999999 888888888 67 899999999963111 1111
Q ss_pred CCCCceEEEecCCcccC-ccchhheeeEc-CHHHHHHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 012095 289 GMWERTLTVNGFSKAFA-MTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366 (471)
Q Consensus 289 ~~~~~~i~~~S~SK~~g-~~G~R~G~v~~-~~~~i~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~ 366 (471)
..+-.|++.|.+|.++ -...-.|.++. ++++.++++..+...+..+++.....+..-|+. +..+.++..+
T Consensus 191 -~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p~~a~ll~rgl~T-------l~lR~~~~~~ 262 (393)
T d1n8pa_ 191 -NFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKT-------LHLRVRQAAL 262 (393)
T ss_dssp -GGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-------HHHHHHHHHH
T ss_pred -hhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhhcCCCCChHHHHHHHhCCcc-------hhhHHHHHHH
Confidence 1234499999999984 33355687764 567888888888878888898887666666654 4555666667
Q ss_pred HHHHHHHHhcCC
Q 012095 367 RRDFLVKSFGEL 378 (471)
Q Consensus 367 ~r~~l~~~L~~~ 378 (471)
+...+.+.|+..
T Consensus 263 nA~~lA~~L~~~ 274 (393)
T d1n8pa_ 263 SANKIAEFLAAD 274 (393)
T ss_dssp HHHHHHHHHTSC
T ss_pred HHHHHHHHHHhc
Confidence 777788888653
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.69 E-value=5.1e-16 Score=156.83 Aligned_cols=311 Identities=13% Similarity=0.047 Sum_probs=175.2
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHH-HcCCEEEEecCCCCC
Q 012095 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR-IADATPVILPTRISE 212 (471)
Q Consensus 134 ~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-~~G~~~~~v~~~~~~ 212 (471)
+.++++.+|+++ | ..+-+++++|+++++..++.++++|||+|+++.-+|.+..+.+. +.+..++.++.+.+.
T Consensus 68 i~eae~~~A~~~----g---a~~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~~~~ 140 (462)
T d1c4ka2 68 AVAAEKHAARVY----N---ADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNP 140 (462)
T ss_dssp HHHHHHHHHHHT----T---CSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECT
T ss_pred HHHHHHHHHHHh----C---CCeEEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHHHHhcCCceeeeccccc
Confidence 456777777764 4 23445666777888888899999999999999999988876554 445555544432211
Q ss_pred -C--C-----cCCHHHH---------HhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccc
Q 012095 213 -N--F-----LLDPKVL---------ESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII 275 (471)
Q Consensus 213 -~--~-----~ld~e~l---------~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~ 275 (471)
+ . .++.+.+ +++...+++.+++...+|-+|.+.+ +++|+++|++| +++|++|++|....
T Consensus 141 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d---l~~I~~ia~~~-g~~l~vD~A~~~~~ 216 (462)
T d1c4ka2 141 YGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN---AHEVVKRIGHL-CDYIEFDSAWVGYE 216 (462)
T ss_dssp TCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC---HHHHHHHHGGG-BSEEEEECTTCCGG
T ss_pred ccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh---HHHHHHHHHHc-CCEEEEechhhccc
Confidence 1 1 1233222 3334445665665555667999999 99999999999 99999999997533
Q ss_pred c-CCCCccccccC----CCCCCceEEEecCCcccCccchhheeeE-cCHHHH---------HHHHHHHhc-ccCCCChHH
Q 012095 276 Y-APATHTSFASL----PGMWERTLTVNGFSKAFAMTGWRLGYIA-GPKHFV---------AACNKIQSQ-FTSGASSIS 339 (471)
Q Consensus 276 ~-~~~~~~~~~~~----~~~~~~~i~~~S~SK~~g~~G~R~G~v~-~~~~~i---------~~l~~~~~~-~~~~~~~~~ 339 (471)
. .+....+.... ....+..+++.|++|.+|.++ .|.++ ..+..+ +.+.+.... .+.+++...
T Consensus 217 ~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~--~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~ 294 (462)
T d1c4ka2 217 QFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPM 294 (462)
T ss_dssp GSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT--TCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHH
T ss_pred cccCcCCcchhhccccccccCCccEEEEecCccccccc--ceEEEEeccccccccchhhhHHHHHHhhhhcccCCchHHH
Confidence 2 22111111111 112344689999999997433 35544 333222 222222222 233344443
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeee-C---------------------------C-----
Q 012095 340 QKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-E---------------------------P----- 386 (471)
Q Consensus 340 q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~-~---------------------------p----- 386 (471)
...+..+.... .....+++.++..++.+.+++.+.++.+.... . |
T Consensus 295 ~asl~~a~~~~--~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (462)
T d1c4ka2 295 YAALDVNAAMQ--EGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWH 372 (462)
T ss_dssp HHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTT
T ss_pred HHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhcccchhccCCcchhc
Confidence 33333333220 13344555566666666677766654332100 0 0
Q ss_pred -----CcceE------EeEecCCccCCcccCC-CCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHH
Q 012095 387 -----QGAFY------LFIDFSTYYGSEAEGF-GKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQ 452 (471)
Q Consensus 387 -----~~g~~------~~~~~~~~~~~~~~~~-~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~ 452 (471)
....+ +.+..+... ...... ........+.+.|. ++||.+... ..+.||++++. |+++++
T Consensus 373 ~~~~~~~~~~~~Dp~k~~l~~~gi~-~~~g~~~~~G~~~~~~~~~L~-~~gI~~e~~----~~~~i~~~~s~~~T~edid 446 (462)
T d1c4ka2 373 AYEGYGDNQYYVDPNKFMLTTPGIN-PETGDYEDFGVPATIVANYLR-DHGIIPEKS----DLNSILFLMTPAETPAKMN 446 (462)
T ss_dssp CCTTCCTTCEEECTTEEEEECSSEE-TTTTEECSSCCCHHHHHHHHH-HTTCCCSEE----CSSEEEEECCTTCCHHHHH
T ss_pred cccccCccceecccceeEEecCCcc-ccccchhhcCCcHHHHHHHHH-HcCCeeecc----CCCeEEEEecCCCCHHHHH
Confidence 00011 222222210 000000 00124667777665 568854321 24679999886 999999
Q ss_pred HHHHHHHHHHHhh
Q 012095 453 AAVERIKKGLLTL 465 (471)
Q Consensus 453 ~~~~~l~~~l~~~ 465 (471)
.+++.|.++.+.+
T Consensus 447 ~li~aL~ei~r~~ 459 (462)
T d1c4ka2 447 NLITQLLQLQRLI 459 (462)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987665
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.68 E-value=2.8e-15 Score=151.05 Aligned_cols=330 Identities=12% Similarity=0.063 Sum_probs=219.5
Q ss_pred hHHHH-HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCC-------CCCcEEEeCChHHHHHHHHHHhcC----
Q 012095 110 PVLIA-EAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSY-------TPDQILVSNGAKQSILQAVLAVCS---- 177 (471)
Q Consensus 110 p~~v~-~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~-------~~~~i~it~G~~~al~~~~~~l~~---- 177 (471)
++.+. +-+..++......|...+...++.+.+.+++.+.+|.+- ....-++|+|+++++..++.+..+
T Consensus 86 ~~~~l~~~~~~~~n~n~~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~ 165 (476)
T d1js3a_ 86 YPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVR 165 (476)
T ss_dssp HHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccchhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHH
Confidence 44444 444555544445555556678899999999999999752 123568999999988877755321
Q ss_pred ------CC---------CeEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccC------CcEEEEcC
Q 012095 178 ------PG---------DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK------SRLLILCS 236 (471)
Q Consensus 178 ------~g---------d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~------~~~i~i~~ 236 (471)
+| =.|++++-+|.+....+...|..++.||++ +++.+|+++|++.+.+. +-+|+.+.
