Citrus Sinensis ID: 012103
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 471 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LJM4 | 991 | Receptor-like protein kin | no | no | 0.983 | 0.467 | 0.543 | 1e-136 | |
| Q9SGP2 | 996 | Receptor-like protein kin | no | no | 0.961 | 0.454 | 0.357 | 7e-76 | |
| P47735 | 999 | Receptor-like protein kin | no | no | 0.938 | 0.442 | 0.379 | 2e-71 | |
| C0LGX3 | 993 | LRR receptor-like serine/ | no | no | 0.925 | 0.439 | 0.367 | 3e-68 | |
| O49545 | 1003 | Leucine-rich repeat recep | no | no | 0.940 | 0.441 | 0.345 | 4e-63 | |
| Q9M2Z1 | 1002 | Leucine-rich repeat recep | no | no | 0.940 | 0.442 | 0.330 | 2e-59 | |
| O82318 | 960 | Probably inactive leucine | no | no | 0.949 | 0.465 | 0.321 | 4e-59 | |
| Q9SHI2 | 1101 | Leucine-rich repeat recep | no | no | 0.970 | 0.415 | 0.314 | 3e-57 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.942 | 0.378 | 0.313 | 4e-56 | |
| Q9LHP4 | 1141 | Receptor-like protein kin | no | no | 0.881 | 0.363 | 0.335 | 2e-55 |
| >sp|Q9LJM4|IKU2_ARATH Receptor-like protein kinase HAIKU2 OS=Arabidopsis thaliana GN=IKU2 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 486 bits (1250), Expect = e-136, Method: Compositional matrix adjust.
Identities = 257/473 (54%), Positives = 318/473 (67%), Gaps = 10/473 (2%)
Query: 6 ISLCLLLCLPFFTCINSDELQILLNLKTSLKDSKSS-IFSSWVSNNHFCNFTGITCNSDS 64
+ L L+ L +S+E++ LL LK++ ++KS +F +W N C F GI CNSD
Sbjct: 8 VRLLFLMPLASSRSNHSEEVENLLKLKSTFGETKSDDVFKTWTHRNSACEFAGIVCNSDG 67
Query: 65 SFVQEIELSNRNLKGT--------LPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKL 116
+ V EI L +R+L LPFDSIC L+ L KL LG NSL G+I +L C +L
Sbjct: 68 NVV-EINLGSRSLINRDDDGRFTDLPFDSICDLKLLEKLVLGNNSLRGQIGTNLGKCNRL 126
Query: 117 QYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDP 176
+YLDLG N FSG FP I SL L+ L LN SG SG+FPW SL ++ L LSVGDN F
Sbjct: 127 RYLDLGINNFSGEFPAIDSLQLLEFLSLNASGISGIFPWSSLKDLKRLSFLSVGDNRFGS 186
Query: 177 TPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVK 236
PFP +++ L L W+YL+N SI G+IP I NL L NLELSDN ISGEIP EI L
Sbjct: 187 HPFPREILNLTALQWVYLSNSSITGKIPEGIKNLVRLQNLELSDNQISGEIPKEIVQLKN 246
Query: 237 LWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSG 296
L +LE+Y+N L+GKLP+G RNLTNL NFDAS N LEGDLSE+RFL NLV+L +F+N+ +G
Sbjct: 247 LRQLEIYSNDLTGKLPLGFRNLTNLRNFDASNNSLEGDLSELRFLKNLVSLGMFENRLTG 306
Query: 297 EVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTM 356
E+P E G FK L LSLY N+LTG LP+ LGSW F +IDVSEN L G IPP MCK+G M
Sbjct: 307 EIPKEFGDFKSLAALSLYRNQLTGKLPRRLGSWTAFKYIDVSENFLEGQIPPYMCKKGVM 366
Query: 357 RDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEG 416
LLMLQN+FTG+ P +YA C TL R RVSNNSL G +P+GIWGLP + +D+A N EG
Sbjct: 367 THLLMLQNRFTGQFPESYAKCKTLIRLRVSNNSLSGMIPSGIWGLPNLQFLDLASNYFEG 426
Query: 417 PITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPAS 469
+T DI NAK+L L NR SG LP +IS A SLV + L N+ +G +P S
Sbjct: 427 NLTGDIGNAKSLGSLDLSNNRFSGSLPFQISGANSLVSVNLRMNKFSGIVPES 479
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Modulates the seed size by negatively regulating the cellularization of syncytial endosperm. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|Q9SGP2|HSL1_ARATH Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (728), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 172/481 (35%), Positives = 265/481 (55%), Gaps = 28/481 (5%)
Query: 15 PFFTCINSDELQILLNLKTSLKDSKSSIFSSWVSNNHF-CNFTGITCNSDSSFVQEIELS 73
P +N D IL +K SL D S SSW SN+ C ++G++C D S V ++LS
Sbjct: 11 PTVFSLNQDGF-ILQQVKLSL-DDPDSYLSSWNSNDASPCRWSGVSCAGDFSSVTSVDLS 68
Query: 74 NRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPE- 132
+ NL G P IC+L L LSL NS+ + ++ C LQ LDL N+ +G P+
Sbjct: 69 SANLAGPFP-SVICRLSNLAHLSLYNNSINSTLPLNIAACKSLQTLDLSQNLLTGELPQT 127
Query: 133 ISSLNELQHLYLNLSGFSGVFPWMS-----------------------LGNMTNLVSLSV 169
++ + L HL L + FSG P LGN++ L L++
Sbjct: 128 LADIPTLVHLDLTGNNFSGDIPASFGKFENLEVLSLVYNLLDGTIPPFLGNISTLKMLNL 187
Query: 170 GDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPS 229
NPF P+ P + L L ++LT C + GQIP +G L++L++L+L+ N++ G IP
Sbjct: 188 SYNPFSPSRIPPEFGNLTNLEVMWLTECHLVGQIPDSLGQLSKLVDLDLALNDLVGHIPP 247
Query: 230 EIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQL 289
+G L + ++ELYNN L+G++P L NL +L DAS N L G + + L +L L
Sbjct: 248 SLGGLTNVVQIELYNNSLTGEIPPELGNLKSLRLLDASMNQLTGKIPDELCRVPLESLNL 307
Query: 290 FKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPD 349
++N GE+PA + L + ++ N+LTG LP++LG + ++DVSEN +G +P D
Sbjct: 308 YENNLEGELPASIALSPNLYEIRIFGNRLTGGLPKDLGLNSPLRWLDVSENEFSGDLPAD 367
Query: 350 MCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDI 409
+C +G + +LL++ N F+G IP + A+C +L R R++ N G+VP G WGLP VN++++
Sbjct: 368 LCAKGELEELLIIHNSFSGVIPESLADCRSLTRIRLAYNRFSGSVPTGFWGLPHVNLLEL 427
Query: 410 ALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPAS 469
N G I+K I A L+LL N +G LPEEI +L + + N+ +G +P S
Sbjct: 428 VNNSFSGEISKSIGGASNLSLLILSNNEFTGSLPEEIGSLDNLNQLSASGNKFSGSLPDS 487
Query: 470 I 470
+
Sbjct: 488 L 488
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|P47735|RLK5_ARATH Receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=RLK5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 270 bits (689), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 181/477 (37%), Positives = 260/477 (54%), Gaps = 35/477 (7%)
Query: 24 ELQILLNLKTSLKDSKSSIFSSWVSNNHF--CNFTGITCNSDSSFVQEIELSNRNLKGTL 81
+ IL K L D S+ SSW NN C + G++C++ S+ V ++LS+ L G
Sbjct: 24 DATILRQAKLGLSDPAQSL-SSWSDNNDVTPCKWLGVSCDATSNVVS-VDLSSFMLVG-- 79
Query: 82 PFDSI-CQLQALHKLSLGFNSLYGEISKD-LNNCVKLQYLDLGNNVFSGSFP-------- 131
PF SI C L +LH LSL NS+ G +S D + C L LDL N+ GS P
Sbjct: 80 PFPSILCHLPSLHSLSLYNNSINGSLSADDFDTCHNLISLDLSENLLVGSIPKSLPFNLP 139
Query: 132 -----EIS----------SLNELQHL-YLNLSG--FSGVFPWMSLGNMTNLVSLSVGDNP 173
EIS S E + L LNL+G SG P SLGN+T L L + N
Sbjct: 140 NLKFLEISGNNLSDTIPSSFGEFRKLESLNLAGNFLSGTIP-ASLGNVTTLKELKLAYNL 198
Query: 174 FDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGN 233
F P+ P Q+ L +L L+L C++ G IP + LT L+NL+L+ N ++G IPS I
Sbjct: 199 FSPSQIPSQLGNLTELQVLWLAGCNLVGPIPPSLSRLTSLVNLDLTFNQLTGSIPSWITQ 258
Query: 234 LVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQ 293
L + ++EL+NN SG+LP + N+T L FDAS N L G + + L NL +L LF+N
Sbjct: 259 LKTVEQIELFNNSFSGELPESMGNMTTLKRFDASMNKLTGKIPDNLNLLNLESLNLFENM 318
Query: 294 FSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKR 353
G +P + + K L L L+ N+LTG LP +LG+ + ++D+S N +G IP ++C
Sbjct: 319 LEGPLPESITRSKTLSELKLFNNRLTGVLPSQLGANSPLQYVDLSYNRFSGEIPANVCGE 378
Query: 354 GTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQ 413
G + L+++ N F+GEI C +L R R+SNN L G +P G WGLP +++++++ N
Sbjct: 379 GKLEYLILIDNSFSGEISNNLGKCKSLTRVRLSNNKLSGQIPHGFWGLPRLSLLELSDNS 438
Query: 414 IEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470
G I K I AK L+ L NR SG +P EI ++ I N +G+IP S+
Sbjct: 439 FTGSIPKTIIGAKNLSNLRISKNRFSGSIPNEIGSLNGIIEISGAENDFSGEIPESL 495
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Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates that controls floral organ abscission. May interact with the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) ligands family. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGX3|HSL2_ARATH LRR receptor-like serine/threonine-protein kinase HSL2 OS=Arabidopsis thaliana GN=HSL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 259 bits (662), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 173/471 (36%), Positives = 246/471 (52%), Gaps = 35/471 (7%)
Query: 32 KTSLKDSKSSIFSSWV---SNNHFCNFTGITCN---SDSSFVQEIELSNRNLKGTLPFDS 85
KT L D ++ WV N CN+TGITC+ S V I+LS N+ G P+
Sbjct: 36 KTRLFDPDGNL-QDWVITGDNRSPCNWTGITCHIRKGSSLAVTTIDLSGYNISGGFPY-G 93
Query: 86 ICQLQALHKLSLGFNSLYGEI-SKDLNNCVKLQYLDLGNNVFSGSFPEIS---------- 134
C+++ L ++L N+L G I S L+ C KLQ L L N FSG PE S
Sbjct: 94 FCRIRTLINITLSQNNLNGTIDSAPLSLCSKLQNLILNQNNFSGKLPEFSPEFRKLRVLE 153
Query: 135 ---------------SLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPF 179
L LQ L LN + SG+ P LG +T L L + FDP+P
Sbjct: 154 LESNLFTGEIPQSYGRLTALQVLNLNGNPLSGIVPAF-LGYLTELTRLDLAYISFDPSPI 212
Query: 180 PDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWR 239
P + L+ L L LT+ ++ G+IP I NL L NL+L+ N+++GEIP IG L +++
Sbjct: 213 PSTLGNLSNLTDLRLTHSNLVGEIPDSIMNLVLLENLDLAMNSLTGEIPESIGRLESVYQ 272
Query: 240 LELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVP 299
+ELY+N+LSGKLP + NLT L NFD S N L G+L E L++ L N F+G +P
Sbjct: 273 IELYDNRLSGKLPESIGNLTELRNFDVSQNNLTGELPEKIAALQLISFNLNDNFFTGGLP 332
Query: 300 AELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDL 359
+ LV ++ N TG LP+ LG ++E DVS N +G +PP +C R ++ +
Sbjct: 333 DVVALNPNLVEFKIFNNSFTGTLPRNLGKFSEISEFDVSTNRFSGELPPYLCYRRKLQKI 392
Query: 360 LMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPIT 419
+ N+ +GEIP +Y +C +L R+++N L G VPA W LP + NQ++G I
Sbjct: 393 ITFSNQLSGEIPESYGDCHSLNYIRMADNKLSGEVPARFWELPLTRLELANNNQLQGSIP 452
Query: 420 KDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470
I A+ L+ L N SG +P ++ L VI L+ N G IP+ I
Sbjct: 453 PSISKARHLSQLEISANNFSGVIPVKLCDLRDLRVIDLSRNSFLGSIPSCI 503
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Receptor-like serine/threonine-kinase acting on substrates that controls floral organ abscission. Regulated by the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) family of ligands. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 242 bits (618), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 174/503 (34%), Positives = 257/503 (51%), Gaps = 60/503 (11%)
Query: 24 ELQILLNLKTSLK---DSKSSIFSSWVSNNHFCNFTGITCNSDSSFVQEIELSNRNLKGT 80
E + LL+LKTSL D K+S SSW + FC + G+TC+ V ++LS NL GT
Sbjct: 25 EFRALLSLKTSLTGAGDDKNSPLSSWKVSTSFCTWIGVTCDVSRRHVTSLDLSGLNLSGT 84
Query: 81 LPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISS---- 135
L D + L+ L LSL N + G I ++++ L++L+L NNVF+GSFP EISS
Sbjct: 85 LSPD-VSHLRLLQNLSLAENLISGPIPPEISSLSGLRHLNLSNNVFNGSFPDEISSGLVN 143
Query: 136 ---------------------LNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPF 174
L +L+HL+L + F+G P S G+ + L+V N
Sbjct: 144 LRVLDVYNNNLTGDLPVSVTNLTQLRHLHLGGNYFAGKIP-PSYGSWPVIEYLAVSGNEL 202
Query: 175 DPTPFPDQVVKLNKLNWLYLT--NCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIG 232
P ++ L L LY+ N DG +P EIGNL+EL+ + ++ ++GEIP EIG
Sbjct: 203 -VGKIPPEIGNLTTLRELYIGYYNAFEDG-LPPEIGNLSELVRFDGANCGLTGEIPPEIG 260
Query: 233 NLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDL-SEVRFLTNLVTLQLFK 291
L KL L L N SG L L L++L + D S N G++ + L NL L LF+
Sbjct: 261 KLQKLDTLFLQVNVFSGPLTWELGTLSSLKSMDLSNNMFTGEIPASFAELKNLTLLNLFR 320
Query: 292 NQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMC 351
N+ GE+P +G +L L L+ N TG++PQ+LG + + +D+S N LTG +PP+MC
Sbjct: 321 NKLHGEIPEFIGDLPELEVLQLWENNFTGSIPQKLGENGKLNLVDLSSNKLTGTLPPNMC 380
Query: 352 KRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPE-------- 403
+ L+ L N G IP + C +L R R+ N L G++P G++GLP+
Sbjct: 381 SGNKLETLITLGNFLFGSIPDSLGKCESLTRIRMGENFLNGSIPKGLFGLPKLTQVELQD 440
Query: 404 --------------VNIIDIAL--NQIEGPITKDIENAKALNLLFAEYNRLSGELPEEIS 447
VN+ I+L NQ+ GP+ I N + L + N+ G +P E+
Sbjct: 441 NYLSGELPVAGGVSVNLGQISLSNNQLSGPLPPAIGNFTGVQKLLLDGNKFQGPIPSEVG 500
Query: 448 KATSLVVIKLNNNQLTGKIPASI 470
K L I ++N +G+I I
Sbjct: 501 KLQQLSKIDFSHNLFSGRIAPEI 523
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Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 230 bits (586), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 158/478 (33%), Positives = 250/478 (52%), Gaps = 35/478 (7%)
Query: 24 ELQILLNLKTSLK-DSKSSIFSSWVSNNHFCNFTGITCNSDSSFVQEIELSNRNLKGTLP 82
EL LL+LK+S D S + +SW + FC++TG+TC+ V ++LS NL GTL
Sbjct: 27 ELHALLSLKSSFTIDEHSPLLTSWNLSTTFCSWTGVTCDVSLRHVTSLDLSGLNLSGTLS 86
Query: 83 FDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPE---------- 132
D + L L LSL N + G I ++N +L++L+L NNVF+GSFP+
Sbjct: 87 SD-VAHLPLLQNLSLAANQISGPIPPQISNLYELRHLNLSNNVFNGSFPDELSSGLVNLR 145
Query: 133 ----------------ISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDP 176
+++L +L+HL+L + FSG P + G L L+V N
Sbjct: 146 VLDLYNNNLTGDLPVSLTNLTQLRHLHLGGNYFSGKIP-ATYGTWPVLEYLAVSGNELT- 203
Query: 177 TPFPDQVVKLNKLNWLYLTNC-SIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLV 235
P ++ L L LY+ + + +P EIGNL+EL+ + ++ ++GEIP EIG L
Sbjct: 204 GKIPPEIGNLTTLRELYIGYYNAFENGLPPEIGNLSELVRFDAANCGLTGEIPPEIGKLQ 263
Query: 236 KLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDL-SEVRFLTNLVTLQLFKNQF 294
KL L L N +G + L +++L + D S N G++ + L NL L LF+N+
Sbjct: 264 KLDTLFLQVNAFTGTITQELGLISSLKSMDLSNNMFTGEIPTSFSQLKNLTLLNLFRNKL 323
Query: 295 SGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRG 354
G +P +G+ +L L L+ N TG++PQ+LG +D+S N LTG +PP+MC
Sbjct: 324 YGAIPEFIGEMPELEVLQLWENNFTGSIPQKLGENGRLVILDLSSNKLTGTLPPNMCSGN 383
Query: 355 TMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQI 414
+ L+ L N G IP + C +L R R+ N L G++P ++GLP+++ +++ N +
Sbjct: 384 RLMTLITLGNFLFGSIPDSLGKCESLTRIRMGENFLNGSIPKELFGLPKLSQVELQDNYL 443
Query: 415 EG--PITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470
G PI+ + L + N+LSG LP I + + + L+ N+ +G IP I
Sbjct: 444 TGELPISGGGVSGD-LGQISLSNNQLSGSLPAAIGNLSGVQKLLLDGNKFSGSIPPEI 500
|
Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 229 bits (583), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 155/482 (32%), Positives = 262/482 (54%), Gaps = 35/482 (7%)
Query: 17 FTCINSDELQILLNLKTSLKDSKSSIFS-SWVSNNHFCNFTGITCNSDSSFVQEIELSNR 75
F+C++++EL++LL+ K+S++D + S S+ S N C ++G+ CN+ S V ++LS +
Sbjct: 24 FSCLHANELELLLSFKSSIQDPLKHLSSWSYSSTNDVCLWSGVVCNNISRVVS-LDLSGK 82
Query: 76 NLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDL--NNCVKLQYLDLGNNVFSGSFP-- 131
N+ G + + +L L ++L N+L G I D+ + L+YL+L NN FSGS P
Sbjct: 83 NMSGQILTAATFRLPFLQTINLSNNNLSGPIPHDIFTTSSPSLRYLNLSNNNFSGSIPRG 142
Query: 132 ---------------------EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVG 170
+I + L+ L L + +G P LGN++ L L++
Sbjct: 143 FLPNLYTLDLSNNMFTGEIYNDIGVFSNLRVLDLGGNVLTGHVPGY-LGNLSRLEFLTLA 201
Query: 171 DNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSE 230
N P ++ K+ L W+YL ++ G+IP +IG L+ L +L+L NN+SG IP
Sbjct: 202 SNQLTGG-VPVELGKMKNLKWIYLGYNNLSGEIPYQIGGLSSLNHLDLVYNNLSGPIPPS 260
Query: 231 IGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSE-VRFLTNLVTLQL 289
+G+L KL + LY N+LSG++P + +L NL + D S N L G++ E V + +L L L
Sbjct: 261 LGDLKKLEYMFLYQNKLSGQIPPSIFSLQNLISLDFSDNSLSGEIPELVAQMQSLEILHL 320
Query: 290 FKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPD 349
F N +G++P + +L L L++N+ +G +P LG +D+S N LTG +P
Sbjct: 321 FSNNLTGKIPEGVTSLPRLKVLQLWSNRFSGGIPANLGKHNNLTVLDLSTNNLTGKLPDT 380
Query: 350 MCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDI 409
+C G + L++ N +IP + C +L+R R+ NN G +P G L VN +D+
Sbjct: 381 LCDSGHLTKLILFSNSLDSQIPPSLGMCQSLERVRLQNNGFSGKLPRGFTKLQLVNFLDL 440
Query: 410 ALNQIEGPI-TKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPA 468
+ N ++G I T D+ + L+L N+ GELP + S++ L + L+ N+++G +P
Sbjct: 441 SNNNLQGNINTWDMPQLEMLDL---SVNKFFGELP-DFSRSKRLKKLDLSRNKISGVVPQ 496
Query: 469 SI 470
+
Sbjct: 497 GL 498
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 223 bits (568), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 169/537 (31%), Positives = 252/537 (46%), Gaps = 80/537 (14%)
Query: 10 LLLCLPFFTCINS--DELQILLNLKTSLKDSKSSIFSSWVSNNHFCNFTGITCNSDSSFV 67
++LC F + S +E ++LL K L DS + S +++ CN+TGI C + V
Sbjct: 11 VILCSFSFILVRSLNEEGRVLLEFKAFLNDSNGYLASWNQLDSNPCNWTGIACTHLRT-V 69
Query: 68 QEIELSNRNLKGTL-PFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVF 126
++L+ NL GTL P IC+L L KL++ N + G I +DL+ C L+ LDL N F
Sbjct: 70 TSVDLNGMNLSGTLSPL--ICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRF 127
Query: 127 SGSFP-------------------------EISSLNELQHLYLNLSGFSGVFPWMSLGNM 161
G P +I +L+ LQ L + + +GV P S+ +
Sbjct: 128 HGVIPIQLTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIP-PSMAKL 186
Query: 162 TNLVSLSVGDNPFDPT-----------------------PFPDQVVKLNKLNWLYLTNCS 198
L + G N F P Q+ KL L L L
Sbjct: 187 RQLRIIRAGRNGFSGVIPSEISGCESLKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNR 246
Query: 199 IDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNL 258
+ G+IP +GN++ L L L +N +G IP EIG L K+ RL LY NQL+G++P + NL
Sbjct: 247 LSGEIPPSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNL 306
Query: 259 TNLANFDASTNFLEGDL-SEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNK 317
+ A D S N L G + E + NL L LF+N G +P ELG+ L L L N+
Sbjct: 307 IDAAEIDFSENQLTGFIPKEFGHILNLKLLHLFENILLGPIPRELGELTLLEKLDLSINR 366
Query: 318 LTGALPQEL------------------------GSWAEFDFIDVSENLLTGPIPPDMCKR 353
L G +PQEL G ++ F +D+S N L+GPIP C+
Sbjct: 367 LNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRF 426
Query: 354 GTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQ 413
T+ L + NK +G IP C +L + + +N L G++P ++ L + +++ N
Sbjct: 427 QTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNW 486
Query: 414 IEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470
+ G I+ D+ K L L N +GE+P EI T +V +++NQLTG IP +
Sbjct: 487 LSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKEL 543
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (558), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 164/523 (31%), Positives = 252/523 (48%), Gaps = 79/523 (15%)
Query: 24 ELQILLNLKTSLKDSKSSIFSSW--VSNNHFCNFTGITCNSDS----------------- 64
E++ L + K + + + S W + + CN+TGITC+S
Sbjct: 30 EIEALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITCDSTGHVVSVSLLEKQLEGVLS 89
Query: 65 ------SFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQY 118
+++Q ++L++ + G +P + I +L L++L L N G I + + Y
Sbjct: 90 PAIANLTYLQVLDLTSNSFTGKIPAE-IGKLTELNQLILYLNYFSGSIPSGIWELKNIFY 148
Query: 119 LDLGNNVFSGSFPE----ISSLNELQHLYLNLSG---------------------FSGVF 153
LDL NN+ SG PE SSL + Y NL+G +G
Sbjct: 149 LDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSI 208
Query: 154 PWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTEL 213
P +S+G + NL L + N P L L L LT ++G IP EIGN + L
Sbjct: 209 P-VSIGTLANLTDLDLSGNQL-TGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSL 266
Query: 214 INLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEG 273
+ LEL DN ++G+IP+E+GNLV+L L +Y N+L+ +P L LT L + S N L G
Sbjct: 267 VQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVG 326
Query: 274 DLSE-VRFLTNLVTLQLFKNQF------------------------SGEVPAELGKFKKL 308
+SE + FL +L L L N F SGE+PA+LG L
Sbjct: 327 PISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTNL 386
Query: 309 VNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTG 368
NLS + N LTG +P + + +D+S N +TG IP R + + + +N FTG
Sbjct: 387 RNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGF-GRMNLTFISIGRNHFTG 445
Query: 369 EIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKAL 428
EIP NC L+ V++N+L GT+ I L ++ I+ ++ N + GPI ++I N K L
Sbjct: 446 EIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDL 505
Query: 429 NLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASIY 471
N+L+ N +G +P E+S T L +++ +N L G IP ++
Sbjct: 506 NILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMF 548
|
Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (551), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 150/447 (33%), Positives = 236/447 (52%), Gaps = 32/447 (7%)
Query: 53 CNFTGITCNS--DSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDL 110
N TG S D ++ ++LS+ L G +P+ S+ +L+ L L L N L G+I D+
Sbjct: 115 ANLTGTLPESLGDCLGLKVLDLSSNGLVGDIPW-SLSKLRNLETLILNSNQLTGKIPPDI 173
Query: 111 NNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLSG-FSGVFPWMSLGNMTNLVSLS 168
+ C KL+ L L +N+ +GS P E+ L+ L+ + + + SG P +G+ +NL L
Sbjct: 174 SKCSKLKSLILFDNLLTGSIPTELGKLSGLEVIRIGGNKEISGQIP-SEIGDCSNLTVLG 232
Query: 169 VGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIP 228
+ + P + KL KL L + I G+IP ++GN +EL++L L +N++SG IP
Sbjct: 233 LAETSVSGN-LPSSLGKLKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIP 291
Query: 229 SEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDL----SEVRFL--- 281
EIG L KL +L L+ N L G +P + N +NL D S N L G + + FL
Sbjct: 292 REIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEF 351
Query: 282 ------------------TNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALP 323
++LV LQL KNQ SG +P+ELG KL ++N+L G++P
Sbjct: 352 MISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIP 411
Query: 324 QELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRF 383
L + +D+S N LTG IP + + LL++ N +G IP NC +L R
Sbjct: 412 PGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRL 471
Query: 384 RVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELP 443
R+ N + G +P+GI L ++N +D + N++ G + +I + L ++ N L G LP
Sbjct: 472 RLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLP 531
Query: 444 EEISKATSLVVIKLNNNQLTGKIPASI 470
+S + L V+ ++ NQ +GKIPAS+
Sbjct: 532 NPVSSLSGLQVLDVSANQFSGKIPASL 558
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 471 | ||||||
| 255537884 | 973 | Receptor protein kinase CLAVATA1 precurs | 0.959 | 0.464 | 0.724 | 0.0 | |
| 359492994 | 984 | PREDICTED: receptor-like protein kinase | 0.955 | 0.457 | 0.678 | 1e-176 | |
| 30681482 | 977 | leucine-rich receptor-like protein kinas | 0.974 | 0.469 | 0.647 | 1e-169 | |
| 16118437 | 977 | leucine-rich repeat receptor-like kinase | 0.974 | 0.469 | 0.647 | 1e-169 | |
| 30681478 | 976 | leucine-rich receptor-like protein kinas | 0.974 | 0.470 | 0.647 | 1e-169 | |
| 297843796 | 976 | hypothetical protein ARALYDRAFT_888250 [ | 0.980 | 0.473 | 0.633 | 1e-167 | |
| 356515665 | 983 | PREDICTED: receptor-like protein kinase | 0.949 | 0.454 | 0.627 | 1e-163 | |
| 356507963 | 983 | PREDICTED: receptor-like protein kinase | 0.949 | 0.454 | 0.625 | 1e-162 | |
| 449437264 | 981 | PREDICTED: receptor-like protein kinase | 0.949 | 0.455 | 0.636 | 1e-162 | |
| 359475504 | 975 | PREDICTED: receptor-like protein kinase | 0.951 | 0.459 | 0.621 | 1e-155 |
| >gi|255537884|ref|XP_002510007.1| Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis] gi|223550708|gb|EEF52194.1| Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/453 (72%), Positives = 379/453 (83%), Gaps = 1/453 (0%)
Query: 18 TCINSDELQILLNLKTSLKDSKSSIFSSWVSNNHFCNFTGITCNSDSSFVQEIELSNRNL 77
+ + SDELQILLNLKTSL++S +++F SW S N C+FTGITC SD+S V+EIELS+RNL
Sbjct: 19 SAVKSDELQILLNLKTSLQNSHTNVFDSWDSTNFICDFTGITCTSDNS-VKEIELSSRNL 77
Query: 78 KGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLN 137
G LP D +C LQ+L KLSLGFNSL G IS DLN C KLQYLDLGNN+FSG FPE +L+
Sbjct: 78 SGVLPLDRVCNLQSLEKLSLGFNSLSGVISVDLNKCTKLQYLDLGNNLFSGPFPEFPALS 137
Query: 138 ELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNC 197
+LQHL+LN SGFSGVFPW SL N+T+LV+LSVGDN FDPTPFP Q+VKL KLNWLYL+NC
Sbjct: 138 QLQHLFLNQSGFSGVFPWKSLDNITDLVTLSVGDNLFDPTPFPPQIVKLTKLNWLYLSNC 197
Query: 198 SIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRN 257
SI G IP I NL+ELIN E SDNN+SGEIPSEIG L LW+LELYNN L+G+LP GLRN
Sbjct: 198 SISGTIPQGIRNLSELINFEASDNNLSGEIPSEIGMLKNLWQLELYNNSLTGELPFGLRN 257
Query: 258 LTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNK 317
LT L NFDAS N L+G+LSE+RFLTNLV+LQLF N SGE+PAE G FKKLVNLSLY NK
Sbjct: 258 LTKLENFDASMNNLKGNLSELRFLTNLVSLQLFYNGLSGEIPAEFGLFKKLVNLSLYGNK 317
Query: 318 LTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANC 377
LTG LPQ++GSWA+F F+DVSEN LTG IPP+MCK+GTM+ LLMLQN TGEIPA+YA+C
Sbjct: 318 LTGPLPQQIGSWAKFHFVDVSENFLTGTIPPNMCKQGTMQQLLMLQNNLTGEIPASYASC 377
Query: 378 LTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNR 437
TL+RFRVS NSL GTVPAGIWGLP+VNIID+ NQ+EGP+T DI NAKAL LF NR
Sbjct: 378 KTLKRFRVSKNSLSGTVPAGIWGLPDVNIIDVEENQLEGPVTLDIGNAKALGQLFLGNNR 437
Query: 438 LSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470
LSGELPEEIS+ATSLV IKLN+NQ +GKIP +I
Sbjct: 438 LSGELPEEISEATSLVSIKLNDNQFSGKIPQNI 470
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359492994|ref|XP_002283604.2| PREDICTED: receptor-like protein kinase HAIKU2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1613), Expect = e-176, Method: Compositional matrix adjust.
Identities = 306/451 (67%), Positives = 369/451 (81%), Gaps = 1/451 (0%)
Query: 20 INSDELQILLNLKTSLKDSKSSIFSSWVSNNHFCNFTGITCNSDSSFVQEIELSNRNLKG 79
+ SDE+Q+LL +K L++ + +F SW SN+ CNF GITCNSD V+EIELSN+ L G
Sbjct: 26 VTSDEIQLLLKVKAELQNFDTYVFDSWESNDSACNFRGITCNSDGR-VREIELSNQRLSG 84
Query: 80 TLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNEL 139
+P +SICQL++L KLSLGFN L G IS DLN CV LQYLDLGNN+F+G P+ SSL+ L
Sbjct: 85 VVPLESICQLESLEKLSLGFNFLQGTISGDLNKCVGLQYLDLGNNLFTGPLPDFSSLSGL 144
Query: 140 QHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSI 199
+HLYLN SGFSG+FPW SL NM+ L+SLS+GDNPF P+P ++V KL LNWLYL+NCSI
Sbjct: 145 KHLYLNSSGFSGLFPWKSLQNMSGLISLSLGDNPFQPSPIAEEVFKLYDLNWLYLSNCSI 204
Query: 200 DGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLT 259
+G +P EIGNL +LINLELSDN +SGEIP+EIG L KLW+LELY N+L+GK+PVG RNLT
Sbjct: 205 NGTLPPEIGNLNKLINLELSDNYLSGEIPAEIGKLSKLWQLELYANELTGKIPVGFRNLT 264
Query: 260 NLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLT 319
NL NFDAS N LEGDLSE+RFL LV+LQLF+N FSG++P E G+F++LVNLSL++NKL+
Sbjct: 265 NLENFDASDNNLEGDLSELRFLNQLVSLQLFENSFSGQIPEEFGEFRRLVNLSLFSNKLS 324
Query: 320 GALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLT 379
G +PQ+LGSWA+FD+IDVSEN LTGPIPPDMCK G M++LLMLQNKFTGEIP TYA+C T
Sbjct: 325 GPIPQKLGSWADFDYIDVSENSLTGPIPPDMCKNGKMKELLMLQNKFTGEIPVTYASCST 384
Query: 380 LQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLS 439
L RFRV+NNSL GTVPAGIWGLP VNIIDI +N EG IT DI AK+L LF NRLS
Sbjct: 385 LTRFRVNNNSLSGTVPAGIWGLPNVNIIDITMNAFEGSITSDIAKAKSLGQLFVGNNRLS 444
Query: 440 GELPEEISKATSLVVIKLNNNQLTGKIPASI 470
GELP EISKA+SLV I L+NNQ + +IPA+I
Sbjct: 445 GELPVEISKASSLVSIDLSNNQFSREIPATI 475
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30681482|ref|NP_172468.3| leucine-rich receptor-like protein kinase [Arabidopsis thaliana] gi|332190402|gb|AEE28523.1| leucine-rich receptor-like protein kinase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 600 bits (1548), Expect = e-169, Method: Compositional matrix adjust.
Identities = 300/463 (64%), Positives = 360/463 (77%), Gaps = 4/463 (0%)
Query: 11 LLCLPFFTCINSDELQILLNLKTSLKDSKSSIFSSWVSNNHF--CNFTGITCNSDSSFVQ 68
L F+ ++SD+LQ+LL LK+S DS ++F SW N+ C+F G+TCNS + V
Sbjct: 17 FLVFSLFSVVSSDDLQVLLKLKSSFADSNLAVFDSWKLNSGIGPCSFIGVTCNSRGN-VT 75
Query: 69 EIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSG 128
EI+LS R L G PFDS+C++Q+L KLSLGFNSL G I DL NC L+YLDLGNN+FSG
Sbjct: 76 EIDLSRRGLSGNFPFDSVCEIQSLEKLSLGFNSLSGIIPSDLKNCTSLKYLDLGNNLFSG 135
Query: 129 SFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTP-FPDQVVKLN 187
+FPE SSLN+LQ LYLN S FSGVFPW SL N T+LV LS+GDNPFD T FP +VV L
Sbjct: 136 AFPEFSSLNQLQFLYLNNSAFSGVFPWKSLRNATSLVVLSLGDNPFDATADFPVEVVSLK 195
Query: 188 KLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQL 247
KL+WLYL+NCSI G+IP IG+LTEL NLE+SD+ ++GEIPSEI L LW+LELYNN L
Sbjct: 196 KLSWLYLSNCSIAGKIPPAIGDLTELRNLEISDSGLTGEIPSEISKLTNLWQLELYNNSL 255
Query: 248 SGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKK 307
+GKLP G NL NL DASTN L+GDLSE+R LTNLV+LQ+F+N+FSGE+P E G+FK
Sbjct: 256 TGKLPTGFGNLKNLTYLDASTNLLQGDLSELRSLTNLVSLQMFENEFSGEIPLEFGEFKD 315
Query: 308 LVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFT 367
LVNLSLYTNKLTG+LPQ LGS A+FDFID SENLLTGPIPPDMCK G M+ LL+LQN T
Sbjct: 316 LVNLSLYTNKLTGSLPQGLGSLADFDFIDASENLLTGPIPPDMCKNGKMKALLLLQNNLT 375
Query: 368 GEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKA 427
G IP +YANCLTLQRFRVS N+L GTVPAG+WGLP++ IIDI +N EGPIT DI+N K
Sbjct: 376 GSIPESYANCLTLQRFRVSENNLNGTVPAGLWGLPKLEIIDIEMNNFEGPITADIKNGKM 435
Query: 428 LNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470
L L+ +N+LS ELPEEI SL ++LNNN+ TGKIP+SI
Sbjct: 436 LGALYLGFNKLSDELPEEIGDTESLTKVELNNNRFTGKIPSSI 478
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|16118437|gb|AAL12626.1| leucine-rich repeat receptor-like kinase F21M12.36 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust.
Identities = 300/463 (64%), Positives = 360/463 (77%), Gaps = 4/463 (0%)
Query: 11 LLCLPFFTCINSDELQILLNLKTSLKDSKSSIFSSWVSNNHF--CNFTGITCNSDSSFVQ 68
L F+ ++SD+LQ+LL LK+S DS ++F SW N+ C+F G+TCNS + V
Sbjct: 17 FLVFSLFSVVSSDDLQVLLKLKSSFADSNLAVFDSWKLNSGIGPCSFIGVTCNSRGN-VT 75
Query: 69 EIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSG 128
EI+LS R L G PFDS+C++Q+L KLSLGFNSL G I DL NC L+YLDLGNN+FSG
Sbjct: 76 EIDLSRRGLSGNFPFDSVCEIQSLEKLSLGFNSLSGIIPSDLKNCTSLKYLDLGNNLFSG 135
Query: 129 SFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTP-FPDQVVKLN 187
+FPE SSLN+LQ LYLN S FSGVFPW SL N T+LV LS+GDNPFD T FP +VV L
Sbjct: 136 AFPEFSSLNQLQFLYLNNSAFSGVFPWKSLRNATSLVVLSLGDNPFDATADFPVEVVSLK 195
Query: 188 KLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQL 247
KL+WLYL+NCSI G+IP IG+LTEL NLE+SD+ ++GEIPSEI L LW+LELYNN L
Sbjct: 196 KLSWLYLSNCSIAGKIPPAIGDLTELRNLEISDSGLTGEIPSEISKLTNLWQLELYNNSL 255
Query: 248 SGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKK 307
+GKLP G NL NL DASTN L+GDLSE+R LTNLV+LQ+F+N+FSGE+P E G+FK
Sbjct: 256 TGKLPTGFGNLKNLTYLDASTNLLQGDLSELRSLTNLVSLQMFENEFSGEIPLEFGEFKD 315
Query: 308 LVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFT 367
LVNLSLYTNKLTG+LPQ LGS A+FDFID SENLLTGPIPPDMCK G M+ LL+LQN T
Sbjct: 316 LVNLSLYTNKLTGSLPQGLGSLADFDFIDASENLLTGPIPPDMCKNGKMKALLLLQNNLT 375
Query: 368 GEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKA 427
G IP +YANCLTLQRFRVS N+L GTVPAG+WGLP++ IIDI +N EGPIT DI+N K
Sbjct: 376 GSIPESYANCLTLQRFRVSENNLNGTVPAGLWGLPKLEIIDIEMNNFEGPITADIKNGKM 435
Query: 428 LNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470
L L+ +N+LS ELPEEI SL ++LNNN+ TGKIP+SI
Sbjct: 436 LGALYLGFNKLSDELPEEIGDTESLTKVELNNNRFTGKIPSSI 478
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30681478|ref|NP_850942.1| leucine-rich receptor-like protein kinase [Arabidopsis thaliana] gi|17065208|gb|AAL32758.1| Unknown protein [Arabidopsis thaliana] gi|224589386|gb|ACN59227.1| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gi|332190401|gb|AEE28522.1| leucine-rich receptor-like protein kinase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust.
Identities = 300/463 (64%), Positives = 360/463 (77%), Gaps = 4/463 (0%)
Query: 11 LLCLPFFTCINSDELQILLNLKTSLKDSKSSIFSSWVSNNHF--CNFTGITCNSDSSFVQ 68
L F+ ++SD+LQ+LL LK+S DS ++F SW N+ C+F G+TCNS + V
Sbjct: 17 FLVFSLFSVVSSDDLQVLLKLKSSFADSNLAVFDSWKLNSGIGPCSFIGVTCNSRGN-VT 75
Query: 69 EIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSG 128
EI+LS R L G PFDS+C++Q+L KLSLGFNSL G I DL NC L+YLDLGNN+FSG
Sbjct: 76 EIDLSRRGLSGNFPFDSVCEIQSLEKLSLGFNSLSGIIPSDLKNCTSLKYLDLGNNLFSG 135
Query: 129 SFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTP-FPDQVVKLN 187
+FPE SSLN+LQ LYLN S FSGVFPW SL N T+LV LS+GDNPFD T FP +VV L
Sbjct: 136 AFPEFSSLNQLQFLYLNNSAFSGVFPWKSLRNATSLVVLSLGDNPFDATADFPVEVVSLK 195
Query: 188 KLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQL 247
KL+WLYL+NCSI G+IP IG+LTEL NLE+SD+ ++GEIPSEI L LW+LELYNN L
Sbjct: 196 KLSWLYLSNCSIAGKIPPAIGDLTELRNLEISDSGLTGEIPSEISKLTNLWQLELYNNSL 255
Query: 248 SGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKK 307
+GKLP G NL NL DASTN L+GDLSE+R LTNLV+LQ+F+N+FSGE+P E G+FK
Sbjct: 256 TGKLPTGFGNLKNLTYLDASTNLLQGDLSELRSLTNLVSLQMFENEFSGEIPLEFGEFKD 315
Query: 308 LVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFT 367
LVNLSLYTNKLTG+LPQ LGS A+FDFID SENLLTGPIPPDMCK G M+ LL+LQN T
Sbjct: 316 LVNLSLYTNKLTGSLPQGLGSLADFDFIDASENLLTGPIPPDMCKNGKMKALLLLQNNLT 375
Query: 368 GEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKA 427
G IP +YANCLTLQRFRVS N+L GTVPAG+WGLP++ IIDI +N EGPIT DI+N K
Sbjct: 376 GSIPESYANCLTLQRFRVSENNLNGTVPAGLWGLPKLEIIDIEMNNFEGPITADIKNGKM 435
Query: 428 LNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470
L L+ +N+LS ELPEEI SL ++LNNN+ TGKIP+SI
Sbjct: 436 LGALYLGFNKLSDELPEEIGDTESLTKVELNNNRFTGKIPSSI 478
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297843796|ref|XP_002889779.1| hypothetical protein ARALYDRAFT_888250 [Arabidopsis lyrata subsp. lyrata] gi|297335621|gb|EFH66038.1| hypothetical protein ARALYDRAFT_888250 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust.
Identities = 295/466 (63%), Positives = 364/466 (78%), Gaps = 4/466 (0%)
Query: 8 LCLLLCLPFFTCINSDELQILLNLKTSLKDSKSSIFSSWVSNNHF--CNFTGITCNSDSS 65
L L F+ ++SD+LQ+LL LK+S DS ++F SW+ N+ C+FTG+TCNS +
Sbjct: 14 LSSFLVFSLFSVVSSDDLQVLLKLKSSFADSNLAVFDSWMLNSRTGPCSFTGVTCNSRGN 73
Query: 66 FVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNV 125
V EI+LS + L G PFD +C++Q+L KLSLGFNSL G I ++ NC L+YLDLGNN+
Sbjct: 74 -VTEIDLSRQGLSGNFPFDLVCEIQSLEKLSLGFNSLSGIIPSNMRNCTNLKYLDLGNNL 132
Query: 126 FSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTP-FPDQVV 184
FSG+FP+ SSLN+LQ+LYLN S FSGVFPW SL N T+LV LS+GDNPFD T FP +VV
Sbjct: 133 FSGTFPDFSSLNQLQYLYLNNSAFSGVFPWKSLRNATSLVVLSLGDNPFDATADFPVEVV 192
Query: 185 KLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYN 244
L KL+WLYL+NCSI G+IP IG+LTEL NLE++D++++GEIPSEI L LW+LELYN
Sbjct: 193 SLKKLSWLYLSNCSIAGKIPAAIGDLTELRNLEIADSSLTGEIPSEISKLTNLWQLELYN 252
Query: 245 NQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGK 304
N L+GKLP G NL NL DASTN L+GDLSE+R LTNLV+LQ+F+N+FSGE+P E G+
Sbjct: 253 NSLTGKLPTGFGNLKNLTYLDASTNLLQGDLSELRSLTNLVSLQMFENEFSGEIPMEFGE 312
Query: 305 FKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQN 364
FK LVNLSLYTNKLTG+LPQ LGS A+FDFID SENLLTGPIPPDMCK G M+ LL+LQN
Sbjct: 313 FKDLVNLSLYTNKLTGSLPQGLGSLADFDFIDASENLLTGPIPPDMCKNGKMKALLLLQN 372
Query: 365 KFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIEN 424
TG IP +YA+CLTL+RFRVS NSL GTVPAG+WGLP++ IIDI +N EGPIT DI+N
Sbjct: 373 NLTGSIPDSYASCLTLERFRVSENSLNGTVPAGLWGLPKLEIIDIEMNNFEGPITADIKN 432
Query: 425 AKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470
K L L+ +N+LS ELPEEI SL ++LNNN+ TGKIP+SI
Sbjct: 433 GKMLGALYLGFNKLSDELPEEIGDTKSLTKVELNNNRFTGKIPSSI 478
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515665|ref|XP_003526519.1| PREDICTED: receptor-like protein kinase HAIKU2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 582 bits (1501), Expect = e-163, Method: Compositional matrix adjust.
Identities = 281/448 (62%), Positives = 351/448 (78%), Gaps = 1/448 (0%)
Query: 23 DELQILLNLKTSLKDSKSSIFSSWVSNNHFCNFTGITCNSDSSFVQEIELSNRNLKGTLP 82
D+ QILLNLK++L +S S +F SW + N C F G+TCNS +S V EI LSN+ L G LP
Sbjct: 24 DQRQILLNLKSTLHNSNSKLFHSWNATNSVCTFLGVTCNSLNS-VTEINLSNQTLSGVLP 82
Query: 83 FDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHL 142
FDS+C+L +L KL G+N L G++S+D+ NCVKLQYLDLGNN+FSG FP+IS L ++Q+L
Sbjct: 83 FDSLCKLPSLQKLVFGYNYLNGKVSEDIRNCVKLQYLDLGNNLFSGPFPDISPLKQMQYL 142
Query: 143 YLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQ 202
+LN SGFSG FPW SL NMT L+ LSVGDNPFD TPFP +VV L LNWLYL+NC++ +
Sbjct: 143 FLNKSGFSGTFPWQSLLNMTGLLQLSVGDNPFDLTPFPKEVVSLKNLNWLYLSNCTLGWK 202
Query: 203 IPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLA 262
+PV +GNLTEL LE SDN ++G+ P+EI NL KLW+LE +NN +GK+P GLRNLT L
Sbjct: 203 LPVGLGNLTELTELEFSDNFLTGDFPAEIVNLRKLWQLEFFNNSFTGKIPTGLRNLTKLE 262
Query: 263 NFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGAL 322
D S N LEGDLSE+++LTNLV+LQ F+N SGE+P E+G+FK+L LSLY N+L G +
Sbjct: 263 LLDGSMNKLEGDLSELKYLTNLVSLQFFENDLSGEIPVEIGEFKRLEALSLYRNRLIGPI 322
Query: 323 PQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQR 382
PQ++GSWA+FD+IDVSEN LTG IPPDMCK+GTM LL+LQNK +GEIPATY +CL+L+R
Sbjct: 323 PQKVGSWAKFDYIDVSENFLTGTIPPDMCKKGTMSALLVLQNKLSGEIPATYGDCLSLKR 382
Query: 383 FRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGEL 442
FRVSNNSL G VP IWGLP V IIDI +NQ+ G I+ DI+ AKAL +FA NRLSGE+
Sbjct: 383 FRVSNNSLSGAVPLSIWGLPNVEIIDIEMNQLSGSISSDIKTAKALGSIFARQNRLSGEI 442
Query: 443 PEEISKATSLVVIKLNNNQLTGKIPASI 470
PEEIS ATSLV++ L+ NQ+ G IP I
Sbjct: 443 PEEISMATSLVIVDLSENQIFGNIPEGI 470
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507963|ref|XP_003522732.1| PREDICTED: receptor-like protein kinase HAIKU2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 280/448 (62%), Positives = 351/448 (78%), Gaps = 1/448 (0%)
Query: 23 DELQILLNLKTSLKDSKSSIFSSWVSNNHFCNFTGITCNSDSSFVQEIELSNRNLKGTLP 82
D+ QILLNLK+SL++S S + SW + N C F G+TCNS +S V EI LSN+ L G LP
Sbjct: 25 DQRQILLNLKSSLQNSNSKLLHSWNATNSVCTFHGVTCNSLNS-VTEINLSNQTLSGVLP 83
Query: 83 FDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHL 142
FDS+C+L +L KL GFN+L G +S+D+ NCV L+YLDLGNN+FSG FP+IS L +LQ+L
Sbjct: 84 FDSLCKLPSLQKLVFGFNNLNGNVSEDIRNCVNLRYLDLGNNLFSGPFPDISPLKQLQYL 143
Query: 143 YLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQ 202
+LN SGFSG FPW SL NMT L+ LSVGDNPFD TPFP +VV L LNWLYL+NC++ G+
Sbjct: 144 FLNRSGFSGTFPWQSLLNMTGLLQLSVGDNPFDLTPFPKEVVSLKNLNWLYLSNCTLRGK 203
Query: 203 IPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLA 262
+PV +GNLTEL LE SDN ++G+ P+EI NL KLW+L +NN +GK+P+GLRNLT L
Sbjct: 204 LPVGLGNLTELTELEFSDNFLTGDFPAEIVNLRKLWQLVFFNNSFTGKIPIGLRNLTRLE 263
Query: 263 NFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGAL 322
D S N LEGDLSE+++LTNLV+LQ F+N SGE+P E+G+FK+L LSLY N+L G +
Sbjct: 264 FLDGSMNKLEGDLSELKYLTNLVSLQFFENNLSGEIPVEIGEFKRLEALSLYRNRLIGPI 323
Query: 323 PQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQR 382
PQ++GSWAEF +IDVSEN LTG IPPDMCK+G M LL+LQNK +GEIPATY +CL+L+R
Sbjct: 324 PQKVGSWAEFAYIDVSENFLTGTIPPDMCKKGAMWALLVLQNKLSGEIPATYGDCLSLKR 383
Query: 383 FRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGEL 442
FRVSNNSL G VPA +WGLP V IIDI LNQ+ G ++ +I+NAK L +FA NRLSGE+
Sbjct: 384 FRVSNNSLSGAVPASVWGLPNVEIIDIELNQLSGSVSWNIKNAKTLASIFARQNRLSGEI 443
Query: 443 PEEISKATSLVVIKLNNNQLTGKIPASI 470
PEEISKATSLV + L+ NQ++G IP I
Sbjct: 444 PEEISKATSLVNVDLSENQISGNIPEGI 471
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437264|ref|XP_004136412.1| PREDICTED: receptor-like protein kinase HAIKU2-like [Cucumis sativus] gi|449516065|ref|XP_004165068.1| PREDICTED: receptor-like protein kinase HAIKU2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 285/448 (63%), Positives = 345/448 (77%), Gaps = 1/448 (0%)
Query: 23 DELQILLNLKTSLKDSKSSIFSSWVSNNHFCNFTGITCNSDSSFVQEIELSNRNLKGTLP 82
D+ QIL K+SL S S++F +W N C F+GI CNS FV +I+LS + L G +P
Sbjct: 26 DQRQILTKFKSSLHTSNSNVFHNWTLQNPICTFSGIACNSHG-FVTQIDLSQQALSGVVP 84
Query: 83 FDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHL 142
FDS+CQL AL KL+L NSL GEI+ LNNCVKL+YLDL N FS SFP I SL+EL+ L
Sbjct: 85 FDSLCQLPALEKLALRSNSLSGEITNSLNNCVKLKYLDLSGNSFSTSFPSIHSLSELEFL 144
Query: 143 YLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQ 202
YLNLSG SG FPW S+GN+ +L+ LSVGDN FD T FP +V L KLNWLY++NCS+ G+
Sbjct: 145 YLNLSGISGKFPWESIGNLKDLIVLSVGDNSFDSTTFPLEVTNLKKLNWLYMSNCSLTGE 204
Query: 203 IPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLA 262
IP IGNLTEL+NLE SDN+I+G IP EIGNL KL +LELYNNQL+G LPVGLRNLT L
Sbjct: 205 IPRSIGNLTELLNLEFSDNSITGTIPVEIGNLNKLRQLELYNNQLTGTLPVGLRNLTGLK 264
Query: 263 NFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGAL 322
NFDAS N++ GDLSE+R+LTNLV+LQ+F+NQ SG++P E G+FK LVNLSLY NKLTG +
Sbjct: 265 NFDASLNYIHGDLSELRYLTNLVSLQMFENQISGQIPVEFGEFKSLVNLSLYKNKLTGPI 324
Query: 323 PQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQR 382
PQ +GSW EFD+IDVSEN LTG IPPDMCK+GTM+ LL+LQN TGEIPATY +C TL R
Sbjct: 325 PQSIGSWTEFDYIDVSENFLTGSIPPDMCKKGTMKKLLVLQNNLTGEIPATYGSCSTLTR 384
Query: 383 FRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGEL 442
FRVS N L G VP+GIWGLP VNIID+ N++EG IT DI A AL+ L+ NR SG L
Sbjct: 385 FRVSQNLLTGVVPSGIWGLPNVNIIDLDSNKLEGSITSDIGKAVALSELYVGNNRFSGRL 444
Query: 443 PEEISKATSLVVIKLNNNQLTGKIPASI 470
P EIS+A SL + L+NNQ + ++PA+I
Sbjct: 445 PLEISQAKSLASVDLSNNQFSDELPATI 472
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359475504|ref|XP_002271143.2| PREDICTED: receptor-like protein kinase HAIKU2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 279/449 (62%), Positives = 341/449 (75%), Gaps = 1/449 (0%)
Query: 22 SDELQILLNLKTSLKDSKSSIFSSWVSNNHFCNFTGITCNSDSSFVQEIELSNRNLKGTL 81
SDELQILL K++L+ S +S+F +W N NFTGI CNS+ FV EI L + L+G L
Sbjct: 28 SDELQILLKFKSALEKSNTSVFDTWTQGNSVRNFTGIVCNSNG-FVTEILLPEQQLEGVL 86
Query: 82 PFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQH 141
PFDSIC+L++L K+ LG N L+G I + L NC +LQYLDLG N F+G+ PE+SSL+ L+
Sbjct: 87 PFDSICELKSLEKIDLGANVLHGGIGEGLKNCSQLQYLDLGVNFFTGTVPELSSLSGLKF 146
Query: 142 LYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDG 201
L LN SGFSG FPW SL N+TNL LS+GDN F+ + FP +++KL+KL WLYLTN S++G
Sbjct: 147 LNLNCSGFSGSFPWKSLENLTNLEFLSLGDNQFERSSFPLEILKLDKLYWLYLTNSSLEG 206
Query: 202 QIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNL 261
Q+P IGNLT+L NLELSDN + GEIP IG L KLW+LELY+N+ SGK P G NLTNL
Sbjct: 207 QVPEGIGNLTQLQNLELSDNYLHGEIPVGIGKLSKLWQLELYDNRFSGKFPEGFGNLTNL 266
Query: 262 ANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGA 321
NFDAS N LEGDLSE+RFLT L +LQLF+NQFSGEVP E G+FK L SLYTN LTG
Sbjct: 267 VNFDASNNSLEGDLSELRFLTKLASLQLFENQFSGEVPQEFGEFKYLEEFSLYTNNLTGP 326
Query: 322 LPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQ 381
LPQ+LGSW + FIDVSEN LTG IPP+MCK+G + L +L+NKFTGEIPA YANCL L+
Sbjct: 327 LPQKLGSWGDLTFIDVSENFLTGAIPPEMCKQGKLGALTVLKNKFTGEIPANYANCLPLK 386
Query: 382 RFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGE 441
R RV+NN L G VPAGIW LP +++ID +N GP+T DI NAK+L LF N SGE
Sbjct: 387 RLRVNNNFLSGIVPAGIWSLPNLSLIDFRVNHFHGPVTSDIGNAKSLAQLFLADNEFSGE 446
Query: 442 LPEEISKATSLVVIKLNNNQLTGKIPASI 470
LPEEISKA+ LVVI L++N+ +GKIPA+I
Sbjct: 447 LPEEISKASLLVVIDLSSNKFSGKIPATI 475
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 471 | ||||||
| TAIR|locus:2024432 | 977 | LRR XI-23 [Arabidopsis thalian | 0.961 | 0.463 | 0.641 | 4.9e-156 | |
| TAIR|locus:2091206 | 991 | IKU2 "HAIKU2" [Arabidopsis tha | 0.951 | 0.452 | 0.550 | 2.7e-123 | |
| TAIR|locus:2168907 | 966 | XIP1 "XYLEM INTERMIXED WITH PH | 0.883 | 0.430 | 0.444 | 6e-87 | |
| TAIR|locus:2207036 | 977 | AT1G72180 [Arabidopsis thalian | 0.881 | 0.424 | 0.388 | 3.9e-76 | |
| TAIR|locus:2005540 | 999 | HAE "HAESA" [Arabidopsis thali | 0.872 | 0.411 | 0.376 | 2.1e-70 | |
| TAIR|locus:2032553 | 996 | HSL1 "HAESA-like 1" [Arabidops | 0.874 | 0.413 | 0.357 | 2.6e-70 | |
| TAIR|locus:2169975 | 993 | HSL2 "HAESA-like 2" [Arabidops | 0.847 | 0.401 | 0.372 | 4.2e-64 | |
| TAIR|locus:2180587 | 811 | RLP52 "receptor like protein 5 | 0.874 | 0.508 | 0.345 | 6.4e-60 | |
| TAIR|locus:2011339 | 1120 | AT1G35710 [Arabidopsis thalian | 0.889 | 0.374 | 0.330 | 5.5e-59 | |
| TAIR|locus:2131518 | 1091 | AT4G26540 [Arabidopsis thalian | 0.959 | 0.414 | 0.320 | 9.8e-58 |
| TAIR|locus:2024432 LRR XI-23 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1521 (540.5 bits), Expect = 4.9e-156, P = 4.9e-156
Identities = 293/457 (64%), Positives = 351/457 (76%)
Query: 17 FTCINSDELQILLNLKTXXXXXXXXXXXXXXXNNHF--CNFTGITCNSDSSFVQEIELSN 74
F+ ++SD+LQ+LL LK+ N+ C+F G+TCNS + V EI+LS
Sbjct: 23 FSVVSSDDLQVLLKLKSSFADSNLAVFDSWKLNSGIGPCSFIGVTCNSRGN-VTEIDLSR 81
Query: 75 RNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEIS 134
R L G PFDS+C++Q+L KLSLGFNSL G I DL NC L+YLDLGNN+FSG+FPE S
Sbjct: 82 RGLSGNFPFDSVCEIQSLEKLSLGFNSLSGIIPSDLKNCTSLKYLDLGNNLFSGAFPEFS 141
Query: 135 SLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTP-FPDQVVKLNKLNWLY 193
SLN+LQ LYLN S FSGVFPW SL N T+LV LS+GDNPFD T FP +VV L KL+WLY
Sbjct: 142 SLNQLQFLYLNNSAFSGVFPWKSLRNATSLVVLSLGDNPFDATADFPVEVVSLKKLSWLY 201
Query: 194 LTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPV 253
L+NCSI G+IP IG+LTEL NLE+SD+ ++GEIPSEI L LW+LELYNN L+GKLP
Sbjct: 202 LSNCSIAGKIPPAIGDLTELRNLEISDSGLTGEIPSEISKLTNLWQLELYNNSLTGKLPT 261
Query: 254 GLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSL 313
G NL NL DASTN L+GDLSE+R LTNLV+LQ+F+N+FSGE+P E G+FK LVNLSL
Sbjct: 262 GFGNLKNLTYLDASTNLLQGDLSELRSLTNLVSLQMFENEFSGEIPLEFGEFKDLVNLSL 321
Query: 314 YTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPAT 373
YTNKLTG+LPQ LGS A+FDFID SENLLTGPIPPDMCK G M+ LL+LQN TG IP +
Sbjct: 322 YTNKLTGSLPQGLGSLADFDFIDASENLLTGPIPPDMCKNGKMKALLLLQNNLTGSIPES 381
Query: 374 YANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFA 433
YANCLTLQRFRVS N+L GTVPAG+WGLP++ IIDI +N EGPIT DI+N K L L+
Sbjct: 382 YANCLTLQRFRVSENNLNGTVPAGLWGLPKLEIIDIEMNNFEGPITADIKNGKMLGALYL 441
Query: 434 EYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470
+N+LS ELPEEI SL ++LNNN+ TGKIP+SI
Sbjct: 442 GFNKLSDELPEEIGDTESLTKVELNNNRFTGKIPSSI 478
|
|
| TAIR|locus:2091206 IKU2 "HAIKU2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1212 (431.7 bits), Expect = 2.7e-123, P = 2.7e-123
Identities = 252/458 (55%), Positives = 306/458 (66%)
Query: 21 NSDELQILLNLK-TXXXXXXXXXXXXXXXNNHFCNFTGITCNSDSSFVQEIELSNRNL-- 77
+S+E++ LL LK T N C F GI CNSD + V EI L +R+L
Sbjct: 23 HSEEVENLLKLKSTFGETKSDDVFKTWTHRNSACEFAGIVCNSDGNVV-EINLGSRSLIN 81
Query: 78 -----KGT-LPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP 131
+ T LPFDSIC L+ L KL LG NSL G+I +L C +L+YLDLG N FSG FP
Sbjct: 82 RDDDGRFTDLPFDSICDLKLLEKLVLGNNSLRGQIGTNLGKCNRLRYLDLGINNFSGEFP 141
Query: 132 EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNW 191
I SL L+ L LN SG SG+FPW SL ++ L LSVGDN F PFP +++ L L W
Sbjct: 142 AIDSLQLLEFLSLNASGISGIFPWSSLKDLKRLSFLSVGDNRFGSHPFPREILNLTALQW 201
Query: 192 LYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKL 251
+YL+N SI G+IP I NL L NLELSDN ISGEIP EI L L +LE+Y+N L+GKL
Sbjct: 202 VYLSNSSITGKIPEGIKNLVRLQNLELSDNQISGEIPKEIVQLKNLRQLEIYSNDLTGKL 261
Query: 252 PVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNL 311
P+G RNLTNL NFDAS N LEGDLSE+RFL NLV+L +F+N+ +GE+P E G FK L L
Sbjct: 262 PLGFRNLTNLRNFDASNNSLEGDLSELRFLKNLVSLGMFENRLTGEIPKEFGDFKSLAAL 321
Query: 312 SLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIP 371
SLY N+LTG LP+ LGSW F +IDVSEN L G IPP MCK+G M LLMLQN+FTG+ P
Sbjct: 322 SLYRNQLTGKLPRRLGSWTAFKYIDVSENFLEGQIPPYMCKKGVMTHLLMLQNRFTGQFP 381
Query: 372 ATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLL 431
+YA C TL R RVSNNSL G +P+GIWGLP + +D+A N EG +T DI NAK+L L
Sbjct: 382 ESYAKCKTLIRLRVSNNSLSGMIPSGIWGLPNLQFLDLASNYFEGNLTGDIGNAKSLGSL 441
Query: 432 FAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPAS 469
NR SG LP +IS A SLV + L N+ +G +P S
Sbjct: 442 DLSNNRFSGSLPFQISGANSLVSVNLRMNKFSGIVPES 479
|
|
| TAIR|locus:2168907 XIP1 "XYLEM INTERMIXED WITH PHLOEM 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
Identities = 190/427 (44%), Positives = 264/427 (61%)
Query: 51 HFCNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQ-LQALHKLSLGFNSLYGEISKD 109
++CNFTG+ C+ V +++LS +L G P D +C L L L N L + S
Sbjct: 58 NYCNFTGVRCDGQG-LVTDLDLSGLSLSGIFP-DGVCSYFPNLRVLRLSHNHL-NKSSSF 114
Query: 110 LN---NCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVS 166
LN NC L+ L++ + G+ P+ S + L+ + ++ + F+G FP +S+ N+T+L
Sbjct: 115 LNTIPNCSLLRDLNMSSVYLKGTLPDFSQMKSLRVIDMSWNHFTGSFP-LSIFNLTDLEY 173
Query: 167 LSVGDNP-FDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISG 225
L+ +NP D PD V KL KL + L C + G IP IGNLT L++LELS N +SG
Sbjct: 174 LNFNENPELDLWTLPDSVSKLTKLTHMLLMTCMLHGNIPRSIGNLTSLVDLELSGNFLSG 233
Query: 226 EIPSEIGNLVKLWRLELYNN-QLSGKLPVGLRNLTNLANFDASTNFLEGDLSE-VRFLTN 283
EIP EIGNL L +LELY N L+G +P + NL NL + D S + L G + + + L N
Sbjct: 234 EIPKEIGNLSNLRQLELYYNYHLTGSIPEEIGNLKNLTDIDISVSRLTGSIPDSICSLPN 293
Query: 284 LVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLT 343
L LQL+ N +GE+P LG K L LSLY N LTG LP LGS + +DVSEN L+
Sbjct: 294 LRVLQLYNNSLTGEIPKSLGNSKTLKILSLYDNYLTGELPPNLGSSSPMIALDVSENRLS 353
Query: 344 GPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPE 403
GP+P +CK G + L+LQN+FTG IP TY +C TL RFRV++N L GT+P G+ LP
Sbjct: 354 GPLPAHVCKSGKLLYFLVLQNRFTGSIPETYGSCKTLIRFRVASNRLVGTIPQGVMSLPH 413
Query: 404 VNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463
V+IID+A N + GPI I NA L+ LF + NR+SG +P E+S +T+LV + L+NNQL+
Sbjct: 414 VSIIDLAYNSLSGPIPNAIGNAWNLSELFMQSNRISGVIPHELSHSTNLVKLDLSNNQLS 473
Query: 464 GKIPASI 470
G IP+ +
Sbjct: 474 GPIPSEV 480
|
|
| TAIR|locus:2207036 AT1G72180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
Identities = 163/420 (38%), Positives = 245/420 (58%)
Query: 53 CNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNN 112
C F GITC+ S V I L N NL GT+ SI L L LSL N + G I ++ N
Sbjct: 62 CVFRGITCDPLSGEVIGISLGNVNLSGTIS-PSISALTKLSTLSLPSNFISGRIPPEIVN 120
Query: 113 CVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFP-WMSLGNMTNLVSLSVGD 171
C L+ L+L +N SG+ P +S L L+ L ++ + +G F W +GNM LVSL +G+
Sbjct: 121 CKNLKVLNLTSNRLSGTIPNLSPLKSLEILDISGNFLNGEFQSW--IGNMNQLVSLGLGN 178
Query: 172 NPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEI 231
N ++ P+ + L KL WL+L ++ G+IP I +L L ++++N IS + P I
Sbjct: 179 NHYEEGIIPESIGGLKKLTWLFLARSNLTGKIPNSIFDLNALDTFDIANNAISDDFPILI 238
Query: 232 GNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDL-SEVRFLTNLVTLQLF 290
LV L ++EL+NN L+GK+P ++NLT L FD S+N L G L E+ L L
Sbjct: 239 SRLVNLTKIELFNNSLTGKIPPEIKNLTRLREFDISSNQLSGVLPEELGVLKELRVFHCH 298
Query: 291 KNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDM 350
+N F+GE P+ G L +LS+Y N +G P +G ++ D +D+SEN TGP P +
Sbjct: 299 ENNFTGEFPSGFGDLSHLTSLSIYRNNFSGEFPVNIGRFSPLDTVDISENEFTGPFPRFL 358
Query: 351 CKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIA 410
C+ ++ LL LQN+F+GEIP +Y C +L R R++NN L G V G W LP +ID++
Sbjct: 359 CQNKKLQFLLALQNEFSGEIPRSYGECKSLLRLRINNNRLSGQVVEGFWSLPLAKMIDLS 418
Query: 411 LNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470
N++ G ++ I + L+ L + NR SG++P E+ + T++ I L+NN L+G+IP +
Sbjct: 419 DNELTGEVSPQIGLSTELSQLILQNNRFSGKIPRELGRLTNIERIYLSNNNLSGEIPMEV 478
|
|
| TAIR|locus:2005540 HAE "HAESA" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
Identities = 158/420 (37%), Positives = 232/420 (55%)
Query: 55 FTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLN-NC 113
F I C+ S + + L N ++ G+L D L L L N L G I K L N
Sbjct: 81 FPSILCHLPS--LHSLSLYNNSINGSLSADDFDTCHNLISLDLSENLLVGSIPKSLPFNL 138
Query: 114 VKLQYLDLGNNVFSGSFPEISSLNELQHLY-LNLSG--FSGVFPWMSLGNMTNLVSLSVG 170
L++L++ N S + P SS E + L LNL+G SG P SLGN+T L L +
Sbjct: 139 PNLKFLEISGNNLSDTIP--SSFGEFRKLESLNLAGNFLSGTIP-ASLGNVTTLKELKLA 195
Query: 171 DNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSE 230
N F P+ P Q+ L +L L+L C++ G IP + LT L+NL+L+ N ++G IPS
Sbjct: 196 YNLFSPSQIPSQLGNLTELQVLWLAGCNLVGPIPPSLSRLTSLVNLDLTFNQLTGSIPSW 255
Query: 231 IGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLF 290
I L + ++EL+NN SG+LP + N+T L FDAS N L G + + L NL +L LF
Sbjct: 256 ITQLKTVEQIELFNNSFSGELPESMGNMTTLKRFDASMNKLTGKIPDNLNLLNLESLNLF 315
Query: 291 KNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDM 350
+N G +P + + K L L L+ N+LTG LP +LG+ + ++D+S N +G IP ++
Sbjct: 316 ENMLEGPLPESITRSKTLSELKLFNNRLTGVLPSQLGANSPLQYVDLSYNRFSGEIPANV 375
Query: 351 CKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIA 410
C G + L+++ N F+GEI C +L R R+SNN L G +P G WGLP +++++++
Sbjct: 376 CGEGKLEYLILIDNSFSGEISNNLGKCKSLTRVRLSNNKLSGQIPHGFWGLPRLSLLELS 435
Query: 411 LNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470
N G I K I AK L+ L NR SG +P EI ++ I N +G+IP S+
Sbjct: 436 DNSFTGSIPKTIIGAKNLSNLRISKNRFSGSIPNEIGSLNGIIEISGAENDFSGEIPESL 495
|
|
| TAIR|locus:2032553 HSL1 "HAESA-like 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
Identities = 149/417 (35%), Positives = 235/417 (56%)
Query: 55 FTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCV 114
F + C + + + L N ++ TLP + I ++L L L N L GE+ + L +
Sbjct: 76 FPSVICRLSN--LAHLSLYNNSINSTLPLN-IAACKSLQTLDLSQNLLTGELPQTLADIP 132
Query: 115 KLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNP 173
L +LDL N FSG P L+ L L + G P LGN++ L L++ NP
Sbjct: 133 TLVHLDLTGNNFSGDIPASFGKFENLEVLSLVYNLLDGTIPPF-LGNISTLKMLNLSYNP 191
Query: 174 FDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGN 233
F P+ P + L L ++LT C + GQIP +G L++L++L+L+ N++ G IP +G
Sbjct: 192 FSPSRIPPEFGNLTNLEVMWLTECHLVGQIPDSLGQLSKLVDLDLALNDLVGHIPPSLGG 251
Query: 234 LVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQ 293
L + ++ELYNN L+G++P L NL +L DAS N L G + + L +L L++N
Sbjct: 252 LTNVVQIELYNNSLTGEIPPELGNLKSLRLLDASMNQLTGKIPDELCRVPLESLNLYENN 311
Query: 294 FSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKR 353
GE+PA + L + ++ N+LTG LP++LG + ++DVSEN +G +P D+C +
Sbjct: 312 LEGELPASIALSPNLYEIRIFGNRLTGGLPKDLGLNSPLRWLDVSENEFSGDLPADLCAK 371
Query: 354 GTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQ 413
G + +LL++ N F+G IP + A+C +L R R++ N G+VP G WGLP VN++++ N
Sbjct: 372 GELEELLIIHNSFSGVIPESLADCRSLTRIRLAYNRFSGSVPTGFWGLPHVNLLELVNNS 431
Query: 414 IEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470
G I+K I A L+LL N +G LPEEI +L + + N+ +G +P S+
Sbjct: 432 FSGEISKSIGGASNLSLLILSNNEFTGSLPEEIGSLDNLNQLSASGNKFSGSLPDSL 488
|
|
| TAIR|locus:2169975 HSL2 "HAESA-like 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 658 (236.7 bits), Expect = 4.2e-64, P = 4.2e-64
Identities = 150/403 (37%), Positives = 224/403 (55%)
Query: 70 IELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGS 129
I LS NL GT+ + L L L N+ G++ + KL+ L+L +N+F+G
Sbjct: 103 ITLSQNNLNGTIDSAPLSLCSKLQNLILNQNNFSGKLPEFSPEFRKLRVLELESNLFTGE 162
Query: 130 FPE-ISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNK 188
P+ L LQ L LN + SG+ P LG +T L L + FDP+P P + L+
Sbjct: 163 IPQSYGRLTALQVLNLNGNPLSGIVPAF-LGYLTELTRLDLAYISFDPSPIPSTLGNLSN 221
Query: 189 LNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLS 248
L L LT+ ++ G+IP I NL L NL+L+ N+++GEIP IG L ++++ELY+N+LS
Sbjct: 222 LTDLRLTHSNLVGEIPDSIMNLVLLENLDLAMNSLTGEIPESIGRLESVYQIELYDNRLS 281
Query: 249 GKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKL 308
GKLP + NLT L NFD S N L G+L E L++ L N F+G +P + L
Sbjct: 282 GKLPESIGNLTELRNFDVSQNNLTGELPEKIAALQLISFNLNDNFFTGGLPDVVALNPNL 341
Query: 309 VNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTG 368
V ++ N TG LP+ LG ++E DVS N +G +PP +C R ++ ++ N+ +G
Sbjct: 342 VEFKIFNNSFTGTLPRNLGKFSEISEFDVSTNRFSGELPPYLCYRRKLQKIITFSNQLSG 401
Query: 369 EIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALN-QIEGPITKDIENAKA 427
EIP +Y +C +L R+++N L G VPA W LP + +++A N Q++G I I A+
Sbjct: 402 EIPESYGDCHSLNYIRMADNKLSGEVPARFWELP-LTRLELANNNQLQGSIPPSISKARH 460
Query: 428 LNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470
L+ L N SG +P ++ L VI L+ N G IP+ I
Sbjct: 461 LSQLEISANNFSGVIPVKLCDLRDLRVIDLSRNSFLGSIPSCI 503
|
|
| TAIR|locus:2180587 RLP52 "receptor like protein 52" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
Identities = 152/440 (34%), Positives = 238/440 (54%)
Query: 54 NFTGITCNSDSSF--VQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLN 111
NFTG + +F ++ + LS G P + L L L N G + D+N
Sbjct: 74 NFTGTVPTTICNFPNLKSLNLSFNYFAGEFP-TVLYNCTKLQYLDLSQNLFNGSLPDDIN 132
Query: 112 NCV-KLQYLDLGNNVFSGSFPE-ISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSV 169
KL+YLDL N F+G P+ I +++L+ L L +S + G FP +G+++ L L +
Sbjct: 133 RLAPKLKYLDLAANSFAGDIPKNIGRISKLKVLNLYMSEYDGTFP-SEIGDLSELEELQL 191
Query: 170 GDNP-FDPTPFPDQVVKLNKLNWLYLTNCSIDGQIP-VEIGNLTELINLELSDNNISGEI 227
N F P P + KL KL +++L ++ G+I V N+T+L +++LS NN++G I
Sbjct: 192 ALNDKFTPVKLPTEFGKLKKLKYMWLEEMNLIGEISAVVFENMTDLKHVDLSVNNLTGRI 251
Query: 228 PSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSE-VRFLTNLVT 286
P + L L L L+ N L+G++P + + NL + D S N L G + E + LTNL
Sbjct: 252 PDVLFGLKNLTELYLFANDLTGEIPKSI-SAKNLVHLDLSANNLNGSIPESIGNLTNLEL 310
Query: 287 LQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPI 346
L LF N+ +GE+P +GK +L L L+TNKLTG +P E+G ++ + +VSEN LTG +
Sbjct: 311 LYLFVNELTGEIPRAIGKLPELKELKLFTNKLTGEIPAEIGFISKLERFEVSENQLTGKL 370
Query: 347 PPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRV----------------SNNSL 390
P ++C G ++ +++ N TGEIP + +C TL + SNN+
Sbjct: 371 PENLCHGGKLQSVIVYSNNLTGEIPESLGDCETLSSVLLQNNGFSGSVTISNNTRSNNNF 430
Query: 391 KGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKAT 450
G +P+ I L + ++D++ N+ G I + I N L +L N LSG +PE IS T
Sbjct: 431 TGKIPSFICELHSLILLDLSTNKFNGSIPRCIANLSTLEVLNLGKNHLSGSIPENIS--T 488
Query: 451 SLVVIKLNNNQLTGKIPASI 470
S+ I + +NQL GK+P S+
Sbjct: 489 SVKSIDIGHNQLAGKLPRSL 508
|
|
| TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 614 (221.2 bits), Expect = 5.5e-59, P = 5.5e-59
Identities = 141/426 (33%), Positives = 221/426 (51%)
Query: 49 NNHF-C-NFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEI 106
N F C ++ G++CNS S ++E+ L+N ++GT L L + L N L G I
Sbjct: 60 NTSFSCTSWYGVSCNSRGS-IEELNLTNTGIEGTFQDFPFISLSNLAYVDLSMNLLSGTI 118
Query: 107 SKDLNNCVKLQYLDLGNNVFSGSF-PEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLV 165
N KL Y DL N +G P + +L L LYL+ + + V P LGNM ++
Sbjct: 119 PPQFGNLSKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQNYLTSVIP-SELGNMESMT 177
Query: 166 SLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISG 225
L++ N + P + L L LYL + G IP E+GN+ + +L LS N ++G
Sbjct: 178 DLALSQNKLTGS-IPSSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLTG 236
Query: 226 EIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDL-SEVRFLTNL 284
IPS +GNL L L LY N L+G +P + N+ ++ N S N L G + S + L NL
Sbjct: 237 SIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSIPSSLGNLKNL 296
Query: 285 VTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTG 344
L LF+N +G +P +LG + +++L L NKLTG++P LG+ + + EN LTG
Sbjct: 297 TLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTG 356
Query: 345 PIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEV 404
IPP++ +M DL + NK TG IP+++ N L + N L G +P + + +
Sbjct: 357 VIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESM 416
Query: 405 NIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTG 464
+D++ N++ G + N L L+ N LSG +P ++ ++ L + L+ N TG
Sbjct: 417 INLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHLSGAIPPGVANSSHLTTLILDTNNFTG 476
Query: 465 KIPASI 470
P ++
Sbjct: 477 FFPETV 482
|
|
| TAIR|locus:2131518 AT4G26540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 602 (217.0 bits), Expect = 9.8e-58, P = 9.8e-58
Identities = 147/459 (32%), Positives = 236/459 (51%)
Query: 16 FFTCINSDEL-QILLNLKTXXXXXXXXXXXXXXXNNHFCNFTGITCNSDSSFVQEIELSN 74
F C + D+ Q LL+ K+ + CN+ G+ CN V EI+L
Sbjct: 19 FIPCFSLDQQGQALLSWKSQLNISGDAFSSWHVADTSPCNWVGVKCNRRGE-VSEIQLKG 77
Query: 75 RNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EI 133
+L+G+LP S+ L++L L+L +L G I K++ + +L+ LDL +N SG P EI
Sbjct: 78 MDLQGSLPVTSLRSLKSLTSLTLSSLNLTGVIPKEIGDFTELELLDLSDNSLSGDIPVEI 137
Query: 134 SSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLY 193
L +L+ L LN + G P M +GN++ LV L + DN P + +L L L
Sbjct: 138 FRLKKLKTLSLNTNNLEGHIP-MEIGNLSGLVELMLFDNKLSGE-IPRSIGELKNLQVLR 195
Query: 194 LT-NCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLP 252
N ++ G++P EIGN L+ L L++ ++SG++P+ IGNL ++ + +Y + LSG +P
Sbjct: 196 AGGNKNLRGELPWEIGNCENLVMLGLAETSLSGKLPASIGNLKRVQTIAIYTSLLSGPIP 255
Query: 253 VGLRNLTNLANFDASTNFLEGDL-SEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNL 311
+ T L N N + G + + + L L +L L++N G++P ELG +L +
Sbjct: 256 DEIGYCTELQNLYLYQNSISGSIPTTIGGLKKLQSLLLWQNNLVGKIPTELGNCPELWLI 315
Query: 312 SLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIP 371
N LTG +P+ G + +S N ++G IP ++ + L + N TGEIP
Sbjct: 316 DFSENLLTGTIPRSFGKLENLQELQLSVNQISGTIPEELTNCTKLTHLEIDNNLITGEIP 375
Query: 372 ATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLL 431
+ +N +L F N L G +P + E+ ID++ N + G I K+I + L L
Sbjct: 376 SLMSNLRSLTMFFAWQNKLTGNIPQSLSQCRELQAIDLSYNSLSGSIPKEIFGLRNLTKL 435
Query: 432 FAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470
N LSG +P +I T+L ++LN N+L G IP+ I
Sbjct: 436 LLLSNDLSGFIPPDIGNCTNLYRLRLNGNRLAGSIPSEI 474
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 471 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 5e-80 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 8e-53 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-39 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-38 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-23 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 6e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-07 | |
| pfam08263 | 42 | pfam08263, LRRNT_2, Leucine rich repeat N-terminal | 6e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-04 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 1e-04 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 8e-04 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 266 bits (682), Expect = 5e-80
Identities = 163/479 (34%), Positives = 251/479 (52%), Gaps = 31/479 (6%)
Query: 17 FTCINSDELQILLNLKTSLKDSKSSIFSSWVSNNHFCNFTGITCNSDSS----------- 65
F+ ++++EL++LL+ K+S+ D S+W S+ C + GITCN+ S
Sbjct: 23 FSMLHAEELELLLSFKSSINDP-LKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNI 81
Query: 66 ------------FVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNC 113
++Q I LSN L G +P D +L L+L N+ G I +
Sbjct: 82 SGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN 141
Query: 114 VKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDN 172
L+ LDL NN+ SG P +I S + L+ L L + G P SL N+T+L L++ N
Sbjct: 142 --LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP-NSLTNLTSLEFLTLASN 198
Query: 173 PFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIG 232
P ++ ++ L W+YL ++ G+IP EIG LT L +L+L NN++G IPS +G
Sbjct: 199 QL-VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257
Query: 233 NLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSE-VRFLTNLVTLQLFK 291
NL L L LY N+LSG +P + +L L + D S N L G++ E V L NL L LF
Sbjct: 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS 317
Query: 292 NQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMC 351
N F+G++P L +L L L++NK +G +P+ LG +D+S N LTG IP +C
Sbjct: 318 NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC 377
Query: 352 KRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIAL 411
G + L++ N GEIP + C +L+R R+ +NS G +P+ LP V +DI+
Sbjct: 378 SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISN 437
Query: 412 NQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470
N ++G I + +L +L N+ G LP + + L + L+ NQ +G +P +
Sbjct: 438 NNLQGRINSRKWDMPSLQMLSLARNKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPRKL 495
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 191 bits (486), Expect = 8e-53
Identities = 150/483 (31%), Positives = 237/483 (49%), Gaps = 33/483 (6%)
Query: 14 LPFFTCINSDELQILLNLKTSLKDSKSSIFSSWVSNNHFCNFTGITCNSDSSFVQEIELS 73
LP+ IN Q+ + + + SS+ +SNN NFTG ++ ++LS
Sbjct: 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN---NFTGSIPRGSIPNLETLDLS 148
Query: 74 NRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-E 132
N L G +P D I +L L LG N L G+I L N L++L L +N G P E
Sbjct: 149 NNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE 207
Query: 133 ISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWL 192
+ + L+ +YL + SG P+ +G +T+L L + N P P + L L +L
Sbjct: 208 LGQMKSLKWIYLGYNNLSGEIPY-EIGGLTSLNHLDLVYNNLT-GPIPSSLGNLKNLQYL 265
Query: 193 YLTNCSIDGQIPVEIGNLTELINLELSDNNISGEI------------------------P 228
+L + G IP I +L +LI+L+LSDN++SGEI P
Sbjct: 266 FLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325
Query: 229 SEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLT-NLVTL 287
+ +L +L L+L++N+ SG++P L NL D STN L G++ E + NL L
Sbjct: 326 VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL 385
Query: 288 QLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIP 347
LF N GE+P LG + L + L N +G LP E F+D+S N L G I
Sbjct: 386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN 445
Query: 348 PDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNII 407
+++ L + +NKF G +P ++ + L+ +S N G VP + L E+ +
Sbjct: 446 SRKWDMPSLQMLSLARNKFFGGLPDSFGSK-RLENLDLSRNQFSGAVPRKLGSLSELMQL 504
Query: 408 DIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIP 467
++ N++ G I ++ + K L L +N+LSG++P S+ L + L+ NQL+G+IP
Sbjct: 505 KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564
Query: 468 ASI 470
++
Sbjct: 565 KNL 567
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 4e-39
Identities = 117/373 (31%), Positives = 184/373 (49%), Gaps = 30/373 (8%)
Query: 70 IELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGS 129
I L NL G +P++ I L +L+ L L +N+L G I L N LQYL L N SG
Sbjct: 217 IYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275
Query: 130 F-PEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNK 188
P I SL +L L L+ + SG P + + + NL L + N F P + L +
Sbjct: 276 IPPSIFSLQKLISLDLSDNSLSGEIPEL-VIQLQNLEILHLFSNNFTGK-IPVALTSLPR 333
Query: 189 LNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISG----------------------- 225
L L L + G+IP +G L L+LS NN++G
Sbjct: 334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE 393
Query: 226 -EIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRF-LTN 283
EIP +G L R+ L +N SG+LP L + D S N L+G ++ ++ + +
Sbjct: 394 GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453
Query: 284 LVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLT 343
L L L +N+F G +P G K+L NL L N+ +GA+P++LGS +E + +SEN L+
Sbjct: 454 LQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS 512
Query: 344 GPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPE 403
G IP ++ + L + N+ +G+IPA+++ L + +S N L G +P + +
Sbjct: 513 GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVES 572
Query: 404 VNIIDIALNQIEG 416
+ ++I+ N + G
Sbjct: 573 LVQVNISHNHLHG 585
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 2e-38
Identities = 113/325 (34%), Positives = 166/325 (51%), Gaps = 4/325 (1%)
Query: 72 LSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP 131
L L G +P SI LQ L L L NSL GEI + + L+ L L +N F+G P
Sbjct: 267 LYQNKLSGPIP-PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325
Query: 132 E-ISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLN 190
++SL LQ L L + FSG P +LG NL L + N P+ + L
Sbjct: 326 VALTSLPRLQVLQLWSNKFSGEIP-KNLGKHNNLTVLDLSTNNLT-GEIPEGLCSSGNLF 383
Query: 191 WLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGK 250
L L + S++G+IP +G L + L DN+ SGE+PSE L ++ L++ NN L G+
Sbjct: 384 KLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR 443
Query: 251 LPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVN 310
+ ++ +L + N G L + L L L +NQFSG VP +LG +L+
Sbjct: 444 INSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQ 503
Query: 311 LSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEI 370
L L NKL+G +P EL S + +D+S N L+G IP + + L + QN+ +GEI
Sbjct: 504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563
Query: 371 PATYANCLTLQRFRVSNNSLKGTVP 395
P N +L + +S+N L G++P
Sbjct: 564 PKNLGNVESLVQVNISHNHLHGSLP 588
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-23
Identities = 75/263 (28%), Positives = 119/263 (45%), Gaps = 48/263 (18%)
Query: 209 NLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDAST 268
N + +++++LS NISG+I S I L + + L NNQLSG +P + +
Sbjct: 67 NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTS--------- 117
Query: 269 NFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGS 328
S +R+L L N F+G +P G L L L N L+G +P ++GS
Sbjct: 118 -------SSLRYL------NLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGS 162
Query: 329 WAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNN 388
++ +D+ N+L G IP + ++ L + N+ G+IP +L+ + N
Sbjct: 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222
Query: 389 SLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISK 448
+L G +P I GL +N +D+ N + GPI + N K L LF
Sbjct: 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF---------------- 266
Query: 449 ATSLVVIKLNNNQLTGKIPASIY 471
L N+L+G IP SI+
Sbjct: 267 --------LYQNKLSGPIPPSIF 281
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 2e-12
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 179 FPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLW 238
P+ + KL L + L+ SI G IP +G++T L L+LS N+ +G IP +G L L
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493
Query: 239 RLELYNNQLSGKLPVGL 255
L L N LSG++P L
Sbjct: 494 ILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 3e-12
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 55 FTGITCNSDSS----FVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDL 110
++G C DS+ F+ + L N+ L+G +P + I +L+ L ++L NS+ G I L
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIP-NDISKLRHLQSINLSGNSIRGNIPPSL 462
Query: 111 NNCVKLQYLDLGNNVFSGSFPE-ISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSV 169
+ L+ LDL N F+GS PE + L L+ L LN + SG P G + + S +
Sbjct: 463 GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF 522
Query: 170 GDNP 173
DN
Sbjct: 523 TDNA 526
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 28/84 (33%), Positives = 49/84 (58%)
Query: 387 NNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEI 446
N L+G +P I L + I+++ N I G I + + +L +L YN +G +PE +
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486
Query: 447 SKATSLVVIKLNNNQLTGKIPASI 470
+ TSL ++ LN N L+G++PA++
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 6e-10
Identities = 30/84 (35%), Positives = 45/84 (53%)
Query: 192 LYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKL 251
L L N + G IP +I L L ++ LS N+I G IP +G++ L L+L N +G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 252 PVGLRNLTNLANFDASTNFLEGDL 275
P L LT+L + + N L G +
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRV 506
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 240 LELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEV 298
L L N L G +P + L +L + + S N + G++ + +T+L L L N F+G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 299 PAELGKFKKLVNLSLYTNKLTGALPQELGSW----AEFDFID 336
P LG+ L L+L N L+G +P LG A F+F D
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD 524
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 296 GEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGT 355
G +P ++ K + L +++L N + G +P LGS + +D+S N G IP + + +
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491
Query: 356 MRDLLMLQNKFTGEIPATY-ANCLTLQRFRVSNNSLKGTVPAGIWGLP 402
+R L + N +G +PA L F ++N AG+ G+P
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN-------AGLCGIP 532
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 5e-07
Identities = 39/117 (33%), Positives = 53/117 (45%), Gaps = 31/117 (26%)
Query: 119 LDLGNNVFSGSFP-EISSLNELQHLYLNLSGFS--GVFPWMSLGNMTNLVSLSVGDNPFD 175
L L N G P +IS L LQ + NLSG S G P SLG++T+L L + N F+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSI--NLSGNSIRGNIP-PSLGSITSLEVLDLSYNSFN 479
Query: 176 PTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIG 232
G IP +G LT L L L+ N++SG +P+ +G
Sbjct: 480 -------------------------GSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 6e-07
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 21 NSDELQILLNLKTSLKDSKSSIFSSWVSNN-HFCNFTGITCN 61
+D+ LL K+SL S SSW ++ C++TG+TC+
Sbjct: 1 LNDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42
|
Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 270 FLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSW 329
F+ D+S++R L ++ L N G +P LG L L L N G++P+ LG
Sbjct: 433 FIPNDISKLRHLQSI---NLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489
Query: 330 AEFDFIDVSENLLTGPIP 347
++++ N L+G +P
Sbjct: 490 TSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 64/189 (33%), Positives = 90/189 (47%), Gaps = 8/189 (4%)
Query: 156 MSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLT-ELI 214
+L N+ L SL + N +++L L L L N +I IP IG L L
Sbjct: 87 ENLLNLLPLPSLDLNLNRLRSNISE--LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLK 143
Query: 215 NLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGD 274
L+LSDN I +PS + NL L L+L N LS LP L NL+NL N D S N + D
Sbjct: 144 ELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-D 200
Query: 275 LSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDF 334
L L + + N E+ + L K L L L NKL LP+ +G+ + +
Sbjct: 201 LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLET 259
Query: 335 IDVSENLLT 343
+D+S N ++
Sbjct: 260 LDLSNNQIS 268
|
Length = 394 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 8e-04
Identities = 89/334 (26%), Positives = 129/334 (38%), Gaps = 51/334 (15%)
Query: 72 LSNRNLKGTLPFDSICQLQ---ALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSG 128
L N +L+G+ I L L L L S E+ + KL+ LD+
Sbjct: 636 LRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE 695
Query: 129 SFPEISSLNELQHLY-LNLSGFSGV--FPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVK 185
P + +N L+ LY LNLSG S + FP +S TN+ L + + + P
Sbjct: 696 ILP--TGIN-LKSLYRLNLSGCSRLKSFPDIS----TNISWLDLDETAIEEFP-----SN 743
Query: 186 LNKLNWLYLTNCSI-DGQIPVEIGNLTELIN--------LELSDNNISGEIPSEIGNLVK 236
L N L C + ++ + LT L+ L LSD E+PS I NL K
Sbjct: 744 LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHK 803
Query: 237 LWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFL----TNLVTLQLFKN 292
L LE+ N LP G+ NL +L + D S S +R TN+ L L +
Sbjct: 804 LEHLEIENCINLETLPTGI-NLESLESLDLS------GCSRLRTFPDISTNISDLNLSRT 856
Query: 293 QFSGEVPAELGKFKKLVNLSLY-TNKLTGALPQ--ELGSWAEFDFID---VSENLLTGPI 346
EVP + KF L L + N L +L DF D ++E G
Sbjct: 857 GIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNG-S 914
Query: 347 PPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTL 380
P ++ + +K + + NC L
Sbjct: 915 PSEVAMATD-----NIHSKLPSTVCINFINCFNL 943
|
syringae 6; Provisional. Length = 1153 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 471 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.97 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.95 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.94 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.93 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.93 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.9 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.89 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.87 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.86 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.84 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.83 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.8 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.8 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.74 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.69 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.57 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.37 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.32 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.3 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.24 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.23 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.21 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.2 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.19 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.15 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.15 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.14 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.06 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.03 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.01 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.97 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.96 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.87 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.79 | |
| PF08263 | 43 | LRRNT_2: Leucine rich repeat N-terminal domain; In | 98.78 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.76 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.51 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.48 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.48 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.43 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.38 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.37 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.34 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.33 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.21 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.18 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.1 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.89 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.79 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.76 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.74 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.72 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.72 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.71 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.32 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.23 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.14 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.09 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.94 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.77 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.5 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.29 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 96.25 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.09 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.05 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.38 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 95.33 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 94.64 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 94.55 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 93.65 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 93.65 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 90.35 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 86.68 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 85.84 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 85.84 | |
| smart00364 | 26 | LRR_BAC Leucine-rich repeats, bacterial type. | 85.59 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 85.45 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 84.3 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 81.95 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-58 Score=499.56 Aligned_cols=449 Identities=32% Similarity=0.532 Sum_probs=363.8
Q ss_pred hccCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceeeceEeCCCCCCEEEEEcCCCCCccccCcccccCCCCCcE
Q 012103 15 PFFTCINSDELQILLNLKTSLKDSKSSIFSSWVSNNHFCNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHK 94 (471)
Q Consensus 15 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~gv~c~~~~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~ 94 (471)
..++...++|+.||++||+++.+|. ..+.+|..+.+||.|.||.|+. .++|+.|+|+++++.|.++.. +..+++|++
T Consensus 21 ~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~-~~~l~~L~~ 97 (968)
T PLN00113 21 LNFSMLHAEELELLLSFKSSINDPL-KYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSA-IFRLPYIQT 97 (968)
T ss_pred HHccCCCHHHHHHHHHHHHhCCCCc-ccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChH-HhCCCCCCE
Confidence 3445567899999999999997665 6679999888999999999986 679999999999999888765 999999999
Q ss_pred EeCCCCCCCcccccccc-CCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCC
Q 012103 95 LSLGFNSLYGEISKDLN-NCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNP 173 (471)
Q Consensus 95 L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 173 (471)
|++++|.+.+.+|..+. .+++|++|++++|.+++.+|. ..+++|++|++++|.+++..| ..++++++|++|++++|.