T Consensus 166 ~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~lGl~~~~v~~d--~~~~md~~~L~~~i~~~~~~g~~p~~Vvata 243 (476)
T d1js3a_ 166 RLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSD--GKFAMRASALQEALERDKAAGLIPFFVVATL 243 (476)
T ss_dssp HHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEB
T ss_pred hhcccccCcccccccCceEEEecccccHHHHHHHHhcCceEEEeccC--CCCCcCHHHHHHHHHHHHhcCCCcEEEeecC
Confidence 11 147788999999999999999999999986 45789999999999652 33555677
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCC-ccccccCCCCCCceEEEecCCcccCccchhheeeE
Q 012095 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT-HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 315 (471)
Q Consensus 237 p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~ 315 (471)
.++.||.+-+ +++|+++|++| ++|+.+|.+|+.+..-... ...+..+. .-.-+.-+++|.++.| .-.|+++
T Consensus 244 Gtt~~G~iDp---l~~I~~i~~~~-~~wlHVDAA~Gg~~~~~~~~~~~~~gi~---~aDSit~d~HK~l~~P-~~~g~~l 315 (476)
T d1js3a_ 244 GTTSCCSFDN---LLEVGPICHEE-DIWLHVDAAYAGSAFICPEFRHLLNGVE---FADSFNFNPHKWLLVN-FDCSAMW 315 (476)
T ss_dssp SCTTTCCBCC---HHHHHHHHHHT-TCEEEEECTTGGGGGGSTTTGGGGTTGG---GCSEEEECHHHHSSCC-SSCEEEE
T ss_pred CCccceeecc---HHHHHHHHHhc-CcEEEEecccchhhhhhcchhhhhcCCc---ccceeeecCccccccC-Ccceeec
Confidence 8999999999 99999999999 9999999999875432211 11111121 1224566789999755 4667776
Q ss_pred cCH-HHHH-HH-------HHHHhc---------ccC-CC---ChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHH
Q 012095 316 GPK-HFVA-AC-------NKIQSQ---------FTS-GA---SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 373 (471)
Q Consensus 316 ~~~-~~i~-~l-------~~~~~~---------~~~-~~---~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~ 373 (471)
..+ .... .+ ...... ++. +. ..+...++...+ ..+.++++.++..+.++++.+
T Consensus 316 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~-----G~~g~~~~i~~~~~lA~~l~~ 390 (476)
T d1js3a_ 316 VKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMY-----GVKGLQAYIRKHVQLSHEFEA 390 (476)
T ss_dssp ESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHhcChhhhccccccccccccccccccccchhhHHHHHHHHHHHH-----hHhHHHHHHHHHHHHHHHHHH
Confidence 653 2221 11 100000 000 11 123223333333 256788888888899999999
Q ss_pred HhcCCCCCeee-CCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec---CHH
Q 012095 374 SFGELEGVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLT 449 (471)
Q Consensus 374 ~L~~~~g~~~~-~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~---~~e 449 (471)
.+++.|++++. +|.-+. +.+++...- .-..++.++|.+.+.+++.+.. .....++|+++.. +++
T Consensus 391 ~l~~~~~fel~~~p~l~i-V~Fr~~~~d----------~~n~~l~~~l~~~G~~~~s~t~-~~g~~~lR~~i~n~~Tt~~ 458 (476)
T d1js3a_ 391 FVLQDPRFEVCAEVTLGL-VCFRLKGSD----------GLNEALLERINSARKIHLVPCR-LRGQFVLRFAICSRKVESG 458 (476)
T ss_dssp HHHHCTTEEECSCCCSSE-EEEEESSCH----------HHHHHHHHHHHHHTSCBCEEEE-ETTEEEEEEECCCTTCCHH
T ss_pred HHhcCCCeEEECCCceEE-EEEEccCCh----------HHHHHHHHHHHhcCCEEEeeee-ECCEEEEEEEeCCCCCCHH
Confidence 99999899876 455565 555664210 0235677888777556555532 1223489999874 788
Q ss_pred HHHHHHHHHHHHHHhhC
Q 012095 450 TLQAAVERIKKGLLTLR 466 (471)
Q Consensus 450 ~i~~~~~~l~~~l~~~~ 466 (471)
+|+.+++.|++..+++.
T Consensus 459 did~~~~~i~~~a~~ll 475 (476)
T d1js3a_ 459 HVRLAWEHIRGLAAELL 475 (476)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999887753
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.67 E-value=8.6e-15 Score=143.51 Aligned_cols=313 Identities=15% Similarity=0.142 Sum_probs=195.7
Q ss_pred HHHHHHHHHcCCCC-CCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCCCC
Q 012095 114 AEAGINAIREGFTR-YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVS 191 (471)
Q Consensus 114 ~~a~~~~~~~~~~~-Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~ 191 (471)
++++.+.+..++.. .|| -..+|.+.+++++ | ....+.++++|.|+.++++++ +++||+|++|..+|+.
T Consensus 4 ~~~~~~~l~~~~~~~~G~--~~~~fE~~~~~~~----~----~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a 73 (374)
T d1o69a_ 4 LKYIEEVFKSNYIAPLGE--FVNRFEQSVKDYS----K----SENALALNSATAALHLALRVAGVKQDDIVLASSFTFIA 73 (374)
T ss_dssp HHHHHHHHHHTTTSCTTH--HHHHHHHHHHHHH----C----CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGG
T ss_pred HHHHHHHHhcCCcCCCCH--HHHHHHHHHHHHH----C----cCeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHh
Confidence 46677777776532 444 3577888888876 3 357899999999999999998 7899999999999999
Q ss_pred hHHHHHHcCCEEEEecCCCCCCCcCCHHH--HHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEcc
Q 012095 192 YPEMARIADATPVILPTRISENFLLDPKV--LESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 269 (471)
Q Consensus 192 ~~~~~~~~G~~~~~v~~~~~~~~~ld~e~--l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De 269 (471)
....+..+|++++.++++++. +..+.+. +....++++++|++.+ ..|...+ +++|.++|+++ +++||+|.
T Consensus 74 ~~~~~~~~g~~pv~~Di~~~~-~~~~~~~~~~~~~~~~~~~aii~~~---~~G~~~d---~~~i~~~~~~~-~i~vIED~ 145 (374)
T d1o69a_ 74 SVAPICYLKAKPVFIDCDETY-NIDVDLLKLAIKECEKKPKALILTH---LYGNAAK---MDEIVEICKEN-DIVLIEDA 145 (374)
T ss_dssp GTHHHHHTTCEEEEECBCTTS-SBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCC---HHHHHHHHHHT-TCEEEEEC
T ss_pred hHHHHhhccceeEeccccccc-ccccccccccchhcccccccccccc---cccchhh---hHHHHHHhhcc-Ccchhhhh
Confidence 999999999999999998532 3334443 3355677899998644 4677888 88999999999 99999999
Q ss_pred CCCcccc-CCCCccccccCCCCCCceEEEecC--CcccCccchhheeeEc-CHHHHHHHHHHHhc--------------c
Q 012095 270 IYEHIIY-APATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAG-PKHFVAACNKIQSQ--------------F 331 (471)
Q Consensus 270 ~y~~~~~-~~~~~~~~~~~~~~~~~~i~~~S~--SK~~g~~G~R~G~v~~-~~~~i~~l~~~~~~--------------~ 331 (471)
++..... .+. ....+ ..+.+.|| +|.++..| -|.++. ++++.+++..++.. +
T Consensus 146 a~a~g~~~~~~---~~G~~-----gd~~~fSf~~~K~l~tge--GG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~ 215 (374)
T d1o69a_ 146 AEALGSFYKNK---ALGTF-----GEFGVYSYNGNKIITTSG--GGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGY 215 (374)
T ss_dssp TTCTTCEETTE---ETTSS-----SSEEEEECCTTSSSCCSS--CEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCC
T ss_pred hhhhcceECCe---ecCCC-----CceEEEeccCcccccccc--ceeehhhhHHHHHhhccccccccccccccccccCCc
Confidence 9986432 221 11111 13667777 58886333 466665 57788887766432 1
Q ss_pred cCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCC--c-c--eEEeEecCCccCCcc--
Q 012095 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ--G-A--FYLFIDFSTYYGSEA-- 404 (471)
Q Consensus 332 ~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~--~-g--~~~~~~~~~~~~~~~-- 404 (471)
++-++.+..+++...|.. +.+..++-++..+++.+.|.+........+. . . +++.+..... ....
T Consensus 216 N~rm~ei~Aaig~~qL~~-------l~~~i~~r~~i~~~y~~~L~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~ 287 (374)
T d1o69a_ 216 NYRLSNVLGAIGVAQMEV-------LEQRVLKKREIYEWYKEFLGEYFSFLDELENSRSNRWLSTALINFDKN-ELNACQ 287 (374)
T ss_dssp BCBCCHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHHTTTEECCCCCTTEECCCSSEEEEESCCGG-GSCCCC
T ss_pred cccccchhhhhhHHHHhh-------hhhhcchhHHHHHHHHhhccccccccccccCCCCChhheeeeeccccc-cccccc
Confidence 233556555555555543 3333444445556666777664221111110 1 1 1122221110 0000
Q ss_pred -------cCCCCCCCHHHHHHHHHHcCCEEEECCCCCC-------------CC-------CcEEEEeec--CHHHHHHHH
Q 012095 405 -------EGFGKIENSESLCRYLLDKAQVALVPGDAFG-------------DD-------TCIRISYAA--SLTTLQAAV 455 (471)
Q Consensus 405 -------~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~-------------~~-------~~iRis~~~--~~e~i~~~~ 455 (471)
..........++.++|.++ ||-+++....- .+ ..+.|-+.. ++++++..+
T Consensus 288 ~~~~~~~~~~~~~~~r~~l~~~L~~~-gI~~r~~y~pl~~~~~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~ 366 (374)
T d1o69a_ 288 KDINISQKNITLHPKISKLIEDLKNK-QIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEIS 366 (374)
T ss_dssp EEEECCCCCCCCCHHHHHHHHHHHHT-TCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHH
T ss_pred cccccchhhccchhhHHHHHHHHHHC-CCCEEEeCcchhhChhhhcCCCCCCHHHHHHHhCEEECcCCCCCCHHHHHHHH
Confidence 0000001345677877655 99887643210 01 135554444 899999999
Q ss_pred HHHHHHHH
Q 012095 456 ERIKKGLL 463 (471)
Q Consensus 456 ~~l~~~l~ 463 (471)
+.|.++++
T Consensus 367 ~~I~~~lk 374 (374)
T d1o69a_ 367 KLILKSIK 374 (374)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHC
Confidence 99998863
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.65 E-value=1.8e-14 Score=140.69 Aligned_cols=337 Identities=14% Similarity=0.074 Sum_probs=208.1
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCC-C------CCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cEEEeCChHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGF-T------RYTPNAGTLELRSAICHKLKEENGLSYTPD--QILVSNGAKQ 166 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~-~------~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~--~i~it~G~~~ 166 (471)
..|.|-..++-. ++.+.+++...+.+.. . .|+...-+.++.....++..+.|+..+..+ ||-.- +++.
T Consensus 28 ~~l~LiaSEN~~--S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~-SGs~ 104 (463)
T d2a7va1 28 RGLELIASENFC--SRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPY-SGSP 104 (463)
T ss_dssp HSEECCTTCCCC--CHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCS-SHHH
T ss_pred cCeeEeccCCcC--CHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCcccc-ccHH
Confidence 358888887763 5677777776664421 1 233334466777777778888888765544 34444 4556
Q ss_pred HHHHHHHHhcCCCCeEEEcCCCCCChHHH--------HHHcC--CEEEEecCCCCCCCcCCHHHHHhhhc-cCCcEEEEc
Q 012095 167 SILQAVLAVCSPGDEVIIPAPFWVSYPEM--------ARIAD--ATPVILPTRISENFLLDPKVLESKLT-EKSRLLILC 235 (471)
Q Consensus 167 al~~~~~~l~~~gd~Vlv~~p~y~~~~~~--------~~~~G--~~~~~v~~~~~~~~~ld~e~l~~~l~-~~~~~i~i~ 235 (471)
|...++.+|++|||+|+..++...++... ....| .+.+.+.++++ +..+|.+++++... .+||+|++-
T Consensus 105 An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~-~~~IDyd~~~~~a~~~kPklIi~G 183 (463)
T d2a7va1 105 ANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPK-TGLIDYNQLALTARLFRPRLIIAG 183 (463)
T ss_dssp HHHHHHHHHCCSCEECCC-------------------------------CCBCTT-TCSBCHHHHHHHHHHHCCSEEEEC
T ss_pred HHHHHHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCC-CCcCcHHHHHHHHhhcCCceEEec
Confidence 66778999999999999877665544311 11222 24455555543 45699999999875 589998874
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeE
Q 012095 236 SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 315 (471)
Q Consensus 236 ~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~ 315 (471)
.-.+|- .++ ++++.++|++. +.+|+.|-+|......+...++..... .++..|..|+| +|-|-|.+.
T Consensus 184 ~S~y~r--~~d---~~~~reIad~v-ga~l~~D~aH~aGLIA~g~~~sP~~~a-----Dvvt~tTHKTl--rGPrgGiIl 250 (463)
T d2a7va1 184 TSAYAR--LID---YARMREVCDEV-KAHLLADMAHISGLVAAKVIPSPFKHA-----DIVTTTTHKTL--RGARSGLIF 250 (463)
T ss_dssp CSSCCS--CCC---HHHHHHHHHHT-TCEEEEECGGGHHHHHTTSSCCGGGTC-----SEEEEESSGGG--CSCSCEEEE
T ss_pred cccccc--ccC---HHHHHHHhhcc-cceEEechhhhhHHhhhhhhcChhhhh-----hhhhchhhhhh--cCCCceEEE
Confidence 444433 456 88889999998 999999999874333232333333322 28888999997 788999998
Q ss_pred cCH---------------HHHHHHHHHHhcccCCCChHHHHHHHH-HHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCC
Q 012095 316 GPK---------------HFVAACNKIQSQFTSGASSISQKAGVA-ALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE 379 (471)
Q Consensus 316 ~~~---------------~~i~~l~~~~~~~~~~~~~~~q~aa~~-~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 379 (471)
+++ ++.+++.+..-+...+.+-+.+.++.+ ++.+. .....++..++..++.+.|.+.|.+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea--~~~~fk~Ya~qVv~NAk~La~~L~~~- 327 (463)
T d2a7va1 251 YRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQA--CTPMFREYSLQVLKNARAMADALLER- 327 (463)
T ss_dssp EECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred EcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHhC-
Confidence 865 567778776555444444444444333 33321 12335566677778888888888887
Q ss_pred CCeee-CCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC-----CCCcEEEEeec------C
Q 012095 380 GVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-----DDTCIRISYAA------S 447 (471)
Q Consensus 380 g~~~~-~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~-----~~~~iRis~~~------~ 447 (471)
|+.+. ....+..+++++... + .+. ..++..|++.||.+.--..++ .+..|||.... .
T Consensus 328 G~~vv~ggTdnHlvlvdl~~~-~---------~~G-~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG~~ 396 (463)
T d2a7va1 328 GYSLVSGGTDNHLVLVDLRPK-G---------LDG-ARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFR 396 (463)
T ss_dssp TCEEGGGSCSSSEEEEECTTT-T---------CCH-HHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCC
T ss_pred CCeeecCCCCCceeeeecccc-C---------CCH-HHHHHHHHhccCccCCccCCCCCCCCCCCceEeCCHHHHhCCCC
Confidence 88875 334466788888542 1 144 445556778899876433222 24579998764 6
Q ss_pred HHHHHHHHHHHHHHHH
Q 012095 448 LTTLQAAVERIKKGLL 463 (471)
Q Consensus 448 ~e~i~~~~~~l~~~l~ 463 (471)
++++++..+-|.+++.