T Consensus 98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~ 175 (968)
T PLN00113 98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIP-NDIGSFSSLKVLDLGGNV 175 (968)
T ss_pred EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEECcCCcccccCC-hHHhcCCCCCEEECccCc
Confidence 99999999988887654 899999999999999887663 457888899999888888777 778888888888888888
Q ss_pred CCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCc
Q 012103 174 FDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPV 253 (471)
Q Consensus 174 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~ 253 (471)
+ ...+|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++++++|++|++++|.+.+.+|.
T Consensus 176 l-~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 254 (968)
T PLN00113 176 L-VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS 254 (968)
T ss_pred c-cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh
Confidence 7 455678888888888888888888888888888888888888888888888888888888888888888888878888
Q ss_pred cccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCC
Q 012103 254 GLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEF 332 (471)
Q Consensus 254 ~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L 332 (471)
.+.++++|++|++++|.+.+..+ .+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|
T Consensus 255 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 334 (968)
T PLN00113 255 SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRL 334 (968)
T ss_pred hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCC
Confidence 88888888888888888877665 67777888888888888887778777778888888888888877777777777888
Q ss_pred CEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccC
Q 012103 333 DFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALN 412 (471)
Q Consensus 333 ~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n 412 (471)
+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|
T Consensus 335 ~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n 414 (968)
T PLN00113 335 QVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414 (968)
T ss_pred CEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC
Confidence 88888888877777777777777888888877777777777777777777777777777777777777777777777777
Q ss_pred ccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCcccCCCC
Q 012103 413 QIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPAS 469 (471)
Q Consensus 413 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip~~ 469 (471)
++++.+|..+..++.|+.|++++|++++.+|..+..+++|+.|++++|+++|.+|..
T Consensus 415 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~ 471 (968)
T PLN00113 415 SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS 471 (968)
T ss_pred EeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc
Confidence 777777777777777777777777777777766666666666666666666666654
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-50 Score=433.30 Aligned_cols=402 Identities=32% Similarity=0.563 Sum_probs=255.9
Q ss_pred CCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEE
Q 012103 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHL 142 (471)
Q Consensus 64 ~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L 142 (471)
...++.|+|++|.+.+.+|.. ++.+++|++|++++|.+.+.+|..+.++++|++|++++|.+++..| .+.++++|++|
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred cCCCCEEECcCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 345777888888777666655 7777777777777777777777777777777777777777776666 66777777777
Q ss_pred EccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCc
Q 012103 143 YLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNN 222 (471)
Q Consensus 143 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 222 (471)
++++|.+.+..| ..+.++++|++|++++|.+ ...+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.
T Consensus 218 ~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l-~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 218 YLGYNNLSGEIP-YEIGGLTSLNHLDLVYNNL-TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred ECcCCccCCcCC-hhHhcCCCCCEEECcCcee-ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 777777776666 5666677777777776666 33455666666666666666666665566666666666666666666
Q ss_pred CCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCc------
Q 012103 223 ISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFS------ 295 (471)
Q Consensus 223 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~------ 295 (471)
+.+.+|..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+ .+..+++|+.|++++|.++
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence 555555555555555555555555555555555555555555555555444333 3333444444444444433
Q ss_pred ------------------cccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCC----
Q 012103 296 ------------------GEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKR---- 353 (471)
Q Consensus 296 ------------------~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~---- 353 (471)
+.+|..+..+++|+.|++++|.+++.+|..+..++.|+.|++++|.+++.+|..+..+
T Consensus 376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 455 (968)
T PLN00113 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455 (968)
T ss_pred HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence 3334444444455555555555554444444444444455554444444444333333
Q ss_pred -------------------CCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCcc
Q 012103 354 -------------------GTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQI 414 (471)
Q Consensus 354 -------------------~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~ 414 (471)
++|+.|++++|++.+.+|..+.++++|+.|++++|.+.+.+|..+..+++|++|++++|.+
T Consensus 456 ~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 535 (968)
T PLN00113 456 MLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535 (968)
T ss_pred EEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcc
Confidence 3455555555556566666666677777777777777777777777777777777777777
Q ss_pred ccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCcccCCC
Q 012103 415 EGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPA 468 (471)
Q Consensus 415 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip~ 468 (471)
++.+|..+.++++|+.|++++|+++|.+|..+..+++|+.+++++|+++|.||+
T Consensus 536 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 536 SGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred cccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 777777777777777777777777777777777777777777777777777775
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=297.83 Aligned_cols=389 Identities=19% Similarity=0.162 Sum_probs=328.1
Q ss_pred CEEEEEcCCCCCccccCcccccCC--CCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEE
Q 012103 66 FVQEIELSNRNLKGTLPFDSICQL--QALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLY 143 (471)
Q Consensus 66 ~v~~L~L~~~~l~g~l~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~ 143 (471)
..+-+|.+++.+. .+....+..+ +.-+.|++++|++....+..|.++++|+++++.+|.++..+.......+|+.|+
T Consensus 53 ~~~lldcs~~~le-a~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 53 NTRLLDCSDRELE-AIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLD 131 (873)
T ss_pred CceeeecCccccc-cccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEe
Confidence 3455666665554 2211112221 245679999999998889999999999999999999985544555666799999
Q ss_pred ccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcC
Q 012103 144 LNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNI 223 (471)
Q Consensus 144 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 223 (471)
|.+|.++.+.. ..++.++.|+.|||+.|.++..+. ..+..-.++++|++++|.++..-...|..+.+|..|.|+.|.+
T Consensus 132 L~~N~I~sv~s-e~L~~l~alrslDLSrN~is~i~~-~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri 209 (873)
T KOG4194|consen 132 LRHNLISSVTS-EELSALPALRSLDLSRNLISEIPK-PSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI 209 (873)
T ss_pred eeccccccccH-HHHHhHhhhhhhhhhhchhhcccC-CCCCCCCCceEEeeccccccccccccccccchheeeecccCcc
Confidence 99999998877 889999999999999999954432 3445557899999999999976677899999999999999999
Q ss_pred CCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCccccchhc
Q 012103 224 SGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEVPAEL 302 (471)
Q Consensus 224 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l 302 (471)
+...+..|.++++|+.|++..|++.-.-...|.++++|+.+.+..|.+...-. .|..+.++++|++..|+++..-..++
T Consensus 210 ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l 289 (873)
T KOG4194|consen 210 TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL 289 (873)
T ss_pred cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccc
Confidence 95555677779999999999999984445678999999999999999986555 78889999999999999997667788
Q ss_pred cCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcE
Q 012103 303 GKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQR 382 (471)
Q Consensus 303 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 382 (471)
.++++|+.|++++|.+...-+..+..++.|+.|+|++|+++..-+..+..+..|+.|+++.|.+...-...|..+.+|+.
T Consensus 290 fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~ 369 (873)
T KOG4194|consen 290 FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHK 369 (873)
T ss_pred cccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhh
Confidence 99999999999999999888888999999999999999999777778888999999999999999777778899999999
Q ss_pred EEccCCcCcccccc---cccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEecc
Q 012103 383 FRVSNNSLKGTVPA---GIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLN 458 (471)
Q Consensus 383 L~L~~n~~~~~~~~---~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 458 (471)
|||++|.+...|.+ .|.+++.|+.|++.+|++..+.-..|.++.+|+.|+|.+|.|...-|.+|..+ .|+.|.+.
T Consensus 370 LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 370 LDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred hcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 99999999866543 47789999999999999997777899999999999999999988888888887 78877665
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=288.17 Aligned_cols=366 Identities=22% Similarity=0.225 Sum_probs=321.5
Q ss_pred CCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEE
Q 012103 65 SFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLY 143 (471)
Q Consensus 65 ~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~ 143 (471)
..++.||+++|.+. .+....|.++++|+.+++..|.++ .+|.......+|+.|+|.+|.|+..-. .+..++.||.||
T Consensus 78 ~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred cceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 45688999999998 666666899999999999999997 677766666779999999999987666 889999999999
Q ss_pred ccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcC
Q 012103 144 LNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNI 223 (471)
Q Consensus 144 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 223 (471)
|+.|.++.... ..+..-.++++|+|+.|+|+..+ ...|..+.+|..|.+++|.++...+..|.++++|+.|+|..|.+
T Consensus 156 LSrN~is~i~~-~sfp~~~ni~~L~La~N~It~l~-~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 156 LSRNLISEIPK-PSFPAKVNIKKLNLASNRITTLE-TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhhchhhcccC-CCCCCCCCceEEeeccccccccc-cccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence 99999987665 77888899999999999996544 56788888999999999999966667888899999999999998
Q ss_pred CCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCccccchhc
Q 012103 224 SGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEVPAEL 302 (471)
Q Consensus 224 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l 302 (471)
.-.---.|.++++|+.|.+..|.+...-...|-.+.++++|++..|++...-. ++-++++|+.|++++|.|....++.+
T Consensus 234 rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W 313 (873)
T KOG4194|consen 234 RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW 313 (873)
T ss_pred eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh
Confidence 73335578899999999999999987777788899999999999999986665 88899999999999999999889999
Q ss_pred cCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccc---hhhhcCCC
Q 012103 303 GKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIP---ATYANCLT 379 (471)
Q Consensus 303 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~ 379 (471)
..+++|++|+|++|.++...+..+..+..|+.|+|+.|.++..-...+..+.+|+.|++++|.++..+. ..|..+++
T Consensus 314 sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~ 393 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPS 393 (873)
T ss_pred hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchh
Confidence 999999999999999997778889999999999999999985545567789999999999999886554 45788999
Q ss_pred CcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCC
Q 012103 380 LQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEY 435 (471)
Q Consensus 380 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~ 435 (471)
|+.|++.+|+++.....+|.+++.|+.|||.+|.|..+-|..|..+ .|..|.+..
T Consensus 394 LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 394 LRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 9999999999995555789999999999999999999999999988 888887754
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=296.27 Aligned_cols=362 Identities=25% Similarity=0.367 Sum_probs=265.8
Q ss_pred CcEEeCCCCCCC-ccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEcc
Q 012103 92 LHKLSLGFNSLY-GEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVG 170 (471)
Q Consensus 92 L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 170 (471)
.|-.|+++|.++ +..|..+..++.++.|.|...++...+..++++.+|++|.+.+|++.... ..+..++.|+.+.+.
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vh--GELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVH--GELSDLPRLRSVIVR 86 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhh--hhhccchhhHHHhhh
Confidence 344444444444 23444445555555555555544433335555555555555555555443 356666677777777
Q ss_pred CCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCc-cccCCCCCCeEeeccccccc
Q 012103 171 DNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPS-EIGNLVKLWRLELYNNQLSG 249 (471)
Q Consensus 171 ~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~ 249 (471)
+|++....+|..+..+..|+.|++++|++. +.|..+..-+++-+|+|++|+|. .+|. .+-++..|-.|++++|++.
T Consensus 87 ~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe- 163 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE- 163 (1255)
T ss_pred ccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-
Confidence 777766677777777777888888887777 56777777777778888888777 4444 4456777777888888776
Q ss_pred cCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCc-cccchhccCCCCCCEEEcccCcCcccCchhhc
Q 012103 250 KLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFS-GEVPAELGKFKKLVNLSLYTNKLTGALPQELG 327 (471)
Q Consensus 250 ~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~-~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~ 327 (471)
.+|..+..+.+|+.|.+++|.+...-- .+..+++|+.|.+++.+-+ ..+|.++..+.+|+.+|++.|.+. .+|+.+.
T Consensus 164 ~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly 242 (1255)
T KOG0444|consen 164 MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY 242 (1255)
T ss_pred hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHh
Confidence 667777777778888888877653222 4555677777888776544 467888888888888999988887 7888888
Q ss_pred CCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCc-ccccccccCCCCCCE
Q 012103 328 SWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLK-GTVPAGIWGLPEVNI 406 (471)
Q Consensus 328 ~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~-~~~~~~~~~~~~L~~ 406 (471)
++.+|+.|+|++|+++ .+........++++|+++.|+++ .+|..++.++.|+.|+..+|+++ +-||.+++.+..|++
T Consensus 243 ~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Lev 320 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEV 320 (1255)
T ss_pred hhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHH
Confidence 8888999999999887 55555566678889999999888 78888888899999988888876 457888888999999
Q ss_pred eecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCc
Q 012103 407 IDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463 (471)
Q Consensus 407 L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~s 463 (471)
+..++|.+. .+|+.++.|..|+.|.|++|++. ++|++|--++.|++||+..|+-.
T Consensus 321 f~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 321 FHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred HHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 999988887 78889999999999999999988 88999988899999999988755
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-38 Score=281.18 Aligned_cols=385 Identities=24% Similarity=0.365 Sum_probs=279.5
Q ss_pred CEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEcc
Q 012103 66 FVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLN 145 (471)
Q Consensus 66 ~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~ 145 (471)
.++.+++.++.+. ++|++ ++.+..++.++.++|++. .+|..+..+.+|+.+++++|.+...++.++.+-.|+.++..
T Consensus 69 ~l~vl~~~~n~l~-~lp~a-ig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 69 CLTVLNVHDNKLS-QLPAA-IGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred ceeEEEeccchhh-hCCHH-HHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcc
Confidence 3566777777776 66665 777777777777777776 56777777788888888888887777777778888888888
Q ss_pred CCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCC
Q 012103 146 LSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISG 225 (471)
Q Consensus 146 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 225 (471)
+|++...++ .+.++.+|..+++.+|++ ...|....+++.|++++...|-+. .+|+.++.+.+|..|++.+|++.
T Consensus 146 ~N~i~slp~--~~~~~~~l~~l~~~~n~l--~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~- 219 (565)
T KOG0472|consen 146 NNQISSLPE--DMVNLSKLSKLDLEGNKL--KALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR- 219 (565)
T ss_pred ccccccCch--HHHHHHHHHHhhccccch--hhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-
Confidence 887776553 677777888888888877 344555555788888888777776 67888888888888888888887
Q ss_pred cCCccccCCCCCCeEeeccccccccCCcc-ccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccC
Q 012103 226 EIPSEIGNLVKLWRLELYNNQLSGKLPVG-LRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGK 304 (471)
Q Consensus 226 ~~p~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 304 (471)
.+| .|.+|..|+++.++.|.+. .+|.. ..+++++..||+..|++...+..+.-+.+|++||+++|.++ .+|..+++
T Consensus 220 ~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgn 296 (565)
T KOG0472|consen 220 FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDIS-SLPYSLGN 296 (565)
T ss_pred cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccc-cCCccccc
Confidence 566 6788888888888888887 44444 45888889999999998866667777888999999999998 66778888
Q ss_pred CCCCCEEEcccCcCcc-------------------------------------cCch-h---hcCCCC------------
Q 012103 305 FKKLVNLSLYTNKLTG-------------------------------------ALPQ-E---LGSWAE------------ 331 (471)
Q Consensus 305 ~~~L~~L~L~~n~l~~-------------------------------------~~~~-~---~~~~~~------------ 331 (471)
+ +|+.|.+.+|.+.. ..+. . .....+
T Consensus 297 l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt 375 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT 375 (565)
T ss_pred c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence 8 88888888886531 0000 0 000111
Q ss_pred --------------CCEEeccCCccc-----------------------ccCchhhcCCCCCceeeccCCccccccchhh
Q 012103 332 --------------FDFIDVSENLLT-----------------------GPIPPDMCKRGTMRDLLMLQNKFTGEIPATY 374 (471)
Q Consensus 332 --------------L~~L~L~~n~l~-----------------------~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~ 374 (471)
...++++.|++. +.+|..++.+++|..|++++|.+. .+|..+
T Consensus 376 ~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~ 454 (565)
T KOG0472|consen 376 LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEM 454 (565)
T ss_pred cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhh
Confidence 234444444442 122233445566666666666555 566666
Q ss_pred hcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCE
Q 012103 375 ANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVV 454 (471)
Q Consensus 375 ~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 454 (471)
+.+..|+.++++.|+|. .+|.++.....++.+-.++|++....|..+.++..|..|++.+|.+. .+|..++++++|++
T Consensus 455 ~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~h 532 (565)
T KOG0472|consen 455 GSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRH 532 (565)
T ss_pred hhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeE
Confidence 66666777777777666 56666666666666666667777666667899999999999999999 89999999999999
Q ss_pred EeccCCcCcccCCC
Q 012103 455 IKLNNNQLTGKIPA 468 (471)
Q Consensus 455 L~l~~n~~sg~ip~ 468 (471)
|+++||+|. .|.
T Consensus 533 LeL~gNpfr--~Pr 544 (565)
T KOG0472|consen 533 LELDGNPFR--QPR 544 (565)
T ss_pred EEecCCccC--CCH
Confidence 999999998 554
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=281.76 Aligned_cols=363 Identities=26% Similarity=0.377 Sum_probs=321.2
Q ss_pred CCEEEEEcCCCCCccc-cCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEE
Q 012103 65 SFVQEIELSNRNLKGT-LPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLY 143 (471)
Q Consensus 65 ~~v~~L~L~~~~l~g~-l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~ 143 (471)
.-|+.+|+++|.++|. +|.+ ...+++++.|.|...++. .+|..++.+.+|++|.+++|++......+..++.|+.+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~-v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHD-VEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchh-HHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHh
Confidence 4589999999999954 5654 999999999999988886 789999999999999999999998888999999999999
Q ss_pred ccCCCCcc-cCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCc-cccCCCCCcEEEcccC
Q 012103 144 LNLSGFSG-VFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPV-EIGNLTELINLELSDN 221 (471)
Q Consensus 144 l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n 221 (471)
+.+|++.. .+| ..+..+..|..|+|++|++ .+.|..+..-+++-+|++++|++. .+|. -|.+++.|-.|+|++|
T Consensus 85 ~R~N~LKnsGiP-~diF~l~dLt~lDLShNqL--~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 85 VRDNNLKNSGIP-TDIFRLKDLTILDLSHNQL--REVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred hhccccccCCCC-chhcccccceeeecchhhh--hhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccc
Confidence 99999863 345 6888999999999999998 567999999999999999999998 5554 5678899999999999
Q ss_pred cCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCc--cccccCCCCCCCCEEEccCCcCccccc
Q 012103 222 NISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLE--GDLSEVRFLTNLVTLQLFKNQFSGEVP 299 (471)
Q Consensus 222 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~ 299 (471)
.+. .+|..+..+..|++|.+++|.+...--..+..+++|+.|.+++.+-+ ..++.+..+.+|..++++.|.+. .+|
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP 238 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP 238 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch
Confidence 998 78888999999999999999886433344567788889999987654 23347888999999999999998 889
Q ss_pred hhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCcccc-ccchhhhcCC
Q 012103 300 AELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTG-EIPATYANCL 378 (471)
Q Consensus 300 ~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~ 378 (471)
+.+..+++|+.|+|++|+++ .+....+.+.+|+.|+++.|+++ .+|.+++.++.|+.|...+|+++- -+|..++.+.
T Consensus 239 ecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~ 316 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI 316 (1255)
T ss_pred HHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence 99999999999999999998 55556677889999999999998 899999999999999999998764 3788999999
Q ss_pred CCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCc
Q 012103 379 TLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 379 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 439 (471)
.|+++...+|.+. .+|+++..|..|+.|.|+.|++. .+|+.+.-++.|..|++..|.--
T Consensus 317 ~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 317 QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 9999999999998 89999999999999999999987 68999999999999999999665
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-35 Score=262.92 Aligned_cols=389 Identities=24% Similarity=0.368 Sum_probs=329.1
Q ss_pred CEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEcc
Q 012103 66 FVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLN 145 (471)
Q Consensus 66 ~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~ 145 (471)
.+..+.+++|.+. .+..+ +.++..|.++++++|++. .+|.+++.+..++.++.++|+++..++.+..+.+|+.++++
T Consensus 46 ~l~~lils~N~l~-~l~~d-l~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLRED-LKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchh-hccHh-hhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcc
Confidence 3567899999988 66555 899999999999999997 67889999999999999999999888899999999999999
Q ss_pred CCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCC
Q 012103 146 LSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISG 225 (471)
Q Consensus 146 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 225 (471)
+|.+....+ .++.+..|+.++..+|++ ...|..+..+.++..+++.+|++....|..+ .++.|++++...|-++
T Consensus 123 ~n~~~el~~--~i~~~~~l~dl~~~~N~i--~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~- 196 (565)
T KOG0472|consen 123 SNELKELPD--SIGRLLDLEDLDATNNQI--SSLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE- 196 (565)
T ss_pred ccceeecCc--hHHHHhhhhhhhcccccc--ccCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-
Confidence 999997765 889999999999999998 5579999999999999999999995544444 4999999999999887
Q ss_pred cCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCccccchhccC
Q 012103 226 EIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEVPAELGK 304 (471)
Q Consensus 226 ~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 304 (471)
.+|+.++.+.+|..|++..|++. .+| .|.++..|.+++++.|++.-.+. ....++++..||+..|++. +.|+.+.-
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl 273 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL 273 (565)
T ss_pred cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHH
Confidence 89999999999999999999998 667 68999999999999999985555 5668999999999999999 88999999
Q ss_pred CCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccc----------------------------------------
Q 012103 305 FKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTG---------------------------------------- 344 (471)
Q Consensus 305 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~---------------------------------------- 344 (471)
+.+|++||+++|.++ ..|..++++ +|++|-+.+|.+..
T Consensus 274 LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~ 351 (565)
T KOG0472|consen 274 LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLP 351 (565)
T ss_pred hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCC
Confidence 999999999999999 678889998 99999999998731
Q ss_pred ------------------------cCchhhcCCC---CCceeeccCCcccc-----------------------ccchhh
Q 012103 345 ------------------------PIPPDMCKRG---TMRDLLMLQNKFTG-----------------------EIPATY 374 (471)
Q Consensus 345 ------------------------~~p~~~~~~~---~L~~L~l~~n~~~~-----------------------~~~~~~ 374 (471)
.+|...+... -....+++.|++.. -+|..+
T Consensus 352 ~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l 431 (565)
T KOG0472|consen 352 SESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLEL 431 (565)
T ss_pred CCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHH
Confidence 1111111111 13455555555441 344556
Q ss_pred hcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCE
Q 012103 375 ANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVV 454 (471)
Q Consensus 375 ~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 454 (471)
+.+++|..|++++|-+. .+|..++.+..|+.++++.|+|. .+|+.++....++.+-.++|+++...|..+..+.+|++
T Consensus 432 ~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred Hhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 67888999999998888 78888888888999999999887 67888888888888888889999777777999999999
Q ss_pred EeccCCcCcccCCCCCC
Q 012103 455 IKLNNNQLTGKIPASIY 471 (471)
Q Consensus 455 L~l~~n~~sg~ip~~~~ 471 (471)
|||.+|.+. .||..+|
T Consensus 510 LDL~nNdlq-~IPp~Lg 525 (565)
T KOG0472|consen 510 LDLQNNDLQ-QIPPILG 525 (565)
T ss_pred eccCCCchh-hCChhhc
Confidence 999999999 8998664
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-30 Score=253.98 Aligned_cols=379 Identities=25% Similarity=0.307 Sum_probs=213.9
Q ss_pred EEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEccC
Q 012103 67 VQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNL 146 (471)
Q Consensus 67 v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~ 146 (471)
+..||++++.+. .+|.. +..+++|+.|+++.|.+. ..|.+..++.+|+++.|.+|.+...+..+..+++|++|++++
T Consensus 47 L~~l~lsnn~~~-~fp~~-it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS-SFPIQ-ITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eEEeeccccccc-cCCch-hhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccch
Confidence 677888877765 66654 777777777777777765 445666666677777777766665555666666677776666
Q ss_pred CCCcccCCc--------------------------------------ccccCCCCCcE-EEccCCCCCCCCCCccccCCC
Q 012103 147 SGFSGVFPW--------------------------------------MSLGNMTNLVS-LSVGDNPFDPTPFPDQVVKLN 187 (471)
Q Consensus 147 n~l~~~~~~--------------------------------------~~~~~l~~L~~-L~l~~n~~~~~~~~~~l~~l~ 187 (471)
|++...++. .......++++ |+|++|.+. -..+..+.
T Consensus 124 N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~----~~dls~~~ 199 (1081)
T KOG0618|consen 124 NHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME----VLDLSNLA 199 (1081)
T ss_pred hccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhh----hhhhhhcc
Confidence 655432210 00011123333 666666652 12233444
Q ss_pred CCCEEEcccccCcc--------------------cCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccc
Q 012103 188 KLNWLYLTNCSIDG--------------------QIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQL 247 (471)
Q Consensus 188 ~L~~L~l~~n~l~~--------------------~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 247 (471)
+|+.+....|++.. ..+. ..-.+|+.+++++|++. .+|+++..+.+|+.+....|.+
T Consensus 200 ~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l 276 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRL 276 (1081)
T ss_pred chhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhH
Confidence 45555444444431 1110 11124555666665555 3455555566666666666655
Q ss_pred cccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccC-CC-CCCEEEcccCcCcccCch-
Q 012103 248 SGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGK-FK-KLVNLSLYTNKLTGALPQ- 324 (471)
Q Consensus 248 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-~~-~L~~L~L~~n~l~~~~~~- 324 (471)
. .+|..+...++|+.+.+.+|.++-.++.....++|++|++..|++. .+|+.+.. .. +++.+..+.|++. ..|.
T Consensus 277 ~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~ 353 (1081)
T KOG0618|consen 277 V-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSY 353 (1081)
T ss_pred H-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccc
Confidence 3 4555555555566666666655555555555666666666666665 33332211 11 1344444444443 1121
Q ss_pred hhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCC
Q 012103 325 ELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEV 404 (471)
Q Consensus 325 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L 404 (471)
.-...+.|+.|++.+|.++...-+.+.++..|+.|++++|++.......+.++..|+.|+|++|+++ .+|..+..++.|
T Consensus 354 ~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L 432 (1081)
T KOG0618|consen 354 EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRL 432 (1081)
T ss_pred cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhh
Confidence 1122345666666777666555555666667777777777666333345566667777777777776 666666667777
Q ss_pred CEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCc
Q 012103 405 NIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQ 461 (471)
Q Consensus 405 ~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 461 (471)
++|...+|++. ..| .+..++.|+.+|++.|+++...-..-...++|++||++||.
T Consensus 433 ~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 433 HTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred HHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 77777777766 344 56667777777777777754322222233667777777765
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-30 Score=252.24 Aligned_cols=378 Identities=24% Similarity=0.326 Sum_probs=268.6
Q ss_pred CEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEcc
Q 012103 66 FVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLN 145 (471)
Q Consensus 66 ~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~ 145 (471)
.++.++++.|.+- ..|.+.+.+.-+|+.|++++|.+. ..|..+..++.|+.|.++.|.+...+..+.++.+|+++.|.
T Consensus 22 ~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 22 ALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHHhhhccccccc-cCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheec
Confidence 3677788877765 444444555556999999998885 67888889999999999999998776688899999999999
Q ss_pred CCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEE-------------------cccccCcccCCcc
Q 012103 146 LSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLY-------------------LTNCSIDGQIPVE 206 (471)
Q Consensus 146 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~-------------------l~~n~l~~~~~~~ 206 (471)
.|.+... | ..+..+.+|++|+++.|++ ..+|..+..+..+..+. +..|.+.+.++..
T Consensus 100 ~n~l~~l-P-~~~~~lknl~~LdlS~N~f--~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~ 175 (1081)
T KOG0618|consen 100 NNRLQSL-P-ASISELKNLQYLDLSFNHF--GPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLID 175 (1081)
T ss_pred cchhhcC-c-hhHHhhhcccccccchhcc--CCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcc
Confidence 8887754 4 6888999999999999998 44555555554444444 4444444555555
Q ss_pred ccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccc--------------------cccCCccccCCCCCCEEeC
Q 012103 207 IGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQL--------------------SGKLPVGLRNLTNLANFDA 266 (471)
Q Consensus 207 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l--------------------~~~~~~~l~~l~~L~~L~l 266 (471)
+..+++ .+++.+|.+. .. .+..+.+|+.+....|++ +...+ -.-..+|+++++
T Consensus 176 i~~l~~--~ldLr~N~~~-~~--dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~di 248 (1081)
T KOG0618|consen 176 IYNLTH--QLDLRYNEME-VL--DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDI 248 (1081)
T ss_pred hhhhhe--eeecccchhh-hh--hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeec
Confidence 555544 5777777665 11 122333333333333333 21111 012345666667
Q ss_pred CCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccC
Q 012103 267 STNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPI 346 (471)
Q Consensus 267 ~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 346 (471)
+.|++++.+.++..+.+|+.+...+|.++ .+|..+....+|+.|++.+|.+. .+|....+.+.|++|+|..|++. ..
T Consensus 249 s~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~l 325 (1081)
T KOG0618|consen 249 SHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SL 325 (1081)
T ss_pred chhhhhcchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-cc
Confidence 76666655556666677777777777764 55666666666666666666666 66666777778888888888775 33
Q ss_pred chhh--------------------------cCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCccccc-cccc
Q 012103 347 PPDM--------------------------CKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVP-AGIW 399 (471)
Q Consensus 347 p~~~--------------------------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~ 399 (471)
|..+ ...+.|+.|.+.+|.+++.....+.++++|+.|+|++|++. .+| ..+.
T Consensus 326 p~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~ 404 (1081)
T KOG0618|consen 326 PDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLR 404 (1081)
T ss_pred chHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHh
Confidence 3311 11345677888888888877777888899999999999998 454 4577
Q ss_pred CCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCc
Q 012103 400 GLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463 (471)
Q Consensus 400 ~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~s 463 (471)
++..|+.|+||+|+++ .+|+.+.++..|+.|...+|++. ..| .+.++++|+++|++.|+++
T Consensus 405 kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 405 KLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred chHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence 8889999999999998 57788889999999999999998 788 7889999999999999998
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=236.77 Aligned_cols=358 Identities=17% Similarity=0.172 Sum_probs=220.9
Q ss_pred CCEEEEEcCCCCCc-cccCcccccCCCCCcEEeCCCCC------CCccccccccCCC-CCCEEeCCCCcCCccCCCCCCC
Q 012103 65 SFVQEIELSNRNLK-GTLPFDSICQLQALHKLSLGFNS------LYGEISKDLNNCV-KLQYLDLGNNVFSGSFPEISSL 136 (471)
Q Consensus 65 ~~v~~L~L~~~~l~-g~l~~~~~~~l~~L~~L~l~~~~------~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~l~~l 136 (471)
..|+.+.+....+. -.+...+|.++++|+.|.+..+. +...+|..+..++ +|+.|.+.++.+...+..+ ..
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~ 610 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RP 610 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-Cc
Confidence 34555555433332 12444557888888888886543 2334566666664 5888888888776554444 46
Q ss_pred CCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEE
Q 012103 137 NELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINL 216 (471)
Q Consensus 137 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 216 (471)
.+|+.|++.++.+.... ..+..+++|+.|+++++.. ...+| .+..+++|+.|++++|.....+|..+..+++|+.|
T Consensus 611 ~~L~~L~L~~s~l~~L~--~~~~~l~~Lk~L~Ls~~~~-l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLW--DGVHSLTGLRNIDLRGSKN-LKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred cCCcEEECcCccccccc--cccccCCCCCEEECCCCCC-cCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 78888888888776532 4567778888888877653 23334 36677788888888777666777777888888888
Q ss_pred EcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCc-
Q 012103 217 ELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFS- 295 (471)
Q Consensus 217 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~- 295 (471)
++++|...+.+|..+ ++++|++|++++|...+.+|.. .++|++|++++|.+...+.. ..+++|++|++.++...
T Consensus 687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~-~~l~~L~~L~l~~~~~~~ 761 (1153)
T PLN03210 687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSN-LRLENLDELILCEMKSEK 761 (1153)
T ss_pred eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccccccc-ccccccccccccccchhh
Confidence 888765555666654 6777888888777654444432 35677777777776533222 24566777766653321
Q ss_pred ------cccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccc
Q 012103 296 ------GEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGE 369 (471)
Q Consensus 296 ------~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~ 369 (471)
...+......++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|... .+++|+.|++++|.....
T Consensus 762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT 840 (1153)
T ss_pred ccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc
Confidence 0111112223566666666666555666666666667777766664434555544 456666666666644434
Q ss_pred cchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCc
Q 012103 370 IPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNR 437 (471)
Q Consensus 370 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~ 437 (471)
+|.. .++|+.|++++|.++ .+|.++..+++|+.|++++|.-...+|..+..+++|+.+++++|.
T Consensus 841 ~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 841 FPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 4332 245666666666666 556666666666666666644333455555666666666666653
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=235.76 Aligned_cols=305 Identities=21% Similarity=0.215 Sum_probs=137.6
Q ss_pred CcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccC
Q 012103 92 LHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGD 171 (471)
Q Consensus 92 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 171 (471)
|+.|++.++.+. .+|..+ ...+|++|++.++.+...+..+..+++|+.|+++++...+..| .+..+++|+.|++++
T Consensus 591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSD 666 (1153)
T ss_pred cEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecC
Confidence 555555554443 334333 2345555555555554433344445555555555444333333 244455555555555
Q ss_pred CCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccC
Q 012103 172 NPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKL 251 (471)
Q Consensus 172 n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 251 (471)
|.. ...+|..+..+++|+.|++++|.....+|..+ ++++|+.|++++|...+.+|.. ..+|++|++++|.+. .+
T Consensus 667 c~~-L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~l 740 (1153)
T PLN03210 667 CSS-LVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EF 740 (1153)
T ss_pred CCC-ccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cc
Confidence 433 23344455555555555555544333444333 4455555555554433333321 234455555555543 33
Q ss_pred CccccCCCCCCEEeCCCCcCccc-------cc-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCc
Q 012103 252 PVGLRNLTNLANFDASTNFLEGD-------LS-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALP 323 (471)
Q Consensus 252 ~~~l~~l~~L~~L~l~~n~~~~~-------~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~ 323 (471)
|..+ .+++|++|++.++..... .+ ....+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|
T Consensus 741 P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP 819 (1153)
T PLN03210 741 PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819 (1153)
T ss_pred cccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence 3322 344444444443221100 00 11123445555555554444455555555555555555543333444
Q ss_pred hhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCC
Q 012103 324 QELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPE 403 (471)
Q Consensus 324 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~ 403 (471)
..+ .+++|+.|++++|.....+|.. ..+++.|++++|.+. .+|.++..+++|+.|++++|+--..+|..+..++.
T Consensus 820 ~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~ 894 (1153)
T PLN03210 820 TGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKH 894 (1153)
T ss_pred CCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccC
Confidence 333 3445555555554333233321 234555555555554 34445555555555555553322234444444555
Q ss_pred CCEeecccC
Q 012103 404 VNIIDIALN 412 (471)
Q Consensus 404 L~~L~ls~n 412 (471)
|+.+++++|
T Consensus 895 L~~L~l~~C 903 (1153)
T PLN03210 895 LETVDFSDC 903 (1153)
T ss_pred CCeeecCCC
Confidence 555555554
|
syringae 6; Provisional |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.7e-26 Score=203.58 Aligned_cols=385 Identities=21% Similarity=0.204 Sum_probs=231.7
Q ss_pred CCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCC-CcCCccCC-CCCCCCCCCE
Q 012103 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGN-NVFSGSFP-EISSLNELQH 141 (471)
Q Consensus 64 ~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~-~l~~l~~L~~ 141 (471)
+...++|+|..|.|+ .+|+.+|..+++||.|||++|.|+.+-|.+|.++++|..|-+.+ |+|+..+. .|.++..|+.
T Consensus 66 P~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 66 PPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred CCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 466799999999998 89999999999999999999999999999999999887776666 88887766 8889999999
Q ss_pred EEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCc-cccCCCCCCEEEcccccCc------------ccCCcccc
Q 012103 142 LYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPD-QVVKLNKLNWLYLTNCSID------------GQIPVEIG 208 (471)
Q Consensus 142 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~l~~l~~L~~L~l~~n~l~------------~~~~~~l~ 208 (471)
|.+.-|++.-... ..+..+++|..|.+.+|.+ ..++. .+..+..++.+.+..|.+. ...|..++
T Consensus 145 LllNan~i~Cir~-~al~dL~~l~lLslyDn~~--q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 145 LLLNANHINCIRQ-DALRDLPSLSLLSLYDNKI--QSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred HhcChhhhcchhH-HHHHHhhhcchhcccchhh--hhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 9998888876665 7888889999999998887 33444 5667777777777766521 11122222
Q ss_pred CCCCCcEEEcccCcCCCcCCccccCCCCCCeE---eeccccccccCC-ccccCCCCCCEEeCCCCcCccccc-cCCCCCC
Q 012103 209 NLTELINLELSDNNISGEIPSEIGNLVKLWRL---ELYNNQLSGKLP-VGLRNLTNLANFDASTNFLEGDLS-EVRFLTN 283 (471)
Q Consensus 209 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L---~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~ 283 (471)
...-..-..+.+..+..+.+..+.. .++.+ ..+.+...+..| ..|..+++|+.|++++|+++..-+ +|.....
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c--~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~ 299 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLC--SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAE 299 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhh--hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhh
Confidence 2211111122222222111111110 11111 111111211222 224556666666666666655444 5556666
Q ss_pred CCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCccccc-----Cchhh--------
Q 012103 284 LVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGP-----IPPDM-------- 350 (471)
Q Consensus 284 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-----~p~~~-------- 350 (471)
+++|.+..|++...--..+.++..|++|+|.+|+++...|..|.....|..|++-.|.+.-. +.+|+
T Consensus 300 l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~ 379 (498)
T KOG4237|consen 300 LQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGN 379 (498)
T ss_pred hhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCC
Confidence 66666666665543334455556666666666666655555555556666666655544210 00011
Q ss_pred ---cCCCCCceeeccCCcccc---ccchh---------hhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccc
Q 012103 351 ---CKRGTMRDLLMLQNKFTG---EIPAT---------YANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIE 415 (471)
Q Consensus 351 ---~~~~~L~~L~l~~n~~~~---~~~~~---------~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~ 415 (471)
.....++.+.+++..+.. ..|+. =..|+.+.++.=..|+....+|..+. ..-+.+.+.+|.++
T Consensus 380 ~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP--~d~telyl~gn~~~ 457 (498)
T KOG4237|consen 380 PRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIP--VDVTELYLDGNAIT 457 (498)
T ss_pred CCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCC--chhHHHhcccchhc
Confidence 112234445554433221 11111 12244454443233333335565443 23467888888888
Q ss_pred cccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCC
Q 012103 416 GPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNN 460 (471)
Q Consensus 416 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n 460 (471)
.+|.. .+.+| .+++++|+++-.--..|.++++|.++-|++|
T Consensus 458 -~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 458 -SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred -ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 45555 56677 8999999998666677888899999988876
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-22 Score=206.04 Aligned_cols=266 Identities=24% Similarity=0.320 Sum_probs=154.9
Q ss_pred CCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEE
Q 012103 137 NELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINL 216 (471)
Q Consensus 137 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 216 (471)
..-..|+++.+.++.. | ..+. ++|+.|++++|+++ .+|. .+++|++|++++|+++ .+|.. .++|+.|
T Consensus 201 ~~~~~LdLs~~~LtsL-P-~~l~--~~L~~L~L~~N~Lt--~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLTTL-P-DCLP--AHITTLVIPDNNLT--SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCCcC-C-cchh--cCCCEEEccCCcCC--CCCC---CCCCCcEEEecCCccC-cccCc---cccccee
Confidence 3455677777777643 3 2332 36777777777763 2343 2466777777777776 34432 3467777
Q ss_pred EcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCcc
Q 012103 217 ELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSG 296 (471)
Q Consensus 217 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~ 296 (471)
++++|.+. .+|.. ...|+.|++++|.++ .+|. ..++|+.|++++|++.+.... ..+|+.|++++|.++
T Consensus 268 ~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~- 335 (788)
T PRK15387 268 SIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLT- 335 (788)
T ss_pred eccCCchh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCccccCCCC---cccccccccccCccc-
Confidence 77777766 34432 245667777777766 3443 235677777777766643221 234666667777666
Q ss_pred ccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhc
Q 012103 297 EVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYAN 376 (471)
Q Consensus 297 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 376 (471)
.+|.. ..+|+.|++++|+++ .+|.. ..+|+.|++++|.++ .+|.. ..+|+.|++++|.+++ +|..
T Consensus 336 ~LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l--- 400 (788)
T PRK15387 336 SLPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL--- 400 (788)
T ss_pred ccccc---ccccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---
Confidence 34431 135667777777766 34432 235666666666665 45542 2356666666666663 3332
Q ss_pred CCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhh
Q 012103 377 CLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEIS 447 (471)
Q Consensus 377 ~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~ 447 (471)
.++|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|..+.++++|+.|++++|++++..|..+.
T Consensus 401 ~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 401 PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence 245666666666666 34542 234566666666665 4566666666666666666666666666553
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-21 Score=198.19 Aligned_cols=265 Identities=21% Similarity=0.265 Sum_probs=151.4
Q ss_pred CCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEc
Q 012103 115 KLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYL 194 (471)
Q Consensus 115 ~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l 194 (471)
.-..|+++++.++..++.+. ++|+.|++.+|+++.... ..++|++|++++|+++ .+|.. .++|+.|++
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~-----lp~~Lk~LdLs~N~Lt--sLP~l---p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLT--SLPVL---PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC-----CCCCCcEEEecCCccC--cccCc---ccccceeec
Confidence 45566777776665444443 356667777766664321 2456677777776663 23322 346666667
Q ss_pred ccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccc
Q 012103 195 TNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGD 274 (471)
Q Consensus 195 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 274 (471)
++|.+. .+|.. .++|+.|++++|.++ .+|.. .++|++|++++|.+++ +|.. ...|+.|++++|.+.+.
T Consensus 270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~L 337 (788)
T PRK15387 270 FSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTSL 337 (788)
T ss_pred cCCchh-hhhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCccccc
Confidence 666665 33332 235666667776666 34432 3456677777766663 3332 23455666666666542
Q ss_pred cccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCC
Q 012103 275 LSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRG 354 (471)
Q Consensus 275 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~ 354 (471)
+. ...+|++|++++|+++ .+|.. .++|+.|++++|.+. .+|.. ..+|+.|++++|.++ .+|.. .+
T Consensus 338 P~---lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s 402 (788)
T PRK15387 338 PT---LPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---PS 402 (788)
T ss_pred cc---cccccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc---cc
Confidence 21 1245667777777666 33432 235666666666666 34432 235666777777666 34432 24
Q ss_pred CCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhh
Q 012103 355 TMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIE 423 (471)
Q Consensus 355 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~ 423 (471)
+|+.|++++|+++. +|.. ..+|+.|++++|+++ .+|..+..++.|+.|++++|++++..+..+.
T Consensus 403 ~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 403 ELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred CCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence 56667777776663 4432 234566667777766 5666666666777777777777666555553
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-20 Score=193.08 Aligned_cols=333 Identities=19% Similarity=0.258 Sum_probs=209.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCC----CCCCCCCCceeec----------------eEeCCCCCCEEEEEcCCCCCc
Q 012103 19 CINSDELQILLNLKTSLKDSKSSIFS----SWVSNNHFCNFTG----------------ITCNSDSSFVQEIELSNRNLK 78 (471)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~~~~~----~w~~~~~~c~~~g----------------v~c~~~~~~v~~L~L~~~~l~ 78 (471)
...++|.+.+++..+.+..|. ... .|...+++|.-+. |.|. .+.|+.+..-+....
T Consensus 59 ~~~~~~~~~~~~~~~~l~~p~--~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~--~~~vt~l~~~g~~~~ 134 (754)
T PRK15370 59 TASPEEIKSKFECLRMLAFPA--YADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGG--GKSVTYTRVTESEQA 134 (754)
T ss_pred CCCHHHHHHHHHHHHHhcCCc--hhhccccccCCCCcccccCCcchhhheeeecCCceEEecC--CCccccccccccccc
Confidence 345789999999999997773 344 4999999997654 4454 355666655543222
Q ss_pred cccCcccccCCCCCcEEeC-----CCCCCCccc---ccc---c--cCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEcc
Q 012103 79 GTLPFDSICQLQALHKLSL-----GFNSLYGEI---SKD---L--NNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLN 145 (471)
Q Consensus 79 g~l~~~~~~~l~~L~~L~l-----~~~~~~~~~---~~~---~--~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~ 145 (471)
..- ..-..-..-+. ..+.-.+.. ..+ + +-..+.+.|+++++.++..+..+. ++|+.|+++
T Consensus 135 ~~~-----~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls 207 (754)
T PRK15370 135 SSA-----SGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTTIPACIP--EQITTLILD 207 (754)
T ss_pred ccC-----CCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcCcCCcccc--cCCcEEEec
Confidence 110 00000000000 000000000 000 1 111356778887777776544443 467788888
Q ss_pred CCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCC
Q 012103 146 LSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISG 225 (471)
Q Consensus 146 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 225 (471)
+|.++.... .+. ++|+.|++++|.+. .+|..+. ++|+.|++++|.+. .+|..+. .+|+.|++++|++.
T Consensus 208 ~N~LtsLP~--~l~--~nL~~L~Ls~N~Lt--sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~- 275 (754)
T PRK15370 208 NNELKSLPE--NLQ--GNIKTLYANSNQLT--SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS- 275 (754)
T ss_pred CCCCCcCCh--hhc--cCCCEEECCCCccc--cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-
Confidence 887775432 222 47888888888773 3455442 46788888888877 5666554 46888888888877
Q ss_pred cCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCC
Q 012103 226 EIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKF 305 (471)
Q Consensus 226 ~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 305 (471)
.+|..+. .+|++|++++|.++ .+|..+. +.|+.|++++|.++..+..+ .++|+.|++++|.+++ +|..+.
T Consensus 276 ~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~-- 345 (754)
T PRK15370 276 CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTS-LPASLP-- 345 (754)
T ss_pred ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccccCCccc--cccceeccccCCcccc-CChhhc--
Confidence 4666543 47888888888877 3444332 46778888888877543322 3678888888888874 565543
Q ss_pred CCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhh----hcCCCCc
Q 012103 306 KKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATY----ANCLTLQ 381 (471)
Q Consensus 306 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~----~~~~~L~ 381 (471)
++|+.|++++|.+. .+|..+. +.|+.|++++|.++ .+|..+. ..|+.|++++|++. .+|..+ ..++.+.
T Consensus 346 ~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~ 418 (754)
T PRK15370 346 PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPT 418 (754)
T ss_pred CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCcc
Confidence 67888888888887 4665543 57888888888887 6776654 36888888888887 444433 3457788
Q ss_pred EEEccCCcCc
Q 012103 382 RFRVSNNSLK 391 (471)
Q Consensus 382 ~L~L~~n~~~ 391 (471)
.+++.+|.+.
T Consensus 419 ~L~L~~Npls 428 (754)
T PRK15370 419 RIIVEYNPFS 428 (754)
T ss_pred EEEeeCCCcc
Confidence 8888888887
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-23 Score=186.18 Aligned_cols=382 Identities=18% Similarity=0.196 Sum_probs=257.5
Q ss_pred EEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEccC-
Q 012103 69 EIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNL- 146 (471)
Q Consensus 69 ~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~- 146 (471)
.++-++.+++ .+|.+ --+.-..++|..|+|+..-+.+|+.+++||.|||++|.|+.+-| +|.+++.|..|-+.+
T Consensus 50 ~VdCr~~GL~-eVP~~---LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 50 IVDCRGKGLT-EVPAN---LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred eEEccCCCcc-cCccc---CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC
Confidence 3455556665 55543 12346779999999998778899999999999999999998888 899999998887777
Q ss_pred CCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCC--
Q 012103 147 SGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNIS-- 224 (471)
Q Consensus 147 n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-- 224 (471)
|+++.... ..|.++..|+-|.+..|++. -...+.+..++++..|.+.+|.+...-..+|..+.+++.+.+..|.+.
T Consensus 126 NkI~~l~k-~~F~gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd 203 (498)
T KOG4237|consen 126 NKITDLPK-GAFGGLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD 203 (498)
T ss_pred Cchhhhhh-hHhhhHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc
Confidence 88887665 89999999999999999883 334578889999999999999988443447888889999998887632
Q ss_pred ----------CcCCccccCCCCCCeEeeccccccccCCccccC-CCCCCEEeCCCCcCccccc--cCCCCCCCCEEEccC
Q 012103 225 ----------GEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRN-LTNLANFDASTNFLEGDLS--EVRFLTNLVTLQLFK 291 (471)
Q Consensus 225 ----------~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~L~l~~ 291 (471)
...|..+++.....-..+.+.++...-+..+.. +..+.+-..+.+...+..| .+..+++|+.|++++
T Consensus 204 CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn 283 (498)
T KOG4237|consen 204 CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN 283 (498)
T ss_pred cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC
Confidence 122333344443444444444443222222221 1122211222333333444 678889999999999
Q ss_pred CcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccc--
Q 012103 292 NQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGE-- 369 (471)
Q Consensus 292 n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~-- 369 (471)
|++++.-+.+|....++++|.|..|++...-...+.++..|+.|+|.+|+++...|.+|.....|..|.+-.|.+.-.
T Consensus 284 N~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~ 363 (498)
T KOG4237|consen 284 NKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCR 363 (498)
T ss_pred CccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccc
Confidence 999888788888888899999999988755555677888889999999998877777888888888888887755421
Q ss_pred ---cchhh-----------hcCCCCcEEEccCCcCcc---cccc---------cccCCCCCCEe-ecccCccccccchhh
Q 012103 370 ---IPATY-----------ANCLTLQRFRVSNNSLKG---TVPA---------GIWGLPEVNII-DIALNQIEGPITKDI 422 (471)
Q Consensus 370 ---~~~~~-----------~~~~~L~~L~L~~n~~~~---~~~~---------~~~~~~~L~~L-~ls~n~~~~~~~~~~ 422 (471)
+.+|+ +.-..++.+.+++..+.+ .-|+ +-..++.+.++ ..|+..+. .+|..+
T Consensus 364 l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~i 442 (498)
T KOG4237|consen 364 LAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGI 442 (498)
T ss_pred hHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCC
Confidence 11111 111234455555544431 1111 11223333333 33333333 344332
Q ss_pred hccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCc
Q 012103 423 ENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463 (471)
Q Consensus 423 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~s 463 (471)
. ..-.++++.+|.++ .+|.. .+..| .+|+++|+++
T Consensus 443 P--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~ 477 (498)
T KOG4237|consen 443 P--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRIS 477 (498)
T ss_pred C--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCcee
Confidence 2 23457899999999 77777 56778 9999999998
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.2e-20 Score=188.92 Aligned_cols=247 Identities=23% Similarity=0.364 Sum_probs=162.5
Q ss_pred CCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEe
Q 012103 162 TNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLE 241 (471)
Q Consensus 162 ~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 241 (471)
.+...|+++++.++ .+|..+. +.|+.|++++|.++ .+|..+. ++|+.|++++|.++ .+|..+. ..|+.|+
T Consensus 178 ~~~~~L~L~~~~Lt--sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLT--TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcC--cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEE
Confidence 35677888887773 3555442 47888888888887 4565543 47888888888877 5665543 3688888
Q ss_pred eccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCccc
Q 012103 242 LYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGA 321 (471)
Q Consensus 242 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~ 321 (471)
+++|.+. .+|..+. ++|+.|++++|.+...+..+ .++|+.|++++|+++ .+|..+. ++|+.|++++|.++ .
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~ 318 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-A 318 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccCcccccc--CCCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-c
Confidence 8888877 5565543 46788888888777433333 257788888888777 3444332 36777777777777 3
Q ss_pred CchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCC
Q 012103 322 LPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGL 401 (471)
Q Consensus 322 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~ 401 (471)
+|..+ .++|+.|++++|.++ .+|..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|.++ .+|..+.
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~-- 387 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP-- 387 (754)
T ss_pred CCccc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--
Confidence 45433 256777777777776 4665553 57777777777776 455544 256777777777777 4555443
Q ss_pred CCCCEeecccCccccccchhh----hccCCCCeeeCCCCcCc
Q 012103 402 PEVNIIDIALNQIEGPITKDI----ENAKALNLLFAEYNRLS 439 (471)
Q Consensus 402 ~~L~~L~ls~n~~~~~~~~~~----~~l~~L~~L~l~~n~l~ 439 (471)
..|+.|++++|++. .+|..+ ..++.+..+++.+|.++
T Consensus 388 ~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 35777777777776 344433 33466677777777776
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-20 Score=179.40 Aligned_cols=277 Identities=19% Similarity=0.213 Sum_probs=159.4
Q ss_pred EEEccCCCCCCCCCCccccCCCCCCEEEcccccCcc----cCCccccCCCCCcEEEcccCcCCC------cCCccccCCC
Q 012103 166 SLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDG----QIPVEIGNLTELINLELSDNNISG------EIPSEIGNLV 235 (471)
Q Consensus 166 ~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~------~~p~~~~~l~ 235 (471)
.|+|..+.+........+..+.+|++++++++.++. .++..+...++++.++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 356666666545555555666667777777777642 234445556667777776665542 1122333344
Q ss_pred CCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCcc----ccchhccCC-CCCCE
Q 012103 236 KLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSG----EVPAELGKF-KKLVN 310 (471)
Q Consensus 236 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~l~~~-~~L~~ 310 (471)
+|++|++++|.+.+..+..+..+.. . ++|++|++++|.+++ .+...+..+ ++|+.
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~-------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~ 141 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLR-------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEK 141 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhc-------------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceE
Confidence 4444444444443322222222211 1 336666666665552 122334444 56666
Q ss_pred EEcccCcCccc----CchhhcCCCCCCEEeccCCcccc----cCchhhcCCCCCceeeccCCccccc----cchhhhcCC
Q 012103 311 LSLYTNKLTGA----LPQELGSWAEFDFIDVSENLLTG----PIPPDMCKRGTMRDLLMLQNKFTGE----IPATYANCL 378 (471)
Q Consensus 311 L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~----~~p~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~ 378 (471)
|++++|.+++. ++..+..+..|++|++++|.+++ .++..+...++|+.|++++|.+.+. +...+..++
T Consensus 142 L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~ 221 (319)
T cd00116 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK 221 (319)
T ss_pred EEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC
Confidence 77766666532 23334455667777777776653 2233344456777777777766532 334455677
Q ss_pred CCcEEEccCCcCccccccccc-----CCCCCCEeecccCcccc----ccchhhhccCCCCeeeCCCCcCccc----chhh
Q 012103 379 TLQRFRVSNNSLKGTVPAGIW-----GLPEVNIIDIALNQIEG----PITKDIENAKALNLLFAEYNRLSGE----LPEE 445 (471)
Q Consensus 379 ~L~~L~L~~n~~~~~~~~~~~-----~~~~L~~L~ls~n~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~----~p~~ 445 (471)
+|++|++++|.+++.....+. ..+.|+.|++++|.+++ .+...+..+++|+.+++++|.++.. +...
T Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~ 301 (319)
T cd00116 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES 301 (319)
T ss_pred CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence 788888888877753222211 24678888888888863 2344556667888888888888754 4444
Q ss_pred hhcC-CCCCEEeccCCcC
Q 012103 446 ISKA-TSLVVIKLNNNQL 462 (471)
Q Consensus 446 l~~l-~~L~~L~l~~n~~ 462 (471)
+... +.|+.+++.+|++
T Consensus 302 ~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 302 LLEPGNELESLWVKDDSF 319 (319)
T ss_pred HhhcCCchhhcccCCCCC
Confidence 4444 6788888888875
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-20 Score=179.11 Aligned_cols=279 Identities=20% Similarity=0.232 Sum_probs=166.2
Q ss_pred EEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCC---CCCccccCCCCCCEEEcccccCcc------cCCccccCCC
Q 012103 141 HLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPT---PFPDQVVKLNKLNWLYLTNCSIDG------QIPVEIGNLT 211 (471)
Q Consensus 141 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~l~~l~~L~~L~l~~n~l~~------~~~~~l~~l~ 211 (471)
.|+|..+.+++..-...+..+++|+.++++++.++.. .++..+...+.+++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4677777777432225567778899999999988432 245566778889999999988762 2345677788
Q ss_pred CCcEEEcccCcCCCcCCccccCCCC---CCeEeecccccccc----CCccccCC-CCCCEEeCCCCcCccccccCCCCCC
Q 012103 212 ELINLELSDNNISGEIPSEIGNLVK---LWRLELYNNQLSGK----LPVGLRNL-TNLANFDASTNFLEGDLSEVRFLTN 283 (471)
Q Consensus 212 ~L~~L~L~~n~l~~~~p~~~~~l~~---L~~L~l~~n~l~~~----~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~~~ 283 (471)
+|+.|++++|.+.+..+..+..+.. |++|++++|.+.+. +...+..+ ++|+++++++|.+++...
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~------- 154 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC------- 154 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH-------
Confidence 9999999999998666666655555 88888888877631 22233444 556666666665552111
Q ss_pred CCEEEccCCcCccccchhccCCCCCCEEEcccCcCccc----CchhhcCCCCCCEEeccCCccccc----CchhhcCCCC
Q 012103 284 LVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGA----LPQELGSWAEFDFIDVSENLLTGP----IPPDMCKRGT 355 (471)
Q Consensus 284 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~p~~~~~~~~ 355 (471)
..++..+..+++|++|++++|.+.+. ++..+...++|++|++++|.+++. ++..+..+++
T Consensus 155 ------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~ 222 (319)
T cd00116 155 ------------EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS 222 (319)
T ss_pred ------------HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCC
Confidence 01122233334445555555444421 122233334555555555554321 2223344556
Q ss_pred CceeeccCCccccccchhhh-----cCCCCcEEEccCCcCcc----cccccccCCCCCCEeecccCccccc----cchhh
Q 012103 356 MRDLLMLQNKFTGEIPATYA-----NCLTLQRFRVSNNSLKG----TVPAGIWGLPEVNIIDIALNQIEGP----ITKDI 422 (471)
Q Consensus 356 L~~L~l~~n~~~~~~~~~~~-----~~~~L~~L~L~~n~~~~----~~~~~~~~~~~L~~L~ls~n~~~~~----~~~~~ 422 (471)
|+.|++++|.+++.....+. ..+.|++|++++|.+++ .+...+..+++|+++++++|.+... ....+
T Consensus 223 L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~ 302 (319)
T cd00116 223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESL 302 (319)
T ss_pred CCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHH
Confidence 66666666665542222221 13577777777777752 2334455567788888888877754 33444
Q ss_pred hcc-CCCCeeeCCCCcC
Q 012103 423 ENA-KALNLLFAEYNRL 438 (471)
Q Consensus 423 ~~l-~~L~~L~l~~n~l 438 (471)
... +.++++++.+|.+
T Consensus 303 ~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 303 LEPGNELESLWVKDDSF 319 (319)
T ss_pred hhcCCchhhcccCCCCC
Confidence 444 6777777777653
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-20 Score=149.99 Aligned_cols=165 Identities=23% Similarity=0.402 Sum_probs=103.7
Q ss_pred CCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCce
Q 012103 279 RFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRD 358 (471)
Q Consensus 279 ~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~ 358 (471)
-.+.+++.|.+++|.++ .+|..++.+.+|+.|++.+|++. .+|.++..++.|+.|+++-|++. ..|..++.++.|+.
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 34455666666666666 45555666666666666666666 55666666666666666666665 56666666666666
Q ss_pred eeccCCcccc-ccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCc
Q 012103 359 LLMLQNKFTG-EIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNR 437 (471)
Q Consensus 359 L~l~~n~~~~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~ 437 (471)
|++..|++.. .+|..|..+..|..|++.+|.+. .+|..++.+++|+.|.+.+|.+. .+|..++.++.|++|.+.+|+
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 6666665543 35555666666666666666666 56666666666666666666655 456666666666666666666
Q ss_pred CcccchhhhhcC
Q 012103 438 LSGELPEEISKA 449 (471)
Q Consensus 438 l~~~~p~~l~~l 449 (471)
++ .+|.+++++
T Consensus 185 l~-vlppel~~l 195 (264)
T KOG0617|consen 185 LT-VLPPELANL 195 (264)
T ss_pred ee-ecChhhhhh
Confidence 66 555555554
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-19 Score=145.09 Aligned_cols=154 Identities=27% Similarity=0.415 Sum_probs=76.6
Q ss_pred CCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEec
Q 012103 258 LTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDV 337 (471)
Q Consensus 258 l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 337 (471)
+.+++.|.+++|+++..+|.+..+.+|+.|++++|++. .+|..+..+++|+.|+++-|++. ..|..++.++.|+.||+
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 34444445555555544444445555555555555554 44445555555555555555544 44445555555555555
Q ss_pred cCCccc-ccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccc
Q 012103 338 SENLLT-GPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIE 415 (471)
Q Consensus 338 ~~n~l~-~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~ 415 (471)
.+|++. ..+|..+..+..|+.|.+++|.+. .+|...+++++|+.|.+.+|.+- .+|..++.+++|+.|.+++|+++
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 555443 234444444445555555555544 44444455555555555555544 44555555555555555555554
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-14 Score=148.45 Aligned_cols=149 Identities=34% Similarity=0.515 Sum_probs=122.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCc-----eeeceEeCCCC----CCEEEEEcCCCCCccccCcccccCC
Q 012103 19 CINSDELQILLNLKTSLKDSKSSIFSSWVSNNHFC-----NFTGITCNSDS----SFVQEIELSNRNLKGTLPFDSICQL 89 (471)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c-----~~~gv~c~~~~----~~v~~L~L~~~~l~g~l~~~~~~~l 89 (471)
...++|+.||+++|+++..+. ..+|.. ++| .|.||.|.... ..|+.|+|+++.+.|.+|.. +..+
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~---~~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~-i~~L 441 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPL---RFGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPND-ISKL 441 (623)
T ss_pred ccCchHHHHHHHHHHhcCCcc---cCCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHH-HhCC
Confidence 446789999999999987653 247964 344 79999996321 25899999999999999876 9999
Q ss_pred CCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEccCCCCcccCCcccccCC-CCCcEE
Q 012103 90 QALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNM-TNLVSL 167 (471)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L 167 (471)
++|+.|++++|.+.|.+|..+..+++|+.|+|++|.++|.+| .+.++++|++|++++|.+++..| ..+... .++..+
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP-~~l~~~~~~~~~l 520 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP-AALGGRLLHRASF 520 (623)
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCC-hHHhhccccCceE
Confidence 999999999999999999999999999999999999999888 78899999999999999998888 555543 456667
Q ss_pred EccCCCC
Q 012103 168 SVGDNPF 174 (471)
Q Consensus 168 ~l~~n~~ 174 (471)
++.+|..
T Consensus 521 ~~~~N~~ 527 (623)
T PLN03150 521 NFTDNAG 527 (623)
T ss_pred EecCCcc
Confidence 7766653
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-12 Score=128.70 Aligned_cols=197 Identities=28% Similarity=0.421 Sum_probs=102.3
Q ss_pred eEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCC-CCCEEEccCCcCccccchhccCCCCCCEEEcccCc
Q 012103 239 RLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLT-NLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNK 317 (471)
Q Consensus 239 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~ 317 (471)
.+....+.+.... ..+...+.++.+++.+|.++...+...... +|+.|++++|.+. .+|..+..++.|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 4555555543222 223344556666666666654444444442 5666666666665 344445556666666666666
Q ss_pred CcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCccccccc
Q 012103 318 LTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAG 397 (471)
Q Consensus 318 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~ 397 (471)
+. .+|......+.|+.|++++|++. .+|........|+.+.+++|++. ..+..+..+..+..+.+.+|++. .++..
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~ 250 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPES 250 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccch
Confidence 65 34433334555666666666665 55544434444566666655433 23344455555555555555555 22444
Q ss_pred ccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccch
Q 012103 398 IWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELP 443 (471)
Q Consensus 398 ~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 443 (471)
+..++.+++|++++|+++...+ +..+..++.|++++|.+....|
T Consensus 251 ~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 251 IGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 4455555555555555553322 4555555555555555554333
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.5e-14 Score=133.56 Aligned_cols=177 Identities=25% Similarity=0.361 Sum_probs=94.9
Q ss_pred CEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCc
Q 012103 262 ANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENL 341 (471)
Q Consensus 262 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 341 (471)
...|++.|++...+..+..+-.|+.+.++.|.+. .+|..+.++..|.+++++.|++. ..|..+..++ |+.|-+++|+
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence 3455555555533334444445555555555555 45555555555555555555555 4444444443 5555555555
Q ss_pred ccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchh
Q 012103 342 LTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKD 421 (471)
Q Consensus 342 l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~ 421 (471)
++ .+|..++..+.|..|+.+.|.+. .+|..++++.+|+.|.+..|.+. .+|..+..+ .|..||++.|++. .+|-+
T Consensus 155 l~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~ 229 (722)
T KOG0532|consen 155 LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVD 229 (722)
T ss_pred cc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchh
Confidence 54 55555555555555555555555 44555555555555555555555 444444432 3555555555555 35555
Q ss_pred hhccCCCCeeeCCCCcCcccchhhhh
Q 012103 422 IENAKALNLLFAEYNRLSGELPEEIS 447 (471)
Q Consensus 422 ~~~l~~L~~L~l~~n~l~~~~p~~l~ 447 (471)
|.+++.|++|.|.+|.+. .-|..++
T Consensus 230 fr~m~~Lq~l~LenNPLq-SPPAqIC 254 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQ-SPPAQIC 254 (722)
T ss_pred hhhhhhheeeeeccCCCC-CChHHHH
Confidence 555555555555555555 4444443
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.8e-12 Score=123.04 Aligned_cols=193 Identities=32% Similarity=0.485 Sum_probs=87.6
Q ss_pred EEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCC-CCcEEEccCCCCCCCCCCccccCCCCCCEEEccc
Q 012103 118 YLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMT-NLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTN 196 (471)
Q Consensus 118 ~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~ 196 (471)
.+++..+.+...+..+..++.++.|++.+|.++...+ ...... +|+.|++++|.+ ..+|..+..+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~--~~~~~~~nL~~L~l~~N~i--~~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPP--LIGLLKSNLKELDLSDNKI--ESLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCcc--ccccchhhcccccccccch--hhhhhhhhccccccccccCC
Confidence 4566666554444444444556666666655554433 223332 555555555554 22233444555555555555
Q ss_pred ccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc
Q 012103 197 CSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS 276 (471)
Q Consensus 197 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 276 (471)
|++. .+|...+..++|+.|++++|.+. .+|........|+++.+++| .....+.
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N------------------------~~~~~~~ 226 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNN------------------------SIIELLS 226 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCC------------------------cceecch
Confidence 5554 23333334444555555555544 34433333333444444444 3222222
Q ss_pred cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCccc
Q 012103 277 EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLT 343 (471)
Q Consensus 277 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 343 (471)
.+..+.++..+.+.+|++. .++..++.++.+++|++++|.+. .++. ++...+++.|++++|.+.
T Consensus 227 ~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 227 SLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred hhhhcccccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCcccc
Confidence 3333344444444444443 22334444444555555555444 2222 444444555555555444
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.3e-13 Score=122.68 Aligned_cols=207 Identities=20% Similarity=0.210 Sum_probs=100.7
Q ss_pred CCCCCCEEeCCCCcCCccCC--CCCCCCCCCEEEccCCCCcccCCc-ccccCCCCCcEEEccCCCCCCCCCCccccCCCC
Q 012103 112 NCVKLQYLDLGNNVFSGSFP--EISSLNELQHLYLNLSGFSGVFPW-MSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNK 188 (471)
Q Consensus 112 ~l~~L~~L~l~~n~l~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~ 188 (471)
++.+|+.+.|.++.+..... ....+++++.|++++|-+..-.+. .....+++|+.|+++.|++....-...-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 34455555555554432221 333455555555555544432221 123445555666665555421111111123455
Q ss_pred CCEEEcccccCccc-CCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCC--ccccCCCCCCEEe
Q 012103 189 LNWLYLTNCSIDGQ-IPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLP--VGLRNLTNLANFD 265 (471)
Q Consensus 189 L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~ 265 (471)
|+.|.++.|+++.. +-..+..+|+|+.|++..|............++.|++|+|++|.+. ..+ ...+.++.|+.|+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhh
Confidence 66666666666532 1222345566666666666422222233344556666666666554 222 3345566666666
Q ss_pred CCCCcCccccc-c------CCCCCCCCEEEccCCcCcc-ccchhccCCCCCCEEEcccCcCc
Q 012103 266 ASTNFLEGDLS-E------VRFLTNLVTLQLFKNQFSG-EVPAELGKFKKLVNLSLYTNKLT 319 (471)
Q Consensus 266 l~~n~~~~~~~-~------~~~~~~L~~L~l~~n~l~~-~~~~~l~~~~~L~~L~L~~n~l~ 319 (471)
++.+.++..-. + ...+++|++|++..|++.. .....+..+++|+.|.+..|.+.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 66666553211 2 2445667777777776631 11123344556666666566554
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.3e-11 Score=124.96 Aligned_cols=112 Identities=22% Similarity=0.408 Sum_probs=94.5
Q ss_pred CceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCC
Q 012103 356 MRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEY 435 (471)
Q Consensus 356 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~ 435 (471)
++.|++++|.+.+.+|..+..+++|+.|+|++|.+.|.+|..+..+++|+.|+|++|++.+.+|+.+.++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67788888888888888888888888889888888888888888888888999999988888888888888899999998
Q ss_pred CcCcccchhhhhcC-CCCCEEeccCCcCcccCC
Q 012103 436 NRLSGELPEEISKA-TSLVVIKLNNNQLTGKIP 467 (471)
Q Consensus 436 n~l~~~~p~~l~~l-~~L~~L~l~~n~~sg~ip 467 (471)
|+++|.+|..+... .++..+++.+|+..+.+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 88888888888764 466788888887665454
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.7e-13 Score=126.76 Aligned_cols=168 Identities=29% Similarity=0.455 Sum_probs=79.3
Q ss_pred EEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCc
Q 012103 216 LELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFS 295 (471)
Q Consensus 216 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~ 295 (471)
.+++.|.+. ++|..+..+..|+.+.+..|.+. .+|..+.++..|++++++.|++...+..+..++ |+.|.+++|+++
T Consensus 80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~ 156 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLT 156 (722)
T ss_pred hhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccc
Confidence 344444443 44444444444444444444444 344444444444444444444443332222222 455555555554
Q ss_pred cccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhh
Q 012103 296 GEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYA 375 (471)
Q Consensus 296 ~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 375 (471)
.+|..++..+.|..||.+.|.+. .+|..++++..|+.|++..|.+. .+|+.++.+ .|..||++.|+++ .+|..|.
T Consensus 157 -~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr 231 (722)
T KOG0532|consen 157 -SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFR 231 (722)
T ss_pred -cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhh
Confidence 44444444445555555555554 34444455555555555555554 444444422 3455555555555 4455555
Q ss_pred cCCCCcEEEccCCcCc
Q 012103 376 NCLTLQRFRVSNNSLK 391 (471)
Q Consensus 376 ~~~~L~~L~L~~n~~~ 391 (471)
+|..|++|-|.+|.+.
T Consensus 232 ~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 232 KMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhheeeeeccCCCC
Confidence 5555555555555554
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.4e-12 Score=118.93 Aligned_cols=160 Identities=18% Similarity=0.144 Sum_probs=74.0
Q ss_pred cCCCCCCeEeeccccccccCC-ccccCCCCCCEEeCCCCcCccccc---cCCCCCCCCEEEccCCcCccccch-hccCCC
Q 012103 232 GNLVKLWRLELYNNQLSGKLP-VGLRNLTNLANFDASTNFLEGDLS---EVRFLTNLVTLQLFKNQFSGEVPA-ELGKFK 306 (471)
Q Consensus 232 ~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~~-~l~~~~ 306 (471)
.++.+|+.+.+.++.+..... .....+++++.||++.|-+..-.+ ....+++|+.|+++.|.+..-... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 456777777777776652211 244566667777777666554322 334456666666666655421110 011234
Q ss_pred CCCEEEcccCcCcc-cCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccc-cchhhhcCCCCcEEE
Q 012103 307 KLVNLSLYTNKLTG-ALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGE-IPATYANCLTLQRFR 384 (471)
Q Consensus 307 ~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~ 384 (471)
+|+.|.++.|.++- .+...+..+|+|+.|++..|.....-......+..|+.|+|++|++-.. .....+.++.|..|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 55555555555541 1222234445555555555531111111112233445555555444311 112233444444444
Q ss_pred ccCCcCc
Q 012103 385 VSNNSLK 391 (471)
Q Consensus 385 L~~n~~~ 391 (471)
++.+.+.
T Consensus 278 ls~tgi~ 284 (505)
T KOG3207|consen 278 LSSTGIA 284 (505)
T ss_pred ccccCcc
Confidence 4444444
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.3e-12 Score=111.18 Aligned_cols=128 Identities=20% Similarity=0.235 Sum_probs=55.3
Q ss_pred CCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEc
Q 012103 306 KKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRV 385 (471)
Q Consensus 306 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L 385 (471)
..|+++|+++|.++ .+.++..-.|.++.|+++.|.+. .+. .+..+++|+.|++++|.++ .+..+-..+.++++|.|
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 44455555555544 33334444444555555555443 221 2344444555555555444 23333334444444555
Q ss_pred cCCcCcccccccccCCCCCCEeecccCccccc-cchhhhccCCCCeeeCCCCcCc
Q 012103 386 SNNSLKGTVPAGIWGLPEVNIIDIALNQIEGP-ITKDIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 386 ~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~ 439 (471)
++|.+. .+ .++..+-+|..||+++|+|... .-..++++|.|+.+.+.+|.+.
T Consensus 360 a~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 360 AQNKIE-TL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhHh-hh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 544443 11 1233444444444444444321 1123344444444444444444
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.1e-12 Score=112.36 Aligned_cols=245 Identities=19% Similarity=0.266 Sum_probs=138.8
Q ss_pred ccCCCCCcEEEcccCcCCCc----CCccccCCCCCCeEeeccc---cccccCCc-------cccCCCCCCEEeCCCCcCc
Q 012103 207 IGNLTELINLELSDNNISGE----IPSEIGNLVKLWRLELYNN---QLSGKLPV-------GLRNLTNLANFDASTNFLE 272 (471)
Q Consensus 207 l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~n---~l~~~~~~-------~l~~l~~L~~L~l~~n~~~ 272 (471)
+..+..++.+++++|.+... +...+...++|+..+++.- +....+|+ .+..+++|+++++|+|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 44566777788887776532 2333445566666666531 11112222 2334456666666666554
Q ss_pred cccc-----cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccc---
Q 012103 273 GDLS-----EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTG--- 344 (471)
Q Consensus 273 ~~~~-----~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--- 344 (471)
.... .++.+.+|++|.+.+|.+...--..++. .|..+. ...-.+.-+.|+.+....|++..
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeeccccccccH
Confidence 3221 2344555555555555554211111110 011111 01112334567777777777642
Q ss_pred -cCchhhcCCCCCceeeccCCcccc----ccchhhhcCCCCcEEEccCCcCccc----ccccccCCCCCCEeecccCccc
Q 012103 345 -PIPPDMCKRGTMRDLLMLQNKFTG----EIPATYANCLTLQRFRVSNNSLKGT----VPAGIWGLPEVNIIDIALNQIE 415 (471)
Q Consensus 345 -~~p~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~ls~n~~~ 415 (471)
.+...+...+.|+.+.+..|.|.. .+...+..|++|+.|||.+|-++.. +...+..++.|+.+++++|.+.
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 222345566777888887776653 2334577788888888888887732 3445666778888888888777
Q ss_pred cccchhhh-----ccCCCCeeeCCCCcCcc----cchhhhhcCCCCCEEeccCCcC
Q 012103 416 GPITKDIE-----NAKALNLLFAEYNRLSG----ELPEEISKATSLVVIKLNNNQL 462 (471)
Q Consensus 416 ~~~~~~~~-----~l~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~l~~n~~ 462 (471)
......+. ..++|+.+.+.+|.|+. .+..++...+.|..|+|++|.+
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 65443332 35788888888888763 3334455567888888888887
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=7e-12 Score=112.78 Aligned_cols=135 Identities=21% Similarity=0.261 Sum_probs=74.7
Q ss_pred cCCCCCCEEeCCCCcCccccc-----cCCCCCCCCEEEccCCcCccc----cchhccCCCCCCEEEcccCcCccc----C
Q 012103 256 RNLTNLANFDASTNFLEGDLS-----EVRFLTNLVTLQLFKNQFSGE----VPAELGKFKKLVNLSLYTNKLTGA----L 322 (471)
Q Consensus 256 ~~l~~L~~L~l~~n~~~~~~~-----~~~~~~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~L~~n~l~~~----~ 322 (471)
..-+.|+.+...+|++..... .+...+.|+.+.++.|.+... +...+..+++|+.|||.+|.++.. +
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 345567777777776654322 445556777777777766532 223456677777777777776532 2
Q ss_pred chhhcCCCCCCEEeccCCcccccCchhh-----cCCCCCceeeccCCccccc----cchhhhcCCCCcEEEccCCcC
Q 012103 323 PQELGSWAEFDFIDVSENLLTGPIPPDM-----CKRGTMRDLLMLQNKFTGE----IPATYANCLTLQRFRVSNNSL 390 (471)
Q Consensus 323 ~~~~~~~~~L~~L~L~~n~l~~~~p~~~-----~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~n~~ 390 (471)
...+..+++|+.|++++|.+...-...+ ...+.|+.+.+.+|.++.. +..+....+.|..|+|++|++
T Consensus 234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2344556667777777776653322221 2245566666666655532 222333445555555555555
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-11 Score=108.50 Aligned_cols=133 Identities=22% Similarity=0.284 Sum_probs=99.7
Q ss_pred CCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCce
Q 012103 279 RFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRD 358 (471)
Q Consensus 279 ~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~ 358 (471)
..+..|+++++++|.++ .+.++..-.|.++.|++++|.+.. +. .+..+++|..||+++|.++ .+..+-..+.+++.
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT 356 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence 34566788888888887 667777777888888888888872 22 3677788888888888886 55556666778888
Q ss_pred eeccCCccccccchhhhcCCCCcEEEccCCcCccc-ccccccCCCCCCEeecccCccccc
Q 012103 359 LLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGT-VPAGIWGLPEVNIIDIALNQIEGP 417 (471)
Q Consensus 359 L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~~~~~~~~~L~~L~ls~n~~~~~ 417 (471)
|.+++|.+.. ...+..+.+|..||+++|+|... --..++++|.|+.+.+.+|++.+.
T Consensus 357 L~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 357 LKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred eehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 8888887762 24567778888889999888732 124578888899999999988764
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-10 Score=98.05 Aligned_cols=105 Identities=26% Similarity=0.258 Sum_probs=22.2
Q ss_pred CCcEEeCCCCCCCcccccccc-CCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEc
Q 012103 91 ALHKLSLGFNSLYGEISKDLN-NCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSV 169 (471)
Q Consensus 91 ~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 169 (471)
.++.|+|++|.|+.. +.++ .+.+|+.|++++|.++.. ..+..+++|+.|++++|.++...+ .....+++|++|++
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~-~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISE-GLDKNLPNLQELYL 95 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CH-HHHHH-TT--EEE-
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCcccc-chHHhCCcCCEEEC
Confidence 445555555555421 1232 344555555555555432 234444444444554444443211 11123444555555
Q ss_pred cCCCCCCCCCCccccCCCCCCEEEcccccC
Q 012103 170 GDNPFDPTPFPDQVVKLNKLNWLYLTNCSI 199 (471)
Q Consensus 170 ~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l 199 (471)
++|++.....-..+..+++|++|++.+|.+
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 544443322223333444444444444433
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-10 Score=122.17 Aligned_cols=86 Identities=26% Similarity=0.307 Sum_probs=43.1
Q ss_pred ccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCc
Q 012103 86 ICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLV 165 (471)
Q Consensus 86 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 165 (471)
|..++.|++||+++|.--+.+|..++.+-+||+|+++++.+...|..+.+++.|.+|++..+.....++ .....+++|+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr 645 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLR 645 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc-chhhhccccc
Confidence 444555555555554444455555555555555555555555444455555555555555544333333 3333455555
Q ss_pred EEEccCC
Q 012103 166 SLSVGDN 172 (471)
Q Consensus 166 ~L~l~~n 172 (471)
+|.+...
T Consensus 646 ~L~l~~s 652 (889)
T KOG4658|consen 646 VLRLPRS 652 (889)
T ss_pred EEEeecc
Confidence 5555433
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.5e-10 Score=94.80 Aligned_cols=126 Identities=18% Similarity=0.234 Sum_probs=47.8
Q ss_pred cCCCCCCEEeccCCcccccCchhhc-CCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccc-cCCCCC
Q 012103 327 GSWAEFDFIDVSENLLTGPIPPDMC-KRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGI-WGLPEV 404 (471)
Q Consensus 327 ~~~~~L~~L~L~~n~l~~~~p~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~-~~~~~L 404 (471)
.+...+++|+|.+|.++ .+. .+. .+.+|+.|++++|.+.. + +.+..++.|++|++++|+++ .++..+ ..+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred ccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence 34456788888888886 343 444 46788888888888884 3 34667888888888888888 454444 357888
Q ss_pred CEeecccCccccc-cchhhhccCCCCeeeCCCCcCcccch----hhhhcCCCCCEEecc
Q 012103 405 NIIDIALNQIEGP-ITKDIENAKALNLLFAEYNRLSGELP----EEISKATSLVVIKLN 458 (471)
Q Consensus 405 ~~L~ls~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p----~~l~~l~~L~~L~l~ 458 (471)
+.|++++|+|... .-..+..+++|+.|++.+|.+... + ..+..+|+|+.||-.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 8888888888753 224566788888888888888732 2 235667888887743
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.8e-11 Score=116.68 Aligned_cols=223 Identities=25% Similarity=0.272 Sum_probs=104.8
Q ss_pred CCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEE
Q 012103 233 NLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLS 312 (471)
Q Consensus 233 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ 312 (471)
.+.+|+.+++.+|.+.+. ...+..+++|++|++++|.++. +..+..++.|+.|++++|.++.. ..+..++.|+.++
T Consensus 93 ~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~-i~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITK-LEGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLD 168 (414)
T ss_pred cccceeeeeccccchhhc-ccchhhhhcchheecccccccc-ccchhhccchhhheeccCcchhc--cCCccchhhhccc
Confidence 334444444444444321 1113344455555555554442 22233334455555555555421 1222345555555
Q ss_pred cccCcCcccCc-hhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCC--CCcEEEccCCc
Q 012103 313 LYTNKLTGALP-QELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCL--TLQRFRVSNNS 389 (471)
Q Consensus 313 L~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~L~~n~ 389 (471)
+++|.+...-+ . ...+..++.+.+++|.+. ....+.....+..+++..|.++..-+ +..++ .|+.+++.+|+
T Consensus 169 l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~--~i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 169 LSYNRIVDIENDE-LSELISLEELDLGGNSIR--EIEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNR 243 (414)
T ss_pred CCcchhhhhhhhh-hhhccchHHHhccCCchh--cccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCc
Confidence 55555553222 1 344555666666666554 11223333344444555555542211 11122 25666666666
Q ss_pred CcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcc---cchhh-hhcCCCCCEEeccCCcCccc
Q 012103 390 LKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSG---ELPEE-ISKATSLVVIKLNNNQLTGK 465 (471)
Q Consensus 390 ~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~---~~p~~-l~~l~~L~~L~l~~n~~sg~ 465 (471)
+. .++..+..+..+..+++.+|++... ..+...+.+..+....|.+.. ..... ....+.++.+.+.+|++...
T Consensus 244 i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 244 IS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred cc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccc
Confidence 66 3334555566666666666666533 223444555556666665541 11111 34456666666666666544
Q ss_pred CC
Q 012103 466 IP 467 (471)
Q Consensus 466 ip 467 (471)
.+
T Consensus 321 ~~ 322 (414)
T KOG0531|consen 321 SS 322 (414)
T ss_pred cc
Confidence 43
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=6e-10 Score=117.12 Aligned_cols=249 Identities=20% Similarity=0.258 Sum_probs=110.5
Q ss_pred cccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCC
Q 012103 157 SLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVK 236 (471)
Q Consensus 157 ~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 236 (471)
.|..++.|++||+++|.- ...+|..++.+-+||+|+++++.+. .+|..+.++..|.+|++..+.....+|.....+.+
T Consensus 566 ff~~m~~LrVLDLs~~~~-l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~ 643 (889)
T KOG4658|consen 566 FFRSLPLLRVLDLSGNSS-LSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQS 643 (889)
T ss_pred HHhhCcceEEEECCCCCc-cCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccc
Confidence 355555555555555432 3445555666666666666665555 55556666666666666555443334444444566
Q ss_pred CCeEeecccccc--ccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCC----EEEccCCcCccccchhccCCCCCCE
Q 012103 237 LWRLELYNNQLS--GKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLV----TLQLFKNQFSGEVPAELGKFKKLVN 310 (471)
Q Consensus 237 L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~----~L~l~~n~l~~~~~~~l~~~~~L~~ 310 (471)
|++|.+...... ...-..+.++.+|+.+....... .....+..++.|. .+.+.++... ..+..+..+.+|+.
T Consensus 644 Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~ 721 (889)
T KOG4658|consen 644 LRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEE 721 (889)
T ss_pred ccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcce
Confidence 666655544321 11112223334444433322221 0001111112121 2222222222 33344555666666
Q ss_pred EEcccCcCcccCchhhcC------CCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEE
Q 012103 311 LSLYTNKLTGALPQELGS------WAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFR 384 (471)
Q Consensus 311 L~L~~n~l~~~~~~~~~~------~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 384 (471)
|.+.++.+.......... ++++..+.+.++..- ..+.+....++|+.|.+..+.....+......+..++.+.
T Consensus 722 L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i 800 (889)
T KOG4658|consen 722 LSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELI 800 (889)
T ss_pred EEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEE
Confidence 666666654221111000 122222222232221 2233333456677777766655555555555555555554
Q ss_pred ccCCcCccc-ccccccCCCCCCEeecc
Q 012103 385 VSNNSLKGT-VPAGIWGLPEVNIIDIA 410 (471)
Q Consensus 385 L~~n~~~~~-~~~~~~~~~~L~~L~ls 410 (471)
+..+.+.+. .-...+.++++..+.+.
T Consensus 801 ~~f~~~~~l~~~~~l~~l~~i~~~~l~ 827 (889)
T KOG4658|consen 801 LPFNKLEGLRMLCSLGGLPQLYWLPLS 827 (889)
T ss_pred ecccccccceeeecCCCCceeEecccC
Confidence 555554433 22333344444443333
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-09 Score=75.52 Aligned_cols=61 Identities=25% Similarity=0.357 Sum_probs=38.5
Q ss_pred CCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcC
Q 012103 402 PEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQL 462 (471)
Q Consensus 402 ~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~ 462 (471)
|+|++|++++|++....+..|.++++|+.|++++|+++...|+.|..+++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3456666666666655555666666666666666666655556666666666666666654
|
... |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.8e-09 Score=73.20 Aligned_cols=60 Identities=25% Similarity=0.358 Sum_probs=32.8
Q ss_pred CCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcC
Q 012103 379 TLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRL 438 (471)
Q Consensus 379 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l 438 (471)
+|++|++++|+++...+..|.++++|++|++++|++....|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455555555555533334555555555555555555555555555555555555555543
|
... |
| >PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.9e-09 Score=65.27 Aligned_cols=40 Identities=35% Similarity=0.772 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCC--CCCceeeceEeC
Q 012103 22 SDELQILLNLKTSLKDSKSSIFSSWVSN--NHFCNFTGITCN 61 (471)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~--~~~c~~~gv~c~ 61 (471)
++|++||++||.++..++...+.+|..+ .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 6899999999999986445889999977 799999999995
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A. |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.4e-10 Score=108.50 Aligned_cols=196 Identities=27% Similarity=0.269 Sum_probs=97.1
Q ss_pred CCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCe
Q 012103 160 NMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWR 239 (471)
Q Consensus 160 ~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 239 (471)
.+..++.+.+..|.+.. +-..+..+.+|+.+++.+|.+.. +...+..+++|++|++++|.|+... .+..++.|+.
T Consensus 70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhh
Confidence 34556666666666622 22345666777777777777763 3222556667777777777766332 2344555666
Q ss_pred EeeccccccccCCccccCCCCCCEEeCCCCcCcccccc-CCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcC
Q 012103 240 LELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSE-VRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKL 318 (471)
Q Consensus 240 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l 318 (471)
|++.+|.+... ..+..++.|+.+++++|.+...-.. ...+.+++.+++.+|.+... ..+.....+..+++..|.+
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence 66666666521 2234455666666666655432221 24455555555555555421 1122222333334444444
Q ss_pred cccCchhhcCCC--CCCEEeccCCcccccCchhhcCCCCCceeeccCCccc
Q 012103 319 TGALPQELGSWA--EFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFT 367 (471)
Q Consensus 319 ~~~~~~~~~~~~--~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~ 367 (471)
+..-+ +.... .|+.+++++|.+. .++..+..+..+..+++.+|++.
T Consensus 221 ~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 221 SKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred eeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence 42111 11111 1455555555554 22233344444555555555444
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.7e-08 Score=89.33 Aligned_cols=209 Identities=18% Similarity=0.142 Sum_probs=116.3
Q ss_pred ccCCCCCcEEeCCCCCCCc--cccccccCCCCCCEEeCCCCcCCccCC---CCCCCCCCCEEEccCCCCcccCCcccc-c
Q 012103 86 ICQLQALHKLSLGFNSLYG--EISKDLNNCVKLQYLDLGNNVFSGSFP---EISSLNELQHLYLNLSGFSGVFPWMSL-G 159 (471)
Q Consensus 86 ~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~~-~ 159 (471)
++..+.++.+.+.++.+.. .....-..++.++.+||.+|.++.-.. -+.++|.|++|+++.|++...+. .+ .
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~--~lp~ 118 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK--SLPL 118 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc--cCcc
Confidence 4444555566666665532 222222355778888888888764322 45678888888888888876543 22 4
Q ss_pred CCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCccc--CCccccCC-CCCcEEEcccCcCCC--cCCccccCC
Q 012103 160 NMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQ--IPVEIGNL-TELINLELSDNNISG--EIPSEIGNL 234 (471)
Q Consensus 160 ~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~l~~l-~~L~~L~L~~n~l~~--~~p~~~~~l 234 (471)
...+|++|.|.+..+.-......+..+|.++.|.++.|.+... -....... +.++++....|.... .+...-.-+
T Consensus 119 p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~F 198 (418)
T KOG2982|consen 119 PLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIF 198 (418)
T ss_pred cccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhc
Confidence 5668888888887774333445566777888887777743210 00111111 234444443332210 000111224
Q ss_pred CCCCeEeecccccccc-CCccccCCCCCCEEeCCCCcCccc--cccCCCCCCCCEEEccCCcCcc
Q 012103 235 VKLWRLELYNNQLSGK-LPVGLRNLTNLANFDASTNFLEGD--LSEVRFLTNLVTLQLFKNQFSG 296 (471)
Q Consensus 235 ~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~--~~~~~~~~~L~~L~l~~n~l~~ 296 (471)
+++..+.+..|.+... .......++.+..|+++.+++..- +..+..+++|+.|.++++.+..