T Consensus 397 e~dm~~iA~~I~~~l~ 412 (463)
T d2a7va1 397 EDDFRRVVDFIDEGVN 412 (463)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6889998888888764
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.63 E-value=7.1e-14 Score=136.86 Aligned_cols=337 Identities=15% Similarity=0.107 Sum_probs=221.5
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCC-C------CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcE-EEeCChHHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGF-T------RYTPNAGTLELRSAICHKLKEENGLSYTPDQI-LVSNGAKQS 167 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~-~------~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i-~it~G~~~a 167 (471)
..|.|-..++-. ++.+.+++...+.+.. . .|+...-+.++.....++..+.||.+.+.+.+ +-..+++.|
T Consensus 32 ~~l~LIaSEN~~--S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~A 109 (470)
T d1rv3a_ 32 VGLELIASENFA--SRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPA 109 (470)
T ss_dssp SSEECCTTCCCC--CHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHH
T ss_pred cCceEecCCCcC--CHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccH
Confidence 468888888763 5677777776665422 1 23333334556666667777888854333333 233456666
Q ss_pred HHHHHHHhcCCCCeEEEcCCCCCChHH----------HHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc-cCCcEEEEcC
Q 012095 168 ILQAVLAVCSPGDEVIIPAPFWVSYPE----------MARIADATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCS 236 (471)
Q Consensus 168 l~~~~~~l~~~gd~Vlv~~p~y~~~~~----------~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~-~~~~~i~i~~ 236 (471)
...++.+|++|||+|+..+....++.. .+.....+.+.+++++++ +.+|.+++++... .+||+|++-.
T Consensus 110 n~av~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~-~~IDyd~l~~~a~~~kPklIi~G~ 188 (470)
T d1rv3a_ 110 NFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDT-GYIDYDRLEENARLFHPKLIIAGT 188 (470)
T ss_dssp HHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTT-CSBCHHHHHHHHHHHCCSEEEECC
T ss_pred HHHHHHHhcCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEeccc-CcccHHHHHHHHHhhCcceEeech
Confidence 777899999999999987765443321 122233678889988654 5699999999875 5899888744
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCc-cccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeE
Q 012095 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 315 (471)
Q Consensus 237 p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~ 315 (471)
-.+| ..++ ++++.++|.+. +.+|+.|-+|.. |+.++. .++..... .|+..|..|+| +|-|-|.+.
T Consensus 189 S~y~--r~~d---~~~~reIad~v-ga~l~~D~aH~aGLIA~g~-~~sPl~~a-----Dvvt~tTHKtl--rGPrgGiI~ 254 (470)
T d1rv3a_ 189 SCYS--RNLD---YGRLRKIADEN-GAYLMADMAHISGLVVAGV-VPSPFEHC-----HVVTTTTHKTL--RGCRAGMIF 254 (470)
T ss_dssp SSCC--SCCC---HHHHHHHHHHT-TCEEEEECTTTHHHHHHTS-SCCGGGTC-----SEEEEESSGGG--CCCSCEEEE
T ss_pred hhcc--ccCC---HHHHHHHHhcc-CCeEEecchhhhhhccccc-cCChhhee-----eeeeeehhhhc--cCCcceEEE
Confidence 4443 3456 88888999999 999999999874 333333 23332221 38999999997 688889998
Q ss_pred cCH---------------HHHHHHHHHHhcccCCCChHHHHHHHH-HHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCC
Q 012095 316 GPK---------------HFVAACNKIQSQFTSGASSISQKAGVA-ALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE 379 (471)
Q Consensus 316 ~~~---------------~~i~~l~~~~~~~~~~~~~~~q~aa~~-~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 379 (471)
+++ ++.+++.+..-+...+.+-..+.|+.+ ++.+. ......+..+...++.+.|.+.|.+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea--~~~~fk~Ya~qvv~NAk~La~~L~~~- 331 (470)
T d1rv3a_ 255 YRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQA--MTPEFKEYQRQVVANCRALSAALVEL- 331 (470)
T ss_dssp EECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred EccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 765 377777776555444444444444433 34331 12345667777888888999999887
Q ss_pred CCeee-CCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEE----CCCCC-CCCCcEEEEeec------C
Q 012095 380 GVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV----PGDAF-GDDTCIRISYAA------S 447 (471)
Q Consensus 380 g~~~~-~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~----pg~~f-~~~~~iRis~~~------~ 447 (471)
|+.+. ....+..+++++... + .+.. .++++|++.||.+. |+... ..+..|||.... .
T Consensus 332 G~~v~~ggTdnHlvlvdl~~~-g---------~~g~-~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~alTtrG~~ 400 (470)
T d1rv3a_ 332 GYKIVTGGSDNHLILVDLRSK-G---------TDGG-RAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLL 400 (470)
T ss_dssp TCEEGGGSCSSSEEEEEGGGG-T---------CCHH-HHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCC
T ss_pred CceeccCCCCCceEEEeeccc-C---------CcHH-HHHHHHHHcCcEECCCcCCCCCCCCCCCeeEecCHHHHhCCCC
Confidence 88775 334456678888542 1 1444 45556788899875 44321 124679998753 6
Q ss_pred HHHHHHHHHHHHHHHH
Q 012095 448 LTTLQAAVERIKKGLL 463 (471)
Q Consensus 448 ~e~i~~~~~~l~~~l~ 463 (471)
++++++..+-|.++++
T Consensus 401 e~dm~~iA~~I~~~l~ 416 (470)
T d1rv3a_ 401 EKDFQKVAHFIHRGIE 416 (470)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7899998888888774
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.61 E-value=9.1e-15 Score=146.96 Aligned_cols=339 Identities=10% Similarity=-0.019 Sum_probs=195.5
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcC----CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCCh
Q 012095 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREG----FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 164 (471)
Q Consensus 92 ~~g~~~i~l~~g~--~~~~~-p~~v~~a~~~~~~~~----~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~ 164 (471)
..|+++||+..|. ..++. ++.+.+++.+++... ...+ .......+.+.+++.+....+. ..+.+++++++
T Consensus 50 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~-~~~~~~~~a~~lae~l~~~~~~--~~~~v~f~~sG 126 (461)
T d1ohwa_ 50 VDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPAL-GILPPENFVEKLRESLLSVAPK--GMSQLITMACG 126 (461)
T ss_dssp TTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCT-TTSCBTTHHHHHHHTGGGGCCT--TCCEEEEESSH
T ss_pred CCCCEEEEcccCHHHHhhcCCcHHHHHHHHHHHhhhhhcccccc-cccchHHHHHHHHHHHHhhhcc--Ccceeeeecch
Confidence 3688899998765 33443 678888888765431 1111 1222345667777776543332 34689999999
Q ss_pred HHHHHHHHHHhc----------------------------CCCCeEEEcCCCCCChHHHHHHcCCE------------EE
Q 012095 165 KQSILQAVLAVC----------------------------SPGDEVIIPAPFWVSYPEMARIADAT------------PV 204 (471)
Q Consensus 165 ~~al~~~~~~l~----------------------------~~gd~Vlv~~p~y~~~~~~~~~~G~~------------~~ 204 (471)
+++...+++... .+...|+....+|++....+...... ..
T Consensus 127 seAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~ 206 (461)
T d1ohwa_ 127 SCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWP 206 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCC
T ss_pred hhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccCCc
Confidence 999998887642 12346888888888754433322211 00
Q ss_pred EecCCCC-CCC-----------cCCHHHHHhhhc------cCCcEEEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCeEE
Q 012095 205 ILPTRIS-ENF-----------LLDPKVLESKLT------EKSRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLV 265 (471)
Q Consensus 205 ~v~~~~~-~~~-----------~ld~e~l~~~l~------~~~~~i~i~~p~NPtG-~~~~~~~l~~i~~l~~~~~~~~i 265 (471)
..+.... ..+ ..+.+.+++.+. .+..+|++..-+...| ...+++.+++|.++|++| |+++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~-gill 285 (461)
T d1ohwa_ 207 IAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKH-GCAF 285 (461)
T ss_dssp EECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHT-TCEE
T ss_pred ccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhh-Ccce
Confidence 1111000 000 012344555442 2334555544344445 568899999999999999 9999
Q ss_pred EEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHHHHHHHHhcccCCCChHHHHHHHH
Q 012095 266 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVA 345 (471)
Q Consensus 266 i~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~ 345 (471)
|.||++..+.-.|. ...+....-.....|+ +++|.++ . |++.....+.. ........+++.++++..++.+
T Consensus 286 I~DEV~tG~gRtG~-~~~~e~~gi~~~PDiv--~~gK~l~-~----g~~~~~~~~~~-~~~~~~~~T~~g~p~~~aaa~a 356 (461)
T d1ohwa_ 286 LVDEVQTGGGSTGK-FWAHEHWGLDDPADVM--TFSKKMM-T----GGFFHKEEFRP-NAPYRIFNTWLGDPSKNLLLAE 356 (461)
T ss_dssp EEECTTTCSSTTSS-SSGGGGGCCSSCCSEE--EECGGGS-S----EEEEECGGGSC-SSTTSSCCSCSSCHHHHHHHHH
T ss_pred eccccccccccccc-cccccccccccCchhh--hhhhccc-c----ccccccccccc-ccccccccccccccccchhhcc
Confidence 99999988743332 1122111111012233 5889986 3 34333332211 1112234466788899888888
Q ss_pred HHhccCCChHHHHHHHHHHHHHHHHHHHHhcC----CCC-CeeeCCCcceEEeEecCCccCCcccCCCCCCCHHHHHHHH
Q 012095 346 ALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE----LEG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYL 420 (471)
Q Consensus 346 ~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~----~~g-~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 420 (471)
.|+.- ++ +.+.+..++.-+++.+.|.+ .|. +.-+... |+++-+.+++. ....++++.|
T Consensus 357 ~l~~i---~~--~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG~-Gl~~~ie~~~~-----------~~~~~i~~~~ 419 (461)
T d1ohwa_ 357 VINII---KR--EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGR-GTFCSFDTPDE-----------SIRNKLISIA 419 (461)
T ss_dssp HHHHH---HH--TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEE-TTEEEEECSSH-----------HHHHHHHHHH
T ss_pred cchhh---hh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEeeee-eEEEEEEcCCH-----------HHHHHHHHHH
Confidence 88741 11 12222333333333333333 333 2222223 44466777643 1356788888
Q ss_pred HHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012095 421 LDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 421 l~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~ 465 (471)
+++ ||++.+.. ++.|||.... +++++++++++|.+++.++
T Consensus 420 ~~~-Gll~~~~~----~~~ir~~PpL~it~~eid~~~~~l~~~l~ef 461 (461)
T d1ohwa_ 420 RNK-GVMLGGCG----DKSIRFRPTLVFRDHHAHLFLNIFSDILADF 461 (461)
T ss_dssp HHT-TEECEEET----TTEEECCCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred HHC-CeEEeeCC----CCEEEEeCCcCCCHHHHHHHHHHHHHHHhcC
Confidence 876 99987743 4678988654 9999999999999999874
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.52 E-value=1.6e-13 Score=133.61 Aligned_cols=318 Identities=10% Similarity=0.052 Sum_probs=185.3
Q ss_pred ChHHHHHHHHHHHHcCCCC------CC-CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH-HHHHHHhcCCCC
Q 012095 109 TPVLIAEAGINAIREGFTR------YT-PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI-LQAVLAVCSPGD 180 (471)
Q Consensus 109 ~p~~v~~a~~~~~~~~~~~------Y~-~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al-~~~~~~l~~~gd 180 (471)
.|+.|++++.+.+.+-... .+ -..-..++.+.+.+.+++.++.+ +...|++++|++.+. ..+...+..+|+
T Consensus 14 vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~-~~~~i~~~~gs~t~~~ea~~~~l~~~~~ 92 (361)
T d2c0ra1 14 LPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNP-TGYKVLFIQGGASTQFAMIPMNFLKEGQ 92 (361)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCC-SSEEEEEESSHHHHHHHHHHHHHCCTTC
T ss_pred CCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCC-CCCEEEEECCCchHHHHHHHhccccCCC
Confidence 4889999998865331000 00 01123456666777888888853 344788877765544 566667788888
Q ss_pred eEEEcCC-CCC-ChHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCCHHHHHHHHHHHH
Q 012095 181 EVIIPAP-FWV-SYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVA 258 (471)
Q Consensus 181 ~Vlv~~p-~y~-~~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~ 258 (471)
.+++..- .|. .+..+++..|..+..+..+... .++++.+++.+...+ ...+ +|.||...+ +++|.++|+
T Consensus 93 ~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~v---~~~tg~~~~---~~~i~~~~~ 163 (361)
T d2c0ra1 93 TANYVMTGSWASKALKEAKLIGDTHVAASSEASN--YMTLPKLQEIQLQDN-AAYL---HLTSNETIE---GAQFKAFPD 163 (361)
T ss_dssp EEEEEECSHHHHHHHHHHHHHSCEEEEEECGGGT--TCSCCCGGGCCCCTT-EEEE---EEESEETTT---TEECSSCCC
T ss_pred ceEEEeechhhhhhhhhhhhcCceeeeecccccc--ccchhhhhhhcccCc-ceEE---EEeccccee---cceEEEeec
Confidence 8876543 222 2335678899999888876543 367788888766543 3333 567898888 677888999
Q ss_pred hCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHH------------HHHHHH
Q 012095 259 KHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF------------VAACNK 326 (471)
Q Consensus 259 ~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~------------i~~l~~ 326 (471)
++ |+++++|.+.+. +.....+..+ .+.+.|.+|.++++|.-.++ +..+.+ ......
T Consensus 164 ~~-~al~~vDavss~----g~~~id~~~~------di~~~s~~k~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 231 (361)
T d2c0ra1 164 TG-SVPLIGDMSSDI----LSRPFDLNQF------GLVYAGAQKNLGPSGVTVVI-VREDLVAESPKHLPTMLRYDTYVK 231 (361)
T ss_dssp CT-TSCEEEECTTTT----TSSCCCGGGC------SEEEEETTTTTCCSSCEEEE-EEGGGSSSCCTTSCGGGCHHHHHH
T ss_pred cC-CceEEEEeeccc----cccccccccc------eeEEEecccccccccCcEEE-EEhHHhhhCccccccccccccccc
Confidence 99 999999999875 2222222222 25667789999877632222 222211 111111
Q ss_pred HHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCC-eeeC-C--CcceEEeEecCCccCC
Q 012095 327 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV-KMSE-P--QGAFYLFIDFSTYYGS 402 (471)
Q Consensus 327 ~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~-~~~~-p--~~g~~~~~~~~~~~~~ 402 (471)
...... .+++....++..++.... ..........+.++++..+........+. .... + .+..-+.+.+++..