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 5566666666655422 223344455666777777776542 2266677777777777777663
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-09 Score=96.75 Aligned_cols=205 Identities=18% Similarity=0.165 Sum_probs=126.5
Q ss_pred CCEEEEEcCCCCCccccCcccccCC-CCCcEEeCCCCCCCcc-ccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCE
Q 012103 65 SFVQEIELSNRNLKGTLPFDSICQL-QALHKLSLGFNSLYGE-ISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQH 141 (471)
Q Consensus 65 ~~v~~L~L~~~~l~g~l~~~~~~~l-~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~ 141 (471)
..|..+.+....+...--++.+.-+ ..|++||+++..++.. +-.-++.|.+|+.|++.++++...+. .+.+-.+|+.
T Consensus 159 rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~ 238 (419)
T KOG2120|consen 159 RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVR 238 (419)
T ss_pred CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccccee
Confidence 3466666654333321011112222 2488888888777642 23345678888888888888887666 7788888888
Q ss_pred EEccCCC-CcccCCcccccCCCCCcEEEccCCCCCCCCCCccccC-CCCCCEEEcccccCc---ccCCccccCCCCCcEE
Q 012103 142 LYLNLSG-FSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVK-LNKLNWLYLTNCSID---GQIPVEIGNLTELINL 216 (471)
Q Consensus 142 L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~-l~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L 216 (471)
|+++.+. ++...-...+.+++.|..|+++.|......+...+.. -++|..|+++++.-. ..+..-...+++|.+|
T Consensus 239 lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 239 LNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred eccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 8888764 3322111345778888888888887643322222222 256788888876422 1222334678888889
Q ss_pred EcccCcC-CCcCCccccCCCCCCeEeeccccccccCCcc---ccCCCCCCEEeCCCCcC
Q 012103 217 ELSDNNI-SGEIPSEIGNLVKLWRLELYNNQLSGKLPVG---LRNLTNLANFDASTNFL 271 (471)
Q Consensus 217 ~L~~n~l-~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~---l~~l~~L~~L~l~~n~~ 271 (471)
||++|.. +......+.+++.|++|.++.|.. ..|.. +...+.|.+|++-++--
T Consensus 319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred ccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccccC
Confidence 8888653 323334566788888888887754 34443 46678888888876543
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.2e-08 Score=86.89 Aligned_cols=222 Identities=18% Similarity=0.124 Sum_probs=124.3
Q ss_pred CCcEEEccCCCCCCCCCCcccc-CCCCCCEEEcccccCcc--cCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCe
Q 012103 163 NLVSLSVGDNPFDPTPFPDQVV-KLNKLNWLYLTNCSIDG--QIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWR 239 (471)
Q Consensus 163 ~L~~L~l~~n~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 239 (471)
.++.+.+.++.+........++ .+..++.+++..|.++. .+...+.++|+|+.|+++.|.+...+-..-....+|++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 3444445555553333233332 34567777777777662 34444567778888888877776433221134567788
Q ss_pred Eeecccccccc-CCccccCCCCCCEEeCCCCcCcc---ccc-cCCCCCCCCEEEccCCcCcc--ccchhccCCCCCCEEE
Q 012103 240 LELYNNQLSGK-LPVGLRNLTNLANFDASTNFLEG---DLS-EVRFLTNLVTLQLFKNQFSG--EVPAELGKFKKLVNLS 312 (471)
Q Consensus 240 L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~---~~~-~~~~~~~L~~L~l~~n~l~~--~~~~~l~~~~~L~~L~ 312 (471)
|.+.+..+... ....+..+|.+++++++.|.+.- +-. .-...+.++++++..|...- .....-..+|++..+.
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 88877766532 23345677777888888774321 111 11122455566655554321 1111122356777778
Q ss_pred cccCcCcccC-chhhcCCCCCCEEeccCCcccccC-chhhcCCCCCceeeccCCccccccch------hhhcCCCCcEEE
Q 012103 313 LYTNKLTGAL-PQELGSWAEFDFIDVSENLLTGPI-PPDMCKRGTMRDLLMLQNKFTGEIPA------TYANCLTLQRFR 384 (471)
Q Consensus 313 L~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~-p~~~~~~~~L~~L~l~~n~~~~~~~~------~~~~~~~L~~L~ 384 (471)
+..|.+...- ......++.+..|+|+.+++..-. -..+.+++.|..|.++++.+...+.. .++.+++++.|+
T Consensus 206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 8888775422 223455666778888888775211 12456677888888888877643322 235566666664
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.9e-09 Score=93.31 Aligned_cols=84 Identities=19% Similarity=0.107 Sum_probs=50.0
Q ss_pred CCcEEEcccCcCCCc-CCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc---cCCCCCCCCEE
Q 012103 212 ELINLELSDNNISGE-IPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS---EVRFLTNLVTL 287 (471)
Q Consensus 212 ~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~~~L~~L 287 (471)
.|+.+||++..++.. +-..+..|.+|+.|.+.++++...+...+....+|+.++++.+.--.... .+++++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 477777777666531 22234567777777777777776666666777777777776653211111 34455555555
Q ss_pred EccCCcCc
Q 012103 288 QLFKNQFS 295 (471)
Q Consensus 288 ~l~~n~l~ 295 (471)
+++.|.++
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 55555544
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.7e-08 Score=86.12 Aligned_cols=160 Identities=23% Similarity=0.170 Sum_probs=85.5
Q ss_pred cCCCCCcEEEcccCcCCCcCCcc----ccCCCCCCeEeecccccccc----CC---------ccccCCCCCCEEeCCCCc
Q 012103 208 GNLTELINLELSDNNISGEIPSE----IGNLVKLWRLELYNNQLSGK----LP---------VGLRNLTNLANFDASTNF 270 (471)
Q Consensus 208 ~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~l~~n~l~~~----~~---------~~l~~l~~L~~L~l~~n~ 270 (471)
-.|++|+..+|+.|.+....|.. ++.-..|++|.+++|.+... +. ....+-|.|+.+....|+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 34555555555555554433332 22334555555555544211 11 112345677777777777
Q ss_pred Cccccc-----cCCCCCCCCEEEccCCcCccccc-----hhccCCCCCCEEEcccCcCccc----CchhhcCCCCCCEEe
Q 012103 271 LEGDLS-----EVRFLTNLVTLQLFKNQFSGEVP-----AELGKFKKLVNLSLYTNKLTGA----LPQELGSWAEFDFID 336 (471)
Q Consensus 271 ~~~~~~-----~~~~~~~L~~L~l~~n~l~~~~~-----~~l~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~ 336 (471)
+..... .+.....|+.+.+..|.|..... ..+..+.+|+.||+++|.++-. +...+..++.|+.|.
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 653222 23334577888888887763321 1234567788888888877632 223445666777777
Q ss_pred ccCCcccccCchhh------cCCCCCceeeccCCccc
Q 012103 337 VSENLLTGPIPPDM------CKRGTMRDLLMLQNKFT 367 (471)
Q Consensus 337 L~~n~l~~~~p~~~------~~~~~L~~L~l~~n~~~ 367 (471)
+.+|-++..-..++ ...++|..|....|...
T Consensus 249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred ccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 77776653322221 12345566666555443
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.7e-08 Score=99.43 Aligned_cols=176 Identities=25% Similarity=0.308 Sum_probs=118.8
Q ss_pred cCCCCCCCCEEEccCCcCccccchhccCC-CCCCEEEcccCcCc----------ccCchhhcCCCCCCEEeccCCccccc
Q 012103 277 EVRFLTNLVTLQLFKNQFSGEVPAELGKF-KKLVNLSLYTNKLT----------GALPQELGSWAEFDFIDVSENLLTGP 345 (471)
Q Consensus 277 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~-~~L~~L~L~~n~l~----------~~~~~~~~~~~~L~~L~L~~n~l~~~ 345 (471)
.+..+.+|+.|.+.++.+... ..+..+ ..|++|-. .|.++ |.+..+ ..+..|...+.+.|.++ .
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns-~~Wn~L~~a~fsyN~L~-~ 178 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNS-PVWNKLATASFSYNRLV-L 178 (1096)
T ss_pred eeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccc-hhhhhHhhhhcchhhHH-h
Confidence 556678899999999988731 111111 13333322 12221 111111 12346778888888887 5
Q ss_pred CchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccc-cccCCCCCCEeecccCccccccchhhhc
Q 012103 346 IPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPA-GIWGLPEVNIIDIALNQIEGPITKDIEN 424 (471)
Q Consensus 346 ~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~-~~~~~~~L~~L~ls~n~~~~~~~~~~~~ 424 (471)
...++.-++.++.|+|++|+++... .+..|+.|+.|||+.|.+. .+|. ....+. |+.|.+++|.++.. ..+.+
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~ 252 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIEN 252 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHh
Confidence 6667777888899999999888443 6778889999999999988 5554 233444 88999999988743 46788
Q ss_pred cCCCCeeeCCCCcCccc-chhhhhcCCCCCEEeccCCcCc
Q 012103 425 AKALNLLFAEYNRLSGE-LPEEISKATSLVVIKLNNNQLT 463 (471)
Q Consensus 425 l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~l~~n~~s 463 (471)
+.+|+-||+++|-|.+- --+.++.+..|++|.|.||++.
T Consensus 253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 88999999999977641 1233566677888999999876
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.5e-09 Score=101.50 Aligned_cols=178 Identities=25% Similarity=0.295 Sum_probs=101.6
Q ss_pred CccccCCCCCCeEeeccccccccCCccccCC-CCCCEEeCCCCcCc----------cccccCCCCCCCCEEEccCCcCcc
Q 012103 228 PSEIGNLVKLWRLELYNNQLSGKLPVGLRNL-TNLANFDASTNFLE----------GDLSEVRFLTNLVTLQLFKNQFSG 296 (471)
Q Consensus 228 p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~~~----------~~~~~~~~~~~L~~L~l~~n~l~~ 296 (471)
|-.+..+.+|++|.+.++.+.. ...+..+ ..|++|-. .|.+. |++..--....|...++++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV- 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence 6677888999999999988863 1111111 12233222 22111 11111111245667777777776
Q ss_pred ccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchh-hcCCCCCceeeccCCccccccchhhh
Q 012103 297 EVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPD-MCKRGTMRDLLMLQNKFTGEIPATYA 375 (471)
Q Consensus 297 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~-~~~~~~L~~L~l~~n~~~~~~~~~~~ 375 (471)
....++.-++.++.|+|+.|+++.. ..+..++.|++|||++|.++ .+|.. ...+ .|+.|.+++|.++.. ..+.
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie 251 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTL--RGIE 251 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhh--hhHH
Confidence 5556666677777777777777632 25666777777777777776 55532 2223 377777777766521 2345
Q ss_pred cCCCCcEEEccCCcCccccc-ccccCCCCCCEeecccCccc
Q 012103 376 NCLTLQRFRVSNNSLKGTVP-AGIWGLPEVNIIDIALNQIE 415 (471)
Q Consensus 376 ~~~~L~~L~L~~n~~~~~~~-~~~~~~~~L~~L~ls~n~~~ 415 (471)
++.+|+.||+++|-+.+.-. ..++.+..|+.|+|.+|++-
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 66667777777766653211 12344556666666666654
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.2e-07 Score=82.99 Aligned_cols=245 Identities=19% Similarity=0.221 Sum_probs=120.9
Q ss_pred ccCCCCCcEEEcccCcCCCcCCcc----ccCCCCCCeEeeccccc---cccCC-------ccccCCCCCCEEeCCCCcCc
Q 012103 207 IGNLTELINLELSDNNISGEIPSE----IGNLVKLWRLELYNNQL---SGKLP-------VGLRNLTNLANFDASTNFLE 272 (471)
Q Consensus 207 l~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~l~~n~l---~~~~~-------~~l~~l~~L~~L~l~~n~~~ 272 (471)
+.-+..+..++|++|.+...-..+ +++-.+|+...++.--. ...++ ..+..+++|+.++++.|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 344667888888888776543333 33445666666554211 11111 23455667777777776665
Q ss_pred cccc-----cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCc
Q 012103 273 GDLS-----EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIP 347 (471)
Q Consensus 273 ~~~~-----~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 347 (471)
...+ .++..+.|++|.+++|.+...--..++. .|.+ +.+| .-...-|.|+.+.+..|++. ..|
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~--la~n-------KKaa~kp~Le~vicgrNRle-ngs 173 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFH--LAYN-------KKAADKPKLEVVICGRNRLE-NGS 173 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHH--HHHH-------hhhccCCCceEEEeccchhc-cCc
Confidence 4333 3455566666666666554211111110 0000 0000 01122345556666665553 111
Q ss_pred h-----hhcCCCCCceeeccCCccccc-----cchhhhcCCCCcEEEccCCcCccc----ccccccCCCCCCEeecccCc
Q 012103 348 P-----DMCKRGTMRDLLMLQNKFTGE-----IPATYANCLTLQRFRVSNNSLKGT----VPAGIWGLPEVNIIDIALNQ 413 (471)
Q Consensus 348 ~-----~~~~~~~L~~L~l~~n~~~~~-----~~~~~~~~~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~ls~n~ 413 (471)
. .+..-.+|+.+.+..|.|... +...+..+.+|+.||+.+|.++-. +...+...+.|+.|.+.+|-
T Consensus 174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 1 122234566666666655432 122344566777777777766521 22233444556777777776
Q ss_pred cccccchhh----h--ccCCCCeeeCCCCcCcccchhhh-------hcCCCCCEEeccCCcCc
Q 012103 414 IEGPITKDI----E--NAKALNLLFAEYNRLSGELPEEI-------SKATSLVVIKLNNNQLT 463 (471)
Q Consensus 414 ~~~~~~~~~----~--~l~~L~~L~l~~n~l~~~~p~~l-------~~l~~L~~L~l~~n~~s 463 (471)
++....+.+ . ..++|..|...+|.+.+.+...+ ..+|-|..+.+.||+|+
T Consensus 254 ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 254 LSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 654433222 1 23666777777776654332221 22455666666666665
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.1e-07 Score=74.45 Aligned_cols=83 Identities=23% Similarity=0.303 Sum_probs=41.6
Q ss_pred CCCCEEeccCCcccccCchhhc-CCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEee
Q 012103 330 AEFDFIDVSENLLTGPIPPDMC-KRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIID 408 (471)
Q Consensus 330 ~~L~~L~L~~n~l~~~~p~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ 408 (471)
..|..++|++|.+. .+|+.+. .++..+.+++++|.++ .+|..++.++.|+.++++.|.+. ..|..+..+.++-.|+
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 34444555555554 3343332 2334555555555555 34444555555555555555555 4444444455555555
Q ss_pred cccCccc
Q 012103 409 IALNQIE 415 (471)
Q Consensus 409 ls~n~~~ 415 (471)
..+|.+.
T Consensus 130 s~~na~~ 136 (177)
T KOG4579|consen 130 SPENARA 136 (177)
T ss_pred CCCCccc
Confidence 5555554
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.3e-06 Score=55.38 Aligned_cols=36 Identities=31% Similarity=0.499 Sum_probs=16.8
Q ss_pred CCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCc
Q 012103 427 ALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463 (471)
Q Consensus 427 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~s 463 (471)
+|++|++++|+|+ .+|..+.++++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444555555554 34444555555555555555554
|
... |
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.6e-07 Score=72.46 Aligned_cols=132 Identities=15% Similarity=0.174 Sum_probs=82.8
Q ss_pred CCEEEccCCcCccccc---hhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceee
Q 012103 284 LVTLQLFKNQFSGEVP---AELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLL 360 (471)
Q Consensus 284 L~~L~l~~n~l~~~~~---~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~ 360 (471)
+..++++.|++- .++ ..+.....|+.+++++|.+...-+.....++.++.+++++|.+. .+|+.+..++.|+.++
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 455667777654 222 23344456667778888777433333345567777888888776 7777777777888888
Q ss_pred ccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccc
Q 012103 361 MLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPIT 419 (471)
Q Consensus 361 l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~ 419 (471)
++.|.+. ..|..+..+.++..|+..+|.+. .+|..+...+..-..++.++.+.+.-+
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 8888777 55566666777777777777776 555444333334444555555555443
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.6e-05 Score=50.35 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=13.5
Q ss_pred CCEeecccCccccccchhhhccCCCCeeeCCCCcCc
Q 012103 404 VNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 404 L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 439 (471)
|++|++++|+|+. +|..+.++++|+.|++++|+++
T Consensus 3 L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 3444444444442 2323444444444444444443
|
... |
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=8.4e-06 Score=84.12 Aligned_cols=135 Identities=23% Similarity=0.273 Sum_probs=71.0
Q ss_pred CCCcEEEccCCCCCCCCCCcccc-CCCCCCEEEcccccCcc-cCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCe
Q 012103 162 TNLVSLSVGDNPFDPTPFPDQVV-KLNKLNWLYLTNCSIDG-QIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWR 239 (471)
Q Consensus 162 ~~L~~L~l~~n~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 239 (471)
.+|++|++++...-....|..++ .+|.|+.|.+.+-.+.. .+-.-..++++|..||+++++++. + ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHH
Confidence 35555566555443344444443 35666666666554432 122233456666666666666652 2 45566666666
Q ss_pred Eeeccccccc-cCCccccCCCCCCEEeCCCCcCccccc-------cCCCCCCCCEEEccCCcCcccc
Q 012103 240 LELYNNQLSG-KLPVGLRNLTNLANFDASTNFLEGDLS-------EVRFLTNLVTLQLFKNQFSGEV 298 (471)
Q Consensus 240 L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~-------~~~~~~~L~~L~l~~n~l~~~~ 298 (471)
|.+.+=.+.. ..-..+.++++|+.||+|......... .-..+|+|+.||.+++.+...+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 6665544431 111234566677777776654433221 1223567777777766666543
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=9.7e-05 Score=70.52 Aligned_cols=135 Identities=16% Similarity=0.185 Sum_probs=77.8
Q ss_pred ccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCc
Q 012103 302 LGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQ 381 (471)
Q Consensus 302 l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 381 (471)
+..+.+++.|++++|.++ .+|. -.++|++|.++++.--..+|..+ .++|+.|.+++|.....+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 455788999999999887 5562 23469999999854333667555 35899999998843324443 577
Q ss_pred EEEccCCcCc--ccccccccCCCCCCEeecccCcccc--ccchhhhcc-CCCCeeeCCCCcCcccchhhhhcCCCCCEEe
Q 012103 382 RFRVSNNSLK--GTVPAGIWGLPEVNIIDIALNQIEG--PITKDIENA-KALNLLFAEYNRLSGELPEEISKATSLVVIK 456 (471)
Q Consensus 382 ~L~L~~n~~~--~~~~~~~~~~~~L~~L~ls~n~~~~--~~~~~~~~l-~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 456 (471)
.|++.++... +.+|. +|+.|.+.+++... .+|. .+ ++|+.|++++|... ..|+.+. .+|+.|.
T Consensus 116 ~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 116 SLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSIT 183 (426)
T ss_pred eEEeCCCCCcccccCcc------hHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCccccc--ccCcEEE
Confidence 7777765543 13343 34455543322110 0110 11 45666666665544 2333332 3556666
Q ss_pred ccCC
Q 012103 457 LNNN 460 (471)
Q Consensus 457 l~~n 460 (471)
++.|
T Consensus 184 ls~n 187 (426)
T PRK15386 184 LHIE 187 (426)
T ss_pred eccc
Confidence 6554
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.74 E-value=6.7e-05 Score=63.29 Aligned_cols=105 Identities=22% Similarity=0.203 Sum_probs=52.6
Q ss_pred CCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCC-CCCCCCEEEccCCCCcccCCcccccCCCCCcEEEc
Q 012103 91 ALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEIS-SLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSV 169 (471)
Q Consensus 91 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 169 (471)
+...+|+++|.+.. ...|..++.|..|.+.+|+|+..-|.+. .+++|..|.+.+|.+........+..++.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 44555666665532 1235555666666666666665555333 34455566665555543322234455556666665
Q ss_pred cCCCCCCCCCC--ccccCCCCCCEEEcccc
Q 012103 170 GDNPFDPTPFP--DQVVKLNKLNWLYLTNC 197 (471)
Q Consensus 170 ~~n~~~~~~~~--~~l~~l~~L~~L~l~~n 197 (471)
-+|......-. ..+..+|+|+.||++.-
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 55554221111 12344555555555543
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.72 E-value=9.3e-05 Score=62.46 Aligned_cols=85 Identities=21% Similarity=0.271 Sum_probs=54.8
Q ss_pred CCCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEE
Q 012103 114 VKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLY 193 (471)
Q Consensus 114 ~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 193 (471)
.....+||++|.+. ..+.+.+++.|..|.+++|.++...| ..-.-+++|+.|.+.+|++.....-..+..+|+|++|.
T Consensus 42 d~~d~iDLtdNdl~-~l~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KLDNLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchh-hcccCCCccccceEEecCCcceeecc-chhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 35667888888775 34456677777788888887777666 44445566777777777764433344455566666666
Q ss_pred cccccCc
Q 012103 194 LTNCSID 200 (471)
Q Consensus 194 l~~n~l~ 200 (471)
+-+|...
T Consensus 120 ll~Npv~ 126 (233)
T KOG1644|consen 120 LLGNPVE 126 (233)
T ss_pred ecCCchh
Confidence 6555554
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=1.2e-05 Score=83.09 Aligned_cols=149 Identities=20% Similarity=0.228 Sum_probs=89.5
Q ss_pred CCCCEEeCCCCcCC-ccCC-CC-CCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCC
Q 012103 114 VKLQYLDLGNNVFS-GSFP-EI-SSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLN 190 (471)
Q Consensus 114 ~~L~~L~l~~n~l~-~~~~-~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~ 190 (471)
.+|++||+++.... ..++ .+ ..+|+|+.|.+.+-.+....-.....++++|..||++++.++.. ..++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence 57888888775432 2222 33 35788888888776654322114456778888888888877332 5677788888
Q ss_pred EEEcccccCcc-cCCccccCCCCCcEEEcccCcCCCcC--C----ccccCCCCCCeEeeccccccccCCcc-ccCCCCCC
Q 012103 191 WLYLTNCSIDG-QIPVEIGNLTELINLELSDNNISGEI--P----SEIGNLVKLWRLELYNNQLSGKLPVG-LRNLTNLA 262 (471)
Q Consensus 191 ~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--p----~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~ 262 (471)
+|.+.+-.+.. ..-..+.++++|+.||+|........ . +.-..++.|+.||.+++.+.+..-+. +...++|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 88777766552 22235667888888888876543211 1 11123678888888887776543322 23344444
Q ss_pred EEe
Q 012103 263 NFD 265 (471)
Q Consensus 263 ~L~ 265 (471)
.+.
T Consensus 279 ~i~ 281 (699)
T KOG3665|consen 279 QIA 281 (699)
T ss_pred hhh
Confidence 443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00016 Score=69.06 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=16.2
Q ss_pred CCCCCCeEeeccccccccCCccccCCCCCCEEeCCC
Q 012103 233 NLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDAST 268 (471)
Q Consensus 233 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 268 (471)
.+.++++|++++|.++ .+|. -..+|++|.+++
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsn 81 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIEN 81 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccC
Confidence 3456666666666554 3331 122455555554
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=4.3e-06 Score=77.82 Aligned_cols=83 Identities=20% Similarity=0.160 Sum_probs=40.8
Q ss_pred CCcEEeCCCCCCCcc--ccccccCCCCCCEEeCCCCcCCccCC--CC-CCCCCCCEEEccCCC-CcccCCcccccCCCCC
Q 012103 91 ALHKLSLGFNSLYGE--ISKDLNNCVKLQYLDLGNNVFSGSFP--EI-SSLNELQHLYLNLSG-FSGVFPWMSLGNMTNL 164 (471)
Q Consensus 91 ~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~--~l-~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L 164 (471)
.|+.|.++++.=.+. +-.....++++++|++.++....... .+ ..+++|+++++..|. ++...-......+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 566677766554332 22234566677776666664222111 12 345666666666532 2222110122345666
Q ss_pred cEEEccCCC
Q 012103 165 VSLSVGDNP 173 (471)
Q Consensus 165 ~~L~l~~n~ 173 (471)
++++++.+.
T Consensus 219 ~~lNlSwc~ 227 (483)
T KOG4341|consen 219 KYLNLSWCP 227 (483)
T ss_pred HHhhhccCc
Confidence 666666654
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0012 Score=53.36 Aligned_cols=97 Identities=18% Similarity=0.218 Sum_probs=29.8
Q ss_pred cCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCe
Q 012103 351 CKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNL 430 (471)
Q Consensus 351 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~ 430 (471)
..+++++.+.+..+ +...-...|.++++++.+.+.+ .+...-...|..+++|+.+++..+ +.......+.++ .++.
T Consensus 32 ~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~ 107 (129)
T PF13306_consen 32 SNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKE 107 (129)
T ss_dssp TT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--E
T ss_pred cccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceE
Confidence 33334444444432 3322233344444455555433 222122233444455555555433 332223334444 5555
Q ss_pred eeCCCCcCcccchhhhhcCCCC
Q 012103 431 LFAEYNRLSGELPEEISKATSL 452 (471)
Q Consensus 431 L~l~~n~l~~~~p~~l~~l~~L 452 (471)
+.+.. .+...-...|.++++|
T Consensus 108 i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 108 INIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EE-TT-B-SS----GGG-----
T ss_pred EEECC-CccEECCccccccccC
Confidence 55443 2222333344444443
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0023 Score=51.61 Aligned_cols=13 Identities=8% Similarity=0.217 Sum_probs=4.4
Q ss_pred ccCCCCCCEEEcc
Q 012103 302 LGKFKKLVNLSLY 314 (471)
Q Consensus 302 l~~~~~L~~L~L~ 314 (471)
+..+++|+.+.+.
T Consensus 31 F~~~~~l~~i~~~ 43 (129)
T PF13306_consen 31 FSNCTSLKSINFP 43 (129)
T ss_dssp TTT-TT-SEEEES
T ss_pred ccccccccccccc
Confidence 3333344444443
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=1.3e-05 Score=74.69 Aligned_cols=85 Identities=15% Similarity=0.170 Sum_probs=41.6
Q ss_pred CCCCCEEEcccCcCc--ccCchhhcCCCCCCEEeccCCcccccC-----chhhcCCCCCceeeccCCccc-cccchhhhc
Q 012103 305 FKKLVNLSLYTNKLT--GALPQELGSWAEFDFIDVSENLLTGPI-----PPDMCKRGTMRDLLMLQNKFT-GEIPATYAN 376 (471)
Q Consensus 305 ~~~L~~L~L~~n~l~--~~~~~~~~~~~~L~~L~L~~n~l~~~~-----p~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~ 376 (471)
++.|+.+++..+... +.+.+.-.+++.|+.+.++.+...... ...-+....++.+.++++... ...-+.+..
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence 455555555554432 122222344555666666655432111 122234455666666666433 233445556
Q ss_pred CCCCcEEEccCCc
Q 012103 377 CLTLQRFRVSNNS 389 (471)
Q Consensus 377 ~~~L~~L~L~~n~ 389 (471)
|++|+.+++-+++
T Consensus 425 c~~Leri~l~~~q 437 (483)
T KOG4341|consen 425 CRNLERIELIDCQ 437 (483)
T ss_pred Ccccceeeeechh
Confidence 6666666666544
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.00068 Score=59.77 Aligned_cols=12 Identities=42% Similarity=0.567 Sum_probs=5.0
Q ss_pred CCCCCEEeCCCC
Q 012103 113 CVKLQYLDLGNN 124 (471)
Q Consensus 113 l~~L~~L~l~~n 124 (471)
+++|++|+++.|
T Consensus 64 Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 64 LPKLKKLELSDN 75 (260)
T ss_pred cchhhhhcccCC
Confidence 334444444444
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.00054 Score=60.43 Aligned_cols=38 Identities=37% Similarity=0.450 Sum_probs=15.6
Q ss_pred CCCCcEEEcccC--cCCCcCCccccCCCCCCeEeeccccc
Q 012103 210 LTELINLELSDN--NISGEIPSEIGNLVKLWRLELYNNQL 247 (471)
Q Consensus 210 l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~l~~n~l 247 (471)
+++|+.|.++.| .+.+.++.....+++|+++.+++|++
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 344444444444 33333333233334444444444444
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.00028 Score=62.58 Aligned_cols=66 Identities=20% Similarity=0.201 Sum_probs=28.5
Q ss_pred cCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccc-cchhhhccCCCCeeeCCCCcCcccch
Q 012103 376 NCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGP-ITKDIENAKALNLLFAEYNRLSGELP 443 (471)
Q Consensus 376 ~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p 443 (471)
.|+.|++|.|+-|+|+ .+ ..+..|++|+.|+|..|.|.+. .-..+.++++|+.|+|..|...|.-+
T Consensus 39 kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAG 105 (388)
T ss_pred hcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccc
Confidence 3444444444444444 11 1133444444444444444431 11233455555555555555544433
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.00033 Score=70.68 Aligned_cols=186 Identities=19% Similarity=0.125 Sum_probs=90.4
Q ss_pred CCCCCEEeCCCCcCCc---cCCCCCCCCCCCEEEccCC-CCcccC---CcccccCCCCCcEEEccCCC-CCCCCCCcccc
Q 012103 113 CVKLQYLDLGNNVFSG---SFPEISSLNELQHLYLNLS-GFSGVF---PWMSLGNMTNLVSLSVGDNP-FDPTPFPDQVV 184 (471)
Q Consensus 113 l~~L~~L~l~~n~l~~---~~~~l~~l~~L~~L~l~~n-~l~~~~---~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~l~ 184 (471)
++.|+.|.+..+.-.. ..+....++.|+.|+++++ ...... .......+++|+.|+++.+. ++...+.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 5666666666653322 1234456666777776652 111111 11233445677777777776 43332222233
Q ss_pred CCCCCCEEEccccc-Cccc-CCccccCCCCCcEEEcccCcCCCc--CCccccCCCCCCeEeeccccccccCCccccCCCC
Q 012103 185 KLNKLNWLYLTNCS-IDGQ-IPVEIGNLTELINLELSDNNISGE--IPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTN 260 (471)
Q Consensus 185 ~l~~L~~L~l~~n~-l~~~-~~~~l~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 260 (471)
.+++|++|.+.+|. ++.. +......+++|++|+++++..... +.....++++++.+.+....- ++.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~~ 336 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CPS 336 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------Ccc
Confidence 46777777766666 4422 222335667788888877654311 222233455555544332211 233
Q ss_pred CCEEeCCCCcCcc--ccc--cCCCCCCCCEEEccCCcCcccc-chhccCCCCC
Q 012103 261 LANFDASTNFLEG--DLS--EVRFLTNLVTLQLFKNQFSGEV-PAELGKFKKL 308 (471)
Q Consensus 261 L~~L~l~~n~~~~--~~~--~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L 308 (471)
++.+.+....... ... ....++.++.+.+..+...... ...+..++.|
T Consensus 337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 3333333322211 111 4556677777777776633222 2344445555
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0014 Score=34.45 Aligned_cols=19 Identities=42% Similarity=0.658 Sum_probs=14.0
Q ss_pred CCCEEeccCCcCcccCCCCC
Q 012103 451 SLVVIKLNNNQLTGKIPASI 470 (471)
Q Consensus 451 ~L~~L~l~~n~~sg~ip~~~ 470 (471)
+|++|++++|+|+ .||++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp TESEEEETSSEES-EEGTTT
T ss_pred CccEEECCCCcCE-eCChhh
Confidence 3677778888777 777765
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.00092 Score=67.43 Aligned_cols=15 Identities=13% Similarity=-0.009 Sum_probs=7.4
Q ss_pred cCCCCCceeeccCCc
Q 012103 351 CKRGTMRDLLMLQNK 365 (471)
Q Consensus 351 ~~~~~L~~L~l~~n~ 365 (471)
..++.++.+.+..+.
T Consensus 359 ~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 359 RSCPKLTDLSLSYCG 373 (482)
T ss_pred hcCCCcchhhhhhhh
Confidence 344555555555444
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.00015 Score=64.31 Aligned_cols=58 Identities=21% Similarity=0.157 Sum_probs=24.5
Q ss_pred CCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCc
Q 012103 90 QALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFS 150 (471)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~ 150 (471)
.+.++|++-+|.++.. ....+++.|++|.|+-|+|+.. ..+.+|++|++|+|..|.+.
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIE 76 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccc
Confidence 3444445544444321 1123445555555555554421 22333444444444444433
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.0073 Score=31.66 Aligned_cols=11 Identities=18% Similarity=0.437 Sum_probs=4.6
Q ss_pred CEeecccCccc
Q 012103 405 NIIDIALNQIE 415 (471)
Q Consensus 405 ~~L~ls~n~~~ 415 (471)
++||+++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 34444444443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.00023 Score=70.45 Aligned_cols=181 Identities=19% Similarity=0.176 Sum_probs=109.0
Q ss_pred CCCEEeCCCCcCccccc-----cCCCCCCCCEEEccCCcCccccchhc----cCC-CCCCEEEcccCcCccc----Cchh
Q 012103 260 NLANFDASTNFLEGDLS-----EVRFLTNLVTLQLFKNQFSGEVPAEL----GKF-KKLVNLSLYTNKLTGA----LPQE 325 (471)
Q Consensus 260 ~L~~L~l~~n~~~~~~~-----~~~~~~~L~~L~l~~n~l~~~~~~~l----~~~-~~L~~L~L~~n~l~~~----~~~~ 325 (471)
.+..+.+.+|.+..... .+...+.|..|++++|.+.+.....+ ... ..+++|++..|.+++. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 36778888887764322 56677888889999998874332222 222 4567777877877643 3445
Q ss_pred hcCCCCCCEEeccCCcccc----cCchhhc----CCCCCceeeccCCcccccc----chhhhcCCC-CcEEEccCCcCcc
Q 012103 326 LGSWAEFDFIDVSENLLTG----PIPPDMC----KRGTMRDLLMLQNKFTGEI----PATYANCLT-LQRFRVSNNSLKG 392 (471)
Q Consensus 326 ~~~~~~L~~L~L~~n~l~~----~~p~~~~----~~~~L~~L~l~~n~~~~~~----~~~~~~~~~-L~~L~L~~n~~~~ 392 (471)
+.....++.++++.|.+.. .++..+. ...+++.|.+.++.++... ...+...+. +..+++..|++.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 5556778888888887631 1222222 3556777777777666321 122333344 5557777777764
Q ss_pred c----ccccccCC-CCCCEeecccCccccccc----hhhhccCCCCeeeCCCCcCcc
Q 012103 393 T----VPAGIWGL-PEVNIIDIALNQIEGPIT----KDIENAKALNLLFAEYNRLSG 440 (471)
Q Consensus 393 ~----~~~~~~~~-~~L~~L~ls~n~~~~~~~----~~~~~l~~L~~L~l~~n~l~~ 440 (471)
. ....+..+ ..++.++++.|.|++... ..+..++.++.+.+++|.+..
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 3 22334444 556777777777766433 334455677777777777654
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.00044 Score=68.49 Aligned_cols=203 Identities=22% Similarity=0.246 Sum_probs=138.9
Q ss_pred CCCeEeeccccccccC----CccccCCCCCCEEeCCCCcCccccc-----cCCCC-CCCCEEEccCCcCccc----cchh
Q 012103 236 KLWRLELYNNQLSGKL----PVGLRNLTNLANFDASTNFLEGDLS-----EVRFL-TNLVTLQLFKNQFSGE----VPAE 301 (471)
Q Consensus 236 ~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~~~~~~~-----~~~~~-~~L~~L~l~~n~l~~~----~~~~ 301 (471)
.+..+.+.+|.+.... ...+...+.|+.++++.|.+..... .+... ..+++|++..|.+++. +.+.
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 4778888888886433 3446778899999999999874321 33333 6677888888888754 3455
Q ss_pred ccCCCCCCEEEcccCcCcc----cCchhhc----CCCCCCEEeccCCcccccC----chhhcCCCC-CceeeccCCcccc
Q 012103 302 LGKFKKLVNLSLYTNKLTG----ALPQELG----SWAEFDFIDVSENLLTGPI----PPDMCKRGT-MRDLLMLQNKFTG 368 (471)
Q Consensus 302 l~~~~~L~~L~L~~n~l~~----~~~~~~~----~~~~L~~L~L~~n~l~~~~----p~~~~~~~~-L~~L~l~~n~~~~ 368 (471)
+.....++.++++.|.+.. .++..+. ...++++|++.+|.++... ...+...+. +..+++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 6667889999999998841 1233333 4678999999999886321 123344444 6779999998875
Q ss_pred c----cchhhhcC-CCCcEEEccCCcCccc----ccccccCCCCCCEeecccCccccccc----hhhhccCCCCeeeCCC
Q 012103 369 E----IPATYANC-LTLQRFRVSNNSLKGT----VPAGIWGLPEVNIIDIALNQIEGPIT----KDIENAKALNLLFAEY 435 (471)
Q Consensus 369 ~----~~~~~~~~-~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~ls~n~~~~~~~----~~~~~l~~L~~L~l~~ 435 (471)
. ....+..+ +.++.++++.|.|++. +...+..+++++.+.++.|.+..... ........+..+.+.+
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~ 327 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGG 327 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccc
Confidence 4 23344555 6789999999999854 34456778899999999999886422 2333445666666665
Q ss_pred CcC
Q 012103 436 NRL 438 (471)
Q Consensus 436 n~l 438 (471)
+..
T Consensus 328 ~~~ 330 (478)
T KOG4308|consen 328 TGK 330 (478)
T ss_pred cCc
Confidence 544
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.02 Score=27.84 Aligned_cols=16 Identities=44% Similarity=0.775 Sum_probs=7.7
Q ss_pred CCCEEeccCCcCcccCC
Q 012103 451 SLVVIKLNNNQLTGKIP 467 (471)
Q Consensus 451 ~L~~L~l~~n~~sg~ip 467 (471)
+|++|++++|+++ ++|
T Consensus 2 ~L~~L~l~~n~L~-~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLT-SLP 17 (17)
T ss_dssp T-SEEEETSS--S-SE-
T ss_pred ccCEEECCCCCCC-CCc
Confidence 5667777777765 444
|
... |
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.05 Score=29.77 Aligned_cols=19 Identities=37% Similarity=0.637 Sum_probs=12.2
Q ss_pred CCCCEEeccCCcCcccCCCC
Q 012103 450 TSLVVIKLNNNQLTGKIPAS 469 (471)
Q Consensus 450 ~~L~~L~l~~n~~sg~ip~~ 469 (471)
++|+.|+|++|+|+ .||..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45666777777666 66654
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.05 Score=29.77 Aligned_cols=19 Identities=37% Similarity=0.637 Sum_probs=12.2
Q ss_pred CCCCEEeccCCcCcccCCCC
Q 012103 450 TSLVVIKLNNNQLTGKIPAS 469 (471)
Q Consensus 450 ~~L~~L~l~~n~~sg~ip~~ 469 (471)
++|+.|+|++|+|+ .||..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45666777777666 66654
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=90.35 E-value=0.12 Score=27.56 Aligned_cols=14 Identities=21% Similarity=0.242 Sum_probs=5.0
Q ss_pred CCCeeeCCCCcCcc
Q 012103 427 ALNLLFAEYNRLSG 440 (471)
Q Consensus 427 ~L~~L~l~~n~l~~ 440 (471)
+|+.|++++|+|++
T Consensus 3 ~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 3 NLETLDLSNNQITD 16 (24)
T ss_dssp T-SEEE-TSSBEHH
T ss_pred CCCEEEccCCcCCH
Confidence 34444444444433
|
... |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.68 E-value=0.017 Score=50.27 Aligned_cols=84 Identities=18% Similarity=0.067 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEE
Q 012103 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLY 143 (471)
Q Consensus 64 ~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~ 143 (471)
..+|+.||++.+.+. .+... +.-+..+..|+++.|.+. -.|..+.....++.+++..|..+..+-+....+++++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n-~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKN-FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccc-hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 456777777776655 34433 555666666777766654 456666666666666666666665544666666666666
Q ss_pred ccCCCCc
Q 012103 144 LNLSGFS 150 (471)
Q Consensus 144 l~~n~l~ 150 (471)
+..+.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 6555443
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=85.84 E-value=0.69 Score=25.10 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=4.9
Q ss_pred CCEeecccCccc
Q 012103 404 VNIIDIALNQIE 415 (471)
Q Consensus 404 L~~L~ls~n~~~ 415 (471)
|++|++++|++.
T Consensus 4 L~~L~L~~N~l~ 15 (26)
T smart00370 4 LRELDLSNNQLS 15 (26)
T ss_pred CCEEECCCCcCC
Confidence 344444444443
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=85.84 E-value=0.69 Score=25.10 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=4.9
Q ss_pred CCEeecccCccc
Q 012103 404 VNIIDIALNQIE 415 (471)
Q Consensus 404 L~~L~ls~n~~~ 415 (471)
|++|++++|++.
T Consensus 4 L~~L~L~~N~l~ 15 (26)
T smart00369 4 LRELDLSNNQLS 15 (26)
T ss_pred CCEEECCCCcCC
Confidence 344444444443
|
|
| >smart00364 LRR_BAC Leucine-rich repeats, bacterial type | Back alignment and domain information |
|---|
Probab=85.59 E-value=0.58 Score=25.48 Aligned_cols=17 Identities=47% Similarity=0.710 Sum_probs=11.7
Q ss_pred CCCEEeccCCcCcccCCC
Q 012103 451 SLVVIKLNNNQLTGKIPA 468 (471)
Q Consensus 451 ~L~~L~l~~n~~sg~ip~ 468 (471)
+|+.|++++|+++ ++|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4667777777777 6665
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.45 E-value=0.03 Score=48.77 Aligned_cols=84 Identities=13% Similarity=0.054 Sum_probs=40.7
Q ss_pred CCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeee
Q 012103 353 RGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLF 432 (471)
Q Consensus 353 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~ 432 (471)
....+.||++.|++. ..-..|.-++.++.++++.|.+. ..|..+.....+..+++..|..+ ..|..++..+.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 344455555555444 22233333444555555555554 44544444444445555555444 3444555555555555
Q ss_pred CCCCcCc
Q 012103 433 AEYNRLS 439 (471)
Q Consensus 433 l~~n~l~ 439 (471)
+-.|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 5555443
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.30 E-value=0.18 Score=43.12 Aligned_cols=80 Identities=20% Similarity=0.185 Sum_probs=37.4
Q ss_pred CCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc--cC-CCCCCCCEEEccCC-cCccccchhccCCCCCCEE
Q 012103 236 KLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS--EV-RFLTNLVTLQLFKN-QFSGEVPAELGKFKKLVNL 311 (471)
Q Consensus 236 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--~~-~~~~~L~~L~l~~n-~l~~~~~~~l~~~~~L~~L 311 (471)
.++.++.+++.+....-+.+.+++.++.|.+.++.--++.. .+ ...++|+.|++++| +|+...-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 34445555554444433444444455555544443322111 11 12355666666644 3454444555555666665
Q ss_pred Eccc
Q 012103 312 SLYT 315 (471)
Q Consensus 312 ~L~~ 315 (471)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5544
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.95 E-value=0.51 Score=40.47 Aligned_cols=80 Identities=10% Similarity=-0.022 Sum_probs=37.0
Q ss_pred CceeeccCCccccccchhhhcCCCCcEEEccCCcCccccc-ccc-cCCCCCCEeecccC-ccccccchhhhccCCCCeee
Q 012103 356 MRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVP-AGI-WGLPEVNIIDIALN-QIEGPITKDIENAKALNLLF 432 (471)
Q Consensus 356 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~-~~~~~L~~L~ls~n-~~~~~~~~~~~~l~~L~~L~ 432 (471)
++.++-++..|..+-.+.+.+++.++.|.+.+|+--+..- ..+ .-.++|+.|++++| +|++..-..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 4444444444444444444555555555555444322110 000 12345666666654 34444444555555555555
Q ss_pred CCC
Q 012103 433 AEY 435 (471)
Q Consensus 433 l~~ 435 (471)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 471 | ||||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 2e-38 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 2e-38 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 2e-15 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 4e-15 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 1e-06 | ||
| 2omv_A | 461 | Crystal Structure Of Inla S192n Y369s/hec1 Complex | 3e-08 | ||
| 2omu_A | 462 | Crystal Structure Of Inla G194s+s Y369s/hec1 Comple | 3e-08 | ||
| 2omz_A | 466 | Crystal Structure Of Inla Y369a/hec1 Complex Length | 4e-08 | ||
| 1o6s_A | 466 | Internalin (Listeria Monocytogenes) E-Cadherin (Hum | 1e-07 | ||
| 2omy_A | 461 | Crystal Structure Of Inla S192n/hec1 Complex Length | 1e-07 | ||
| 2omx_A | 462 | Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX | 1e-07 | ||
| 2omt_A | 462 | Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt | 2e-07 | ||
| 4fmz_A | 347 | Crystal Structure Of An Internalin (Inlf) From List | 5e-06 | ||
| 2z66_A | 306 | Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A | 2e-04 |
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461 | Back alignment and structure |
|
| >pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462 | Back alignment and structure |
|
| >pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466 | Back alignment and structure |
|
| >pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466 | Back alignment and structure |
|
| >pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461 | Back alignment and structure |
|
| >pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347 | Back alignment and structure |
|
| >pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 293 bits (753), Expect = 1e-91
Identities = 130/460 (28%), Positives = 198/460 (43%), Gaps = 41/460 (8%)
Query: 21 NSDELQILLNLKTSLKDSKSSIFSSWVSNNHFCNFTGITCNSDSSFVQEIELSNRNLKGT 80
E+ L++ K L D ++ W SN + C F G+TC D V I+LS++ L
Sbjct: 10 LYREIHQLISFKDVLPDK--NLLPDWSSNKNPCTFDGVTCRDDK--VTSIDLSSKPLNVG 65
Query: 81 LPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQ 140
+S L + L+ L L N+ +GS L
Sbjct: 66 F----------------------SAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLT 103
Query: 141 HLYLNLSGFSGVFP-WMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSI 199
L L+ + SG SLG+ + L L+V N D +KLN L L L+ SI
Sbjct: 104 SLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163
Query: 200 DGQIPVEI---GNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLR 256
G V EL +L +S N ISG++ + V L L++ +N S +P L
Sbjct: 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LG 220
Query: 257 NLTNLANFDASTNFLEGDL-SEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYT 315
+ + L + D S N L GD + T L L + NQF G +P K L LSL
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAE 278
Query: 316 NKLTGALPQEL-GSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATY 374
NK TG +P L G+ +D+S N G +PP + L + N F+GE+P
Sbjct: 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338
Query: 375 -ANCLTLQRFRVSNNSLKGTVPAGIWGL-PEVNIIDIALNQIEGPITKDIENAKALNL-- 430
L+ +S N G +P + L + +D++ N GPI ++ L
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398
Query: 431 LFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470
L+ + N +G++P +S + LV + L+ N L+G IP+S+
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 281 bits (720), Expect = 8e-87
Identities = 121/432 (28%), Positives = 200/432 (46%), Gaps = 24/432 (5%)
Query: 51 HFCNFTG-----ITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGE 105
+ +G + ++ + +S + G + + + L L + N+
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTG 215
Query: 106 ISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNL 164
I L +C LQ+LD+ N SG F IS+ EL+ L ++ + F G P + +L
Sbjct: 216 IP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP---LPLKSL 271
Query: 165 VSLSVGDNPFDPTPFPDQVV-KLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNI 223
LS+ +N F PD + + L L L+ G +P G+ + L +L LS NN
Sbjct: 272 QYLSLAENKFTG-EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 224 SGEIPSE-IGNLVKLWRLELYNNQLSGKLPVGLRNLT-NLANFDASTNFLEGDLSE---V 278
SGE+P + + + L L+L N+ SG+LP L NL+ +L D S+N G +
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390
Query: 279 RFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVS 338
L L L N F+G++P L +LV+L L N L+G +P LGS ++ + +
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450
Query: 339 ENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGI 398
N+L G IP ++ T+ L++ N TGEIP+ +NC L +SNN L G +P I
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510
Query: 399 WGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLN 458
L + I+ ++ N G I ++ + ++L L N +G +P + K + +
Sbjct: 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IA 566
Query: 459 NNQLTGKIPASI 470
N + GK I
Sbjct: 567 ANFIAGKRYVYI 578
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 265 bits (679), Expect = 7e-81
Identities = 116/410 (28%), Positives = 190/410 (46%), Gaps = 13/410 (3%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKD-LNNCVKLQYLDLGNNVF 126
++LS + G +P L L+L N+ GE+ D L L+ LDL N F
Sbjct: 297 TGLDLSGNHFYGAVP-PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355
Query: 127 SGSFP-EISSL-NELQHLYLNLSGFSGVFP-WMSLGNMTNLVSLSVGDNPFDPTPFPDQV 183
SG P +++L L L L+ + FSG + L L + +N F P +
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT-GKIPPTL 414
Query: 184 VKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELY 243
++L L+L+ + G IP +G+L++L +L+L N + GEIP E+ + L L L
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474
Query: 244 NNQLSGKLPVGLRNLTNLANFDASTNFLEGDL-SEVRFLTNLVTLQLFKNQFSGEVPAEL 302
N L+G++P GL N TNL S N L G++ + L NL L+L N FSG +PAEL
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534
Query: 303 GKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLML 362
G + L+ L L TN G +P + ++ N + G + G ++
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKRYVYIKNDGMKKECHGA 590
Query: 363 QN--KFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITK 420
N +F G T +++ G + +D++ N + G I K
Sbjct: 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650
Query: 421 DIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470
+I + L +L +N +SG +P+E+ L ++ L++N+L G+IP ++
Sbjct: 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 227 bits (581), Expect = 9e-67
Identities = 97/357 (27%), Positives = 159/357 (44%), Gaps = 21/357 (5%)
Query: 52 FCNFTGI----TCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEIS 107
NF+G C + + +QE+ L N G +P ++ L L L FN L G I
Sbjct: 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP-PTLSNCSELVSLHLSFNYLSGTIP 435
Query: 108 KDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVS 166
L + KL+ L L N+ G P E+ + L+ L L+ + +G P L N TNL
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP-SGLSNCTNLNW 494
Query: 167 LSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGE 226
+S+ +N P + +L L L L+N S G IP E+G+ LI L+L+ N +G
Sbjct: 495 ISLSNNRLTGE-IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553
Query: 227 IPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGD---LSEVRFLTN 283
IP+ + ++ N ++GK V ++N + N LE ++ L+
Sbjct: 554 IPAAMFKQ----SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609
Query: 284 LVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLT 343
+ + G ++ L + N L+G +P+E+GS +++ N ++
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669
Query: 344 GPIPPDMCKRGTMRDLLML---QNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAG 397
G IP ++ G +R L +L NK G IP + L +SNN+L G +P
Sbjct: 670 GSIPDEV---GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 2e-23
Identities = 49/223 (21%), Positives = 83/223 (37%), Gaps = 30/223 (13%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEI--------------------S 107
++LSN + G +P + ++L L L N G I
Sbjct: 517 AILKLSNNSFSGNIP-AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575
Query: 108 KDLNNCVKLQYLDLGNNV--FSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNL 164
+ N + N+ F G +++ L+ + + G + N ++
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS-PTFDNNGSM 634
Query: 165 VSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNIS 224
+ L + N P ++ + L L L + I G IP E+G+L L L+LS N +
Sbjct: 635 MFLDMSYNMLS-GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 225 GEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDAS 267
G IP + L L ++L NN LSG +P F +
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSGPIPEM----GQFETFPPA 732
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 195 bits (497), Expect = 8e-59
Identities = 88/361 (24%), Positives = 135/361 (37%), Gaps = 86/361 (23%)
Query: 21 NSDELQILLNLKTSLKDSKSSIFSSWVSNNHFCN--FTGITCNSDSSF--VQEIELSNRN 76
N + Q LL +K L + + SSW+ CN + G+ C++D+ V ++LS N
Sbjct: 4 NPQDKQALLQIKKDLGNP--TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 77 LKGTLPF--------------------------DSICQLQALHKLSLGFNSLYGEISKDL 110
L P +I +L LH L + ++ G I L
Sbjct: 62 LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121
Query: 111 NNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVG 170
+ L LD N SG+ P S+ ++ NLV ++
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPP------------------------SISSLPNLVGITFD 157
Query: 171 DNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELIN-LELSDNNISGEIPS 229
N I G IP G+ ++L + +S N ++G+IP
Sbjct: 158 GN-------------------------RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192
Query: 230 EIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQL 289
NL L ++L N L G V + N + N L DL +V NL L L
Sbjct: 193 TFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDL 251
Query: 290 FKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSEN--LLTGPIP 347
N+ G +P L + K L +L++ N L G +PQ G+ FD + N L P+P
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLP 310
Query: 348 P 348
Sbjct: 311 A 311
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 181 bits (462), Expect = 1e-53
Identities = 74/280 (26%), Positives = 113/280 (40%), Gaps = 29/280 (10%)
Query: 194 LTNCSIDGQIPVEIGNLTELINLELSDNNISGE--IPSEIGNLVKLWRLELYN-NQLSGK 250
N + G + + NL+LS N+ IPS + NL L L + N L G
Sbjct: 33 CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP 92
Query: 251 LPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVN 310
+P + LT L L + SG +P L + K LV
Sbjct: 93 IPPAIAKLTQL-----------------------HYLYITHTNVSGAIPDFLSQIKTLVT 129
Query: 311 LSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLML-QNKFTGE 369
L N L+G LP + S I N ++G IP + + + +N+ TG+
Sbjct: 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189
Query: 370 IPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALN 429
IP T+AN L L +S N L+G I +A N + + K + +K LN
Sbjct: 190 IPPTFAN-LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLN 247
Query: 430 LLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPAS 469
L NR+ G LP+ +++ L + ++ N L G+IP
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 1e-22
Identities = 35/181 (19%), Positives = 68/181 (37%), Gaps = 24/181 (13%)
Query: 292 NQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMC 351
+ G + + ++ NL L L PIP +
Sbjct: 36 RTWLGVLCDTDTQTYRVNNLDLSGLNLPK----------------------PYPIPSSLA 73
Query: 352 KRGTMRDL-LMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIA 410
+ L + N G IP A L +++ ++ G +P + + + +D +
Sbjct: 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133
Query: 411 LNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLV-VIKLNNNQLTGKIPAS 469
N + G + I + L + + NR+SG +P+ + L + ++ N+LTGKIP +
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193
Query: 470 I 470
Sbjct: 194 F 194
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 8e-18
Identities = 41/151 (27%), Positives = 62/151 (41%), Gaps = 5/151 (3%)
Query: 323 PQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGE--IPATYANCLTL 380
P L SW D G + + + +L + IP++ AN L
Sbjct: 21 PTTLSSWL--PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL 78
Query: 381 QRFRVSN-NSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLS 439
+ N+L G +P I L +++ + I + G I + K L L YN LS
Sbjct: 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138
Query: 440 GELPEEISKATSLVVIKLNNNQLTGKIPASI 470
G LP IS +LV I + N+++G IP S
Sbjct: 139 GTLPPSISSLPNLVGITFDGNRISGAIPDSY 169
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 189 bits (482), Expect = 1e-53
Identities = 78/492 (15%), Positives = 159/492 (32%), Gaps = 62/492 (12%)
Query: 34 SLKDSKSSIFSSWVSNNHFCNFT---GITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQ 90
S + + ++W N + G++ NS + V + L G +P D+I QL
Sbjct: 48 SQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGASGRVP-DAIGQLT 105
Query: 91 ALHKLSLGFNSLYG----EISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNL 146
L L+LG + K ++ + + + +F + + L +
Sbjct: 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDC 165
Query: 147 --SGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQ-- 202
S S + N T V++L KL Y+ N +
Sbjct: 166 INSDPQQKSIKKSSRITLKDTQIGQLSNNI--TFVSKAVMRLTKLRQFYMGNSPFVAENI 223
Query: 203 -----------------IPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNN 245
++ NL +L ++E+ + ++P+ + L ++ + + N
Sbjct: 224 CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283
Query: 246 QL--------SGKLPVGLRNLTNLANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQFS 295
+ + + N L+ E + L L+ NQ
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343
Query: 296 GEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTG-PIPPDMCKRG 354
G++P G KL +L+L N++T G + + + + N L P D
Sbjct: 344 GKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVS 402
Query: 355 TMRDLLMLQNKFTG-------EIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNII 407
M + N+ + T + + +SNN + ++ I
Sbjct: 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI 462
Query: 408 DIALNQIEG-------PITKDIENAKALNLLFAEYNRLSGELPEEISKA--TSLVVIKLN 458
++ N + ++ +N L + +N+L+ L ++ LV I L+
Sbjct: 463 NLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLS 521
Query: 459 NNQLTGKIPASI 470
N + P
Sbjct: 522 YNSFSK-FPTQP 532
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 187 bits (477), Expect = 5e-53
Identities = 87/509 (17%), Positives = 155/509 (30%), Gaps = 74/509 (14%)
Query: 21 NSDELQILLNLKTSLKDS---------------------KSSIFSSWVSNNHFCNFT--- 56
+ + I L+ + ++W N +
Sbjct: 14 DDAIVPIKLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQP 73
Query: 57 GITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYG----EISKDLNN 112
G++ NS + V + L G +P D+I QL L L+LG + K ++
Sbjct: 74 GVSLNS-NGRVTGLSLEGFGASGRVP-DAIGQLTELEVLALGSHGEKVNERLFGPKGISA 131
Query: 113 CVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNL--SGFSGVFPWMSLGNMTNLVSLSVG 170
+ + + +F + + L + S S +
Sbjct: 132 NMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQL 191
Query: 171 DNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSE 230
N T V++L KL Y+ N + E +
Sbjct: 192 SNNI--TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLK 244
Query: 231 IGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEG---------DLSEVRFL 281
NL L +E+YN KLP L+ L + + + N L++
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVG 304
Query: 282 TNLVTLQLFKNQF-SGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSEN 340
+ + + N + V L K KKL L N+L G GS + ++++ N
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYN 363
Query: 341 LLTGPIPPDMCKRGTMRDLLMLQ---NKFTGEIPATYA--NCLTLQRFRVSNNSLKG--- 392
+T IP + C G + L NK IP + + + S N +
Sbjct: 364 QITE-IPANFC--GFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419
Query: 393 ----TVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSG-------E 441
+ + V+ I+++ NQI + L+ + N L+ +
Sbjct: 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD 479
Query: 442 LPEEISKATSLVVIKLNNNQLTGKIPASI 470
E L I L N+LT +
Sbjct: 480 ENENFKNTYLLTSIDLRFNKLTK-LSDDF 507
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 180 bits (459), Expect = 2e-50
Identities = 72/495 (14%), Positives = 166/495 (33%), Gaps = 69/495 (13%)
Query: 21 NSDELQILLNLKTSLKDSKSSIFSSWVSNNHFCNFTGITCNSDSSFVQEIELSNRNLKGT 80
+ +++ L + + S + ++ F D S + + +++ + +
Sbjct: 115 HGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKS 174
Query: 81 LPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP--------- 131
+ S ++ N++ +SK + KL+ +GN+ F
Sbjct: 175 IK-KSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS 232
Query: 132 -----------EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTP-- 178
+ +L +L + + P L + + ++V N
Sbjct: 233 EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVACNRGISGEQL 291
Query: 179 -----FPDQVVKLNKLNWLYLTNCSI-DGQIPVEIGNLTELINLELSDNNISGEIPSEIG 232
K+ +Y+ ++ + + + +L LE N + G++P G
Sbjct: 292 KDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG 350
Query: 233 NLVKLWRLELYNNQLSGKLPVGL-RNLTNLANFDASTNFLEG--DLSEVRFLTNLVTLQL 289
+ +KL L L NQ++ +P + N + N L+ ++ + + ++ + +
Sbjct: 351 SEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDF 409
Query: 290 FKNQFSG-------EVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLL 342
N+ + K + +++L N+++ + + + I++ N+L
Sbjct: 410 SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML 469
Query: 343 TGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPA-GIWGL 401
T IP + + + N L + N L L
Sbjct: 470 TE-IPKNSL----------------KDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL 512
Query: 402 PEVNIIDIALNQIEGPITKDIENAKAL------NLLFAEYNRLSGELPEEISKATSLVVI 455
P + ID++ N N+ L N A+ NR E PE I+ SL +
Sbjct: 513 PYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571
Query: 456 KLNNNQLTGKIPASI 470
++ +N + + I
Sbjct: 572 QIGSNDIRK-VNEKI 585
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 4e-42
Identities = 68/432 (15%), Positives = 132/432 (30%), Gaps = 51/432 (11%)
Query: 58 ITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQ 117
+ + T L+ L + + ++ L ++Q
Sbjct: 218 FVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276
Query: 118 YLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPT 177
+++ N L + + +G N
Sbjct: 277 LINVACNRGISGEQLKDDWQALA----------------DAPVGEKIQIIYIGYNNLKTF 320
Query: 178 PFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKL 237
P + K+ KL L ++G++P G+ +L +L L+ N I+ + G ++
Sbjct: 321 PVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQV 379
Query: 238 WRLELYNNQLSGKLP--VGLRNLTNLANFDAS--------TNFLEGDLSEVRFLTNLVTL 287
L +N+L +P ++++ ++ D S + N+ ++
Sbjct: 380 ENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438
Query: 288 QLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTG-------ALPQELGSWAEFDFIDVSEN 340
L NQ S L +++L N LT + + ID+ N
Sbjct: 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498
Query: 341 LLTGPIPPDMCKRGTMRDLLML---QNKFTGEIPATYANCLTLQRFRVSN------NSLK 391
LT + D T+ L+ + N F+ P N TL+ F + N N
Sbjct: 499 KLTK-LSDDFRA-TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTL 555
Query: 392 GTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATS 451
P GI P + + I N I K N L++ + N +
Sbjct: 556 REWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDI---KDNPNISIDLSYVCPYIE 612
Query: 452 LVVIKLNNNQLT 463
+ L ++
Sbjct: 613 AGMYMLFYDKTQ 624
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 4e-25
Identities = 43/270 (15%), Positives = 86/270 (31%), Gaps = 30/270 (11%)
Query: 47 VSNNHFCNFTGI--TCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYG 104
++ N T I + V+ + ++ LK + + + +N +
Sbjct: 360 LAYN---QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS 416
Query: 105 -------EISKDLNNCVKLQYLDLGNNVFSGSFPEI-SSLNELQHLYL---NLSGFS--- 150
+ + + ++L NN S E+ S+ + L + L L+
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS 476
Query: 151 GVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNL 210
+ N L S+ + N + L L + L+ S P + N
Sbjct: 477 LKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNS 535
Query: 211 TELI------NLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANF 264
+ L + N E P I L +L++ +N + + + N++
Sbjct: 536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVL 592
Query: 265 DASTN-FLEGDLSEVRFLTNLVTLQLFKNQ 293
D N + DLS V LF ++
Sbjct: 593 DIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 2e-16
Identities = 28/244 (11%), Positives = 65/244 (26%), Gaps = 43/244 (17%)
Query: 46 WVSNNHFCNFTGITCNSDSSFVQEIELSNRNLKGTLPF------DSICQLQALHKLSLGF 99
++N I S + I+ S + + + + ++L
Sbjct: 383 SFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN 442
Query: 100 NSLYGEISKDLNNCVKLQYLDLGNN--------VFSGSFPEISSLNELQHLYLNLSGFSG 151
N + + + L ++L N + L + L + +
Sbjct: 443 NQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502
Query: 152 VFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNC------SIDGQIPV 205
+ + LV + + N F + FP Q + + L + N + P
Sbjct: 503 LSDDFRATTLPYLVGIDLSYNSF--SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560
Query: 206 EIGNLT---------------------ELINLELSDNNISGEIPSEIGNLVKLWRLELYN 244
I + L++ DN S + ++ L+
Sbjct: 561 GITLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFY 620
Query: 245 NQLS 248
++
Sbjct: 621 DKTQ 624
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 160 bits (408), Expect = 4e-43
Identities = 67/417 (16%), Positives = 130/417 (31%), Gaps = 30/417 (7%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFS 127
E+ L + +++ + + + + L L L N L LQ L L NN
Sbjct: 100 TELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158
Query: 128 GSFPE---ISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPD--Q 182
E I + + L+ L L+ + P + L L + + P+
Sbjct: 159 ALKSEELDIFANSSLKKLELSSNQIKEFSP-GCFHAIGRLFGLFLNNVQLGPSLTEKLCL 217
Query: 183 VVKLNKLNWLYLTNCSIDGQIPVEIGNL--TELINLELSDNNISGEIPSEIGNLVKLWRL 240
+ + L L+N + L T L L+LS NN++ L +L
Sbjct: 218 ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYF 277
Query: 241 ELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPA 300
L N + L L N+ + +F + +S
Sbjct: 278 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS--------------LASLPKIDDF 323
Query: 301 ELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLT-GPIPPDMCKRGTMRDL 359
K L +L++ N + G ++ +S + + + + L
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383
Query: 360 LML---QNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIW-GLPEVNIIDIALNQIE 415
+L +NK + ++ L+ + N + + W GL + I ++ N+
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443
Query: 416 GPITKDIENAKALNLLFAEYNRLSG--ELPEEISKATSLVVIKLNNNQLTGKIPASI 470
+L L L P +L ++ L+NN + +
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 3e-40
Identities = 75/441 (17%), Positives = 139/441 (31%), Gaps = 32/441 (7%)
Query: 51 HFCNFTGITCNS--DSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISK 108
+ + S + +++ N L + +L L L+L N L K
Sbjct: 33 THNQLRRLPAANFTRYSQLTSLDVGF-NTISKLEPELCQKLPMLKVLNLQHNELSQLSDK 91
Query: 109 DLNNCVKLQYLDLGNNVFSGSFPE-ISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSL 167
C L L L +N L L L+ +G S + + NL L
Sbjct: 92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL-GTQVQLENLQEL 150
Query: 168 SVGDNPFDPTPFPD-QVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGE 226
+ +N + + + L L L++ I P + L L L++ +
Sbjct: 151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPS 210
Query: 227 IPSEIG---NLVKLWRLELYNNQLSGKLPVGLRNL--TNLANFDASTNFLEGDLSEV-RF 280
+ ++ + L L N+QLS L TNL D S N L ++ +
Sbjct: 211 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 270
Query: 281 LTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQ-ELGSWAEFDF----- 334
L L L N L + L+L + ++ L +F F
Sbjct: 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330
Query: 335 ---IDVSENLLTGPIPPDMCKRGTMRDLLML-----QNKFTGEIPATYANCLT--LQRFR 384
+++ +N + G + +L L T+ + L
Sbjct: 331 LEHLNMEDNDIPGIKSNMFTG---LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387
Query: 385 VSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKD-IENAKALNLLFAEYNRLSGELP 443
++ N + L + ++D+ LN+I +T + + ++ YN+
Sbjct: 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 447
Query: 444 EEISKATSLVVIKLNNNQLTG 464
+ SL + L L
Sbjct: 448 NSFALVPSLQRLMLRRVALKN 468
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 3e-36
Identities = 74/419 (17%), Positives = 127/419 (30%), Gaps = 60/419 (14%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFS 127
++LS NL + DS L L L +N++ S L+ ++YL+L +
Sbjct: 251 TMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309
Query: 128 GSFP----------EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPT 177
S L L+HL + + G+ + NL LS+ ++
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS-NMFTGLINLKYLSLSNSFTSLR 368
Query: 178 PFPDQV---VKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIP-SEIGN 233
++ + + L+ L LT I L L L+L N I E+ E
Sbjct: 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 428
Query: 234 LVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEG---DLSEVRFLTNLVTLQLF 290
L ++ + L N+ + +L L+ S + L NL L L
Sbjct: 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488
Query: 291 KNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDM 350
N + L +KL L L N L
Sbjct: 489 NNNIANINDDMLEGLEKLEILDLQHNNLA------------------------------- 517
Query: 351 CKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIA 410
+ ++ G L + +N L E+ IID+
Sbjct: 518 ---------RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568
Query: 411 LNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKA-TSLVVIKLNNNQLTGKIPA 468
LN + N +L L + N ++ + A +L + + N +
Sbjct: 569 LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 1e-35
Identities = 69/371 (18%), Positives = 125/371 (33%), Gaps = 21/371 (5%)
Query: 114 VKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNP 173
V + D + + P+ + L L + + + + L SL VG N
Sbjct: 4 VSHEVADCSHLKLT-QVPD-DLPTNITVLNLTHNQLRRLPAA-NFTRYSQLTSLDVGFNT 60
Query: 174 FDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGN 233
P+ KL L L L + + T L L L N+I +
Sbjct: 61 I-SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119
Query: 234 LVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEG---DLSEVRFLTNLVTLQLF 290
L L+L +N LS L NL S N ++ + ++ ++L L+L
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179
Query: 291 KNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWA---EFDFIDVSENLLTGPIP 347
NQ P +L L L +L +L ++L + +S + L+
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239
Query: 348 PDM--CKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVN 405
K + L + N ++A L+ F + N+++ + GL V
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR 299
Query: 406 IID---------IALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIK 456
++ I+L + + K L L E N + G + +L +
Sbjct: 300 YLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359
Query: 457 LNNNQLTGKIP 467
L+N+ + +
Sbjct: 360 LSNSFTSLRTL 370
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 1e-34
Identities = 69/424 (16%), Positives = 137/424 (32%), Gaps = 40/424 (9%)
Query: 68 QEIELSNRNLKGTLP--FDSICQLQALHKLSLGFNSLYGEISKDLNNC--VKLQYLDLGN 123
+ L+N L +L ++ LSL + L + L LDL
Sbjct: 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257
Query: 124 NVFSGSFPE-ISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQ 182
N + + + L +L++ +L + +F SL + N+ L++ + +
Sbjct: 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS-HSLHGLFNVRYLNLKRSFTKQSISLAS 316
Query: 183 VVKLN--------KLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIG-- 232
+ K++ L L + + I G L L L LS++ S +
Sbjct: 317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFV 376
Query: 233 --NLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRF--LTNLVTLQ 288
L L L N++S L +L D N + +L+ + L N+ +
Sbjct: 377 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY 436
Query: 289 LFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFD---FIDVSENLLTGP 345
L N++ L L L L + + +D+S N +
Sbjct: 437 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKN-VDSSPSPFQPLRNLTILDLSNNNIANI 495
Query: 346 IPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVN 405
+ + L + N R+ ++ G + GL ++
Sbjct: 496 NDDMLEGLEKLEILDLQHNNLA----------------RLWKHANPGGPIYFLKGLSHLH 539
Query: 406 IIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGK 465
I+++ N + + ++ L ++ N L+ + SL + L N +T
Sbjct: 540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599
Query: 466 IPAS 469
Sbjct: 600 EKKV 603
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 4e-31
Identities = 66/348 (18%), Positives = 119/348 (34%), Gaps = 22/348 (6%)
Query: 17 FTCINSDELQILLNLKTSLKDSKSSIFSSWVSNNHFCNFTGITCNSDSSFVQEIELSNRN 76
+ S L L N++ + K S +S + ++ + + + N
Sbjct: 284 IQHLFSHSLHGLFNVRY--LNLKRSFTKQSISLASLPKIDDFSFQWLKC-LEHLNMED-N 339
Query: 77 LKGTLPFDSICQLQALHKLSLGFN--SLYGEISKDLNNCV--KLQYLDLGNNVFSGSFPE 132
+ + L L LSL + SL ++ + L L+L N S +
Sbjct: 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399
Query: 133 -ISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNW 191
S L L+ L L L+ + N+ + + N + + + L
Sbjct: 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL-QLTRNSFALVPSLQR 458
Query: 192 LYLTNCSIDG--QIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLS- 248
L L ++ P L L L+LS+NNI+ + L KL L+L +N L+
Sbjct: 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR 518
Query: 249 -------GKLPVGLRNLTNLANFDASTNFLEGDLSEV-RFLTNLVTLQLFKNQFSGEVPA 300
G L+ L++L + +N + EV + L L + L N + +
Sbjct: 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578
Query: 301 ELGKFKKLVNLSLYTNKLTGALPQELGSWAEF-DFIDVSENLLTGPIP 347
L +L+L N +T + G +D+ N
Sbjct: 579 VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 9e-30
Identities = 51/295 (17%), Positives = 90/295 (30%), Gaps = 34/295 (11%)
Query: 186 LNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNN 245
+ L LT+ + ++L +L++ N IS P L L L L +N
Sbjct: 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83
Query: 246 QLSGKLPVGLRNLTNLANFDASTNFLEG-DLSEVRFLTNLVTLQLFKNQFSGEVPAELGK 304
+LS TNL +N ++ + NL+TL L N S +
Sbjct: 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143
Query: 305 FKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLML-- 362
+ L L L NK+ + + L L
Sbjct: 144 LENLQELLLSNNKIQA-------------------------LKSEELDIFANSSLKKLEL 178
Query: 363 -QNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGI---WGLPEVNIIDIALNQIEGPI 418
N+ P + L ++N L ++ + + + ++ +Q+
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238
Query: 419 TKDIENAKALNL--LFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASIY 471
K NL L YN L+ + + L L N + S++
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-24
Identities = 42/232 (18%), Positives = 72/232 (31%), Gaps = 12/232 (5%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFS 127
+ ++L + L L+ + ++ L +N LQ L L
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467
Query: 128 G---SFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPF-------DPT 177
S L L L L+ + + L + L L + N +P
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPG 526
Query: 178 PFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKL 237
+ L+ L+ L L + D +L EL ++L NN++ S N V L
Sbjct: 527 GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586
Query: 238 WRLELYNNQLSGKLPVGLR-NLTNLANFDASTNFLEGDLSEVRFLTNLVTLQ 288
L L N ++ NL D N + + + N +
Sbjct: 587 KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINET 638
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 25/160 (15%), Positives = 52/160 (32%), Gaps = 3/160 (1%)
Query: 311 LSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEI 370
KLT +P +L + ++++ N L + + + L + N +
Sbjct: 9 ADCSHLKLT-QVPDDLPTNITV--LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE 65
Query: 371 PATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNL 430
P L+ + +N L + + + N I+ K L
Sbjct: 66 PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125
Query: 431 LFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470
L +N LS + +L + L+NN++ +
Sbjct: 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 1e-39
Identities = 76/499 (15%), Positives = 150/499 (30%), Gaps = 71/499 (14%)
Query: 23 DELQILLNLKTSLKDSKSSIFSSWVSNNHFCNFTGITCNSDSSFVQEIELSNRNLKGTLP 82
+ + L + +L +W + N T + N + + ++ G P
Sbjct: 269 KDYKALKAIWEALDGK------NWRYYSGTINNTIHSLNWNFN-------KELDMWGDQP 315
Query: 83 FDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEIS------SL 136
+ + LSL G + + +L+ L G + + S +
Sbjct: 316 GVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDM 375
Query: 137 NELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTN 196
+E + + + + N+++L+ ++ NP D + L LTN
Sbjct: 376 SEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN 435
Query: 197 CSIDGQIPVEIGNLTELINLELSDNNISG-------------------EIPSEIGNLVKL 237
I I LT+L + +++ + NL L
Sbjct: 436 RI--TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDL 493
Query: 238 WRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDL----------SEVRFLTNLVTL 287
+ELYN +LP L +L L + + + N + +
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553
Query: 288 QLFKNQFSG-EVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPI 346
+ N A L K KL L NK+ + G+ + + + N + I
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--LEAFGTNVKLTDLKLDYNQIEE-I 610
Query: 347 PPDMCKR-GTMRDLLMLQNKFTGEIPATYA--NCLTLQRFRVSNNSLKGTVPAGIWGLPE 403
P D C + L NK IP + + + S N + + +
Sbjct: 611 PEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669
Query: 404 VN-----IIDIALNQIEGPITKDIENAKALNLLFAEYNRLS-------GELPEEISKATS 451
+ ++ N+I+ T+ ++ + N ++
Sbjct: 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729
Query: 452 LVVIKLNNNQLTGKIPASI 470
L I L N+LT +
Sbjct: 730 LTTIDLRFNKLTS-LSDDF 747
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 3e-38
Identities = 65/425 (15%), Positives = 131/425 (30%), Gaps = 63/425 (14%)
Query: 58 ITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQ 117
T ++ + ++ S L+ L + L ++ L + +LQ
Sbjct: 460 FTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518
Query: 118 YLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPT 177
L++ N + + L + +G N +
Sbjct: 519 SLNIACNRGISAAQLKADWTRLAD---------------DEDTGPKIQIFYMGYNNLEEF 563
Query: 178 PFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIG-NLVK 236
P + K+ KL L + + + G +L +L+L N I EIP + +
Sbjct: 564 PASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQ 620
Query: 237 LWRLELYNNQLSGKLP--VGLRNLTNLANFDASTNFLEGDLSEV------RFLTNLVTLQ 288
+ L +N+L +P +++ + + D S N + + + N T+
Sbjct: 621 VEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679
Query: 289 LFKNQFSGEVPAELGKFKKLVNLSLYTNKLT-------GALPQELGSWAEFDFIDVSENL 341
L N+ + + L N +T + ID+ N
Sbjct: 680 LSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK 739
Query: 342 LTGPIPPDMCKRGTMRDLLML---QNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGI 398
LT + D T+ L + N F+ P N L+ F + +
Sbjct: 740 LTS-LSDDFRA-TTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQ---------- 786
Query: 399 WGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLN 458
D N+I I +L L N + ++ E+++ L ++ +
Sbjct: 787 --------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIA 835
Query: 459 NNQLT 463
+N
Sbjct: 836 DNPNI 840
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 2e-31
Identities = 47/386 (12%), Positives = 116/386 (30%), Gaps = 53/386 (13%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYG---------EISKDLNNCVKLQY 118
++EL N LP D + L L L++ N ++ D + K+Q
Sbjct: 494 TDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552
Query: 119 LDLGNNVFSGSFPE--ISSLNELQHLYL---NLSGFSGVFPWMSLGNMTNLVSLSVGDNP 173
+G N + + +L L + + G L L + N
Sbjct: 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE------AFGTNVKLTDLKLDYNQ 606
Query: 174 FDPTPFPDQVVK-LNKLNWLYLTNCSIDGQIP--VEIGNLTELINLELSDNNISGEIPS- 229
P+ +++ L ++ + IP ++ + +++ S N I E +
Sbjct: 607 I--EEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663
Query: 230 ----EIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLE--------GDLSE 277
+ + + L N++ + ++ S N +
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723
Query: 278 VRFLTNLVTLQLFKNQFSGEVPAEL--GKFKKLVNLSLYTNKLTGALPQELGSWAEFDFI 335
+ L T+ L N+ + + + L N+ + N + P + + ++
Sbjct: 724 YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAF 781
Query: 336 DVSENL------LTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNS 389
+ + P + ++ L + N ++ L +++N
Sbjct: 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEK--LTPQLYILDIADNP 838
Query: 390 LKGTVPAGIWGLPEVNIIDIALNQIE 415
+ E + + ++ +
Sbjct: 839 NISIDVTSVCPYIEAGMYVLLYDKTQ 864
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 2e-13
Identities = 32/240 (13%), Positives = 67/240 (27%), Gaps = 42/240 (17%)
Query: 46 WVSNNHFCNFTGITCNSDSSFVQEIELSNRNLKG----TLPFDSICQLQALHKLSLGFNS 101
S+N I + ++ S + + ++L +N
Sbjct: 625 GFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE 684
Query: 102 LYGEISKDLNNCVKLQYLDLGNN--------VFSGSFPEISSLNELQHLYLNLSGFSGVF 153
+ ++ + + L NN + L + L + + +
Sbjct: 685 IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS 744
Query: 154 PWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYL------TNCSIDGQIPVEI 207
+ L ++ V N F + FP Q + ++L + I Q P I
Sbjct: 745 DDFRATTLPYLSNMDVSYNCF--SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802
Query: 208 GNLTELI---------------------NLELSDNNI-SGEIPSEIGNLVKLWRLELYNN 245
LI L+++DN S ++ S + + LY+
Sbjct: 803 TTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 3e-39
Identities = 66/440 (15%), Positives = 127/440 (28%), Gaps = 29/440 (6%)
Query: 51 HFCNFTGITCNS--DSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISK 108
N + ++E+ +++ ++ + L L L L N +
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
Query: 109 DLNNCVKLQY----LDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNL 164
DL ++ LDL N + P L L L + S + + L
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGL 227
Query: 165 VSLSVGDNPFD-----PTPFPDQVVKLNKLNWLYLTNCSID---GQIPVEIGNLTELINL 216
+ F + L L +D I LT + +
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287
Query: 217 ELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS 276
L I LEL N + + L++L L ++
Sbjct: 288 SLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD 345
Query: 277 EVRFLTNLVTLQLFKNQ--FSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDF 334
L +L L L +N F G L L L N + + + +
Sbjct: 346 ----LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEH 400
Query: 335 IDVSENLLTGPIPPDMCKRGTMRDLLML---QNKFTGEIPATYANCLTLQRFRVSNNSLK 391
+D + L + +R+L+ L + +L+ +++ NS +
Sbjct: 401 LDFQHSNLKQMSEFSVFLS--LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458
Query: 392 GTVPAGIWG-LPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKAT 450
I+ L + +D++ Q+E + +L +L +N
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 518
Query: 451 SLVVIKLNNNQLTGKIPASI 470
SL V+ + N + +
Sbjct: 519 SLQVLDYSLNHIMTSKKQEL 538
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 4e-39
Identities = 77/448 (17%), Positives = 138/448 (30%), Gaps = 50/448 (11%)
Query: 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGN 123
+ ++LS L+ L S L L L + + L L L
Sbjct: 27 PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85
Query: 124 NVFSGSFPE-ISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQ 182
N S L+ LQ L + + + +G++ L L+V N P+
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEY 144
Query: 183 VVKLNKLNWLYLTNCSIDGQIPVEIGNLTEL----INLELSDNNISGEIPSEIGNLVKLW 238
L L L L++ I ++ L ++ ++L+LS N ++ P + +L
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLH 203
Query: 239 RLELYNNQLSGKLP----------------------------------VGLRNLTNLANF 264
+L L NN S + GL NLT
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263
Query: 265 DASTNFLEGDLSEV-RFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALP 323
A ++ D+ ++ LTN+ + L +L L K
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPT 321
Query: 324 QELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRF 383
+L S F + N DL F G + +L+
Sbjct: 322 LKLKSLKRLTF---TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 384 RVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDI-ENAKALNLLFAEYNRLSGEL 442
+S N + T+ + GL ++ +D + ++ + + + L L +
Sbjct: 379 DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437
Query: 443 PEEISKATSLVVIKLNNNQLTGKIPASI 470
+ +SL V+K+ N I
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDI 465
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 5e-27
Identities = 52/297 (17%), Positives = 105/297 (35%), Gaps = 11/297 (3%)
Query: 25 LQILLNLKTSLKDSKSSIFSSWVSNNHFCN-FTGITCNSDSSFVQEIELS-NRNLKGTLP 82
Q L + + S N D ++ ++LS N
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC 365
Query: 83 FDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPE--ISSLNELQ 140
S +L L L FN + +S + +L++LD ++ SL L
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424
Query: 141 HLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSID 200
+L ++ + F +++L L + N F PD +L L +L L+ C ++
Sbjct: 425 YLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
Query: 201 GQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNL-T 259
P +L+ L L +S NN L L L+ N + L++ +
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543
Query: 260 NLANFDASTNFLEGDLSE---VRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSL 313
+LA + + N ++++ + L + + P++ +++L++
Sbjct: 544 SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG-MPVLSLNI 599
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 1e-34
Identities = 65/420 (15%), Positives = 143/420 (34%), Gaps = 25/420 (5%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQ--YLDLGNNV 125
+ + L + ++ + + L L N+++ +D+++ + L+L N
Sbjct: 132 ESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190
Query: 126 FSGSFPEISSLNELQHLYLNLSGFSGV-FPWMSLGNMTNLVSLSVGDNPF-DPTPFPDQV 183
+G P Q L + V F + + +L + D D +P +
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250
Query: 184 VKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELY 243
+ + + L + L L+L+ ++S E+PS + L L +L L
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLS 309
Query: 244 NNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQ--FSGEVP 299
N+ + N +L + N +L L NL L L + S
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369
Query: 300 AELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDL 359
+L L +L+L N+ + + + +D++ L ++L
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ-----SPFQNL 424
Query: 360 LMLQ------NKFTGEIPATYANCLTLQRFRVSNNSLKGTV---PAGIWGLPEVNIIDIA 410
+L+ + + LQ + N + L + I+ ++
Sbjct: 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484
Query: 411 LNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470
+ + K +N + +NRL+ E +S + + L +N ++ +P+ +
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLL 543
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 2e-30
Identities = 80/418 (19%), Positives = 138/418 (33%), Gaps = 40/418 (9%)
Query: 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGN 123
+ + +E S L T+ + +L L L L +Y + +L L L
Sbjct: 32 PNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90
Query: 124 NVFSGSFPEI-SSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQ 182
N S L+HL+ +G S + + L N L SL +G N P
Sbjct: 91 NPLIFMAETALSGPKALKHLFFIQTGISSIDF-IPLHNQKTLESLYLGSNHISSIKLPKG 149
Query: 183 VVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLEL--SDNNISGEIPSEIGNLVKLWRL 240
KL L N +I ++ +L + NL L + N+I+ I + L
Sbjct: 150 F-PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSL 207
Query: 241 ELYNNQLSGKLPVGLRN-----LTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFS 295
Q + GL+N L D + + E ++ ++ L K+ F
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267
Query: 296 GEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGT 355
F L L L L+ +P + T
Sbjct: 268 NISSNTFHCFSGLQELDLTATHLSE-------------------------LPSGLVGLST 302
Query: 356 MRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAG-IWGLPEVNIIDIALNQI 414
++ L++ NKF + +N +L + N+ + + G + L + +D++ + I
Sbjct: 303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362
Query: 415 E--GPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470
E + N L L YN E + L ++ L +L K S
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 6e-29
Identities = 65/335 (19%), Positives = 118/335 (35%), Gaps = 12/335 (3%)
Query: 68 QEIELSNRNLKG--TLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNV 125
+ + + F+ +C++ + ++L + + S + LQ LDL
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMS-VESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289
Query: 126 FSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVK 185
S + L+ L+ L L+ + F + +S N +L LS+ N +
Sbjct: 290 LSELPSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348
Query: 186 LNKLNWLYLTNCSID--GQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELY 243
L L L L++ I+ +++ NL+ L +L LS N +L L+L
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408
Query: 244 NNQLSGKLPVG-LRNLTNLANFDASTNFLEGDLSEV-RFLTNLVTLQLFKNQFSGEVPAE 301
+L K +NL L + S + L+ ++ L L L L N F +
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK 468
Query: 302 LGKFKKLVN---LSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRD 358
+ L L L L+ S + +D+S N LT +
Sbjct: 469 TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS-SSIEALSHLKGIY 527
Query: 359 LLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGT 393
L + N + +P+ + + N L T
Sbjct: 528 LNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 1e-22
Identities = 51/277 (18%), Positives = 100/277 (36%), Gaps = 10/277 (3%)
Query: 48 SNNHFCNFTGITCNSDSSFVQEIELSNRNLKG-TLPFDSICQLQALHKLSLGFNSLYGEI 106
N G C + ++E++LS+ +++ + L L L+L +N
Sbjct: 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392
Query: 107 SKDLNNCVKLQYLDLGNNVFSGSFPE--ISSLNELQHLYLNLSGFSGVFPWMSLGNMTNL 164
++ C +L+ LDL + +L+ L+ L L+ S + L
Sbjct: 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI-SSEQLFDGLPAL 451
Query: 165 VSLSVGDNPFDPTPF--PDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNN 222
L++ N F + + L +L L L+ C + +L + +++LS N
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511
Query: 223 ISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLT 282
++ + +L + L L +N +S LP L L+ + N L+ S + FL
Sbjct: 512 LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLE 570
Query: 283 NLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLT 319
+ + L + L L+
Sbjct: 571 ---WYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 24/160 (15%), Positives = 49/160 (30%), Gaps = 3/160 (1%)
Query: 311 LSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEI 370
+ L +P L + E ++ S N+L + + L + + +
Sbjct: 17 YNCENLGLN-EIPGTLPNSTEC--LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73
Query: 371 PATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNL 430
T+ + L ++ N L + G + + I + N K L
Sbjct: 74 EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133
Query: 431 LFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470
L+ N +S + L V+ NN + +
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM 173
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 4e-34
Identities = 98/412 (23%), Positives = 152/412 (36%), Gaps = 34/412 (8%)
Query: 53 CNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNN 112
N T +D V ++ +K D + L L +++ N L L N
Sbjct: 34 TNVTDTVSQTDLDQVTTLQADRLGIKS---IDGVEYLNNLTQINFSNNQLTDITP--LKN 88
Query: 113 CVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDN 172
KL + + NN + +++L L L L + + + P L N+TNL L + N
Sbjct: 89 LTKLVDILMNNNQIA-DITPLANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSN 144
Query: 173 PF-DPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEI 231
D + L L L N D + NLT L L++S N +S S +
Sbjct: 145 TISDISALS----GLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSD--ISVL 195
Query: 232 GNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFK 291
L L L NNQ+S P+G LTNL + N L+ D+ + LTNL L L
Sbjct: 196 AKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLAN 252
Query: 292 NQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMC 351
NQ S P L KL L L N+++ L ++++EN L P
Sbjct: 253 NQISNLAP--LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISPISNL 308
Query: 352 KRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIAL 411
K + L + N + P ++ LQR NN + + + L +N +
Sbjct: 309 KN--LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGH 362
Query: 412 NQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463
NQI + N + L + + + +K L
Sbjct: 363 NQISDLT--PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 412
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 2e-31
Identities = 86/428 (20%), Positives = 169/428 (39%), Gaps = 38/428 (8%)
Query: 41 SIFSSWVSNNHFCNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFN 100
+ S+ ++ + I ++ + + L N+ T+ L + L
Sbjct: 2 PLGSATITQD--TPINQIFTDTALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRL 56
Query: 101 SLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGN 160
+ + + L ++ NN + + +L +L + +N + + + P L N
Sbjct: 57 GI--KSIDGVEYLNNLTQINFSNNQLT-DITPLKNLTKLVDILMNNNQIADITP---LAN 110
Query: 161 MTNLVSLSVGDNPF-DPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELS 219
+TNL L++ +N D P L LN L L++ +I + LT L L
Sbjct: 111 LTNLTGLTLFNNQITDIDPL----KNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG 164
Query: 220 DNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVR 279
N ++ P + NL L RL++ +N++S L LTNL + A+ N + D++ +
Sbjct: 165 -NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS-DITPLG 218
Query: 280 FLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSE 339
LTNL L L NQ L L +L L N+++ P L + + +
Sbjct: 219 ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 274
Query: 340 NLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIW 399
N ++ P + +L + +N+ P +N L + N++ P +
Sbjct: 275 NQISNISPLAGLTA--LTNLELNENQLEDISPI--SNLKNLTYLTLYFNNISDISP--VS 328
Query: 400 GLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNN 459
L ++ + N++ + + N +N L A +N++S ++ T + + LN+
Sbjct: 329 SLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISD--LTPLANLTRITQLGLND 384
Query: 460 NQLTGKIP 467
T
Sbjct: 385 QAWTNAPV 392
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 4e-31
Identities = 89/398 (22%), Positives = 143/398 (35%), Gaps = 32/398 (8%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFS 127
+I SN L P L L + + N + L N L L L NN +
Sbjct: 71 TQINFSNNQLTDITPLK---NLTKLVDILMNNNQI--ADITPLANLTNLTGLTLFNNQIT 125
Query: 128 GSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLN 187
+ +L L L L+ + S + L +T+L LS G+ D P L
Sbjct: 126 -DIDPLKNLTNLNRLELSSNTISDISA---LSGLTSLQQLSFGNQVTDLKPL----ANLT 177
Query: 188 KLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQL 247
L L +++ + + LT L +L ++N IS P +G L L L L NQL
Sbjct: 178 TLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 233
Query: 248 SGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKK 307
L +LTNL + D + N + +L+ + LT L L+L NQ S P L
Sbjct: 234 KD--IGTLASLTNLTDLDLANNQIS-NLAPLSGLTKLTELKLGANQISNISP--LAGLTA 288
Query: 308 LVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFT 367
L NL L N+L + + ++ + N ++ P + ++ L NK +
Sbjct: 289 LTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISPVSSLTK--LQRLFFYNNKVS 344
Query: 368 GEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKA 427
++ AN + +N + P + L + + + N
Sbjct: 345 D--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSI 400
Query: 428 LNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGK 465
N + L P IS S + N +
Sbjct: 401 PNTVKNVTGALI--APATISDGGSYTEPDITWNLPSYT 436
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 7e-25
Identities = 70/305 (22%), Positives = 109/305 (35%), Gaps = 24/305 (7%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFS 127
+ +++S+ + + +L L L N + L L L L N
Sbjct: 180 ERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 234
Query: 128 GSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPF-DPTPFPDQVVKL 186
++SL L L L + S + P L +T L L +G N + +P L
Sbjct: 235 -DIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISPL----AGL 286
Query: 187 NKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQ 246
L L L ++ P I NL L L L NNIS P + +L KL RL YNN+
Sbjct: 287 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNK 342
Query: 247 LSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFK 306
+S L NLTN+ A N + DL+ + LT + L L ++
Sbjct: 343 VSD--VSSLANLTNINWLSAGHNQIS-DLTPLANLTRITQLGLNDQAWTNAPVNYKANVS 399
Query: 307 KLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKF 366
+ T L P + + D++ NL + + F
Sbjct: 400 IPNTVKNVTGALI--APATISDGGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTF 456
Query: 367 TGEIP 371
+G +
Sbjct: 457 SGTVT 461
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 3e-33
Identities = 81/352 (23%), Positives = 130/352 (36%), Gaps = 25/352 (7%)
Query: 116 LQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFD 175
L + FP + L E L + + V + ++ L V
Sbjct: 2 AATLATLPAPINQIFP-DADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGEKVA 57
Query: 176 PTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLV 235
+ L L +L L I P + NL +L NL + N I+ S + NL
Sbjct: 58 SIQG---IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLT 110
Query: 236 KLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFS 295
L L L + +S P L NLT + + + N DLS + +T L L + +++
Sbjct: 111 NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK 168
Query: 296 GEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGT 355
+ L +LSL N++ L S + N +T P R
Sbjct: 169 D--VTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITPVANMTR-- 222
Query: 356 MRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIE 415
+ L + NK T P AN L + N + + + L ++ ++++ NQI
Sbjct: 223 LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQIS 278
Query: 416 GPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIP 467
+ N LN LF N+L E E I T+L + L+ N +T P
Sbjct: 279 DI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 2e-31
Identities = 71/377 (18%), Positives = 142/377 (37%), Gaps = 51/377 (13%)
Query: 88 QLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLS 147
L + L S+ ++ + L + + S I L L++L LN +
Sbjct: 20 DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQGIEYLTNLEYLNLNGN 76
Query: 148 GFSGVFPWMSLGNMTNLVSLSVGDNPF-DPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVE 206
+ + P L N+ L +L +G N D + L L LYL +I P
Sbjct: 77 QITDISP---LSNLVKLTNLYIGTNKITDISALQ----NLTNLRELYLNEDNISDISP-- 127
Query: 207 IGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDA 266
+ NLT++ +L L N+ S + N+ L L + +++ P+ NLT+L +
Sbjct: 128 LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTPIA--NLTDLYSLSL 184
Query: 267 STNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQEL 326
+ N +E D+S + LT+L + NQ + P + +L +L + NK+T L
Sbjct: 185 NYNQIE-DISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD--LSPL 239
Query: 327 GSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVS 386
+ ++ ++++ N ++ + L+ V
Sbjct: 240 ANLSQLTWLEIGTNQISDINAV--------------------------KDLTKLKMLNVG 273
Query: 387 NNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEI 446
+N + + + L ++N + + NQ+ + I L LF N ++ +
Sbjct: 274 SNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI--RPL 329
Query: 447 SKATSLVVIKLNNNQLT 463
+ + + N +
Sbjct: 330 ASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 4e-29
Identities = 70/350 (20%), Positives = 145/350 (41%), Gaps = 28/350 (8%)
Query: 67 VQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVF 126
L ++ + + +L+++ KL + + + + L+YL+L N
Sbjct: 24 GIRAVLQKASVTDVVTQE---ELESITKLVVAGEKV--ASIQGIEYLTNLEYLNLNGNQI 78
Query: 127 SGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPF-DPTPFPDQVVK 185
+ +S+L +L +LY+ + + + L N+TNL L + ++ D +P
Sbjct: 79 T-DISPLSNLVKLTNLYIGTNKITDISA---LQNLTNLRELYLNEDNISDISPL----AN 130
Query: 186 LNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNN 245
L K+ L L + + N+T L L ++++ + + I NL L+ L L N
Sbjct: 131 LTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYN 187
Query: 246 QLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKF 305
Q+ P L +LT+L F A N + D++ V +T L +L++ N+ + + L
Sbjct: 188 QIEDISP--LASLTSLHYFTAYVNQIT-DITPVANMTRLNSLKIGNNKITD--LSPLANL 242
Query: 306 KKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNK 365
+L L + TN+++ + + ++V N ++ + + + L + N+
Sbjct: 243 SQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDISVLNNLSQ--LNSLFLNNNQ 298
Query: 366 FTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIE 415
E L +S N + P + L +++ D A I+
Sbjct: 299 LGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 3e-29
Identities = 47/307 (15%), Positives = 90/307 (29%), Gaps = 20/307 (6%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFS 127
+ + D + Q Q + + N Q