T Consensus 232 ~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~~~~~-- 307 (361)
T d2c0ra1 232 NNSLYN-TPPSFGIYMVNEVLKWIE-ERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEE-- 307 (361)
T ss_dssp TTTCSS-CCCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHH--
T ss_pred cccccc-cccceeeehhhhHHHhhh-hccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccceEEEEECCCcc--
Confidence 111112 222222222222222100 11223344445555555555555543222 1111 1 12334566676542
Q ss_pred cccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012095 403 EAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 403 ~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~ 464 (471)
+..++.+.|. +.||.+..|.. .-+.||||+.. +.|+++++++.|+++.++
T Consensus 308 ---------~~~~~~~~L~-~~GI~~~~G~~--~~g~~RIs~~~~~~~edv~~Lv~~l~~~~~~ 359 (361)
T d2c0ra1 308 ---------LEKEFVKASE-QEGFVGLKGHR--SVGGLRASIYNAVPYESCEALVQFMEHFKRS 359 (361)
T ss_dssp ---------HHHHHHHHHH-HTTEESCBCCT--TTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ---------cHHHHHHHHH-HCCCEEecCCC--cCCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 5667777664 56999988853 22459999987 899999999999998765
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=1.2e-12 Score=126.45 Aligned_cols=331 Identities=11% Similarity=0.014 Sum_probs=184.5
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCC-CCC-----C-CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHHH
Q 012095 97 VIRLAAGEPDFDTPVLIAEAGINAIREGF-TRY-----T-PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (471)
Q Consensus 97 ~i~l~~g~~~~~~p~~v~~a~~~~~~~~~-~~Y-----~-~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 169 (471)
+++|+-|- ...|+.|++++.+.+.+.. .+. + -..-..++.+.+.+.+++.++.+ +...|++++|++++..
T Consensus 2 ~~nF~pGP--~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~-~~~~v~~~~gs~t~~~ 78 (360)
T d1bjna_ 2 IFNFSSGP--AMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVP-SNYKVLFCHGGGRGQF 78 (360)
T ss_dssp CEECCSSS--CCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHHH
T ss_pred eEEeCCCC--cCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCC-CCCEEEEECCchHHHH
Confidence 45554432 2348899999988654310 000 0 01112345666666777777742 3447888888777665
Q ss_pred HHHH-HhcCCCCeEEEcCCCCCCh--HHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCCC
Q 012095 170 QAVL-AVCSPGDEVIIPAPFWVSY--PEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 246 (471)
Q Consensus 170 ~~~~-~l~~~gd~Vlv~~p~y~~~--~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~~ 246 (471)
.+.. .+..+++.+++....+... ...++..|...+.+....+. .++.+.+++.+..+++++++...+|-||...+
T Consensus 79 ~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~v~~~~~~t~~~~~ 156 (360)
T d1bjna_ 79 AAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVD--GLRAVKPMREWQLSDNAAYMHYCPNETIDGIA 156 (360)
T ss_dssp HHHHHHHCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEEEET--TEEEECCGGGCCCCSSCSCEEECSEETTTTEE
T ss_pred hhhhhcccccccccceecccchhhhhHHHHhhcCccceeeccccCC--CcchhhhhhhhccCCceeEEEecccccccCcc
Confidence 5544 4566778887776555432 24455666666666554332 35677777777888888888778888888777
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHH-----
Q 012095 247 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV----- 321 (471)
Q Consensus 247 ~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i----- 321 (471)
. +.+. ++.+ ++++++|.+.+... ..... ++-.+.+.|.+|.++.++ -.|+++..+...
T Consensus 157 ~---~~i~--~~~~-~~~v~vDa~~~~~~----~~vd~------~~~dv~~~ss~k~~~~~~-~~~~~~~~~~~~~~~~~ 219 (360)
T d1bjna_ 157 I---DETP--DFGA-DVVVAADFSSTILS----RPIDV------SRYGVIYAGAQKNIGPAG-LTIVIVREDLLGKANIA 219 (360)
T ss_dssp C---CCCC--CCCT-TCCEEEECTTTTTS----SCCCG------GGCSEEEEETTTTTSSTT-CEEEEEEGGGCSCCCTT
T ss_pred c---ccee--cccc-cceeeeeeeccccc----eeeee------ccceeEEEEcccccccCC-CceeEeeehhhhhcccc
Confidence 3 3332 3455 88899998776421 11111 123377888899997554 334444332211
Q ss_pred -------HHHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCC---CcceE
Q 012095 322 -------AACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP---QGAFY 391 (471)
Q Consensus 322 -------~~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p---~~g~~ 391 (471)
.............+......+....+... .........++.++...++.+.+....+..+..+ .....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v 297 (360)
T d1bjna_ 220 CPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLK--ANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMN 297 (360)
T ss_dssp SCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSE
T ss_pred CCcchhhHHHHhhhhhccccccchHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccccceE
Confidence 11111112122222222222222222110 1223444445555555555555544422222211 12233
Q ss_pred EeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012095 392 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~~ 465 (471)
+.+.+|+.. +..++.+.|.+ .||.+..|.. .-+.||+|+.. ++|+++++++.|+++.++.
T Consensus 298 ~~f~~~~~~-----------~~~~~~~~l~~-~Gi~~~~G~~--~~g~~Ris~~~~~t~edV~~li~~l~e~~~~~ 359 (360)
T d1bjna_ 298 VPFQLADSA-----------LDKLFLEESFA-AGLHALKGHR--VVGGMRASIYNAMPLEGVKALTDFMVEFERRH 359 (360)
T ss_dssp EEEEESSGG-----------GHHHHHHHHHH-TTEECCBCCT--TTCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCcc-----------cHHHHHHHHHH-CCCEeecCCC--ccCeEEEEecCCCCHHHHHHHHHHHHHHHHHc
Confidence 556777542 56778876655 5999888742 22459999976 8999999999999987653
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.31 E-value=2.1e-10 Score=112.56 Aligned_cols=340 Identities=16% Similarity=0.206 Sum_probs=209.2
Q ss_pred HHHHHHHHHHhcCC--CeEEcCCCCCCCCChHHHHHHHHH-HHHcCCCCCCC--CCCCHHHHHHHHHHHHHHhCCCCCCC
Q 012095 82 AITDQATALAQAGV--SVIRLAAGEPDFDTPVLIAEAGIN-AIREGFTRYTP--NAGTLELRSAICHKLKEENGLSYTPD 156 (471)
Q Consensus 82 ~~~~~~~~~~~~g~--~~i~l~~g~~~~~~p~~v~~a~~~-~~~~~~~~Y~~--~~G~~~lr~~ia~~~~~~~g~~~~~~ 156 (471)
++.....++.++.. +.-.++.|..+.-.|+.+.+.+.+ .+-...+-|.| .+|..++.-.+..++.+..|++ .-
T Consensus 49 e~~r~~~~ls~kN~~~~~~fig~G~~~~~~p~~i~~~~~~~~~~t~ytPyqpE~sQG~Lq~l~e~q~~l~eltGmd--~~ 126 (437)
T d1wyua1 49 KVLEELRRLAAQNLPAHKAFLGGGVRSHHVPPVVQALAARGEFLTAYTPYQPEVSQGVLQATFEYQTMIAELAGLE--IA 126 (437)
T ss_dssp HHHHHHHHHHHTSCCCTTCCCCSSCCCCCCCHHHHHHHTSHHHHHCCSCCSGGGCHHHHHHHHHHHHHHHHHHTSS--EE
T ss_pred HHHHHHHHHHhCCCCcCccccCcccCCceeCHHHHHHHhChhhhhhCCCcchHHHHHHHHHHHHHHHHHHHhhCCC--cc
Confidence 44444455544432 222355666665567666443221 11122334443 4777787778888888888864 33
Q ss_pred cEEEeCChHHHHHHHHHHhc-CCCCeEEEcCCCCCChHHH----HHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcE
Q 012095 157 QILVSNGAKQSILQAVLAVC-SPGDEVIIPAPFWVSYPEM----ARIADATPVILPTRISENFLLDPKVLESKLTEKSRL 231 (471)
Q Consensus 157 ~i~it~G~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~----~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~ 231 (471)
+.-.-.|++.....++.+.. ...+.++++.-.++.+... ++..|.+++.++.+... .+.++ +.+++.+
T Consensus 127 n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~~~---~~~~~----~~~~~Aa 199 (437)
T d1wyua1 127 NASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGR---TPLPE----VGEEVGA 199 (437)
T ss_dssp CSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTB---CCCCC----CCTTEEE
T ss_pred ccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhcccceeeEEeeeccccc---chhhh----hccceeE
Confidence 45555677777665554432 2457899999898877654 56789999999976322 23222 5678899
Q ss_pred EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccC----cc
Q 012095 232 LILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA----MT 307 (471)
Q Consensus 232 i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g----~~ 307 (471)
|++.+||. .|..-+ +++|.+++++. +.+++.| +.- +...+- .-+++.+-.|++++ +|.|| ..
T Consensus 200 vmi~~Pnt-~G~~ed---~~~i~~~~h~~-G~l~~~~-ad~-~al~~l------~~Pg~~GaDi~~g~-~q~fg~p~g~G 265 (437)
T d1wyua1 200 VVVQNPNF-LGALED---LGPFAEAAHGA-GALFVAV-ADP-LSLGVL------KPPGAYGADIAVGD-GQSLGLPMGFG 265 (437)
T ss_dssp EEEESSCT-TSBCCC---HHHHHHHHHHT-TCEEEEE-CCT-TGGGTB------CCHHHHTCSEEEEE-CTTTTCCCGGG
T ss_pred EEEccccc-cccccc---hHHHHHHhhhc-cceEEee-ech-hhhhcc------ccccccccceEeec-cceeccccCCC
Confidence 99999965 787755 88999999998 8877755 322 111111 11112233366666 66554 23
Q ss_pred chhheeeEcCHHHHHHH----------------------------HHHHhcccCCCChHHH--HHHHHHHhccCCChHHH
Q 012095 308 GWRLGYIAGPKHFVAAC----------------------------NKIQSQFTSGASSISQ--KAGVAALGLGYAGGEVV 357 (471)
Q Consensus 308 G~R~G~v~~~~~~i~~l----------------------------~~~~~~~~~~~~~~~q--~aa~~~L~~~~~~~~~~ 357 (471)
|--.|++.+.+++.+.+ ++.+...+.|.+.... .++..+... ..+.+
T Consensus 266 GP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~l---G~~GL 342 (437)
T d1wyua1 266 GPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAAL---GPEGL 342 (437)
T ss_dssp CSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHH---HHHHH
T ss_pred cCccccccccchhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhc---CcccH
Confidence 34467777777665543 2222233344443332 222222223 35778
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCeeeCCCcceE--EeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEE-ECCCCC
Q 012095 358 SKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY--LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL-VPGDAF 434 (471)
Q Consensus 358 ~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v-~pg~~f 434 (471)
+++.+....+..++.+.|.+++|+....+. .+| +.++++. +..++.++|+++ |+.. .+-..+
T Consensus 343 ~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~-~~f~ef~v~~~~-------------~~~~i~k~L~d~-G~~~~~~~~~~ 407 (437)
T d1wyua1 343 REVALKSVEMAHKLHALLLEVPGVRPFTPK-PFFNEFALALPK-------------DPEAVRRALAER-GFHGATPVPRE 407 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTCEECSCS-SBCSEEEEECSS-------------CHHHHHHHHHHT-TCCCCEECCTT
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCeeccCCC-CeeeEEEEECCC-------------CHHHHHHHHHhC-CCCCCcccccC
Confidence 888889999999999999999898865443 343 2344432 678999999876 7642 111112
Q ss_pred CCCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012095 435 GDDTCIRISYAA--SLTTLQAAVERIKKGL 462 (471)
Q Consensus 435 ~~~~~iRis~~~--~~e~i~~~~~~l~~~l 462 (471)
..++.+.+++.. +.++|+++++.|++++
T Consensus 408 ~~~~~lli~~TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 408 YGENLALFAATELHEEEDLLALREALKEVL 437 (437)
T ss_dssp SCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 346789999985 8899999999998763
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.27 E-value=5.6e-11 Score=114.88 Aligned_cols=329 Identities=11% Similarity=0.007 Sum_probs=174.7
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCC--CCCC-----CCCCCHHHHHHHHHHHHHHhCCCCCCCcEEEeCChHHHH
Q 012095 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGF--TRYT-----PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (471)
Q Consensus 96 ~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~--~~Y~-----~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 168 (471)
.+.+|+.|-.. .|++|.+++.+.+.+-. ..+. -++-..++-+.+.+.+++.++.+ +...|++++|++++.
T Consensus 3 ~~~nF~pGP~~--~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~-~~~~i~~~~gt~~~~ 79 (360)
T d1w23a_ 3 QVFNFNAGPSA--LPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIP-NDYQILFLQGGASLQ 79 (360)
T ss_dssp CCEECCSSSCC--CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHH
T ss_pred ceeEeCCCCcC--CCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCC-CCCEEEEeCCcHHHH
Confidence 35566665433 47899999988653200 0000 00112334455566666666743 334788889988777
Q ss_pred HHHHHH-hcCCCCeEEEcCCCCCC--hHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhccCCcEEEEcCCCCCcccCC
Q 012095 169 LQAVLA-VCSPGDEVIIPAPFWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245 (471)
Q Consensus 169 ~~~~~~-l~~~gd~Vlv~~p~y~~--~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~~~~~~i~i~~p~NPtG~~~ 245 (471)
..+... +..+++.|++....+.+ +...+...+...+......... ..++.++..... .....+ .|-||...
T Consensus 80 ~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~---~~~tg~~~ 153 (360)
T d1w23a_ 80 FTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKANSY--QSIPDFSEFQLN-ENDAYL---HITSNNTI 153 (360)
T ss_dssp HHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECGGGTS--CSCCCGGGCCCC-TTEEEE---EEESEETT
T ss_pred HHHHHhhhcccCcccceeeccchhhhhHHHHHHhhhcceeeccccccc--cchhhhhhcccc-ccccee---EecCCccc
Confidence 655544 45567777766543322 2344556666665555432221 344445444332 233332 45589999
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCccchhheeeEcCHHHHH---
Q 012095 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA--- 322 (471)
Q Consensus 246 ~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~v~~~~~~i~--- 322 (471)
+ +++|.++|+++ |+++|+|.+.+.. .....+..+ + +.+.+++|.++.+| -.|+++..+...+
T Consensus 154 ~---~~~i~~~~~~~-g~l~ivDavqs~g----~~~id~~~~----~--vd~~~~~~~k~~~~-~~~~~~~~~~~~~~~~ 218 (360)
T d1w23a_ 154 Y---GTQYQNFPEIN-HAPLIADMSSDIL----SRPLKVNQF----G--MIYAGAQKNLGPSG-VTVVIVKKDLLNTKVE 218 (360)
T ss_dssp T---TEECSSCCCCC-SSCEEEECTTTTT----SSCCCGGGC----S--EEEEETTTTTSCTT-CEEEEEEHHHHCSCCT
T ss_pred c---ceeeeeccccc-eeeEEeecccccc----ccccccccc----c--ceEEeeccccccCC-cceeeEechhhhcccc
Confidence 8 77889999999 9999999998752 222222222 2 56667888876554 3444443322111
Q ss_pred ---------HHHHHHhcccCCCChHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeC----CCcc
Q 012095 323 ---------ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE----PQGA 389 (471)
Q Consensus 323 ---------~l~~~~~~~~~~~~~~~q~aa~~~L~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~----p~~g 389 (471)
.... .......+......+....+.... ..........+.+..+................. ..+.
T Consensus 219 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~ 296 (360)
T d1w23a_ 219 QVPTMLQYATHIK-SDSLYNTPPTFSIYMLRNVLDWIK-DLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSL 296 (360)
T ss_dssp TCCGGGCHHHHHH-TTTCSSCCCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCS
T ss_pred cCCcchhhhhhhh-hhhhcccccceeeechhHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCChhhcce
Confidence 1111 111222233333322222222100 011122233333333333333333322222211 1122
Q ss_pred eEEeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012095 390 FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLT 464 (471)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~i~~~~~~l~~~l~~ 464 (471)
..+.+++++.. +..++...|.+ +||.+..|... -+.+|+|+.. +.|+++++++.|.++.+.