Sbjct: 15 ENLYFQGSTALRPYH-DVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRALK 69
Query: 128 GSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLN 187
+ + + + L L +++L +++ PD + +
Sbjct: 70 ATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL--MELPDTMQQFA 127
Query: 188 KLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGN---------LVKLW 238
L L L + +P I +L L L + E+P + + LV L
Sbjct: 128 GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186
Query: 239 RLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEV 298
L L + LP + NL NL + + L + L L L L
Sbjct: 187 SLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY 245
Query: 299 PAELGKFKKLVNLSLY-TNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMR 357
P G L L L + L LP ++ + + +D+ + +P + +
Sbjct: 246 PPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304
Query: 358 DLLMLQN 364
+L+ +
Sbjct: 305 IILVPPH 311
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 4e-29
Identities = 54/286 (18%), Positives = 95/286 (33%), Gaps = 21/286 (7%)
Query: 71 ELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNC--VKLQYLDLGNNVFSG 128
N + + +L + L + L+L +
Sbjct: 37 RHYNADRNRWHSAWRQANSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP- 94
Query: 129 SFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLN 187
FP + L+ LQH+ ++ +G + ++ L +L++ NP P + LN
Sbjct: 95 QFPDQAFRLSHLQHMTIDAAGLMEL--PDTMQQFAGLETLTLARNPL--RALPASIASLN 150
Query: 188 KLNWLYLTNCSIDGQIPVEIGN---------LTELINLELSDNNISGEIPSEIGNLVKLW 238
+L L + C ++P + + L L +L L I +P+ I NL L
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLK 209
Query: 239 RLELYNNQLSGKLPVGLRNLTNLANFDAS-TNFLEGDLSEVRFLTNLVTLQLFKNQFSGE 297
L++ N+ LS L + +L L D L L L L
Sbjct: 210 SLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268
Query: 298 VPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLT 343
+P ++ + +L L L LP + I V +L
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 3e-28
Identities = 55/332 (16%), Positives = 97/332 (29%), Gaps = 58/332 (17%)
Query: 7 SLCLLLCLPFFTCINSDELQILLNLKTSLKDSKSSIFSSWVSNNHFCNFTGITCNSDSSF 66
+ + NS+ QI +LK + + +
Sbjct: 40 NADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPG----------------- 82
Query: 67 VQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVF 126
+EL + L P D +L L +++ L E+ + L+ L L N
Sbjct: 83 RVALELRSVPLP-QFP-DQAFRLSHLQHMTIDAAGL-MELPDTMQQFAGLETLTLARNPL 139
Query: 127 SGSFP-EISSLNELQHLYLNL--------SGFSGVFPWMSLGNMTNLVSLSVGDNPFDPT 177
+ P I+SLN L+ L + + + NL SL +
Sbjct: 140 R-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI--R 196
Query: 178 PFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKL 237
P + L L L + N + + I +L +L L+L P G L
Sbjct: 197 SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255
Query: 238 WRLELYN-NQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSG 296
RL L + + L LP+ + LT L L L
Sbjct: 256 KRLILKDCSNLL-TLPLDIHRLTQL-----------------------EKLDLRGCVNLS 291
Query: 297 EVPAELGKFKKLVNLSLYTNKLTGALPQELGS 328
+P+ + + + + + +
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQAQLDQHRPVA 323
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 2e-27
Identities = 55/380 (14%), Positives = 106/380 (27%), Gaps = 71/380 (18%)
Query: 84 DSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLY 143
L ++ L+ + D + N Q
Sbjct: 6 HHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN---SNNPQIET 62
Query: 144 LNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQI 203
+ V+L + P FPDQ +L+ L + + + ++
Sbjct: 63 RTGRALKATADLLEDATQPGRVALELRSVPL--PQFPDQAFRLSHLQHMTIDAAGLM-EL 119
Query: 204 PVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLAN 263
P + L L L+ N + +P+ I +L +L L + +LP L +
Sbjct: 120 PDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS-- 176
Query: 264 FDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALP 323
E + L NL +L+L +PA + + L +L + + L+ AL
Sbjct: 177 ------------GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALG 222
Query: 324 QELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRF 383
+ + + +D+ P + L+R
Sbjct: 223 PAIHHLPKLEELDLRGC-----------------------TALR-NYPPIFGGRAPLKRL 258
Query: 384 RVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELP 443
+ + S T+P I L L L LP
Sbjct: 259 ILKDCSNLLTLPLDIHRL------------------------TQLEKLDLRGCVNLSRLP 294
Query: 444 EEISKATSLVVIKLNNNQLT 463
I++ + +I + +
Sbjct: 295 SLIAQLPANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 2e-18
Identities = 38/277 (13%), Positives = 88/277 (31%), Gaps = 22/277 (7%)
Query: 206 EIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFD 265
+ + NL + + + + + + + N N
Sbjct: 7 HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIET 62
Query: 266 ASTNFLEGDLSEVRFLT--NLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALP 323
+ L+ + T V L+L + P + + L ++++ L LP
Sbjct: 63 RTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELP 120
Query: 324 QELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDL-LMLQNKFT--------GEIPATY 374
+ +A + + ++ N L +P + +R+L + + T + +
Sbjct: 121 DTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179
Query: 375 ANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAE 434
+ LQ R+ ++ ++PA I L + + I + + + I + L L
Sbjct: 180 QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLR 237
Query: 435 YNRLSGELPEEISKATSLVVIKL-NNNQLTGKIPASI 470
P L + L + + L +P I
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDI 273
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 5e-05
Identities = 18/168 (10%), Positives = 38/168 (22%), Gaps = 10/168 (5%)
Query: 306 KKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNK 365
NL + L W D + + +
Sbjct: 12 SGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS-----NNPQIETRTGR 66
Query: 366 FTGEIPATYANC--LTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIE 423
+ + + L P + L + + I + + ++
Sbjct: 67 ALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDTMQ 124
Query: 424 NAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASIY 471
L L N L LP I+ L + + ++P +
Sbjct: 125 QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLA 171
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 3e-28
Identities = 62/401 (15%), Positives = 119/401 (29%), Gaps = 45/401 (11%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFS 127
+ ++++ +LK + +L L N L + DL KL+ L+L +NV
Sbjct: 13 KIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71
Query: 128 GSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLN 187
++ SL+ L+ L LN + L ++ +L +N +
Sbjct: 72 -ETLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNISRVSCS----RGQ 120
Query: 188 KLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISG-EIPSEIGNLVKLWRLELYNNQ 246
+YL N I ++ G + + L+L N I + L L L N
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180
Query: 247 LSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFK 306
+ D+ L TL L N+ + + E
Sbjct: 181 IY-------------------------DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAA 214
Query: 307 KLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKF 366
+ +SL NKL + + L + D+ N D R + +
Sbjct: 215 GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTV 272
Query: 367 TGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEG----PITKDI 422
C + L + + AL +G + +
Sbjct: 273 KKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECER 332
Query: 423 ENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463
EN + A + + + + + + ++ L
Sbjct: 333 ENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD 373
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-23
Identities = 56/396 (14%), Positives = 113/396 (28%), Gaps = 36/396 (9%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFS 127
+ + LS+ L TL + L L L L N + ++L ++ L NN S
Sbjct: 61 ELLNLSSNVLYETLDLE---SLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS 112
Query: 128 GSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLN 187
S +++YL + + + + G + + L + N D F + +
Sbjct: 113 -RVSC-SRGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169
Query: 188 KLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQL 247
L L L I + ++ +L L+LS N ++ + E + + + L NN+L
Sbjct: 170 TLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226
Query: 248 SGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKK 307
+ LR NL +FD N F N + K +
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285
Query: 308 LVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFT 367
+ + LL Q T
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHA--------------------LLSGQGSET 325
Query: 368 GEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKA 427
+ N + + + ++ ++ ++
Sbjct: 326 ERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAE 385
Query: 428 LNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463
L+ + EL + + L +++ +
Sbjct: 386 LDGTLQQAVGQ-IELQHATEEQSPLQLLRAIVKRYE 420
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 92.6 bits (230), Expect = 2e-20
Identities = 48/278 (17%), Positives = 101/278 (36%), Gaps = 36/278 (12%)
Query: 186 LNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNN 245
N+ +T+ S+ + + + L+LS N +S +++ KL L L +N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 246 QLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKF 305
L L L +L+ L D + N + E+ ++ TL N S V
Sbjct: 69 VLYETLD--LESLSTLRTLDLNNN----YVQELLVGPSIETLHAANNNIS-RVSCSR--G 119
Query: 306 KKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNK 365
+ N+ L NK+T + G + ++D+ N +
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID---------------------- 157
Query: 366 FTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENA 425
T A+ TL+ + N + V + ++ +D++ N++ + + ++A
Sbjct: 158 -TVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSA 213
Query: 426 KALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463
+ + N+L + + + + +L L N
Sbjct: 214 AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 3e-11
Identities = 41/246 (16%), Positives = 81/246 (32%), Gaps = 16/246 (6%)
Query: 227 IPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEG-DLSEVRFLTNLV 285
I N + ++ ++ L L ++ N+ D S N L +++ T L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 286 TLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGP 345
L L N +L L L L N + EL + + + N ++
Sbjct: 62 LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR- 113
Query: 346 IPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKG-TVPAGIWGLPEV 404
+ + +++ + NK T +Q + N + +
Sbjct: 114 VSCSRGQG--KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171
Query: 405 NIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTG 464
+++ N I + + L L N+L+ + E A + I L NN+L
Sbjct: 172 EHLNLQYNFIYD-VKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227
Query: 465 KIPASI 470
I ++
Sbjct: 228 LIEKAL 233
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 2e-10
Identities = 39/256 (15%), Positives = 74/256 (28%), Gaps = 8/256 (3%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFS 127
+ ++LS+ L + + +SL N L I K L L++ DL N F
Sbjct: 194 KTLDLSSNKLA-FMG-PEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFH 250
Query: 128 GSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFD--PTPFPDQVVK 185
+ + + + T G + P PF D+++
Sbjct: 251 CGTLRDFFSKNQRVQTVAKQTVKKL-TGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIA 309
Query: 186 LNKLNWLYLT-NCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYN 244
L + L+ S ++ E N ++ I LE
Sbjct: 310 LKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK 369
Query: 245 NQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFS-GEVPAELG 303
L ++ G R L + L L+ ++ V +
Sbjct: 370 KALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSV 429
Query: 304 KFKKLVNLSLYTNKLT 319
+ + + +Y +K T
Sbjct: 430 QNNAIRDWDMYQHKET 445
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 3e-28
Identities = 64/417 (15%), Positives = 127/417 (30%), Gaps = 22/417 (5%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDL----NNCVKLQYLDLGN 123
+++ +++ + L L + L +N + DL N LD+
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190
Query: 124 NVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPF-------DP 176
N + +L L L + S L N+ L + F
Sbjct: 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250
Query: 177 TPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVK 236
P + + ++ LT + V+ L + + L+ +I ++ K
Sbjct: 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFK 308
Query: 237 LWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFS- 295
L + QL + L L +L + N +V L +L L L +N S
Sbjct: 309 WQSLSIIRCQLKQFPTLDLPFLKSL---TLTMNKGSISFKKV-ALPSLSYLDLSRNALSF 364
Query: 296 -GEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKR- 353
G L +L L N + E +D + L
Sbjct: 365 SGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423
Query: 354 GTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIW-GLPEVNIIDIALN 412
+ L + + + +L +++ NS K + ++ + +D++
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483
Query: 413 QIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPAS 469
Q+E + L LL +N L ++ SL + + N++
Sbjct: 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 1e-27
Identities = 75/423 (17%), Positives = 133/423 (31%), Gaps = 32/423 (7%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFS 127
+ L+ ++ S L +L L L S + + L+ L++ +N
Sbjct: 83 SNLILTGNPIQS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141
Query: 128 G--SFPEISSLNELQHLYLNLSGFSGVFPWM--SLGNMT-NLVSLSVGDNPFDPTPFPDQ 182
S+L L H+ L+ + + L +SL + NP DQ
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI--DFIQDQ 199
Query: 183 VVKLNKLNWLYLTNCSIDGQIPVE-IGNLTELINLELSDNNISGEI------PSEIGNLV 235
+ KL+ L L I + NL L L E PS + L
Sbjct: 200 AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC 259
Query: 236 KLWRLELY--NNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQ 293
+ E V L N++ + ++ L +V +L + + Q
Sbjct: 260 DVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQ 318
Query: 294 FSGEVPAELGKFKKLVNLSLYTNKLTGALP-QELGSWAEFDFIDVSENLLTGPIPPDMCK 352
+L L +L+L NK + + L S + +D+S N L+
Sbjct: 319 LKQFPTLDL---PFLKSLTLTMNKGSISFKKVALPSLSY---LDLSRNALSF-SGCCSYS 371
Query: 353 RGTMRDLLML---QNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIW-GLPEVNIID 408
L L N + A + LQ +++LK + L ++ +D
Sbjct: 372 DLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430
Query: 409 IALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEI-SKATSLVVIKLNNNQLTGKIP 467
I+ + +LN L N + + T+L + L+ QL
Sbjct: 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490
Query: 468 ASI 470
Sbjct: 491 GVF 493
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 6e-23
Identities = 53/252 (21%), Positives = 83/252 (32%), Gaps = 12/252 (4%)
Query: 48 SNNHFCNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLY--GE 105
F + F++ + L+ + + L +L L L N+L G
Sbjct: 315 IRCQLKQFPTLDL----PFLKSLTLTMNKGSISFKKVA---LPSLSYLDLSRNALSFSGC 367
Query: 106 ISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLV 165
S L++LDL N L ELQHL S V + + ++ L+
Sbjct: 368 CSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427
Query: 166 SLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEI-GNLTELINLELSDNNIS 224
L + F + L LN L + S + N T L L+LS +
Sbjct: 428 YLDISYTNTK-IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486
Query: 225 GEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEG-DLSEVRFLTN 283
L +L L + +N L L +L+ D S N +E F +
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKS 546
Query: 284 LVTLQLFKNQFS 295
L L N +
Sbjct: 547 LAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 3e-19
Identities = 52/323 (16%), Positives = 100/323 (30%), Gaps = 47/323 (14%)
Query: 186 LNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNN 245
++L WL L+ C I+ L L NL L+ N I P L L L
Sbjct: 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114
Query: 246 QLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQFSGEVPAELG 303
+L+ + L L + + NF+ F LTNLV + L N +L
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174
Query: 304 KFKKL----VNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCK------- 352
++ ++L + N + + + + + + N + I +
Sbjct: 175 FLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHV 233
Query: 353 --------------------------RGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVS 386
T+ + + + + + ++
Sbjct: 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293
Query: 387 NNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEI 446
S+ + + + I Q++ T D+ K+L L N+ S + +
Sbjct: 294 GVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTL---TMNKGS--ISFKK 346
Query: 447 SKATSLVVIKLNNNQLTGKIPAS 469
SL + L+ N L+ S
Sbjct: 347 VALPSLSYLDLSRNALSFSGCCS 369
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 16/101 (15%), Positives = 36/101 (35%)
Query: 364 NKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIE 423
N +++N LQ +S ++ GL ++ + + N I+
Sbjct: 42 NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS 101
Query: 424 NAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTG 464
+L L A +L+ I + +L + + +N +
Sbjct: 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 113 bits (283), Expect = 7e-27
Identities = 70/302 (23%), Positives = 112/302 (37%), Gaps = 44/302 (14%)
Query: 162 TNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDN 221
L+VG++ T PD + + L + + ++ +P L LE+S N
Sbjct: 40 NGNAVLNVGESGL--TTLPDCL--PAHITTLVIPDNNLT-SLPALPPELR---TLEVSGN 91
Query: 222 NISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFL 281
++ +P L++L L LP GL L N L L
Sbjct: 92 QLT-SLPVLPPGLLELSIFSNPLTHLP-ALPSGLCKL------WIFGNQLT-SLPV--LP 140
Query: 282 TNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENL 341
L L + NQ + +PA + L L Y N+LT +LP E + VS+N
Sbjct: 141 PGLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLT-SLPMLPSGLQE---LSVSDNQ 192
Query: 342 LTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGL 401
L +P + L N+ T +PA + L+ VS N L ++P L
Sbjct: 193 LAS-LPTLP---SELYKLWAYNNRLT-SLPALPSG---LKELIVSGNRLT-SLPVLPSEL 243
Query: 402 PEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQ 461
E+ + L + + L L N+L+ LPE + +S + L N
Sbjct: 244 KELMVSGNRLTSLPMLPSG-------LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 295
Query: 462 LT 463
L+
Sbjct: 296 LS 297
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 2e-24
Identities = 65/298 (21%), Positives = 108/298 (36%), Gaps = 43/298 (14%)
Query: 67 VQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVF 126
+ + + + NL +LP +L+ L + N L + ++L
Sbjct: 63 ITTLVIPDNNLT-SLP-ALPPELR---TLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHL 116
Query: 127 SGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKL 186
S L +L L+ + P L LSV DN P
Sbjct: 117 P---ALPSGLCKLWIFGNQLTSLPVLPP--------GLQELSVSDNQL--ASLPAL---P 160
Query: 187 NKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQ 246
++L L+ N + +P+ L E L +SDN ++ +P+ L KLW YNN+
Sbjct: 161 SELCKLWAYNNQLT-SLPMLPSGLQE---LSVSDNQLA-SLPTLPSELYKLW---AYNNR 212
Query: 247 LSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFK 306
L+ LP L L S N L L + L L + N+ + +P
Sbjct: 213 LT-SLPALPSGLKEL---IVSGNRLT-SLPV--LPSELKELMVSGNRLT-SLPMLPS--- 261
Query: 307 KLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQN 364
L++LS+Y N+LT LP+ L + +++ N L+ + T
Sbjct: 262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQALREITSAPGYSGPI 317
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 5e-24
Identities = 65/394 (16%), Positives = 122/394 (30%), Gaps = 73/394 (18%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFS 127
+ + L TLP D + + L + N+L + L+ L++ N +
Sbjct: 43 AVLNVGESGLT-TLP-DCL--PAHITTLVIPDNNL-TSLPALPPE---LRTLEVSGNQLT 94
Query: 128 GSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKL 186
S P L EL L+ + + L L + N T P
Sbjct: 95 -SLPVLPPGLLELSIFSNPLTHLPALP--------SGLCKLWIFGNQL--TSLPVL---P 140
Query: 187 NKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQ 246
L L +++ + +P L L +N ++ +P L +L + +NQ
Sbjct: 141 PGLQELSVSDNQLA-SLPALPSELC---KLWAYNNQLT-SLPMLPSGLQEL---SVSDNQ 192
Query: 247 LSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFK 306
L+ LP L L ++ L + L L + N+ + +P +
Sbjct: 193 LA-SLPTLPSELYKLWAYNNRLTSLPA------LPSGLKELIVSGNRLT-SLPVLPSE-- 242
Query: 307 KLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKF 366
L L + N+LT +LP + V N LT
Sbjct: 243 -LKELMVSGNRLT-SLPMLPSGLLS---LSVYRNQLT----------------------- 274
Query: 367 TGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAK 426
+P + + + + N L + + + + + +
Sbjct: 275 --RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETR 332
Query: 427 ALNLLFAEYNRLSGELPEEISKATSLVVIKLNNN 460
AL+L A++ L E + A + +N
Sbjct: 333 ALHLAAADW--LVPAREGEPAPADRWHMFGQEDN 364
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 85.7 bits (212), Expect = 5e-18
Identities = 55/283 (19%), Positives = 92/283 (32%), Gaps = 36/283 (12%)
Query: 24 ELQILLNLKTSLKDSKSSIFSSWVSNNHFCNFTGITCNSDSSFVQEIELSNRNLKGTLPF 83
EL I N T L S + W+ N + + +QE+ +S+ L +LP
Sbjct: 105 ELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPG-----LQELSVSDNQLA-SLP- 157
Query: 84 DSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLY 143
+L L + SL S LQ L + +N + S L +L
Sbjct: 158 ALPSELCKLWAYNNQLTSLPMLPSG-------LQELSVSDNQLASLPTLPSELYKLWAYN 210
Query: 144 LNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQI 203
L+ + L L V N T P ++L L ++ + +
Sbjct: 211 NRLTSLPA--------LPSGLKELIVSGNRL--TSLPVL---PSELKELMVSGNRLT-SL 256
Query: 204 PVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLAN 263
P+ L L + N ++ +P + +L + L N LS + LR +T+
Sbjct: 257 PMLPSGLLSL---SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPG 312
Query: 264 FD----ASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAEL 302
+ E R L L + PA+
Sbjct: 313 YSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADR 355
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 1e-10
Identities = 48/213 (22%), Positives = 81/213 (38%), Gaps = 31/213 (14%)
Query: 258 LTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNK 317
A + + L L + ++ TL + N + +PA + L L + N+
Sbjct: 39 NNGNAVLNVGESGLT-TLPD-CLPAHITTLVIPDNNLT-SLPALPPE---LRTLEVSGNQ 92
Query: 318 LTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANC 377
LT +LP E L +P +CK L + N+ T +P
Sbjct: 93 LT-SLPVLPPGLLELSIFSNPLTHLP-ALPSGLCK------LWIFGNQLT-SLPVLPPG- 142
Query: 378 LTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNR 437
LQ VS+N L ++PA L ++ + NQ+ + + L++ N+
Sbjct: 143 --LQELSVSDNQLA-SLPALPSELCKLWAYN---NQLTS-LPMLPSGLQELSV---SDNQ 192
Query: 438 LSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470
L+ LP S+ L NN+LT +PA
Sbjct: 193 LA-SLPTLPSELYKL---WAYNNRLT-SLPALP 220
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 2e-25
Identities = 48/260 (18%), Positives = 90/260 (34%), Gaps = 16/260 (6%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFS 127
+ ++++ +LK + +L L N L + DL KL+ L+L +NV
Sbjct: 13 KIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71
Query: 128 GSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLN 187
++ SL+ L+ L LN + L ++ +L +N +
Sbjct: 72 -ETLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNISRVSCS----RGQ 120
Query: 188 KLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISG-EIPSEIGNLVKLWRLELYNNQ 246
+YL N I ++ G + + L+L N I + L L L N
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180
Query: 247 LSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFK 306
+ + + L D S+N L E + + + L N+ + L +
Sbjct: 181 IY-DVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237
Query: 307 KLVNLSLYTNKLTGALPQEL 326
L + L N ++
Sbjct: 238 NLEHFDLRGNGFHCGTLRDF 257
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 1e-23
Identities = 45/268 (16%), Positives = 98/268 (36%), Gaps = 17/268 (6%)
Query: 84 DSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSG-SFPEISSLNELQHL 142
+ + +SL ++ + ++ LDL N S S +++ +L+ L
Sbjct: 4 EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63
Query: 143 YLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQ 202
L+ + L +++ L +L + +N +++ + L+ N +I +
Sbjct: 64 NLSSNVLYETLD---LESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNI-SR 113
Query: 203 IPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSG-KLPVGLRNLTNL 261
+ N+ L++N I+ + G ++ L+L N++ + L
Sbjct: 114 VSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171
Query: 262 ANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGA 321
+ + NF+ D+ L TL L N+ + + E + +SL NKL
Sbjct: 172 EHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-L 228
Query: 322 LPQELGSWAEFDFIDVSENLLTGPIPPD 349
+ + L + D+ N D
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRD 256
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 3e-22
Identities = 48/278 (17%), Positives = 101/278 (36%), Gaps = 36/278 (12%)
Query: 186 LNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNN 245
N+ +T+ S+ + + + L+LS N +S +++ KL L L +N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 246 QLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKF 305
L L L +L+ L D + N + E+ ++ TL N S V
Sbjct: 69 VLYETLD--LESLSTLRTLDLNNN----YVQELLVGPSIETLHAANNNIS-RVSCSR--G 119
Query: 306 KKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNK 365
+ N+ L NK+T + G + ++D+ N +
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID---------------------- 157
Query: 366 FTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENA 425
T A+ TL+ + N + V + ++ +D++ N++ + + ++A
Sbjct: 158 -TVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSA 213
Query: 426 KALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463
+ + N+L + + + + +L L N
Sbjct: 214 AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 2e-20
Identities = 42/312 (13%), Positives = 98/312 (31%), Gaps = 17/312 (5%)
Query: 160 NMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELS 219
N V D+ + L L+ + ++ T+L L LS
Sbjct: 8 NGNRYKIEKVTDSSLKQAL-ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66
Query: 220 DNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVR 279
N + ++ +L L L+L NN + L ++ A+ N + +S
Sbjct: 67 SNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSC-S 117
Query: 280 FLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTG-ALPQELGSWAEFDFIDVS 338
+ L N+ + + G ++ L L N++ + S + +++
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177
Query: 339 ENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGI 398
N + + + ++ L + NK + + + + + NN L + +
Sbjct: 178 YNFIYD-VKGQVVFA-KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKAL 233
Query: 399 WGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLN 458
+ D+ N T +K + + +L + + ++ +
Sbjct: 234 RFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHY 291
Query: 459 NNQLTGKIPASI 470
+PA
Sbjct: 292 GAYCCEDLPAPF 303
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 1e-12
Identities = 41/246 (16%), Positives = 81/246 (32%), Gaps = 16/246 (6%)
Query: 227 IPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEG-DLSEVRFLTNLV 285
I N + ++ ++ L L ++ N+ D S N L +++ T L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 286 TLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGP 345
L L N +L L L L N + EL + + + N ++
Sbjct: 62 LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR- 113
Query: 346 IPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKG-TVPAGIWGLPEV 404
+ + +++ + NK T +Q + N + +
Sbjct: 114 VSCSRGQG--KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171
Query: 405 NIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTG 464
+++ N I + + L L N+L+ + E A + I L NN+L
Sbjct: 172 EHLNLQYNFIYD-VKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227
Query: 465 KIPASI 470
I ++
Sbjct: 228 LIEKAL 233
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 4e-22
Identities = 78/461 (16%), Positives = 145/461 (31%), Gaps = 65/461 (14%)
Query: 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGN 123
+ ++LS L+ L S L L L + + L L L
Sbjct: 27 PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85
Query: 124 NVFSGSFPEI-SSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQ 182
N S L+ LQ L + + + + +G++ L L+V N P+
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEY 144
Query: 183 VVKLNKLNWLYLTNCSIDGQIPVEIGNLTEL----INLELSDNNISGEIPSEIGNLVKLW 238
L L L L++ I ++ L ++ ++L+LS N ++ I ++L
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLH 203
Query: 239 RLELYNNQLSGKLPVG-LRNLTNL-------ANFDASTNFLEGDLSEVRFLTNLVTLQLF 290
+L L NN S + ++ L L F N + D S + L NL +
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263
Query: 291 KNQFSGEVPAELGKFKKLVNL---SLYTNKLTGALPQE---------------------- 325
+ + F L N+ SL + +
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK 323
Query: 326 -------------LGSWAEFD------FIDVSENLLTGPIPPDMCKRGTM--RDLLMLQN 364
G+ F+D+S N L+ GT + L + N
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383
Query: 365 KFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIW-GLPEVNIIDIALNQIEGPITKDIE 423
+ + + L+ +++LK ++ L + +DI+
Sbjct: 384 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442
Query: 424 NAKALNLLFAEYNRLSGELPEEI-SKATSLVVIKLNNNQLT 463
+L +L N +I ++ +L + L+ QL
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 2e-19
Identities = 75/432 (17%), Positives = 147/432 (34%), Gaps = 41/432 (9%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSL-YGEISKDLNNCVKLQYLDLGNNVF 126
Q++ NL +L I L+ L +L++ N + ++ + +N L++LDL +N
Sbjct: 103 QKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Query: 127 SGSFPE-ISSLNELQHLY--LNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQV 183
+ + L+++ L L+LS F L L++ +N +
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 221
Query: 184 VKLNKLNWLYLTNCSIDGQ---IPVEIGNLTELINLELSDNNISG------EIPSEIGNL 234
L L L + + L L NL + + ++ +I L
Sbjct: 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL 281
Query: 235 VKLWRLELYNNQLSGKLPV----GLRNLT---------------NLANFDASTNFLEGDL 275
+ L + + G ++L +L ++N
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 341
Query: 276 SEVRFLTNLVTLQLFKNQ--FSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFD 333
SEV L +L L L +N F G L L L N + + + +
Sbjct: 342 SEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE 399
Query: 334 FIDVSENLLTGPIPPDMCKR-GTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKG 392
+D + L + + L + + +L+ +++ NS +
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459
Query: 393 TVPAGIW-GLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEI-SKAT 450
I+ L + +D++ Q+E + +L +L N+L +P+ I + T
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLT 518
Query: 451 SLVVIKLNNNQL 462
SL I L+ N
Sbjct: 519 SLQKIWLHTNPW 530
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 4e-19
Identities = 52/242 (21%), Positives = 85/242 (35%), Gaps = 13/242 (5%)
Query: 46 WVSNNHFCNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLY-- 103
+ N F F + S ++ + ++ L +L L L N L
Sbjct: 310 ELVNCKFGQFPTLKLKS----LKRLTFTSNKGGNAFSEVD---LPSLEFLDLSRNGLSFK 362
Query: 104 GEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTN 163
G S+ L+YLDL N L +L+HL S + + ++ N
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422
Query: 164 LVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEI-GNLTELINLELSDNN 222
L+ L + F L+ L L + S +I L L L+LS
Sbjct: 423 LIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481
Query: 223 ISGEIPSEIGNLVKLWRLELYNNQLSGKLPVG-LRNLTNLANFDASTNFLEGDLSEVRFL 281
+ P+ +L L L + +NQL +P G LT+L TN + + +L
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540
Query: 282 TN 283
+
Sbjct: 541 SR 542
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 2e-15
Identities = 56/295 (18%), Positives = 101/295 (34%), Gaps = 28/295 (9%)
Query: 12 LCLPFFTCINSDELQILLNLKTSLKDSKSSIFSSWVSNNHFCNFTGITCNSDSSFVQEIE 71
LC L L+ L + +++ S + + + S + Q +E
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV---TIERVKDFSYNFGWQHLE 310
Query: 72 LSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNN------V 125
L N G P L++L +L+ N S + L++LDL N
Sbjct: 311 LVN-CKFGQFPTLK---LKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGC 364
Query: 126 FSGSFPEISSLNELQHLYLN---LSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQ 182
S S L++L L+ + S F + L L +
Sbjct: 365 CSQSD---FGTTSLKYLDLSFNGVITMSSNFL-----GLEQLEHLDFQHSNLKQMSEFSV 416
Query: 183 VVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEI-GNLVKLWRLE 241
+ L L +L +++ L+ L L+++ N+ +I L L L+
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476
Query: 242 LYNNQLSGKLPVGLRNLTNLANFDASTNFLEG-DLSEVRFLTNLVTLQLFKNQFS 295
L QL P +L++L + ++N L+ LT+L + L N +
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 1e-13
Identities = 56/347 (16%), Positives = 97/347 (27%), Gaps = 37/347 (10%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSL------GFNSLYGEISKDLNNCVKLQYLDL 121
++ L N + I L L L +L L L +
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262
Query: 122 GNNVFSGSFPEISS----LNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPT 177
+I L + L V + +L ++ F
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT- 321
Query: 178 PFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNIS--GEIPSEIGNLV 235
+KL L L T+ +L L L+LS N +S G
Sbjct: 322 ------LKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373
Query: 236 KLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEG--DLSEVRFLTNLVTLQLFKNQ 293
L L+L N + + L L + D + L+ + S L NL+ L +
Sbjct: 374 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 294 FSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFD------FIDVSENLLTGPIP 347
L L + N ++ F F+D+S+ L +
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-----FTELRNLTFLDLSQCQLEQ-LS 486
Query: 348 PDMCKRGT-MRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGT 393
P + ++ L M N+ + +LQ+ + N +
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 2e-21
Identities = 69/401 (17%), Positives = 128/401 (31%), Gaps = 70/401 (17%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISK---------------DLNN 112
+ + S +L LP + L++L + +L +L N
Sbjct: 94 ESLVASCNSLT-ELP-ELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQN 151
Query: 113 CVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDN 172
L+ +D+ NN SL + L L N+ L ++ +N
Sbjct: 152 SSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP------ELQNLPFLTAIYADNN 205
Query: 173 PFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIG 232
PD L + N + + E+ NL L + +N + +P
Sbjct: 206 SL--KKLPDL---PLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPP 257
Query: 233 NLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFL----------- 281
+L L + +N L+ LP ++LT L + + L + +L
Sbjct: 258 SLEA---LNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLC 313
Query: 282 ---TNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVS 338
+L L + N+ E+PA +L L N L +P+ + + + V
Sbjct: 314 DLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQNLKQ---LHVE 365
Query: 339 ENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGI 398
N L P L + + E+P N L++ V N L+ P
Sbjct: 366 YNPLRE-FPDIPESVED----LRMNSHLA-EVPELPQN---LKQLHVETNPLR-EFPDIP 415
Query: 399 WGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLS 439
+ ++ + ++ P E L E++
Sbjct: 416 ESVEDLRMNS---ERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 4e-17
Identities = 60/336 (17%), Positives = 107/336 (31%), Gaps = 65/336 (19%)
Query: 177 TPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTE-------------LINLELSDNNI 223
T P + + Y + P G E LEL++ +
Sbjct: 24 TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL 83
Query: 224 SGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEG---------- 273
S +P +L L N L+ +LP ++L +L + + L
Sbjct: 84 S-SLPELPPHLESLV---ASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGV 138
Query: 274 ------DLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELG 327
L E++ + L + + N ++P L ++ N+L LP EL
Sbjct: 139 SNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQLE-ELP-ELQ 192
Query: 328 SWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSN 387
+ I N L +P + ++ N N L N
Sbjct: 193 NLPFLTAIYADNNSLKK-LPDLPLS---LESIVAGNNILE--ELPELQNLPFLTTIYADN 246
Query: 388 NSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELP---- 443
N LK T+P L +N+ D L + + ++ L++ ++ LS P
Sbjct: 247 NLLK-TLPDLPPSLEALNVRDNYLTD----LPELPQSLTFLDVSENIFSGLSELPPNLYY 301
Query: 444 ---------EEISKATSLVVIKLNNNQLTGKIPASI 470
SL + ++NN+L ++PA
Sbjct: 302 LNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP 336
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 6e-13
Identities = 60/316 (18%), Positives = 101/316 (31%), Gaps = 58/316 (18%)
Query: 184 VKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLV-------- 235
V L + ++ ++PVE N+ + + P G
Sbjct: 8 VSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66
Query: 236 -----KLWRLELYNNQLSG-------------------KLPVGLRNLTNLANFDASTNFL 271
+ LEL N LS +LP ++L +L + + L
Sbjct: 67 DCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKAL 126
Query: 272 EGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAE 331
L L + NQ ++P EL L + + N L LP S
Sbjct: 127 SD------LPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPDLPPSLEF 177
Query: 332 FDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLK 391
I N L P++ + + N ++P L+L+ NN L
Sbjct: 178 ---IAAGNNQLE--ELPELQNLPFLTAIYADNNSLK-KLP---DLPLSLESIVAGNNIL- 227
Query: 392 GTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATS 451
+ LP + I N ++ + + +ALN+ N L+ +LPE T
Sbjct: 228 -EELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVR---DNYLT-DLPELPQSLTF 281
Query: 452 LVVIKLNNNQLTGKIP 467
L V + + L+ P
Sbjct: 282 LDVSENIFSGLSELPP 297
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 33/225 (14%), Positives = 71/225 (31%), Gaps = 32/225 (14%)
Query: 24 ELQILLNLKTSLKDSKSSIFSSWVSNNHFCNFTGITCNSDSSFVQEIELSNRNLKGTLPF 83
L + N T L + S+ VS N F + + N + + S+ ++ +L
Sbjct: 261 ALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN-----LYYLNASSNEIR-SLCD 314
Query: 84 DSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLY 143
+L +L++ N L E+ L+ L N + +L +L Y
Sbjct: 315 ----LPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLAEVPELPQNLKQLHVEY 366
Query: 144 LNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQI 203
L F + ++ L + + P+ L L++ + +
Sbjct: 367 NPLREFPDI--------PESVEDLRMNSHL---AEVPEL---PQNLKQLHVETNPLR-EF 411
Query: 204 PVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLS 248
P ++ +L ++ + KL ++
Sbjct: 412 PDIPESVE---DLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 96.0 bits (239), Expect = 3e-21
Identities = 83/450 (18%), Positives = 153/450 (34%), Gaps = 40/450 (8%)
Query: 51 HFCNFTGITCNSDSSFV--QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISK 108
F +T +S Q +EL ++ T+ ++ L L L LG + +Y
Sbjct: 32 SFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91
Query: 109 DLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHL-YLNLSG--FSGVFPWMSLGNMTNLV 165
L L L S + + L+ L L+LS ++ S G + +L
Sbjct: 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151
Query: 166 SLSVGDNPFDPTPFPD-QVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELIN------LEL 218
S+ N + + ++ L++ L S+ ++ V+ G L++
Sbjct: 152 SIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDV 211
Query: 219 SDNNISGEIPSEIGNLV------------KLWRLELYNNQLSGKLPVGLRNL--TNLANF 264
S N + +I N + + + + L +++ +
Sbjct: 212 SGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL 271
Query: 265 DASTNFLEGDLSEV-RFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALP 323
D S F+ S V L +L L L N+ + L L+L N L
Sbjct: 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331
Query: 324 QELGSWAEFDFIDVSENLLTGPIPPDMCKR-GTMRDLLMLQNKFTGEIPATYANCLTLQR 382
+ +ID+ +N + I K ++ L + N T T ++
Sbjct: 332 SNFYGLPKVAYIDLQKNHIAI-IQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPD 385
Query: 383 FRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEG-PITKDIENAKALNLLFAEYNRLSGE 441
+S N L T+P N+I ++ N++E I + L +L NR S
Sbjct: 386 IFLSGNKLV-TLPKINLTA---NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441
Query: 442 LPEEI-SKATSLVVIKLNNNQLTGKIPASI 470
++ S+ SL + L N L +
Sbjct: 442 SGDQTPSENPSLEQLFLGENMLQLAWETEL 471
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 6e-17
Identities = 65/411 (15%), Positives = 126/411 (30%), Gaps = 42/411 (10%)
Query: 59 TCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQY 118
+C+ D NL +P L +L L FN + + +LQ
Sbjct: 1 SCSFDGRIA---FYRFCNLT-QVPQV----LNTTERLLLSFNYIRTVTASSFPFLEQLQL 52
Query: 119 LDLGNNVFSGSFPE--ISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDP 176
L+LG+ + + +L L+ L L S + + +L L +
Sbjct: 53 LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSD 111
Query: 177 TPFPDQVVK-LNKLNWLYLTNCSIDG-QIPVEIGNLTELINLELSDNNISGEIPSEIGNL 234
D + L L L L+ I + G L L +++ S N I E+ L
Sbjct: 112 AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171
Query: 235 --VKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKN 292
L L N L ++ V N + D+S + + F N
Sbjct: 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFR---NMVLEILDVSGNGW--TVDITGNFSN 226
Query: 293 QFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCK 352
S L ++ + + D +N G
Sbjct: 227 AISKSQAFSLILAHHIMGAGFGFHNIK----------------DPDQNTFAG------LA 264
Query: 353 RGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALN 412
R ++R L + + L+ ++ N + +GL + +++++ N
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324
Query: 413 QIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463
+ + + + + + N ++ + L + L +N LT
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 80.6 bits (199), Expect = 3e-16
Identities = 76/449 (16%), Positives = 146/449 (32%), Gaps = 71/449 (15%)
Query: 47 VSNNHFCNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALH--KLSLGFNSLYG 104
+S N + + ++ I+ S+ + + + LQ SL NSLY
Sbjct: 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYS 188
Query: 105 EISKDLNNC------VKLQYLDLGNNVFS-------------GSFPEISSLNELQHLYLN 145
+S D C + L+ LD+ N ++ + + +
Sbjct: 189 RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248
Query: 146 LSGFSGVFPWMSLG-NMTNLVSLSVGDNPF---DPTPFPDQVVKLNKLNWLYLTNCSIDG 201
G +++ L + + F L L L L I+
Sbjct: 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET----LKDLKVLNLAYNKINK 304
Query: 202 QIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNL 261
L L L LS N + S L K+ ++L N ++ + L L
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL 364
Query: 262 ANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGA 321
D N L+ + F+ ++ + L N+ L ++L N +
Sbjct: 365 QTLDLRDN----ALTTIHFIPSIPDIFLSGNKLV-----------TLPKINLTANLI--- 406
Query: 322 LPQELGSWAEFDFIDVSENLLTG-PIPPDMCKRGTMRDLLMLQNKFTG-EIPATYANCLT 379
+SEN L I + + ++ L++ QN+F+ T + +
Sbjct: 407 --------------HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPS 452
Query: 380 LQRFRVSNNSLKGTVPAGI-----WGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAE 434
L++ + N L+ + GL + ++ + N + + AL L
Sbjct: 453 LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN 512
Query: 435 YNRLSGELPEEISKATSLVVIKLNNNQLT 463
NRL+ L +L ++ ++ NQL
Sbjct: 513 SNRLT-VLSHN-DLPANLEILDISRNQLL 539
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 1e-20
Identities = 60/338 (17%), Positives = 122/338 (36%), Gaps = 28/338 (8%)
Query: 132 EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNW 191
+ +++++ F + + + N ++ ++ P + ++
Sbjct: 16 NLQYDCVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLP-AALLDSFRQVEL 73
Query: 192 LYLTNCSIDGQIPVEI-GNLTELINLELSDNNISGEIPSEI-GNLVKLWRLELYNNQLSG 249
L L + I+ +I + L + N I +P + N+ L L L N LS
Sbjct: 74 LNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS- 130
Query: 250 KLPVGL-RNLTNLANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQFSGEVPAELGKFK 306
LP G+ N L S N LE + + F T+L LQL N+ + V L
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIP 186
Query: 307 KLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKF 366
L + ++ N L+ L + +D S N + + + + L + N
Sbjct: 187 SLFHANVSYNLLS-----TLAIPIAVEELDASHNSINV-VRGPVNVE--LTILKLQHNNL 238
Query: 367 TGEIPATYANCLTLQRFRVSNNSLKGTVPAGIW-GLPEVNIIDIALNQIEGPITKDIENA 425
T + N L +S N L+ + + + + + I+ N++ + +
Sbjct: 239 T-DTAW-LLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPI 294
Query: 426 KALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463
L +L +N L + + L + L++N +
Sbjct: 295 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 9e-16
Identities = 59/335 (17%), Positives = 111/335 (33%), Gaps = 41/335 (12%)
Query: 15 PFFTCINSDELQILLNLKTSLKDSKSSIFSSWVSNN---------HFCNFTGITCNSDSS 65
P + CI+S+ + + ++ + + S
Sbjct: 8 PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS 67
Query: 66 F--VQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGN 123
F V+ + L++ ++ + + + KL +GFN++ N L L L
Sbjct: 68 FRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126
Query: 124 NVFS----GSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNP---FDP 176
N S G F + +L L ++ + + + T+L +L + N D
Sbjct: 127 NDLSSLPRGIF---HNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSNRLTHVDL 182
Query: 177 TPFPD------------QVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNIS 224
+ P + + L ++ SI+ V EL L+L NN++
Sbjct: 183 SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV---VRGPVNVELTILKLQHNNLT 239
Query: 225 GEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNL 284
+ + N L ++L N+L + + L S N L + + L
Sbjct: 240 -DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTL 297
Query: 285 VTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLT 319
L L N V +F +L NL L N +
Sbjct: 298 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 45/239 (18%), Positives = 87/239 (36%), Gaps = 27/239 (11%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFS 127
Q ++LS+ L + + +L ++ +N L L + ++ LD +N +
Sbjct: 168 QNLQLSSNRLT-HVDLS---LIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN 218
Query: 128 GSFPEISSLNELQHLYL---NLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVV 184
EL L L NL+ + L N LV + + N + V
Sbjct: 219 -VVRG-PVNVELTILKLQHNNLTDTA------WLLNYPGLVEVDLSYNELEKIM-YHPFV 269
Query: 185 KLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYN 244
K+ +L LY++N + + + + L L+LS N++ + +L L L +
Sbjct: 270 KMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH 327
Query: 245 NQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELG 303
N + L + L N S N + + S N+ + ++ +L
Sbjct: 328 NSIV-TLKLS--THHTLKNLTLSHNDWDCN-SLRALFRNVARPAVDDADQHCKIDYQLE 382
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 4e-12
Identities = 48/315 (15%), Positives = 102/315 (32%), Gaps = 38/315 (12%)
Query: 180 PDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEI-GNLVKLW 238
+ +++ + D E L + ++ + ++P+ + + ++
Sbjct: 14 DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVE 72
Query: 239 RLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQFSG 296
L L + Q+ + N + L F + L L L +N S
Sbjct: 73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS- 130
Query: 297 EVPAEL-GKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGT 355
+P + KL LS+ N L + + +S N LT + +
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPS-- 187
Query: 356 MRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGI----------------- 398
+ + N + T A + ++ S+NS+ V +
Sbjct: 188 LFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVNVELTILKLQHNNLTDT 241
Query: 399 ---WGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVI 455
P + +D++ N++E + + L L+ NRL L +L V+
Sbjct: 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVL 300
Query: 456 KLNNNQLTGKIPASI 470
L++N L + +
Sbjct: 301 DLSHNHLL-HVERNQ 314
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 5e-08
Identities = 38/264 (14%), Positives = 80/264 (30%), Gaps = 40/264 (15%)
Query: 203 IPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLA 262
I + ++ + E L + N+ + L + +
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72
Query: 263 NFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTG 320
+ + +E ++ F + L + N P L L L N L+
Sbjct: 73 LLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131
Query: 321 ALPQELGSWAEFDFIDVSENLLTGPIPPDMCKR-GTMRDLLMLQNKFTGEIPATYANCLT 379
+P + + L M N T+ +
Sbjct: 132 -------------------------LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 166
Query: 380 LQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLS 439
LQ ++S+N L V +P + +++ N + + A+ L A +N ++
Sbjct: 167 LQNLQLSSNRLT-HVDLS--LIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN 218
Query: 440 GELPEEISKATSLVVIKLNNNQLT 463
+ ++ L ++KL +N LT
Sbjct: 219 -VVRGPVN--VELTILKLQHNNLT 239
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 1e-19
Identities = 66/422 (15%), Positives = 137/422 (32%), Gaps = 36/422 (8%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFS 127
Q + L + + T+ D+ L +L L L N L S L+YL+L N +
Sbjct: 53 QVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111
Query: 128 --GSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVK 185
G +L LQ L + + +T+L L + +
Sbjct: 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ-SQSLKS 170
Query: 186 LNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNN 245
+ ++ L L + + L+ + LEL D N++ S + ++
Sbjct: 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230
Query: 246 QLSGKLPVGLRNLTNLANFDASTNFLE-----------------GDLSEVRFL--TNLVT 286
+ S L L + + +E +SE+ + +
Sbjct: 231 RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRR 290
Query: 287 LQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPI 346
L + + ++ +K+ +++ +K+ +F+D+SENL+
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 350
Query: 347 PPDMCKRGTMRDLLML---QNKFT--GEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGL 401
+ +G L L QN + L +S N+ +P
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP 409
Query: 402 PEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQ 461
++ ++++ I + I + L +L N L + L + ++ N+
Sbjct: 410 EKMRFLNLSSTGIRV-VKTCIP--QTLEVLDVSNNNLD-SFSLFL---PRLQELYISRNK 462
Query: 462 LT 463
L
Sbjct: 463 LK 464
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 1e-19
Identities = 74/427 (17%), Positives = 152/427 (35%), Gaps = 34/427 (7%)
Query: 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGN 123
++ ++ ++LS + + + L L L + + + L++LDL +
Sbjct: 25 TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83
Query: 124 NVFSGSFPE--ISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPD 181
N S S L+ L++L L + + + N+TNL +L +G+
Sbjct: 84 NHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142
Query: 182 QVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLE 241
L LN L + S+ + ++ ++ +L L + + + L + LE
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202
Query: 242 LYNNQLSG---------KLPVGLRNLTNLANFDASTNF--------LEGDLSEVRFLTNL 284
L + L+ ++ ++ L + +F +LSEV F
Sbjct: 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262
Query: 285 VTLQLFKNQFSGEVPAELGKFK--KLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLL 342
+ N +V +ELGK + + L + L L + I V + +
Sbjct: 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322
Query: 343 TGPIPPDMCKR-GTMRDLLMLQNKFTGEI---PATYANCLTLQRFRVSNNSLK--GTVPA 396
+P + ++ L + +N E A +LQ +S N L+
Sbjct: 323 FL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381
Query: 397 GIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIK 456
+ L + +DI+ N P+ + + + L + + I +L V+
Sbjct: 382 ILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLD 437
Query: 457 LNNNQLT 463
++NN L
Sbjct: 438 VSNNNLD 444
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 5e-18
Identities = 76/436 (17%), Positives = 149/436 (34%), Gaps = 53/436 (12%)
Query: 48 SNNHFCNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEIS 107
N + + + + +Q + + N + L +L++L + SL S
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165
Query: 108 KDLNNCVKLQYLDLGNN----VFSGSFPEISSLNELQHLYLNLSGFS----GVFPWMSLG 159
+ L + + +L L + + +SS+ L+ NL+ F V S
Sbjct: 166 QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM 225
Query: 160 NMTNLVSLSVGDNPFDP-TPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLE- 217
+ D F+ +++L+++ + T + P E ++EL +E
Sbjct: 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET 285
Query: 218 -------LSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNF 270
+ + ++ + L K+ R+ + N+++ ++L +L D S N
Sbjct: 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL 345
Query: 271 LE----GDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQEL 326
+ + + +L TL L +N + L NL L
Sbjct: 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNL------------TSL 392
Query: 327 GSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVS 386
D+S N P+P MR L + + TL+ VS
Sbjct: 393 ---------DISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQ--TLEVLDVS 439
Query: 387 NNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEI 446
NN+L + LP + + I+ N+++ D L ++ N+L
Sbjct: 440 NNNLD-SFSL---FLPRLQELYISRNKLK--TLPDASLFPVLLVMKISRNQLKSVPDGIF 493
Query: 447 SKATSLVVIKLNNNQL 462
+ TSL I L+ N
Sbjct: 494 DRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 1e-13
Identities = 45/272 (16%), Positives = 88/272 (32%), Gaps = 42/272 (15%)
Query: 54 NFTGITCNSDSSFVQEIELS----NRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKD 109
N + S+ V+ + + + L+ + ++++ + ++
Sbjct: 270 NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSF 329
Query: 110 LNNCVKLQYLDLGNNVFS----GSFPEISSLNELQHLYL------NLSGFSGVFPWMSLG 159
+ L++LDL N+ + + LQ L L ++ +
Sbjct: 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL-----L 384
Query: 160 NMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEI------------ 207
+ NL SL + N F P PD K+ +L L++ I + I
Sbjct: 385 TLKNLTSLDISRNTF--HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNN 441
Query: 208 ------GNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNL 261
L L L +S N + +P L +++ NQL LT+L
Sbjct: 442 NLDSFSLFLPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSL 499
Query: 262 ANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQ 293
TN + + +L+ + K Q
Sbjct: 500 QKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 531
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 1e-08
Identities = 43/307 (14%), Positives = 92/307 (29%), Gaps = 47/307 (15%)
Query: 202 QIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSG------------ 249
IP + + +L+LS N I+ ++ L L L +++++
Sbjct: 19 SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76
Query: 250 -----------KLPVG-LRNLTNLANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQFS 295
L L++L + N + F LTNL TL++ +
Sbjct: 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136
Query: 296 GEVPAE-LGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRG 354
E+ L L + L Q L S + + + + +
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS 196
Query: 355 TMRDLLMLQNK--------FTGEIPATYANCLTLQRFRVSNNSLKG--TVPAGIWGLPEV 404
++R L + + ++ L + +++ S + I L EV
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256
Query: 405 NIIDIALNQIE---GPITKDIENAKALNLLFAEYNRLSG-----ELPEEISKATSLVVIK 456
D LN + + + + + + +L S + I
Sbjct: 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316
Query: 457 LNNNQLT 463
+ N+++
Sbjct: 317 VENSKVF 323
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 88.4 bits (219), Expect = 7e-19
Identities = 60/338 (17%), Positives = 121/338 (35%), Gaps = 28/338 (8%)
Query: 132 EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNW 191
+ +++++ V+ + N ++ ++ P + ++
Sbjct: 22 NLQYDCVFYDVHIDMQTQD-VYFGFEDITLNNQKIVTFKNSTMRKLP-AALLDSFRQVEL 79
Query: 192 LYLTNCSIDGQIPVEI-GNLTELINLELSDNNISGEIPSEI-GNLVKLWRLELYNNQLSG 249
L L + I+ +I + L + N I +P + N+ L L L N LS
Sbjct: 80 LNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS- 136
Query: 250 KLPVGL-RNLTNLANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQFSGEVPAELGKFK 306
LP G+ N L S N LE + + F T+L LQL N+ + V L
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIP 192
Query: 307 KLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKF 366
L + ++ N L+ L + +D S N + + + + L + N
Sbjct: 193 SLFHANVSYNLLS-----TLAIPIAVEELDASHNSINV-VRGPVNVE--LTILKLQHNNL 244
Query: 367 TGEIPATYANCLTLQRFRVSNNSLKGTVPAGIW-GLPEVNIIDIALNQIEGPITKDIENA 425
T + N L +S N L+ + + + + + I+ N++ + +
Sbjct: 245 T-DTAWL-LNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPI 300
Query: 426 KALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463
L +L +N L + + L + L++N +
Sbjct: 301 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 75.7 bits (186), Expect = 7e-15
Identities = 60/338 (17%), Positives = 113/338 (33%), Gaps = 47/338 (13%)
Query: 15 PFFTCINSDELQILLNLKTSLKDSKSSIFSSW------------VSNNHFCNFTGITCNS 62
P + CI+S+ + + ++ + N+ +
Sbjct: 14 PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS---TMRKLPAAL 70
Query: 63 DSSF--VQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLD 120
SF V+ + L++ ++ + + + KL +GFN++ N L L
Sbjct: 71 LDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129
Query: 121 LGNNVFS----GSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNP--- 173
L N S G F + +L L ++ + + + T+L +L + N
Sbjct: 130 LERNDLSSLPRGIF---HNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSNRLTH 185
Query: 174 FDPTPFPD------------QVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDN 221
D + P + + L ++ SI+ V EL L+L N
Sbjct: 186 VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV---VRGPVNVELTILKLQHN 242
Query: 222 NISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFL 281
N++ + + N L ++L N+L + + L S N L + +
Sbjct: 243 NLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPI 300
Query: 282 TNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLT 319
L L L N V +F +L NL L N +
Sbjct: 301 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 7e-11
Identities = 49/307 (15%), Positives = 101/307 (32%), Gaps = 35/307 (11%)
Query: 180 PDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEI-GNLVKLW 238
+ +++ + D E L + ++ + ++P+ + + ++
Sbjct: 20 DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVE 78
Query: 239 RLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQFSG 296
L L + Q+ + N + L F + L L L +N S
Sbjct: 79 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS- 136
Query: 297 EVPAEL-GKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGT 355
+P + KL LS+ N L + + +S N LT + +
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPS-- 193
Query: 356 MRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKG-------------------TVPA 396
+ + N + T A + ++ S+NS+ T A
Sbjct: 194 LFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA 248
Query: 397 GIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIK 456
+ P + +D++ N++E + + L L+ NRL L +L V+
Sbjct: 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLD 307
Query: 457 LNNNQLT 463
L++N L
Sbjct: 308 LSHNHLL 314
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 9e-08
Identities = 39/279 (13%), Positives = 84/279 (30%), Gaps = 38/279 (13%)
Query: 187 NKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQ 246
+ + I + ++ + E L + N+
Sbjct: 3 GQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST 62
Query: 247 LSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQFSGEVPAELGK 304
+ L + + + + +E ++ F + L + N P
Sbjct: 63 MRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121
Query: 305 FKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQN 364
L L L N L+ + + + +S N L I D
Sbjct: 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDD--------------- 165
Query: 365 KFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIEN 424
T+ +LQ ++S+N L V +P + +++ N + +
Sbjct: 166 --------TFQATTSLQNLQLSSNRLT-HVDLS--LIPSLFHANVSYNLL-----STLAI 209
Query: 425 AKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463
A+ L A +N ++ + ++ L ++KL +N LT
Sbjct: 210 PIAVEELDASHNSIN-VVRGPVN--VELTILKLQHNNLT 245
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 4e-07
Identities = 34/229 (14%), Positives = 77/229 (33%), Gaps = 13/229 (5%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFS 127
E++LS L+ + + ++Q L +L + N L ++ L+ LDL +N
Sbjct: 257 VEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL 314
Query: 128 GSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLN 187
+ L++LYL+ + + L L +L++ N +D +
Sbjct: 315 HVERNQPQFDRLENLYLDHNSIVTL----KLSTHHTLKNLTLSHNDWDCNSLRALFRNVA 370
Query: 188 KLNWLYL-TNCSIDGQIPVEI------GNLTELINLELSDNNISGEIPSEIGNLVKLWRL 240
+ +C ID Q+ + + + ++ ++ ++ G +
Sbjct: 371 RPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTI 430
Query: 241 ELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQL 289
+ G L +A N L ++ ++ L
Sbjct: 431 NSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLL 479
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 87.9 bits (217), Expect = 1e-18
Identities = 57/232 (24%), Positives = 91/232 (39%), Gaps = 18/232 (7%)
Query: 88 QLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLS 147
K +L S+ ++ N + + N+ S I L + L+LN +
Sbjct: 19 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLNGN 75
Query: 148 GFSGVFPWMSLGNMTNLVSLSVGDNPF-DPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVE 206
+ + P L N+ NL L + +N D + D L KL L L + I I
Sbjct: 76 KLTDIKP---LTNLKNLGWLFLDENKIKDLSSLKD----LKKLKSLSLEHNGIS-DING- 126
Query: 207 IGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDA 266
+ +L +L +L L +N I+ + + L KL L L +NQ+S + L LT L N
Sbjct: 127 LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYL 182
Query: 267 STNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKL 318
S N + DL + L NL L+LF + + + L
Sbjct: 183 SKNHIS-DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 84.0 bits (207), Expect = 2e-17
Identities = 52/239 (21%), Positives = 87/239 (36%), Gaps = 18/239 (7%)
Query: 110 LNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSV 169
+ + +L + + LN + + N S V + + N+ L +
Sbjct: 17 DDAFAETIKDNLKKKSVT-DAVTQNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFL 72
Query: 170 GDNP-FDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIP 228
N D P L L WL+L I + + +L +L +L L N IS +I
Sbjct: 73 NGNKLTDIKPLT----NLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGIS-DIN 125
Query: 229 SEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQ 288
+ +L +L L L NN+++ L LT L N + D+ + LT L L
Sbjct: 126 G-LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLY 181
Query: 289 LFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIP 347
L KN S L K L L L++ + + + + ++ L P
Sbjct: 182 LSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 67.8 bits (165), Expect = 2e-12
Identities = 58/258 (22%), Positives = 97/258 (37%), Gaps = 21/258 (8%)
Query: 46 WVSNNHFCNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGE 105
+N+ + GI + V ++ L+ L + L+ L L L N + +
Sbjct: 49 IANNSDIKSVQGIQYLPN---VTKLFLNGNKLTD---IKPLTNLKNLGWLFLDENKI-KD 101
Query: 106 ISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLV 165
+S L + KL+ L L +N S + L +L+ LYL + + + L +T L
Sbjct: 102 LS-SLKDLKKLKSLSLEHNGIS-DINGLVHLPQLESLYLGNNKITDITV---LSRLTKLD 156
Query: 166 SLSVGDNPF-DPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNIS 224
+LS+ DN D P L KL LYL+ I + + L L LEL
Sbjct: 157 TLSLEDNQISDIVPL----AGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQECL 210
Query: 225 GEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNL 284
+ + NLV ++ + L P + + + + + E
Sbjct: 211 NKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQP 268
Query: 285 VTLQLFKNQFSGEVPAEL 302
VT+ K +F G V L
Sbjct: 269 VTIGKAKARFHGRVTQPL 286
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 3e-04
Identities = 39/254 (15%), Positives = 83/254 (32%), Gaps = 66/254 (25%)
Query: 210 LTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTN 269
+ E I I +I + + L ++ V L ++ A+ +
Sbjct: 1 MGETI---TVSTPIK-QI-FPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNS 53
Query: 270 FLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSW 329
++ + +++L N+ L L NKLT P L +
Sbjct: 54 DIK-SVQGIQYLPNVTKL------------------------FLNGNKLTDIKP--LTNL 86
Query: 330 AEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNS 389
++ + EN + DL L + L+ + +N
Sbjct: 87 KNLGWLFLDENKIK--------------DLSSL------------KDLKKLKSLSLEHNG 120
Query: 390 LKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKA 449
+ + G+ LP++ + + N+I + L+ L E N++S ++
Sbjct: 121 I--SDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI--VPLAGL 174
Query: 450 TSLVVIKLNNNQLT 463
T L + L+ N ++
Sbjct: 175 TKLQNLYLSKNHIS 188
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 2e-18
Identities = 47/254 (18%), Positives = 91/254 (35%), Gaps = 21/254 (8%)
Query: 67 VQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVF 126
+I N+ T+ L + LS + + + L L+L +N
Sbjct: 21 AIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGV--TTIEGVQYLNNLIGLELKDNQI 75
Query: 127 SGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPF-DPTPFPDQVVK 185
+ + +L ++ L L+ + V + + ++ +L + D TP
Sbjct: 76 T-DLAPLKNLTKITELELSGNPLKNVSA---IAGLQSIKTLDLTSTQITDVTPLAG---- 127
Query: 186 LNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNN 245
L+ L LYL I P + LT L L + + +S + + NL KL L+ +N
Sbjct: 128 LSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDN 183
Query: 246 QLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKF 305
++S + L +L NL N + D+S + +NL + L + +
Sbjct: 184 KIS-DIS-PLASLPNLIEVHLKNNQIS-DVSPLANTSNLFIVTLTNQTITNQPVFYNNNL 240
Query: 306 KKLVNLSLYTNKLT 319
+ +
Sbjct: 241 VVPNVVKGPSGAPI 254
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 1e-15
Identities = 44/211 (20%), Positives = 81/211 (38%), Gaps = 18/211 (8%)
Query: 110 LNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSV 169
+ G + + + L+ + L +G + + + + NL+ L +
Sbjct: 15 DPALANAIKIAAGKSNVT-DTVTQADLDGITTLSAFGTGVTTIEG---VQYLNNLIGLEL 70
Query: 170 GDNPF-DPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIP 228
DN D P L K+ L L+ + + I L + L+L+ I+
Sbjct: 71 KDNQITDLAPLK----NLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITD--V 122
Query: 229 SEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQ 288
+ + L L L L NQ++ + L LTNL + DL+ + L+ L TL+
Sbjct: 123 TPLAGLSNLQVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNAQVS-DLTPLANLSKLTTLK 179
Query: 289 LFKNQFSGEVPAELGKFKKLVNLSLYTNKLT 319
N+ S P L L+ + L N+++
Sbjct: 180 ADDNKISDISP--LASLPNLIEVHLKNNQIS 208
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 1e-12
Identities = 51/279 (18%), Positives = 95/279 (34%), Gaps = 41/279 (14%)
Query: 185 KLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYN 244
L + ++ V +L + L ++ + L L LEL +
Sbjct: 17 ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72
Query: 245 NQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGK 304
NQ++ P L+NLT + + S N L+ ++S + L ++ TL L Q + P L
Sbjct: 73 NQITDLAP--LKNLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQITDVTP--LAG 127
Query: 305 FKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQN 364
L L L N++T P L ++ + ++ DL L
Sbjct: 128 LSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS--------------DLTPL-- 169
Query: 365 KFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIEN 424
AN L + +N + P + LP + + + NQI + N
Sbjct: 170 ----------ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD--VSPLAN 215
Query: 425 AKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463
L ++ ++ + + V+K +
Sbjct: 216 TSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI 254
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 3e-10
Identities = 45/216 (20%), Positives = 82/216 (37%), Gaps = 13/216 (6%)
Query: 83 FDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHL 142
+I LQ++ L L + +++ L LQ L L N + + ++ L LQ+L
Sbjct: 100 VSAIAGLQSIKTLDLTSTQI-TDVT-PLAGLSNLQVLYLDLNQIT-NISPLAGLTNLQYL 156
Query: 143 YLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQ 202
+ + S + P L N++ L +L DN L L ++L N I
Sbjct: 157 SIGNAQVSDLTP---LANLSKLTTLKADDNKISDISPLAS---LPNLIEVHLKNNQISDV 210
Query: 203 IPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLA 262
P + N + L + L++ I+ + NLV ++ + P + + A
Sbjct: 211 SP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI--APATISDNGTYA 266
Query: 263 NFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEV 298
+ + + N + VT + FSG V
Sbjct: 267 SPNLTWNLTSFINNVSYTFNQSVTFKNTTVPFSGTV 302
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 2e-18
Identities = 30/188 (15%), Positives = 68/188 (36%), Gaps = 13/188 (6%)
Query: 134 SSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPF-DPTPFPDQVVKLNKLNWL 192
S+ + L S + + + M +L +++ + D T + + L
Sbjct: 20 STFKAYLNGLLGQSSTANI----TEAQMNSLTYITLANINVTDLTGIE----YAHNIKDL 71
Query: 193 YLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLP 252
+ N P I L+ L L + +++ + + L L L++ ++ +
Sbjct: 72 TINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129
Query: 253 VGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLS 312
+ L + + D S N D+ ++ L L +L + + + F KL L
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLY 187
Query: 313 LYTNKLTG 320
++ + G
Sbjct: 188 AFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 2e-16
Identities = 31/182 (17%), Positives = 65/182 (35%), Gaps = 10/182 (5%)
Query: 117 QYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPF-D 175
YL+ S + + +N L ++ L + + + N+ L++ + +
Sbjct: 24 AYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG---IEYAHNIKDLTINNIHATN 80
Query: 176 PTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLV 235
P L+ L L + + + LT L L++S + I ++I L
Sbjct: 81 YNPI----SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136
Query: 236 KLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFS 295
K+ ++L N + L+ L L + + + + D + L L F
Sbjct: 137 KVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-DYRGIEDFPKLNQLYAFSQTIG 194
Query: 296 GE 297
G+
Sbjct: 195 GK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 2e-10
Identities = 28/163 (17%), Positives = 52/163 (31%), Gaps = 15/163 (9%)
Query: 67 VQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNN-V 125
+ I L+N N+ I + L++ ++ L+ L + V
Sbjct: 46 LTYITLANINVTD---LTGIEYAHNIKDLTINNIHA--TNYNPISGLSNLERLRIMGKDV 100
Query: 126 FSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPF--DPTPFPDQV 183
S P +S L L L ++ S + + + S+ + N D P
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAHDDSIL-TKINTLPKVNSIDLSYNGAITDIMPLK--- 156
Query: 184 VKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGE 226
L +L L + + I + +L L I G+
Sbjct: 157 -TLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 3e-10
Identities = 21/140 (15%), Positives = 51/140 (36%), Gaps = 6/140 (4%)
Query: 209 NLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDAST 268
+N L ++ + + L + L N ++ L G+ N+ + +
Sbjct: 21 TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINN 75
Query: 269 NFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGS 328
+ + + L+NL L++ + + L L L + + ++ ++ +
Sbjct: 76 IHAT-NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134
Query: 329 WAEFDFIDVSENLLTGPIPP 348
+ + ID+S N I P
Sbjct: 135 LPKVNSIDLSYNGAITDIMP 154
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 5e-04
Identities = 33/252 (13%), Positives = 70/252 (27%), Gaps = 63/252 (25%)
Query: 215 NLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGD 274
L + + IP L + + + +LT + + + D
Sbjct: 5 QTGLKASQDNVNIPDS--TFKAYLNGLLGQSSTANITEAQMNSLTYI---TLANINVT-D 58
Query: 275 LSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDF 334
L+ + + N+ L + + P + L L + +T L
Sbjct: 59 LTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSG------ 110
Query: 335 IDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTV 394
L + L +S+++ ++
Sbjct: 111 ---------------------------LTS---------------LTLLDISHSAHDDSI 128
Query: 395 PAGIWGLPEVNIIDIALNQIEGPIT--KDIENAKALNLLFAEYNRLSGELPEEISKATSL 452
I LP+VN ID++ N IT ++ L L +++ + I L
Sbjct: 129 LTKINTLPKVNSIDLSYNGA---ITDIMPLKTLPELKSLNIQFDGVHD--YRGIEDFPKL 183
Query: 453 VVIKLNNNQLTG 464
+ + + G
Sbjct: 184 NQLYAFSQTIGG 195
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 83.1 bits (205), Expect = 3e-17
Identities = 47/263 (17%), Positives = 85/263 (32%), Gaps = 24/263 (9%)
Query: 203 IPVEIGNLTELINLELSDN--NISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTN 260
I + I N L + + S K N+ L L +
Sbjct: 3 IMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQ 60
Query: 261 LANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTG 320
+ + L L + + L++ +N +P L L N+L+
Sbjct: 61 FSELQLNRLNLS-SLPD-NLPPQITVLEITQNALI-SLPELPAS---LEYLDACDNRLS- 113
Query: 321 ALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTL 380
LP+ S +DV N LT +P + + N+ T +P + L
Sbjct: 114 TLPELPASLKH---LDVDNNQLTM-LPELP---ALLEYINADNNQLT-MLPELPTS---L 162
Query: 381 QRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSG 440
+ V NN L +P L +++ L + ++ + + NR++
Sbjct: 163 EVLSVRNNQLT-FLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT- 220
Query: 441 ELPEEISKATSLVVIKLNNNQLT 463
+PE I I L +N L+
Sbjct: 221 HIPENILSLDPTCTIILEDNPLS 243
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 82.7 bits (204), Expect = 5e-17
Identities = 46/297 (15%), Positives = 90/297 (30%), Gaps = 49/297 (16%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFS 127
Q + NRN +L + C + +L L +L + +L ++ L++ N
Sbjct: 39 QALPGENRNEAVSLLKE--CLINQFSELQLNRLNL-SSLPDNL--PPQITVLEITQNALI 93
Query: 128 GSFPE-ISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKL 186
S PE +SL L LS + +L L V +N T P+
Sbjct: 94 -SLPELPASLEYLDACDNRLSTLPELPA--------SLKHLDVDNNQL--TMLPEL---P 139
Query: 187 NKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQ 246
L ++ N + +P +L L + +N ++ +P +L L + N
Sbjct: 140 ALLEYINADNNQL-TMLPELPTSLEVL---SVRNNQLT-FLPELPESLEALD---VSTNL 191
Query: 247 LSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFK 306
L LP + + + +N+ + +P +
Sbjct: 192 LES-LPAVPVRNHHS-------------------EETEIFFRCRENRIT-HIPENILSLD 230
Query: 307 KLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQ 363
+ L N L+ + + L + + D +
Sbjct: 231 PTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAW 287
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 82.3 bits (203), Expect = 6e-17
Identities = 50/289 (17%), Positives = 90/289 (31%), Gaps = 37/289 (12%)
Query: 100 NSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLN---LSGFSGVFPWM 156
+ Y + + K N E +N+ L LN LS P
Sbjct: 23 SGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL-INQFSELQLNRLNLSSLPDNLP-- 79
Query: 157 SLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINL 216
+ L + N P+ L +L + + +P +L L
Sbjct: 80 -----PQITVLEITQNAL--ISLPEL---PASLEYLDACDNRLS-TLPELPASLKHL--- 125
Query: 217 ELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS 276
++ +N ++ +P L + NNQL+ LP +L L N L L
Sbjct: 126 DVDNNQLT-MLPELPALLEYIN---ADNNQLT-MLPELPTSLEVL---SVRNNQLT-FLP 176
Query: 277 EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKL----VNLSLYTNKLTGALPQELGSWAEF 332
E +L L + N +PA + + N++T +P+ + S
Sbjct: 177 E--LPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPT 232
Query: 333 DFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQ 381
I + +N L+ I + ++ D + F+ L
Sbjct: 233 CTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLA 281
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 81.6 bits (201), Expect = 1e-16
Identities = 40/240 (16%), Positives = 84/240 (35%), Gaps = 29/240 (12%)
Query: 67 VQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVF 126
+ +E++ L +LP + L+ L ++L + L++LD+ NN
Sbjct: 82 ITVLEITQNALI-SLP-ELPASLEYLDACDNRLSTLPELPAS-------LKHLDVDNNQL 132
Query: 127 SGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKL 186
+ PE L+++ + + + + T+L LSV +N T P+
Sbjct: 133 T-MLPE--LPALLEYINADNNQLTMLPELP-----TSLEVLSVRNNQL--TFLPEL---P 179
Query: 187 NKLNWLYLTNCSIDGQIPVEIGNLTEL----INLELSDNNISGEIPSEIGNLVKLWRLEL 242
L L ++ ++ +P I +N I+ IP I +L + L
Sbjct: 180 ESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIIL 237
Query: 243 YNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAEL 302
+N LS ++ L T ++ + + + F +++
Sbjct: 238 EDNPLSSRIRESLSQQTAQPDYHGPRIYFS-MSDGQQNTLHRPLADAVTAWFPENKQSDV 296
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 3e-17
Identities = 58/282 (20%), Positives = 100/282 (35%), Gaps = 13/282 (4%)
Query: 189 LNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEI-GNLVKLWRLELYNNQL 247
L L I E + L LEL++N +S + NL L L L +N+L
Sbjct: 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRL 92
Query: 248 SGKLPVG-LRNLTNLANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQFSGEVPAELGK 304
+P+G L+NL D S N + L + F L NL +L++ N
Sbjct: 93 K-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150
Query: 305 FKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKR-GTMRDLLMLQ 363
L L+L LT + L + + + I KR ++ L +
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISH 209
Query: 364 NKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIW-GLPEVNIIDIALNQIEGPITKDI 422
+ + L L +++ +L VP L + ++++ N I +
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268
Query: 423 ENAKALNLLFAEYNRLSGELPEEI-SKATSLVVIKLNNNQLT 463
L + +L+ + L V+ ++ NQLT
Sbjct: 269 HELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT 309
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 2e-16
Identities = 51/263 (19%), Positives = 89/263 (33%), Gaps = 23/263 (8%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKD-LNNCVKLQYLDLGNN-- 124
+E+EL+ N+ + + L L L L N L I L LD+ N
Sbjct: 59 EELELNE-NIVSAVEPGAFNNLFNLRTLGLRSNRL-KLIPLGVFTGLSNLTKLDISENKI 116
Query: 125 --VFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPF---DPTPF 179
+ F L L+ L + + + + + +L L++
Sbjct: 117 VILLDYMF---QDLYNLKSLEVGDNDLVYI-SHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172
Query: 180 PDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWR 239
L+ L L L + +I+ L L LE+S + + L
Sbjct: 173 SH----LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS 228
Query: 240 LELYNNQLSGKLPVG-LRNLTNLANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQFSG 296
L + + L+ +P +R+L L + S N + + L L +QL Q +
Sbjct: 229 LSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAV 286
Query: 297 EVPAELGKFKKLVNLSLYTNKLT 319
P L L++ N+LT
Sbjct: 287 VEPYAFRGLNYLRVLNVSGNQLT 309
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 9e-16
Identities = 62/341 (18%), Positives = 119/341 (34%), Gaps = 25/341 (7%)
Query: 59 TCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQY 118
C++ V + +P + + L LG N + + + L+
Sbjct: 8 ECSAQDRAVL---CHRKRFV-AVPEGIPTETR---LLDLGKNRIKTLNQDEFASFPHLEE 60
Query: 119 LDLGNNVFS----GSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPF 174
L+L N+ S G+F ++L L+ L L + + P ++NL L + +N
Sbjct: 61 LELNENIVSAVEPGAF---NNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLDISENKI 116
Query: 175 DPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEI-GNLTELINLELSDNNISGEIPSEI-G 232
L L L + + + I L L L L N++ IP+E
Sbjct: 117 VILL-DYMFQDLYNLKSLEVGDNDL-VYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALS 173
Query: 233 NLVKLWRLELYNNQLSGKLPVGLRNLTNLANFD-ASTNFLEGDLSEVRFLTNLVTLQLFK 291
+L L L L + ++ + L L + + +L+ + NL +L +
Sbjct: 174 HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233
Query: 292 NQFSGEVPAE-LGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDM 350
+ VP + L L+L N ++ L I + L + P
Sbjct: 234 CNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV-VEPYA 291
Query: 351 CKR-GTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSL 390
+ +R L + N+ T + + + L+ + +N L
Sbjct: 292 FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 1e-15
Identities = 60/238 (25%), Positives = 96/238 (40%), Gaps = 21/238 (8%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKD-LNNCVKLQYLDLGNNVF 126
++++S + L L L L +G N L IS + L+ L L
Sbjct: 107 TKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDL-VYISHRAFSGLNSLEQLTLEKCNL 164
Query: 127 S----GSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQ 182
+ + S L+ L L L + + + S + L L + P+ T P+
Sbjct: 165 TSIPTEAL---SHLHGLIVLRLRHLNINAIRDY-SFKRLYRLKVLEISHWPYLDTMTPNC 220
Query: 183 VVKLNKLNWLYLTNCSIDGQIPVE-IGNLTELINLELSDNNISGEIPSEI-GNLVKLWRL 240
+ LN L L +T+C++ +P + +L L L LS N IS I + L++L +
Sbjct: 221 LYGLN-LTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEI 277
Query: 241 ELYNNQLSGKLPVG-LRNLTNLANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQFS 295
+L QL+ + R L L + S N L L E F + NL TL L N +
Sbjct: 278 QLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 23/125 (18%), Positives = 52/125 (41%), Gaps = 13/125 (10%)
Query: 58 ITCNSDSSF----VQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNC 113
+ + + + + +++ NL +P+ ++ L L L+L +N + L+
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271
Query: 114 VKLQYLDLGNN----VFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSV 169
++LQ + L V +F LN L+ L ++ + + ++ NL +L +
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAF---RGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLIL 327
Query: 170 GDNPF 174
NP
Sbjct: 328 DSNPL 332
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 81.7 bits (201), Expect = 9e-17
Identities = 53/305 (17%), Positives = 94/305 (30%), Gaps = 13/305 (4%)
Query: 19 CINSDELQILLNLKTSLKDSKSSIFSSWVSNNHFCNFTGITCNSDSSFVQEIELSNRNLK 78
L + + ++ ++ + + S V +L +L
Sbjct: 251 SREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLN 310
Query: 79 GTLPFDSICQLQALHKLSLGFNSLYGEI---SKDLNNCVKLQYLDLGNNVFSGSFPEISS 135
LP + + L +D +L +L + E+ S
Sbjct: 311 DQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELES 370
Query: 136 LNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLT 195
ELQ L + + M L L V + L
Sbjct: 371 CKELQELEPE----NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 426
Query: 196 NCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGL 255
+ + + V ++ L L+ +++ + + L+ + L+L +N+L LP L
Sbjct: 427 SKFLL-ENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPAL 482
Query: 256 RNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSG-EVPAELGKFKKLVNLSLY 314
L L AS N LE ++ V L L L L N+ L +LV L+L
Sbjct: 483 AALRCLEVLQASDNALE-NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541
Query: 315 TNKLT 319
N L
Sbjct: 542 GNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 1e-06
Identities = 27/185 (14%), Positives = 55/185 (29%), Gaps = 18/185 (9%)
Query: 17 FTCINSDELQILLNLKTSLKDSKSSIFSSWVSN--NHFCNFTGITCNSDSSFVQEIELSN 74
+ E + L T + ++ + +F +
Sbjct: 371 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR-----AAYLDDL 425
Query: 75 RNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEIS 134
R+ + + L L L + L + + +LDL +N P ++
Sbjct: 426 RSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALA 483
Query: 135 SLNELQHLYLN---LSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNW 191
+L L+ L + L G + N+ L L + +N + +V +L
Sbjct: 484 ALRCLEVLQASDNALENVDG------VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 537
Query: 192 LYLTN 196
L L
Sbjct: 538 LNLQG 542
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 5e-06
Identities = 37/240 (15%), Positives = 76/240 (31%), Gaps = 12/240 (5%)
Query: 3 TSKISLCLLLCLPFFTCINSDELQILLNLKTSLK--DSKSSIFSSWVSNNHFCNFTGITC 60
S+ LL P C +S + L + S++ S S
Sbjct: 326 DSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCL 385
Query: 61 NSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGF--NSLYGEISKDLNNCVKLQY 118
+ ++ ++ + F ++ + + L + E S ++
Sbjct: 386 LTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRV 445
Query: 119 LDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTP 178
L L + + + L + HL L+ + + P +L + L L DN +
Sbjct: 446 LHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRALPP--ALAALRCLEVLQASDNALENVD 502
Query: 179 FPDQVVKLNKLNWLYLTNCSIDG-QIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKL 237
V L +L L L N + + + L+ L L N++ + L ++
Sbjct: 503 ---GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEM 558
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 2e-16
Identities = 56/235 (23%), Positives = 90/235 (38%), Gaps = 18/235 (7%)
Query: 86 ICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLN 145
K +L S+ ++ N + + N+ S I L + L+LN
Sbjct: 20 DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLN 76
Query: 146 LSGFSGVFPWMSLGNMTNLVSLSVGDNPF-DPTPFPDQVVKLNKLNWLYLTNCSIDGQIP 204
+ + + P L N+ NL L + +N D + D L KL L L + I
Sbjct: 77 GNKLTDIKP---LANLKNLGWLFLDENKVKDLSSLKD----LKKLKSLSLEHNGISDING 129
Query: 205 VEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANF 264
+ +L +L +L L +N I+ + + L KL L L +NQ+S + L LT L N
Sbjct: 130 --LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNL 183
Query: 265 DASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLT 319
S N + DL + L NL L+LF + + + L
Sbjct: 184 YLSKNHIS-DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 3e-10
Identities = 54/215 (25%), Positives = 88/215 (40%), Gaps = 17/215 (7%)
Query: 86 ICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLN 145
+ L+ L L L N + ++S L + KL+ L L +N S + L +L+ LYL
Sbjct: 86 LANLKNLGWLFLDENKV-KDLS-SLKDLKKLKSLSLEHNGIS-DINGLVHLPQLESLYLG 142
Query: 146 LSGFSGVFPWMSLGNMTNLVSLSVGDNPF-DPTPFPDQVVKLNKLNWLYLTNCSIDGQIP 204
+ + + L +T L +LS+ DN D P L KL LYL+ I +
Sbjct: 143 NNKITDITV---LSRLTKLDTLSLEDNQISDIVPL----AGLTKLQNLYLSKNHIS-DLR 194
Query: 205 VEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANF 264
+ L L LEL + + NLV ++ + L P + + +
Sbjct: 195 -ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKP 251
Query: 265 DASTNFLEGDLSEVRFLTNL-VTLQLFKNQFSGEV 298
+ + E +EV F+ VT+ K +F G V
Sbjct: 252 NVKWHLPE-FTNEVSFIFYQPVTIGKAKARFHGRV 285
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 4e-05
Identities = 39/255 (15%), Positives = 83/255 (32%), Gaps = 63/255 (24%)
Query: 209 NLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDAST 268
E I L +++ + L + ++ N+ + + G++ L N+ +
Sbjct: 22 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNG 77
Query: 269 NFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGS 328
N L D+ + L NL L L +N+ +L K L L
Sbjct: 78 NKLT-DIKPLANLKNLGWLFLDENKVK-----DLSSLKDLKKLKS--------------- 116
Query: 329 WAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNN 388
+ + N ++ + L+ L L+ + NN
Sbjct: 117 ------LSLEHNGIS-----------DINGLVHLPQ---------------LESLYLGNN 144
Query: 389 SLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISK 448
+ T + L +++ + + NQI + L L+ N +S ++
Sbjct: 145 KI--TDITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISD--LRALAG 198
Query: 449 ATSLVVIKLNNNQLT 463
+L V++L + +
Sbjct: 199 LKNLDVLELFSQECL 213
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 2e-16
Identities = 61/265 (23%), Positives = 96/265 (36%), Gaps = 19/265 (7%)
Query: 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGN 123
S ++L N ++ L D LQ L+ L L N + K + KLQ L +
Sbjct: 53 SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111
Query: 124 NVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQV 183
N P + + L L ++ + V + N+ + +G NP + + F
Sbjct: 112 NHLV-EIPP-NLPSSLVELRIHDNRIRKVPK-GVFSGLRNMNCIEMGGNPLENSGFEPGA 168
Query: 184 VKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEI-GNLVKLWRLEL 242
KLN+L ++ + IP L L L N I I E KL+RL L
Sbjct: 169 FDGLKLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGL 224
Query: 243 YNNQLSGKLPVG-LRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAE 301
+NQ+ + G L L L N L + + L L + L N + +V
Sbjct: 225 GHNQIR-MIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT-KVGVN 282
Query: 302 -------LGKFKKLVNLSLYTNKLT 319
K +SL+ N +
Sbjct: 283 DFCPVGFGVKRAYYNGISLFNNPVP 307
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 3e-10
Identities = 56/271 (20%), Positives = 105/271 (38%), Gaps = 21/271 (7%)
Query: 203 IPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLA 262
+P EI T L L+L +N+IS + L L+ L L NN++S L L
Sbjct: 48 VPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105
Query: 263 NFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLT-GA 321
S N L + ++LV L++ N+ + + + + N L
Sbjct: 106 KLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG 163
Query: 322 LPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATY-ANCLTL 380
+ +++ +SE LTG IP D+ + T+ +L + NK I L
Sbjct: 164 FEPGAFDGLKLNYLRISEAKLTG-IPKDLPE--TLNELHLDHNKIQ-AIELEDLLRYSKL 219
Query: 381 QRFRVSNNSLKGTVPAGI-WGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLS 439
R + +N ++ + G LP + + + N++ + + + K L +++ N ++
Sbjct: 220 YRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNIT 277
Query: 440 GELPEEI-------SKATSLVVIKLNNNQLT 463
++ K I L NN +
Sbjct: 278 -KVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 6e-16
Identities = 48/271 (17%), Positives = 92/271 (33%), Gaps = 22/271 (8%)
Query: 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDL-NNCVKLQYLDLG 122
+ V+ ++LSN + + + + L L L N + I +D ++ L++LDL
Sbjct: 51 TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLS 108
Query: 123 NN----VFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTP 178
N + S F L+ L L L + + + ++T L L VG+
Sbjct: 109 YNYLSNLSSSWF---KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165
Query: 179 FPDQVVKLNKLNWLYLTNCSIDGQIPVEI-GNLTELINLELSDNNISGEIPSEI-GNLVK 236
L L L + + + ++ + +L L +
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSS 223
Query: 237 LWRLELYNNQLSG----KLPVG----LRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQ 288
+ LEL + L +L G L N + L + + ++ L+ L+
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELE 283
Query: 289 LFKNQFSGEVPAELGKFKKLVNLSLYTNKLT 319
+NQ + L + L+TN
Sbjct: 284 FSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 7e-09
Identities = 49/294 (16%), Positives = 104/294 (35%), Gaps = 45/294 (15%)
Query: 195 TNCSIDGQ------IPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLS 248
N G IP + + +L+LS+N I+ S++ V L L L +N ++
Sbjct: 32 RNGICKGSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN 89
Query: 249 GKLPVGL-RNLTNLANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQFSGEVPAEL-GK 304
+ +L +L + D S N+L +LS F L++L L L N + L
Sbjct: 90 -TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSH 147
Query: 305 FKKLVNLSLYTNKLTGALPQELGSWAEFD------FIDVSENLLTGPIPPDMCKRGTMRD 358
KL L + + ++ F +++ + L P K
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKD-----FAGLTFLEELEIDASDLQS-YEPKSLKSIQNVS 201
Query: 359 LLMLQNKFTGEIPATYANCLT-LQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGP 417
L+L K + + + + ++ + + L +++
Sbjct: 202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT----------------FHFSELSTG 245
Query: 418 ITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASIY 471
T + + L ++ + +++ + L+ ++ + NQL +P I+
Sbjct: 246 ETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIF 297
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 78.8 bits (194), Expect = 8e-16
Identities = 66/396 (16%), Positives = 141/396 (35%), Gaps = 34/396 (8%)
Query: 94 KLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEI-SSLNELQHLYLNLSGFSGV 152
L++ N + + D+ + KL+ L + +N + EL++L L+ + +
Sbjct: 25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI 84
Query: 153 FPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTE 212
S NL L + N FD P + +++L +L L+ ++ + I +L
Sbjct: 85 ----SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNI 140
Query: 213 LINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGK-------------LPVGLRNLT 259
L + + + L L+ + K + L N+
Sbjct: 141 SKVLLVLGETYGEKE--DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198
Query: 260 NLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKF---KKLVNLSLYTN 316
+ + + FL L++++ L L L + + + + + S+
Sbjct: 199 CVLEDNKCSYFLS-ILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257
Query: 317 KLTGALPQELGSWA-----EFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIP 371
KL G L ++ V ++ P + + + ++ T +
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFP-QSYIYEIFSNMNIKNFTVSGTRMVH 316
Query: 372 ATYANCLT-LQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIE--GPITKDIENAKAL 428
+ ++ SNN L TV L E+ + + +NQ++ I + K+L
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL 376
Query: 429 NLLFAEYNRLSGELPEEI-SKATSLVVIKLNNNQLT 463
L N +S + + S SL+ + +++N LT
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 75.7 bits (186), Expect = 8e-15
Identities = 75/406 (18%), Positives = 144/406 (35%), Gaps = 29/406 (7%)
Query: 80 TLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFS--GSFPEISSLN 137
L Q L L L N L V L++LDL N F E +++
Sbjct: 59 YLDISVFKFNQELEYLDLSHNKLVKISCHPT---VNLKHLDLSFNAFDALPICKEFGNMS 115
Query: 138 ELQHLYLNLSGF-SGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTN 196
+L+ L L+ + ++ N++ ++ + P Q L+ ++ TN
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175
Query: 197 CSIDGQIPVEIGNLTELINLELSDNNISGE------IPSEIGNLVKLWRLELYNNQLSGK 250
+ V + + L + + I +++ KL L L N + +
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235
Query: 251 LPVGLRNL---TNLANFDASTNFLEGDLSEVRF------LTNLVTLQLFKNQFSGEVPAE 301
+ + L T + F S L+G L F L L Q+ + F
Sbjct: 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295
Query: 302 LGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLM 361
F + + + + F +D S NLLT + C T + L+
Sbjct: 296 YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD-TVFENCGHLTELETLI 354
Query: 362 LQ-NKFT--GEIPATYANCLTLQRFRVSNNSLKGTVPAGIW-GLPEVNIIDIALNQIEGP 417
LQ N+ +I +LQ+ +S NS+ G + ++++ N +
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414
Query: 418 ITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463
I + + + +L N++ +P+++ K +L + + +NQL
Sbjct: 415 IFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 7e-14
Identities = 50/312 (16%), Positives = 107/312 (34%), Gaps = 21/312 (6%)
Query: 17 FTCINSDELQILLNLKTSLKDSKSSIFSSWVSNNH--FCNFTGITCNSDSSFVQEIELSN 74
+N ++ ++L K+ + + H F D S L
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194
Query: 75 RNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEIS 134
N+K L + + L + + + L ++ N F +
Sbjct: 195 SNIKCVLEDNKCSYF---------LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW 245
Query: 135 SLNELQHLYLNLSGFSGVFPWMSL-GNMTNLVSLSVGDNPFDPTPFPDQVV--KLNKLNW 191
+ + ++ G + + T+L +LS+ D FP + + +N
Sbjct: 246 HTT-VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNI 304
Query: 192 LYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLS--G 249
T + ++ ++L+ S+N ++ + G+L +L L L NQL
Sbjct: 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364
Query: 250 KLPVGLRNLTNLANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQFSGEVPAELGKFKK 307
K+ + +L D S N + D + +L++L + N + + L +
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPR 422
Query: 308 LVNLSLYTNKLT 319
+ L L++NK+
Sbjct: 423 IKVLDLHSNKIK 434
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 9e-13
Identities = 48/268 (17%), Positives = 87/268 (32%), Gaps = 22/268 (8%)
Query: 38 SKSSIFSSWVSNNHFCNFTGITCNSDSSFVQEIELSNRNLK----GTLPFDSICQLQALH 93
++++ +SN + D S LS + G ++
Sbjct: 245 WHTTVWYFSISNVKL-QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMN 303
Query: 94 KLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEI-SSLNELQHLYLN------L 146
+ + + +LD NN+ + + E L EL+ L L L
Sbjct: 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL 363
Query: 147 SGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVE 206
S + + M +L L + N L L +++ + I
Sbjct: 364 SKIAEMT-----TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418
Query: 207 IGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVG-LRNLTNLANFD 265
+ + L+L N I IP ++ L L L + +NQL +P G LT+L
Sbjct: 419 L--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIW 474
Query: 266 ASTNFLEGDLSEVRFLTNLVTLQLFKNQ 293
TN + + +L+ + K Q
Sbjct: 475 LHTNPWDCSCPRIDYLSRWLNKNSQKEQ 502
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 4e-08
Identities = 40/216 (18%), Positives = 71/216 (32%), Gaps = 10/216 (4%)
Query: 202 QIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVG-LRNLTN 260
+P ++ T L +S N IS S+I +L KL L + +N++ L + +
Sbjct: 14 HVPKDLSQKTT--ILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQE 70
Query: 261 LANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQF-SGEVPAELGKFKKLVNLSLYTNKLT 319
L D S N L +S NL L L N F + + E G +L L L T L
Sbjct: 71 LEYLDLSHNKLVK-ISC-HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128
Query: 320 GALPQELGSWAEFDFIDVSENLLTGPIPPD---MCKRGTMRDLLMLQNKFTGEIPATYAN 376
+ + + V P+ ++ + +F + +
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKT 188
Query: 377 CLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALN 412
L+ + + L ++ N
Sbjct: 189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSN 224
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 1e-15
Identities = 61/261 (23%), Positives = 97/261 (37%), Gaps = 24/261 (9%)
Query: 53 CNFTGITCNSDS---------SFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLY 103
C+ T I CNS S +EL + L+ +LP +L L KLSL N L
Sbjct: 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLS 65
Query: 104 --GEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNM 161
G S+ L+YLDL N L +L+HL S + + ++
Sbjct: 66 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125
Query: 162 TNLVSLSVGDNPFDPTPFPDQV-VKLNKLNWLYLTNCSIDGQIPVEI-GNLTELINLELS 219
NL+ L + + + L+ L L + S +I L L L+LS
Sbjct: 126 RNLIYLDISHTHT--RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 220 DNNISGEIPSEI-GNLVKLWRLELYNNQLSGKLPVG-LRNLTNLANFDASTNFLEGDLSE 277
+ ++ +L L L + +N L + L +L D S N + +
Sbjct: 184 QCQLE-QLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM-TSKK 240
Query: 278 VRF---LTNLVTLQLFKNQFS 295
++L L L +N F+
Sbjct: 241 QELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-09
Identities = 48/268 (17%), Positives = 81/268 (30%), Gaps = 35/268 (13%)
Query: 202 QIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGK--LPVGLRNLT 259
+P I + LEL N + L +L +L L +N LS K T
Sbjct: 21 SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78
Query: 260 NLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLT 319
+L D S N + S L L L + ++ E F L NL
Sbjct: 79 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK-QMS-EFSVFLSLRNL-------- 128
Query: 320 GALPQELGSWAEFDFIDVSENLLTGPIPPDMCKR-GTMRDLLMLQNKFTGEIPA-TYANC 377
L D+S + ++ L M N F +
Sbjct: 129 ----IYL---------DISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 174
Query: 378 LTLQRFRVSNNSLKGTVPAGI-WGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYN 436
L +S L+ + L + +++++ N T + +L +L N
Sbjct: 175 RNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233
Query: 437 RLSGELPEEI--SKATSLVVIKLNNNQL 462
+ ++ +SL + L N
Sbjct: 234 HIM-TSKKQELQHFPSSLAFLNLTQNDF 260
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 1e-15
Identities = 57/367 (15%), Positives = 116/367 (31%), Gaps = 38/367 (10%)
Query: 129 SFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNK 188
PE+ + + ++ L+L+ + + S + +L L V + L+
Sbjct: 24 QVPELPA--HVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80
Query: 189 LNWLYLTNCSIDGQIPVEI-GNLTELINLELSDNNI-SGEIPSEI-GNLVKLWRLELYNN 245
L L L Q+ L L L L+ N+ + L L L L +N
Sbjct: 81 LIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139
Query: 246 QLSGKLPVGL-RNLTNLANFDASTN-----------FLEGDLSEVRFLTNLVTLQLFKNQ 293
+ P N+ D + N +G + L+++ + +
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199
Query: 294 FSGEVPAELGKFKKLVNLSLYTNKLTGALP------------QELGSWAEFDFIDVSENL 341
E K + L L N ++ Q L ++ +
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259
Query: 342 LTGPIPPDMCKRGTMRDL--LMLQNKFTGEIPATYANCLT-LQRFRVSNNSLKGTVPAGI 398
K + L + + + T L++ ++ N + +
Sbjct: 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNA 318
Query: 399 -WGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEI-SKATSLVVIK 456
WGL + ++++ N + ++ EN L +L YN + L ++ +L +
Sbjct: 319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELA 377
Query: 457 LNNNQLT 463
L+ NQL
Sbjct: 378 LDTNQLK 384
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 5e-13
Identities = 58/350 (16%), Positives = 114/350 (32%), Gaps = 35/350 (10%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKD-LNNCVKLQYLDLGNNVF 126
Q +++ + + ++ L +L L L +N ++ N L+ L L
Sbjct: 57 QFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF-LQLETGAFNGLANLEVLTLTQCNL 115
Query: 127 S------GSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTP-- 178
F L L+ L L + + P NM L + N
Sbjct: 116 DGAVLSGNFFK---PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE 172
Query: 179 ----FPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLE---LSDNNISGEIPSEI 231
F + L +L+ + L + + + GN + ++ LS N +
Sbjct: 173 DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF 232
Query: 232 GNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFK 291
+ + +++ S + + NF NF L + + T L K
Sbjct: 233 FDAIAGTKIQSLILSNSYNMGSSFGHT----NFKDPDNFTFKGLEA----SGVKTCDLSK 284
Query: 292 NQFSGEVPAEL-GKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDM 350
++ + + F L L+L N++ +++S+N L I M
Sbjct: 285 SKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS-IDSRM 342
Query: 351 CKR-GTMRDLLMLQNKFTGEIPA-TYANCLTLQRFRVSNNSLKGTVPAGI 398
+ + L + N + ++ L+ + N LK +VP GI
Sbjct: 343 FENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGI 390
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 1e-12
Identities = 45/293 (15%), Positives = 87/293 (29%), Gaps = 41/293 (13%)
Query: 211 TELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGL-RNLTNLANFDASTN 269
+ ++LS N+I+ + L L L++ + R L++L N
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 270 FLEGDLSEVRF--LTNLVTLQLFKNQF-SGEVPAELGKFKKLVNL---SLYTNKLTGALP 323
L F L NL L L + + FK L +L L N + P
Sbjct: 90 QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSG--NFFKPLTSLEMLVLRDNNIKKIQP 146
Query: 324 QEL-GSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLML-----------QNKFTGEIP 371
+ F +D++ N + I + + +L + E
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVKS-ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205
Query: 372 ATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVN-IIDIALNQIEGPITKDIEN------ 424
++ +S N K ++ + I + L+ +
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265
Query: 425 --------AKALNLLFAEYNRLSGELPEEI-SKATSLVVIKLNNNQLTGKIPA 468
A + +++ L + + S T L + L N++ KI
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDD 316
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 2e-09
Identities = 50/227 (22%), Positives = 81/227 (35%), Gaps = 27/227 (11%)
Query: 89 LQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVF----SGSFPEISSLNELQHLYL 144
L ++ + L E + + LDL N F + F + + ++Q L L
Sbjct: 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246
Query: 145 NLSGFSG-VFPWMSLGNM----------TNLVSLSVGDNPFDPTPFPDQV-VKLNKLNWL 192
+ S G F + + + + + + + V L L
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI--FALLKSVFSHFTDLEQL 304
Query: 193 YLTNCSIDGQIPVEI-GNLTELINLELSDNNISGEIPSEI-GNLVKLWRLELYNNQLSGK 250
L I+ +I LT L+ L LS N + I S + NL KL L+L N +
Sbjct: 305 TLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRA- 361
Query: 251 LPVGL-RNLTNLANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQF 294
L L NL TN L+ + + F LT+L + L N +
Sbjct: 362 LGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 2e-15
Identities = 57/266 (21%), Positives = 101/266 (37%), Gaps = 24/266 (9%)
Query: 59 TCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQY 118
+C++ S V +NL+ +P + L +L N + + L+
Sbjct: 40 SCSNQFSKVI---CVRKNLR-EVPDGISTNTRLL---NLHENQIQIIKVNSFKHLRHLEI 92
Query: 119 LDLGNN----VFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPF 174
L L N + G+F + L L L L + + + P + ++ L L + +NP
Sbjct: 93 LQLSRNHIRTIEIGAF---NGLANLNTLELFDNRLTTI-PNGAFVYLSKLKELWLRNNPI 148
Query: 175 DPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEI-GNLTELINLELSDNNISGEIPSEIGN 233
+ P ++ L L L I L+ L L L+ N+ EIP+ +
Sbjct: 149 ESIP-SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTP 205
Query: 234 LVKLWRLELYNNQLSGKLPVG-LRNLTNLANFDASTNFLEGDLSEVRF--LTNLVTLQLF 290
L+KL L+L N LS + G + L +L + ++ + F L +LV + L
Sbjct: 206 LIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLA 263
Query: 291 KNQFSGEVPAELGKFKKLVNLSLYTN 316
N + L + L+ N
Sbjct: 264 HNNLTLLPHDLFTPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 3e-09
Identities = 54/258 (20%), Positives = 90/258 (34%), Gaps = 36/258 (13%)
Query: 211 TELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVG-LRNLTNLANFDASTN 269
T L L +N I + +L L L+L N + + +G L NL + N
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN 122
Query: 270 FLEGDLSEVRF--LTNLVTLQLFKNQFSGEVPAEL-GKFKKLVNLSLY-TNKLTGALPQE 325
L + F L+ L L L N +P+ + L L L +L+
Sbjct: 123 RLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLS------ 174
Query: 326 LGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRV 385
+SE G +R L + EIP + L +
Sbjct: 175 ----------YISEGAFEGL--------SNLRYLNLAMCNLR-EIP-NLTPLIKLDELDL 214
Query: 386 SNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEE 445
S N L P GL + + + +QI+ +N ++L + +N L+ LP +
Sbjct: 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHD 273
Query: 446 I-SKATSLVVIKLNNNQL 462
+ + L I L++N
Sbjct: 274 LFTPLHHLERIHLHHNPW 291
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 5e-15
Identities = 60/397 (15%), Positives = 121/397 (30%), Gaps = 66/397 (16%)
Query: 67 VQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVF 126
+ ++ N ++ I +L L KL N++ + DL+ L YL +N
Sbjct: 44 LTSLDCHNSSITD---MTGIEKLTGLTKLICTSNNI---TTLDLSQNTNLTYLACDSNKL 97
Query: 127 SGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKL 186
+ +++ L +L +L + + + + + L L+ N
Sbjct: 98 TN--LDVTPLTKLTYLNCDTNKLTKL----DVSQNPLLTYLNCARNTLTEIDVS----HN 147
Query: 187 NKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQ 246
+L L +++ T+L L+ S N I+ ++ L RL N
Sbjct: 148 TQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNN 202
Query: 247 LSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFK 306
++ + L L D S+N L +V LT L N + E+ +
Sbjct: 203 ITK---LDLNQNIQLTFLDCSSNKLTE--IDVTPLTQLTYFDCSVNPLT-ELD--VSTLS 254
Query: 307 KLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKF 366
KL L L ID++ N + +
Sbjct: 255 KLTTLHCIQTDLLE--------------IDLTHNT-------------QLIYFQAEGCRK 287
Query: 367 TGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAK 426
E+ T + L + + + P++ + + ++ D+ +
Sbjct: 288 IKELDVT--HNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT---ELDVSHNT 339
Query: 427 ALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463
L L + + + K +L Q
Sbjct: 340 KLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTI 374
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 52/298 (17%), Positives = 100/298 (33%), Gaps = 32/298 (10%)
Query: 166 SLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISG 225
+L G FPD + + + L L +L+ +++I+
Sbjct: 2 TLKAGQTQSFNDWFPD-----DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD 56
Query: 226 EIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLV 285
+ I L L +L +N ++ L + TNL +N L +V LT L
Sbjct: 57 --MTGIEKLTGLTKLICTSNNIT-TLDLS--QNTNLTYLACDSNKLTNL--DVTPLTKLT 109
Query: 286 TLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGP 345
L N+ + ++ + L L+ N LT ++ + +D N
Sbjct: 110 YLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITK 163
Query: 346 IPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVN 405
+ + + L NK T E+ + L R N++ + + ++
Sbjct: 164 LDVTPQTQ--LTTLDCSFNKIT-ELDVS--QNKLLNRLNCDTNNIT-KLD--LNQNIQLT 215
Query: 406 IIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463
+D + N++ D+ L N L+ EL +S + L + L
Sbjct: 216 FLDCSSNKLT---EIDVTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLL 267
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 2e-14
Identities = 51/260 (19%), Positives = 88/260 (33%), Gaps = 39/260 (15%)
Query: 92 LHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNN----VFSGSFPEISSLNELQHLYLN-- 145
L L N + D N L L L NN + G+F + L +L+ LYL+
Sbjct: 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF---APLVKLERLYLSKN 110
Query: 146 -LSGF-SGVF----------------PWMSLGNMTNLVSLSVGDNPFDPTPFPDQV-VKL 186
L + + ++ + +G NP + + +
Sbjct: 111 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170
Query: 187 NKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEI-GNLVKLWRLELYNN 245
KL+++ + + +I IP G L L L N I+ ++ + L L +L L N
Sbjct: 171 KKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFN 226
Query: 246 QLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSG------EVP 299
+S L N +L + N L + + + L N S P
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286
Query: 300 AELGKFKKLVNLSLYTNKLT 319
K +SL++N +
Sbjct: 287 GYNTKKASYSGVSLFSNPVQ 306
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 8e-11
Identities = 62/285 (21%), Positives = 98/285 (34%), Gaps = 48/285 (16%)
Query: 192 LYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEI-GNLVKLWRLELYNNQLSGK 250
L L N I + NL L L L +N IS +I LVKL RL L NQL +
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLK-E 114
Query: 251 LPVGLRNLTNLANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQFSGEVPAELGKFKKL 308
LP + L N + + + F L ++ ++L N E G F+ +
Sbjct: 115 LPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLK-SSGIENGAFQGM 170
Query: 309 VNL---SLYTNKLT----GALP--QELGSWAEFDFIDVSENLLTGPIPPDMCKR-GTMRD 358
L + +T G P EL + N +T + K +
Sbjct: 171 KKLSYIRIADTNITTIPQGLPPSLTEL---------HLDGNKITK-VDAASLKGLNNLAK 220
Query: 359 LLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPI 418
L + N + + AN L+ ++NN L VP G+ + ++ + N I
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS--- 276
Query: 419 TKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463
I + P +K S + L +N +
Sbjct: 277 --AIGSN-------------DFCPPGYNTKKASYSGVSLFSNPVQ 306
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 2e-14
Identities = 60/238 (25%), Positives = 98/238 (41%), Gaps = 24/238 (10%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKD-LNNCVKLQYLDLGNN-- 124
+ + L N++ + D+ L L L LG NS+ +I N L L+L +N
Sbjct: 78 RYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDNWL 135
Query: 125 --VFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNP----FDPTP 178
+ SG+F L++L+ L+L + + P + + +L+ L +G+
Sbjct: 136 TVIPSGAF---EYLSKLRELWLRNNPIESI-PSYAFNRVPSLMRLDLGELKKLEYISEGA 191
Query: 179 FPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLW 238
F L L +L L C+I +P + L L LE+S N+ P L L
Sbjct: 192 FEG----LFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245
Query: 239 RLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQF 294
+L + N+Q+S L +L + + N L L F L LV L L N +
Sbjct: 246 KLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 8e-09
Identities = 51/261 (19%), Positives = 92/261 (35%), Gaps = 42/261 (16%)
Query: 211 TELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVG-LRNLTNLANFDASTN 269
+ L L +NNI +L L L+L N + ++ VG L +L + N
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDN 133
Query: 270 FLEGDLSEVRF--LTNLVTLQLFKNQFSGEVPAELGKFKKLVNL-SLY---TNKLTGALP 323
+L + F L+ L L L N +P+ F ++ +L L KL
Sbjct: 134 WLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYA--FNRVPSLMRLDLGELKKLE---- 185
Query: 324 QELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRF 383
+SE G ++ L + ++P + L+
Sbjct: 186 ------------YISEGAFEGL--------FNLKYLNLGMCNIK-DMP-NLTPLVGLEEL 223
Query: 384 RVSNNSLKGTVPAG-IWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGEL 442
+S N + G GL + + + +Q+ + +L L +N LS L
Sbjct: 224 EMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SL 281
Query: 443 PEEI-SKATSLVVIKLNNNQL 462
P ++ + LV + L++N
Sbjct: 282 PHDLFTPLRYLVELHLHHNPW 302
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 1e-13
Identities = 47/212 (22%), Positives = 79/212 (37%), Gaps = 17/212 (8%)
Query: 92 LHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFS----GSFPEISSLNELQHLYLNLS 147
++ L N + + C L L L +NV + +F + L L+ L L+ +
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF---TGLALLEQLDLSDN 90
Query: 148 GFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQV-VKLNKLNWLYLTNCSIDGQIPVE 206
+ + L +L + + L L +LYL + ++ +P +
Sbjct: 91 AQLRSVDPATFHGLGRLHTLHLDRCGL--QELGPGLFRGLAALQYLYLQDNALQ-ALPDD 147
Query: 207 I-GNLTELINLELSDNNISGEIPSEI-GNLVKLWRLELYNNQLSGKLPVGLRNLTNLANF 264
+L L +L L N IS +P L L RL L+ N+++ P R+L L
Sbjct: 148 TFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206
Query: 265 DASTNFLEGDLSEVRF--LTNLVTLQLFKNQF 294
N L L L L L+L N +
Sbjct: 207 YLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-09
Identities = 42/216 (19%), Positives = 69/216 (31%), Gaps = 10/216 (4%)
Query: 202 QIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNL 261
+PV I + L N IS + L L L++N L+ L L
Sbjct: 25 AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82
Query: 262 ANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQFSGEVPAE-LGKFKKLVNLSLYTNKL 318
D S N + F L L TL L + E+ L L L N L
Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141
Query: 319 TGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKR-GTMRDLLMLQNKFTGEIPATYANC 377
+ + N ++ +P + ++ LL+ QN+ P + +
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200
Query: 378 LTLQRFRVSNNSLKGTVPAGIW-GLPEVNIIDIALN 412
L + N+L +P L + + + N
Sbjct: 201 GRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 6e-05
Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 9/112 (8%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNN--- 124
Q + L + L+ LP D+ L L L L N + + L L L N
Sbjct: 132 QYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190
Query: 125 -VFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFD 175
V +F L L LYL + S + P +L + L L + DNP+
Sbjct: 191 HVHPHAF---RDLGRLMTLYLFANNLSAL-PTEALAPLRALQYLRLNDNPWV 238
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 17/191 (8%)
Query: 282 TNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENL 341
+ L N+ S A + L L L++N L A + +D+S+N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 342 LTGPIPPDMCKRGTMRDLLMLQ------NKFTGEIPA-TYANCLTLQRFRVSNNSLKGTV 394
+ P T L L E+ + LQ + +N+L+ +
Sbjct: 92 QLRSVDP-----ATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-AL 144
Query: 395 PAGIW-GLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEI-SKATSL 452
P + L + + + N+I + +L+ L NR++ + L
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRL 203
Query: 453 VVIKLNNNQLT 463
+ + L N L+
Sbjct: 204 MTLYLFANNLS 214
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 2e-13
Identities = 75/393 (19%), Positives = 146/393 (37%), Gaps = 32/393 (8%)
Query: 95 LSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFS----GSFPEISSLNELQHLYLNLSGFS 150
LSL NS+ D++ +L+ L L +N F +L++L ++ +
Sbjct: 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVF---LFNQDLEYLDVSHNRLQ 113
Query: 151 GVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNL 210
+ S M +L L + N FD P + L KL +L L+ + + +L
Sbjct: 114 NI----SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL 169
Query: 211 -TELINLELSDNNISGEIPSEI--GNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDAS 267
I L+L +I G + N L + N+ S ++ + + L +L +
Sbjct: 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK 229
Query: 268 TNF-----LEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKF---KKLVNLSLYTNKLT 319
N L LSE+ L+ + L + + + +L +F + + L++Y +T
Sbjct: 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT 289
Query: 320 GALPQELGSWAE-----FDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATY 374
+ +E +++E V + + ++ ML T I
Sbjct: 290 ERIDREEFTYSETALKSLMIEHVKNQVFLFS-KEALYSVFAEMNIKMLSISDTPFIHMVC 348
Query: 375 ANCLT-LQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIE--GPITKDIENAKALNLL 431
+ + N +V G L + + + N ++ + +N +L L
Sbjct: 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL 408
Query: 432 FAEYNRL-SGELPEEISKATSLVVIKLNNNQLT 463
N L S + A S++V+ L++N LT
Sbjct: 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 1e-12
Identities = 56/411 (13%), Positives = 131/411 (31%), Gaps = 42/411 (10%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSL-YGEISKDLNNCVKLQYLDLGNNVF 126
+ +++S+ L+ + + L+ L L FN + K+ N KL +L L F
Sbjct: 103 EYLDVSHNRLQ-NISCCPMASLR---HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158
Query: 127 SGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFP------ 180
+ L + L+L + + N L + +P
Sbjct: 159 RQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVN 218
Query: 181 -DQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWR 239
++L+ + + + T L+N+ L + + ++
Sbjct: 219 ALGHLQLSNIKLNDENCQRLMTFLSELTRGPT-LLNVTLQHIETTWKCSVKLFQFFWPRP 277
Query: 240 LE---LYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSG 296
+E +YN ++ ++ + A L +L+ + F
Sbjct: 278 VEYLNIYNLTITERIDREEFTYSETA------------------LKSLMIEHVKNQVFLF 319
Query: 297 EVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTM 356
A F ++ L + S + F F++ ++N+ T C
Sbjct: 320 SKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD-SVFQGCSTLKR 378
Query: 357 RDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLK----GTVPAGIWGLPEVNIIDIALN 412
L+LQ + + SL + +++++ N
Sbjct: 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438
Query: 413 QIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463
+ G + + + + +L NR+ +P++++ +L + + +NQL
Sbjct: 439 MLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 1e-09
Identities = 35/242 (14%), Positives = 85/242 (35%), Gaps = 20/242 (8%)
Query: 65 SFVQEIELSNRNLKGTLPFDSI----CQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLD 120
V+ + + N + + + L++L + + ++
Sbjct: 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM 335
Query: 121 LGNNVFSGSFPEI--SSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTP 178
L + + + S + L + F+ + L +L + N
Sbjct: 336 LSIS-DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNGL--KN 391
Query: 179 FPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTE----LINLELSDNNISGEIPSEIGNL 234
F + ++ L + S++ ++ L LS N ++G + +
Sbjct: 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--P 449
Query: 235 VKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRF--LTNLVTLQLFKN 292
K+ L+L+NN++ +P + +L L + ++N L+ + + F LT+L + L N
Sbjct: 450 PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507
Query: 293 QF 294
+
Sbjct: 508 PW 509
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 6e-09
Identities = 55/364 (15%), Positives = 114/364 (31%), Gaps = 48/364 (13%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQ-ALHKLSLGFNSLYGEISKDLN--NCVKLQYLDLGNN 124
+ LS + L + L + L L + G ++ L N L + N+
Sbjct: 149 TFLGLSAAKFR-QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207
Query: 125 VFS------GSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTP 178
+FS + L+ ++ N ++ G V+L + + +
Sbjct: 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267
Query: 179 FPDQVVKLNKLNWLYLTNCSIDGQIPVEIGN----------------------------- 209
Q + +L + N +I +I E
Sbjct: 268 KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV 327
Query: 210 LTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTN 269
E+ LS ++ + L N + + G L L N
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387
Query: 270 FLEGDLSEVRF-LTNLVTLQLFKNQF----SGEVPAELGKFKKLVNLSLYTNKLTGALPQ 324
L+ + +V N+ +L+ S + ++ L+L +N LTG++ +
Sbjct: 388 GLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR 446
Query: 325 ELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFR 384
L + +D+ N + IP D+ +++L + N+ + +LQ
Sbjct: 447 CLPP--KVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW 503
Query: 385 VSNN 388
+ +N
Sbjct: 504 LHDN 507
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 4e-07
Identities = 45/253 (17%), Positives = 78/253 (30%), Gaps = 14/253 (5%)
Query: 196 NCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGL 255
+ S V L LS N+IS +I L +L L L +N++ L +
Sbjct: 37 DYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHV 95
Query: 256 -RNLTNLANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQF-SGEVPAELGKFKKLVNL 311
+L D S N L + + +L L L N F V E G KL L
Sbjct: 96 FLFNQDLEYLDVSHN----RLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFL 151
Query: 312 SLYTNKLT-GALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEI 370
L K L +D+ + G + T L+ +
Sbjct: 152 GLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSV 211
Query: 371 PA----TYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAK 426
L L ++++ + + + ++++ L IE ++ +
Sbjct: 212 QVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271
Query: 427 ALNLLFAEYNRLS 439
EY +
Sbjct: 272 FFWPRPVEYLNIY 284
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 82 PFDSICQLQA-LHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPE-ISSLNEL 139
+D C + L+L N L G + + L K++ LDL NN S P+ ++ L L
Sbjct: 419 AYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQAL 475
Query: 140 QHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFD 175
Q L + + V P +T+L + + DNP+D
Sbjct: 476 QELNVASNQLKSV-PDGVFDRLTSLQYIWLHDNPWD 510
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 3e-12
Identities = 34/211 (16%), Positives = 64/211 (30%), Gaps = 17/211 (8%)
Query: 110 LNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSV 169
+LG + L+ +Q+ + S + + TNL L +
Sbjct: 15 DPGLANAVKQNLGKQSVT-DLVSQKELSGVQNFNGDNSNIQSLAG---MQFFTNLKELHL 70
Query: 170 GDNPF-DPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIP 228
N D +P L KL L + + + L L L +N +
Sbjct: 71 SHNQISDLSPL----KDLTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNNELRD--T 121
Query: 229 SEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQ 288
+ +L L L + NN+L + L L+ L D N + + + L + +
Sbjct: 122 DSLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEIT-NTGGLTRLKKVNWID 178
Query: 289 LFKNQFSGEVPAELGKFKKLVNLSLYTNKLT 319
L + E + + +
Sbjct: 179 LTGQKCVNEPVKYQPELYITNTVKDPDGRWI 209
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 42/246 (17%), Positives = 82/246 (33%), Gaps = 17/246 (6%)
Query: 53 CNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNN 112
+ T + + S VQ N N++ + L +L L N + ++S L +
Sbjct: 29 QSVTDLVSQKELSGVQNFNGDNSNIQS---LAGMQFFTNLKELHLSHNQI-SDLS-PLKD 83
Query: 113 CVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDN 172
KL+ L + N + I S L L+L+ + L ++ NL LS+ +N
Sbjct: 84 LTKLEELSVNRNRLK-NLNGIPSAC-LSRLFLDNNELRDTDS---LIHLKNLEILSIRNN 138
Query: 173 PFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIG 232
+ L+KL L L I + L ++ ++L+ E
Sbjct: 139 KLKSIVM---LGFLSKLEVLDLHGNEITNTGGLT--RLKKVNWIDLTGQKCVNEPVKYQP 193
Query: 233 NLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKN 292
L ++ + + P + N + + + + + +
Sbjct: 194 ELYITNTVKDPDGRWIS--PYYISNGGSYVDGCVLWELPVYTDEVSYKFSEYINVGETEA 251
Query: 293 QFSGEV 298
F G V
Sbjct: 252 IFDGTV 257
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 7e-07
Identities = 46/259 (17%), Positives = 77/259 (29%), Gaps = 40/259 (15%)
Query: 207 IGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDA 266
L + L +++ + L + N+ + L G++ TNL
Sbjct: 15 DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHL 70
Query: 267 STNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQEL 326
S N + DLS ++ LT L L + +N+ L L L N+L L
Sbjct: 71 SHNQIS-DLSPLKDLTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNNELRDTDS--L 124
Query: 327 GSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVS 386
+ + + N L ++ML L+ +
Sbjct: 125 IHLKNLEILSIRNNKLK--------------SIVML------------GFLSKLEVLDLH 158
Query: 387 NNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEI 446
N + T G+ L +VN ID+ + K N + R P I
Sbjct: 159 GNEI--TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS--PYYI 214
Query: 447 SKATSLVVIKLNNNQLTGK 465
S S V +
Sbjct: 215 SNGGSYVDGCVLWELPVYT 233
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 4e-12
Identities = 70/459 (15%), Positives = 139/459 (30%), Gaps = 131/459 (28%)
Query: 67 VQEI-ELSNRNLKGTLPFDSICQLQA---------LHKLSLGFNSLYGEISKDLN--NCV 114
+ I + F ++ Q + +++ F L I + + +
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF--LMSPIKTEQRQPSMM 108
Query: 115 KLQYLDLGNNVFSGS--FPEIS------------SLNELQ-HLYLNLSGFSGVFPWMSLG 159
Y++ + +++ + F + + +L EL+ + + G G G
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS------G 162
Query: 160 NMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELS 219
T + ++ WL L NC+ + + L I+ +
Sbjct: 163 K-TWVALDVCLSYKVQCK-MDFKIF------WLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 220 DN-----NISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTN---LANFDAS--TN 269
NI I S L +L + + Y N L L V L N+ N F+ S
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL---L-V-LLNVQNAKAWNAFNLSCKIL 269
Query: 270 FLEGDLSEVRFLTNLVTLQLFKNQFS-GEVPAE-LGKFKKLVNLSLYTNKLTGALPQELG 327
FL+ T + + S P E K ++ PQ+L
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR----------PQDL- 318
Query: 328 SWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCL-TLQRFR-V 385
P ++ L + I + + L T ++ V
Sbjct: 319 -------------------PREVLTTNPR--RLSI-------IAESIRDGLATWDNWKHV 350
Query: 386 SNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDI--------ENAK----ALNLLFA 433
+ + L II+ +LN +E + + +A L+L++
Sbjct: 351 NCDKLT-------------TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 434 EYNRLSGELPEEI-SKATSLVVIKLNNNQLTGKIPASIY 471
+ + + +K +++ + T IP SIY
Sbjct: 398 D---VIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SIY 432
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 4e-06
Identities = 63/482 (13%), Positives = 142/482 (29%), Gaps = 154/482 (31%)
Query: 32 KTSL-----KDSK------SSIFSSWVSNNHFCNFTGITCNSDSSFVQEIELSNRNLKGT 80
KT + K IF W++ + CNS + ++ ++ L
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIF--WLNLKN--------CNSPETVLEMLQ----KLLYQ 208
Query: 81 LPFDSICQLQALHKLSLGFNSLYGEIS-----KDLNNCVKLQYLDLGNNV--------FS 127
+ + + + L +S+ E+ K NC L L NV F+
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC--LLVLL---NVQNAKAWNAFN 263
Query: 128 GS--------FPEIS-SLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTP 178
S F +++ L+ +++L S + + +L+ + P D
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL---TPDEVKSLLLKYLDCRPQD--- 317
Query: 179 FPDQVVKLNKL-----------------NWLYLTN--------CSIDGQIPVEIGNLTEL 213
P +V+ N NW ++ S++ P E +
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM--F 375
Query: 214 INLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEG 273
L + + IP+ + L +W + ++ + + N + +E
Sbjct: 376 DRLSVFPPSA--HIPTIL--LSLIWFDVIKSDVMV------------VVNKLHKYSLVEK 419
Query: 274 DLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVN-----LSLYTNKLTGALPQELGS 328
E ++ ++ L + ++ E + +V+ + ++ L P
Sbjct: 420 QPKESTI--SIPSIYL---ELKVKLENEYALHRSIVDHYNIPKTFDSDDLI--PPYLDQY 472
Query: 329 W-------------AE-----------FDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQN 364
+ E F F+ E + + L L+
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFL---EQKIRHDSTAWNASGSILNTLQQLKF 529
Query: 365 --KFTGEIPATYANCL-TLQRF--RVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPIT 419
+ + Y + + F ++ N + +++ IAL + I
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENLICS---------KYTDLLRIALMAEDEAIF 580
Query: 420 KD 421
++
Sbjct: 581 EE 582
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 6e-04
Identities = 55/387 (14%), Positives = 102/387 (26%), Gaps = 120/387 (31%)
Query: 7 SLCLLLCLPFFTCINSDELQILLNLKTSLKDSKSSIFSSW-----------VSN----NH 51
L + + SD + S++ + S V N N
Sbjct: 204 KLLYQIDPNW--TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 52 F---C------NFTGITCNSDSSFVQEIELSNRNLKGTLPFDSI--------CQLQALHK 94
F C F +T ++ I L + + P + C+ Q L +
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS-MTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 95 LSLGFN----SLYGEISKD----LNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNL 146
L N S+ E +D +N + L + S + E + ++ L
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL-TTIIESSLNVLEP-AEYRKMFDRL 378
Query: 147 SGFSGVFP-------------WMSLGN------MTNLV--SLSVGDNP----------FD 175
S VFP W + + L SL +
Sbjct: 379 S----VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 176 PTPFPDQVVKLNK-----------LNWLYLTNCSIDGQIPVEIG------NLTELINL-- 216
+ L++ + L +D IG E + L
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 217 -----------ELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANF- 264
++ ++ + I N L +L+ Y + P R + + +F
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNT--LQQLKFYKPYICDNDPKYERLVNAILDFL 552
Query: 265 -DASTNFLEGDLSEVRFLTNLVTLQLF 290
N + T+L+ + L
Sbjct: 553 PKIEENLICSK------YTDLLRIALM 573
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 4e-12
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 10/137 (7%)
Query: 185 KLNKLNWLYLTNCSIDGQIPVEI-GNLTELINLELSDNNISGEIPSEI-GNLVKLWRLEL 242
+L L+ L L++ ++ I E + L L+LS N++ + + +L L L L
Sbjct: 62 RLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLL 119
Query: 243 YNNQLSGKLPVG-LRNLTNLANFDASTNFL----EGDLSEVRFLTNLVTLQLFKNQFSGE 297
YNN + + ++ L S N + + + L L+ L L N+
Sbjct: 120 YNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178
Query: 298 VPAELGKFKKLVNLSLY 314
+L K V LY
Sbjct: 179 PLTDLQKLPAWVKNGLY 195
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 4e-09
Identities = 37/169 (21%), Positives = 66/169 (39%), Gaps = 25/169 (14%)
Query: 94 KLSLGFNSLYGEISKD--LNNCVKLQYLDLGNN----VFSGSFPEISSLNELQHLYLN-- 145
L L N+L + + L L L +N + S +F + L++L L+
Sbjct: 43 LLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF---VPVPNLRYLDLSSN 98
Query: 146 -LSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIP 204
L ++ L L + +N + + +L LYL+ I + P
Sbjct: 99 HLH----TLDEFLFSDLQALEVLLLYNNHIVVVD-RNAFEDMAQLQKLYLSQNQIS-RFP 152
Query: 205 VEI----GNLTELINLELSDNNISGEIPSEIGNLVKLWR--LELYNNQL 247
VE+ L +L+ L+LS N + +++ L + L L+NN L
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 6e-09
Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 10/118 (8%)
Query: 209 NLTELINLELSDNNISGEIPSEI-GNLVKLWRLELYNNQLSGKLPVG-LRNLTNLANFDA 266
LT L +L LS N+++ I SE + L L+L +N L L +L L
Sbjct: 62 RLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLL 119
Query: 267 STNFLEGDLSEV-RFLTNLVTLQLFKNQFSGEVPAE----LGKFKKLVNLSLYTNKLT 319
N + + L L L +NQ S P E K KL+ L L +NKL
Sbjct: 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 4e-08
Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 16/125 (12%)
Query: 203 IPVEIGNLTELINLELSDNNISGEIPSEI--GNLVKLWRLELYNNQLSGKLPVG-LRNLT 259
+P + + T L+LS NN+S + +E L L L L +N L+ + +
Sbjct: 33 VPQSLPSYTA--LLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVP 88
Query: 260 NLANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQFSGEVPAELGKFKKLVNL---SLY 314
NL D S+N L L E F L L L L+ N V F+ + L L
Sbjct: 89 NLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNA--FEDMAQLQKLYLS 144
Query: 315 TNKLT 319
N+++
Sbjct: 145 QNQIS 149
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 1e-11
Identities = 47/229 (20%), Positives = 67/229 (29%), Gaps = 20/229 (8%)
Query: 109 DLNNCVKLQYLDLGNNVFSG----SFPEISSLNELQHLYLNLSGFSGVFPWMSL-GNMTN 163
D+ + L+ L + + ++ LQ L L +G P L +
Sbjct: 63 DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPD 122
Query: 164 LVSLSVGDN---PFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSD 220
L L++ + D Q L L + ++ L L+LSD
Sbjct: 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182
Query: 221 NNISGEIPSEI----GNLVKLWRLELYNNQ---LSGKLPVGLRNLTNLANFDASTNFLEG 273
N GE L L L N SG L D S N L
Sbjct: 183 NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242
Query: 274 DLSEVRF--LTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTG 320
+ L +L L +VP L KL L L N+L
Sbjct: 243 AAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDR 288
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 1e-07
Identities = 51/292 (17%), Positives = 100/292 (34%), Gaps = 23/292 (7%)
Query: 191 WLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGK 250
W NC + + G + L+ D ++I + L RL + ++ +
Sbjct: 24 WSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSR 83
Query: 251 LPVG---LRNLTNLANFDASTNFLEGDLS---EVRFLTNLVTLQLFKNQFSGEVP--AEL 302
+ G + ++ L + G +L L L ++ AEL
Sbjct: 84 ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAEL 143
Query: 303 GKFKK--LVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTG--PIPPDMCKRG--TM 356
++ K L LS+ +++ + +D+S+N G + +C T+
Sbjct: 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL 203
Query: 357 RDLLMLQNKFT---GEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPE-VNIIDIALN 412
+ L + G A A + LQ +S+NSL+ A P +N ++++
Sbjct: 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263
Query: 413 QIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTG 464
++ L+L YNRL P + + + L N
Sbjct: 264 GLKQVPKGLPAKLSVLDL---SYNRLD-RNP-SPDELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 1e-05
Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 6/121 (4%)
Query: 72 LSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP 131
L R L L LQ L + G + G S V+LQ LDL +N +
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245
Query: 132 EI--SSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKL 189
++L L L+ +G V + L L + N D P PD++ ++ L
Sbjct: 246 APSCDWPSQLNSLNLSFTGLKQVPKGLP----AKLSVLDLSYNRLDRNPSPDELPQVGNL 301
Query: 190 N 190
+
Sbjct: 302 S 302
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 2e-11
Identities = 48/226 (21%), Positives = 85/226 (37%), Gaps = 31/226 (13%)
Query: 67 VQEIELSNRNLKGTLPFDSICQLQALHKLSL-GFNSLYGEISKDLNNCVKLQYLDLGNNV 125
+++IE+S ++ + D L LH++ + N+L + N LQYL + N
Sbjct: 56 LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115
Query: 126 FSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVK 185
P++ ++ LQ + L++ N+ ++ N F
Sbjct: 116 IK-HLPDVHKIHSLQKVLLDIQD--------------NINIHTIERNSFVGLS------- 153
Query: 186 LNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEI-GNLVKLWRLELYN 244
+ L+L I +I N T+L L LSDNN E+P+++ L++
Sbjct: 154 -FESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211
Query: 245 NQLSGKLPVG-LRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQL 289
++ LP L NL L L + L L+ L
Sbjct: 212 TRIH-SLPSYGLENLKKLRARSTYNLK---KLPTLEKLVALMEASL 253
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 3e-09
Identities = 44/230 (19%), Positives = 74/230 (32%), Gaps = 23/230 (10%)
Query: 92 LHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPE--ISSLNELQHLYLNLSGF 149
+L L + L+ +++ N S+L +L + + +
Sbjct: 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91
Query: 150 SGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQV-VKLNKLNWLYLT-NCSIDGQIPVEI 207
+ N+ NL L + + PD + + L + N +I I
Sbjct: 92 LLYINPEAFQNLPNLQYLLISNTGI--KHLPDVHKIHSLQKVLLDIQDNINIH-TIERNS 148
Query: 208 --GNLTELINLELSDNNISGEIPSEIGNLVKLWRLEL-YNNQLSGKLPVG-LRNLTNLAN 263
G E + L L+ N I EI + N +L L L NN L +LP +
Sbjct: 149 FVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVI 206
Query: 264 FDASTNFLEGDLSEVRF--LTNLVTLQLFKNQFSGEVPAELGKFKKLVNL 311
D S + L L L + + +L +KLV L
Sbjct: 207 LDISRTRIH-SLPSYGLENLKKLRARSTYNLK-------KLPTLEKLVAL 248
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 5e-06
Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 7/117 (5%)
Query: 209 NLTELINLELSDNNISGEIPSEI-GNLVKLWRLELYN-NQLSGKLPVGLRNLTNLANFDA 266
+L +E+S N++ I +++ NL KL + + N L P +NL NL
Sbjct: 52 GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 111
Query: 267 STNFLEGDLSEVRF--LTNLVTLQLFKNQFSGEVPAEL--GKFKKLVNLSLYTNKLT 319
S ++ L +V V L + N + G + V L L N +
Sbjct: 112 SNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 2e-11
Identities = 43/184 (23%), Positives = 63/184 (34%), Gaps = 17/184 (9%)
Query: 92 LHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLN---LSG 148
L L N LY L +L L+L + +L L L L+ L
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPVLGTLDLSHNQLQS 91
Query: 149 FSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQV-VKLNKLNWLYLTNCSIDGQIPVEI 207
+ + L L V N T P L +L LYL + +P +
Sbjct: 92 LPLLGQ-----TLPALTVLDVSFNRL--TSLPLGALRGLGELQELYLKGNELK-TLPPGL 143
Query: 208 -GNLTELINLELSDNNISGEIPSEI-GNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFD 265
+L L L++NN++ E+P+ + L L L L N L +P G L
Sbjct: 144 LTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAF 201
Query: 266 ASTN 269
N
Sbjct: 202 LHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 9e-09
Identities = 49/214 (22%), Positives = 77/214 (35%), Gaps = 37/214 (17%)
Query: 203 IPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLA 262
+P ++ + L LS+N + + + +L +L L +L+ KL V L L
Sbjct: 25 LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLG 80
Query: 263 NFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVN---LSLYTNKLT 319
D S N L+ + L L L + N+ + +P G + L L L N+L
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPL--GALRGLGELQELYLKGNELK 137
Query: 320 GALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLT 379
LP L + L + N T E+PA N L
Sbjct: 138 -TLPPGL-----LT-------PTPK-----------LEKLSLANNNLT-ELPAGLLNGLE 172
Query: 380 -LQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALN 412
L + NSL T+P G +G + + N
Sbjct: 173 NLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 3e-11
Identities = 51/253 (20%), Positives = 83/253 (32%), Gaps = 33/253 (13%)
Query: 53 CNFTGITCNSDS---------SFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLY 103
C + + ++LS L+ L S L L L +
Sbjct: 7 VPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ 65
Query: 104 GEISKDLNNCVKLQYLDLGNN----VFSGSFPEISSLNELQHLYLN---LSGF-SGVFPW 155
+ L L L N + G+F S L+ LQ L L+ +
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLALGAF---SGLSSLQKLVAVETNLASLENFPI-- 120
Query: 156 MSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEI-GNLTEL- 213
G++ L L+V N P+ L L L L++ I I L ++
Sbjct: 121 ---GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMP 176
Query: 214 ---INLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNF 270
++L+LS N ++ I ++L L L NQL LT+L TN
Sbjct: 177 LLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235
Query: 271 LEGDLSEVRFLTN 283
+ + +L+
Sbjct: 236 WDCSCPRIDYLSR 248
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 5e-10
Identities = 41/208 (19%), Positives = 70/208 (33%), Gaps = 27/208 (12%)
Query: 185 KLNKLNWLYLTNCSIDGQIPVEI-GNLTELINLELSDNNISGEIPSEI-GNLVKLWRLEL 242
+L L L+ C I I +L+ L L L+ N I + L L +L
Sbjct: 50 SFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA 107
Query: 243 YNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQFSGEVPA 300
L+ + +L L + + N ++ F LTNL L L N+ +
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYC 166
Query: 301 ELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLL 360
+ L + L L D+S N + I P K +++L
Sbjct: 167 --TDLRVLHQMPLLNLSL-----------------DLSLNPMNF-IQPGAFKEIRLKELA 206
Query: 361 MLQNKFTGEIPATYANCLTLQRFRVSNN 388
+ N+ + +LQ+ + N
Sbjct: 207 LDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 3e-09
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 9/115 (7%)
Query: 185 KLNKLNWLYLTNCSIDGQIPVEI-GNLTELINLELSDNNISGEIPSEI-GNLVKLWRLEL 242
KL + L+N I ++ + L L +L L N I+ E+P + L L L L
Sbjct: 54 PYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLL 111
Query: 243 YNNQLSGKLPVGL-RNLTNLANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQF 294
N+++ L V ++L NL N L+ +++ F L + T+ L +N F
Sbjct: 112 NANKIN-CLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQNPF 164
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 5e-07
Identities = 32/157 (20%), Positives = 49/157 (31%), Gaps = 35/157 (22%)
Query: 94 KLSLGFNSLYGEISKDLNNCVKLQYLDLGNN----VFSGSFPEISSLNELQHLYLNLSGF 149
++ L N++ + KL+ +DL NN + +F L L L L
Sbjct: 36 EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF---QGLRSLNSLVLY---- 88
Query: 150 SGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEI-G 208
GN + L F+ L L L L I + V+
Sbjct: 89 ---------GN--KITELPKSL--FE---------GLFSLQLLLLNANKI-NCLRVDAFQ 125
Query: 209 NLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNN 245
+L L L L DN + L + + L N
Sbjct: 126 DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 239 RLELYNNQLSGKLPVG-LRNLTNLANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQFS 295
+ L N + +P G L D S N + +L+ F L +L +L L+ N+ +
Sbjct: 36 EIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 296 GEVPAELGKFKKLVNL---SLYTNKLT 319
E+P F+ L +L L NK+
Sbjct: 94 -ELPK--SLFEGLFSLQLLLLNANKIN 117
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 9/112 (8%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNN--- 124
+ I+LSN + L D+ L++L+ L L N + LQ L L N
Sbjct: 59 RRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117
Query: 125 -VFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFD 175
+ +F L+ L L L + + + + + ++ + NPF
Sbjct: 118 CLRVDAF---QDLHNLNLLSLYDNKLQTI-AKGTFSPLRAIQTMHLAQNPFI 165
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 5e-09
Identities = 35/205 (17%), Positives = 75/205 (36%), Gaps = 16/205 (7%)
Query: 67 VQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDL-NNCVKLQYLDLGNN- 124
Q ++L +L+ T+P + L + ++ + + ++ N K+ ++++ N
Sbjct: 33 TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91
Query: 125 ----VFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFP 180
+ + L L+ L + +G + + L + DNP+ +
Sbjct: 92 NLTYIDPDAL---KELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148
Query: 181 DQVVKL-NKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEI--GNLVKL 237
+ L N+ L L N + N T+L + L+ N I + G
Sbjct: 149 NAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207
Query: 238 WRLELYNNQLSGKLPVG-LRNLTNL 261
L++ ++ LP L +L L
Sbjct: 208 SLLDVSQTSVT-ALPSKGLEHLKEL 231
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 12/164 (7%)
Query: 162 TNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLT-NCSIDGQIPVEI-GNLTELINLELS 219
+ +L + + P L ++ +Y++ + ++ Q+ NL+++ ++E+
Sbjct: 31 PSTQTLKLIETHLRTIP-SHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIR 88
Query: 220 DNNISGEIPSEI-GNLVKLWRLELYNNQLSGKLP--VGLRNLTNLANFDASTNFLEGDLS 276
+ I + L L L ++N L P + + + + N +
Sbjct: 89 NTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIP 147
Query: 277 EVRF--LTN-LVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNK 317
F L N +TL+L+ N F+ V KL + L NK
Sbjct: 148 VNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNK 190
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 1e-08
Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 13/140 (9%)
Query: 162 TNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIG---NLTELINLEL 218
L + +N F KL +L + +N I +E G + + + L
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD---IEEGAFEGASGVNEILL 88
Query: 219 SDNNISGEIPSEI-GNLVKLWRLELYNNQLSGKLPVGL-RNLTNLANFDASTNFLEGDLS 276
+ N + + ++ L L L L +N+++ + L+++ N + ++
Sbjct: 89 TSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITT-VA 145
Query: 277 EVRF--LTNLVTLQLFKNQF 294
F L +L TL L N F
Sbjct: 146 PGAFDTLHSLSTLNLLANPF 165
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 6e-08
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 14/124 (11%)
Query: 203 IPVEIGNLTELINLELSDNNISGEIPSEI-GNLVKLWRLELYNNQLSGKLPVG-LRNLTN 260
IP I T L L++N + + I L +L ++ NN+++ + G +
Sbjct: 26 IPEHIPQYTA--ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASG 82
Query: 261 LANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQFSGEVPAELGKFKKLVN---LSLYT 315
+ ++N LE ++ F L +L TL L N+ + V F L + LSLY
Sbjct: 83 VNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGN--DSFIGLSSVRLLSLYD 138
Query: 316 NKLT 319
N++T
Sbjct: 139 NQIT 142
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 15/115 (13%)
Query: 68 QEIELSNRNLKGTLP---FDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNN 124
++I SN + + F+ ++++ L N L K L+ L L +N
Sbjct: 60 RKINFSNNKIT-DIEEGAFE---GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN 115
Query: 125 ----VFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFD 175
V + SF L+ ++ L L + + V + + +L +L++ NPF+
Sbjct: 116 RITCVGNDSF---IGLSSVRLLSLYDNQITTV-APGAFDTLHSLSTLNLLANPFN 166
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 1e-08
Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 6/126 (4%)
Query: 196 NCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGL 255
+C V G T L L DN I+ P +L+ L L L +NQL LPVG+
Sbjct: 25 DCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGV 83
Query: 256 -RNLTNLANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQFSGEVPAELGKFKKLVNLS 312
+LT L D TN L L F L +L L + N+ + E+P + + L +L+
Sbjct: 84 FDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA 141
Query: 313 LYTNKL 318
L N+L
Sbjct: 142 LDQNQL 147
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 35/160 (21%), Positives = 51/160 (31%), Gaps = 40/160 (25%)
Query: 94 KLSLGFNSLYGEISKDLNNCVKLQYLDLGNN----VFSGSFPEISSLNELQHLYLNLSGF 149
L L N + ++ + L+ L LG+N + G F SL +L L L
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVF---DSLTQLTVLDLG---- 96
Query: 150 SGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQ---IPVE 206
N L L FD +L L L++ + +P
Sbjct: 97 ---------TNQ--LTVLPSA--VFD---------RLVHLKELFMCC----NKLTELPRG 130
Query: 207 IGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQ 246
I LT L +L L N + L L L+ N
Sbjct: 131 IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 2e-08
Identities = 43/129 (33%), Positives = 56/129 (43%), Gaps = 11/129 (8%)
Query: 196 NCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGL 255
C G+ V G + L+L N++ L L +L L N+L LP G+
Sbjct: 13 ECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGV 71
Query: 256 RN-LTNLANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQFSGEVPAELGKFKKLVNL- 311
N LT+L + STN L+ L F LT L L L NQ +P G F KL L
Sbjct: 72 FNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPD--GVFDKLTQLK 127
Query: 312 --SLYTNKL 318
LY N+L
Sbjct: 128 DLRLYQNQL 136
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 9e-08
Identities = 33/108 (30%), Positives = 44/108 (40%), Gaps = 12/108 (11%)
Query: 215 NLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGL-RNLTNLANFDASTNFLEG 273
L L N + +P E+ N L ++L NN++S L N+T L S N L
Sbjct: 35 ELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR- 91
Query: 274 DLSEVRF--LTNLVTLQLFKNQFSGEVPAELGKFKKLVNLS---LYTN 316
+ F L +L L L N S VP G F L LS + N
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDIS-VVPE--GAFNDLSALSHLAIGAN 136
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 44/136 (32%), Positives = 65/136 (47%), Gaps = 9/136 (6%)
Query: 186 LNKLNWLYLTNCSIDGQIPVEI-GNLTELINLELSDNNISGEIPSEI-GNLVKLWRLELY 243
L KL WL L + + + +LTEL L L++N ++ +P + +L +L +L L
Sbjct: 58 LTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLG 115
Query: 244 NNQLSGKLPVGL-RNLTNLANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQFSGEVPA 300
NQL LP G+ LT L +TN L+ + F LTNL TL L NQ
Sbjct: 116 GNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173
Query: 301 ELGKFKKLVNLSLYTN 316
+ KL ++L+ N
Sbjct: 174 AFDRLGKLQTITLFGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 1e-07
Identities = 40/127 (31%), Positives = 54/127 (42%), Gaps = 14/127 (11%)
Query: 203 IPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGL-RNLTNL 261
+P I TE L+L ++ + L KL L L NQL L G+ +LT L
Sbjct: 29 VPSGIPADTE--KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTEL 85
Query: 262 ANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQFSGEVPAELGKFKKLVN---LSLYTN 316
+ N L L F LT L L L NQ +P+ G F +L L L TN
Sbjct: 86 GTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPS--GVFDRLTKLKELRLNTN 141
Query: 317 KLTGALP 323
+L ++P
Sbjct: 142 QLQ-SIP 147
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 5e-05
Identities = 44/164 (26%), Positives = 57/164 (34%), Gaps = 23/164 (14%)
Query: 94 KLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPE--ISSLNELQHLYLNLSGF-- 149
KL L L KL +L+L N + L EL L L +
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLAS 97
Query: 150 --SGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVV-KLNKLNWLYLTNCSIDGQIP-V 205
GVF ++T L L +G N P V +L KL L L Q+ +
Sbjct: 98 LPLGVF-----DHLTQLDKLYLGGNQL--KSLPSGVFDRLTKLKELRLNT----NQLQSI 146
Query: 206 EIG---NLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQ 246
G LT L L LS N + L KL + L+ NQ
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 1e-07
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Query: 186 LNKLNWLYLTNCSID-GQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYN 244
+ L L NC + G+I L L L + + + + + L KL +LEL
Sbjct: 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSE 80
Query: 245 NQLSGKLPVGLRNLTNLANFDASTNFLE--GDLSEVRFLTNLVTLQLFKN 292
N++ G L + L NL + + S N L+ L ++ L L +L LF
Sbjct: 81 NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 3e-05
Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 3/108 (2%)
Query: 67 VQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVF 126
V+E+ L N + L LSL L +L KL+ L+L N
Sbjct: 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--ISVSNLPKLPKLKKLELSENRI 83
Query: 127 SGSFPEIS-SLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNP 173
G ++ L L HL L+ + + L + L SL + +
Sbjct: 84 FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 1e-07
Identities = 48/148 (32%), Positives = 61/148 (41%), Gaps = 22/148 (14%)
Query: 185 KLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIG---NLVKLWRLE 241
+LN ++ + N I I L + L L N + +I L L L
Sbjct: 39 ELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLH-----DISALKELTNLTYLI 91
Query: 242 LYNNQLSGKLPVGL-RNLTNLANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQFSGEV 298
L NQL LP G+ LTNL N L+ L + F LTNL L L NQ +
Sbjct: 92 LTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SL 148
Query: 299 PAELGKFKKLVN---LSLYTNKLTGALP 323
P G F KL N L L N+L +LP
Sbjct: 149 PK--GVFDKLTNLTELDLSYNQLQ-SLP 173
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 43/183 (23%), Positives = 74/183 (40%), Gaps = 14/183 (7%)
Query: 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFS 127
+ L +++ + + + + + + S+ G + ++YL LG N
Sbjct: 22 IKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-----IQYLPNVRYLALGGNKLH 76
Query: 128 GSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVV-KL 186
+ L L +L L + + P +TNL L + +N PD V KL
Sbjct: 77 -DISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVLVENQL--QSLPDGVFDKL 132
Query: 187 NKLNWLYLTNCSIDGQIPVEI-GNLTELINLELSDNNISGEIPSEI-GNLVKLWRLELYN 244
L +L L + + +P + LT L L+LS N + +P + L +L L LY
Sbjct: 133 TNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQ 190
Query: 245 NQL 247
NQL
Sbjct: 191 NQL 193
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 2e-07
Identities = 38/119 (31%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 211 TELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGL-RNLTNLANFDASTN 269
+ L+L N +S L KL L L +N+L LP G+ + L NL + N
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95
Query: 270 FLEGDLSEVRF--LTNLVTLQLFKNQFSGEVPAELGKFKKLVN---LSLYTNKLTGALP 323
L+ L F L NL L+L +NQ +P F L LSL N+L +LP
Sbjct: 96 KLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPP--RVFDSLTKLTYLSLGYNELQ-SLP 149
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 8e-06
Identities = 47/181 (25%), Positives = 69/181 (38%), Gaps = 19/181 (10%)
Query: 74 NRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDL-NNCVKLQYLDLGNNVFSGSFPE 132
N +LP + +L L L L N L + + L+ L + +N + P
Sbjct: 45 QSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQ-ALPI 102
Query: 133 --ISSLNELQHLYLNLSGFS----GVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQV-VK 185
L L L L+ + VF ++T L LS+G N P V K
Sbjct: 103 GVFDQLVNLAELRLDRNQLKSLPPRVFD-----SLTKLTYLSLGYNEL--QSLPKGVFDK 155
Query: 186 LNKLNWLYLTNCSIDGQIPVEI-GNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYN 244
L L L L N + ++P LTEL L+L +N + +L KL L+L
Sbjct: 156 LTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214
Query: 245 N 245
N
Sbjct: 215 N 215
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 5e-07
Identities = 33/145 (22%), Positives = 54/145 (37%), Gaps = 20/145 (13%)
Query: 185 KLNKLNWLYLTNCSIDGQIPVEIGNLTELINLE---LSDNNISGEIPSEIGNLVKLWRLE 241
L L L+ +I+ +I +L+ + NL L N I +I + L L
Sbjct: 46 TLKACKHLALSTNNIE-----KISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELW 99
Query: 242 LYNNQLSGKLPVGLRNLTNLANFDASTNFLE--GDLSEVRFLTNLVTLQLFKNQFSGEVP 299
+ NQ++ L G+ L NL S N + G++ ++ L L L L N +
Sbjct: 100 ISYNQIA-SLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157
Query: 300 AELGKFKKLVNLSLYTNKLTGALPQ 324
S Y ++ LP
Sbjct: 158 EN-------NATSEYRIEVVKRLPN 175
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 8e-07
Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 32/121 (26%)
Query: 203 IPVEIGNLTELINLELSDNNISGEIPSEI-GNLVKLWRLELYNNQLSGKLPVGLRNLTNL 261
IP +I T L L+DN + + G L L +LEL NQL+ +
Sbjct: 23 IPRDIPLHTT--ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNA------ 73
Query: 262 ANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVN---LSLYTNKL 318
F+ +++ LQL +N+ E+ F L L+LY N++
Sbjct: 74 --FEG--------------ASHIQELQLGENKIK-EISN--KMFLGLHQLKTLNLYDNQI 114
Query: 319 T 319
+
Sbjct: 115 S 115
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 52/299 (17%), Positives = 99/299 (33%), Gaps = 52/299 (17%)
Query: 67 VQEIELSNRNLKGTLPFDSICQ-LQALHKLSLGFNSLYGE----ISKDLNNCVKLQYLDL 121
+Q +++ L + + LQ + L L IS L L L+L
Sbjct: 5 IQSLDIQCEEL-SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63
Query: 122 GNNVFSGSFPEI------SSLNELQHLYL---NLSGFSGVFPWMSLGNMTNLVSLSVGDN 172
+N + ++Q L L L+G +L + L L + DN
Sbjct: 64 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123
Query: 173 PFDPTPFPDQVVKL---------NKLNWLYLTNCSIDGQIPVEIG----NLTELINLELS 219
D ++L +L L L CS+ + + L +S
Sbjct: 124 LLG-----DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178
Query: 220 DNNISGEIPSEIG-----NLVKLWRLELYNNQLSGK----LPVGLRNLTNLANFDASTNF 270
+N+I+ + + +L L+L + ++ L + + +L +N
Sbjct: 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238
Query: 271 LEGD----LSEVRFLTN--LVTLQLFKNQFSGEVPAELGKF----KKLVNLSLYTNKLT 319
L L + L TL +++ + + +L + + L LSL N+L
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 52/275 (18%), Positives = 93/275 (33%), Gaps = 50/275 (18%)
Query: 92 LHKLSLGFNSL----YGEISKDLNNCVKLQYLDLGNNVFSGS-FPEISSLNE-----LQH 141
+ KLSL L G +S L LQ L L +N+ + + L+
Sbjct: 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEK 146
Query: 142 LYL---NLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKL---------NKL 189
L L +LS S L + L+V +N + + V++ +L
Sbjct: 147 LQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN-----EAGVRVLCQGLKDSPCQL 201
Query: 190 NWLYLTNCSIDGQIPVEIG----NLTELINLELSDNNISGEIPSEIGNLVK-----LWRL 240
L L +C + ++ + L L L N + +E+ + L L
Sbjct: 202 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261
Query: 241 ELYNNQLSGK----LPVGLRNLTNLANFDASTNFLEGD----LSEVRFLTN--LVTLQLF 290
++ ++ K L LR +L + N L + L E L +L +
Sbjct: 262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321
Query: 291 KNQFSGEVPAELG----KFKKLVNLSLYTNKLTGA 321
F+ + + + L+ L + N+L A
Sbjct: 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 2e-06
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 1/93 (1%)
Query: 203 IPVEIGNLTELINLELSDNNISGEIPSE-IGNLVKLWRLELYNNQLSGKLPVGLRNLTNL 261
+ L L + + + + L +L L + + L P L
Sbjct: 23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82
Query: 262 ANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQF 294
+ + S N LE + +L L L N
Sbjct: 83 SRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 5e-04
Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 2/109 (1%)
Query: 113 CVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDN 172
L + S + L LY+ L + L +L++ +
Sbjct: 7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66
Query: 173 PFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDN 221
PD +L+ L L+ +++ + + L L LS N
Sbjct: 67 GLRFVA-PDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGN 113
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 4e-06
Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 29/138 (21%)
Query: 185 KLNKLNWLYLTNCSIDGQIPVEIGNLTELINLE---LSDNNISGEIPSEIGNLVKLWRLE 241
+ + L L N + G E LE + ++ I + + L KL +LE
Sbjct: 15 TPSDVKELVLDNSRSN--EGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLE 70
Query: 242 LYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAE 301
L +N++SG L V NL + + S N ++ DLS + L L
Sbjct: 71 LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK-DLSTIEPLKKL----------------- 112
Query: 302 LGKFKKLVNLSLYTNKLT 319
+ L +L L+ ++T
Sbjct: 113 ----ENLKSLDLFNCEVT 126
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 4e-05
Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 3/114 (2%)
Query: 61 NSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLD 120
N S V+E+ L N + + L LS L I+ +L KL+ L+
Sbjct: 13 NRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSIA-NLPKLNKLKKLE 70
Query: 121 LGNNVFSGSFPEIS-SLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNP 173
L +N SG ++ L HL L+ + + L + NL SL + +
Sbjct: 71 LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Query: 160 NMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLE-- 217
+++ L + ++ + + +L +L N + I NL +L L+
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-----SIANLPKLNKLKKL 69
Query: 218 -LSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVG-LRNLTNL 261
LSDN +SG + L L L N++ + L+ L NL
Sbjct: 70 ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENL 115
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 25/135 (18%)
Query: 185 KLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYN 244
+ L L I I L + ++ SDN I ++ L +L L + N
Sbjct: 17 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNN 73
Query: 245 NQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGK 304
N++ + L +L + N L +L ++ L +L
Sbjct: 74 NRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASL-------------------- 112
Query: 305 FKKLVNLSLYTNKLT 319
K L L + N +T
Sbjct: 113 -KSLTYLCILRNPVT 126
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 46/283 (16%), Positives = 80/283 (28%), Gaps = 56/283 (19%)
Query: 92 LHKLSLGFNSLYGE----ISKDLNNCVKLQYLDLGNNVFS-----------GSFPEISSL 136
+ SL +++ E + L ++ + L N S ++
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 137 NELQHLYLNLSGFSGVFPWMSLGNM----TNLVSLSVGDNPFDPT---PFPDQVVKLNKL 189
++ L L ++ + DN F PT P D + K L
Sbjct: 66 E-FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124
Query: 190 NWLYLTNCSI-------------DGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVK 236
LYL N + + + + N L ++ N + E +
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184
Query: 237 ----LWRLELYNNQLSGK-----LPVGLRNLTNLANFDASTNFL--EG--DLSEV-RFLT 282
L +++ N + + L GL L D N G L+ +
Sbjct: 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244
Query: 283 NLVTLQLFKNQFSGEVPAELGK------FKKLVNLSLYTNKLT 319
NL L L S A + L L L N++
Sbjct: 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 42.6 bits (99), Expect = 2e-04
Identities = 26/186 (13%), Positives = 52/186 (27%), Gaps = 19/186 (10%)
Query: 162 TNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDN 221
+ + D L+ + L + + L +LE+
Sbjct: 144 LFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISG 203
Query: 222 NISGEIPSEIG--NLVKLWRLELY---NNQLSGKLPVGL------RNLTNLANFDASTNF 270
+ + +I +L L +L LY + NL
Sbjct: 204 GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263
Query: 271 LEGD----LSEVRFLTNLVTLQLFKNQFSGE----VPAELGKFKKLVNLSLYTNKLTGAL 322
+ E L L T+ + + E + + K K L +++ N L+ +
Sbjct: 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323
Query: 323 PQELGS 328
+EL
Sbjct: 324 KKELQK 329
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 3e-04
Identities = 39/125 (31%), Positives = 48/125 (38%), Gaps = 29/125 (23%)
Query: 195 TNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVG 254
+CS V G T L L DN I+ P L +L RL+L NNQL+ LP G
Sbjct: 14 VDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAG 72
Query: 255 LRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKF---KKLVNL 311
+ FD LT L L L NQ +P G F K L ++
Sbjct: 73 V--------FDK--------------LTQLTQLSLNDNQLKS-IPR--GAFDNLKSLTHI 107
Query: 312 SLYTN 316
L N
Sbjct: 108 WLLNN 112
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 3e-04
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 239 RLELYNNQLSGKLPVGL-RNLTNLANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQFS 295
RLEL +N+L LP G+ LT L S N ++ L + F LT L L L +N+
Sbjct: 32 RLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ 89
Query: 296 GEVPAELGKFKKLVNL---SLYTNKL 318
+P G F KL L +L TN+L
Sbjct: 90 -SLPN--GVFDKLTQLKELALDTNQL 112
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 4e-04
Identities = 34/125 (27%), Positives = 48/125 (38%), Gaps = 29/125 (23%)
Query: 195 TNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVG 254
NC V G T+ L L++N I+ P +LV L +L +N+L+ +P G
Sbjct: 17 VNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTG 75
Query: 255 LRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKF---KKLVNL 311
+ FD LT L L L N +P G F K L ++
Sbjct: 76 V--------FDK--------------LTQLTQLDLNDNHLKS-IPR--GAFDNLKSLTHI 110
Query: 312 SLYTN 316
LY N
Sbjct: 111 YLYNN 115
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 471 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 100.0 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 100.0 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.97 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.97 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.97 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.97 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.97 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.96 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.96 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.96 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.96 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.96 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.96 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.96 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.95 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.95 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.95 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.95 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.95 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.95 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.95 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.95 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.94 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.94 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.94 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.94 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.93 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.93 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.93 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.92 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.92 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.92 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.92 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.92 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.92 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.91 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.91 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.91 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.9 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.9 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.89 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.89 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.89 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.89 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.89 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.88 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.88 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.86 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.85 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.85 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.84 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.83 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.82 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.81 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.81 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.81 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.8 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.8 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.79 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.79 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.78 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.78 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.78 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.78 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.77 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.77 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.77 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.76 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.73 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.72 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.72 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.7 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.7 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.7 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.69 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.68 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.67 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.67 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.66 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.66 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.65 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.65 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.65 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.62 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.6 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.6 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.59 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.58 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.58 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.57 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.55 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.54 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.51 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.47 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.45 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.44 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.42 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.42 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.4 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.37 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.35 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.21 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.18 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.08 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 99.05 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 99.01 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.01 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.78 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.68 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.68 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.52 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.2 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.01 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.77 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.62 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.64 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.33 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-62 Score=514.14 Aligned_cols=447 Identities=30% Similarity=0.451 Sum_probs=331.3
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceeeceEeCCCCCCEEEEEcCCCCCccc---cCc-----------
Q 012103 18 TCINSDELQILLNLKTSLKDSKSSIFSSWVSNNHFCNFTGITCNSDSSFVQEIELSNRNLKGT---LPF----------- 83 (471)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~gv~c~~~~~~v~~L~L~~~~l~g~---l~~----------- 83 (471)
+++.++|++||++||+++.+|. .+++|..+.+||.|.||+|+ .++|++|+|++..+.|. +++
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~--~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l 82 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN--LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 82 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT--SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEE
T ss_pred ccCCHHHHHHHHHHHhhCCCcc--cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCccccc
Confidence 4456789999999999998764 78999988999999999998 68999999999999886 442
Q ss_pred -----------ccccCCCCCcEEeCCCCCCCccccc--cccCCCCCCEEeCCCCcCCccCC-CC-CCCCCCCEEEccCCC
Q 012103 84 -----------DSICQLQALHKLSLGFNSLYGEISK--DLNNCVKLQYLDLGNNVFSGSFP-EI-SSLNELQHLYLNLSG 148 (471)
Q Consensus 84 -----------~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~-~l-~~l~~L~~L~l~~n~ 148 (471)
..++.+++|++|++++|.+.+.+|. .++++++|++|++++|.+.+..+ .+ .++++|++|++++|.
T Consensus 83 ~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 162 (768)
T 3rgz_A 83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162 (768)
T ss_dssp ECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC
T ss_pred CCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc
Confidence 3488899999999999999988888 88999999999999998887666 33 566666666666666
Q ss_pred CcccCCc------------------------ccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCC
Q 012103 149 FSGVFPW------------------------MSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIP 204 (471)
Q Consensus 149 l~~~~~~------------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 204 (471)
+++..+. ..+..+++|++|++++|.+. ..+|. +..+++|++|++++|.+++.+|
T Consensus 163 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~-l~~l~~L~~L~Ls~n~l~~~~~ 240 (768)
T 3rgz_A 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFS-TGIPF-LGDCSALQHLDISGNKLSGDFS 240 (768)
T ss_dssp CEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCC-SCCCB-CTTCCSCCEEECCSSCCCSCHH
T ss_pred cCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCC-CCCcc-cccCCCCCEEECcCCcCCCccc
Confidence 5543320 01245566666666666662 23333 6666666666666666665555
Q ss_pred ccccCCCCCcEEEcccCcCC----------------------CcCCccccCC-CCCCeEeeccccccccCCccccCCCCC
Q 012103 205 VEIGNLTELINLELSDNNIS----------------------GEIPSEIGNL-VKLWRLELYNNQLSGKLPVGLRNLTNL 261 (471)
Q Consensus 205 ~~l~~l~~L~~L~L~~n~l~----------------------~~~p~~~~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L 261 (471)
..+..+++|++|++++|.+. +.+|..+... ++|++|++++|.+++.+|..+.++++|
T Consensus 241 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 320 (768)
T 3rgz_A 241 RAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320 (768)
T ss_dssp HHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTC
T ss_pred HHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCc
Confidence 55555555555555555444 3455555443 667777777777766667777777777
Q ss_pred CEEeCCCCcCccccc--cCCCCCCCCEEEccCCcCccccchhccC---------------------------CCCCCEEE
Q 012103 262 ANFDASTNFLEGDLS--EVRFLTNLVTLQLFKNQFSGEVPAELGK---------------------------FKKLVNLS 312 (471)
Q Consensus 262 ~~L~l~~n~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~l~~---------------------------~~~L~~L~ 312 (471)
++|++++|.+.+.++ .+..+++|++|++++|.+++.+|..+.. +++|++|+
T Consensus 321 ~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~ 400 (768)
T 3rgz_A 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400 (768)
T ss_dssp CEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEE
T ss_pred cEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEE
Confidence 777777777765555 3666666777777666666555544433 34566666
Q ss_pred cccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcc
Q 012103 313 LYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKG 392 (471)
Q Consensus 313 L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~ 392 (471)
+++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|++++
T Consensus 401 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 480 (768)
T 3rgz_A 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480 (768)
T ss_dssp CCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC
Confidence 66666666666677777777777777777777777777777888888888888887788888888888888888888888
Q ss_pred cccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCcccCCCCC
Q 012103 393 TVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470 (471)
Q Consensus 393 ~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip~~~ 470 (471)
.+|..+..+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|..+..+++|+.|++++|+++|.||.++
T Consensus 481 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 888888888888888888888888888888888888888888888888888888888888888888888888888765
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-57 Score=467.61 Aligned_cols=430 Identities=20% Similarity=0.271 Sum_probs=379.6
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCC-------CCCCCCCCCcee---eceEeCCCCCCEEEEEcCCCCCccccCcccccC
Q 012103 19 CINSDELQILLNLKTSLKDSKSSIF-------SSWVSNNHFCNF---TGITCNSDSSFVQEIELSNRNLKGTLPFDSICQ 88 (471)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~~~~-------~~w~~~~~~c~~---~gv~c~~~~~~v~~L~L~~~~l~g~l~~~~~~~ 88 (471)
+...+|++||.++|.++.++.|... .+|..+.++|.| .||.|+. .++|++|+|+++++.|.+|+. +++
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~g~lp~~-l~~ 103 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGASGRVPDA-IGQ 103 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT-TCCEEEEECTTSCCEEEECGG-GGG
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC-CCCEEEEEecCcccCCcCChH-Hhc
Confidence 3345799999999999987766543 389999999999 9999987 589999999999999999976 999
Q ss_pred CCCCcEEeCCCCCC------------------------------------------------------------------
Q 012103 89 LQALHKLSLGFNSL------------------------------------------------------------------ 102 (471)
Q Consensus 89 l~~L~~L~l~~~~~------------------------------------------------------------------ 102 (471)
+++|++|++++|.+
T Consensus 104 L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l 183 (636)
T 4eco_A 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL 183 (636)
T ss_dssp CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCC
T ss_pred CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccch
Confidence 99999999999843
Q ss_pred ------------CccccccccCCCCCCEEeCCCCcCCc------------------cCCCCC--CCCCCCEEEccCCCCc
Q 012103 103 ------------YGEISKDLNNCVKLQYLDLGNNVFSG------------------SFPEIS--SLNELQHLYLNLSGFS 150 (471)
Q Consensus 103 ------------~~~~~~~~~~l~~L~~L~l~~n~l~~------------------~~~~l~--~l~~L~~L~l~~n~l~ 150 (471)
++ +|..++++++|++|++++|.+++ .+..+. ++++|++|++++|.+.
T Consensus 184 ~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~ 262 (636)
T 4eco_A 184 KDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL 262 (636)
T ss_dssp CTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC
T ss_pred hhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC
Confidence 34 78889999999999999999999 444888 9999999999999999
Q ss_pred ccCCcccccCCCCCcEEEccCCC-CCCC-CCCccccCC------CCCCEEEcccccCcccCCc--cccCCCCCcEEEccc
Q 012103 151 GVFPWMSLGNMTNLVSLSVGDNP-FDPT-PFPDQVVKL------NKLNWLYLTNCSIDGQIPV--EIGNLTELINLELSD 220 (471)
Q Consensus 151 ~~~~~~~~~~l~~L~~L~l~~n~-~~~~-~~~~~l~~l------~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~L~~ 220 (471)
+..| ..++++++|++|++++|+ + .+ .+|..++.+ ++|++|++++|.++ .+|. .+..+++|+.|++++
T Consensus 263 ~~~p-~~l~~l~~L~~L~Ls~n~~l-~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~ 339 (636)
T 4eco_A 263 TKLP-TFLKALPEMQLINVACNRGI-SGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLY 339 (636)
T ss_dssp SSCC-TTTTTCSSCCEEECTTCTTS-CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCS
T ss_pred ccCh-HHHhcCCCCCEEECcCCCCC-ccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcC
Confidence 9999 899999999999999998 7 34 578877776 99999999999999 8888 899999999999999
Q ss_pred CcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCC-CCEEeCCCCcCccccccCCCCC--CCCEEEccCCcCccc
Q 012103 221 NNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTN-LANFDASTNFLEGDLSEVRFLT--NLVTLQLFKNQFSGE 297 (471)
Q Consensus 221 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~~--~L~~L~l~~n~l~~~ 297 (471)
|.+.|.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++..+..+...+ +|++|++++|.+++.
T Consensus 340 N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~ 417 (636)
T 4eco_A 340 NQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSV 417 (636)
T ss_dssp CCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred CcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCc
Confidence 99998999 8999999999999999999 78888999999 9999999999984444555544 899999999999998
Q ss_pred cchhcc-------CCCCCCEEEcccCcCcccCch-hhcCCCCCCEEeccCCcccccCchhhcCCC--------CCceeec
Q 012103 298 VPAELG-------KFKKLVNLSLYTNKLTGALPQ-ELGSWAEFDFIDVSENLLTGPIPPDMCKRG--------TMRDLLM 361 (471)
Q Consensus 298 ~~~~l~-------~~~~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~--------~L~~L~l 361 (471)
.|..+. .+++|++|++++|.++ .+|. .+..+++|++|++++|.++ .+|....... +|+.|++
T Consensus 418 ~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~L 495 (636)
T 4eco_A 418 DGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDL 495 (636)
T ss_dssp TTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEEC
T ss_pred chhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEEC
Confidence 888887 7789999999999999 4554 4566899999999999998 7776554322 8999999
Q ss_pred cCCccccccchhhh--cCCCCcEEEccCCcCcccccccccCCCCCCEeec------ccCccccccchhhhccCCCCeeeC
Q 012103 362 LQNKFTGEIPATYA--NCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDI------ALNQIEGPITKDIENAKALNLLFA 433 (471)
Q Consensus 362 ~~n~~~~~~~~~~~--~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l------s~n~~~~~~~~~~~~l~~L~~L~l 433 (471)
++|+++ .+|..+. .+++|+.|++++|++++ +|..+..+++|++|++ ++|++.+.+|..+.++++|+.|++
T Consensus 496 s~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~L 573 (636)
T 4eco_A 496 RFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573 (636)
T ss_dssp CSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred cCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEEC
Confidence 999999 7888776 99999999999999996 8999999999999999 568889999999999999999999
Q ss_pred CCCcCcccchhhhhcCCCCCEEeccCCcCc
Q 012103 434 EYNRLSGELPEEISKATSLVVIKLNNNQLT 463 (471)
Q Consensus 434 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~~s 463 (471)
++|++ +.+|..+. ++|+.|++++|++.
T Consensus 574 s~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 574 GSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred CCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 99999 58898866 79999999999887
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-54 Score=458.41 Aligned_cols=401 Identities=31% Similarity=0.489 Sum_probs=290.1
Q ss_pred CCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-------------
Q 012103 65 SFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP------------- 131 (471)
Q Consensus 65 ~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------- 131 (471)
..+++|+++++.+.|.+|.. +..+++|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|
T Consensus 223 ~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L 299 (768)
T 3rgz_A 223 SALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299 (768)
T ss_dssp CSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEE
T ss_pred CCCCEEECcCCcCCCcccHH-HhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEE
Confidence 45666777776666555543 666666666666666655544432 44444555555444444433
Q ss_pred -------------CCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCC-CCCEEEcccc
Q 012103 132 -------------EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLN-KLNWLYLTNC 197 (471)
Q Consensus 132 -------------~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~-~L~~L~l~~n 197 (471)
.+.++++|++|++++|.+++..|...+.++++|++|++++|.+ .+.+|..+..++ +|++|++++|
T Consensus 300 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l-~~~~p~~l~~l~~~L~~L~Ls~N 378 (768)
T 3rgz_A 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF-SGELPESLTNLSASLLTLDLSSN 378 (768)
T ss_dssp ECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE-EECCCTTHHHHTTTCSEEECCSS
T ss_pred ECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc-CccccHHHHhhhcCCcEEEccCC
Confidence 3444444444444444444444422244444455555544444 223344444443 4555555555
Q ss_pred cCcccCCccccC--CCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCcccc
Q 012103 198 SIDGQIPVEIGN--LTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDL 275 (471)
Q Consensus 198 ~l~~~~~~~l~~--l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 275 (471)
.+.+.+|..+.. +++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..+..+++|++|++++|.+.+..
T Consensus 379 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 458 (768)
T 3rgz_A 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458 (768)
T ss_dssp EEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcC
Confidence 555444444444 556777777777777777777777788888888888887777777888888888888888887766
Q ss_pred c-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCC
Q 012103 276 S-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRG 354 (471)
Q Consensus 276 ~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~ 354 (471)
+ .+..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|.+++.+|..++.++
T Consensus 459 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 538 (768)
T 3rgz_A 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT
T ss_pred CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence 6 677778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCceeeccCCccccccchhh------------------------------------------------------------
Q 012103 355 TMRDLLMLQNKFTGEIPATY------------------------------------------------------------ 374 (471)
Q Consensus 355 ~L~~L~l~~n~~~~~~~~~~------------------------------------------------------------ 374 (471)
+|+.|++++|++.+.+|..+
T Consensus 539 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 618 (768)
T 3rgz_A 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618 (768)
T ss_dssp TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence 88888888888776666543
Q ss_pred ----------hcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchh
Q 012103 375 ----------ANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPE 444 (471)
Q Consensus 375 ----------~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 444 (471)
..+++|+.|++++|+++|.+|..++.++.|+.|++++|+++|.+|..++++++|+.|++++|+++|.+|+
T Consensus 619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp EEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred eecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence 3356788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCEEeccCCcCcccCCCC
Q 012103 445 EISKATSLVVIKLNNNQLTGKIPAS 469 (471)
Q Consensus 445 ~l~~l~~L~~L~l~~n~~sg~ip~~ 469 (471)
.+..++.|++|++++|+++|.||+.
T Consensus 699 ~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 699 AMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp GGGGCCCCSEEECCSSEEEEECCSS
T ss_pred HHhCCCCCCEEECcCCcccccCCCc
Confidence 9999999999999999999999974
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-54 Score=454.63 Aligned_cols=424 Identities=21% Similarity=0.277 Sum_probs=356.1
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCC-----CC--cee------------eceEeCCCCCCEEEEEcCCCCCcc
Q 012103 19 CINSDELQILLNLKTSLKDSKSSIFSSWVSNN-----HF--CNF------------TGITCNSDSSFVQEIELSNRNLKG 79 (471)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~-----~~--c~~------------~gv~c~~~~~~v~~L~L~~~~l~g 79 (471)
++..+|++||++||+++.+| +|+.+. ++ |.| .||.|+. .++|++|+|+++++.|
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G 337 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGK------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKG 337 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGG------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEE
T ss_pred ccchHHHHHHHHHHHHcCCC------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCC
Confidence 34568999999999999776 564332 45 999 9999997 7899999999999999
Q ss_pred ccCcccccCCCCCcEEeC-CCCCCCcc-----------------------------------------------------
Q 012103 80 TLPFDSICQLQALHKLSL-GFNSLYGE----------------------------------------------------- 105 (471)
Q Consensus 80 ~l~~~~~~~l~~L~~L~l-~~~~~~~~----------------------------------------------------- 105 (471)
.+|+. ++++++|++|++ ++|.+.|.
T Consensus 338 ~ip~~-l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 338 RVPDA-IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EECGG-GGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred cCchH-HhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 99976 999999999999 77654333
Q ss_pred -----------------------ccccccCCCCCCEEeCCCCcCCc------------------cCCCCC--CCCCCCEE
Q 012103 106 -----------------------ISKDLNNCVKLQYLDLGNNVFSG------------------SFPEIS--SLNELQHL 142 (471)
Q Consensus 106 -----------------------~~~~~~~l~~L~~L~l~~n~l~~------------------~~~~l~--~l~~L~~L 142 (471)
+|..++++++|++|+|++|.+++ .++.+. ++++|++|
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L 496 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred cccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEE
Confidence 77888999999999999999998 344766 89999999
Q ss_pred EccCCCCcccCCcccccCCCCCcEEEccCCC-CCCC-CCCccccCC-------CCCCEEEcccccCcccCCc--cccCCC
Q 012103 143 YLNLSGFSGVFPWMSLGNMTNLVSLSVGDNP-FDPT-PFPDQVVKL-------NKLNWLYLTNCSIDGQIPV--EIGNLT 211 (471)
Q Consensus 143 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-~~~~-~~~~~l~~l-------~~L~~L~l~~n~l~~~~~~--~l~~l~ 211 (471)
++++|.+.+..| ..+.++++|++|++++|+ + .+ .+|..+..+ ++|++|++++|.+. .+|. .+..++
T Consensus 497 ~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls~N~~l-sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~ 573 (876)
T 4ecn_A 497 ELYNCPNMTQLP-DFLYDLPELQSLNIACNRGI-SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMV 573 (876)
T ss_dssp EEESCTTCCSCC-GGGGGCSSCCEEECTTCTTS-CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCT
T ss_pred ECcCCCCCccCh-HHHhCCCCCCEEECcCCCCc-ccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCC
Confidence 999999999888 889999999999999998 6 33 466655544 49999999999999 7888 899999
Q ss_pred CCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCC-CCEEeCCCCcCccccccCCCCC--CCCEEE
Q 012103 212 ELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTN-LANFDASTNFLEGDLSEVRFLT--NLVTLQ 288 (471)
Q Consensus 212 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~~--~L~~L~ 288 (471)
+|+.|++++|.+. .+| .++.+++|++|++++|.+. .+|..+..+++ |++|++++|.+...+..+...+ +|+.|+
T Consensus 574 ~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~ 650 (876)
T 4ecn_A 574 KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVD 650 (876)
T ss_dssp TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEE
T ss_pred CCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEE
Confidence 9999999999998 788 7889999999999999998 78888888888 9999999999884443555544 499999
Q ss_pred ccCCcCccccchhc---c--CCCCCCEEEcccCcCcccCchhh-cCCCCCCEEeccCCcccccCchhhcCCC--------
Q 012103 289 LFKNQFSGEVPAEL---G--KFKKLVNLSLYTNKLTGALPQEL-GSWAEFDFIDVSENLLTGPIPPDMCKRG-------- 354 (471)
Q Consensus 289 l~~n~l~~~~~~~l---~--~~~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~p~~~~~~~-------- 354 (471)
+++|.+.+.+|... . ..++|+.|++++|.+. .+|..+ ..+++|+.|++++|.++ .+|..+....
T Consensus 651 Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~ 728 (876)
T 4ecn_A 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTY 728 (876)
T ss_dssp CCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGG
T ss_pred CcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccC
Confidence 99999987665332 2 3358999999999998 566654 47889999999999998 7777665433
Q ss_pred CCceeeccCCccccccchhhh--cCCCCcEEEccCCcCcccccccccCCCCCCEeeccc------CccccccchhhhccC
Q 012103 355 TMRDLLMLQNKFTGEIPATYA--NCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIAL------NQIEGPITKDIENAK 426 (471)
Q Consensus 355 ~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~------n~~~~~~~~~~~~l~ 426 (471)
+|+.|++++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|++++ |++.+.+|..+.+++
T Consensus 729 ~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~ 806 (876)
T 4ecn_A 729 LLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806 (876)
T ss_dssp GCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred CccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence 8999999999998 7788776 89999999999999996 788888999999999976 778888999999999
Q ss_pred CCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCc
Q 012103 427 ALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463 (471)
Q Consensus 427 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~s 463 (471)
+|+.|++++|++ +.+|..+. ++|+.|+|++|++.
T Consensus 807 ~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 807 SLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp SCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTC
T ss_pred CCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCC
Confidence 999999999999 68888866 68999999999887
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-49 Score=405.75 Aligned_cols=400 Identities=20% Similarity=0.237 Sum_probs=255.1
Q ss_pred CCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEE
Q 012103 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHL 142 (471)
Q Consensus 64 ~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L 142 (471)
+..++.|+++++.+++ +++..|.++++|++|++++|.+.+..|.+|.++++|++|++++|.+++..+ .+.++++|++|
T Consensus 32 ~~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110 (606)
T ss_dssp CTTCCEEECTTCCCSE-ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred CCcCcEEEccCCccCc-CChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence 4578999999999994 444559999999999999999998889999999999999999999998877 88999999999
Q ss_pred EccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCc--EEEccc
Q 012103 143 YLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELI--NLELSD 220 (471)
Q Consensus 143 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~--~L~L~~ 220 (471)
++++|.+++..+ ..+.++++|++|++++|.+.....|.... +++|++|++++|.+.+..+..+..+++|+ .|++++
T Consensus 111 ~L~~n~i~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~ 188 (606)
T 3t6q_A 111 FFIQTGISSIDF-IPLHNQKTLESLYLGSNHISSIKLPKGFP-TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188 (606)
T ss_dssp ECTTSCCSCGGG-SCCTTCTTCCEEECCSSCCCCCCCCTTCC-CTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTT
T ss_pred eccccCcccCCc-chhccCCcccEEECCCCcccccCcccccC-CcccCEEEcccCcccccChhhhhhhcccceeEEecCC
Confidence 999999998766 67889999999999999985544444444 78888888888877765555566555555 555555
Q ss_pred CcCCCcCC------------------------------------------------------------------------
Q 012103 221 NNISGEIP------------------------------------------------------------------------ 228 (471)
Q Consensus 221 n~l~~~~p------------------------------------------------------------------------ 228 (471)
|.+.+..|
T Consensus 189 n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~ 268 (606)
T 3t6q_A 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred CccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc
Confidence 54443222
Q ss_pred ---ccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc-c-------------------------CC
Q 012103 229 ---SEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-E-------------------------VR 279 (471)
Q Consensus 229 ---~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~-------------------------~~ 279 (471)
..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+ . +.
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred cCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence 12333444555555555444 344444444444444444444443322 3 33
Q ss_pred CCCCCCEEEccCCcCcccc--chhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchh-hcCCCCC
Q 012103 280 FLTNLVTLQLFKNQFSGEV--PAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPD-MCKRGTM 356 (471)
Q Consensus 280 ~~~~L~~L~l~~n~l~~~~--~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~-~~~~~~L 356 (471)
.+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|.. +..+++|
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence 4444444444444444332 334444555555555555555444445555555555555555555443322 4455555
Q ss_pred ceeeccCCccccccchhhhcCCCCcEEEccCCcCccc---ccccccCCCCCCEeecccCccccccchhhhccCCCCeeeC
Q 012103 357 RDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGT---VPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFA 433 (471)
Q Consensus 357 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~---~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l 433 (471)
+.|++++|.+.+..+..+..+++|++|++++|++.+. .+..+..+++|++|++++|++++..|..+.++++|+.|++
T Consensus 428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507 (606)
T ss_dssp CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEEC
Confidence 5555555555555555555566666666666665542 1234555666666666666666555566666666666666
Q ss_pred CCCcCcccchhhhhcCCCCCEEeccCCcCcccCCC
Q 012103 434 EYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPA 468 (471)
Q Consensus 434 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip~ 468 (471)
++|++++..|+.+..++.| .|++++|++++..|.