T Consensus 297 ~vvsf~i~~~~-----------~~~~~~~~l~~-~GI~~~~G~~~--~ggiRiS~~~~~t~e~V~~Li~~~~~~~~~ 359 (360)
T d1w23a_ 297 MNVTFNLRNEE-----------LNQQFLAKAKE-QGFVGLNGHRS--VGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp SEEEEECSSHH-----------HHHHHHHHHHH-TTEESCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCc-----------cHHHHHHHHHH-CCCeeeeCCCc--cCcEEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence 34566776532 45678876655 59998887532 2459999876 899999999999988654
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=99.21 E-value=2e-09 Score=106.67 Aligned_cols=348 Identities=16% Similarity=0.128 Sum_probs=203.2
Q ss_pred HHHHHHHHHHhcCC----CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCC---CCCCHHHHHHHHHHHHHHhCCCCC
Q 012095 82 AITDQATALAQAGV----SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP---NAGTLELRSAICHKLKEENGLSYT 154 (471)
Q Consensus 82 ~~~~~~~~~~~~g~----~~i~l~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~---~~G~~~lr~~ia~~~~~~~g~~~~ 154 (471)
++......+..++. ..+-++.+..-+ +|.+.+.+.+- -...+=|.| ++|..+..=.....+.+..|+++
T Consensus 48 El~r~~~~la~kN~~~~~~~~~lG~~~~hy--~P~v~~~~~~~-~TaYTPYQPaEiSQG~LQalfEfQtmi~eLTGMdv- 123 (471)
T d1wyub1 48 TLVRHYTGLSRRQVGVDTTFYPLGSCTMKY--NPKLHEEAARL-FADLHPYQDPRTAQGALRLMWELGEYLKALTGMDA- 123 (471)
T ss_dssp HHHHHHHHHHTTCCCTTTSCCCBTTTCCCC--CCHHHHHHHHT-TSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE-
T ss_pred HHHHHHHHHHhCCCCccccccCCccccCcc--CcchhhhHHHH-HhccCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCc-
Confidence 44444455554432 344445443323 34455555432 122344554 45655555555556666668653
Q ss_pred CCcEEEeCChHHHHHHHHHHhc---CCC----CeEEEcCCCCCC-hHHHHHHcCCEEEEecCCCCCCCcCCHHHHHhhhc
Q 012095 155 PDQILVSNGAKQSILQAVLAVC---SPG----DEVIIPAPFWVS-YPEMARIADATPVILPTRISENFLLDPKVLESKLT 226 (471)
Q Consensus 155 ~~~i~it~G~~~al~~~~~~l~---~~g----d~Vlv~~p~y~~-~~~~~~~~G~~~~~v~~~~~~~~~ld~e~l~~~l~ 226 (471)
-|.-+-.|++.....++++.. +.| ..+++..+.+.. +.......+..++.++.+. ....+.+.+.....
T Consensus 124 -aNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 200 (471)
T d1wyub1 124 -ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGP--EGEVDLEALKRELG 200 (471)
T ss_dssp -EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCT--TSSBCHHHHHHHCS
T ss_pred -cccccchHHHHHHHHHHHHHHHhhhcccccccccccCCcccccceeeeeecccceeecccccc--cccccchhhhhhhh
Confidence 355555677766554444331 122 234444555544 4455667788888888653 34579999999888
Q ss_pred cCCcEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEEccCCCccccCCCCccccccCCCCCCceEEEecCCcccCc
Q 012095 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (471)
Q Consensus 227 ~~~~~i~i~~p~NPtG~~~~~~~l~~i~~l~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~ 306 (471)
.++.++++.+|++..+..-. .+++.++++++ +..+++|-+-......-...+ . ....+++....+.||.
T Consensus 201 ~~~a~v~v~~p~~~g~~e~~---~~~~~~~~h~~-g~~~~~~~~~~~~~~~l~~p~---~----~g~div~vg~~q~~G~ 269 (471)
T d1wyub1 201 PHVAALMLTNPNTLGLFERR---ILEISRLCKEA-GVQLYYDGANLNAIMGWARPG---D----MGFDVVHLNLHKTFTV 269 (471)
T ss_dssp TTEEEEEECSSCTTSCCCTT---HHHHHHHHHHH-TCEEEEEGGGGGGTTTTCCHH---H----HTCSEEECCTTTTTCC
T ss_pred ccccceeeccCCCcccccch---hhhhHHHHHhc-cccccccccchhhhhhccccC---c----cccccccccccccccc
Confidence 88889999999987665544 67788888887 666666644332211101010 1 1122444444454433
Q ss_pred ----cchhheeeEcCHHHHHHHH-------------------HHHhcccCCCCh-HHHHHHHHHHhccCCChHHHHHHHH
Q 012095 307 ----TGWRLGYIAGPKHFVAACN-------------------KIQSQFTSGASS-ISQKAGVAALGLGYAGGEVVSKMVK 362 (471)
Q Consensus 307 ----~G~R~G~v~~~~~~i~~l~-------------------~~~~~~~~~~~~-~~q~aa~~~L~~~~~~~~~~~~~~~ 362 (471)
.|--+|++.+.+++++.+- .+++. ..|.+. +...++..++.. ...+.++++.+
T Consensus 270 P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe-~actnqaL~al~A~vYlsl--lG~~GL~elA~ 346 (471)
T d1wyub1 270 PHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRV-RSFYGNFLALVRAWAYIRT--LGLEGLKKAAA 346 (471)
T ss_dssp CCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCS-SSTTSCHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred ccccccccccceeehhhhhccCCCceecCCCccccccCCCcccccch-hhhhhhHHHHHHHHHHHHH--hCchhHHHHHH
Confidence 4555788888888777651 11111 223442 222223223322 13678899999
Q ss_pred HHHHHHHHHHHHhcCCCCCeeeCCCcceE--EeEecCCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC--CCC
Q 012095 363 AFRERRDFLVKSFGELEGVKMSEPQGAFY--LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--DDT 438 (471)
Q Consensus 363 ~~~~~r~~l~~~L~~~~g~~~~~p~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~~gV~v~pg~~f~--~~~ 438 (471)
...++..++.+.|+. +|+++. ..+.|| +.++++.. .+..++.++|+++ |+.- +...|. .++
T Consensus 347 ~~~~~A~Yla~~L~~-~G~~~~-~~~~ff~EFvv~~~~~-----------~~~~~i~k~L~~~-G~~~-~~~~~p~~~~~ 411 (471)
T d1wyub1 347 LAVLNARYLKELLKE-KGYRVP-YDGPSMHEFVAQPPEG-----------FRALDLAKGLLEL-GFHP-PTVYFPLIVKE 411 (471)
T ss_dssp HHHHHHHHHHHHHHH-TTCBCS-SCSSCCSCEEEBCSTT-----------CCHHHHHHHHHHT-TCCC-CEESCSTTSTT
T ss_pred HHHHHHHHHHHHHhh-cCceec-cCcceeeEEeecCCCC-----------CCHHHHHHHHHHc-CCCC-CcccCcCCCCC
Confidence 999999999999976 588874 334443 23445543 2677899999986 7642 222332 356
Q ss_pred cEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012095 439 CIRISYAA--SLTTLQAAVERIKKGLLTL 465 (471)
Q Consensus 439 ~iRis~~~--~~e~i~~~~~~l~~~l~~~ 465 (471)
.+-++... ++++|+.+++.|++++++.
T Consensus 412 ~llv~vTE~~tkedID~lv~aL~~i~~e~ 440 (471)
T d1wyub1 412 ALMVEPTETEAKETLEAFAEAMGALLKKP 440 (471)
T ss_dssp CEEECCCTTSCHHHHHHHHHHHHHHHTSC
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 78888875 8899999999999998763
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