T Consensus 508 s~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~ 541 (606)
T 3t6q_A 508 SHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS 541 (606)
T ss_dssp CSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGG
T ss_pred CCCccCcCChhHhCccccc-EEECcCCcccccCHh
Confidence 6666666666666666666 666666666654443
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=396.85 Aligned_cols=397 Identities=19% Similarity=0.155 Sum_probs=258.7
Q ss_pred CCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEE
Q 012103 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHL 142 (471)
Q Consensus 64 ~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L 142 (471)
..++++|+++++.+++ ++...+.++++|++|++++|.+++..|.+|.++++|++|++++|.+++..| .+.++++|++|
T Consensus 31 ~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp CTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred CCCcCEEECCCCCcCE-eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEE
Confidence 4679999999999984 555559999999999999999998888999999999999999999999877 89999999999
Q ss_pred EccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCc----EEEc
Q 012103 143 YLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELI----NLEL 218 (471)
Q Consensus 143 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~----~L~L 218 (471)
++++|.+++..+ ..++++++|++|++++|.+....+|..+..+++|++|++++|.+++..+..+..+++|+ .+++
T Consensus 110 ~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l 188 (606)
T 3vq2_A 110 VAVETKLASLES-FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188 (606)
T ss_dssp ECTTSCCCCSSS-SCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEEC
T ss_pred EccCCccccccc-cccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeec
Confidence 999999998887 67999999999999999996667899999999999999999998876665554333222 3444
Q ss_pred ccCcCCCcCCc---------------------------------------------------------------------
Q 012103 219 SDNNISGEIPS--------------------------------------------------------------------- 229 (471)
Q Consensus 219 ~~n~l~~~~p~--------------------------------------------------------------------- 229 (471)
++|.+++..+.
T Consensus 189 ~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 268 (606)
T 3vq2_A 189 SLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268 (606)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred cCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheec
Confidence 44433321111
Q ss_pred ---------------------------------cccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc
Q 012103 230 ---------------------------------EIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS 276 (471)
Q Consensus 230 ---------------------------------~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 276 (471)
.+..+++|++|++++|.+ +.+|. + .+++|++|++++|...+..
T Consensus 269 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~- 344 (606)
T 3vq2_A 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF- 344 (606)
T ss_dssp CCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC-
T ss_pred cccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch-
Confidence 122233444444444444 23331 2 3344444444444222211
Q ss_pred cCCCCCCCCEEEccCCcCccc--cchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCc-hhhcCC
Q 012103 277 EVRFLTNLVTLQLFKNQFSGE--VPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIP-PDMCKR 353 (471)
Q Consensus 277 ~~~~~~~L~~L~l~~n~l~~~--~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~~ 353 (471)
.+..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|.+.+..| ..+..+
T Consensus 345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 423 (606)
T 3vq2_A 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423 (606)
T ss_dssp CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC
T ss_pred hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhcc
Confidence 334455566666666665543 24555555666666666665553 34445555556666666665554444 345555
Q ss_pred CCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcc-cccccccCCCCCCEeecccCccccccchhhhccCCCCeee
Q 012103 354 GTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKG-TVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLF 432 (471)
Q Consensus 354 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~-~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~ 432 (471)
++|+.|++++|.+.+..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|++++..|..+.++++|+.|+
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence 556666666665555555555555566666666665554 2455555555666666666655555555555555666666
Q ss_pred CCCCcCcccchhhhhcCCCCCEEeccCCcCcccCCC
Q 012103 433 AEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPA 468 (471)
Q Consensus 433 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip~ 468 (471)
+++|++++..|..+..+++|++|++++|+++ .+|.
T Consensus 504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~ 538 (606)
T 3vq2_A 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKG 538 (606)
T ss_dssp CCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEES
T ss_pred CCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCH
Confidence 6666655555555555555666666665555 4444
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-47 Score=393.80 Aligned_cols=399 Identities=19% Similarity=0.151 Sum_probs=307.6
Q ss_pred CCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEE
Q 012103 65 SFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLY 143 (471)
Q Consensus 65 ~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~ 143 (471)
..++.|+++++.+.+..| ..|.++++|++|++++|.+.+..|..|+++++|++|++++|.+++..+ .+.++++|++|+
T Consensus 57 ~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ 135 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHE-DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135 (606)
T ss_dssp TTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEE
T ss_pred ccceEEECCCCccceeCh-hhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEE
Confidence 456677777776664333 336667777777777776666666666666666666666666665533 555666666666
Q ss_pred ccCCCCcccCCcccccCCCCCcEEEccCCCCC--------------------------CCC-------------------
Q 012103 144 LNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFD--------------------------PTP------------------- 178 (471)
Q Consensus 144 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~--------------------------~~~------------------- 178 (471)
+++|.+++... ..+..+++|++|++++|.+. ...
T Consensus 136 L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~ 214 (606)
T 3t6q_A 136 LGSNHISSIKL-PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214 (606)
T ss_dssp CCSSCCCCCCC-CTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSC
T ss_pred CCCCcccccCc-ccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchh
Confidence 66666555322 12223445555555444432 100
Q ss_pred -------------------------------------------------------CCccccCCCCCCEEEcccccCcccC
Q 012103 179 -------------------------------------------------------FPDQVVKLNKLNWLYLTNCSIDGQI 203 (471)
Q Consensus 179 -------------------------------------------------------~~~~l~~l~~L~~L~l~~n~l~~~~ 203 (471)
.+..+..+++|++|++++|.++ .+
T Consensus 215 ~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~l 293 (606)
T 3t6q_A 215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-EL 293 (606)
T ss_dssp HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CC
T ss_pred HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CC
Confidence 0111445566777777777766 56
Q ss_pred CccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCc-cccCCCCCCEEeCCCCcCcccc--c-cCC
Q 012103 204 PVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPV-GLRNLTNLANFDASTNFLEGDL--S-EVR 279 (471)
Q Consensus 204 ~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~--~-~~~ 279 (471)
|..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.++. .+..+++|++|++++|.+.+.. + .+.
T Consensus 294 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 373 (606)
T 3t6q_A 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373 (606)
T ss_dssp CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTT
T ss_pred ChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcc
Confidence 66677777777777777777766666777777777777777777655544 3778889999999999888764 3 788
Q ss_pred CCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCch-hhcCCCCCCEEeccCCcccccCchhhcCCCCCce
Q 012103 280 FLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQ-ELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRD 358 (471)
Q Consensus 280 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~ 358 (471)
.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|+.
T Consensus 374 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 453 (606)
T 3t6q_A 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453 (606)
T ss_dssp TCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCE
T ss_pred cCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCE
Confidence 999999999999999988899999999999999999999877654 4888999999999999999888889999999999
Q ss_pred eeccCCccccc---cchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCC
Q 012103 359 LLMLQNKFTGE---IPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEY 435 (471)
Q Consensus 359 L~l~~n~~~~~---~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~ 435 (471)
|++++|++.+. .+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+.+++.| .|++++
T Consensus 454 L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~ 532 (606)
T 3t6q_A 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLAS 532 (606)
T ss_dssp EECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCS
T ss_pred EECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcC
Confidence 99999999863 23578999999999999999998889999999999999999999999999999999999 999999
Q ss_pred CcCcccchhhhhcCCCCCEEeccCCcCcccCC
Q 012103 436 NRLSGELPEEISKATSLVVIKLNNNQLTGKIP 467 (471)
Q Consensus 436 n~l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip 467 (471)
|++++..|..+..+++|+.|++++|++++..+
T Consensus 533 N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 533 NHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp SCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99999999999999999999999999997654
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=386.57 Aligned_cols=400 Identities=17% Similarity=0.155 Sum_probs=333.2
Q ss_pred CCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEE
Q 012103 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHL 142 (471)
Q Consensus 64 ~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L 142 (471)
+.+++.|+++++.++ .++...|.++++|++|++++|.+++..+..|.++++|++|++++|.+++.++ .+.++++|++|
T Consensus 27 ~~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 27 PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp CSSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred cccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 457999999999998 4555559999999999999999998878889999999999999999999887 89999999999
Q ss_pred EccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCC----cEEEc
Q 012103 143 YLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTEL----INLEL 218 (471)
Q Consensus 143 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L----~~L~L 218 (471)
++++|.+++..+ ..++++++|++|++++|.+....+|..+..+++|++|++++|.+.+..+..+..+++| +.+++
T Consensus 106 ~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 106 VAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp ECTTSCCCCSTT-CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred cccccccccCCC-ccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence 999999998766 5799999999999999999666789999999999999999999987777777777776 77777
Q ss_pred ccCcCCCcCC----------------------------------------------------------------------
Q 012103 219 SDNNISGEIP---------------------------------------------------------------------- 228 (471)
Q Consensus 219 ~~n~l~~~~p---------------------------------------------------------------------- 228 (471)
++|.+.+..|
T Consensus 185 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 7776654333
Q ss_pred -----------ccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc-c-------------------
Q 012103 229 -----------SEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-E------------------- 277 (471)
Q Consensus 229 -----------~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~------------------- 277 (471)
..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+..... .
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~ 342 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCC
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccc
Confidence 33444566777777777766 455555555 66666666665542211 0
Q ss_pred CCCCCCCCEEEccCCcCcccc--chhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCc-hhhcCCC
Q 012103 278 VRFLTNLVTLQLFKNQFSGEV--PAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIP-PDMCKRG 354 (471)
Q Consensus 278 ~~~~~~L~~L~l~~n~l~~~~--~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~~~ 354 (471)
...+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+++..| ..+..++
T Consensus 343 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 421 (570)
T 2z63_A 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421 (570)
T ss_dssp CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCT
T ss_pred cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCC
Confidence 145677888888888877543 66777888899999998888854444 8888999999999999886655 4678889
Q ss_pred CCceeeccCCccccccchhhhcCCCCcEEEccCCcCc-ccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeC
Q 012103 355 TMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLK-GTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFA 433 (471)
Q Consensus 355 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~-~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l 433 (471)
+|+.|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+++|++|++++|++++..|..+.++++|+.|++
T Consensus 422 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 9999999999999888889999999999999999997 578889999999999999999999988999999999999999
Q ss_pred CCCcCcccchhhhhcCCCCCEEeccCCcCcccCCC
Q 012103 434 EYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPA 468 (471)
Q Consensus 434 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip~ 468 (471)
++|++++..|..+..+++|+.|++++|+++|.+|.
T Consensus 502 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99999988888899999999999999999998885
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-46 Score=398.59 Aligned_cols=413 Identities=20% Similarity=0.198 Sum_probs=270.8
Q ss_pred CceeeceEeCCCCCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccc-cccccCCCCCCEEeCCCCcCCccC
Q 012103 52 FCNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEI-SKDLNNCVKLQYLDLGNNVFSGSF 130 (471)
Q Consensus 52 ~c~~~gv~c~~~~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~ 130 (471)
.|.|..|.+ ...++++|+|++|.+++..+ ..+.++++|++|++++|...+.+ |.+|.++++|++|+|++|.+++..
T Consensus 13 ~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~ 89 (844)
T 3j0a_A 13 FCNLTQVPQ--VLNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH 89 (844)
T ss_dssp CCCSSCCCS--SCTTCCEEEEESCCCCEECS-SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred CCCCCCCCC--CCCCcCEEECCCCcCCccCh-hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence 356778877 37889999999999985444 45999999999999999776666 778999999999999999999987
Q ss_pred C-CCCCCCCCCEEEccCCCCcccCCc-ccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCcccc
Q 012103 131 P-EISSLNELQHLYLNLSGFSGVFPW-MSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIG 208 (471)
Q Consensus 131 ~-~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 208 (471)
| .+.++++|++|++++|.+++..+. ..+.++++|++|++++|.+.....+..+..+++|++|++++|.+.+..+..+.
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~ 169 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE 169 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH
T ss_pred HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc
Confidence 7 899999999999999999986551 34899999999999999996655557889999999999999999877777776
Q ss_pred CC--CCCcEEEcccCcCCCcCCccccCCCC------CCeEeeccccccccCCccccC-----------------------
Q 012103 209 NL--TELINLELSDNNISGEIPSEIGNLVK------LWRLELYNNQLSGKLPVGLRN----------------------- 257 (471)
Q Consensus 209 ~l--~~L~~L~L~~n~l~~~~p~~~~~l~~------L~~L~l~~n~l~~~~~~~l~~----------------------- 257 (471)
.+ ++|+.|++++|.+.+..|..+..+.+ |++|++++|.+.+..+..+..
T Consensus 170 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~ 249 (844)
T 3j0a_A 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249 (844)
T ss_dssp HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccc
Confidence 65 66777777777776666555554443 666666666554333322211
Q ss_pred ---------------CCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCccc
Q 012103 258 ---------------LTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGA 321 (471)
Q Consensus 258 ---------------l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~ 321 (471)
.++|+.|++++|.+.+..+ .+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 329 (844)
T 3j0a_A 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329 (844)
T ss_dssp SSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC
T ss_pred cccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc
Confidence 1456666666666555444 455566666666666666655555555566666666666666555
Q ss_pred CchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccc------------------c-------------
Q 012103 322 LPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGE------------------I------------- 370 (471)
Q Consensus 322 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~------------------~------------- 370 (471)
.+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++. +
T Consensus 330 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls 409 (844)
T 3j0a_A 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLS 409 (844)
T ss_dssp CSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECC
T ss_pred CHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecc
Confidence 555555556666666666655544444455555555555555544321 0
Q ss_pred ---------chhhhcCCCCcEEEccCCcCccccc------------------------------ccccCCCCCCEeeccc
Q 012103 371 ---------PATYANCLTLQRFRVSNNSLKGTVP------------------------------AGIWGLPEVNIIDIAL 411 (471)
Q Consensus 371 ---------~~~~~~~~~L~~L~L~~n~~~~~~~------------------------------~~~~~~~~L~~L~ls~ 411 (471)
+..+..+++|+.|++++|++++..+ ..+..+++|+.|++++
T Consensus 410 ~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~ 489 (844)
T 3j0a_A 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489 (844)
T ss_dssp SCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCH
T ss_pred cCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCC
Confidence 1112355666666666666653222 2234445555555555
Q ss_pred CccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCcccCCCC
Q 012103 412 NQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPAS 469 (471)
Q Consensus 412 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip~~ 469 (471)
|++++..|..+.++++|+.|++++|++++..|..+. ++|+.|++++|+++|.+|..
T Consensus 490 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~ 545 (844)
T 3j0a_A 490 NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV 545 (844)
T ss_dssp HHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC
T ss_pred CcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH
Confidence 555555555555555555555555555543333333 45555555555555555544
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-45 Score=381.85 Aligned_cols=398 Identities=18% Similarity=0.212 Sum_probs=265.7
Q ss_pred CCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEE
Q 012103 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHL 142 (471)
Q Consensus 64 ~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L 142 (471)
+.+++.|+++++.++ .++...+.++++|++|++++|.+.+..|..+.++++|++|++++|.+++.++ .+.++++|++|
T Consensus 24 ~~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 24 PTNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp CTTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence 467999999999998 5666669999999999999999998889999999999999999999998777 69999999999
Q ss_pred EccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCcccc--CCCCCcEEEccc
Q 012103 143 YLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIG--NLTELINLELSD 220 (471)
Q Consensus 143 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~L~~ 220 (471)
++++|.+++..+ ..++++++|++|++++|.+. ...+..+..+++|++|++++|.+++..+..+. .+++|+.|++++
T Consensus 103 ~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 103 HLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLS-STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp ECCSSCCCCCCS-CTTTTCTTCCEEECCSSCCS-CCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred ECCCCccCccCh-hHccccCCCCEEECCCCccc-ccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 999999988777 78999999999999999984 44567788899999999999998876665543 557888888888
Q ss_pred CcCCCcCCccccCC---------------------------CCCCeEeeccccccccCCccccCCCC--CCEEeCCCCcC
Q 012103 221 NNISGEIPSEIGNL---------------------------VKLWRLELYNNQLSGKLPVGLRNLTN--LANFDASTNFL 271 (471)
Q Consensus 221 n~l~~~~p~~~~~l---------------------------~~L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~l~~n~~ 271 (471)
|.+.+..|..+..+ ++|++|++++|.+.+..+..+..++. |++|++++|.+
T Consensus 181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260 (680)
T ss_dssp CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence 88877666555433 34555566666666555555555533 66666666666
Q ss_pred ccccc-cCCCCCCCCEEEccCCcCccccchhcc---------------------------------CCCCCCEEEcccCc
Q 012103 272 EGDLS-EVRFLTNLVTLQLFKNQFSGEVPAELG---------------------------------KFKKLVNLSLYTNK 317 (471)
Q Consensus 272 ~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~---------------------------------~~~~L~~L~L~~n~ 317 (471)
.+..+ .+..+++|++|++++|.+.+..|..+. .+++|++|++++|.
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence 65554 556666666666666666655444444 44555555555566
Q ss_pred CcccCchhhcCCCCCCEEeccCCccccc-Cch-hhc--CCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCccc
Q 012103 318 LTGALPQELGSWAEFDFIDVSENLLTGP-IPP-DMC--KRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGT 393 (471)
Q Consensus 318 l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~p~-~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~ 393 (471)
+.+..+..+..+++|++|++++|.+... ++. .+. ..++|+.|++++|++++..+..+..+++|+.|++++|.+.+.
T Consensus 341 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 420 (680)
T 1ziw_A 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420 (680)
T ss_dssp BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEE
T ss_pred cCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccc
Confidence 6555555555555555555544432110 000 000 012233333333444444444444555555555555555443
Q ss_pred c-------------------------cccccCCCCCCEeecccCccc--cccchhhhccCCCCeeeCCCCcCcccchhhh
Q 012103 394 V-------------------------PAGIWGLPEVNIIDIALNQIE--GPITKDIENAKALNLLFAEYNRLSGELPEEI 446 (471)
Q Consensus 394 ~-------------------------~~~~~~~~~L~~L~ls~n~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l 446 (471)
+ +..+..+++|+.|++++|.+. +.+|..+.++++|+.|++++|++++..|..+
T Consensus 421 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 500 (680)
T 1ziw_A 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500 (680)
T ss_dssp CCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhh
Confidence 3 334444444444444444443 3455666666777777777777776666666
Q ss_pred hcCCCCCEEeccCCcCcc
Q 012103 447 SKATSLVVIKLNNNQLTG 464 (471)
Q Consensus 447 ~~l~~L~~L~l~~n~~sg 464 (471)
..+++|+.|++++|++++
T Consensus 501 ~~l~~L~~L~Ls~N~l~~ 518 (680)
T 1ziw_A 501 EGLEKLEILDLQHNNLAR 518 (680)
T ss_dssp TTCTTCCEEECCSSCCGG
T ss_pred ccccccCEEeCCCCCccc
Confidence 777777777777777764
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-46 Score=388.39 Aligned_cols=370 Identities=21% Similarity=0.289 Sum_probs=333.0
Q ss_pred CCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcC-------------------------------------------
Q 012103 90 QALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVF------------------------------------------- 126 (471)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l------------------------------------------- 126 (471)
.+++.|+++++.+.|.+|.+++++++|++|+|++|.+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 5789999999999999999999999999999999843
Q ss_pred -----------------------------------CccCC-CCCCCCCCCEEEccCCCCccc-----------------C
Q 012103 127 -----------------------------------SGSFP-EISSLNELQHLYLNLSGFSGV-----------------F 153 (471)
Q Consensus 127 -----------------------------------~~~~~-~l~~l~~L~~L~l~~n~l~~~-----------------~ 153 (471)
++ +| .+.++++|++|++++|.+++. .
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 34 44 788999999999999999995 6
Q ss_pred Cccccc--CCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEccccc-Ccc-cCCccccCC------CCCcEEEcccCcC
Q 012103 154 PWMSLG--NMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCS-IDG-QIPVEIGNL------TELINLELSDNNI 223 (471)
Q Consensus 154 ~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~l 223 (471)
| ..++ ++++|++|++++|.+ .+.+|..+..+++|++|++++|. +++ .+|..++.+ ++|++|++++|.+
T Consensus 240 p-~~l~~~~l~~L~~L~L~~n~l-~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 240 T-EDLKWDNLKDLTDVEVYNCPN-LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp T-SCCCGGGCTTCCEEEEECCTT-CSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred c-hhhhhcccCCCCEEEecCCcC-CccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 7 7888 999999999999998 56789999999999999999998 998 899888776 9999999999999
Q ss_pred CCcCCc--cccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCC-CCEEEccCCcCccccch
Q 012103 224 SGEIPS--EIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTN-LVTLQLFKNQFSGEVPA 300 (471)
Q Consensus 224 ~~~~p~--~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~ 300 (471)
+ .+|. .++++++|++|++++|.++|.+| .+..+++|++|++++|.+...+..+..+++ |++|++++|.++ .+|.
T Consensus 318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~ 394 (636)
T 4eco_A 318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPN 394 (636)
T ss_dssp S-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred C-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccch
Confidence 9 8898 89999999999999999998999 899999999999999999955558888999 999999999999 7888
Q ss_pred hccCCC--CCCEEEcccCcCcccCchhhc-------CCCCCCEEeccCCcccccCchhh-cCCCCCceeeccCCcccccc
Q 012103 301 ELGKFK--KLVNLSLYTNKLTGALPQELG-------SWAEFDFIDVSENLLTGPIPPDM-CKRGTMRDLLMLQNKFTGEI 370 (471)
Q Consensus 301 ~l~~~~--~L~~L~L~~n~l~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~p~~~-~~~~~L~~L~l~~n~~~~~~ 370 (471)
.+...+ +|++|++++|.+.+.+|..+. .+++|++|++++|.++ .+|..+ ..+++|+.|++++|+++ .+
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i 472 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EI 472 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BC
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-Cc
Confidence 777654 899999999999998888887 7789999999999998 677654 45899999999999999 55
Q ss_pred chh-hhcC-------CCCcEEEccCCcCccccccccc--CCCCCCEeecccCccccccchhhhccCCCCeeeC------C
Q 012103 371 PAT-YANC-------LTLQRFRVSNNSLKGTVPAGIW--GLPEVNIIDIALNQIEGPITKDIENAKALNLLFA------E 434 (471)
Q Consensus 371 ~~~-~~~~-------~~L~~L~L~~n~~~~~~~~~~~--~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l------~ 434 (471)
|.. +... ++|+.|++++|+++ .+|..+. .+++|+.|++++|++++ +|..+.++++|+.|++ +
T Consensus 473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls 550 (636)
T 4eco_A 473 PKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQ 550 (636)
T ss_dssp CSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTT
T ss_pred CHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccc
Confidence 554 3332 39999999999999 7888887 99999999999999998 8999999999999999 5
Q ss_pred CCcCcccchhhhhcCCCCCEEeccCCcCcccCCCCC
Q 012103 435 YNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470 (471)
Q Consensus 435 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip~~~ 470 (471)
+|++.+.+|..+..+++|+.|++++|++ +.||..+
T Consensus 551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~ 585 (636)
T 4eco_A 551 GNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI 585 (636)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred cCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH
Confidence 6888999999999999999999999999 7999876
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-45 Score=377.38 Aligned_cols=392 Identities=18% Similarity=0.151 Sum_probs=336.9
Q ss_pred CCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEE
Q 012103 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHL 142 (471)
Q Consensus 64 ~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L 142 (471)
-.+++.|+++++.+++ +++..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++..+ .+.++++|++|
T Consensus 55 l~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 133 (606)
T 3vq2_A 55 FSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133 (606)
T ss_dssp CTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEE
T ss_pred CccCcEEeCCCCcccc-cCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEE
Confidence 4679999999999984 444559999999999999999998889999999999999999999998886 89999999999
Q ss_pred EccCCCCcc-cCCcccccCCCCCcEEEccCCCCCCCCCCcccc-------------------------------------
Q 012103 143 YLNLSGFSG-VFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVV------------------------------------- 184 (471)
Q Consensus 143 ~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~------------------------------------- 184 (471)
++++|.+.+ ..| ..++++++|++|++++|.+... .+..+.
T Consensus 134 ~L~~n~l~~~~lp-~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L 211 (606)
T 3vq2_A 134 NVAHNFIHSCKLP-AYFSNLTNLVHVDLSYNYIQTI-TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL 211 (606)
T ss_dssp ECCSSCCCCCCCC-GGGGTCTTCCEEECCSSCCCEE-CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEE
T ss_pred eCCCCcccceech-HhHhhcCCCCEEEccCCcceec-ChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeec
Confidence 999999986 457 7899999999999999987421 122111
Q ss_pred -----------------------------------------------------------------------CCCCCCEEE
Q 012103 185 -----------------------------------------------------------------------KLNKLNWLY 193 (471)
Q Consensus 185 -----------------------------------------------------------------------~l~~L~~L~ 193 (471)
.+++|+.|+
T Consensus 212 ~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~ 291 (606)
T 3vq2_A 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS 291 (606)
T ss_dssp ESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEE
T ss_pred cCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEE
Confidence 123333333
Q ss_pred cccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCcc
Q 012103 194 LTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEG 273 (471)
Q Consensus 194 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 273 (471)
+++|.+. .+| .+..+++|+.|++++|.+ +.+| .+ .+++|++|++++|...+.. .+..+++|++|++++|.+.+
T Consensus 292 l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 364 (606)
T 3vq2_A 292 LAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSF 364 (606)
T ss_dssp EESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEE
T ss_pred ecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCC
Confidence 3333333 233 566777899999999999 5788 45 8999999999999665444 56789999999999999987
Q ss_pred cc--c-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCc-hhhcCCCCCCEEeccCCcccccCchh
Q 012103 274 DL--S-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALP-QELGSWAEFDFIDVSENLLTGPIPPD 349 (471)
Q Consensus 274 ~~--~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~p~~ 349 (471)
.. + .+..+++|++|++++|.+++ +|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..|..
T Consensus 365 ~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 443 (606)
T 3vq2_A 365 SGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443 (606)
T ss_dssp EEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred CcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhh
Confidence 63 3 77889999999999999984 66888999999999999999998777 67889999999999999999889999
Q ss_pred hcCCCCCceeeccCCcccc-ccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCC
Q 012103 350 MCKRGTMRDLLMLQNKFTG-EIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKAL 428 (471)
Q Consensus 350 ~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L 428 (471)
+..+++|+.|++++|.+.+ .+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+.++++|
T Consensus 444 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 523 (606)
T 3vq2_A 444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523 (606)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTC
T ss_pred hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcC
Confidence 9999999999999999998 478899999999999999999998889999999999999999999999999999999999
Q ss_pred CeeeCCCCcCcccchhhhhcCC-CCCEEeccCCcCcccCC
Q 012103 429 NLLFAEYNRLSGELPEEISKAT-SLVVIKLNNNQLTGKIP 467 (471)
Q Consensus 429 ~~L~l~~n~l~~~~p~~l~~l~-~L~~L~l~~n~~sg~ip 467 (471)
+.|++++|+++ .+|..+..++ +|+.|++++|++.+..|
T Consensus 524 ~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 524 STLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 99999999999 7888899997 59999999999997554
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-45 Score=376.16 Aligned_cols=402 Identities=20% Similarity=0.199 Sum_probs=279.4
Q ss_pred CceeeceEeCCC-----------CCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEe
Q 012103 52 FCNFTGITCNSD-----------SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLD 120 (471)
Q Consensus 52 ~c~~~gv~c~~~-----------~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 120 (471)
.|.|.|+ |+.. ...+++|+++++.+++..+ ..+.++++|++|++++|.+++..|.+|.++++|++|+
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGH-GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECS-STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccCh-hhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 4788887 6531 2479999999999985444 4599999999999999999988888999999999999
Q ss_pred CCCCcCCccCC-CCCCCCCCCEEEccCCCCccc-CCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEccccc
Q 012103 121 LGNNVFSGSFP-EISSLNELQHLYLNLSGFSGV-FPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCS 198 (471)
Q Consensus 121 l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~ 198 (471)
+++|.+++.++ .+.++++|++|++++|.+++. .+ ..+.++++|++|++++|.+.....+..+..+++|++|++++|.
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT-SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSS-CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchh-hhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 99999998887 589999999999999999864 34 6789999999999999984232223578889999999999999
Q ss_pred CcccCCccccCCCCCcEEEcccCcCCCcCCcc-ccCCCCCCeEeeccccccccC--C-----------------------
Q 012103 199 IDGQIPVEIGNLTELINLELSDNNISGEIPSE-IGNLVKLWRLELYNNQLSGKL--P----------------------- 252 (471)
Q Consensus 199 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~--~----------------------- 252 (471)
+.+..|..+..+++|+.|++++|.+. .+|.. +..+++|++|++++|.+++.. +
T Consensus 160 l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 238 (549)
T 2z81_A 160 LRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238 (549)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHH
T ss_pred ccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchh
Confidence 99888888888777777777777665 33332 244666777777766665421 0
Q ss_pred ------ccccCCCCCCEE-----------------------------------------------------------eCC
Q 012103 253 ------VGLRNLTNLANF-----------------------------------------------------------DAS 267 (471)
Q Consensus 253 ------~~l~~l~~L~~L-----------------------------------------------------------~l~ 267 (471)
..+..+++|+.+ +++
T Consensus 239 ~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~ 318 (549)
T 2z81_A 239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318 (549)
T ss_dssp HHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEE
T ss_pred HHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEec
Confidence 001122223333 333
Q ss_pred CCcCccccccC-CCCCCCCEEEccCCcCccccch---hccCCCCCCEEEcccCcCcccCc--hhhcCCCCCCEEeccCCc
Q 012103 268 TNFLEGDLSEV-RFLTNLVTLQLFKNQFSGEVPA---ELGKFKKLVNLSLYTNKLTGALP--QELGSWAEFDFIDVSENL 341 (471)
Q Consensus 268 ~n~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~---~l~~~~~L~~L~L~~n~l~~~~~--~~~~~~~~L~~L~L~~n~ 341 (471)
+|.+...+..+ ..+++|++|++++|.+++.+|. .++.+++|++|++++|.+++..+ ..+..+++|++|++++|+
T Consensus 319 ~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 398 (549)
T 2z81_A 319 NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398 (549)
T ss_dssp SSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC
T ss_pred cCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC
Confidence 33332111111 2355556666666655554432 24455556666666665553221 234555566666666666
Q ss_pred ccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchh
Q 012103 342 LTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKD 421 (471)
Q Consensus 342 l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~ 421 (471)
++ .+|..+..+++|+.|++++|+++ .++..+ .++|++|++++|++++.+ ..+++|++|++++|+++ .+|.
T Consensus 399 l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~- 468 (549)
T 2z81_A 399 FH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD- 468 (549)
T ss_dssp CC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-
T ss_pred Cc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-
Confidence 55 45555555566666666666555 222222 245666666666666432 46788999999999998 5665
Q ss_pred hhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCcccCC
Q 012103 422 IENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIP 467 (471)
Q Consensus 422 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip 467 (471)
...+++|+.|++++|++++..|+.+..+++|+.|++++|++++..|
T Consensus 469 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 469 ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 4678999999999999998888889999999999999999998776
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=370.80 Aligned_cols=400 Identities=20% Similarity=0.223 Sum_probs=204.1
Q ss_pred CEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEc
Q 012103 66 FVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYL 144 (471)
Q Consensus 66 ~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l 144 (471)
+++.|+++++.+.+..| ..+.++++|++|++++|.+++..+..|.++++|++|++++|.+++.++ .+.++++|++|++
T Consensus 50 ~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 50 QLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred cCcEEECCCCccCccCH-HHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 45555555555553323 235555555555555555554333345555555555555555555444 4555555555555
Q ss_pred cCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccc--cCCCC----------------------------------
Q 012103 145 NLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQV--VKLNK---------------------------------- 188 (471)
Q Consensus 145 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l--~~l~~---------------------------------- 188 (471)
++|.+++..+ ..+.++++|++|++++|.++. ..+..+ ..+++
T Consensus 129 s~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~ 206 (680)
T 1ziw_A 129 SHNGLSSTKL-GTQVQLENLQELLLSNNKIQA-LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206 (680)
T ss_dssp CSSCCSCCCC-CSSSCCTTCCEEECCSSCCCC-BCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCC
T ss_pred CCCcccccCc-hhhcccccCCEEEccCCcccc-cCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccc
Confidence 5555555444 444555555555555554421 111111 12233
Q ss_pred -----------------CCEEEcccccCcccCCccccCCC--CCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccc
Q 012103 189 -----------------LNWLYLTNCSIDGQIPVEIGNLT--ELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSG 249 (471)
Q Consensus 189 -----------------L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 249 (471)
|+.|++++|.+.+..|..+..++ +|+.|++++|.+.+..|..+..+++|++|++++|.+.+
T Consensus 207 l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (680)
T 1ziw_A 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286 (680)
T ss_dssp CHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSE
T ss_pred cChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCc
Confidence 33333344444333333443332 25666666665555555555556666666666665554
Q ss_pred cCCccccCCCCCCEEeCCCCcCccc-----cc-----cCCCCCCCCEEEccCCcCccccchhccCCCCCCE---------
Q 012103 250 KLPVGLRNLTNLANFDASTNFLEGD-----LS-----EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVN--------- 310 (471)
Q Consensus 250 ~~~~~l~~l~~L~~L~l~~n~~~~~-----~~-----~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~--------- 310 (471)
..+..+.++++|+++++++|...+. ++ .+..+++|++|++++|.+++..+..+..+++|++
T Consensus 287 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~ 366 (680)
T 1ziw_A 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366 (680)
T ss_dssp ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSC
T ss_pred cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchh
Confidence 4444444444444444433322110 00 2233344444444444444333333333333333
Q ss_pred -------------------EEcccCcCcccCchhhcCCCCCCEEeccCCcccccCc-hhhcCCCCCceeeccCCcccc--
Q 012103 311 -------------------LSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIP-PDMCKRGTMRDLLMLQNKFTG-- 368 (471)
Q Consensus 311 -------------------L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~~~~L~~L~l~~n~~~~-- 368 (471)
|++++|.+.+..|..+..+++|+.|++++|.+++.+| ..+..+++|+.|++++|++.+
T Consensus 367 ~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 446 (680)
T 1ziw_A 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446 (680)
T ss_dssp CCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC
T ss_pred hhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeC
Confidence 3333333443344445555555555555555554443 344445555555555554443
Q ss_pred ------------------------ccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccc-----
Q 012103 369 ------------------------EIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPIT----- 419 (471)
Q Consensus 369 ------------------------~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~----- 419 (471)
.+|..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..+
T Consensus 447 ~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 526 (680)
T 1ziw_A 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG 526 (680)
T ss_dssp TTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTT
T ss_pred hhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccC
Confidence 445556666667777777777765555556667777777777777665321
Q ss_pred ---hhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCcccCCCC
Q 012103 420 ---KDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPAS 469 (471)
Q Consensus 420 ---~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip~~ 469 (471)
..+.++++|+.|++++|+++...++.+..+++|+.|++++|+++ .+|..
T Consensus 527 ~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~ 578 (680)
T 1ziw_A 527 GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPAS 578 (680)
T ss_dssp SCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTT
T ss_pred CcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCC-cCCHh
Confidence 12566777777777777777333345777778888888888887 45543
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=380.71 Aligned_cols=371 Identities=19% Similarity=0.272 Sum_probs=323.7
Q ss_pred CCCcEEeCCCCCCCccccccccCCCCCCEEeC-CCCcCCcc---------------------------------------
Q 012103 90 QALHKLSLGFNSLYGEISKDLNNCVKLQYLDL-GNNVFSGS--------------------------------------- 129 (471)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l-~~n~l~~~--------------------------------------- 129 (471)
.+++.|+|+++.+.|.+|.+++++++|++|+| ++|.++|.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999999999999999999999999 77754433
Q ss_pred -------------------------------------CC-CCCCCCCCCEEEccCCCCcc-----------------cCC
Q 012103 130 -------------------------------------FP-EISSLNELQHLYLNLSGFSG-----------------VFP 154 (471)
Q Consensus 130 -------------------------------------~~-~l~~l~~L~~L~l~~n~l~~-----------------~~~ 154 (471)
+| .+.++++|++|++++|.+++ .+|
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 44 67889999999999999998 366
Q ss_pred ccccc--CCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEccccc-Ccc-cCCccccCCC-------CCcEEEcccCcC
Q 012103 155 WMSLG--NMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCS-IDG-QIPVEIGNLT-------ELINLELSDNNI 223 (471)
Q Consensus 155 ~~~~~--~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l~-------~L~~L~L~~n~l 223 (471)
..++ ++++|++|++++|.+ ...+|..+..+++|++|++++|. +++ .+|..+..++ +|+.|++++|.+
T Consensus 483 -~~l~f~~L~~L~~L~Ls~N~l-~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 483 -EELSWSNLKDLTDVELYNCPN-MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp -SCCCGGGCTTCCEEEEESCTT-CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred -hhhhhccCCCCCEEECcCCCC-CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 6666 999999999999998 56789999999999999999998 888 7887666554 999999999999
Q ss_pred CCcCCc--cccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCC-CCEEEccCCcCccccch
Q 012103 224 SGEIPS--EIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTN-LVTLQLFKNQFSGEVPA 300 (471)
Q Consensus 224 ~~~~p~--~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~ 300 (471)
. .+|. .+.++++|++|++++|.++ .+| .+..+++|+.|++++|.+...+..+..+++ |++|++++|.++ .+|.
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCch
Confidence 9 8888 8999999999999999998 788 889999999999999999944447888888 999999999999 7787
Q ss_pred hccCCC--CCCEEEcccCcCcccCchh---hc--CCCCCCEEeccCCcccccCchhhc-CCCCCceeeccCCccccccch
Q 012103 301 ELGKFK--KLVNLSLYTNKLTGALPQE---LG--SWAEFDFIDVSENLLTGPIPPDMC-KRGTMRDLLMLQNKFTGEIPA 372 (471)
Q Consensus 301 ~l~~~~--~L~~L~L~~n~l~~~~~~~---~~--~~~~L~~L~L~~n~l~~~~p~~~~-~~~~L~~L~l~~n~~~~~~~~ 372 (471)
.+...+ +|+.|++++|.+.+.+|.. +. ..++|+.|++++|.++ .+|..+. .+++|+.|++++|++. .+|.
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~ 714 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPE 714 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccCh
Confidence 777665 4999999999998876632 22 3458999999999998 7777665 7899999999999999 6665
Q ss_pred hhhc--------CCCCcEEEccCCcCccccccccc--CCCCCCEeecccCccccccchhhhccCCCCeeeCCC------C
Q 012103 373 TYAN--------CLTLQRFRVSNNSLKGTVPAGIW--GLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEY------N 436 (471)
Q Consensus 373 ~~~~--------~~~L~~L~L~~n~~~~~~~~~~~--~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~------n 436 (471)
.+.. +++|+.|+|++|+++ .+|..+. .+++|+.|++++|++++ +|..+.++++|+.|++++ |
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N 792 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGN 792 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCC
T ss_pred HHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccc
Confidence 4433 338999999999999 8888887 99999999999999998 788999999999999976 8
Q ss_pred cCcccchhhhhcCCCCCEEeccCCcCcccCCCCCC
Q 012103 437 RLSGELPEEISKATSLVVIKLNNNQLTGKIPASIY 471 (471)
Q Consensus 437 ~l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip~~~~ 471 (471)
++.+.+|..+..+++|+.|+|++|++ +.||..+.
T Consensus 793 ~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 793 RILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred cccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence 88999999999999999999999999 79998763
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-44 Score=360.95 Aligned_cols=387 Identities=20% Similarity=0.217 Sum_probs=263.9
Q ss_pred CCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEc
Q 012103 65 SFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYL 144 (471)
Q Consensus 65 ~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l 144 (471)
.+++.|+++++.+. .+++..+.++++|++|++++|.+++..|..|.++++|++|++++|.+++.+.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEec
Confidence 56777777777776 34434477777777777777777766677777777777777777777754334 6777777777
Q ss_pred cCCCCcc-cCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCC--CEEEcccccC--cccCCccccC----------
Q 012103 145 NLSGFSG-VFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKL--NWLYLTNCSI--DGQIPVEIGN---------- 209 (471)
Q Consensus 145 ~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~~l~~---------- 209 (471)
++|.+++ ..| ..++++++|++|++++|.+.. ..+..+++| ++|++++|.+ .+..|..+..
T Consensus 98 ~~N~l~~~~~p-~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 98 SFNAFDALPIC-KEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172 (520)
T ss_dssp CSSCCSSCCCC-GGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred cCCccccccch-hhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence 7777766 345 567777777777777777632 345555666 7777777776 4455544443
Q ss_pred ----------------CCCCcEEEcccCc-------CCCcCCccccCCCCCCeEeeccccccccCCccc---cCCCCCCE
Q 012103 210 ----------------LTELINLELSDNN-------ISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGL---RNLTNLAN 263 (471)
Q Consensus 210 ----------------l~~L~~L~L~~n~-------l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~ 263 (471)
+++|+.+++++|. +.+.+| .+..+++|++|++++|.+.+..+..+ ...++|++
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~ 251 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSE
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccE
Confidence 3334444444433 222222 23333333333333333322111100 01234555
Q ss_pred EeCCCCcCccccc-cC-----CCCC--------------------------CCCEEEccCCcCccccchhccCCCCCCEE
Q 012103 264 FDASTNFLEGDLS-EV-----RFLT--------------------------NLVTLQLFKNQFSGEVPAELGKFKKLVNL 311 (471)
Q Consensus 264 L~l~~n~~~~~~~-~~-----~~~~--------------------------~L~~L~l~~n~l~~~~~~~l~~~~~L~~L 311 (471)
|++++|.+.+..+ .+ ..++ +|+.|++++|.+.+.. ....+++|++|
T Consensus 252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L 329 (520)
T 2z7x_B 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHL 329 (520)
T ss_dssp EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEE
T ss_pred EEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEE
Confidence 5555555444333 22 3333 4566666666554221 12577899999
Q ss_pred EcccCcCcccCchhhcCCCCCCEEeccCCcccc--cCchhhcCCCCCceeeccCCccccccch-hhhcCCCCcEEEccCC
Q 012103 312 SLYTNKLTGALPQELGSWAEFDFIDVSENLLTG--PIPPDMCKRGTMRDLLMLQNKFTGEIPA-TYANCLTLQRFRVSNN 388 (471)
Q Consensus 312 ~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--~~p~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~n 388 (471)
++++|.+++.+|..+..+++|++|++++|.+++ .+|..+..+++|+.|++++|.+.+.+|. .+..+++|++|++++|
T Consensus 330 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N 409 (520)
T 2z7x_B 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409 (520)
T ss_dssp ECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSS
T ss_pred EeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCC
Confidence 999999998888888999999999999999986 5667788999999999999999975665 4778899999999999
Q ss_pred cCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhh-hhcCCCCCEEeccCCcCcccC
Q 012103 389 SLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEE-ISKATSLVVIKLNNNQLTGKI 466 (471)
Q Consensus 389 ~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~l~~n~~sg~i 466 (471)
++++.+|..+. ++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..+++|+.|++++|++++..
T Consensus 410 ~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 410 ILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp CCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccC
Confidence 99888877664 78999999999998 67877789999999999999999 56665 888999999999999998754
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-43 Score=358.97 Aligned_cols=393 Identities=19% Similarity=0.187 Sum_probs=323.7
Q ss_pred EEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEccCC
Q 012103 69 EIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLS 147 (471)
Q Consensus 69 ~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n 147 (471)
.++.++.+++ .+|.. + .+++++|++++|.+++..+.+|.++++|++|++++|.+++..+ .+.++++|++|++++|
T Consensus 11 ~~~c~~~~l~-~ip~~-l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 11 TYQCMELNFY-KIPDN-L--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp EEECCSSCCS-SCCSS-S--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred EEEeCCCCcc-ccCCC-c--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 3566666666 66653 2 3579999999999998888899999999999999999999877 7999999999999999
Q ss_pred CCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcc-cCCccccCCCCCcEEEcccCcCCCc
Q 012103 148 GFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDG-QIPVEIGNLTELINLELSDNNISGE 226 (471)
Q Consensus 148 ~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~ 226 (471)
.+++..+ ..+.++++|++|++++|.+.... +..++.+++|++|++++|.+.+ .+|..+.++++|++|++++|.+++.
T Consensus 87 ~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 87 PIQSLAL-GAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CCCEECT-TTTTTCTTCCEEECTTSCCCCST-TCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred cCCccCH-hhhcCccccccccccccccccCC-CccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 9998887 88999999999999999984322 3358899999999999999986 5799999999999999999999987
Q ss_pred CCccccCCCCC----CeEeeccccccccCC--------------------------------------------------
Q 012103 227 IPSEIGNLVKL----WRLELYNNQLSGKLP-------------------------------------------------- 252 (471)
Q Consensus 227 ~p~~~~~l~~L----~~L~l~~n~l~~~~~-------------------------------------------------- 252 (471)
.+..++.+.+| +++++++|.+.+..+
T Consensus 165 ~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 244 (570)
T 2z63_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244 (570)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCE
T ss_pred cHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhh
Confidence 77778777777 777777776554332
Q ss_pred -------------------------------ccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchh
Q 012103 253 -------------------------------VGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAE 301 (471)
Q Consensus 253 -------------------------------~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 301 (471)
..+..+++|+++++++|.+.+....+..+ +|++|++++|.+. .+|..
T Consensus 245 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~ 322 (570)
T 2z63_A 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPTL 322 (570)
T ss_dssp ECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCBC
T ss_pred hcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCcc
Confidence 33445677888888888777544455555 7777777777666 33321
Q ss_pred c--------------------cCCCCCCEEEcccCcCcccC--chhhcCCCCCCEEeccCCcccccCchhhcCCCCCcee
Q 012103 302 L--------------------GKFKKLVNLSLYTNKLTGAL--PQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDL 359 (471)
Q Consensus 302 l--------------------~~~~~L~~L~L~~n~l~~~~--~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L 359 (471)
. ..+++|++|++++|.+.+.. +..+..+++|++|++++|.+++ +|..+..+++|+.|
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L 401 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 401 (570)
T ss_dssp BCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred cccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-ccccccccCCCCEE
Confidence 0 45677888888888877543 6677788889999999888874 44448888999999
Q ss_pred eccCCccccccc-hhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccc-cccchhhhccCCCCeeeCCCCc
Q 012103 360 LMLQNKFTGEIP-ATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIE-GPITKDIENAKALNLLFAEYNR 437 (471)
Q Consensus 360 ~l~~n~~~~~~~-~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~-~~~~~~~~~l~~L~~L~l~~n~ 437 (471)
++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|++. +.+|..+..+++|+.|++++|+
T Consensus 402 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~ 481 (570)
T 2z63_A 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481 (570)
T ss_dssp ECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred EccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc
Confidence 999999887655 56888999999999999999888889999999999999999998 5788899999999999999999
Q ss_pred CcccchhhhhcCCCCCEEeccCCcCcccCCCCC
Q 012103 438 LSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470 (471)
Q Consensus 438 l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip~~~ 470 (471)
+++..|..+..+++|+.|++++|++++..|..|
T Consensus 482 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 514 (570)
T 2z63_A 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cccCChhhhhcccCCCEEeCCCCcCCCCCHHHh
Confidence 998889999999999999999999997766654
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-43 Score=356.15 Aligned_cols=394 Identities=20% Similarity=0.260 Sum_probs=276.7
Q ss_pred eEeCCCCCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCC
Q 012103 58 ITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSL 136 (471)
Q Consensus 58 v~c~~~~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l 136 (471)
..|.. ..+ .+.++++++ .+|.. + .++|++|++++|.+++..|..|.++++|++|++++|.+++.++ .+.++
T Consensus 2 ~~C~~--~~~--c~~~~~~l~-~ip~~-~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 73 (549)
T 2z81_A 2 LSCDA--SGV--CDGRSRSFT-SIPSG-L--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL 73 (549)
T ss_dssp CEECT--TSE--EECTTSCCS-SCCSC-C--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred ccCCC--Cce--EECCCCccc-ccccc-C--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcccc
Confidence 35764 333 789999998 78865 3 3799999999999998888999999999999999999999887 89999
Q ss_pred CCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCC-ccccCCCCCcE
Q 012103 137 NELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIP-VEIGNLTELIN 215 (471)
Q Consensus 137 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~ 215 (471)
++|++|++++|.+++..+ ..++++++|++|++++|.+.....|..+..+++|++|++++|.+.+.+| ..+..+++|++
T Consensus 74 ~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 152 (549)
T 2z81_A 74 GSLEHLDLSDNHLSSLSS-SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152 (549)
T ss_dssp TTCCEEECTTSCCCSCCH-HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred ccCCEEECCCCccCccCH-HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCe
Confidence 999999999999998877 7799999999999999999655677889999999999999998544454 68999999999
Q ss_pred EEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCcccc----ccCCCCCCCCEEEccC
Q 012103 216 LELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDL----SEVRFLTNLVTLQLFK 291 (471)
Q Consensus 216 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~----~~~~~~~~L~~L~l~~ 291 (471)
|++++|.+.+..|..+..+++|++|++++|.+.......+..+++|++|++++|.+.+.. +....+++|+.|++++
T Consensus 153 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 232 (549)
T 2z81_A 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232 (549)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEES
T ss_pred eeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccc
Confidence 999999999989999999999999999999886333333467899999999999987632 1222334444444444
Q ss_pred CcCcc---------------------------------------------------------------------------
Q 012103 292 NQFSG--------------------------------------------------------------------------- 296 (471)
Q Consensus 292 n~l~~--------------------------------------------------------------------------- 296 (471)
|.+++
T Consensus 233 n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L 312 (549)
T 2z81_A 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312 (549)
T ss_dssp CEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTC
T ss_pred cccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccc
Confidence 43322
Q ss_pred -----------ccchhc-cCCCCCCEEEcccCcCcccCch---hhcCCCCCCEEeccCCcccccCc--hhhcCCCCCcee
Q 012103 297 -----------EVPAEL-GKFKKLVNLSLYTNKLTGALPQ---ELGSWAEFDFIDVSENLLTGPIP--PDMCKRGTMRDL 359 (471)
Q Consensus 297 -----------~~~~~l-~~~~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~L~~n~l~~~~p--~~~~~~~~L~~L 359 (471)
.+|..+ ..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+++..+ ..+..+++|+.|
T Consensus 313 ~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L 392 (549)
T 2z81_A 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 392 (549)
T ss_dssp CEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEE
T ss_pred eEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEE
Confidence 122222 2344444444444444443321 13344444444444444432111 223444444444
Q ss_pred eccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCc
Q 012103 360 LMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 360 ~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 439 (471)
++++|+++ .+|..+..+++|++|++++|+++ .+|..+ .++|++|++++|++++.+ .++++|+.|++++|+++
T Consensus 393 ~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~ 464 (549)
T 2z81_A 393 DISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK 464 (549)
T ss_dssp ECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS
T ss_pred ECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC
Confidence 44444444 34444444444444444444444 222222 134555555555555432 46889999999999998
Q ss_pred ccchhhhhcCCCCCEEeccCCcCcccCCCCC
Q 012103 440 GELPEEISKATSLVVIKLNNNQLTGKIPASI 470 (471)
Q Consensus 440 ~~~p~~l~~l~~L~~L~l~~n~~sg~ip~~~ 470 (471)
.+|. ...+++|++|++++|++++.+|..|
T Consensus 465 -~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~ 493 (549)
T 2z81_A 465 -TLPD-ASLFPVLLVMKISRNQLKSVPDGIF 493 (549)
T ss_dssp -SCCC-GGGCTTCCEEECCSSCCCCCCTTGG
T ss_pred -cCCC-cccCccCCEEecCCCccCCcCHHHH
Confidence 7776 5678999999999999998777644
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=371.56 Aligned_cols=395 Identities=21% Similarity=0.192 Sum_probs=335.8
Q ss_pred EEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccC-C-CCCCCCCCCEEEcc
Q 012103 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSF-P-EISSLNELQHLYLN 145 (471)
Q Consensus 68 ~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~-~l~~l~~L~~L~l~ 145 (471)
+.++.++++++ .+|. ..+++++|++++|.+++..|..|.++++|++|++++|...+.+ + .+.++++|++|+++
T Consensus 7 ~~~dcs~~~L~-~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSS-CCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCC-CCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 45677888888 6674 4579999999999999888999999999999999999766655 4 89999999999999
Q ss_pred CCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCc--cccCCCCCCEEEcccccCcccCC-ccccCCCCCcEEEcccCc
Q 012103 146 LSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPD--QVVKLNKLNWLYLTNCSIDGQIP-VEIGNLTELINLELSDNN 222 (471)
Q Consensus 146 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~ 222 (471)
+|.+.+..| ..+.++++|++|++++|.+.. ..+. .+..+++|++|++++|.+.+..+ ..++++++|++|++++|.
T Consensus 82 ~N~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 82 SSKIYFLHP-DAFQGLFHLFELRLYFCGLSD-AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp TCCCCEECT-TSSCSCSSCCCEECTTCCCSS-CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred CCcCcccCH-hHccCCcccCEeeCcCCCCCc-ccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 999999888 899999999999999999943 3344 48899999999999999987654 679999999999999999
Q ss_pred CCCcCCccccCC--CCCCeEeeccccccccCCccccCCCC------CCEEeCCCCcCccccc-c----------------
Q 012103 223 ISGEIPSEIGNL--VKLWRLELYNNQLSGKLPVGLRNLTN------LANFDASTNFLEGDLS-E---------------- 277 (471)
Q Consensus 223 l~~~~p~~~~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~------L~~L~l~~n~~~~~~~-~---------------- 277 (471)
+++..+..+..+ ++|++|++++|.+.+..+..+..+++ |+.|++++|.+.+..+ .
T Consensus 160 i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~ 239 (844)
T 3j0a_A 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239 (844)
T ss_dssp CCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECC
T ss_pred CCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecc
Confidence 998888888877 89999999999999888877766665 9999999997654332 1
Q ss_pred --------------------CCC--CCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEE
Q 012103 278 --------------------VRF--LTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFI 335 (471)
Q Consensus 278 --------------------~~~--~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 335 (471)
+.. .++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 319 (844)
T 3j0a_A 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319 (844)
T ss_dssp SSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEE
T ss_pred cccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEE
Confidence 111 3689999999999998888899999999999999999998888889999999999
Q ss_pred eccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCccc------------------ccc-
Q 012103 336 DVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGT------------------VPA- 396 (471)
Q Consensus 336 ~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~------------------~~~- 396 (471)
++++|.+++..|..+..+++|+.|++++|++.+..+..|..+++|+.|++++|.+++. +|.
T Consensus 320 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~ 399 (844)
T 3j0a_A 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKI 399 (844)
T ss_dssp EEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCC
T ss_pred ECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccccc
Confidence 9999999988888999999999999999999988788899999999999999988732 110
Q ss_pred ---------------------cccCCCCCCEeecccCccccc------------------------------cchhhhcc
Q 012103 397 ---------------------GIWGLPEVNIIDIALNQIEGP------------------------------ITKDIENA 425 (471)
Q Consensus 397 ---------------------~~~~~~~L~~L~ls~n~~~~~------------------------------~~~~~~~l 425 (471)
.+..+++|++|++++|++++. .+..+.++
T Consensus 400 ~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l 479 (844)
T 3j0a_A 400 NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479 (844)
T ss_dssp CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCB
T ss_pred ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCc
Confidence 123567778888887777632 22346677
Q ss_pred CCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCcccCCCC
Q 012103 426 KALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPAS 469 (471)
Q Consensus 426 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip~~ 469 (471)
++|+.|++++|++++..|..+..+++|+.|+|++|++++-.|..
T Consensus 480 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 523 (844)
T 3j0a_A 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND 523 (844)
T ss_dssp CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCC
T ss_pred ccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhh
Confidence 88999999999999888888999999999999999999644443
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=344.79 Aligned_cols=378 Identities=17% Similarity=0.154 Sum_probs=263.7
Q ss_pred EEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC--CCCCCCCCCEEEccCC
Q 012103 70 IELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP--EISSLNELQHLYLNLS 147 (471)
Q Consensus 70 L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~l~~l~~L~~L~l~~n 147 (471)
++.++.+++ .+|. -.++|++|++++|.+++..|..|.++++|++|++++|.+.+.++ .+.++++|++|++++|
T Consensus 15 ~~c~~~~l~-~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 15 AICINRGLH-QVPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EECCSSCCS-SCCC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cCcCCCCcc-cCCC----CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 333445555 5664 23789999999999998888999999999999999999976543 6889999999999999
Q ss_pred CCcccCCcccccCCCCCcEEEccCCCCCCCCCCc--cccCCCCCCEEEcccccCcccCCcc-ccCCCCCcEEEcccCcCC
Q 012103 148 GFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPD--QVVKLNKLNWLYLTNCSIDGQIPVE-IGNLTELINLELSDNNIS 224 (471)
Q Consensus 148 ~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~ 224 (471)
.+++..| ..+.++++|++|++++|.+. ...+. .+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+.
T Consensus 90 ~l~~~~~-~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 90 QFLQLET-GAFNGLANLEVLTLTQCNLD-GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TTCEECT-TTTTTCTTCCEEECTTSCCB-THHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred ccCccCh-hhccCcccCCEEeCCCCCCC-ccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 9988877 78888999999999998873 22233 3777888888888888888766665 778888888888888888
Q ss_pred CcCCccccCC--CCCCeEeeccccccccCCccc--------cCCCCCCEEeCCCCcCccccc-cC---CCCCCCCEEEcc
Q 012103 225 GEIPSEIGNL--VKLWRLELYNNQLSGKLPVGL--------RNLTNLANFDASTNFLEGDLS-EV---RFLTNLVTLQLF 290 (471)
Q Consensus 225 ~~~p~~~~~l--~~L~~L~l~~n~l~~~~~~~l--------~~l~~L~~L~l~~n~~~~~~~-~~---~~~~~L~~L~l~ 290 (471)
+..+..+..+ .+++.+++++|.+.+..+..+ ..+++|++|++++|.+.+..+ .+ ...++|+.|+++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 7777766655 577777777777764333221 233455555555555544332 11 112445555555
Q ss_pred CCcCccccchhccCCCCCCEEEcccCcCcccCchhhc--CCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCcccc
Q 012103 291 KNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELG--SWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTG 368 (471)
Q Consensus 291 ~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~--~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~ 368 (471)
+|...+.... .+.+.+..+..+. ..++|+.|++++|.+++..|..+..+++|+.|++++|++.+
T Consensus 248 ~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 313 (455)
T 3v47_A 248 NSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK 313 (455)
T ss_dssp TCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred cccccccccc--------------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc
Confidence 5543321100 0011111111111 23567777777777777777777777777777777777777
Q ss_pred ccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhc
Q 012103 369 EIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISK 448 (471)
Q Consensus 369 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~ 448 (471)
..+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+.++++|++|++++|++++..+..+..
T Consensus 314 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 393 (455)
T 3v47_A 314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred cChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhcc
Confidence 66777777777777777777777666777777777788888887777777777777777888888888777655556677
Q ss_pred CCCCCEEeccCCcCcccCCC
Q 012103 449 ATSLVVIKLNNNQLTGKIPA 468 (471)
Q Consensus 449 l~~L~~L~l~~n~~sg~ip~ 468 (471)
+++|+.|++++|++++.+|.
T Consensus 394 l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 394 LTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CTTCCEEECCSSCBCCCTTT
T ss_pred CCcccEEEccCCCcccCCCc
Confidence 77788888888888777763
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-42 Score=350.17 Aligned_cols=382 Identities=21% Similarity=0.186 Sum_probs=246.0
Q ss_pred EEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEccC
Q 012103 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNL 146 (471)
Q Consensus 68 ~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~ 146 (471)
+.+++++++++ .+|.. + .++|++|++++|.+++..+..|.++++|++|++++|.+++..+ .+.++++|++|++++
T Consensus 34 ~~l~ls~~~L~-~ip~~-~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNRNLT-HVPKD-L--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTSCCC-SCCTT-S--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCCCCc-cCCCC-C--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 45555555555 34432 2 1455555555555555545555555555555555555555544 455555555555555
Q ss_pred CCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCC--cEEEcccCcC-
Q 012103 147 SGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTEL--INLELSDNNI- 223 (471)
Q Consensus 147 n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l- 223 (471)
|.++.... . .+++|++|++++|.+.....|..+..+++|++|++++|.+.+. .+..+++| +.|++++|.+
T Consensus 110 N~l~~lp~-~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~ 182 (562)
T 3a79_B 110 NRLQNISC-C---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYH 182 (562)
T ss_dssp SCCCEECS-C---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCC
T ss_pred CcCCccCc-c---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccc
Confidence 55553322 1 4555555555555554334445555555555555555555432 22223333 5555555555
Q ss_pred -CCcCCccccC--------------------------CCCCCeEeecccc----------------------------cc
Q 012103 224 -SGEIPSEIGN--------------------------LVKLWRLELYNNQ----------------------------LS 248 (471)
Q Consensus 224 -~~~~p~~~~~--------------------------l~~L~~L~l~~n~----------------------------l~ 248 (471)
.+..|..+.. +++|+.+++++|. +.
T Consensus 183 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~ 262 (562)
T 3a79_B 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262 (562)
T ss_dssp CCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEEC
T ss_pred ccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCc
Confidence 3333333332 2233333333331 11
Q ss_pred cc----CCccccCCCCCCEEeCCCCcCccccc-cC-----CC--------------------------CCCCCEEEccCC
Q 012103 249 GK----LPVGLRNLTNLANFDASTNFLEGDLS-EV-----RF--------------------------LTNLVTLQLFKN 292 (471)
Q Consensus 249 ~~----~~~~l~~l~~L~~L~l~~n~~~~~~~-~~-----~~--------------------------~~~L~~L~l~~n 292 (471)
+. ++.. ...++|++|++++|.+.+.++ .+ .. ..+|++|++++|
T Consensus 263 ~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n 341 (562)
T 3a79_B 263 WKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341 (562)
T ss_dssp HHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESS
T ss_pred HHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCC
Confidence 00 0000 011245555555555554333 21 11 145777777777
Q ss_pred cCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccc--cCchhhcCCCCCceeeccCCcccccc
Q 012103 293 QFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTG--PIPPDMCKRGTMRDLLMLQNKFTGEI 370 (471)
Q Consensus 293 ~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--~~p~~~~~~~~L~~L~l~~n~~~~~~ 370 (471)
.+.... ....+++|++|++++|.+++.+|..+..+++|++|++++|.+++ .+|..+..+++|+.|++++|.+++.+
T Consensus 342 ~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 419 (562)
T 3a79_B 342 PFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419 (562)
T ss_dssp CCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC
T ss_pred Cccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc
Confidence 775321 12678899999999999998888889999999999999999985 44567888999999999999999855
Q ss_pred ch-hhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhh-hhc
Q 012103 371 PA-TYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEE-ISK 448 (471)
Q Consensus 371 ~~-~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-l~~ 448 (471)
|. .+..+++|++|++++|++++.+|..+. ++|++|++++|+++ .+|..+.++++|+.|++++|+++ .+|.. +..
T Consensus 420 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~ 495 (562)
T 3a79_B 420 YDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDR 495 (562)
T ss_dssp SSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTT
T ss_pred ChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhc
Confidence 54 578899999999999999988777654 78999999999998 67777779999999999999999 67766 899
Q ss_pred CCCCCEEeccCCcCcccCC
Q 012103 449 ATSLVVIKLNNNQLTGKIP 467 (471)
Q Consensus 449 l~~L~~L~l~~n~~sg~ip 467 (471)
+++|+.|++++|++++..|
T Consensus 496 l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 496 LTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CTTCCCEECCSCCBCCCHH
T ss_pred CCCCCEEEecCCCcCCCcc
Confidence 9999999999999997654
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=339.38 Aligned_cols=377 Identities=16% Similarity=0.166 Sum_probs=271.3
Q ss_pred Cceeec--eEeCCC--------CCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccc-cccccCCCCCCEEe
Q 012103 52 FCNFTG--ITCNSD--------SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEI-SKDLNNCVKLQYLD 120 (471)
Q Consensus 52 ~c~~~g--v~c~~~--------~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~ 120 (471)
.|.|.+ +.|... ..++++|+|+++.+++..+ ..+.++++|++|++++|.+.+.+ +..|.++++|++|+
T Consensus 7 ~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~ 85 (455)
T 3v47_A 7 ECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNE-TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK 85 (455)
T ss_dssp CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECT-TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred eeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCCh-hHhccCccccEEECcCCcccceECcccccccccCCEEe
Confidence 455554 777642 2679999999999995445 45999999999999999998665 56799999999999
Q ss_pred CCCCcCCccCC-CCCCCCCCCEEEccCCCCcccCC-cccccCCCCCcEEEccCCCCCCCCCCcc-ccCCCCCCEEEcccc
Q 012103 121 LGNNVFSGSFP-EISSLNELQHLYLNLSGFSGVFP-WMSLGNMTNLVSLSVGDNPFDPTPFPDQ-VVKLNKLNWLYLTNC 197 (471)
Q Consensus 121 l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~-l~~l~~L~~L~l~~n 197 (471)
+++|.+++..+ .+.++++|++|++++|.+++..+ ...+..+++|++|++++|.+.. ..|.. +..+++|++|++++|
T Consensus 86 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK-IQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp CTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS-CCCCGGGGGCTTCCEEECTTC
T ss_pred CCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCc-cCcccccCCCCcccEEeCCCC
Confidence 99999999877 89999999999999999987544 1348999999999999999943 33554 889999999999999
Q ss_pred cCcccCCccccCC--CCCcEEEcccCcCCCcCCcc--------ccCCCCCCeEeeccccccccCCccccCC---CCCCEE
Q 012103 198 SIDGQIPVEIGNL--TELINLELSDNNISGEIPSE--------IGNLVKLWRLELYNNQLSGKLPVGLRNL---TNLANF 264 (471)
Q Consensus 198 ~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~--------~~~l~~L~~L~l~~n~l~~~~~~~l~~l---~~L~~L 264 (471)
.+.+..+..+..+ .+|+.+++++|.+.+..+.. +..+++|++|++++|.+.+..+..+... ++|+.+
T Consensus 165 ~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L 244 (455)
T 3v47_A 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244 (455)
T ss_dssp CBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEE
T ss_pred cccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeE
Confidence 9998888888766 68999999999998654433 3356889999999999998777766543 899999
Q ss_pred eCCCCcCccccccCCCCCCCCEEEccCCcCccccchhcc--CCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcc
Q 012103 265 DASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELG--KFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLL 342 (471)
Q Consensus 265 ~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~--~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 342 (471)
++++|...+....... +.+..+..+. ..++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 245 ~l~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 311 (455)
T 3v47_A 245 ILSNSYNMGSSFGHTN-------------FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311 (455)
T ss_dssp ECTTCTTTSCCTTCCS-------------SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred eeccccccccccchhh-------------hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcc
Confidence 9999876543221111 1111111111 124566666666666655555566666666666666666
Q ss_pred cccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhh
Q 012103 343 TGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDI 422 (471)
Q Consensus 343 ~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~ 422 (471)
++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+
T Consensus 312 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 391 (455)
T 3v47_A 312 NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391 (455)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHh
Confidence 65555556666666666666666665555566666666666666666665556666666666666666666665555555
Q ss_pred hccCCCCeeeCCCCcCcccch
Q 012103 423 ENAKALNLLFAEYNRLSGELP 443 (471)
Q Consensus 423 ~~l~~L~~L~l~~n~l~~~~p 443 (471)
..+++|+.|++++|++++..|
T Consensus 392 ~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 392 DRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCTTCCEEECCSSCBCCCTT
T ss_pred ccCCcccEEEccCCCcccCCC
Confidence 666666666666666665555
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-41 Score=347.66 Aligned_cols=397 Identities=17% Similarity=0.170 Sum_probs=288.9
Q ss_pred CCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEE
Q 012103 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHL 142 (471)
Q Consensus 64 ~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L 142 (471)
+..+++|||++|.++ .+++.+|.++++|++|++++|.+++..+.+|.++++|++|+|++|++++.++ .+.++++|++|
T Consensus 51 p~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred CcCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 357899999999999 6777679999999999999999998878899999999999999999999887 78999999999
Q ss_pred EccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCC----CcEEEc
Q 012103 143 YLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTE----LINLEL 218 (471)
Q Consensus 143 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~----L~~L~L 218 (471)
++++|.+++..+ ..|+++++|++|++++|.+.....|..+..+++|++|++++|.+++..+..+..+.+ ...+++
T Consensus 130 ~Ls~N~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 130 VAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp ECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred ECCCCcCCCCCh-hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence 999999998877 789999999999999999977778899999999999999999998777666644332 234555
Q ss_pred ccCcCCCcCCccc------------------------cCC----------------------------------------
Q 012103 219 SDNNISGEIPSEI------------------------GNL---------------------------------------- 234 (471)
Q Consensus 219 ~~n~l~~~~p~~~------------------------~~l---------------------------------------- 234 (471)
+.|.+....+..+ ..+
T Consensus 209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 5554432111110 001
Q ss_pred -----------------CCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCcccc--------------------cc
Q 012103 235 -----------------VKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDL--------------------SE 277 (471)
Q Consensus 235 -----------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~--------------------~~ 277 (471)
..++.+.+..+.+... ..+.....++.+++.+|.+.... ..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 366 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 366 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCC
T ss_pred hhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcc
Confidence 1111111111111100 01222334444444444332211 11
Q ss_pred CCCCCCCCEEEccCCcCcc--ccc-----------------------hhccCCCCCCEEEcccCcCcccCc-hhhcCCCC
Q 012103 278 VRFLTNLVTLQLFKNQFSG--EVP-----------------------AELGKFKKLVNLSLYTNKLTGALP-QELGSWAE 331 (471)
Q Consensus 278 ~~~~~~L~~L~l~~n~l~~--~~~-----------------------~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~ 331 (471)
...+++|+.+++++|.+.. ..+ ..+..+++|+.+++..+......+ ..+..+.+
T Consensus 367 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~ 446 (635)
T 4g8a_A 367 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 446 (635)
T ss_dssp CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTT
T ss_pred cccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccc
Confidence 2235666777776666542 122 233445566666666655543333 34566777
Q ss_pred CCEEeccCCcccccCchhhcCCCCCceeeccCCccc-cccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecc
Q 012103 332 FDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFT-GEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIA 410 (471)
Q Consensus 332 L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls 410 (471)
++.++++.|.+.+..|..+..++.++.|++++|.+. +..|..+..+++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 447 l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls 526 (635)
T 4g8a_A 447 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526 (635)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred cccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECC
Confidence 888888888887777777778888888888888644 4567778888888888888888887778888888888888888
Q ss_pred cCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcC-CCCCEEeccCCcCcc
Q 012103 411 LNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKA-TSLVVIKLNNNQLTG 464 (471)
Q Consensus 411 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l-~~L~~L~l~~n~~sg 464 (471)
+|++++..|..+.++++|+.|++++|++++..|+.+..+ ++|++|+|++|+++.
T Consensus 527 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 527 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 888888888888888888888888888888888888887 578888888888874
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-42 Score=325.72 Aligned_cols=292 Identities=29% Similarity=0.478 Sum_probs=207.6
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCce--eeceEeCCCC--CCEEEEEcCCCCCcc--ccCcccccCCCCC
Q 012103 19 CINSDELQILLNLKTSLKDSKSSIFSSWVSNNHFCN--FTGITCNSDS--SFVQEIELSNRNLKG--TLPFDSICQLQAL 92 (471)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~--~~gv~c~~~~--~~v~~L~L~~~~l~g--~l~~~~~~~l~~L 92 (471)
.|.++|++||++||+++.+|. .+++|..+.+||. |.||.|+... ++|++|+++++.+.| .+|.. +..+++|
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~--~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L 78 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT--TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSS-LANLPYL 78 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG--GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGG-GGGCTTC
T ss_pred CCCHHHHHHHHHHHHhcCCcc--cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChh-HhCCCCC
Confidence 578999999999999997763 6899998889998 9999998643 789999999999998 77765 8888888
Q ss_pred cEEeCCC-CCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEcc
Q 012103 93 HKLSLGF-NSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVG 170 (471)
Q Consensus 93 ~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 170 (471)
++|++++ |.+.+.+|..+.++++|++|++++|.+++..| .+.++++|++|++++|.+++..
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~----------------- 141 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL----------------- 141 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCC-----------------
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcC-----------------
Confidence 8888884 88888888888888888888888887776555 4555555555555555555433
Q ss_pred CCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCC-CCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccc
Q 012103 171 DNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLT-ELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSG 249 (471)
Q Consensus 171 ~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 249 (471)
|..+..+++|++|++++|.+++.+|..+..++ +|+.|++++|.+.+.+|..+..+. |++|++++|.+++
T Consensus 142 ---------p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 142 ---------PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG 211 (313)
T ss_dssp ---------CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE
T ss_pred ---------ChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC
Confidence 44455555566666666666666666666666 677777777777666666666665 7777777777766
Q ss_pred cCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCC
Q 012103 250 KLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSW 329 (471)
Q Consensus 250 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~ 329 (471)
..+..+..+++|++|++++|.+++.++.+..+++|++|++++|.+++.+|..+..+++|++|++++|.++|.+|.. ..+
T Consensus 212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l 290 (313)
T 1ogq_A 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL 290 (313)
T ss_dssp CCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred cCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccc
Confidence 6666666667777777777666655555555566666666666666666666666666666666666666555553 455
Q ss_pred CCCCEEeccCCc
Q 012103 330 AEFDFIDVSENL 341 (471)
Q Consensus 330 ~~L~~L~L~~n~ 341 (471)
++|+.+++++|.
T Consensus 291 ~~L~~l~l~~N~ 302 (313)
T 1ogq_A 291 QRFDVSAYANNK 302 (313)
T ss_dssp GGSCGGGTCSSS
T ss_pred cccChHHhcCCC
Confidence 555556665554
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-41 Score=342.17 Aligned_cols=365 Identities=17% Similarity=0.186 Sum_probs=285.0
Q ss_pred CCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCcc-CC-CCCCCCCCCE
Q 012103 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGS-FP-EISSLNELQH 141 (471)
Q Consensus 64 ~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~-~l~~l~~L~~ 141 (471)
-.+++.|++++|.+++..|. .+.++++|++|++++|.++ .+|.. .+++|++|++++|.+++. .| .+.++++|++
T Consensus 44 l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~ 119 (520)
T 2z7x_B 44 LSKLRILIISHNRIQYLDIS-VFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119 (520)
T ss_dssp CTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCE
T ss_pred cccccEEecCCCccCCcChH-HhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceE
Confidence 46799999999999955454 4999999999999999998 56766 899999999999999984 45 8999999999
Q ss_pred EEccCCCCcccCCcccccCCCCC--cEEEccCCCCC-CCCCCcccc--------------------------CCCCCCEE
Q 012103 142 LYLNLSGFSGVFPWMSLGNMTNL--VSLSVGDNPFD-PTPFPDQVV--------------------------KLNKLNWL 192 (471)
Q Consensus 142 L~l~~n~l~~~~~~~~~~~l~~L--~~L~l~~n~~~-~~~~~~~l~--------------------------~l~~L~~L 192 (471)
|++++|.+++ ..+..+++| +.|++++|.+. ....|..+. .+++|+.+
T Consensus 120 L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L 195 (520)
T 2z7x_B 120 LGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195 (520)
T ss_dssp EEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEEC
T ss_pred EEecCcccch----hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeec
Confidence 9999999986 356777777 99999999871 112233332 35566666
Q ss_pred Eccccc-------CcccCCccccCCC---------------------------CCcEEEcccCcCCCcCCccc-----cC
Q 012103 193 YLTNCS-------IDGQIPVEIGNLT---------------------------ELINLELSDNNISGEIPSEI-----GN 233 (471)
Q Consensus 193 ~l~~n~-------l~~~~~~~l~~l~---------------------------~L~~L~L~~n~l~~~~p~~~-----~~ 233 (471)
++++|. +.+.+| .+..++ +|++|++++|.+.|.+|..+ .+
T Consensus 196 ~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~ 274 (520)
T 2z7x_B 196 NIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTS 274 (520)
T ss_dssp CEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCC
T ss_pred cccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhccccc
Confidence 666654 333332 344444 45555555555555555555 55
Q ss_pred CCCCCeEeeccccccccCC-ccccCC---CCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCC
Q 012103 234 LVKLWRLELYNNQLSGKLP-VGLRNL---TNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLV 309 (471)
Q Consensus 234 l~~L~~L~l~~n~l~~~~~-~~l~~l---~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~ 309 (471)
++.|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... ....+++|++|++++|.+++..|..+..+++|+
T Consensus 275 l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 351 (520)
T 2z7x_B 275 LKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELE 351 (520)
T ss_dssp CCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCC
T ss_pred CceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc-chhhCCcccEEEeECCccChhhhhhhccCCCCC
Confidence 55666666665555 233 223222 45777777777665322 236789999999999999988999999999999
Q ss_pred EEEcccCcCcc--cCchhhcCCCCCCEEeccCCcccccCchh-hcCCCCCceeeccCCccccccchhhhcCCCCcEEEcc
Q 012103 310 NLSLYTNKLTG--ALPQELGSWAEFDFIDVSENLLTGPIPPD-MCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVS 386 (471)
Q Consensus 310 ~L~L~~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~~p~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 386 (471)
+|++++|.+++ .+|..+..+++|++|++++|.+++.+|.. +..+++|+.|++++|++++..|..+. ++|+.|+++
T Consensus 352 ~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls 429 (520)
T 2z7x_B 352 TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLH 429 (520)
T ss_dssp EEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECC
T ss_pred EEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECC
Confidence 99999999996 56678899999999999999999768765 67789999999999999988877664 799999999
Q ss_pred CCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccch
Q 012103 387 NNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELP 443 (471)
Q Consensus 387 ~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 443 (471)
+|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 430 ~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 430 SNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp SSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 99999 888888899999999999999995433348899999999999999987654
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=333.26 Aligned_cols=366 Identities=18% Similarity=0.201 Sum_probs=292.3
Q ss_pred CCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEE
Q 012103 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLY 143 (471)
Q Consensus 64 ~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~ 143 (471)
...+++|++++|.+. .+++..+.++++|++|++++|.+++..|..|.++++|++|++++|.++..+.. .+++|++|+
T Consensus 51 ~~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 51 PPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLD 127 (562)
T ss_dssp CTTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEE
T ss_pred CCCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEE
Confidence 468999999999998 56655699999999999999999988899999999999999999999965545 899999999
Q ss_pred ccCCCCcccC-CcccccCCCCCcEEEccCCCCCCCCCCccccCCCCC--CEEEcccccC--cccCCccccCC--------
Q 012103 144 LNLSGFSGVF-PWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKL--NWLYLTNCSI--DGQIPVEIGNL-------- 210 (471)
Q Consensus 144 l~~n~l~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~~l~~l-------- 210 (471)
+++|.+++.. | ..++++++|++|++++|.+... .+..+++| ++|++++|.+ ++..|..+..+
T Consensus 128 Ls~N~l~~l~~p-~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~ 202 (562)
T 3a79_B 128 LSFNDFDVLPVC-KEFGNLTKLTFLGLSAAKFRQL----DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLV 202 (562)
T ss_dssp CCSSCCSBCCCC-GGGGGCTTCCEEEEECSBCCTT----TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEE
T ss_pred CCCCCccccCch-HhhcccCcccEEecCCCccccC----chhhhhhceeeEEEeecccccccccCcccccccCcceEEEE
Confidence 9999999843 5 7899999999999999998542 33444555 9999999988 66666555443
Q ss_pred ------------------CCCcEEEcccCc----------------------------CCCc----CCccccCCCCCCeE
Q 012103 211 ------------------TELINLELSDNN----------------------------ISGE----IPSEIGNLVKLWRL 240 (471)
Q Consensus 211 ------------------~~L~~L~L~~n~----------------------------l~~~----~p~~~~~l~~L~~L 240 (471)
++|+.+++++|. +.+. ++.. ....+|++|
T Consensus 203 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L 281 (562)
T 3a79_B 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYL 281 (562)
T ss_dssp ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEE
T ss_pred ecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEE
Confidence 344444444442 1000 0000 112366677
Q ss_pred eeccccccccCCccc-----cCC--------------------------CCCCEEeCCCCcCccccccCCCCCCCCEEEc
Q 012103 241 ELYNNQLSGKLPVGL-----RNL--------------------------TNLANFDASTNFLEGDLSEVRFLTNLVTLQL 289 (471)
Q Consensus 241 ~l~~n~l~~~~~~~l-----~~l--------------------------~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l 289 (471)
++++|.+++.+|..+ .++ .+|++|++++|.+.... ....+++|++|++
T Consensus 282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~l 360 (562)
T 3a79_B 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV-CPPSPSSFTFLNF 360 (562)
T ss_dssp EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC-CCSSCCCCCEEEC
T ss_pred EEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc-CccCCCCceEEEC
Confidence 777776666555544 222 45778888887765322 2367899999999
Q ss_pred cCCcCccccchhccCCCCCCEEEcccCcCcc--cCchhhcCCCCCCEEeccCCcccccCchh-hcCCCCCceeeccCCcc
Q 012103 290 FKNQFSGEVPAELGKFKKLVNLSLYTNKLTG--ALPQELGSWAEFDFIDVSENLLTGPIPPD-MCKRGTMRDLLMLQNKF 366 (471)
Q Consensus 290 ~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~~p~~-~~~~~~L~~L~l~~n~~ 366 (471)
++|.+++..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++.+|.. +..+++|+.|++++|++
T Consensus 361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l 440 (562)
T 3a79_B 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440 (562)
T ss_dssp CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence 9999998899999999999999999999986 34567889999999999999999767764 67789999999999999
Q ss_pred ccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchh-hhccCCCCeeeCCCCcCcccch
Q 012103 367 TGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKD-IENAKALNLLFAEYNRLSGELP 443 (471)
Q Consensus 367 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~p 443 (471)
++.+|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|++++ +|.. +..+++|+.|++++|++.+..+
T Consensus 441 ~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 441 TGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred Ccchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 987776554 79999999999999 788888899999999999999995 5555 8999999999999999987655
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-39 Score=319.92 Aligned_cols=344 Identities=26% Similarity=0.323 Sum_probs=269.6
Q ss_pred CCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEc
Q 012103 65 SFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYL 144 (471)
Q Consensus 65 ~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l 144 (471)
.+++.|+++++.+. .++. +..+++|++|++++|.+.+..+ +.++++|++|++++|.+++..+ +.++++|++|++
T Consensus 46 ~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred ccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEEC
Confidence 46888999888887 5653 7788999999999998876544 8889999999999999887766 888899999999
Q ss_pred cCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCC
Q 012103 145 NLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNIS 224 (471)
Q Consensus 145 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 224 (471)
++|.+++.. .+.++++|++|++++|.+.. ++ .+..+++|++|+++ +.+.+. ..+..+++|+.|++++|.+.
T Consensus 120 ~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~--~~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 120 FNNQITDID---PLKNLTNLNRLELSSNTISD--IS-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVS 190 (466)
T ss_dssp CSSCCCCCG---GGTTCTTCSEEEEEEEEECC--CG-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred CCCCCCCCh---HHcCCCCCCEEECCCCccCC--Ch-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCC
Confidence 999888763 37888999999999888743 33 47888889999886 344432 23788888999999988887
Q ss_pred CcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccC
Q 012103 225 GEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGK 304 (471)
Q Consensus 225 ~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 304 (471)
+ + ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. +.+..+++|++|++++|.+.+..+ +..
T Consensus 191 ~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 191 D-I-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp C-C-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred C-C-hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh--hhc
Confidence 4 3 347788888888888888876544 67788888888888887753 456777888888888888886544 677
Q ss_pred CCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEE
Q 012103 305 FKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFR 384 (471)
Q Consensus 305 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 384 (471)
+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..| +..+++|+.|++++|++++..+ +..+++|+.|+
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 337 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence 8888888888888875433 6778888888888888875433 6778888888888888886655 67788888888
Q ss_pred ccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcc
Q 012103 385 VSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSG 440 (471)
Q Consensus 385 L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 440 (471)
+++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 888888854 357788888888888888887766 7788888888888888875
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-39 Score=319.68 Aligned_cols=347 Identities=23% Similarity=0.348 Sum_probs=277.0
Q ss_pred cCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCcE
Q 012103 87 CQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVS 166 (471)
Q Consensus 87 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 166 (471)
..+++++.|+++++.+.. +| .+..+++|++|++++|.+++.++ +.++++|++|++++|.+.+..+ +.++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP---LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCE
T ss_pred hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh---hcCCCCCCE
Confidence 346788888998888864 44 47788899999999998887766 8888899999999998887643 788889999
Q ss_pred EEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeecccc
Q 012103 167 LSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQ 246 (471)
Q Consensus 167 L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 246 (471)
|++++|.+.. ++. +..+++|++|++++|.+.+ ++ .+..+++|+.|+++ +.+.+. + .+.++++|++|++++|.
T Consensus 117 L~L~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQITD--IDP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL-K-PLANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSCCCC--CGG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC-G-GGTTCTTCCEEECCSSC
T ss_pred EECCCCCCCC--ChH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCc-h-hhccCCCCCEEECcCCc
Confidence 9999988743 333 7888899999999988874 33 47888899999986 444432 2 37788899999999988
Q ss_pred ccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhh
Q 012103 247 LSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQEL 326 (471)
Q Consensus 247 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~ 326 (471)
+.+. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+ +
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~ 261 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L 261 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h
Confidence 8743 347788899999999988876554 66688899999999988753 356778889999999998886544 7
Q ss_pred cCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCE
Q 012103 327 GSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNI 406 (471)
Q Consensus 327 ~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~ 406 (471)
..+++|++|++++|.+++. +. +..+++|+.|++++|++.+..+ +..+++|+.|++++|++++..| +..+++|+.
T Consensus 262 ~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 335 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335 (466)
T ss_dssp TTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred hcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence 7888899999999988743 33 7778889999999998886544 7788899999999999886655 678888999
Q ss_pred eecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCcc
Q 012103 407 IDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTG 464 (471)
Q Consensus 407 L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg 464 (471)
|++++|++++. ..+.++++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 336 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 336 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred eECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 99999988875 467888999999999999987776 8888899999999998885
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-38 Score=327.96 Aligned_cols=395 Identities=18% Similarity=0.163 Sum_probs=301.8
Q ss_pred EEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEccCC
Q 012103 69 EIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLS 147 (471)
Q Consensus 69 ~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n 147 (471)
.++.++.+++ .+|.. + -+++++|+|++|.+++..+.+|.++++|++|+|++|.+++.++ .|.++++|++|+|++|
T Consensus 35 ~~~c~~~~l~-~vP~~-l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 35 TYQCMELNFY-KIPDN-L--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp EEECTTSCCS-SCCSS-S--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCCcC-ccCCC-C--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 3466677777 67754 2 2479999999999998778899999999999999999999888 7999999999999999
Q ss_pred CCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcc-cCCccccCCCCCcEEEcccCcCCCc
Q 012103 148 GFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDG-QIPVEIGNLTELINLELSDNNISGE 226 (471)
Q Consensus 148 ~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~ 226 (471)
++++..+ ..|.++++|++|++++|++.. ..+..++.+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++.
T Consensus 111 ~l~~l~~-~~f~~L~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 111 PIQSLAL-GAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CCCEECG-GGGTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred cCCCCCH-HHhcCCCCCCEEECCCCcCCC-CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 9998877 789999999999999999943 234568999999999999999975 4678889999999999999999987
Q ss_pred CCccccCCCCCC----eEeeccccccccCCcc------------------------ccCCC-------------------
Q 012103 227 IPSEIGNLVKLW----RLELYNNQLSGKLPVG------------------------LRNLT------------------- 259 (471)
Q Consensus 227 ~p~~~~~l~~L~----~L~l~~n~l~~~~~~~------------------------l~~l~------------------- 259 (471)
.+..+..+.+++ .++++.|.+....+.. +..+.
T Consensus 189 ~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 268 (635)
T 4g8a_A 189 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 268 (635)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred ccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccc
Confidence 777776554433 4555555544221111 11111
Q ss_pred --------------------------------------CCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccc--
Q 012103 260 --------------------------------------NLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVP-- 299 (471)
Q Consensus 260 --------------------------------------~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-- 299 (471)
+++.+++.++.+... ..+.....++.|++.+|.+.+..+
T Consensus 269 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~ 347 (635)
T 4g8a_A 269 KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV-KDFSYNFGWQHLELVNCKFGQFPTLK 347 (635)
T ss_dssp CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC-GGGGSCCCCSEEEEESCEESSCCCCB
T ss_pred cccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc-cccccchhhhhhhcccccccCcCccc
Confidence 222222222222211 123345567778777776543211
Q ss_pred -----------------hhccCCCCCCEEEcccCcCcc--cCchhhc-----------------------CCCCCCEEec
Q 012103 300 -----------------AELGKFKKLVNLSLYTNKLTG--ALPQELG-----------------------SWAEFDFIDV 337 (471)
Q Consensus 300 -----------------~~l~~~~~L~~L~L~~n~l~~--~~~~~~~-----------------------~~~~L~~L~L 337 (471)
.....+++|+.+++++|.+.. ..+.... .++.|+.+++
T Consensus 348 l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l 427 (635)
T 4g8a_A 348 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDF 427 (635)
T ss_dssp CTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEEC
T ss_pred chhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhh
Confidence 122356789999999988753 2333333 3445555555
Q ss_pred cCCcccccCc-hhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCc-ccccccccCCCCCCEeecccCccc
Q 012103 338 SENLLTGPIP-PDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLK-GTVPAGIWGLPEVNIIDIALNQIE 415 (471)
Q Consensus 338 ~~n~l~~~~p-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~-~~~~~~~~~~~~L~~L~ls~n~~~ 415 (471)
..+......+ ..+..+.+++.++++.|.+.+..+..+..++.++.|++++|.+. +.+|..+..+++|++|++++|+++
T Consensus 428 ~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~ 507 (635)
T 4g8a_A 428 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 507 (635)
T ss_dssp TTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred hhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccC
Confidence 5554443333 34566788889999999999888888999999999999999855 457788999999999999999999
Q ss_pred cccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCcccCCCCC
Q 012103 416 GPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470 (471)
Q Consensus 416 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip~~~ 470 (471)
+..|..|.++++|++|+|++|+|++..|..+..+++|++|+|++|+|++..|..|
T Consensus 508 ~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 562 (635)
T 4g8a_A 508 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562 (635)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred CcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH
Confidence 9999999999999999999999999889999999999999999999998888765
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-40 Score=324.32 Aligned_cols=363 Identities=24% Similarity=0.325 Sum_probs=206.8
Q ss_pred CCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCC-------------CEEeCCCCcCCccC
Q 012103 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKL-------------QYLDLGNNVFSGSF 130 (471)
Q Consensus 64 ~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L-------------~~L~l~~n~l~~~~ 130 (471)
..++++++++++.+ |.+|.. ++++++|++|++++|.+.|.+|..++++++| ++|++++|.+++.+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred cccchhhhcccCch-hhCChh-HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 35688899999998 688876 8999999999999999888888888887654 88888888887644
Q ss_pred CCCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCC
Q 012103 131 PEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNL 210 (471)
Q Consensus 131 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 210 (471)
.. .++|++|++++|.+++ .| .. .++|++|++++|.+.. ++.. .++|++|++++|.+++ +| .+..+
T Consensus 88 ~~---~~~L~~L~l~~n~l~~-lp-~~---~~~L~~L~l~~n~l~~--l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l 152 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTE-LP-EL---PQSLKSLLVDNNNLKA--LSDL---PPLLEYLGVSNNQLEK-LP-ELQNS 152 (454)
T ss_dssp SC---CTTCSEEECCSSCCSS-CC-CC---CTTCCEEECCSSCCSC--CCSC---CTTCCEEECCSSCCSS-CC-CCTTC
T ss_pred CC---cCCCCEEEccCCcCCc-cc-cc---cCCCcEEECCCCccCc--ccCC---CCCCCEEECcCCCCCC-Cc-ccCCC
Confidence 32 2678888888888776 33 21 3667777777776632 2221 1567777777777764 55 46777
Q ss_pred CCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEcc
Q 012103 211 TELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLF 290 (471)
Q Consensus 211 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~ 290 (471)
++|++|++++|.+++ +|..+ .+|++|++++|.+++ +| .+.++++|++|++++|.+.+.... .++|++|+++
T Consensus 153 ~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~ 223 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAG 223 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECC
T ss_pred CCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECc
Confidence 777777777777663 44432 367777777777664 44 466667777777777766642221 2466666666
Q ss_pred CCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCcccc--
Q 012103 291 KNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTG-- 368 (471)
Q Consensus 291 ~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~-- 368 (471)
+|.+. .+|. +..+++|++|++++|++++ +|.. .++|++|++++|.+++ +|.. .++|+.|++++|.+++
T Consensus 224 ~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~ 293 (454)
T 1jl5_A 224 NNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLS 293 (454)
T ss_dssp SSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEES
T ss_pred CCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCccc
Confidence 66666 4453 5566666666666666653 3321 2455566666655553 3332 2344555555554443
Q ss_pred ccchh-------------hhcC-CCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCC
Q 012103 369 EIPAT-------------YANC-LTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAE 434 (471)
Q Consensus 369 ~~~~~-------------~~~~-~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~ 434 (471)
.+|.. +..+ ++|+.|++++|++++ +|.. +++|++|++++|++++ +|. .+++|+.|+++
T Consensus 294 ~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~ 365 (454)
T 1jl5_A 294 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVE 365 (454)
T ss_dssp CCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECC
T ss_pred CcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECC
Confidence 11111 1122 478888888888884 5653 5789999999999884 555 47899999999
Q ss_pred CCcCcc--cchhhhhcC-------------CCCCEEeccCCcCcc--cCCCCC
Q 012103 435 YNRLSG--ELPEEISKA-------------TSLVVIKLNNNQLTG--KIPASI 470 (471)
Q Consensus 435 ~n~l~~--~~p~~l~~l-------------~~L~~L~l~~n~~sg--~ip~~~ 470 (471)
+|++++ .+|..+..+ ++|+.|++++|+++| .||.++
T Consensus 366 ~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl 418 (454)
T 1jl5_A 366 YNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESV 418 (454)
T ss_dssp SSCCSSCCCCCTTCCEEECCC--------------------------------
T ss_pred CCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhH
Confidence 999998 788888877 789999999999997 888875
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-39 Score=318.19 Aligned_cols=345 Identities=18% Similarity=0.182 Sum_probs=252.2
Q ss_pred CCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEc
Q 012103 65 SFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYL 144 (471)
Q Consensus 65 ~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l 144 (471)
.+++.|+++++.+++ +| .+..+++|++|++++|.+++. | ++.+++|++|++++|.+++. .+.++++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~-~~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~--~~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITD-MT--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL--DVTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCC-CT--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC--CCTTCTTCCEEEC
T ss_pred CCCCEEEccCCCccc-Ch--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee--ecCCCCcCCEEEC
Confidence 568888888888884 44 388888888888888888764 3 78888888888888888875 3778888888888
Q ss_pred cCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCC
Q 012103 145 NLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNIS 224 (471)
Q Consensus 145 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 224 (471)
++|.+++. .+..+++|++|++++|.++. + .+..+++|++|++++|...+.+ .+..+++|+.|++++|.++
T Consensus 114 ~~N~l~~l----~~~~l~~L~~L~l~~N~l~~--l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 114 DTNKLTKL----DVSQNPLLTYLNCARNTLTE--I--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp CSSCCSCC----CCTTCTTCCEEECTTSCCSC--C--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred CCCcCCee----cCCCCCcCCEEECCCCccce--e--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc
Confidence 88888874 27788888888888888844 2 2677888888888888655555 4677888888888888888
Q ss_pred CcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccC
Q 012103 225 GEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGK 304 (471)
Q Consensus 225 ~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 304 (471)
+ +| +..+++|++|++++|.+++. .+..+++|++|++++|++++. + +..+++|++|++++|.+++..+ ..
T Consensus 184 ~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p-~~~l~~L~~L~l~~N~l~~~~~---~~ 252 (457)
T 3bz5_A 184 E-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D-VTPLTQLTYFDCSVNPLTELDV---ST 252 (457)
T ss_dssp C-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C-CTTCTTCSEEECCSSCCSCCCC---TT
T ss_pred e-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C-ccccCCCCEEEeeCCcCCCcCH---HH
Confidence 5 44 67788888888888888754 377788888888888888874 3 7778888888888888886543 34
Q ss_pred CCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccch--------hhhc
Q 012103 305 FKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPA--------TYAN 376 (471)
Q Consensus 305 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~--------~~~~ 376 (471)
+++|+.|++++| +|+.|++++|.+.+.+| ...+++|+.|++++|...+.+|. .+..
T Consensus 253 l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~ 316 (457)
T 3bz5_A 253 LSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ 316 (457)
T ss_dssp CTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT
T ss_pred CCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhh
Confidence 455555555443 23344444444444444 23344555555555544433332 1344
Q ss_pred CCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEe
Q 012103 377 CLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIK 456 (471)
Q Consensus 377 ~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 456 (471)
+++|++|++++|++++ ++ +..+++|+.|++++|++++ ++.|..|++++|++.|. .++..|..++
T Consensus 317 ~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~ 380 (457)
T 3bz5_A 317 NPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKET 380 (457)
T ss_dssp CTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBC
T ss_pred cccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccc
Confidence 5788899999999986 33 7888899999999998885 35667778888888876 3556678889
Q ss_pred ccCCcCcccCCCCC
Q 012103 457 LNNNQLTGKIPASI 470 (471)
Q Consensus 457 l~~n~~sg~ip~~~ 470 (471)
+++|+++|.||..+
T Consensus 381 l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 381 LTNNSLTIAVSPDL 394 (457)
T ss_dssp CBTTBEEEECCTTC
T ss_pred cccCcEEEEcChhH
Confidence 99999999998765
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-37 Score=306.32 Aligned_cols=347 Identities=17% Similarity=0.142 Sum_probs=282.3
Q ss_pred cEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccC
Q 012103 93 HKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGD 171 (471)
Q Consensus 93 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 171 (471)
+.++.+++.++ .+|..+. +++++|++++|.+++..+ .+.++++|++|++++|.+++..| ..+.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP-GAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeCh-hhhhCCccCCEEECCC
Confidence 56777777776 4565543 589999999999999877 89999999999999999998888 8899999999999999
Q ss_pred CCCCCCCCC-ccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeecccccccc
Q 012103 172 NPFDPTPFP-DQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGK 250 (471)
Q Consensus 172 n~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 250 (471)
|.+. .+| ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+.++++|++|++++|.+++.
T Consensus 90 n~l~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 90 NRLK--LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp SCCC--SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CcCC--ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 9984 334 4578899999999999999988888899999999999999999888888899999999999999999876
Q ss_pred CCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCC
Q 012103 251 LPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSW 329 (471)
Q Consensus 251 ~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~ 329 (471)
.+..+..+++|+.|++++|.+.+..+ .+..+++|++|++++|...+.++.......+|++|++++|.+++..+..+..+
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 247 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc
Confidence 66678889999999999999887666 78888999999999988887777776666789999999998885444567888
Q ss_pred CCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeec
Q 012103 330 AEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDI 409 (471)
Q Consensus 330 ~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l 409 (471)
++|+.|++++|.+++..+..+..+++|+.|++++|++.+..+..|..+++|+.|++++|++++..+..|..+++|+.|++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence 89999999999888766677888888999999999888888888888889999999999888666667788888999999
Q ss_pred ccCccccccchhhhccCCCCeeeCCCCcCcccchhhh
Q 012103 410 ALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEI 446 (471)
Q Consensus 410 s~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l 446 (471)
++|++...-+..+ -......+.+.++...-.-|..+
T Consensus 328 ~~N~l~c~c~~~~-~~~~~~~~~~~~~~~~C~~p~~~ 363 (477)
T 2id5_A 328 DSNPLACDCRLLW-VFRRRWRLNFNRQQPTCATPEFV 363 (477)
T ss_dssp CSSCEECSGGGHH-HHTTTTSSCCTTCCCBEEESGGG
T ss_pred cCCCccCccchHh-HHhhhhccccCccCceeCCchHH
Confidence 9988875432111 11223334455555544444443
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=300.02 Aligned_cols=322 Identities=19% Similarity=0.173 Sum_probs=242.9
Q ss_pred CCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEE
Q 012103 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLY 143 (471)
Q Consensus 64 ~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~ 143 (471)
..+++.|+++++.+++ ++ ++.+++|++|++++|.+++. + ++++++|++|++++|.+++. + +..+++|++|+
T Consensus 63 l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~-~~~l~~L~~L~ 133 (457)
T 3bz5_A 63 LTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D-VSQNPLLTYLN 133 (457)
T ss_dssp CTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C-CTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c-CCCCCcCCEEE
Confidence 4679999999999985 44 88999999999999999874 3 88999999999999999985 3 88999999999
Q ss_pred ccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcC
Q 012103 144 LNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNI 223 (471)
Q Consensus 144 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 223 (471)
+++|.+++. .+..+++|++|++++|... ..+ .+..+++|++|++++|.+++ +| +..+++|+.|++++|.+
T Consensus 134 l~~N~l~~l----~l~~l~~L~~L~l~~n~~~-~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l 203 (457)
T 3bz5_A 134 CARNTLTEI----DVSHNTQLTELDCHLNKKI-TKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNI 203 (457)
T ss_dssp CTTSCCSCC----CCTTCTTCCEEECTTCSCC-CCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCC
T ss_pred CCCCcccee----ccccCCcCCEEECCCCCcc-ccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcC
Confidence 999999984 3788999999999999642 223 47789999999999999996 44 88999999999999999
Q ss_pred CCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCC----------c
Q 012103 224 SGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKN----------Q 293 (471)
Q Consensus 224 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n----------~ 293 (471)
++. .++.+++|++|++++|++++ +| +..+++|++|++++|.+++.. ...+++|+.|++++| .
T Consensus 204 ~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~ 275 (457)
T 3bz5_A 204 TKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNT 275 (457)
T ss_dssp SCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCT
T ss_pred Cee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCc
Confidence 864 37889999999999999997 55 889999999999999998764 445566666665544 3
Q ss_pred CccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchh
Q 012103 294 FSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPAT 373 (471)
Q Consensus 294 l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~ 373 (471)
+.+.+| +..+++|+.|++++|...+.+|.. .+.|+.|+ +..+++|+.|++++|++++. +
T Consensus 276 ~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~---~~~L~~L~-------------l~~~~~L~~L~L~~N~l~~l-~-- 334 (457)
T 3bz5_A 276 QLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ---AAGITELD-------------LSQNPKLVYLYLNNTELTEL-D-- 334 (457)
T ss_dssp TCCEEE--CTTCTTCCCCCCTTCTTCCEEECT---TCCCSCCC-------------CTTCTTCCEEECTTCCCSCC-C--
T ss_pred cCCccc--ccccccCCEEECCCCcccceeccC---CCcceEec-------------hhhcccCCEEECCCCccccc-c--
Confidence 333333 234455555555555544444421 12222222 23345777788888877763 2
Q ss_pred hhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhh
Q 012103 374 YANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEI 446 (471)
Q Consensus 374 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l 446 (471)
+..+++|+.|++++|++++ ++.|+.|++++|.+.|. ..+..|..+++++|+++|.+|..+
T Consensus 335 l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 335 VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 6777788888888887774 24556666777777654 245566667777777777776654
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=294.77 Aligned_cols=348 Identities=16% Similarity=0.177 Sum_probs=236.4
Q ss_pred CCCCCCCCCCce-eeceEeCCCCCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeC
Q 012103 43 FSSWVSNNHFCN-FTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDL 121 (471)
Q Consensus 43 ~~~w~~~~~~c~-~~gv~c~~~~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 121 (471)
+++|..+.+||. |.+..|.. ..+.+............ -..+++++.|+++++.+....+..+..+++|++|++
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~-----~~~~i~~~~~~~~~~~~-~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L 76 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVF-----YDVHIDMQTQDVYFGFE-DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76 (390)
T ss_dssp ----CCEECBCC------EEE-----ESCEECSSCCCCEESCS-SGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEEC
T ss_pred cCCCCCccceehhhhhhccce-----eeeeeeccccccccccc-ccccCCceEEEecCCchhhCChhHhcccccCcEEEC
Confidence 568888877775 44444432 11122222111111111 235689999999999987554555788999999999
Q ss_pred CCCcCCccCC-CCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCcc-ccCCCCCCEEEcccccC
Q 012103 122 GNNVFSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQ-VVKLNKLNWLYLTNCSI 199 (471)
Q Consensus 122 ~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-l~~l~~L~~L~l~~n~l 199 (471)
++|.+++..+ .+.++++|++|++++|.+++..+ ..+.++++|++|++++|.+. .+|.. +..+++|++|++++|.+
T Consensus 77 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~l~~L~~L~L~~n~l 153 (390)
T 3o6n_A 77 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLLTVLVLERNDLS--SLPRGIFHNTPKLTTLSMSNNNL 153 (390)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCcccccChhhccCCCCcCEEECCCCCCCcCCH-HHhcCCCCCCEEECCCCccC--cCCHHHhcCCCCCcEEECCCCcc
Confidence 9999998887 88999999999999999998877 77889999999999999884 44544 57888999999999988
Q ss_pred cccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCC
Q 012103 200 DGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVR 279 (471)
Q Consensus 200 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 279 (471)
.+..+..+..+++|++|++++|.+++. .+..+++|+++++++|.+.+ +...+.|++|++++|.+..... .
T Consensus 154 ~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~--~ 223 (390)
T 3o6n_A 154 ERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRG--P 223 (390)
T ss_dssp CBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEEC--C
T ss_pred CccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeeccc--c
Confidence 877777788888899999988888753 24567788888888887763 2344567777777777765432 2
Q ss_pred CCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCcee
Q 012103 280 FLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDL 359 (471)
Q Consensus 280 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L 359 (471)
..++|++|++++|.+++. ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ .+|.....+++|+.|
T Consensus 224 ~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L 300 (390)
T 3o6n_A 224 VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVL 300 (390)
T ss_dssp CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEE
T ss_pred ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEE
Confidence 236677777777777643 45666677777777777776666666666777777777777665 345555556666666
Q ss_pred eccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCcccc
Q 012103 360 LMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEG 416 (471)
Q Consensus 360 ~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~ 416 (471)
++++|++. .+|..+..+++|+.|++++|++++ ++ +..+++|+.|++++|++..
T Consensus 301 ~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 301 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp ECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEH
T ss_pred ECCCCcce-ecCccccccCcCCEEECCCCccce-eC--chhhccCCEEEcCCCCccc
Confidence 66666666 445555666666666666666652 22 4455666666666666654
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-36 Score=299.72 Aligned_cols=348 Identities=16% Similarity=0.135 Sum_probs=296.2
Q ss_pred EEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEccCC
Q 012103 69 EIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLS 147 (471)
Q Consensus 69 ~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n 147 (471)
.++.++.+++ .+|.. + .++++.|++++|.+++..+..|.++++|++|++++|.+++..+ .+.++++|++|++++|
T Consensus 15 ~v~c~~~~l~-~ip~~-~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEG-I--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp EEECCSCCCS-SCCSC-C--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-cCCCC-C--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 3555566666 66653 2 3689999999999998888899999999999999999999877 8999999999999999
Q ss_pred CCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcC
Q 012103 148 GFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEI 227 (471)
Q Consensus 148 ~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 227 (471)
.+++..+ ..+.++++|++|++++|.+. ...+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..
T Consensus 91 ~l~~~~~-~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 91 RLKLIPL-GVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp CCCSCCT-TSSTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred cCCccCc-ccccCCCCCCEEECCCCccc-cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 9998766 77899999999999999983 445678899999999999999999888889999999999999999999766
Q ss_pred CccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCccccchhccCCC
Q 012103 228 PSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEVPAELGKFK 306 (471)
Q Consensus 228 p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 306 (471)
+..+.++++|++|++++|.+.+..+..+..+++|++|++++|...+..+ ......+|++|++++|.+++..+..+..++
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence 6778999999999999999998888889999999999999988776655 455556999999999999965556889999
Q ss_pred CCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEcc
Q 012103 307 KLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVS 386 (471)
Q Consensus 307 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 386 (471)
+|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..+..|..+++|++|+++
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence 99999999999998777888999999999999999998889999999999999999999998777888999999999999
Q ss_pred CCcCcccccccccCCCCCCEeecccCccccccchhhh
Q 012103 387 NNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIE 423 (471)
Q Consensus 387 ~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~ 423 (471)
+|.+....+.. +-......+.+.++...-..|..+.
T Consensus 329 ~N~l~c~c~~~-~~~~~~~~~~~~~~~~~C~~p~~~~ 364 (477)
T 2id5_A 329 SNPLACDCRLL-WVFRRRWRLNFNRQQPTCATPEFVQ 364 (477)
T ss_dssp SSCEECSGGGH-HHHTTTTSSCCTTCCCBEEESGGGT
T ss_pred CCCccCccchH-hHHhhhhccccCccCceeCCchHHc
Confidence 99998553321 1112233345555554444444443
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-36 Score=307.78 Aligned_cols=349 Identities=16% Similarity=0.169 Sum_probs=275.0
Q ss_pred CCCCCCCCCCCCCce----eeceEeCCCCCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCC
Q 012103 40 SSIFSSWVSNNHFCN----FTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVK 115 (471)
Q Consensus 40 ~~~~~~w~~~~~~c~----~~gv~c~~~~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 115 (471)
+..+++|..+.+||. |.++.|+. .++.........+. -..+.+++.+++++|.+....+..+.++++
T Consensus 6 ~~~l~~~~~~~~C~~~~~~~~c~~~~~------~i~~~~~~~~~~~~---~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~ 76 (597)
T 3oja_B 6 RYNVKPRQPEYKCIDSNLQYDCVFYDV------HIDMQTQDVYFGFE---DITLNNQKIVTFKNSTMRKLPAALLDSFRQ 76 (597)
T ss_dssp -----CCCSEECCCCC--CCSEEECSC------EECSSCCCCEESCS---SGGGCCCSEEEESSCEESEECTHHHHHCCC
T ss_pred cccccCCCCCCcCcccCcCceeEecCc------eecccccccccCcc---cccCCCceEEEeeCCCCCCcCHHHHccCCC
Confidence 356789988888774 65555542 12222222221111 234678999999999988665666888999
Q ss_pred CCEEeCCCCcCCccCC-CCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCc-cccCCCCCCEEE
Q 012103 116 LQYLDLGNNVFSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPD-QVVKLNKLNWLY 193 (471)
Q Consensus 116 L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~l~~l~~L~~L~ 193 (471)
|++|++++|.+++.++ .+..+++|++|++++|.+++..+ ..++++++|++|++++|.+. .+|. .+..+++|++|+
T Consensus 77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLLTVLVLERNDLS--SLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEE
T ss_pred CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH-HHHcCCCCCCEEEeeCCCCC--CCCHHHhccCCCCCEEE
Confidence 9999999999999888 89999999999999999998877 78899999999999999984 4454 468899999999
Q ss_pred cccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCcc
Q 012103 194 LTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEG 273 (471)
Q Consensus 194 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 273 (471)
+++|.+.+..|..+..+++|+.|++++|.+++. + +..+++|++|++++|.+.+ +...++|+.|++++|.+..
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~ 225 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINV 225 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCE
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccc
Confidence 999999988888899999999999999998854 2 5567889999999988874 3456688999999998876
Q ss_pred ccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCC
Q 012103 274 DLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKR 353 (471)
Q Consensus 274 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~ 353 (471)
..... .++|+.|++++|.+++ +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++ +|..+..+
T Consensus 226 ~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l 300 (597)
T 3oja_B 226 VRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPI 300 (597)
T ss_dssp EECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCC
T ss_pred ccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccC
Confidence 54432 3689999999998885 3667888899999999999988888888888999999999998874 67777778
Q ss_pred CCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccc
Q 012103 354 GTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGP 417 (471)
Q Consensus 354 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~ 417 (471)
++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+. + +..+++|+.|++++|++.+.
T Consensus 301 ~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 301 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence 88999999999888 5777778888899999999988843 3 56778888899988888764
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-35 Score=287.83 Aligned_cols=349 Identities=23% Similarity=0.305 Sum_probs=251.7
Q ss_pred CCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEc
Q 012103 65 SFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYL 144 (471)
Q Consensus 65 ~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l 144 (471)
..++++++++++++ .+|.. .++|++|++++|.+++ +|.. .++|++|++++|.+++.... .++|++|++
T Consensus 71 ~~l~~L~l~~~~l~-~lp~~----~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L 138 (454)
T 1jl5_A 71 RQAHELELNNLGLS-SLPEL----PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGV 138 (454)
T ss_dssp HTCSEEECTTSCCS-CCCSC----CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEEC
T ss_pred cCCCEEEecCCccc-cCCCC----cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCC---CCCCCEEEC
Confidence 34788999999988 45542 4789999999999987 6643 47899999999999864332 169999999
Q ss_pred cCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCC
Q 012103 145 NLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNIS 224 (471)
Q Consensus 145 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 224 (471)
++|.+++ .| .++++++|++|++++|++. .+|... .+|++|++++|.+++ +| .+..+++|+.|++++|.++
T Consensus 139 ~~n~l~~-lp--~~~~l~~L~~L~l~~N~l~--~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 139 SNNQLEK-LP--ELQNSSFLKIIDVDNNSLK--KLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp CSSCCSS-CC--CCTTCTTCCEEECCSSCCS--CCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS
T ss_pred cCCCCCC-Cc--ccCCCCCCCEEECCCCcCc--ccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC
Confidence 9999997 55 5899999999999999984 355433 589999999999986 56 6899999999999999998
Q ss_pred CcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccC
Q 012103 225 GEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGK 304 (471)
Q Consensus 225 ~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 304 (471)
+ +|.. ..+|++|++++|.+. .+|. +..+++|++|++++|.+.+... .+++|++|++++|.+++ +|..
T Consensus 209 ~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~~-l~~~--- 275 (454)
T 1jl5_A 209 K-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTD-LPEL--- 275 (454)
T ss_dssp S-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSC-CCCC---
T ss_pred c-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCcccc-cCcc---
Confidence 5 5543 258999999999998 6774 8899999999999999986433 24889999999999985 5543
Q ss_pred CCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEE
Q 012103 305 FKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFR 384 (471)
Q Consensus 305 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 384 (471)
.++|++|++++|.+++ ++.. .++|++|++++|.+++ ++. ..++|+.|++++|++++ +|.. +++|++|+
T Consensus 276 ~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~ 343 (454)
T 1jl5_A 276 PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLI 343 (454)
T ss_dssp CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-cccc---CCcCCEEE
Confidence 3789999999999986 2221 2689999999999984 332 12589999999999996 5554 58899999
Q ss_pred ccCCcCcccccccccCCCCCCEeecccCcccc--ccchhhhcc-------------CCCCeeeCCCCcCcc--cchhhhh
Q 012103 385 VSNNSLKGTVPAGIWGLPEVNIIDIALNQIEG--PITKDIENA-------------KALNLLFAEYNRLSG--ELPEEIS 447 (471)
Q Consensus 385 L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~--~~~~~~~~l-------------~~L~~L~l~~n~l~~--~~p~~l~ 447 (471)
+++|+++ .+|. .+++|++|++++|++++ .+|..+..+ ++|+.|++++|++++ .+|.+
T Consensus 344 L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s-- 417 (454)
T 1jl5_A 344 ASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES-- 417 (454)
T ss_dssp CCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------------------
T ss_pred CCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhh--
Confidence 9999999 5776 47899999999999999 788888888 899999999999997 67754
Q ss_pred cCCCCCEEeccCCcCcccCCCCC
Q 012103 448 KATSLVVIKLNNNQLTGKIPASI 470 (471)
Q Consensus 448 ~l~~L~~L~l~~n~~sg~ip~~~ 470 (471)
++.|.+++|.+.+.+|.+.
T Consensus 418 ----l~~L~~~~~~~~~~~~~~~ 436 (454)
T 1jl5_A 418 ----VEDLRMNSERVVDPYEFAH 436 (454)
T ss_dssp -----------------------
T ss_pred ----HhheeCcCcccCCccccCH
Confidence 5677899999998887653
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=283.00 Aligned_cols=311 Identities=18% Similarity=0.131 Sum_probs=214.8
Q ss_pred CCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCC
Q 012103 112 NCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLN 190 (471)
Q Consensus 112 ~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~ 190 (471)
.++++++|+++++.++..++ .+.++++|++|++++|.+.+..+ ..+..+++|++|++++|.+. ...|..+..+++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT-YAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccCh-hhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCC
Confidence 35788999999998887766 46788889999999888887766 67888888888888888873 33356678888888
Q ss_pred EEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCc
Q 012103 191 WLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNF 270 (471)
Q Consensus 191 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 270 (471)
+|++++|.+....+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+++. .+..+++|+++++++|.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence 888888888844444467888888888888888876677778888888888888887743 24566777778877776
Q ss_pred CccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhh
Q 012103 271 LEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDM 350 (471)
Q Consensus 271 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~ 350 (471)
+.+. ...++|++|++++|.+... |.. ..++|++|++++|.+++. ..+..+++|++|++++|.+++..|..+
T Consensus 198 l~~~----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 198 LSTL----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp CSEE----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cccc----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence 6542 2335677777777777633 322 235677777777776642 345666666667766666665556666
Q ss_pred cCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCe
Q 012103 351 CKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNL 430 (471)
Q Consensus 351 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~ 430 (471)
..+++|+.|++++|++++ ++..+..+++|++|++++|++. .+|..+..+++|++|++++|++++. + +..+++|+.
T Consensus 269 ~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~ 343 (390)
T 3o6n_A 269 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKN 343 (390)
T ss_dssp TTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSE
T ss_pred cccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCE
Confidence 666666666666666663 3444455666666666666666 4555555566666666666666543 2 455566666
Q ss_pred eeCCCCcCccc
Q 012103 431 LFAEYNRLSGE 441 (471)
Q Consensus 431 L~l~~n~l~~~ 441 (471)
|++++|++...
T Consensus 344 L~l~~N~~~~~ 354 (390)
T 3o6n_A 344 LTLSHNDWDCN 354 (390)
T ss_dssp EECCSSCEEHH
T ss_pred EEcCCCCccch
Confidence 66666666543
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-34 Score=274.96 Aligned_cols=307 Identities=22% Similarity=0.326 Sum_probs=157.7
Q ss_pred ccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCc
Q 012103 86 ICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLV 165 (471)
Q Consensus 86 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 165 (471)
+..+++|++|+++++.+.. ++ .+..+++|++|++++|.+++..+ +.++++|++|++++|.++.. ..+.++++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~---~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDI---SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC---GGGTTCTTCS
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCc---hHHcCCCcCC
Confidence 3445566666666665542 22 35556666666666666654433 55555555555555555542 2455556666
Q ss_pred EEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccc
Q 012103 166 SLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNN 245 (471)
Q Consensus 166 ~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 245 (471)
+|++++|.+.. ++. +..+++|++|++++|.....+ ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|
T Consensus 114 ~L~l~~n~i~~--~~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 114 ELYLNEDNISD--ISP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp EEECTTSCCCC--CGG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred EEECcCCcccC--chh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 66666655521 222 455555555555555433222 225555555555555555542221 444555555555555
Q ss_pred cccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchh
Q 012103 246 QLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQE 325 (471)
Q Consensus 246 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~ 325 (471)
.+.+. +. +..+++|+.+++++|. +.+..+ +..+++|++|++++|.+++..+
T Consensus 188 ~l~~~-~~-~~~l~~L~~L~l~~n~-----------------------l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 188 QIEDI-SP-LASLTSLHYFTAYVNQ-----------------------ITDITP--VANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp CCCCC-GG-GGGCTTCCEEECCSSC-----------------------CCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred ccccc-cc-ccCCCccceeecccCC-----------------------CCCCch--hhcCCcCCEEEccCCccCCCcc--
Confidence 54421 11 3444444444444444 442222 3344445555555554442211
Q ss_pred hcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCC
Q 012103 326 LGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVN 405 (471)
Q Consensus 326 ~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~ 405 (471)
+..+++|++|++++|.+++ + ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|++++..+..+..+++|+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 4444555555555555542 2 2344555555555555555532 2355566666666666666655555566666666
Q ss_pred EeecccCccccccchhhhccCCCCeeeCCCCcCc
Q 012103 406 IIDIALNQIEGPITKDIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 406 ~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 439 (471)
+|++++|++++..| +..+++|+.|++++|.++
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 66666666665444 556666666666666654
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=274.09 Aligned_cols=307 Identities=22% Similarity=0.335 Sum_probs=219.6
Q ss_pred ccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCC
Q 012103 110 LNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKL 189 (471)
Q Consensus 110 ~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L 189 (471)
+..+++|++|+++++.+... +.+..+++|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~-~~~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~i--------------- 100 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI-QGIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKI--------------- 100 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCC---------------
T ss_pred chhcccccEEEEeCCccccc-hhhhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCcc---------------
Confidence 44667777788777777643 345566666666666666554321 55555555555555554
Q ss_pred CEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCC
Q 012103 190 NWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTN 269 (471)
Q Consensus 190 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 269 (471)
.. + ..+..+++|++|++++|.+.+ ++. +..+++|++|++++|......+ .+..+++|++|++++|
T Consensus 101 ----------~~-~-~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~ 165 (347)
T 4fmz_A 101 ----------TD-I-SALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTES 165 (347)
T ss_dssp ----------CC-C-GGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSS
T ss_pred ----------cC-c-hHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCC
Confidence 32 1 124444444555554444442 222 4445555555555553332222 2555666666666666
Q ss_pred cCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchh
Q 012103 270 FLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPD 349 (471)
Q Consensus 270 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~ 349 (471)
.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+++ ++.
T Consensus 166 ~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~- 238 (347)
T 4fmz_A 166 KVKDVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP- 238 (347)
T ss_dssp CCCCCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-
T ss_pred CcCCchh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-
Confidence 6554333 5566778888888887774333 7788999999999999985544 7889999999999999984 444
Q ss_pred hcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCC
Q 012103 350 MCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALN 429 (471)
Q Consensus 350 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~ 429 (471)
+..+++|+.|++++|.+++. ..+..+++|+.|++++|++++ + ..+..+++|+.|++++|++.+..|..+..+++|+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 88899999999999999863 468899999999999999995 4 4588999999999999999999999999999999
Q ss_pred eeeCCCCcCcccchhhhhcCCCCCEEeccCCcCc
Q 012103 430 LLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463 (471)
Q Consensus 430 ~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~s 463 (471)
.|++++|++++..| +..+++|+.|++++|+|+
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 99999999997666 889999999999999986
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=294.92 Aligned_cols=311 Identities=18% Similarity=0.129 Sum_probs=223.2
Q ss_pred CCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCC
Q 012103 112 NCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLN 190 (471)
Q Consensus 112 ~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~ 190 (471)
.+.+++.+++++|.+.+.++ .+.++++|++|++++|.+++..+ ..+..+++|++|++++|.+. ...|..+..+++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT-YAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCCh-HHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCC
Confidence 35788999999999988777 57788999999999999988777 78888899999999998883 33456678888888
Q ss_pred EEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCc
Q 012103 191 WLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNF 270 (471)
Q Consensus 191 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 270 (471)
+|++++|.+++..+..|..+++|+.|++++|.+.+..|..+.++++|++|++++|.+++. .+..+++|+.+++++|.
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 203 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCc
Confidence 888888888855555568888888888888888877777788888888888888888753 24567778888888877
Q ss_pred CccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhh
Q 012103 271 LEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDM 350 (471)
Q Consensus 271 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~ 350 (471)
+.+. ...++|+.|++++|.+....+ .+ .++|+.|++++|.+++ +..+..+++|+.|++++|.+++..|..+
T Consensus 204 l~~l----~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 204 LSTL----AIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp CSEE----ECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cccc----cCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHh
Confidence 6642 234567777777777763322 21 2567777777777764 2456666677777777777766666666
Q ss_pred cCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCe
Q 012103 351 CKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNL 430 (471)
Q Consensus 351 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~ 430 (471)
..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|++.+.. +..+++|+.
T Consensus 275 ~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~ 349 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKN 349 (597)
T ss_dssp TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSE
T ss_pred cCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCE
Confidence 666677777777776664 4455555666777777776666 45555666666667777766666432 455566666
Q ss_pred eeCCCCcCccc
Q 012103 431 LFAEYNRLSGE 441 (471)
Q Consensus 431 L~l~~n~l~~~ 441 (471)
|++++|++.+.
T Consensus 350 L~l~~N~~~~~ 360 (597)
T 3oja_B 350 LTLSHNDWDCN 360 (597)
T ss_dssp EECCSSCEEHH
T ss_pred EEeeCCCCCCh
Confidence 66666666654
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-35 Score=275.52 Aligned_cols=251 Identities=28% Similarity=0.458 Sum_probs=164.4
Q ss_pred CCCEEEcccccCcc--cCCccccCCCCCcEEEccc-CcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEE
Q 012103 188 KLNWLYLTNCSIDG--QIPVEIGNLTELINLELSD-NNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANF 264 (471)
Q Consensus 188 ~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 264 (471)
++++|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..++++++|++|++++|.+++.+|..+.+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~------- 123 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ------- 123 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG-------
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC-------
Confidence 45555555555555 4555555555555555553 5555555555555555555555555555445544444
Q ss_pred eCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCC-CCCEEeccCCccc
Q 012103 265 DASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWA-EFDFIDVSENLLT 343 (471)
Q Consensus 265 ~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~ 343 (471)
+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..++ .|++|++++|.++
T Consensus 124 ----------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 124 ----------------IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp ----------------CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred ----------------CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 45555555555555555566666666666666666666666666666665 6677777777766
Q ss_pred ccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhh
Q 012103 344 GPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIE 423 (471)
Q Consensus 344 ~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~ 423 (471)
+.+|..+..++ |+.|++++|.+.+..|..+..+++|+.|++++|.+++.+|. +..+++|++|++++|++++.+|..+.
T Consensus 188 ~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~ 265 (313)
T 1ogq_A 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp EECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred ccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHh
Confidence 66666666665 77777777777766777777777777777777777755554 66677777888888877777777777
Q ss_pred ccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCc-Ccc
Q 012103 424 NAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQ-LTG 464 (471)
Q Consensus 424 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~-~sg 464 (471)
.+++|+.|++++|+++|.+|.. .++++|+.+++++|+ +.|
T Consensus 266 ~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred cCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 7778888888888887777765 677777888888877 555
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-37 Score=304.45 Aligned_cols=351 Identities=17% Similarity=0.167 Sum_probs=199.6
Q ss_pred CCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCc----cccccccCCCCCCEEeCCCCcCCccCC-C-CCCCC-
Q 012103 65 SFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYG----EISKDLNNCVKLQYLDLGNNVFSGSFP-E-ISSLN- 137 (471)
Q Consensus 65 ~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~-~-l~~l~- 137 (471)
.++++|+++++++........+..+++|++|++++|.++. .++..+..+++|++|++++|.+++..+ . ...++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4688899998888744333336778899999999998874 356677888899999999988875332 1 12233
Q ss_pred ---CCCEEEccCCCCcc----cCCcccccCCCCCcEEEccCCCCCCCC---CCcc-ccCCCCCCEEEcccccCccc----
Q 012103 138 ---ELQHLYLNLSGFSG----VFPWMSLGNMTNLVSLSVGDNPFDPTP---FPDQ-VVKLNKLNWLYLTNCSIDGQ---- 202 (471)
Q Consensus 138 ---~L~~L~l~~n~l~~----~~~~~~~~~l~~L~~L~l~~n~~~~~~---~~~~-l~~l~~L~~L~l~~n~l~~~---- 202 (471)
+|++|++++|.++. ..+ ..+..+++|++|++++|.+.... +... ....++|++|++++|.+++.
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLS-STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHH-HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHH-HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 68888888887774 234 56677777777777777763211 0111 11245677777777766642
Q ss_pred CCccccCCCCCcEEEcccCcCCCcCCcccc-----CCCCCCeEeecccccccc----CCccccCCCCCCEEeCCCCcCcc
Q 012103 203 IPVEIGNLTELINLELSDNNISGEIPSEIG-----NLVKLWRLELYNNQLSGK----LPVGLRNLTNLANFDASTNFLEG 273 (471)
Q Consensus 203 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~ 273 (471)
++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+..
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 244455566777777777766543333332 234666666666666542 34445556666666666666543
Q ss_pred cc-----c-cCCCCCCCCEEEccCCcCccc----cchhccCCCCCCEEEcccCcCcccCchhhc-----CCCCCCEEecc
Q 012103 274 DL-----S-EVRFLTNLVTLQLFKNQFSGE----VPAELGKFKKLVNLSLYTNKLTGALPQELG-----SWAEFDFIDVS 338 (471)
Q Consensus 274 ~~-----~-~~~~~~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~L~ 338 (471)
.. + ....+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+. ..++|++|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 21 1 222355666666666665543 344444555666666666655433222221 12455555555
Q ss_pred CCccccc----CchhhcCCCCCceeeccCCccccccchhhhc-----CCCCcEEEccCCcCcc----cccccccCCCCCC
Q 012103 339 ENLLTGP----IPPDMCKRGTMRDLLMLQNKFTGEIPATYAN-----CLTLQRFRVSNNSLKG----TVPAGIWGLPEVN 405 (471)
Q Consensus 339 ~n~l~~~----~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-----~~~L~~L~L~~n~~~~----~~~~~~~~~~~L~ 405 (471)
+|.+++. ++..+..+++|+.|++++|.+++..+..+.. .++|++|++++|++++ .+|..+..+++|+
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 5555433 3334444455555555555554433332221 3455555555555553 3444444455555
Q ss_pred EeecccCcccc
Q 012103 406 IIDIALNQIEG 416 (471)
Q Consensus 406 ~L~ls~n~~~~ 416 (471)
+|++++|++++
T Consensus 402 ~L~l~~N~i~~ 412 (461)
T 1z7x_W 402 ELDLSNNCLGD 412 (461)
T ss_dssp EEECCSSSCCH
T ss_pred EEECCCCCCCH
Confidence 55555555543
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=301.83 Aligned_cols=377 Identities=16% Similarity=0.108 Sum_probs=292.1
Q ss_pred CCCCcEEeCCCCCCCccccc-cccCCCCCCEEeCCCCcCCcc----CC-CCCCCCCCCEEEccCCCCcccCCcccccCCC
Q 012103 89 LQALHKLSLGFNSLYGEISK-DLNNCVKLQYLDLGNNVFSGS----FP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMT 162 (471)
Q Consensus 89 l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~----~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 162 (471)
.++|++|++++|.++..... .+..+++|++|++++|.+++. ++ .+..+++|++|++++|.+....+......++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 35789999999999754433 378899999999999999853 23 5778899999999999987643312233444
Q ss_pred ----CCcEEEccCCCCCC---CCCCccccCCCCCCEEEcccccCcccCCcccc-----CCCCCcEEEcccCcCCCcC---
Q 012103 163 ----NLVSLSVGDNPFDP---TPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIG-----NLTELINLELSDNNISGEI--- 227 (471)
Q Consensus 163 ----~L~~L~l~~n~~~~---~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~--- 227 (471)
+|++|++++|.++. ..++..+..+++|++|++++|.+....+..+. ..++|++|++++|.+++..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999999843 23577888999999999999998754443332 3568999999999988643
Q ss_pred -CccccCCCCCCeEeeccccccccCCcccc-----CCCCCCEEeCCCCcCccc----cc-cCCCCCCCCEEEccCCcCcc
Q 012103 228 -PSEIGNLVKLWRLELYNNQLSGKLPVGLR-----NLTNLANFDASTNFLEGD----LS-EVRFLTNLVTLQLFKNQFSG 296 (471)
Q Consensus 228 -p~~~~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~~~~~----~~-~~~~~~~L~~L~l~~n~l~~ 296 (471)
+..+..+++|++|++++|.+....+..+. ..++|++|++++|.+++. ++ .+..+++|++|++++|.+++
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 55667789999999999998755444443 367999999999998864 22 56678999999999999886
Q ss_pred cc-----chhccCCCCCCEEEcccCcCccc----CchhhcCCCCCCEEeccCCcccccCchhhcC-----CCCCceeecc
Q 012103 297 EV-----PAELGKFKKLVNLSLYTNKLTGA----LPQELGSWAEFDFIDVSENLLTGPIPPDMCK-----RGTMRDLLML 362 (471)
Q Consensus 297 ~~-----~~~l~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~-----~~~L~~L~l~ 362 (471)
.. +.....+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|+.|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 43 22333578999999999999864 5667778899999999999987554443332 3699999999
Q ss_pred CCccccc----cchhhhcCCCCcEEEccCCcCccccccccc----C-CCCCCEeecccCcccc----ccchhhhccCCCC
Q 012103 363 QNKFTGE----IPATYANCLTLQRFRVSNNSLKGTVPAGIW----G-LPEVNIIDIALNQIEG----PITKDIENAKALN 429 (471)
Q Consensus 363 ~n~~~~~----~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~----~-~~~L~~L~ls~n~~~~----~~~~~~~~l~~L~ 429 (471)
+|.+++. ++..+..+++|++|++++|.+++..+..+. . .++|++|++++|++++ .+|..+..+++|+
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 9999865 566778889999999999999865444333 2 6799999999999987 7888889999999
Q ss_pred eeeCCCCcCcccchhhhhc-----CCCCCEEeccCCcCccc
Q 012103 430 LLFAEYNRLSGELPEEISK-----ATSLVVIKLNNNQLTGK 465 (471)
Q Consensus 430 ~L~l~~n~l~~~~p~~l~~-----l~~L~~L~l~~n~~sg~ 465 (471)
+|++++|++++.....+.. ..+|+.|++.++.+...
T Consensus 402 ~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~ 442 (461)
T 1z7x_W 402 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442 (461)
T ss_dssp EEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred EEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence 9999999998654433332 34689999988887643
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=272.15 Aligned_cols=279 Identities=19% Similarity=0.206 Sum_probs=196.3
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCC----CCCCCCceeeceEeCC--------CCCCEEEEEcCCCCCccccCcccc
Q 012103 19 CINSDELQILLNLKTSLKDSKSSIFSSW----VSNNHFCNFTGITCNS--------DSSFVQEIELSNRNLKGTLPFDSI 86 (471)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w----~~~~~~c~~~gv~c~~--------~~~~v~~L~L~~~~l~g~l~~~~~ 86 (471)
++..+|++||++||+++..+..+....| ....++|.|.|+.|+. ...+|+.|+|+++.+. .+|.. +
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~-l 100 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQ-A 100 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSC-G
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChh-h
Confidence 4556899999999998843333556788 4567899999999952 2467889999998888 77766 7
Q ss_pred cCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCcE
Q 012103 87 CQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVS 166 (471)
Q Consensus 87 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 166 (471)
..+++|++|++++|.++ .+|..+.++++|++|++++|.++..+..+.++++|++|++++|.+.+..| ..+..
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p-~~~~~------ 172 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELP-EPLAS------ 172 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCC-SCSEE------
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccC-hhHhh------
Confidence 77888888888888888 78888888888888888888888443377788888888888877777666 33322
Q ss_pred EEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeecccc
Q 012103 167 LSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQ 246 (471)
Q Consensus 167 L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 246 (471)
...+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.
T Consensus 173 ----------~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 173 ----------TDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCT 240 (328)
T ss_dssp ----------EC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCT
T ss_pred ----------ccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCc
Confidence 001122334556666666666665 55555666666666666666666 344456666666666666666
Q ss_pred ccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCc
Q 012103 247 LSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLT 319 (471)
Q Consensus 247 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~ 319 (471)
+.+.+|..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+.+.+|..+.++++++.+++..+.+.
T Consensus 241 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred chhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 666666666666666666666666665555 5666777777777777777777777777888888877765554
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-32 Score=257.57 Aligned_cols=268 Identities=21% Similarity=0.218 Sum_probs=172.7
Q ss_pred CCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeC
Q 012103 187 NKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDA 266 (471)
Q Consensus 187 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 266 (471)
+++++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++++|.++ .+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence 35555555555555444445555555555555555555544555555555666666555555 3333322 45666666
Q ss_pred CCCcCccccc-cCCCCCCCCEEEccCCcCcc--ccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCccc
Q 012103 267 STNFLEGDLS-EVRFLTNLVTLQLFKNQFSG--EVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLT 343 (471)
Q Consensus 267 ~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~--~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 343 (471)
++|.+.+..+ .+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++ .+|..+. ++|++|++++|.++
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKIT 205 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCC
Confidence 6666655444 45566666666666666642 44556666777777777777776 3444332 57777777777777
Q ss_pred ccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhh
Q 012103 344 GPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIE 423 (471)
Q Consensus 344 ~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~ 423 (471)
+..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+.
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence 666677777777777777777777666667777788888888888877 6777777778888888888888766555554
Q ss_pred c------cCCCCeeeCCCCcCcc--cchhhhhcCCCCCEEeccCCc
Q 012103 424 N------AKALNLLFAEYNRLSG--ELPEEISKATSLVVIKLNNNQ 461 (471)
Q Consensus 424 ~------l~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~l~~n~ 461 (471)
. .+.++.+++++|.+.. ..|..+..++.++.+++++|+
T Consensus 285 ~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 3 3677788888888753 556677778888888888875
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-31 Score=254.12 Aligned_cols=293 Identities=16% Similarity=0.154 Sum_probs=152.9
Q ss_pred CCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEc
Q 012103 91 ALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSV 169 (471)
Q Consensus 91 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 169 (471)
+++.++++++.+. .+|..+. +.|++|++++|.+++..+ .+.++++|++|++++|.+++..| ..+.++++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-GAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCH-HHhcCCCCCCEEEC
Confidence 5666666666665 3444332 466666666666666555 56666666666666666665545 45555555555555
Q ss_pred cCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccc
Q 012103 170 GDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSG 249 (471)
Q Consensus 170 ~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 249 (471)
++|.+. .+|..+. ++|++|+ +++|.+.+..+..+.++++|++|++++|.+..
T Consensus 108 s~n~l~--~l~~~~~--~~L~~L~------------------------l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 159 (330)
T 1xku_A 108 SKNQLK--ELPEKMP--KTLQELR------------------------VHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159 (330)
T ss_dssp CSSCCS--BCCSSCC--TTCCEEE------------------------CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred CCCcCC--ccChhhc--ccccEEE------------------------CCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence 555552 2232222 3444444 44444443333334444444444444444431
Q ss_pred --cCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhc
Q 012103 250 --KLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELG 327 (471)
Q Consensus 250 --~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~ 327 (471)
..+..+..+++|++|++++|.+......+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 160 SGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp GGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred cCcChhhccCCCCcCEEECCCCccccCCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence 33444555555555555555554332222 15566666666666655556666666666666666666655555555
Q ss_pred CCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEe
Q 012103 328 SWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNII 407 (471)
Q Consensus 328 ~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L 407 (471)
.+++|++|++++|.++ .+|..+..+++|+.|++++|++++..+..|.... .....+.++.+
T Consensus 238 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~l 298 (330)
T 1xku_A 238 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSGV 298 (330)
T ss_dssp GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSEE
T ss_pred CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcc------------------cccccccccce
Confidence 6666666666666665 5555555555566666666655544333332210 00012344555
Q ss_pred ecccCcccc--ccchhhhccCCCCeeeCCCC
Q 012103 408 DIALNQIEG--PITKDIENAKALNLLFAEYN 436 (471)
Q Consensus 408 ~ls~n~~~~--~~~~~~~~l~~L~~L~l~~n 436 (471)
++++|++.. ..|..+..+..++.+++++|
T Consensus 299 ~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp ECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred EeecCcccccccCccccccccceeEEEeccc
Confidence 555555432 33445555555555555555
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-32 Score=259.31 Aligned_cols=267 Identities=21% Similarity=0.233 Sum_probs=170.8
Q ss_pred CCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeC
Q 012103 187 NKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDA 266 (471)
Q Consensus 187 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 266 (471)
++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+.++++|++|++++|.++ .+|..+. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence 35555555555555444445555555555555555555444555555555555555555555 3333332 55666666
Q ss_pred CCCcCccccc-cCCCCCCCCEEEccCCcCcc--ccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCccc
Q 012103 267 STNFLEGDLS-EVRFLTNLVTLQLFKNQFSG--EVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLT 343 (471)
Q Consensus 267 ~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~--~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 343 (471)
++|.+.+..+ .+..+++|++|++++|.++. ..+..+..+ +|++|++++|.+++ +|..+. ++|++|++++|.++
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQ 206 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCC
Confidence 6666654444 45556666666666666642 444555555 67777777777763 444332 56777777777777
Q ss_pred ccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhh
Q 012103 344 GPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIE 423 (471)
Q Consensus 344 ~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~ 423 (471)
+..|..+..+++|+.|++++|++.+..+..+..+++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..+.
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence 665666777777777777777777666667777778888888888777 6777777777888888888887766655554
Q ss_pred c------cCCCCeeeCCCCcCc--ccchhhhhcCCCCCEEeccCCc
Q 012103 424 N------AKALNLLFAEYNRLS--GELPEEISKATSLVVIKLNNNQ 461 (471)
Q Consensus 424 ~------l~~L~~L~l~~n~l~--~~~p~~l~~l~~L~~L~l~~n~ 461 (471)
. .+.|+.|++++|.+. +..|..+..+++|+.+++++|+
T Consensus 286 ~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 4 356778888888876 5677778888888888888875
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=256.05 Aligned_cols=289 Identities=18% Similarity=0.165 Sum_probs=136.6
Q ss_pred CCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEc
Q 012103 91 ALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSV 169 (471)
Q Consensus 91 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 169 (471)
+++.++++++.++ .+|..+. ++|++|++++|.+++..+ .+.++++|++|++++|.+++..| ..+.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE-KAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG-GGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH-hHhhCcCCCCEEEC
Confidence 5666666666665 4444432 466666666666666555 56666666666666666665545 55556666666666
Q ss_pred cCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccc
Q 012103 170 GDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSG 249 (471)
Q Consensus 170 ~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 249 (471)
++|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.++. .+
T Consensus 110 ~~n~l~--~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~ 163 (332)
T 2ft3_A 110 SKNHLV--EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN----------------------SG 163 (332)
T ss_dssp CSSCCC--SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG----------------------GG
T ss_pred CCCcCC--ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc----------------------CC
Confidence 666552 2333322 445555555554443333334444444444444444431 01
Q ss_pred cCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCC
Q 012103 250 KLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSW 329 (471)
Q Consensus 250 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~ 329 (471)
..+..+..+ +|++|++++|.+++.+..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+
T Consensus 164 ~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 240 (332)
T 2ft3_A 164 FEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240 (332)
T ss_dssp SCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred CCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence 222222222 33333333333332211111 344444444444443333444444444444444444443333334444
Q ss_pred CCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccC------CCC
Q 012103 330 AEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWG------LPE 403 (471)
Q Consensus 330 ~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~------~~~ 403 (471)
++|++|++++|.++ .+|.. +..+++|+.|++++|++++..+..+.. .+.
T Consensus 241 ~~L~~L~L~~N~l~-~lp~~------------------------l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 295 (332)
T 2ft3_A 241 PTLRELHLDNNKLS-RVPAG------------------------LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY 295 (332)
T ss_dssp TTCCEEECCSSCCC-BCCTT------------------------GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCC
T ss_pred CCCCEEECCCCcCe-ecChh------------------------hhcCccCCEEECCCCCCCccChhHcccccccccccc
Confidence 44444444444443 34443 444444444444444444322222222 244
Q ss_pred CCEeecccCccc--cccchhhhccCCCCeeeCCCCc
Q 012103 404 VNIIDIALNQIE--GPITKDIENAKALNLLFAEYNR 437 (471)
Q Consensus 404 L~~L~ls~n~~~--~~~~~~~~~l~~L~~L~l~~n~ 437 (471)
|+.|++++|++. +..|..+..+++|+.+++++|+
T Consensus 296 l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 566666666655 4455556666666666666653
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=248.38 Aligned_cols=280 Identities=20% Similarity=0.235 Sum_probs=198.0
Q ss_pred CCCCCCCceeeceEeCCCCCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCc
Q 012103 46 WVSNNHFCNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNV 125 (471)
Q Consensus 46 w~~~~~~c~~~gv~c~~~~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 125 (471)
|......|.|.++ |+ +++++++ .+|.. + .++|++|++++|.+++..+..+.++++|++|++++|.
T Consensus 23 ~~~~~~~C~~~~~-c~----------~~~~~l~-~iP~~-~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 87 (353)
T 2z80_A 23 SNQASLSCDRNGI-CK----------GSSGSLN-SIPSG-L--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 87 (353)
T ss_dssp ----CCEECTTSE-EE----------CCSTTCS-SCCTT-C--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CCccCCCCCCCeE-ee----------CCCCCcc-ccccc-c--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc
Confidence 4445667888776 54 4566776 67754 3 3589999999999987666689999999999999999
Q ss_pred CCccCC-CCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCc--cccCCCCCCEEEccccc-Ccc
Q 012103 126 FSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPD--QVVKLNKLNWLYLTNCS-IDG 201 (471)
Q Consensus 126 l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~l~~l~~L~~L~l~~n~-l~~ 201 (471)
+++..+ .+.++++|++|++++|.+++..+ ..+.++++|++|++++|.+. .+|. .+..+++|++|++++|. +..
T Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~~l~~L~~L~l~~n~~~~~ 164 (353)
T 2z80_A 88 INTIEEDSFSSLGSLEHLDLSYNYLSNLSS-SWFKPLSSLTFLNLLGNPYK--TLGETSLFSHLTKLQILRVGNMDTFTK 164 (353)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSSCCH-HHHTTCTTCSEEECTTCCCS--SSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred cCccCHhhcCCCCCCCEEECCCCcCCcCCH-hHhCCCccCCEEECCCCCCc--ccCchhhhccCCCCcEEECCCCccccc
Confidence 998877 78999999999999999987655 56889999999999999984 3444 67889999999999984 666
Q ss_pred cCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc----c
Q 012103 202 QIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS----E 277 (471)
Q Consensus 202 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~----~ 277 (471)
..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.......+..+++|++|++++|.+.+... .
T Consensus 165 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 244 (353)
T 2z80_A 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244 (353)
T ss_dssp ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC----
T ss_pred cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc
Confidence 666788888999999999999888778888888899999999888864333334567888888888887775432 1
Q ss_pred CCCCCCCCEEEccCCcCcc----ccchhccCCCCCCEEEcccCcCcccCchh-hcCCCCCCEEeccCCcccc
Q 012103 278 VRFLTNLVTLQLFKNQFSG----EVPAELGKFKKLVNLSLYTNKLTGALPQE-LGSWAEFDFIDVSENLLTG 344 (471)
Q Consensus 278 ~~~~~~L~~L~l~~n~l~~----~~~~~l~~~~~L~~L~L~~n~l~~~~~~~-~~~~~~L~~L~L~~n~l~~ 344 (471)
......++.++++++.+.+ .+|..+..+++|++|++++|.++ .+|.. +..+++|++|++++|.+++
T Consensus 245 ~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp --CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence 2223445555555555543 23344444455555555555544 23332 2444444444444444443
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-33 Score=284.63 Aligned_cols=376 Identities=14% Similarity=0.067 Sum_probs=279.4
Q ss_pred CCCCCcEEeCCCCCCCccccccccC-CC-CCCEEeCCCCcC-Cc-cCC-CCCCCCCCCEEEccCCCCcccCC---ccccc
Q 012103 88 QLQALHKLSLGFNSLYGEISKDLNN-CV-KLQYLDLGNNVF-SG-SFP-EISSLNELQHLYLNLSGFSGVFP---WMSLG 159 (471)
Q Consensus 88 ~l~~L~~L~l~~~~~~~~~~~~~~~-l~-~L~~L~l~~n~l-~~-~~~-~l~~l~~L~~L~l~~n~l~~~~~---~~~~~ 159 (471)
.+++|++|++++|.+++..+..+.. ++ +|++|++++|.- +. ..+ ...++++|++|++++|.+++... .....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 6888999999998887766666655 34 499999988862 11 111 23478899999999998765422 02456
Q ss_pred CCCCCcEEEccCCCCCC---CCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCC---CcCCccccC
Q 012103 160 NMTNLVSLSVGDNPFDP---TPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNIS---GEIPSEIGN 233 (471)
Q Consensus 160 ~l~~L~~L~l~~n~~~~---~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~---~~~p~~~~~ 233 (471)
.+++|++|++++|.+.. ..++..+..+++|++|++++|.+.+ ++..+..+++|+.|++++.... +..+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 78899999999988741 2234455678999999999988875 6677888899999999864322 234456677
Q ss_pred CCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc--cCCCCCCCCEEEccCCcCccccchhccCCCCCCEE
Q 012103 234 LVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS--EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNL 311 (471)
Q Consensus 234 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L 311 (471)
+++|+++.+.++.. +.++..+..+++|++|++++|.+.+... .+..+++|++|+++++...+.++.....+++|++|
T Consensus 269 ~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 269 PRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp CTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred cccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence 88999999887543 3567778889999999999998764433 46788999999999443333444555678899999
Q ss_pred Ecc-----------cCcCccc-CchhhcCCCCCCEEeccCCcccccCchhhcC-CCCCceeecc----CCccccc-----
Q 012103 312 SLY-----------TNKLTGA-LPQELGSWAEFDFIDVSENLLTGPIPPDMCK-RGTMRDLLML----QNKFTGE----- 369 (471)
Q Consensus 312 ~L~-----------~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~-~~~L~~L~l~----~n~~~~~----- 369 (471)
+++ .+.+++. ++.....+++|++|+++.+.+++..+..+.. +++|+.|+++ .|.+++.
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 999 3566643 2333456899999999989998777777665 8899999996 6677753
Q ss_pred cchhhhcCCCCcEEEccCCc--Ccccccccc-cCCCCCCEeecccCccccc-cchhhhccCCCCeeeCCCCcCccc-chh
Q 012103 370 IPATYANCLTLQRFRVSNNS--LKGTVPAGI-WGLPEVNIIDIALNQIEGP-ITKDIENAKALNLLFAEYNRLSGE-LPE 444 (471)
Q Consensus 370 ~~~~~~~~~~L~~L~L~~n~--~~~~~~~~~-~~~~~L~~L~ls~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~-~p~ 444 (471)
++..+..+++|+.|++++|. +++..+..+ ..+++|++|++++|++++. ++..+.++++|+.|++++|.+++. ++.
T Consensus 428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 507 (592)
T 3ogk_B 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA 507 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence 44557789999999998644 665544444 3488999999999999873 455667899999999999998755 455
Q ss_pred hhhcCCCCCEEeccCCcCccc
Q 012103 445 EISKATSLVVIKLNNNQLTGK 465 (471)
Q Consensus 445 ~l~~l~~L~~L~l~~n~~sg~ 465 (471)
.+..+++|+.|++++|++++.
T Consensus 508 ~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 508 AVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHCSSCCEEEEESCBCCTT
T ss_pred HHHhcCccCeeECcCCcCCHH
Confidence 567899999999999999864
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-30 Score=245.31 Aligned_cols=276 Identities=14% Similarity=0.095 Sum_probs=149.8
Q ss_pred CCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeE
Q 012103 161 MTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRL 240 (471)
Q Consensus 161 l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 240 (471)
++.....+.+++.+ ..+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+++..|..+.++++|++|
T Consensus 30 C~~~~~c~~~~~~l--~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSL--NSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTC--SSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCc--cccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 34445566666666 33454433 467777777777765555566677777777777777766556666666777777
Q ss_pred eeccccccccCCccccCCCCCCEEeCCCCcCccccc--cCCCCCCCCEEEccCCc-CccccchhccCCCCCCEEEcccCc
Q 012103 241 ELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS--EVRFLTNLVTLQLFKNQ-FSGEVPAELGKFKKLVNLSLYTNK 317 (471)
Q Consensus 241 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~L~~L~L~~n~ 317 (471)
++++|.+++..+..+.++++|++|++++|.+.+... .+..+++|++|++++|. +.+..+..+..+++|++|++++|.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 777776664433446666666666666666664433 45556666666666663 444444555556666666666666
Q ss_pred CcccCchhhcCCCCCCEEeccCCcccccCchh-hcCCCCCceeeccCCccccccchhh---hcCCCCcEEEccCCcCcc-
Q 012103 318 LTGALPQELGSWAEFDFIDVSENLLTGPIPPD-MCKRGTMRDLLMLQNKFTGEIPATY---ANCLTLQRFRVSNNSLKG- 392 (471)
Q Consensus 318 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~-~~~~~~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L~L~~n~~~~- 392 (471)
+.+..|..+..+++|++|++++|.++ .+|.. +..+++|+.|++++|.+++..+..+ .....++.++++++.+.+
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred cCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence 66555555556666666666666554 33332 2235555566665555554332222 123344444444444443
Q ss_pred ---cccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCccc
Q 012103 393 ---TVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGE 441 (471)
Q Consensus 393 ---~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 441 (471)
.+|..+..+++|++|++++|+++...+..+.++++|+.|++++|++.+.
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred chhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 2334444444444444444444422112234444444444444444433
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-29 Score=234.66 Aligned_cols=262 Identities=18% Similarity=0.181 Sum_probs=186.4
Q ss_pred CCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCc--CCccccCCCCCCeEeeccccccccCCccccCCCCCCEE
Q 012103 187 NKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGE--IPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANF 264 (471)
Q Consensus 187 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 264 (471)
++|++|++++|.++...+..|..+++|++|++++|.+... .+..+..+++|++|++++|.+. .++..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 4666666666666633333456667777777777766522 2455556677777777777766 355556677777777
Q ss_pred eCCCCcCccccc--cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcc-cCchhhcCCCCCCEEeccCCc
Q 012103 265 DASTNFLEGDLS--EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTG-ALPQELGSWAEFDFIDVSENL 341 (471)
Q Consensus 265 ~l~~n~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~L~~n~ 341 (471)
++++|.+.+..+ .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 777777765543 56677788888888888777777777778888888888888875 467777778888888888888
Q ss_pred ccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCC-CCCEeecccCccccccc-
Q 012103 342 LTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLP-EVNIIDIALNQIEGPIT- 419 (471)
Q Consensus 342 l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~-~L~~L~ls~n~~~~~~~- 419 (471)
+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..|..+..++ +|++|++++|++.+..+
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 8766677777788888888888888876666778888888888888888877777777774 78888888888876422
Q ss_pred -hhhhccCCCCeeeCCCCcCcccchhhhhcC
Q 012103 420 -KDIENAKALNLLFAEYNRLSGELPEEISKA 449 (471)
Q Consensus 420 -~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l 449 (471)
....-+...+.+.+..+.+....|..+...
T Consensus 267 ~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~ 297 (306)
T 2z66_A 267 QSFLQWIKDQRQLLVEVERMECATPSDKQGM 297 (306)
T ss_dssp HHHHHHHHHTGGGBSCGGGCBEEESGGGTTC
T ss_pred HHHHHHHHhhhhhhccccccccCCchhhCCc
Confidence 222233445556667777777777776553
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.7e-30 Score=239.57 Aligned_cols=278 Identities=16% Similarity=0.152 Sum_probs=219.0
Q ss_pred CEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeecccccccc--CCccccCCCCCCEEeCC
Q 012103 190 NWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGK--LPVGLRNLTNLANFDAS 267 (471)
Q Consensus 190 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~ 267 (471)
+.++.+++.++ .+|..+. +++++|++++|.++...+..+.++++|++|++++|.++.. .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 46777777776 4555443 6899999999999854444578899999999999988733 35667778999999999
Q ss_pred CCcCccccccCCCCCCCCEEEccCCcCccccc-hhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccc-c
Q 012103 268 TNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVP-AELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTG-P 345 (471)
Q Consensus 268 ~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~ 345 (471)
+|.+......+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 99888665577788999999999999886544 567888899999999999988778888888999999999998876 5
Q ss_pred CchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhcc
Q 012103 346 IPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENA 425 (471)
Q Consensus 346 ~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l 425 (471)
+|..+..+++|+.|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..+
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 77788888899999999999888778888888999999999999987666678888899999999999988888888887
Q ss_pred C-CCCeeeCCCCcCcccch--hhhhcCCCCCEEeccCCcCcccCCCCC
Q 012103 426 K-ALNLLFAEYNRLSGELP--EEISKATSLVVIKLNNNQLTGKIPASI 470 (471)
Q Consensus 426 ~-~L~~L~l~~n~l~~~~p--~~l~~l~~L~~L~l~~n~~sg~ip~~~ 470 (471)
+ +|+.|++++|.+.+.-+ ....-+...+.+.+..+.+....|..+
T Consensus 247 ~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~ 294 (306)
T 2z66_A 247 PSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 294 (306)
T ss_dssp CTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGG
T ss_pred hccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhh
Confidence 4 89999999998876422 111222334455566677776666653
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.4e-29 Score=235.32 Aligned_cols=235 Identities=14% Similarity=0.141 Sum_probs=156.0
Q ss_pred CCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEc
Q 012103 210 LTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQL 289 (471)
Q Consensus 210 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l 289 (471)
.++++.|++++|.+. .+|..++++++|++|++++|.++ .+|..+..+++|++|++++|.+...+..+..+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 356667777777666 56666666666777777766666 5565566666666666665555532224444555555555
Q ss_pred cCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccc
Q 012103 290 FKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGE 369 (471)
Q Consensus 290 ~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~ 369 (471)
++|++.+.+|..+.. . ..+..+.++++|++|++++|.++ .+|..+..+++|+.|++++|.+++
T Consensus 158 ~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~- 220 (328)
T 4fcg_A 158 RACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA- 220 (328)
T ss_dssp EEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred CCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-
Confidence 555444444443322 0 00011233677777777777776 677777777777777777777773
Q ss_pred cchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcC
Q 012103 370 IPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKA 449 (471)
Q Consensus 370 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l 449 (471)
+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|+.|++++|++.+.+|+.+.++
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L 300 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence 55567777777777777777777777777777778888888877777777777777888888888877777888888888
Q ss_pred CCCCEEeccCCcCc
Q 012103 450 TSLVVIKLNNNQLT 463 (471)
Q Consensus 450 ~~L~~L~l~~n~~s 463 (471)
++|+.+++..+.+.
T Consensus 301 ~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 301 PANCIILVPPHLQA 314 (328)
T ss_dssp CTTCEEECCGGGSC
T ss_pred cCceEEeCCHHHHH
Confidence 88888877776665
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-31 Score=271.38 Aligned_cols=406 Identities=12% Similarity=0.065 Sum_probs=298.2
Q ss_pred CceeeceEeCCCCCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCC---cccccccc------------CCCCC
Q 012103 52 FCNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLY---GEISKDLN------------NCVKL 116 (471)
Q Consensus 52 ~c~~~gv~c~~~~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~------------~l~~L 116 (471)
|++|.++.+.. . +.+.+.+. +. ..+...+..+++|++|+++++... +.+|..++ .+++|
T Consensus 41 ck~W~~~~~~~-~---~~l~~~~~-~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L 114 (592)
T 3ogk_B 41 CRRWFKIDSET-R---EHVTMALC-YT-ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQL 114 (592)
T ss_dssp CHHHHHHHHHH-C---CEEEESCG-GG-SCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred hHHHHHhhhcc-c---cEEEEeec-cc-cChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCC
Confidence 44788875432 1 23333322 22 334445678999999999875431 22332222 78999
Q ss_pred CEEeCCCCcCCccCC-CCCC-CCC-CCEEEccCCCC-ccc-CCcccccCCCCCcEEEccCCCCCCCC---CCccccCCCC
Q 012103 117 QYLDLGNNVFSGSFP-EISS-LNE-LQHLYLNLSGF-SGV-FPWMSLGNMTNLVSLSVGDNPFDPTP---FPDQVVKLNK 188 (471)
Q Consensus 117 ~~L~l~~n~l~~~~~-~l~~-l~~-L~~L~l~~n~l-~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~---~~~~l~~l~~ 188 (471)
++|+|++|.+++..+ .+.. +++ |++|++++|.. +.. .+ ....++++|++|++++|.+.... ++.....+++
T Consensus 115 ~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~ 193 (592)
T 3ogk_B 115 KSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLL-SIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTS 193 (592)
T ss_dssp CEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHH-HHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCC
T ss_pred CeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHH-HHHhhCCCCCEEECccccccCcchhHHHHHHhcCCC
Confidence 999999998876544 4444 344 99999999862 211 11 23357899999999999874332 3345567899
Q ss_pred CCEEEcccccCc----ccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeecccccc---ccCCccccCCCCC
Q 012103 189 LNWLYLTNCSID----GQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLS---GKLPVGLRNLTNL 261 (471)
Q Consensus 189 L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~---~~~~~~l~~l~~L 261 (471)
|++|++++|.+. +.++..+..+++|+.|++++|.+.+ +|..+.++++|++|+++..... ...+..+..+++|
T Consensus 194 L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L 272 (592)
T 3ogk_B 194 LEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKL 272 (592)
T ss_dssp CCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTC
T ss_pred ccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccc
Confidence 999999999987 3455566789999999999999884 7788899999999999864332 2344567888999
Q ss_pred CEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccc-hhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccC-
Q 012103 262 ANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVP-AELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSE- 339 (471)
Q Consensus 262 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~- 339 (471)
+.++++++........+..+++|++|++++|.+++... ..+..+++|++|+++++...+.++.....+++|++|++++
T Consensus 273 ~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g 352 (592)
T 3ogk_B 273 CRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERG 352 (592)
T ss_dssp CEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECC
T ss_pred cccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecC
Confidence 99999986544344467778999999999999875544 4468899999999994433334445556789999999993
Q ss_pred ----------Cccccc-CchhhcCCCCCceeeccCCccccccchhhhc-CCCCcEEEcc----CCcCccc-----ccccc
Q 012103 340 ----------NLLTGP-IPPDMCKRGTMRDLLMLQNKFTGEIPATYAN-CLTLQRFRVS----NNSLKGT-----VPAGI 398 (471)
Q Consensus 340 ----------n~l~~~-~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~L~----~n~~~~~-----~~~~~ 398 (471)
+.+++. ++.....+++|+.|+++.+.+++..+..+.. +++|+.|+++ .|.+++. ++..+
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~ 432 (592)
T 3ogk_B 353 ADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL 432 (592)
T ss_dssp CCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHH
T ss_pred ccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHH
Confidence 556543 2233456899999999999999877777765 9999999996 6777753 44456
Q ss_pred cCCCCCCEeecccCc--cccccchhhhc-cCCCCeeeCCCCcCcc-cchhhhhcCCCCCEEeccCCcCccc
Q 012103 399 WGLPEVNIIDIALNQ--IEGPITKDIEN-AKALNLLFAEYNRLSG-ELPEEISKATSLVVIKLNNNQLTGK 465 (471)
Q Consensus 399 ~~~~~L~~L~ls~n~--~~~~~~~~~~~-l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~~sg~ 465 (471)
..+++|+.|++++|. +++..+..+.. +++|+.|++++|++++ .++..+..+++|+.|++++|+|++.
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 779999999998544 77666666554 8999999999999986 4566678899999999999998754
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-28 Score=226.83 Aligned_cols=268 Identities=16% Similarity=0.133 Sum_probs=138.9
Q ss_pred cEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeecc
Q 012103 165 VSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYN 244 (471)
Q Consensus 165 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~ 244 (471)
++++.+++.+. .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++++
T Consensus 14 ~~~~c~~~~l~--~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ--AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS--SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc--cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 44555555442 223222 24555555555555544444455555555555555555544444444455555555555
Q ss_pred cc-ccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCc
Q 012103 245 NQ-LSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALP 323 (471)
Q Consensus 245 n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~ 323 (471)
|. +....+.. +..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 90 n~~l~~~~~~~-----------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 90 NAQLRSVDPAT-----------------------FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp CTTCCCCCTTT-----------------------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCccccCHHH-----------------------hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence 43 33332333 4444555555555555554444455555555555555555554444
Q ss_pred hhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCC
Q 012103 324 QELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPE 403 (471)
Q Consensus 324 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~ 403 (471)
..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++
T Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcc
Confidence 44555555666666666555333334555566666666666666555666666666666666666666544455666666
Q ss_pred CCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhc--CCCCCEEeccCC
Q 012103 404 VNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISK--ATSLVVIKLNNN 460 (471)
Q Consensus 404 L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~--l~~L~~L~l~~n 460 (471)
|++|++++|++....+.. .-...++.+....+.+....|+.+.. +..++..++.+|
T Consensus 227 L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 227 LQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp CCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred cCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 666666666665432211 11122334445566666666666543 233444444444
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.9e-28 Score=223.38 Aligned_cols=224 Identities=19% Similarity=0.152 Sum_probs=175.1
Q ss_pred CEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcc
Q 012103 140 QHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELS 219 (471)
Q Consensus 140 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 219 (471)
+.++.+++.++..+. .-.++|++|++++|.+.. ..+..+..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 14 ~~~~c~~~~l~~ip~----~~~~~l~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV----GIPAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCSSCCT----TCCTTCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcccCCc----CCCCCceEEEeeCCcCCc-cCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 678888888876532 235799999999999943 334678999999999999999998888999999999999999
Q ss_pred cCc-CCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCccc
Q 012103 220 DNN-ISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFSGE 297 (471)
Q Consensus 220 ~n~-l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~ 297 (471)
+|. +.+..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+++.
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 997 776668889999999999999999997777788888888888888888876655 467777788888887777755
Q ss_pred cchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCcccc
Q 012103 298 VPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTG 368 (471)
Q Consensus 298 ~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~ 368 (471)
.+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++..
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 55566777777777777777776666666677777777777777765444556666666666666666653
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-27 Score=235.42 Aligned_cols=247 Identities=17% Similarity=0.195 Sum_probs=189.0
Q ss_pred CCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCC
Q 012103 188 KLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDAS 267 (471)
Q Consensus 188 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 267 (471)
..+.++.++..++ .+|..+. ++++.|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4567777777777 5666554 578889999998887778888888889999998888887777788888888888888
Q ss_pred CCcCccccc-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCc-hhhcCCCCCCEEeccCCccccc
Q 012103 268 TNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALP-QELGSWAEFDFIDVSENLLTGP 345 (471)
Q Consensus 268 ~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~ 345 (471)
+|.+.+..+ .+..+++|++|++++|.+....+..+..+++|++|++++|...+.++ ..+.++++|++|++++|.++ .
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-D 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-S
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-c
Confidence 888886666 57778888888888888886666677888888888888744333444 35777788888888888877 3
Q ss_pred CchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhcc
Q 012103 346 IPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENA 425 (471)
Q Consensus 346 ~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l 425 (471)
+| .+..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|++++..+..+..+
T Consensus 211 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 211 MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 44 46667777888888887777777777777777777777777776667777777777777777777776666667777
Q ss_pred CCCCeeeCCCCcCc
Q 012103 426 KALNLLFAEYNRLS 439 (471)
Q Consensus 426 ~~L~~L~l~~n~l~ 439 (471)
++|+.|++++|.+.
T Consensus 290 ~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 290 RYLVELHLHHNPWN 303 (452)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEccCCCcC
Confidence 77777777777664
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-27 Score=235.13 Aligned_cols=247 Identities=16% Similarity=0.170 Sum_probs=202.7
Q ss_pred CCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCC
Q 012103 188 KLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDAS 267 (471)
Q Consensus 188 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 267 (471)
..+.++.++..++ .+|..+. ++++.|++++|.+.+..+..+.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4667888888887 5676654 689999999999987777888999999999999999987777888899999999999
Q ss_pred CCcCccccc-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCc-hhhcCCCCCCEEeccCCccccc
Q 012103 268 TNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALP-QELGSWAEFDFIDVSENLLTGP 345 (471)
Q Consensus 268 ~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~ 345 (471)
+|.++...+ .+..+++|++|++++|.+....+..+..+++|++|++++|...+.++ ..+.++++|++|++++|.++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 999887666 68888999999999999887666788888999999998854443444 46778888999999998887 5
Q ss_pred CchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhcc
Q 012103 346 IPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENA 425 (471)
Q Consensus 346 ~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l 425 (471)
+| .+..+++|+.|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..+..+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 66 46777888888888888887778888888888888888888887777778888888888888888887777777788
Q ss_pred CCCCeeeCCCCcCc
Q 012103 426 KALNLLFAEYNRLS 439 (471)
Q Consensus 426 ~~L~~L~l~~n~l~ 439 (471)
++|+.|++++|.+.
T Consensus 279 ~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 279 HHLERIHLHHNPWN 292 (440)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEcCCCCcc
Confidence 88888888888765
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-29 Score=239.49 Aligned_cols=245 Identities=17% Similarity=0.197 Sum_probs=167.6
Q ss_pred CCCCcEEEcccCcCCCcCCccccCCCCCCeEeecccccc-ccCCcccc-------CCCCCCEEeCCCCcCccccc-cC--
Q 012103 210 LTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLS-GKLPVGLR-------NLTNLANFDASTNFLEGDLS-EV-- 278 (471)
Q Consensus 210 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~~l~-------~l~~L~~L~l~~n~~~~~~~-~~-- 278 (471)
.++|+.+++++|.+ .+|..+... +++|++++|.+. ..++..+. ++++|++|++++|.+++..+ .+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 34455555555555 344444332 555555555552 23343333 45666666666666665444 22
Q ss_pred CCCCCCCEEEccCCcCccccchhccCC-----CCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCccccc--Cchhh-
Q 012103 279 RFLTNLVTLQLFKNQFSGEVPAELGKF-----KKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGP--IPPDM- 350 (471)
Q Consensus 279 ~~~~~L~~L~l~~n~l~~~~~~~l~~~-----~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~--~p~~~- 350 (471)
..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 6667777777777777755 5555554 7778888888887766667777777888888888876654 23344
Q ss_pred -cCCCCCceeeccCCcccc--cc-chhhhcCCCCcEEEccCCcCccccc-ccccCCCCCCEeecccCccccccchhhhcc
Q 012103 351 -CKRGTMRDLLMLQNKFTG--EI-PATYANCLTLQRFRVSNNSLKGTVP-AGIWGLPEVNIIDIALNQIEGPITKDIENA 425 (471)
Q Consensus 351 -~~~~~L~~L~l~~n~~~~--~~-~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l 425 (471)
..+++|+.|++++|++++ .+ ...+..+++|++|++++|++++.+| ..+..+++|++|++++|+++ .+|..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence 667788888888888773 22 2344677888888888888887664 44566788999999999888 6666665
Q ss_pred CCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCcc
Q 012103 426 KALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTG 464 (471)
Q Consensus 426 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg 464 (471)
++|+.|++++|++++. |. +..+++|++|++++|++++
T Consensus 274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 7889999999999855 65 8888999999999999885
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-27 Score=233.04 Aligned_cols=248 Identities=20% Similarity=0.180 Sum_probs=220.4
Q ss_pred CCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEee
Q 012103 163 NLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLEL 242 (471)
Q Consensus 163 ~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 242 (471)
..+.++.++..+ ..+|..+. +++++|++++|.+.+..+..|.++++|+.|++++|.+.+..+..+.++++|++|++
T Consensus 44 ~~~~v~c~~~~l--~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNL--REVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCC--SSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCc--CcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 467888888887 45666554 68999999999999888889999999999999999999877788999999999999
Q ss_pred ccccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCcccc-chhccCCCCCCEEEcccCcCcc
Q 012103 243 YNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEV-PAELGKFKKLVNLSLYTNKLTG 320 (471)
Q Consensus 243 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~L~~n~l~~ 320 (471)
++|.+++..+..+..+++|++|++++|.+....+ .+..+++|++|++++|+..+.+ +..+..+++|++|++++|.++
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~- 198 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR- 198 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence 9999997666789999999999999999997766 7889999999999995544344 457889999999999999998
Q ss_pred cCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccC
Q 012103 321 ALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWG 400 (471)
Q Consensus 321 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~ 400 (471)
.+| .+..+++|++|++++|.+++..|..+..+++|+.|++++|++.+..+..|..+++|+.|+|++|++++..+..+..
T Consensus 199 ~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 199 EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 556 4788899999999999999888899999999999999999999988999999999999999999999777777889
Q ss_pred CCCCCEeecccCcccc
Q 012103 401 LPEVNIIDIALNQIEG 416 (471)
Q Consensus 401 ~~~L~~L~ls~n~~~~ 416 (471)
+++|+.|++++|++.-
T Consensus 278 l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 278 LHHLERIHLHHNPWNC 293 (440)
T ss_dssp CTTCCEEECCSSCEEC
T ss_pred ccCCCEEEcCCCCccC
Confidence 9999999999998864
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-29 Score=239.55 Aligned_cols=266 Identities=15% Similarity=0.143 Sum_probs=173.4
Q ss_pred CcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeec
Q 012103 164 LVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELY 243 (471)
Q Consensus 164 L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 243 (471)
++..+++.+.+ .......+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSL-KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTH-HHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccch-hhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 44455555544 11112333455678888888888776666677777888888888887765443 6777778888887
Q ss_pred cccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCc
Q 012103 244 NNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALP 323 (471)
Q Consensus 244 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~ 323 (471)
+|.+++. ...++|++|++++|.+.+..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 89 ~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 89 NNYVQEL-----LVGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SSEEEEE-----EECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred CCccccc-----cCCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 7777632 2346777777777777655432 25667777777777776656666667777777777777776555
Q ss_pred hhh-cCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCC
Q 012103 324 QEL-GSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLP 402 (471)
Q Consensus 324 ~~~-~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~ 402 (471)
..+ ..+++|++|++++|.+++. |. ...+++|+.|++++|++++ ++..+..+++|+.|++++|+++ .+|..+..++
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~ 237 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred HHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence 544 3567777777777777633 32 2236677777777777774 3344666777777777777777 4566666777
Q ss_pred CCCEeecccCccc-cccchhhhccCCCCeeeCCC-CcCcccch
Q 012103 403 EVNIIDIALNQIE-GPITKDIENAKALNLLFAEY-NRLSGELP 443 (471)
Q Consensus 403 ~L~~L~ls~n~~~-~~~~~~~~~l~~L~~L~l~~-n~l~~~~p 443 (471)
+|+.|++++|++. +.+|..+..++.|+.+++.+ +.+.|..|
T Consensus 238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 7777777777776 56666666777777777763 34444443
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-27 Score=233.57 Aligned_cols=248 Identities=16% Similarity=0.162 Sum_probs=220.1
Q ss_pred CCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEee
Q 012103 163 NLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLEL 242 (471)
Q Consensus 163 ~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 242 (471)
....++.++..+ ..+|..+. +++++|++++|.+++..+..|..+++|+.|++++|.+.+..+..+.++++|++|++
T Consensus 55 ~~~~v~c~~~~l--~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGL--SEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCC--SSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCc--CccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 457888888877 34565543 68999999999999888899999999999999999999888889999999999999
Q ss_pred ccccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCcccc-chhccCCCCCCEEEcccCcCcc
Q 012103 243 YNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEV-PAELGKFKKLVNLSLYTNKLTG 320 (471)
Q Consensus 243 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~L~~n~l~~ 320 (471)
++|.+++..+..+..+++|++|++++|.+....+ .+..+++|++|++++|...+.+ +..+..+++|++|++++|.+++
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 9999997777779999999999999999997666 7889999999999995444444 4568899999999999999984
Q ss_pred cCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccC
Q 012103 321 ALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWG 400 (471)
Q Consensus 321 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~ 400 (471)
+| .+..+++|++|++++|.+++..|..+..+++|+.|++++|++.+..+..|..+++|+.|++++|++++..+..+..
T Consensus 211 -~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 211 -MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp -CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred -cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 45 4788899999999999999888999999999999999999999988999999999999999999999777777889
Q ss_pred CCCCCEeecccCcccc
Q 012103 401 LPEVNIIDIALNQIEG 416 (471)
Q Consensus 401 ~~~L~~L~ls~n~~~~ 416 (471)
+++|+.|++++|++..
T Consensus 289 l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 289 LRYLVELHLHHNPWNC 304 (452)
T ss_dssp CTTCCEEECCSSCEEC
T ss_pred ccCCCEEEccCCCcCC
Confidence 9999999999998764
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-31 Score=269.96 Aligned_cols=394 Identities=14% Similarity=0.104 Sum_probs=239.1
Q ss_pred CCEEEEEcCCCCCccccC--------------cccccCCCCCcEEeCCCCCCCcccccccc-CCCCCCEEeCCCC-cCCc
Q 012103 65 SFVQEIELSNRNLKGTLP--------------FDSICQLQALHKLSLGFNSLYGEISKDLN-NCVKLQYLDLGNN-VFSG 128 (471)
Q Consensus 65 ~~v~~L~L~~~~l~g~l~--------------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~n-~l~~ 128 (471)
.++++++++++.....+. ......+++|++|++++|.+++..+..+. .+++|++|++++| .++.
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 457777777765322211 01123577888888888887766665554 5788888888887 4443
Q ss_pred c-CC-CCCCCCCCCEEEccCCCCcccCCccc----ccCCCCCcEEEccCCC--CCCCCCCccccCCCCCCEEEcccccCc
Q 012103 129 S-FP-EISSLNELQHLYLNLSGFSGVFPWMS----LGNMTNLVSLSVGDNP--FDPTPFPDQVVKLNKLNWLYLTNCSID 200 (471)
Q Consensus 129 ~-~~-~l~~l~~L~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~l~~n~--~~~~~~~~~l~~l~~L~~L~l~~n~l~ 200 (471)
. ++ ...++++|++|++++|.+++..+ .. ...+++|++|++++|. +....+......+++|++|++++|...
T Consensus 146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 224 (594)
T 2p1m_B 146 DGLAAIAATCRNLKELDLRESDVDDVSG-HWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL 224 (594)
T ss_dssp HHHHHHHHHCTTCCEEECTTCEEECCCG-GGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred HHHHHHHHhCCCCCEEeCcCCccCCcch-HHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence 2 22 33467888888888887665432 22 2366788888888775 211112222345688888888887433
Q ss_pred ccCCccccCCCCCcEEEcccCc-------CCCcCCccccCCCCCCeE-eeccccccccCCccccCCCCCCEEeCCCCcCc
Q 012103 201 GQIPVEIGNLTELINLELSDNN-------ISGEIPSEIGNLVKLWRL-ELYNNQLSGKLPVGLRNLTNLANFDASTNFLE 272 (471)
Q Consensus 201 ~~~~~~l~~l~~L~~L~L~~n~-------l~~~~p~~~~~l~~L~~L-~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 272 (471)
..++..+..+++|+.|+++.+. +. .++..+.++++|+.+ .+..... +.++..+..+++|++|++++|.+.
T Consensus 225 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~ 302 (594)
T 2p1m_B 225 EKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQ 302 (594)
T ss_dssp HHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCC
T ss_pred HHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCC
Confidence 3466667777888888865543 22 233356667777776 3332221 234444456777888888877755
Q ss_pred cccc--cCCCCCCCCEEEccCCcCccc-cchhccCCCCCCEEEccc---------CcCcccCchhh-cCCCCCCEEeccC
Q 012103 273 GDLS--EVRFLTNLVTLQLFKNQFSGE-VPAELGKFKKLVNLSLYT---------NKLTGALPQEL-GSWAEFDFIDVSE 339 (471)
Q Consensus 273 ~~~~--~~~~~~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L~L~~---------n~l~~~~~~~~-~~~~~L~~L~L~~ 339 (471)
+... .+..+++|++|++++| +... ++.....+++|++|++.+ +.+++.....+ ..+++|++|.+..
T Consensus 303 ~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~ 381 (594)
T 2p1m_B 303 SYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC 381 (594)
T ss_dssp HHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred HHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc
Confidence 4322 3556777888888777 3322 222333467778877733 34443322222 2367777777777
Q ss_pred CcccccCchhhc-CCCCCceeecc--C----Ccccc-----ccchhhhcCCCCcEEEccCCcCcccccccccC-CCCCCE
Q 012103 340 NLLTGPIPPDMC-KRGTMRDLLML--Q----NKFTG-----EIPATYANCLTLQRFRVSNNSLKGTVPAGIWG-LPEVNI 406 (471)
Q Consensus 340 n~l~~~~p~~~~-~~~~L~~L~l~--~----n~~~~-----~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~-~~~L~~ 406 (471)
+.+++..+..+. .+++|+.|+++ + +.+++ .++..+..+++|+.|++++ .+++..+..+.. +++|+.
T Consensus 382 ~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~ 460 (594)
T 2p1m_B 382 RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEM 460 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCE
T ss_pred CCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccE
Confidence 777655444443 46777888777 3 34441 1223356677788888766 555544444443 677788
Q ss_pred eecccCccccccchhh-hccCCCCeeeCCCCcCcccchh-hhhcCCCCCEEeccCCcCc
Q 012103 407 IDIALNQIEGPITKDI-ENAKALNLLFAEYNRLSGELPE-EISKATSLVVIKLNNNQLT 463 (471)
Q Consensus 407 L~ls~n~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~L~~L~l~~n~~s 463 (471)
|++++|.+++..+..+ .++++|+.|++++|.+++..+. .+..+++|+.|++++|+++
T Consensus 461 L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 461 LSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp EEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred eeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 8888877766555444 5677788888888877654443 3344677888888887775
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=236.31 Aligned_cols=268 Identities=24% Similarity=0.311 Sum_probs=219.2
Q ss_pred CCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEE
Q 012103 138 ELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLE 217 (471)
Q Consensus 138 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 217 (471)
+++.|++++|.++.. | ..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|+
T Consensus 41 ~l~~L~ls~n~L~~l-p-~~l~--~~L~~L~L~~N~l~--~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~ 107 (622)
T 3g06_A 41 GNAVLNVGESGLTTL-P-DCLP--AHITTLVIPDNNLT--SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELS 107 (622)
T ss_dssp CCCEEECCSSCCSCC-C-SCCC--TTCSEEEECSCCCS--CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEE
T ss_pred CCcEEEecCCCcCcc-C-hhhC--CCCcEEEecCCCCC--CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEE
Confidence 589999999999844 4 3343 89999999999984 4555 5789999999999998 4555 678999999
Q ss_pred cccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccc
Q 012103 218 LSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGE 297 (471)
Q Consensus 218 L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 297 (471)
+++|.+++ +|. .+++|++|++++|.+++ +|.. +++|++|++++|.+++... .+++|+.|++++|.+++
T Consensus 108 Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~- 175 (622)
T 3g06_A 108 IFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTS- 175 (622)
T ss_dssp ECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-
T ss_pred CcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCC-
Confidence 99999984 555 56889999999999984 5543 4899999999999886433 35789999999999984
Q ss_pred cchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcC
Q 012103 298 VPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANC 377 (471)
Q Consensus 298 ~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 377 (471)
+| ..+++|+.|++++|.+++ +|.. .++|+.|++++|.++ .+|.. +++|+.|++++|.+++ +| ..+
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l 240 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLP 240 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCC
T ss_pred Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCC
Confidence 55 456889999999999984 5542 478999999999998 56643 4789999999999985 55 456
Q ss_pred CCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCC
Q 012103 378 LTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKAT 450 (471)
Q Consensus 378 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 450 (471)
++|+.|++++|.++ .+|. .+++|+.|++++|+++ .+|..+.++++|+.|++++|++++..|..+..++
T Consensus 241 ~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 241 SELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 88999999999998 5666 5688999999999998 6788899999999999999999999888877653
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=234.18 Aligned_cols=270 Identities=21% Similarity=0.268 Sum_probs=227.0
Q ss_pred CCCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEE
Q 012103 114 VKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLY 193 (471)
Q Consensus 114 ~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 193 (471)
.+++.|++++|.++..+..+. ++|++|++++|.++.. | . .+++|++|++++|.++ .+|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~l-p-~---~l~~L~~L~Ls~N~l~--~lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSL-P-A---LPPELRTLEVSGNQLT--SLPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCC-C-C---CCTTCCEEEECSCCCS--CCCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCC-C-C---cCCCCCEEEcCCCcCC--cCCC---CCCCCCEEE
Confidence 358999999999996555555 8999999999999854 3 2 5799999999999984 4555 679999999
Q ss_pred cccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCcc
Q 012103 194 LTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEG 273 (471)
Q Consensus 194 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 273 (471)
+++|.+++ +|. .+++|+.|++++|.+++ +|.. +++|++|++++|.+++ +|. ..++|+.|++++|.+++
T Consensus 108 Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 108 IFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp ECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred CcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC
Confidence 99999985 444 56899999999999984 6654 4899999999999984 443 35789999999999986
Q ss_pred ccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCC
Q 012103 274 DLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKR 353 (471)
Q Consensus 274 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~ 353 (471)
.. ..+++|+.|++++|.+++ +|.. .++|+.|++++|.++ .+|.. +++|+.|++++|.++ .+| ..+
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~-~lp---~~l 240 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLP---VLP 240 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCC---CCC
T ss_pred Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccC-cCC---CCC
Confidence 44 557999999999999984 4543 478999999999998 45542 478999999999998 466 456
Q ss_pred CCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCC
Q 012103 354 GTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKA 427 (471)
Q Consensus 354 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~ 427 (471)
++|+.|++++|+++ .+|. .+++|+.|++++|+++ .+|..+..+++|+.|++++|++.+..|..+..++.
T Consensus 241 ~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 241 SELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS 309 (622)
T ss_dssp TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred CcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhccc
Confidence 89999999999999 4555 6789999999999999 88999999999999999999999999988877653
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-29 Score=235.20 Aligned_cols=254 Identities=17% Similarity=0.193 Sum_probs=149.8
Q ss_pred ccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCc-ccCCcccc-------CCCCCcEEEcccCcCCCcCCc
Q 012103 158 LGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSID-GQIPVEIG-------NLTELINLELSDNNISGEIPS 229 (471)
Q Consensus 158 ~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~-------~l~~L~~L~L~~n~l~~~~p~ 229 (471)
++..++|+.|++++|.+ .+|..+... |++|++++|.+. ..+|..+. .+++|++|++++|.+++.+|.
T Consensus 39 ~~~~~~L~~l~l~~n~l---~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE---ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT---CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc---ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 34455666666666665 345444332 555666666552 33444433 455666666666666555555
Q ss_pred cc--cCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCC
Q 012103 230 EI--GNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKK 307 (471)
Q Consensus 230 ~~--~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 307 (471)
.+ ..+++|++|++++|.+++. |..+..+. ...+++|++|++++|.+++..+..+..+++
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~------------------~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQ------------------QWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHH------------------TTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHH------------------HhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 44 5555555555555555543 44443330 001255666666666665555556666666
Q ss_pred CCEEEcccCcCccc--Cchhh--cCCCCCCEEeccCCcccc--cCch-hhcCCCCCceeeccCCccccccc-hhhhcCCC
Q 012103 308 LVNLSLYTNKLTGA--LPQEL--GSWAEFDFIDVSENLLTG--PIPP-DMCKRGTMRDLLMLQNKFTGEIP-ATYANCLT 379 (471)
Q Consensus 308 L~~L~L~~n~l~~~--~~~~~--~~~~~L~~L~L~~n~l~~--~~p~-~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~ 379 (471)
|++|++++|++.+. .+..+ ..+++|++|++++|.+++ .++. .+..+++|+.|++++|++++..| ..+..+++
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence 66666666665543 22233 556666666666666652 2222 22455677777777777766553 34455677
Q ss_pred CcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcc
Q 012103 380 LQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSG 440 (471)
Q Consensus 380 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 440 (471)
|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus 255 L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 255 LNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 788888888777 6666665 6788888888888765 44 7777888888888887764
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-28 Score=233.36 Aligned_cols=237 Identities=19% Similarity=0.168 Sum_probs=113.5
Q ss_pred cCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCC
Q 012103 159 GNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLW 238 (471)
Q Consensus 159 ~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 238 (471)
..+++|++|++++|.+. ...|..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ ..++|+
T Consensus 31 ~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~ 102 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIE 102 (317)
T ss_dssp TTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTTCC
T ss_pred ccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCCcC
Confidence 34445555555555552 2223445555555555555555543322 4455555555555555442 11 224555
Q ss_pred eEeeccccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCccccchhc-cCCCCCCEEEcccC
Q 012103 239 RLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEVPAEL-GKFKKLVNLSLYTN 316 (471)
Q Consensus 239 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l-~~~~~L~~L~L~~n 316 (471)
+|++++|.+++..+. .+++|++|++++|.+.+..+ .+..+++|++|++++|.+++..+..+ ..+++|++|++++|
T Consensus 103 ~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp EEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 555555555433222 23445555555555554433 44445555555555555554433333 23455555555555
Q ss_pred cCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCc-cccc
Q 012103 317 KLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLK-GTVP 395 (471)
Q Consensus 317 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~-~~~~ 395 (471)
.+++. +. ...+++|++|++++|.++ .+|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|.+. +.+|
T Consensus 180 ~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~ 255 (317)
T 3o53_A 180 FIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255 (317)
T ss_dssp CCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHH
T ss_pred cCccc-cc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHH
Confidence 55432 21 123445555555555554 23333444555555555555555 34444555555555555555555 4444
Q ss_pred ccccCCCCCCEeecc
Q 012103 396 AGIWGLPEVNIIDIA 410 (471)
Q Consensus 396 ~~~~~~~~L~~L~ls 410 (471)
..+..+++|+.++++
T Consensus 256 ~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 256 DFFSKNQRVQTVAKQ 270 (317)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHhccccceEEECC
Confidence 445555555555554
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-26 Score=209.38 Aligned_cols=215 Identities=23% Similarity=0.274 Sum_probs=144.8
Q ss_pred CCCceeeceEeCCCCCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCcc
Q 012103 50 NHFCNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGS 129 (471)
Q Consensus 50 ~~~c~~~gv~c~~~~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 129 (471)
.++|.|.|+.|.- ...++.+++++++++ .+|.. + .+++++|++++|.+.+..+..|.++++|++|++++|.+++.
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~-~ip~~-~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i 76 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSKKLT-AIPSN-I--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL 76 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTSCCS-SCCSC-C--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCCCCC-ccCCC-C--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee
Confidence 5789999998875 345678999999998 67754 2 26789999999998877677888899999999999988876
Q ss_pred CC-CCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCcccc
Q 012103 130 FP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIG 208 (471)
Q Consensus 130 ~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 208 (471)
++ .+.++++|++|++++|.+.+..+ ..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+.+..+..+.
T Consensus 77 ~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 154 (270)
T 2o6q_A 77 PAGIFKELKNLETLWVTDNKLQALPI-GVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154 (270)
T ss_dssp CTTTTSSCTTCCEEECCSSCCCCCCT-TTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ChhhhcCCCCCCEEECCCCcCCcCCH-hHcccccCCCEEECCCCccCe-eCHHHhCcCcCCCEEECCCCcCCccCHhHcc
Confidence 66 45778888888888888776655 566777777777777777632 2234455666666666666666644444455
Q ss_pred CCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcC
Q 012103 209 NLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFL 271 (471)
Q Consensus 209 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 271 (471)
.+++|+.|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 666666666666666544444455555555555555555533333344444444444444443
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-27 Score=238.54 Aligned_cols=234 Identities=15% Similarity=0.152 Sum_probs=145.8
Q ss_pred CCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCC
Q 012103 188 KLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDAS 267 (471)
Q Consensus 188 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 267 (471)
+|++|++++|.+.+..|..|..+++|+.|++++|.+++..| +..+++|++|++++|.+++.. ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 67777777777776666677777777777777777765444 666777777777777766322 23667777777
Q ss_pred CCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhc-CCCCCCEEeccCCcccccC
Q 012103 268 TNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELG-SWAEFDFIDVSENLLTGPI 346 (471)
Q Consensus 268 ~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~L~~n~l~~~~ 346 (471)
+|.+.+..+ ..+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.+++.
T Consensus 108 ~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~- 184 (487)
T 3oja_A 108 NNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV- 184 (487)
T ss_dssp SSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred CCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence 776665443 2345666666666666666566666666666666666666665555554 566666666666666533
Q ss_pred chhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccc-cccchhhhcc
Q 012103 347 PPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIE-GPITKDIENA 425 (471)
Q Consensus 347 p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~-~~~~~~~~~l 425 (471)
|. ...+++|+.|++++|.+++. |..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++. +.+|..+..+
T Consensus 185 ~~-~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l 261 (487)
T 3oja_A 185 KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (487)
T ss_dssp EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred cc-cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhC
Confidence 22 22356666666666666643 333556666666666666666 35555666666666666666665 4455555555
Q ss_pred CCCCeeeCC
Q 012103 426 KALNLLFAE 434 (471)
Q Consensus 426 ~~L~~L~l~ 434 (471)
+.|+.++++
T Consensus 262 ~~L~~l~~~ 270 (487)
T 3oja_A 262 QRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHHH
T ss_pred CCCcEEecc
Confidence 555555553
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-29 Score=257.90 Aligned_cols=392 Identities=14% Similarity=0.083 Sum_probs=282.9
Q ss_pred CCEEEEEcCCCCCccccCccccc-CCCCCcEEeCCCC-CCCcc-ccccccCCCCCCEEeCCCCcCCccCC-----CCCCC
Q 012103 65 SFVQEIELSNRNLKGTLPFDSIC-QLQALHKLSLGFN-SLYGE-ISKDLNNCVKLQYLDLGNNVFSGSFP-----EISSL 136 (471)
Q Consensus 65 ~~v~~L~L~~~~l~g~l~~~~~~-~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~-----~l~~l 136 (471)
..+++|+|+++.+.+..+.. +. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+ ....+
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~-l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLEL-IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHH-HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCeEEeeCcEEcHHHHHH-HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 46899999999887655444 43 6899999999999 45432 44555689999999999999776432 23478
Q ss_pred CCCCEEEccCCC--CcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEccccc-------CcccCCccc
Q 012103 137 NELQHLYLNLSG--FSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCS-------IDGQIPVEI 207 (471)
Q Consensus 137 ~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~-------l~~~~~~~l 207 (471)
++|++|++++|. +........+.++++|++|++++|.. ...++..+..+++|++|+++.+. +. .++..+
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l 261 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP-LEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVAL 261 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC-HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHH
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc-HHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHH
Confidence 899999999987 22111102235579999999999843 22367778889999999976553 33 244577
Q ss_pred cCCCCCcEE-EcccCcCCCcCCccccCCCCCCeEeeccccccccC-CccccCCCCCCEEeCCCCcCcc-ccc-cCCCCCC
Q 012103 208 GNLTELINL-ELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKL-PVGLRNLTNLANFDASTNFLEG-DLS-EVRFLTN 283 (471)
Q Consensus 208 ~~l~~L~~L-~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~-~~~-~~~~~~~ 283 (471)
.++++|+.+ .+.+... +.++..+..+++|++|++++|.+++.. ...+..+++|++|++++| +.. .+. ....+++
T Consensus 262 ~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp HTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred hcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 899999999 4443322 245555667899999999999876433 233568899999999988 332 222 2334789
Q ss_pred CCEEEcc---------CCcCccccchhcc-CCCCCCEEEcccCcCcccCchhhc-CCCCCCEEecc--C----Ccccc--
Q 012103 284 LVTLQLF---------KNQFSGEVPAELG-KFKKLVNLSLYTNKLTGALPQELG-SWAEFDFIDVS--E----NLLTG-- 344 (471)
Q Consensus 284 L~~L~l~---------~n~l~~~~~~~l~-~~~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~L~--~----n~l~~-- 344 (471)
|++|+++ .+.+++.....+. .+++|++|.+..+.+++..+..+. .+++|+.|+++ + +.+++
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence 9999984 3456544333333 478999999999999876655554 58999999999 3 45541
Q ss_pred ---cCchhhcCCCCCceeeccCCccccccchhhhc-CCCCcEEEccCCcCcccccccc-cCCCCCCEeecccCccccccc
Q 012103 345 ---PIPPDMCKRGTMRDLLMLQNKFTGEIPATYAN-CLTLQRFRVSNNSLKGTVPAGI-WGLPEVNIIDIALNQIEGPIT 419 (471)
Q Consensus 345 ---~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~-~~~~~L~~L~ls~n~~~~~~~ 419 (471)
.++..+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|++++..+
T Consensus 420 ~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~ 498 (594)
T 2p1m_B 420 LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL 498 (594)
T ss_dssp THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH
T ss_pred hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH
Confidence 2223366788999999987 677666666655 8999999999999986655444 678999999999999976544
Q ss_pred h-hhhccCCCCeeeCCCCcCcccchhhh-hcCCCCCEEeccCCcC
Q 012103 420 K-DIENAKALNLLFAEYNRLSGELPEEI-SKATSLVVIKLNNNQL 462 (471)
Q Consensus 420 ~-~~~~l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~l~~n~~ 462 (471)
. ....+++|+.|++++|+++......+ ..++.|+...+..+.-
T Consensus 499 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 499 LANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp HHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred HHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence 4 44568999999999999976555555 5678887766666543
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=231.02 Aligned_cols=236 Identities=20% Similarity=0.194 Sum_probs=186.0
Q ss_pred CCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEc
Q 012103 210 LTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQL 289 (471)
Q Consensus 210 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l 289 (471)
+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ .++|++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 3478899999998887777788888889999999888886554 7888888888888888875443 278888888
Q ss_pred cCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhc-CCCCCceeeccCCcccc
Q 012103 290 FKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMC-KRGTMRDLLMLQNKFTG 368 (471)
Q Consensus 290 ~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~~~~L~~L~l~~n~~~~ 368 (471)
++|.+++..+. .+++|++|++++|.+++..|..+..+++|+.|++++|.+++.+|..+. .+++|+.|++++|.+++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 88888865543 357788888888888877777778888888888888888877777765 67888888888888886
Q ss_pred ccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCc-ccchhhhh
Q 012103 369 EIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLS-GELPEEIS 447 (471)
Q Consensus 369 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~p~~l~ 447 (471)
..+ ...+++|+.|++++|.+++ +|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|..+.
T Consensus 184 ~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 184 VKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred ccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 532 3357888888888888885 44457788888888888888885 6667778888888888888887 67777788
Q ss_pred cCCCCCEEecc
Q 012103 448 KATSLVVIKLN 458 (471)
Q Consensus 448 ~l~~L~~L~l~ 458 (471)
.++.|+.++++
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 88777777775
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-25 Score=204.54 Aligned_cols=225 Identities=16% Similarity=0.162 Sum_probs=163.8
Q ss_pred EEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCc
Q 012103 215 NLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQ 293 (471)
Q Consensus 215 ~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~ 293 (471)
.++..+..+. .+|..+. +++++|++++|.+++..+..+.++++|++|++++|.+.+..+ .+..+++|++|++++|.
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 3455555555 4665443 468888888888886666677888888888888888876665 67778888888888888
Q ss_pred CccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccc-cCchhhcCCCCCceeeccCCccccccch
Q 012103 294 FSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTG-PIPPDMCKRGTMRDLLMLQNKFTGEIPA 372 (471)
Q Consensus 294 l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~p~~~~~~~~L~~L~l~~n~~~~~~~~ 372 (471)
+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .+|..+..+++|+.|++++|++++..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 887766777888888888888888876555567777888888888888765 3577777788888888888887766666
Q ss_pred hhhcCCCCc----EEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccch
Q 012103 373 TYANCLTLQ----RFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELP 443 (471)
Q Consensus 373 ~~~~~~~L~----~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 443 (471)
.+..+++|+ +|++++|.+++..+. .....+|+.|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTT-SSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred HhhhhhhccccceeeecCCCcccccCcc-ccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 666666665 777888887744333 3344477788888887776665666777777777777777775543
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-25 Score=205.73 Aligned_cols=227 Identities=18% Similarity=0.209 Sum_probs=158.3
Q ss_pred CcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCC
Q 012103 213 LINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKN 292 (471)
Q Consensus 213 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n 292 (471)
+..+.+..+.+.+. .....+++|++|++++|.+.. + ..+..+++|++|++++|.+.+ ++.+..+++|++|++++|
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTS
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCC
Confidence 33444555544432 234567778888888887763 2 246777888888888887765 346677777888888888
Q ss_pred cCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccch
Q 012103 293 QFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPA 372 (471)
Q Consensus 293 ~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~ 372 (471)
.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 175 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence 77766666677777788888888877766555667777777777777777755555566777777777777777766666
Q ss_pred hhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCC
Q 012103 373 TYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATS 451 (471)
Q Consensus 373 ~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 451 (471)
.+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+. +++++.+++..|+++|.+|..++.++.
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 667777777777777777766666667777777777777776643 446677777777777777777766543
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=199.99 Aligned_cols=223 Identities=17% Similarity=0.157 Sum_probs=167.7
Q ss_pred EEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcC
Q 012103 192 LYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFL 271 (471)
Q Consensus 192 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 271 (471)
.+..+..+. .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 344444444 4555443 4688888888888866666788888888888888888866666788888888888888888
Q ss_pred ccccc-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCccc-CchhhcCCCCCCEEeccCCcccccCchh
Q 012103 272 EGDLS-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGA-LPQELGSWAEFDFIDVSENLLTGPIPPD 349 (471)
Q Consensus 272 ~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~p~~ 349 (471)
.+..+ .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 77665 677888888888888888866665677888888888888888753 5777888888888888888887665566
Q ss_pred hcCCCCCc----eeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCcccccc
Q 012103 350 MCKRGTMR----DLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPI 418 (471)
Q Consensus 350 ~~~~~~L~----~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~ 418 (471)
+..+++++ .|++++|.+.+..+..+. ..+|+.|++++|++++..+..+..+++|+.|++++|++.+..
T Consensus 169 ~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp GHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred hhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 65555555 788888888855554443 347888888888888655556677888888888888887644
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=194.37 Aligned_cols=201 Identities=18% Similarity=0.184 Sum_probs=124.9
Q ss_pred CCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcc
Q 012103 236 KLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLY 314 (471)
Q Consensus 236 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~ 314 (471)
..++++++++.++ .+|..+. +++++|++++|.+.+..+ .+..+++|++|++++|.++...+..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4566777777766 3454332 466777777776665554 56666677777777776664444445666667777777
Q ss_pred cCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccc
Q 012103 315 TNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTV 394 (471)
Q Consensus 315 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~ 394 (471)
+|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 66666544445566666666666666666544455566666666666666666544445666666666666666666444
Q ss_pred cccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCc
Q 012103 395 PAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 395 ~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 439 (471)
+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 445566666666666666666555555566666666666666654
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-25 Score=219.11 Aligned_cols=248 Identities=19% Similarity=0.227 Sum_probs=134.0
Q ss_pred CCccccCCCCCcEEEcccCcCCCcCC----ccccCCCCCCeEeecccc---ccccCCccccCCCCCCEEeCCCCcCcccc
Q 012103 203 IPVEIGNLTELINLELSDNNISGEIP----SEIGNLVKLWRLELYNNQ---LSGKLPVGLRNLTNLANFDASTNFLEGDL 275 (471)
Q Consensus 203 ~~~~l~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~l~~n~---l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 275 (471)
++..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|. +.+.+|..+.. ..
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~----------------l~ 87 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL----------------LL 87 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHH----------------HH
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHH----------------HH
Confidence 44555556666666666666654322 224455566666665542 22233322200 00
Q ss_pred ccCCCCCCCCEEEccCCcCcc----ccchhccCCCCCCEEEcccCcCcccCchh----hcCC---------CCCCEEecc
Q 012103 276 SEVRFLTNLVTLQLFKNQFSG----EVPAELGKFKKLVNLSLYTNKLTGALPQE----LGSW---------AEFDFIDVS 338 (471)
Q Consensus 276 ~~~~~~~~L~~L~l~~n~l~~----~~~~~l~~~~~L~~L~L~~n~l~~~~~~~----~~~~---------~~L~~L~L~ 338 (471)
..+..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+.. +..+ ++|++|+++
T Consensus 88 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC
Confidence 012344555555555555554 24445555556666666666654322222 2222 566666666
Q ss_pred CCccc-ccCc---hhhcCCCCCceeeccCCcccc-----ccchhhhcCCCCcEEEccCCcCc----ccccccccCCCCCC
Q 012103 339 ENLLT-GPIP---PDMCKRGTMRDLLMLQNKFTG-----EIPATYANCLTLQRFRVSNNSLK----GTVPAGIWGLPEVN 405 (471)
Q Consensus 339 ~n~l~-~~~p---~~~~~~~~L~~L~l~~n~~~~-----~~~~~~~~~~~L~~L~L~~n~~~----~~~~~~~~~~~~L~ 405 (471)
+|.++ +.+| ..+..+++|+.|++++|+++. ..+..+..+++|+.|++++|.++ +.+|..+..+++|+
T Consensus 168 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~ 247 (386)
T 2ca6_A 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247 (386)
T ss_dssp SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred CCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcC
Confidence 66665 2333 244455666666666666652 22225556666666666666664 34555666666666
Q ss_pred EeecccCccccc----cchhhhc--cCCCCeeeCCCCcCcc----cchhhh-hcCCCCCEEeccCCcCcccC
Q 012103 406 IIDIALNQIEGP----ITKDIEN--AKALNLLFAEYNRLSG----ELPEEI-SKATSLVVIKLNNNQLTGKI 466 (471)
Q Consensus 406 ~L~ls~n~~~~~----~~~~~~~--l~~L~~L~l~~n~l~~----~~p~~l-~~l~~L~~L~l~~n~~sg~i 466 (471)
.|++++|++++. ++..+.. +++|+.|++++|++++ .+|..+ .++++|+.|++++|++++..
T Consensus 248 ~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred EEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 666666666654 3444432 6666777777776665 366665 44666777777777666544
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8.8e-24 Score=196.65 Aligned_cols=201 Identities=18% Similarity=0.174 Sum_probs=104.7
Q ss_pred CCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEe
Q 012103 257 NLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFID 336 (471)
Q Consensus 257 ~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 336 (471)
+++++++++++++.++..++.+ .++++.|++++|.+++..+..+..+++|++|++++|.+++..+ . ..+++|++|+
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~ 83 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGTLD 83 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCEEE
T ss_pred ccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCEEE
Confidence 3444444444444444322222 1445555555555554444455555555555555555543221 1 4455555555
Q ss_pred ccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCcccc
Q 012103 337 VSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEG 416 (471)
Q Consensus 337 L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~ 416 (471)
+++|.++ .+|..+..+++|+.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++++
T Consensus 84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 5555554 455555555555555555555554444555555555555555555554444444555555555555555554
Q ss_pred ccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCc
Q 012103 417 PITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463 (471)
Q Consensus 417 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~s 463 (471)
..+..+..+++|+.|++++|+++ .+|..+...++|+.|++++|++.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 44444455555555555555555 45555555555555666555554
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.5e-25 Score=209.88 Aligned_cols=232 Identities=16% Similarity=0.144 Sum_probs=113.8
Q ss_pred CCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccc-cc-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEE
Q 012103 235 VKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGD-LS-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLS 312 (471)
Q Consensus 235 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ 312 (471)
+.++.+++++|.+.+..+. +..+++|++|++++|.+.+. .+ .+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 3444444444444433222 22344444444444444332 22 344445555555555555544455555555555555
Q ss_pred cccC-cCccc-CchhhcCCCCCCEEeccCC-ccccc-CchhhcCCC-CCceeeccCC--ccc-cccchhhhcCCCCcEEE
Q 012103 313 LYTN-KLTGA-LPQELGSWAEFDFIDVSEN-LLTGP-IPPDMCKRG-TMRDLLMLQN--KFT-GEIPATYANCLTLQRFR 384 (471)
Q Consensus 313 L~~n-~l~~~-~~~~~~~~~~L~~L~L~~n-~l~~~-~p~~~~~~~-~L~~L~l~~n--~~~-~~~~~~~~~~~~L~~L~ 384 (471)
+++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|+.|++++| .++ +.++..+..+++|++|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 5555 34432 3444455555555555555 55432 344455555 5566666555 333 23444555566666666
Q ss_pred ccCCc-CcccccccccCCCCCCEeecccCc-cccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcC
Q 012103 385 VSNNS-LKGTVPAGIWGLPEVNIIDIALNQ-IEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQL 462 (471)
Q Consensus 385 L~~n~-~~~~~~~~~~~~~~L~~L~ls~n~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~ 462 (471)
+++|. +++..+..+..+++|+.|++++|. +.......+.++++|+.|++++| +....-..+. ..+..|++++|++
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l 305 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHF 305 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCS
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccC
Confidence 66665 444445555555666666666663 22222224555666666666666 3322222221 1234444566666
Q ss_pred cccCCCCC
Q 012103 463 TGKIPASI 470 (471)
Q Consensus 463 sg~ip~~~ 470 (471)
+|..|..+
T Consensus 306 ~~~~~~~~ 313 (336)
T 2ast_B 306 TTIARPTI 313 (336)
T ss_dssp CCTTCSSC
T ss_pred ccccCCcc
Confidence 66666544
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-24 Score=198.00 Aligned_cols=210 Identities=21% Similarity=0.245 Sum_probs=142.3
Q ss_pred ccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCC
Q 012103 207 IGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLV 285 (471)
Q Consensus 207 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~ 285 (471)
...+++|+.|++++|.+. .+ ..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+ .+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 445667777777777765 22 246667777777777777764 2 356677777777777777766555 456677777
Q ss_pred EEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCc
Q 012103 286 TLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNK 365 (471)
Q Consensus 286 ~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~ 365 (471)
+|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 77777777776655566677777777777777775555556667777777777777775555555667777777777777
Q ss_pred cccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCC
Q 012103 366 FTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKA 427 (471)
Q Consensus 366 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~ 427 (471)
+++..+..+..+++|+.|++++|.+.+. ++.|+.++++.|.++|.+|..++.+..
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 7766666667777777777777766633 445677777777777777766665443
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-25 Score=213.64 Aligned_cols=253 Identities=18% Similarity=0.141 Sum_probs=143.3
Q ss_pred EEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCC----ccccCCC-CCcEEEcccCcCCCcCCccccCC-----C
Q 012103 166 SLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIP----VEIGNLT-ELINLELSDNNISGEIPSEIGNL-----V 235 (471)
Q Consensus 166 ~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~ 235 (471)
+++++.|.+ .+.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ +
T Consensus 2 ~~~ls~n~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPG-SNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTT-CCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccc-hHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 355666666 33445555555567777777777775544 5566666 67777777777776555555553 6
Q ss_pred CCCeEeeccccccccCCccc----cCC-CCCCEEeCCCCcCccccc-----cCCC-CCCCCEEEccCCcCcccc----ch
Q 012103 236 KLWRLELYNNQLSGKLPVGL----RNL-TNLANFDASTNFLEGDLS-----EVRF-LTNLVTLQLFKNQFSGEV----PA 300 (471)
Q Consensus 236 ~L~~L~l~~n~l~~~~~~~l----~~l-~~L~~L~l~~n~~~~~~~-----~~~~-~~~L~~L~l~~n~l~~~~----~~ 300 (471)
+|++|++++|.+++..+..+ ..+ ++|++|++++|.+++... .+.. .++|++|++++|.+++.. +.
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 77777777777765544433 333 667777777776654433 1223 246666666666666432 23
Q ss_pred hccCCC-CCCEEEcccCcCcccCchh----hcCC-CCCCEEeccCCccccc----CchhhcC-CCCCceeeccCCccccc
Q 012103 301 ELGKFK-KLVNLSLYTNKLTGALPQE----LGSW-AEFDFIDVSENLLTGP----IPPDMCK-RGTMRDLLMLQNKFTGE 369 (471)
Q Consensus 301 ~l~~~~-~L~~L~L~~n~l~~~~~~~----~~~~-~~L~~L~L~~n~l~~~----~p~~~~~-~~~L~~L~l~~n~~~~~ 369 (471)
.+...+ +|++|++++|.+++..+.. +..+ ++|++|++++|.+++. ++..+.. .++|+.|++++|.+++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 333443 6666666666666544432 2233 3666666666666532 3333433 34666666666666543
Q ss_pred cc----hhhhcCCCCcEEEccCCcCccc-------ccccccCCCCCCEeecccCccccccc
Q 012103 370 IP----ATYANCLTLQRFRVSNNSLKGT-------VPAGIWGLPEVNIIDIALNQIEGPIT 419 (471)
Q Consensus 370 ~~----~~~~~~~~L~~L~L~~n~~~~~-------~~~~~~~~~~L~~L~ls~n~~~~~~~ 419 (471)
.+ ..+..+++|++|++++|.+.+. ++..+..+++|+.||+++|++.+..+
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 32 2234455666666666653321 22344555566666666666655433
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-25 Score=213.38 Aligned_cols=280 Identities=18% Similarity=0.148 Sum_probs=201.9
Q ss_pred EEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCC----ccccCCC-CCCeEeeccccccccCCccccCC-----CC
Q 012103 191 WLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIP----SEIGNLV-KLWRLELYNNQLSGKLPVGLRNL-----TN 260 (471)
Q Consensus 191 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p----~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l-----~~ 260 (471)
++.++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788999998888877777779999999999987666 6777888 89999999999987767666654 99
Q ss_pred CCEEeCCCCcCccccc-----cCCCC-CCCCEEEccCCcCccccchhc----cC-CCCCCEEEcccCcCcccC----chh
Q 012103 261 LANFDASTNFLEGDLS-----EVRFL-TNLVTLQLFKNQFSGEVPAEL----GK-FKKLVNLSLYTNKLTGAL----PQE 325 (471)
Q Consensus 261 L~~L~l~~n~~~~~~~-----~~~~~-~~L~~L~l~~n~l~~~~~~~l----~~-~~~L~~L~L~~n~l~~~~----~~~ 325 (471)
|++|++++|.+++..+ .+... ++|++|++++|.+++..+..+ .. .++|++|++++|.+++.. +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999986554 24444 899999999999987665443 33 369999999999998543 344
Q ss_pred hcCCC-CCCEEeccCCcccccCchhh----cCC-CCCceeeccCCccccc----cchhhhc-CCCCcEEEccCCcCcccc
Q 012103 326 LGSWA-EFDFIDVSENLLTGPIPPDM----CKR-GTMRDLLMLQNKFTGE----IPATYAN-CLTLQRFRVSNNSLKGTV 394 (471)
Q Consensus 326 ~~~~~-~L~~L~L~~n~l~~~~p~~~----~~~-~~L~~L~l~~n~~~~~----~~~~~~~-~~~L~~L~L~~n~~~~~~ 394 (471)
+...+ +|++|++++|.+++..+..+ ..+ ++|+.|++++|.+++. ++..+.. .++|++|++++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 45555 89999999999987666544 344 5999999999999863 4555655 469999999999998653
Q ss_pred c----ccccCCCCCCEeecccCccccccc-------hhhhccCCCCeeeCCCCcCcccchhhhhc----------CCCC-
Q 012103 395 P----AGIWGLPEVNIIDIALNQIEGPIT-------KDIENAKALNLLFAEYNRLSGELPEEISK----------ATSL- 452 (471)
Q Consensus 395 ~----~~~~~~~~L~~L~ls~n~~~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~p~~l~~----------l~~L- 452 (471)
+ ..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|++.+..+..+.+ .+++
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~~l~~~~~~~~~psll 321 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLL 321 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHHHHHHHHTCCCTTTC-
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHHHHHHCCCCcchHHHH
Confidence 3 345778899999999999654433 35567788999999999998765544422 2333
Q ss_pred --CEEeccCCcCc---ccCCCCC
Q 012103 453 --VVIKLNNNQLT---GKIPASI 470 (471)
Q Consensus 453 --~~L~l~~n~~s---g~ip~~~ 470 (471)
..+.+..|++. +.||+++
T Consensus 322 ~~~~~~~~~n~~~~~~~~iP~~l 344 (362)
T 3goz_A 322 NQCLIFAQKHQTNIEDLNIPDEL 344 (362)
T ss_dssp -----------------------
T ss_pred hhhhheeeccccCcchhhCcHHH
Confidence 33455666554 4566654
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7.8e-23 Score=190.24 Aligned_cols=201 Identities=20% Similarity=0.172 Sum_probs=109.7
Q ss_pred CCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEE
Q 012103 209 NLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQ 288 (471)
Q Consensus 209 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~ 288 (471)
+++++++++++++.++ .+|..+. +.+++|++++|.+++..+..+..+++|++|++++|.+++..+ ...+++|++|+
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~ 83 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLD 83 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEE
T ss_pred ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-CCCCCcCCEEE
Confidence 3444444444444444 2333222 344444444444444444444445555555555555443222 24455556666
Q ss_pred ccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCcccc
Q 012103 289 LFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTG 368 (471)
Q Consensus 289 l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~ 368 (471)
+++|.++ .+|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|+++.
T Consensus 84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 6665555 445555555666666666666664444555666666666666666654433444556666666666666664
Q ss_pred ccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccc
Q 012103 369 EIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIE 415 (471)
Q Consensus 369 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~ 415 (471)
..+..|..+++|+.|++++|+++ .+|..+...+.|+.+++++|++.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 44445556666666666666666 55666666666666666666654
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-25 Score=215.11 Aligned_cols=245 Identities=18% Similarity=0.178 Sum_probs=139.6
Q ss_pred CCCCccccCCCCCCEEEcccccCcccCC----ccccCCCCCcEEEcccCc---CCCcCCccc-------cCCCCCCeEee
Q 012103 177 TPFPDQVVKLNKLNWLYLTNCSIDGQIP----VEIGNLTELINLELSDNN---ISGEIPSEI-------GNLVKLWRLEL 242 (471)
Q Consensus 177 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~L~~n~---l~~~~p~~~-------~~l~~L~~L~l 242 (471)
..++..+..+++|++|++++|.+....+ ..+..+++|+.|++++|. +.+.+|..+ ..+++|++|++
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 3456778889999999999999986533 447789999999999964 444556554 56677777777
Q ss_pred ccccccc----cCCccccCCCCCCEEeCCCCcCccccc-----cCCCC---------CCCCEEEccCCcCc-cccchhcc
Q 012103 243 YNNQLSG----KLPVGLRNLTNLANFDASTNFLEGDLS-----EVRFL---------TNLVTLQLFKNQFS-GEVPAELG 303 (471)
Q Consensus 243 ~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~-----~~~~~---------~~L~~L~l~~n~l~-~~~~~~l~ 303 (471)
++|.+.+ .++..+..+++|++|++++|.+....+ .+..+ ++|++|++++|.++ +.++.
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--- 178 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE--- 178 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH---
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH---
Confidence 7777765 345556666666666666666643221 11111 44555555555544 12221
Q ss_pred CCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccc-----cCchhhcCCCCCceeeccCCccc----cccchhh
Q 012103 304 KFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTG-----PIPPDMCKRGTMRDLLMLQNKFT----GEIPATY 374 (471)
Q Consensus 304 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-----~~p~~~~~~~~L~~L~l~~n~~~----~~~~~~~ 374 (471)
+...+..+++|++|++++|.++. .+|..+..+++|+.|++++|.++ ..++..+
T Consensus 179 ------------------l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l 240 (386)
T 2ca6_A 179 ------------------WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240 (386)
T ss_dssp ------------------HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred ------------------HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence 00233344445555555554431 12224444555555555555553 3444455
Q ss_pred hcCCCCcEEEccCCcCccc----ccccc--cCCCCCCEeecccCcccc----ccchhh-hccCCCCeeeCCCCcCcccc
Q 012103 375 ANCLTLQRFRVSNNSLKGT----VPAGI--WGLPEVNIIDIALNQIEG----PITKDI-ENAKALNLLFAEYNRLSGEL 442 (471)
Q Consensus 375 ~~~~~L~~L~L~~n~~~~~----~~~~~--~~~~~L~~L~ls~n~~~~----~~~~~~-~~l~~L~~L~l~~n~l~~~~ 442 (471)
..+++|+.|++++|.+++. ++..+ ..+++|+.|++++|.+++ .+|..+ .++++|+.|++++|++++..
T Consensus 241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 5555555555555555533 33444 225556666666666655 345444 44566666666666665544
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-24 Score=205.71 Aligned_cols=233 Identities=13% Similarity=0.108 Sum_probs=143.7
Q ss_pred CCCcEEEcccCcCCCcCCccccCCCCCCeEeecccccccc-CCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEE
Q 012103 211 TELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGK-LPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQ 288 (471)
Q Consensus 211 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~ 288 (471)
++++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+ .+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4455555555555443333 33455555555555555433 44445555566666666665554333 455566666666
Q ss_pred ccCC-cCccc-cchhccCCCCCCEEEcccC-cCccc-CchhhcCCC-CCCEEeccCC--ccc-ccCchhhcCCCCCceee
Q 012103 289 LFKN-QFSGE-VPAELGKFKKLVNLSLYTN-KLTGA-LPQELGSWA-EFDFIDVSEN--LLT-GPIPPDMCKRGTMRDLL 360 (471)
Q Consensus 289 l~~n-~l~~~-~~~~l~~~~~L~~L~L~~n-~l~~~-~~~~~~~~~-~L~~L~L~~n--~l~-~~~p~~~~~~~~L~~L~ 360 (471)
+++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.+|..+..+++|+.|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 6666 45542 4555666777777777777 66643 455566677 7777777777 344 35566666777788888
Q ss_pred ccCCc-cccccchhhhcCCCCcEEEccCCc-CcccccccccCCCCCCEeecccCccccccchhhhcc-CCCCeeeCCCCc
Q 012103 361 MLQNK-FTGEIPATYANCLTLQRFRVSNNS-LKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENA-KALNLLFAEYNR 437 (471)
Q Consensus 361 l~~n~-~~~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l-~~L~~L~l~~n~ 437 (471)
+++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| ++.. .+..+ ..+..|++++|+
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSH 304 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCC
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEeccc
Confidence 87777 666666677777888888888874 33222235667788888888887 4432 23333 346667788888
Q ss_pred Ccccchhhhhc
Q 012103 438 LSGELPEEISK 448 (471)
Q Consensus 438 l~~~~p~~l~~ 448 (471)
+++..|..+++
T Consensus 305 l~~~~~~~~~~ 315 (336)
T 2ast_B 305 FTTIARPTIGN 315 (336)
T ss_dssp SCCTTCSSCSS
T ss_pred CccccCCcccc
Confidence 88877776654
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=184.86 Aligned_cols=190 Identities=24% Similarity=0.274 Sum_probs=143.5
Q ss_pred CCceeeceEeCCCCCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccC
Q 012103 51 HFCNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSF 130 (471)
Q Consensus 51 ~~c~~~gv~c~~~~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 130 (471)
.|+.|.|..|.. ..++++++++.++ .+|.. +. ++++.|++++|.+.+..+..|.++++|++|++++|.+++..
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 75 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS 75 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred cCCCCCceEcCC---CCeEEecCCCCcc-ccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC
Confidence 578999999953 3567999999998 77754 33 68999999999999888888999999999999999998877
Q ss_pred C-CCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccC
Q 012103 131 P-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGN 209 (471)
Q Consensus 131 ~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 209 (471)
+ .+.++++|++|++++|.+++..+ ..+..+++|++|++++|.+. ...+..+..+++|++|++++|.+++..+..+..
T Consensus 76 ~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 153 (251)
T 3m19_A 76 AGVFDDLTELGTLGLANNQLASLPL-GVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK 153 (251)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred HhHhccCCcCCEEECCCCcccccCh-hHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCc
Confidence 7 67888888888888888887666 67777888888888888773 222334566777777777777777555556677
Q ss_pred CCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccc
Q 012103 210 LTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSG 249 (471)
Q Consensus 210 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 249 (471)
+++|+.|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 154 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 7777777777777775555566666667777776666654
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-23 Score=196.11 Aligned_cols=199 Identities=16% Similarity=0.154 Sum_probs=127.0
Q ss_pred CCCEEeCCCCcCccccc-cC--CCCCCCCEEEccCCcCccccc----hhccCCCCCCEEEcccCcCcccCchhhcCCCCC
Q 012103 260 NLANFDASTNFLEGDLS-EV--RFLTNLVTLQLFKNQFSGEVP----AELGKFKKLVNLSLYTNKLTGALPQELGSWAEF 332 (471)
Q Consensus 260 ~L~~L~l~~n~~~~~~~-~~--~~~~~L~~L~l~~n~l~~~~~----~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L 332 (471)
+|++|++++|.+.+..+ .+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 34555555554444433 22 445555555555555554333 223345666777777776665555666666677
Q ss_pred CEEeccCCccccc--Cc--hhhcCCCCCceeeccCCccccccch----hhhcCCCCcEEEccCCcCcccccccccCC---
Q 012103 333 DFIDVSENLLTGP--IP--PDMCKRGTMRDLLMLQNKFTGEIPA----TYANCLTLQRFRVSNNSLKGTVPAGIWGL--- 401 (471)
Q Consensus 333 ~~L~L~~n~l~~~--~p--~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~L~L~~n~~~~~~~~~~~~~--- 401 (471)
++|++++|++.+. ++ ..+..+++|+.|++++|+++. ++. .+..+++|++|++++|++++..|..+..+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 7777777765432 21 122456677777777777752 222 24677788888888888887667666555
Q ss_pred CCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCcc
Q 012103 402 PEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTG 464 (471)
Q Consensus 402 ~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg 464 (471)
++|++|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|+.|++++|+|+.
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 58888888888888 5565553 7888888888888853 33 5677888888888888874
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-22 Score=183.05 Aligned_cols=180 Identities=14% Similarity=0.146 Sum_probs=140.1
Q ss_pred CCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccC
Q 012103 260 NLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSE 339 (471)
Q Consensus 260 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 339 (471)
..++++++++.+...+..+. ++++.|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 45678888888775544433 6788888888888877777788888888888888888876676777888888888888
Q ss_pred CcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccc
Q 012103 340 NLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPIT 419 (471)
Q Consensus 340 n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~ 419 (471)
|.+++..+..+..+++|+.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 88876555667778888888888888886666667778888888888888886555567788888888888888887777
Q ss_pred hhhhccCCCCeeeCCCCcCccc
Q 012103 420 KDIENAKALNLLFAEYNRLSGE 441 (471)
Q Consensus 420 ~~~~~l~~L~~L~l~~n~l~~~ 441 (471)
..+..+++|+.|++++|++.+.
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHhCCCCCCEEEeeCCceeCC
Confidence 7777888888888888888765
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=191.30 Aligned_cols=199 Identities=15% Similarity=0.165 Sum_probs=123.9
Q ss_pred CCCeEeeccccccccCCccc--cCCCCCCEEeCCCCcCccccc-----cCCCCCCCCEEEccCCcCccccchhccCCCCC
Q 012103 236 KLWRLELYNNQLSGKLPVGL--RNLTNLANFDASTNFLEGDLS-----EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKL 308 (471)
Q Consensus 236 ~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~-----~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L 308 (471)
+|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ .+..+++|++|++++|.+.+..+..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 34444444444444444333 444444444444444443211 22345666667777776666666666667777
Q ss_pred CEEEcccCcCccc--Cc--hhhcCCCCCCEEeccCCcccccCch----hhcCCCCCceeeccCCccccccchhhhcC---
Q 012103 309 VNLSLYTNKLTGA--LP--QELGSWAEFDFIDVSENLLTGPIPP----DMCKRGTMRDLLMLQNKFTGEIPATYANC--- 377 (471)
Q Consensus 309 ~~L~L~~n~l~~~--~~--~~~~~~~~L~~L~L~~n~l~~~~p~----~~~~~~~L~~L~l~~n~~~~~~~~~~~~~--- 377 (471)
++|++++|++.+. ++ ..+..+++|++|++++|.++ .++. .+..+++|+.|++++|++.+..|..+..+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 7777777766542 11 12356677777777777775 2332 23556777777777777776666666555
Q ss_pred CCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcc
Q 012103 378 LTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSG 440 (471)
Q Consensus 378 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 440 (471)
++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|+.|++++|+++.
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 58888888888888 6676654 6888888888888864 32 5677888888888888763
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-22 Score=183.00 Aligned_cols=196 Identities=13% Similarity=0.125 Sum_probs=146.7
Q ss_pred CCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCc-CccccchhccCCCCCCEEEccc-CcCcccCchhhcCCCCCCEEe
Q 012103 260 NLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQ-FSGEVPAELGKFKKLVNLSLYT-NKLTGALPQELGSWAEFDFID 336 (471)
Q Consensus 260 ~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~L~ 336 (471)
+|++|++++|.+++..+ .+..+++|++|++++|. +++..+..+..+++|++|++++ |.+++..+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666665555 56667777777777775 6655555677777888888877 777755556677778888888
Q ss_pred ccCCcccccCchhhcCCCCCc---eeeccCC-ccccccchhhhcCCCCc-EEEccCCcCcccccccccCCCCCCEeeccc
Q 012103 337 VSENLLTGPIPPDMCKRGTMR---DLLMLQN-KFTGEIPATYANCLTLQ-RFRVSNNSLKGTVPAGIWGLPEVNIIDIAL 411 (471)
Q Consensus 337 L~~n~l~~~~p~~~~~~~~L~---~L~l~~n-~~~~~~~~~~~~~~~L~-~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~ 411 (471)
+++|.+++ +|. +..+++|+ .|++++| .+++..+..|..+++|+ .|++++|+++ .+|......++|+.|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence 88888774 665 66677777 8888888 88766666788888999 9999999888 5655443447899999999
Q ss_pred Cc-cccccchhhhcc-CCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCc
Q 012103 412 NQ-IEGPITKDIENA-KALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQ 461 (471)
Q Consensus 412 n~-~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 461 (471)
|+ +++..+..+.++ ++|+.|++++|+++ .+|.. .+++|+.|+++++.
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 95 887667778888 89999999999998 45544 56788999988763
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=4e-22 Score=187.25 Aligned_cols=207 Identities=17% Similarity=0.315 Sum_probs=137.6
Q ss_pred EcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCcc
Q 012103 217 ELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSG 296 (471)
Q Consensus 217 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~ 296 (471)
.+..+.+.+.+ ....+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++
T Consensus 25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~ 99 (308)
T 1h6u_A 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN 99 (308)
T ss_dssp HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC
T ss_pred HhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC
Confidence 34444444322 23456778888888887763 44 46777788888888887775554 6777777777777777764
Q ss_pred ccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhc
Q 012103 297 EVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYAN 376 (471)
Q Consensus 297 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 376 (471)
++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ ++. +..+++|+.|++++|.+++..+ +..
T Consensus 100 -~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~ 171 (308)
T 1h6u_A 100 -VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSDLTP--LAN 171 (308)
T ss_dssp -CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG--GTT
T ss_pred -ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCCChh--hcC
Confidence 23 46677777777777777764 332 6677777777777777763 332 6667777777777777764332 667
Q ss_pred CCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcc
Q 012103 377 CLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSG 440 (471)
Q Consensus 377 ~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 440 (471)
+++|+.|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++++
T Consensus 172 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 172 LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 7777777777777764332 5666777777777777765442 6667777777777777763
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.5e-22 Score=186.94 Aligned_cols=196 Identities=21% Similarity=0.314 Sum_probs=170.0
Q ss_pred ccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCE
Q 012103 207 IGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVT 286 (471)
Q Consensus 207 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~ 286 (471)
...+++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+. +.+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV-SAIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC-GGGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc-hhhcCCCCCCE
Confidence 4567899999999999984 55 588899999999999999854 44 89999999999999998864 57888999999
Q ss_pred EEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCcc
Q 012103 287 LQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKF 366 (471)
Q Consensus 287 L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~ 366 (471)
|++++|.+++. +. +..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++. +..+++|+.|++++|.+
T Consensus 112 L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCcc
Confidence 99999999864 43 8899999999999999985433 7889999999999999984 554 88899999999999999
Q ss_pred ccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccc
Q 012103 367 TGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGP 417 (471)
Q Consensus 367 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~ 417 (471)
++..+ +..+++|+.|++++|++++.. .+..+++|+.|++++|++++.
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence 86543 889999999999999999554 388999999999999999863
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.4e-22 Score=178.60 Aligned_cols=196 Identities=17% Similarity=0.132 Sum_probs=136.4
Q ss_pred CCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCc-CCccCC-CCCCCCCCCEEEccC-CCCcccCCcccccCCCCCcE
Q 012103 90 QALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNV-FSGSFP-EISSLNELQHLYLNL-SGFSGVFPWMSLGNMTNLVS 166 (471)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~ 166 (471)
++|++|++++|.+++..+..|.++++|++|++++|. +++..+ .+.++++|++|++++ |.+++..+ ..+.++++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~-~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP-DALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT-TSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH-HHhCCCCCCCE
Confidence 378888888888887666678888888888888886 777666 677888888888887 88877666 67778888888
Q ss_pred EEccCCCCCCCCCCccccCCCCCC---EEEcccc-cCcccCCccccCCCCCc-EEEcccCcCCCcCCccccCCCCCCeEe
Q 012103 167 LSVGDNPFDPTPFPDQVVKLNKLN---WLYLTNC-SIDGQIPVEIGNLTELI-NLELSDNNISGEIPSEIGNLVKLWRLE 241 (471)
Q Consensus 167 L~l~~n~~~~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~p~~~~~l~~L~~L~ 241 (471)
|++++|.+.. +|. +..+++|+ +|++++| .+.+..+..|..+++|+ .|++++|.++ .+|.......+|++|+
T Consensus 110 L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~ 185 (239)
T 2xwt_C 110 LGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVY 185 (239)
T ss_dssp EEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEE
T ss_pred EeCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEE
Confidence 8888888733 454 66677776 7788777 77765555677777777 7777777776 4444333336677777
Q ss_pred ecccc-ccccCCccccCC-CCCCEEeCCCCcCccccccCCCCCCCCEEEccCC
Q 012103 242 LYNNQ-LSGKLPVGLRNL-TNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKN 292 (471)
Q Consensus 242 l~~n~-l~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n 292 (471)
+++|+ +++..+..+..+ ++|++|++++|.+++..+. .+++|+.|+++++
T Consensus 186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred cCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 77773 664445555666 6666666666666533322 3455555555543
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.9e-21 Score=169.27 Aligned_cols=176 Identities=16% Similarity=0.153 Sum_probs=99.7
Q ss_pred CCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeec
Q 012103 282 TNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLM 361 (471)
Q Consensus 282 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l 361 (471)
+++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 35555555555555444444555556666666666655433334455566666666666665333334455666666666
Q ss_pred cCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCccc
Q 012103 362 LQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGE 441 (471)
Q Consensus 362 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 441 (471)
++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+ .+++|+.|+++.|+++|.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce
Confidence 6666665444455666666666666666664444445666666666666665553 234566666666666666
Q ss_pred chhhhhcCCCCCEEeccCCcCcccCCC
Q 012103 442 LPEEISKATSLVVIKLNNNQLTGKIPA 468 (471)
Q Consensus 442 ~p~~l~~l~~L~~L~l~~n~~sg~ip~ 468 (471)
+|..++.++. ++..|...|..+.
T Consensus 181 ip~~~~~l~~----~~~~C~~~~~~~~ 203 (208)
T 2o6s_A 181 VRNSAGSVAP----DSAKCSGSGKPVR 203 (208)
T ss_dssp BBCTTSSBCT----TCSBBTTTCCBGG
T ss_pred eeccCccccC----CccccccCCCcce
Confidence 6666665543 3444444444433
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.7e-21 Score=169.42 Aligned_cols=177 Identities=14% Similarity=0.124 Sum_probs=153.2
Q ss_pred CEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCC
Q 012103 285 VTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQN 364 (471)
Q Consensus 285 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n 364 (471)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 56777777777 455443 368999999999999766667889999999999999998555556788999999999999
Q ss_pred ccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchh
Q 012103 365 KFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPE 444 (471)
Q Consensus 365 ~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 444 (471)
++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 9997777778999999999999999997666678999999999999999998777778999999999999998875
Q ss_pred hhhcCCCCCEEeccCCcCcccCCCCCC
Q 012103 445 EISKATSLVVIKLNNNQLTGKIPASIY 471 (471)
Q Consensus 445 ~l~~l~~L~~L~l~~n~~sg~ip~~~~ 471 (471)
.+++|+.|++++|+++|.||++++
T Consensus 163 ---~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp ---CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred ---CCCCHHHHHHHHHhCCceeeccCc
Confidence 456799999999999999998874
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.85 E-value=7e-21 Score=191.79 Aligned_cols=188 Identities=27% Similarity=0.344 Sum_probs=157.6
Q ss_pred CCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEccc
Q 012103 236 KLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYT 315 (471)
Q Consensus 236 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~ 315 (471)
++++|++++|.+++ +|..+ .++|++|++++|.++. ++ ..+++|++|++++|.+++ +|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 89999999999986 66655 3789999999999984 44 567999999999999996 666 554 899999999
Q ss_pred CcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCccccc
Q 012103 316 NKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVP 395 (471)
Q Consensus 316 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~ 395 (471)
|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|++++ +|. +. ++|+.|++++|+++ .+|
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence 99986 665 67899999999999985 776 57899999999999986 666 55 89999999999999 777
Q ss_pred ccccCCCCC-------CEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCC
Q 012103 396 AGIWGLPEV-------NIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKAT 450 (471)
Q Consensus 396 ~~~~~~~~L-------~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 450 (471)
. +.. +| +.|++++|+++ .+|..+..+++|+.|++++|++++.+|..+..++
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 7 554 67 99999999998 4788888899999999999999999999888753
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=188.26 Aligned_cols=199 Identities=19% Similarity=0.287 Sum_probs=138.8
Q ss_pred CCCCCCCCCCc-----eeece-EeCCCCCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCC
Q 012103 43 FSSWVSNNHFC-----NFTGI-TCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKL 116 (471)
Q Consensus 43 ~~~w~~~~~~c-----~~~gv-~c~~~~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 116 (471)
+..|..+..+| .|.++ .|. ..+++.|+++++++++ +|.. + +++|++|++++|.++ .+| ..+++|
T Consensus 33 l~~W~~~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~n~L~~-lp~~-l--~~~L~~L~Ls~N~l~-~ip---~~l~~L 102 (571)
T 3cvr_A 33 WDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSS-LPDN-L--PPQITVLEITQNALI-SLP---ELPASL 102 (571)
T ss_dssp HHHHHTTCCTTCCHHHHHHHHHHHH--HTTCSEEECCSSCCSC-CCSC-C--CTTCSEEECCSSCCS-CCC---CCCTTC
T ss_pred HHHHhccCCccccccchhhhccccc--cCCccEEEeCCCCCCc-cCHh-H--cCCCCEEECcCCCCc-ccc---cccCCC
Confidence 34565566667 69998 786 3579999999999985 7765 3 378999999999998 566 457899
Q ss_pred CEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEccc
Q 012103 117 QYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTN 196 (471)
Q Consensus 117 ~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~ 196 (471)
++|++++|.+++.+. +.+ +|++|++++|.+++ +| . .+++|++|++++|.++. +|. .+++|++|++++
T Consensus 103 ~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~-lp-~---~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 103 EYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTM-LP-E---LPALLEYINADNNQLTM--LPE---LPTSLEVLSVRN 169 (571)
T ss_dssp CEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSC-CC-C---CCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCS
T ss_pred CEEEccCCCCCCcch-hhc--CCCEEECCCCcCCC-CC-C---cCccccEEeCCCCccCc--CCC---cCCCcCEEECCC
Confidence 999999999988544 544 88899999888887 44 2 57888888888888743 454 467788888888
Q ss_pred ccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCC-------CeEeeccccccccCCccccCCCCCCEEeCCCC
Q 012103 197 CSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKL-------WRLELYNNQLSGKLPVGLRNLTNLANFDASTN 269 (471)
Q Consensus 197 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-------~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 269 (471)
|.+++ +|. +. ++|+.|++++|.++ .+|. +.. +| ++|++++|.++ .+|..+..+++|+.|++++|
T Consensus 170 N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 170 NQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp SCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSS
T ss_pred CCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCC
Confidence 88775 555 54 77888888887777 5555 433 44 55555555555 34444444555555555555
Q ss_pred cCcc
Q 012103 270 FLEG 273 (471)
Q Consensus 270 ~~~~ 273 (471)
.+++
T Consensus 241 ~l~~ 244 (571)
T 3cvr_A 241 PLSS 244 (571)
T ss_dssp SCCH
T ss_pred cCCC
Confidence 4444
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-20 Score=178.01 Aligned_cols=240 Identities=13% Similarity=0.079 Sum_probs=175.6
Q ss_pred CEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCC-ccccCCCCCCE-EeCC
Q 012103 190 NWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLP-VGLRNLTNLAN-FDAS 267 (471)
Q Consensus 190 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~-L~l~ 267 (471)
+.++.++++++ .+|..+ .+++++|++++|+++...+..|.++++|++|++++|.+.+.++ ..|.+++++.+ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 57788888888 677665 3589999999999985445578899999999999999866554 45778888776 5556
Q ss_pred CCcCccccc-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEccc-CcCcccCchhhcCC-CCCCEEeccCCcccc
Q 012103 268 TNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYT-NKLTGALPQELGSW-AEFDFIDVSENLLTG 344 (471)
Q Consensus 268 ~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~-n~l~~~~~~~~~~~-~~L~~L~L~~n~l~~ 344 (471)
+|++....+ .+..+++|++|++++|.+....+..+....++..+++.+ +.+....+..+..+ ..++.|++++|.++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 688887666 778889999999999998866666666667788888866 45654333444444 36888999999987
Q ss_pred cCchhhcCCCCCceeeccC-CccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhh
Q 012103 345 PIPPDMCKRGTMRDLLMLQ-NKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIE 423 (471)
Q Consensus 345 ~~p~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~ 423 (471)
.+|.......+++.+++++ |.++...+..|..+++|++|++++|+++ .+|.. .+.+|+.|.+.++.-...+| .+.
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~ 243 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLP-TLE 243 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCC-CTT
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCC-Cch
Confidence 6666666677888888875 4555433456788899999999999988 45542 24456666655554444566 477
Q ss_pred ccCCCCeeeCCCCc
Q 012103 424 NAKALNLLFAEYNR 437 (471)
Q Consensus 424 ~l~~L~~L~l~~n~ 437 (471)
++++|+.+++.++.
T Consensus 244 ~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 244 KLVALMEASLTYPS 257 (350)
T ss_dssp TCCSCCEEECSCHH
T ss_pred hCcChhhCcCCCCc
Confidence 88888888887653
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-19 Score=170.98 Aligned_cols=122 Identities=16% Similarity=0.106 Sum_probs=58.2
Q ss_pred cEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEccCCCCcccCCcccccCCCCCcE-EEcc
Q 012103 93 HKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVS-LSVG 170 (471)
Q Consensus 93 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~-L~l~ 170 (471)
++++.++++++ .+|..+ .+++++|+|++|+++..++ .+.++++|++|++++|.+.+.++...|.++++++. +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34555555554 344443 2456666666666665554 45566666666666665554444344555555443 3333
Q ss_pred CCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEc
Q 012103 171 DNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLEL 218 (471)
Q Consensus 171 ~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 218 (471)
.|++. ...|..+..+++|++|++++|.+....+..+....++..+++
T Consensus 89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l 135 (350)
T 4ay9_X 89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 135 (350)
T ss_dssp ETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEE
T ss_pred CCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhh
Confidence 34441 111334444445555555555444333333333334444444
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.6e-19 Score=158.29 Aligned_cols=165 Identities=20% Similarity=0.209 Sum_probs=134.5
Q ss_pred CCCCCCCCCCceeeceEeCCCCCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCC
Q 012103 43 FSSWVSNNHFCNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLG 122 (471)
Q Consensus 43 ~~~w~~~~~~c~~~gv~c~~~~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 122 (471)
...|......|.|.+|.|.. +.+. .+|.. + .++|++|++++|.+++..|..|.++++|++|+++
T Consensus 9 ~~~~~~~~~~Cs~~~v~c~~------------~~l~-~ip~~-~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 72 (229)
T 3e6j_A 9 HSAACPSQCSCSGTTVDCRS------------KRHA-SVPAG-I--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLG 72 (229)
T ss_dssp --CCCCTTCEEETTEEECTT------------SCCS-SCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred hhccCCCCCEEeCCEeEccC------------CCcC-ccCCC-C--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECC
Confidence 34566678889999999974 3343 56643 2 3889999999999998888899999999999999
Q ss_pred CCcCCccCC-CCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcc
Q 012103 123 NNVFSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDG 201 (471)
Q Consensus 123 ~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 201 (471)
+|.+++.++ .+.++++|++|++++|.+++..+ ..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+
T Consensus 73 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~ 149 (229)
T 3e6j_A 73 SNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS-AVFDRLVHLKELFMCCNKLT--ELPRGIERLTHLTHLALDQNQLKS 149 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCC--SCCTTGGGCTTCSEEECCSSCCCC
T ss_pred CCCCCCcChhhcccCCCcCEEECCCCcCCccCh-hHhCcchhhCeEeccCCccc--ccCcccccCCCCCEEECCCCcCCc
Confidence 999987776 67889999999999999987766 67888999999999999884 567788888888888888888886
Q ss_pred cCCccccCCCCCcEEEcccCcCCCc
Q 012103 202 QIPVEIGNLTELINLELSDNNISGE 226 (471)
Q Consensus 202 ~~~~~l~~l~~L~~L~L~~n~l~~~ 226 (471)
..+..+..+++|+.|++++|.+...
T Consensus 150 ~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 150 IPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cCHHHHhCCCCCCEEEeeCCCccCC
Confidence 6666778888888888888887644
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-19 Score=159.61 Aligned_cols=155 Identities=15% Similarity=0.187 Sum_probs=108.8
Q ss_pred CEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCc-hhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccC
Q 012103 285 VTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALP-QELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQ 363 (471)
Q Consensus 285 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~ 363 (471)
+.+++++|.++ .+|..+. +.+++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 47777777777 4555443 356777777777776544 3466777777777777777755555677777777777777
Q ss_pred CccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccc
Q 012103 364 NKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGEL 442 (471)
Q Consensus 364 n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 442 (471)
|.+++..+..|..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|+.|++++|.+.+..
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 7777666666777777777777777777666667777777777777777777766777777777777777777776543
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.6e-19 Score=164.89 Aligned_cols=187 Identities=19% Similarity=0.271 Sum_probs=138.5
Q ss_pred eEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcC
Q 012103 239 RLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKL 318 (471)
Q Consensus 239 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l 318 (471)
.+.+..+.+.+.. .+..+++|+.|++++|.+... +.+..+++|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 28 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 28 KDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HHHhcCCCccccc--chhhcCcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 3344444444322 245678888999988888744 456778888888888888885444 77888888888888888
Q ss_pred cccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccc
Q 012103 319 TGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGI 398 (471)
Q Consensus 319 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~ 398 (471)
++ ++ .+..+++|++|++++|.+++ + ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|++++..+ +
T Consensus 103 ~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l 174 (291)
T 1h6t_A 103 KD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L 174 (291)
T ss_dssp CC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--h
Confidence 74 33 37788888888888888874 3 3577788888888888888754 567778888888888888885444 7
Q ss_pred cCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcc
Q 012103 399 WGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSG 440 (471)
Q Consensus 399 ~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 440 (471)
..+++|+.|++++|++++. + .+..+++|+.|++++|++..
T Consensus 175 ~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred cCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 7788888888888888753 3 37778888888888888764
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.1e-19 Score=170.01 Aligned_cols=176 Identities=19% Similarity=0.174 Sum_probs=110.7
Q ss_pred CEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhcc-CCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCC
Q 012103 262 ANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELG-KFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSEN 340 (471)
Q Consensus 262 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n 340 (471)
+.++++++.+...+..+ .+.++.|++++|.+++..+..+. .+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 46677777666543332 24567777777777765555555 6677777777777777555556666777777777777
Q ss_pred cccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccc---cCCCCCCEeecccCccccc
Q 012103 341 LLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGI---WGLPEVNIIDIALNQIEGP 417 (471)
Q Consensus 341 ~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~---~~~~~L~~L~ls~n~~~~~ 417 (471)
.+++..+..+..+++|+.|++++|++.+..+..|..+++|+.|+|++|++++..+..+ ..+++|+.|+|++|++++.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 7765444456666677777777777766666666666777777777777663222223 3466666667776666655
Q ss_pred cchhhhccCC--CCeeeCCCCcCc
Q 012103 418 ITKDIENAKA--LNLLFAEYNRLS 439 (471)
Q Consensus 418 ~~~~~~~l~~--L~~L~l~~n~l~ 439 (471)
.+..+..++. ++.|++++|.+.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhhhccHhhcceEEecCCCcc
Confidence 5555666655 356666666665
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.2e-19 Score=156.96 Aligned_cols=152 Identities=15% Similarity=0.244 Sum_probs=107.3
Q ss_pred CEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCC
Q 012103 285 VTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQN 364 (471)
Q Consensus 285 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n 364 (471)
+.++++++.++ .+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 56777777776 4555443 56777777777777655556777777777777777777666677777777777777777
Q ss_pred ccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCc
Q 012103 365 KFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 365 ~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 439 (471)
+++...+..|..+++|++|++++|++++..|..|..+++|++|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 777555555667777777777777777666666777777777777777777666666777777777777777665
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=155.48 Aligned_cols=156 Identities=18% Similarity=0.148 Sum_probs=119.0
Q ss_pred CCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeecc
Q 012103 283 NLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLML 362 (471)
Q Consensus 283 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~ 362 (471)
+.+.++.+++.++ .+|..+. ++|++|++++|.+.+..|..+..+++|++|++++|.++...+..+..+++|+.|+++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 3567888888777 5565443 678888888888887777777888888888888888864434456777888888888
Q ss_pred CCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccc
Q 012103 363 QNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGEL 442 (471)
Q Consensus 363 ~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 442 (471)
+|++++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.+..
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 88888666666777888888888888887 67777778888888888888888766667777888888888888877544
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.79 E-value=7.2e-19 Score=179.11 Aligned_cols=192 Identities=19% Similarity=0.276 Sum_probs=153.7
Q ss_pred CCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccC
Q 012103 212 ELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFK 291 (471)
Q Consensus 212 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~ 291 (471)
.+..+.+..+.+.+..+ +..+..|+.|++++|.+.. ++ .+..+++|+.|++++|.+.+..+ +..+++|+.|++++
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence 34455666666664433 4678889999999999874 44 58889999999999999887655 77889999999999
Q ss_pred CcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccc
Q 012103 292 NQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIP 371 (471)
Q Consensus 292 n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~ 371 (471)
|.+.+ ++ .+..+++|+.|+|++|.+.+ + ..+..+++|+.|+|++|.+++. ..+..+++|+.|++++|.+.+..|
T Consensus 97 N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 97 NKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 99884 33 67888999999999999885 3 3578889999999999998853 567888899999999999887655
Q ss_pred hhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCcccccc
Q 012103 372 ATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPI 418 (471)
Q Consensus 372 ~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~ 418 (471)
+..+++|+.|+|++|.+.+ ++ .+..+++|+.|+|++|++.+..
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECCC
T ss_pred --hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCCc
Confidence 8888999999999999985 44 5788899999999999887653
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=152.12 Aligned_cols=155 Identities=15% Similarity=0.190 Sum_probs=104.9
Q ss_pred cCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcE
Q 012103 303 GKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQR 382 (471)
Q Consensus 303 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 382 (471)
..+++|++|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|+.|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 33456666666666665 344 4566666777777766553 2235666777777777777777666667777777777
Q ss_pred EEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcC
Q 012103 383 FRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQL 462 (471)
Q Consensus 383 L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~ 462 (471)
|++++|++++..|..+..+++|++|++++|++.+.+| .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|+|
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 7777777776667777777788888888877223344 57778888888888888874 44 677788888888888887
Q ss_pred cc
Q 012103 463 TG 464 (471)
Q Consensus 463 sg 464 (471)
.+
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 64
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-18 Score=160.36 Aligned_cols=171 Identities=22% Similarity=0.302 Sum_probs=93.2
Q ss_pred cCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEE
Q 012103 208 GNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTL 287 (471)
Q Consensus 208 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L 287 (471)
..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+ ++.+..+++|++|
T Consensus 43 ~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L 117 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSSLKDLKKLKSL 117 (291)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGGGTTCTTCCEE
T ss_pred hhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-ChhhccCCCCCEE
Confidence 345666666666666653 33 35566666666666666664322 5566666666666666554 2345555666666
Q ss_pred EccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccc
Q 012103 288 QLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFT 367 (471)
Q Consensus 288 ~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~ 367 (471)
++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..| +..+++|+.|++++|.++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 6666655532 2345555555666655555532 344555555555555555553222 445555555555555555
Q ss_pred cccchhhhcCCCCcEEEccCCcCc
Q 012103 368 GEIPATYANCLTLQRFRVSNNSLK 391 (471)
Q Consensus 368 ~~~~~~~~~~~~L~~L~L~~n~~~ 391 (471)
+ ++ .+..+++|+.|++++|++.
T Consensus 192 ~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 192 D-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp B-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred C-Ch-hhccCCCCCEEECcCCccc
Confidence 3 22 2455555555555555554
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-18 Score=152.84 Aligned_cols=156 Identities=14% Similarity=0.155 Sum_probs=133.2
Q ss_pred CEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccc-hhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCC
Q 012103 262 ANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVP-AELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSEN 340 (471)
Q Consensus 262 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n 340 (471)
+.+++++|.++..+..+ ...+++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 57899999888654433 3567899999999987644 45788899999999999999777778889999999999999
Q ss_pred cccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccc
Q 012103 341 LLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPIT 419 (471)
Q Consensus 341 ~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~ 419 (471)
.+++..+..+..+++|+.|++++|++++..|..|..+++|+.|++++|++++..|..+..+++|+.|++++|++....+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 9987777778889999999999999998888889999999999999999998778889999999999999999886543
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-18 Score=152.43 Aligned_cols=153 Identities=15% Similarity=0.156 Sum_probs=133.2
Q ss_pred CEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCc
Q 012103 262 ANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENL 341 (471)
Q Consensus 262 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 341 (471)
+.++++++.++..+..+. +++++|++++|.+++..+..+..+++|++|++++|.+.+..|..+.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 578888888876554443 789999999999997777788999999999999999998888899999999999999999
Q ss_pred ccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCcccc
Q 012103 342 LTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEG 416 (471)
Q Consensus 342 l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~ 416 (471)
+++..+..+..+++|+.|++++|++.+..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|++..
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 984444456789999999999999998888899999999999999999997777778899999999999999875
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4e-18 Score=173.58 Aligned_cols=190 Identities=21% Similarity=0.269 Sum_probs=160.1
Q ss_pred CCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCC
Q 012103 189 LNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDAST 268 (471)
Q Consensus 189 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 268 (471)
+..+.+..+.+.... .+..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++
T Consensus 23 l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCccccc--chhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 444455556665433 35678899999999999884 44 58899999999999999986544 88999999999999
Q ss_pred CcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCch
Q 012103 269 NFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPP 348 (471)
Q Consensus 269 n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~ 348 (471)
|.+.+ ++.+..+++|+.|++++|.+.+ + ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+++..|
T Consensus 97 N~l~~-l~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 97 NKIKD-LSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP- 170 (605)
T ss_dssp SCCCC-CTTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred CCCCC-ChhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-
Confidence 99985 4578899999999999999985 3 4588899999999999999864 568899999999999999986555
Q ss_pred hhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCccc
Q 012103 349 DMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGT 393 (471)
Q Consensus 349 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~ 393 (471)
+..+++|+.|++++|++.+. ..+..+++|+.|+|++|.+.+.
T Consensus 171 -l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp -GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred -hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 88899999999999999964 4688999999999999999854
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.4e-20 Score=192.68 Aligned_cols=260 Identities=19% Similarity=0.193 Sum_probs=136.6
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCCCC-CCCCCceeeceEeCCCCCCEEEEEcCCCCCccccCcccccCCCCCcEEeCC
Q 012103 20 INSDELQILLNLKTSLKDSKSSIFSSWV-SNNHFCNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLG 98 (471)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~-~~~~~c~~~gv~c~~~~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~ 98 (471)
..+.+++++++++.+...+.+..-..|. .....+.|.++.+. ..+++.++|.++.+.. .+.. +.....|+.+.+.
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~~l~L~~n~~~~-~~~~-~l~~l~Ls~~~i~ 204 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVS--TPLTPKIELFANGKDE-ANQA-LLQHKKLSQYSID 204 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceec--CCccceEEeeCCCCCc-chhh-HhhcCccCccccc
Confidence 3456889999999887554445555674 34455778888776 4779999999988873 3433 3233333333322
Q ss_pred -----CCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCC
Q 012103 99 -----FNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNP 173 (471)
Q Consensus 99 -----~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 173 (471)
.|.+. ..+..+..++.|+.|+|++|.+...++.+.++++|++|+|++|.++ .+| ..+.++++|++|+|++|.
T Consensus 205 ~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp-~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 205 EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELP-AEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp ------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCC-GGGGGGTTCCEEECTTSC
T ss_pred Ccccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccC-hhhhCCCCCCEEeCcCCc
Confidence 22232 3467789999999999999999966557779999999999999999 666 788999999999999999
Q ss_pred CCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCC-CCeEeeccccccccCC
Q 012103 174 FDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVK-LWRLELYNNQLSGKLP 252 (471)
Q Consensus 174 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~L~l~~n~l~~~~~ 252 (471)
++ .+|..+..+++|++|++++|.++ .+|..|..+++|+.|+|++|.+++.+|..+..... ...+++.+|.+++.+|
T Consensus 282 l~--~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 282 LT--SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp CS--SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CC--ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 94 67999999999999999999998 78888999999999999999999888887765422 2347889999988777
Q ss_pred ccccCCCCCCEEeCCCC--------cCccccc-cCCCCCCCCEEEccCCcCc
Q 012103 253 VGLRNLTNLANFDASTN--------FLEGDLS-EVRFLTNLVTLQLFKNQFS 295 (471)
Q Consensus 253 ~~l~~l~~L~~L~l~~n--------~~~~~~~-~~~~~~~L~~L~l~~n~l~ 295 (471)
.. |+.|+++.| .+.+..+ .+..+..+....+++|.+.
T Consensus 359 ~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 359 HE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp CC-----------------------------------------------CCC
T ss_pred cc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 54 455566655 1222211 2334445555666666654
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.5e-18 Score=162.27 Aligned_cols=177 Identities=20% Similarity=0.118 Sum_probs=145.7
Q ss_pred CCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc-cCC-CCCCCCEEEccCCcCccccchhccCCCCCCEEEcc
Q 012103 237 LWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVR-FLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLY 314 (471)
Q Consensus 237 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~-~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~ 314 (471)
-+.++++++.++ .+|..+. +.++.|++++|.+++..+ .+. .+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 367888888887 4665543 468999999999988766 565 88999999999999997777888999999999999
Q ss_pred cCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhh---hcCCCCcEEEccCCcCc
Q 012103 315 TNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATY---ANCLTLQRFRVSNNSLK 391 (471)
Q Consensus 315 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L~L~~n~~~ 391 (471)
+|.+.+..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..| ..+++|+.|+|++|+++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999987767778889999999999999987778888899999999999999986544445 56899999999999999
Q ss_pred ccccccccCCCC--CCEeecccCcccc
Q 012103 392 GTVPAGIWGLPE--VNIIDIALNQIEG 416 (471)
Q Consensus 392 ~~~~~~~~~~~~--L~~L~ls~n~~~~ 416 (471)
+..+..+..++. ++.|++++|++..
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ccCHHHhhhccHhhcceEEecCCCccC
Confidence 555566777776 4889999998874
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.6e-18 Score=148.11 Aligned_cols=150 Identities=13% Similarity=0.202 Sum_probs=86.3
Q ss_pred CCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeec
Q 012103 282 TNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLM 361 (471)
Q Consensus 282 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l 361 (471)
++|++|++++|.++ .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..|..+..+++|+.|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 44555555555554 333 3455555555555555443 1224555566666666666665555555566666666666
Q ss_pred cCCccccccchhhhcCCCCcEEEccCCc-CcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCc
Q 012103 362 LQNKFTGEIPATYANCLTLQRFRVSNNS-LKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 362 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 439 (471)
++|.+++..+..+..+++|++|++++|+ ++ .+| .+..+++|+.|++++|++++. + .+..+++|+.|++++|++.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 6666665555666666666666666666 44 444 466666677777777766652 2 5666677777777777665
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.8e-18 Score=153.43 Aligned_cols=170 Identities=16% Similarity=0.219 Sum_probs=120.6
Q ss_pred CCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEec
Q 012103 258 LTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDV 337 (471)
Q Consensus 258 l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 337 (471)
+.++..++++++.+.+.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 445556667777766443 4566778888888888877 344 56777888888888888875433 777888888888
Q ss_pred cCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccc
Q 012103 338 SENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGP 417 (471)
Q Consensus 338 ~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~ 417 (471)
++|.+++ +|.... ++|+.|++++|++++. ..+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++++.
T Consensus 93 ~~N~l~~-l~~~~~--~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKN-LNGIPS--ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSC-CTTCCC--SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCC-cCcccc--CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch
Confidence 8888773 443222 7788888888877753 347777788888888888774 33 567777788888888877765
Q ss_pred cchhhhccCCCCeeeCCCCcCccc
Q 012103 418 ITKDIENAKALNLLFAEYNRLSGE 441 (471)
Q Consensus 418 ~~~~~~~l~~L~~L~l~~n~l~~~ 441 (471)
..+..+++|+.|++++|++.+.
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECC
T ss_pred --HHhccCCCCCEEeCCCCcccCC
Confidence 5667777778888888777744
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-17 Score=143.74 Aligned_cols=132 Identities=16% Similarity=0.207 Sum_probs=93.2
Q ss_pred CEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCch-hhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccC
Q 012103 309 VNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPP-DMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSN 387 (471)
Q Consensus 309 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 387 (471)
+++++++|.++ .+|..+.. ++++|++++|.+++..+. .+..+++|+.|++++|.+++..|..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56777777775 56654432 677777777777644433 366777777777777777776677777777777777777
Q ss_pred CcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccch
Q 012103 388 NSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELP 443 (471)
Q Consensus 388 n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 443 (471)
|++++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|.+.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 77776666667777777777777777777777777777777777777777765544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-19 Score=183.90 Aligned_cols=195 Identities=18% Similarity=0.138 Sum_probs=97.8
Q ss_pred cCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCc-------------CccccchhccCCCCCCEEE-cccCcCccc
Q 012103 256 RNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQ-------------FSGEVPAELGKFKKLVNLS-LYTNKLTGA 321 (471)
Q Consensus 256 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~-------------l~~~~~~~l~~~~~L~~L~-L~~n~l~~~ 321 (471)
...++|+.|++++|.+...+..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~- 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD- 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH-
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch-
Confidence 34566666666666665443355556666666665543 3344445555555555555 33333221
Q ss_pred Cch------hhc--CCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCccc
Q 012103 322 LPQ------ELG--SWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGT 393 (471)
Q Consensus 322 ~~~------~~~--~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~ 393 (471)
++. .+. ....|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|+.|++++|.+++
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence 000 000 00135555555555552 443 555555555555555555 445555555555555555555553
Q ss_pred ccccccCCCCCCEeecccCcccccc-chhhhccCCCCeeeCCCCcCcccchh---hhhcCCCCCEEe
Q 012103 394 VPAGIWGLPEVNIIDIALNQIEGPI-TKDIENAKALNLLFAEYNRLSGELPE---EISKATSLVVIK 456 (471)
Q Consensus 394 ~~~~~~~~~~L~~L~ls~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~---~l~~l~~L~~L~ 456 (471)
+| .+..+++|+.|++++|++++.. |..+..+++|+.|++++|++++..|. .+..+++|+.|+
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 44 4555555555555555555544 55555555555555555555543221 122345555554
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.70 E-value=4e-17 Score=138.84 Aligned_cols=137 Identities=12% Similarity=0.091 Sum_probs=88.9
Q ss_pred CCCCEEeccCCccc-ccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEee
Q 012103 330 AEFDFIDVSENLLT-GPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIID 408 (471)
Q Consensus 330 ~~L~~L~L~~n~l~-~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ 408 (471)
++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|++.+.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45666666666655 45555555566666666666666543 4556666677777777777655666565667777777
Q ss_pred cccCcccccc-chhhhccCCCCeeeCCCCcCcccch---hhhhcCCCCCEEeccCCcCcccCCCC
Q 012103 409 IALNQIEGPI-TKDIENAKALNLLFAEYNRLSGELP---EEISKATSLVVIKLNNNQLTGKIPAS 469 (471)
Q Consensus 409 ls~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~L~l~~n~~sg~ip~~ 469 (471)
+++|++++.. +..+..+++|+.|++++|++++..+ ..+..+++|+.|++++|.+. .+|+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 7777776532 2566677777777777777774444 36777777888888887777 66654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.9e-19 Score=180.97 Aligned_cols=182 Identities=18% Similarity=0.222 Sum_probs=125.3
Q ss_pred CCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCc-------------CcccCchhhcCCCCCCEEe-ccCCcccc
Q 012103 279 RFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNK-------------LTGALPQELGSWAEFDFID-VSENLLTG 344 (471)
Q Consensus 279 ~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~-------------l~~~~~~~~~~~~~L~~L~-L~~n~l~~ 344 (471)
...++|+.|++++|.+. .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 45677777778877776 667777777777777776654 4455566666666677776 4444332
Q ss_pred cCch------hhc--CCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCcccc
Q 012103 345 PIPP------DMC--KRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEG 416 (471)
Q Consensus 345 ~~p~------~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~ 416 (471)
.++. .+. ....|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 1111 000 01247778888877774 555 777777888888888777 677777777788888888887776
Q ss_pred ccchhhhccCCCCeeeCCCCcCcccc-hhhhhcCCCCCEEeccCCcCcccCC
Q 012103 417 PITKDIENAKALNLLFAEYNRLSGEL-PEEISKATSLVVIKLNNNQLTGKIP 467 (471)
Q Consensus 417 ~~~~~~~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~l~~n~~sg~ip 467 (471)
+| .+.++++|+.|++++|++++.. |..+..+++|+.|+|++|++++..|
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 45 6777778888888888887665 7777778888888888888775544
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-17 Score=150.75 Aligned_cols=169 Identities=17% Similarity=0.203 Sum_probs=108.8
Q ss_pred CCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEc
Q 012103 210 LTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQL 289 (471)
Q Consensus 210 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l 289 (471)
+.++..++++++.+++ ++ .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 18 l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence 3456666677777663 33 4666777777777777776 344 56677777777777777765544 666777777777
Q ss_pred cCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccc
Q 012103 290 FKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGE 369 (471)
Q Consensus 290 ~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~ 369 (471)
++|.+++ ++.. .. ++|++|++++|.+++ ++ .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++++.
T Consensus 93 ~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch
Confidence 7777764 3322 22 667777777777764 22 46666677777777777663 33 456666677777777666644
Q ss_pred cchhhhcCCCCcEEEccCCcCcc
Q 012103 370 IPATYANCLTLQRFRVSNNSLKG 392 (471)
Q Consensus 370 ~~~~~~~~~~L~~L~L~~n~~~~ 392 (471)
..+..+++|+.|++++|++.+
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEEC
T ss_pred --HHhccCCCCCEEeCCCCcccC
Confidence 456666666666666666663
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.4e-18 Score=175.10 Aligned_cols=178 Identities=21% Similarity=0.211 Sum_probs=81.6
Q ss_pred cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCC
Q 012103 277 EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTM 356 (471)
Q Consensus 277 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L 356 (471)
.+..++.|+.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..+++|
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 295 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL 295 (727)
T ss_dssp ---CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred hhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence 4445555666666666655 44544555566666666666665 55555566666666666666665 556666666666
Q ss_pred ceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCC-CCEeecccCccccccchhhhccCCCCeeeCCC
Q 012103 357 RDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPE-VNIIDIALNQIEGPITKDIENAKALNLLFAEY 435 (471)
Q Consensus 357 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~-L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~ 435 (471)
+.|++++|.++ .+|..|..+++|+.|+|++|.+++.+|..+..... +..+++++|.+++.+|.. |+.|++++
T Consensus 296 ~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~ 368 (727)
T 4b8c_D 296 KYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINT 368 (727)
T ss_dssp SEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--------------
T ss_pred CEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeec
Confidence 66666666655 45555666666666666666666555554433211 123556666666655532 33344444
Q ss_pred C--------cCcccchhhhhcCCCCCEEeccCCcCcc
Q 012103 436 N--------RLSGELPEEISKATSLVVIKLNNNQLTG 464 (471)
Q Consensus 436 n--------~l~~~~p~~l~~l~~L~~L~l~~n~~sg 464 (471)
| .+.+..+..+..+..+....+++|.+.+
T Consensus 369 n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 369 DGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp ---------------------------------CCCG
T ss_pred ccccccccCCccccccchhhcccccceeeeecccccc
Confidence 4 2333333334445555556666666553
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-17 Score=155.92 Aligned_cols=103 Identities=12% Similarity=0.124 Sum_probs=68.0
Q ss_pred CCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCc-EEEccCCcCcccccccccCCCCCCEe
Q 012103 329 WAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQ-RFRVSNNSLKGTVPAGIWGLPEVNII 407 (471)
Q Consensus 329 ~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~-~L~L~~n~~~~~~~~~~~~~~~L~~L 407 (471)
+++|+.+++++|.++..-+..+..+.+|+.+++.+| +...-...|.+|++|+ .+++.+ .++..-+.+|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 566666777666665333345666667777777666 5545555677777777 777776 5654445667777777777
Q ss_pred ecccCccccccchhhhccCCCCeeeC
Q 012103 408 DIALNQIEGPITKDIENAKALNLLFA 433 (471)
Q Consensus 408 ~ls~n~~~~~~~~~~~~l~~L~~L~l 433 (471)
++++|++....+..|.++++|+.++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 77777777666667777777777653
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-16 Score=132.25 Aligned_cols=128 Identities=11% Similarity=0.086 Sum_probs=79.7
Q ss_pred CCCCEEeccCCccc-ccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEee
Q 012103 330 AEFDFIDVSENLLT-GPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIID 408 (471)
Q Consensus 330 ~~L~~L~L~~n~l~-~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ 408 (471)
++++.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34555555555555 45555555556666666666655543 4555666666666666666655666555566677777
Q ss_pred cccCccccc-cchhhhccCCCCeeeCCCCcCcccch---hhhhcCCCCCEEeccC
Q 012103 409 IALNQIEGP-ITKDIENAKALNLLFAEYNRLSGELP---EEISKATSLVVIKLNN 459 (471)
Q Consensus 409 ls~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~L~l~~ 459 (471)
+++|++++. .+..+..+++|+.|++++|++++..+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 777766653 33566677777777777777765544 4667777777777653
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-16 Score=133.77 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=76.0
Q ss_pred CCCCEEEcccCcCc-ccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEE
Q 012103 306 KKLVNLSLYTNKLT-GALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFR 384 (471)
Q Consensus 306 ~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 384 (471)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555554 34444444555555555555555432 3445555566666666665554555555566666666
Q ss_pred ccCCcCcccc-cccccCCCCCCEeecccCccccccc---hhhhccCCCCeeeCCCCcCc
Q 012103 385 VSNNSLKGTV-PAGIWGLPEVNIIDIALNQIEGPIT---KDIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 385 L~~n~~~~~~-~~~~~~~~~L~~L~ls~n~~~~~~~---~~~~~l~~L~~L~l~~n~l~ 439 (471)
+++|.+++.. +..+..+++|+.|++++|++++..+ ..+..+++|+.|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6666666321 1456666666777777776665444 35666677777777777665
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.66 E-value=4.9e-16 Score=135.01 Aligned_cols=171 Identities=15% Similarity=0.188 Sum_probs=135.7
Q ss_pred CEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCch-hhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccC
Q 012103 285 VTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQ-ELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQ 363 (471)
Q Consensus 285 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~ 363 (471)
+.++++++.++ .+|..+. .++++|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|+.|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 78999999997 6776554 3899999999999866554 488999999999999999988899999999999999999
Q ss_pred CccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccch-hhhccCCCCeeeCCCCcCcccc
Q 012103 364 NKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITK-DIENAKALNLLFAEYNRLSGEL 442 (471)
Q Consensus 364 n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~ 442 (471)
|++++..+..|..+++|++|++++|++++..|..+..+++|++|++++|++.+..+. ++.. .++...+..+......
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~~ 165 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCGA 165 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCCCCCCCCCC
Confidence 999988888899999999999999999988899999999999999999999976542 1111 1222234444444445
Q ss_pred hhhhhcCCCCCEEeccCCcCc
Q 012103 443 PEEISKATSLVVIKLNNNQLT 463 (471)
Q Consensus 443 p~~l~~l~~L~~L~l~~n~~s 463 (471)
|..+. .....++..+.+.
T Consensus 166 P~~l~---~~~l~~l~~~~~~ 183 (192)
T 1w8a_A 166 PSKVR---DVQIKDLPHSEFK 183 (192)
T ss_dssp STTTT---TSBGGGSCTTTCC
T ss_pred ChHHc---CCChhhCcHhhcC
Confidence 55443 3444556666664
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-16 Score=149.94 Aligned_cols=283 Identities=11% Similarity=0.022 Sum_probs=174.5
Q ss_pred CCCCcEEEccCCCCCCCCCCccccC-CCCCCEEEcccccCc--ccCCccccCCCCCcEEEcccCcCCCcCCccccC----
Q 012103 161 MTNLVSLSVGDNPFDPTPFPDQVVK-LNKLNWLYLTNCSID--GQIPVEIGNLTELINLELSDNNISGEIPSEIGN---- 233 (471)
Q Consensus 161 l~~L~~L~l~~n~~~~~~~~~~l~~-l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~---- 233 (471)
+.+++.|.++++-- ... ...+.. +++|++|++++|++. ...+..+ +.++.+.+..+.+ .+..|.+
T Consensus 24 ~~~l~~L~l~g~i~-~~~-~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I---~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGKLN-AED-FRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFV---PAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEEEC-HHH-HHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEE---CTTTTEEEETT
T ss_pred hCceeEEEEecccc-HHH-HHHHHHhhccCeEEecCcceeEEecCccccc---ccccccccccccc---CHHHhcccccc
Confidence 45677777765411 110 122223 667777777777766 2211111 1233333333322 1233444
Q ss_pred ----CCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcC----ccccchhccC
Q 012103 234 ----LVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQF----SGEVPAELGK 304 (471)
Q Consensus 234 ----l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l----~~~~~~~l~~ 304 (471)
+.+|+++++.. .++...+..|.++++|+.+++.+|.+....+ .+..+.++..+....+.. .......+..
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 77777777776 6665555667777777777777776654444 556555555555444221 1111223444
Q ss_pred CCCCC-EEEcccCcCcccCchhh----cCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCC
Q 012103 305 FKKLV-NLSLYTNKLTGALPQEL----GSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLT 379 (471)
Q Consensus 305 ~~~L~-~L~L~~n~l~~~~~~~~----~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 379 (471)
+..|+ .+.+.... .++..+ ....++..+.+.++-...........+++|+.+++++|+++......|.+|++
T Consensus 175 ~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~ 251 (329)
T 3sb4_A 175 GEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY 251 (329)
T ss_dssp SCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTT
T ss_pred ccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCC
Confidence 45555 33333211 111111 12345566666654322111111123789999999999998777778999999
Q ss_pred CcEEEccCCcCcccccccccCCCCCC-EeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEec
Q 012103 380 LQRFRVSNNSLKGTVPAGIWGLPEVN-IIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKL 457 (471)
Q Consensus 380 L~~L~L~~n~~~~~~~~~~~~~~~L~-~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 457 (471)
|+.+++.+| ++..-+.+|.++++|+ .+++.+ .++...+..|.+|++|+.+++++|++...-+.+|..+++|+.|..
T Consensus 252 L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 252 LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999999998 7755567799999999 999998 777777789999999999999999999777788999999998863
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.6e-16 Score=133.48 Aligned_cols=127 Identities=17% Similarity=0.214 Sum_probs=85.3
Q ss_pred CEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCC
Q 012103 309 VNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNN 388 (471)
Q Consensus 309 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n 388 (471)
+.++++++.++ .+|..+. +++++|++++|.++ .+|..+..+++|+.|++++|.+++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46677777766 4554432 46777777777776 66666666777777777777777666666677777777777777
Q ss_pred cCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCc
Q 012103 389 SLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 389 ~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 439 (471)
++++..|..|..+++|++|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 777555556666777777777777776555555666677777777777664
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.2e-16 Score=132.21 Aligned_cols=133 Identities=14% Similarity=0.131 Sum_probs=92.4
Q ss_pred CCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccC
Q 012103 308 LVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSN 387 (471)
Q Consensus 308 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 387 (471)
.+.++++++.++ .+|..+ .+++++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 466777777776 445433 25777888887777754444566777777777777777765555667777777777777
Q ss_pred CcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccch
Q 012103 388 NSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELP 443 (471)
Q Consensus 388 n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 443 (471)
|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 77775555556777777777777777776555556677777777777777776554
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.65 E-value=6.3e-16 Score=128.56 Aligned_cols=127 Identities=17% Similarity=0.231 Sum_probs=81.2
Q ss_pred CCCCEEEcccCcCc-ccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEE
Q 012103 306 KKLVNLSLYTNKLT-GALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFR 384 (471)
Q Consensus 306 ~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 384 (471)
++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45566666666655 45555555566666666666666533 4455566666666666666655666666677777777
Q ss_pred ccCCcCccc-ccccccCCCCCCEeecccCccccccc---hhhhccCCCCeeeCC
Q 012103 385 VSNNSLKGT-VPAGIWGLPEVNIIDIALNQIEGPIT---KDIENAKALNLLFAE 434 (471)
Q Consensus 385 L~~n~~~~~-~~~~~~~~~~L~~L~ls~n~~~~~~~---~~~~~l~~L~~L~l~ 434 (471)
+++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777777642 23566777777777777777776554 466777777777765
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.7e-14 Score=135.49 Aligned_cols=332 Identities=10% Similarity=0.047 Sum_probs=178.1
Q ss_pred ccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEccCCCCcccCCcccc
Q 012103 80 TLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSL 158 (471)
Q Consensus 80 ~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~ 158 (471)
.++..+|.++.+|+.+.+.. .++..-..+|.+|++|+.+++.++ ++.... .+.++++|+.+.+..+ +..... ..|
T Consensus 61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~-~aF 136 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV-EAF 136 (394)
T ss_dssp EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT-TTT
T ss_pred EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc-eee
Confidence 34555577777777777753 344333456777777777777544 333333 5555566655544322 111111 233
Q ss_pred cCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCC
Q 012103 159 GNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLW 238 (471)
Q Consensus 159 ~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 238 (471)
.++..++...... ........|.++++|+.+.+..+. .......|.++.+|+
T Consensus 137 ~~~~~~~~~~~~~---------------------------~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~ 188 (394)
T 4fs7_A 137 KGCDFKEITIPEG---------------------------VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLK 188 (394)
T ss_dssp TTCCCSEEECCTT---------------------------CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCC
T ss_pred ecccccccccCcc---------------------------ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCce
Confidence 3332222111111 111122345555556655554432 212333455555666
Q ss_pred eEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcC
Q 012103 239 RLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKL 318 (471)
Q Consensus 239 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l 318 (471)
.+.+..+ ++......+.++..|+.+.+..+... .........+|+.+.+.... +......+..+..++.+.+..+..
T Consensus 189 ~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~ 265 (394)
T 4fs7_A 189 SIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKL 265 (394)
T ss_dssp BCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTC
T ss_pred EEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcc
Confidence 6655543 33233344555666665555444322 11122233566666665432 223334556666777777765543
Q ss_pred cccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccc
Q 012103 319 TGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGI 398 (471)
Q Consensus 319 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~ 398 (471)
. .....+..+..++.+....+.+. ...+..+.+|+.+.+..+ +...-...|.+|.+|+.+++.++ ++..-..+|
T Consensus 266 ~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF 339 (394)
T 4fs7_A 266 R-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSF 339 (394)
T ss_dssp E-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTT
T ss_pred e-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhc
Confidence 3 33445566667777766655332 124556677777777654 44344556777788888877643 553334567
Q ss_pred cCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEE
Q 012103 399 WGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVI 455 (471)
Q Consensus 399 ~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 455 (471)
.++++|+.+.+..+ +.......|.+|++|+.+.+..+ +. .+..+|..+++|+.+
T Consensus 340 ~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 340 RGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred cCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 77788888887765 55555567778888888887654 33 344567777777665
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.4e-15 Score=127.96 Aligned_cols=128 Identities=16% Similarity=0.280 Sum_probs=108.6
Q ss_pred CEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCC
Q 012103 285 VTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQN 364 (471)
Q Consensus 285 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n 364 (471)
+.++++++.++ .+|..+. ++|++|++++|.++ .+|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 67888898888 5665543 58999999999998 67788888999999999999998766677888999999999999
Q ss_pred ccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCcccc
Q 012103 365 KFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEG 416 (471)
Q Consensus 365 ~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~ 416 (471)
++++..+..|..+++|+.|++++|.++...+..+..+++|+.|++++|++..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9998888889999999999999999995555568889999999999998865
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.6e-15 Score=125.13 Aligned_cols=133 Identities=15% Similarity=0.138 Sum_probs=104.6
Q ss_pred CCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccC
Q 012103 284 LVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQ 363 (471)
Q Consensus 284 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~ 363 (471)
.+.++++++.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 467888888887 4554433 6888999999888866566678888899999999888855555567888899999999
Q ss_pred CccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccc
Q 012103 364 NKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPIT 419 (471)
Q Consensus 364 n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~ 419 (471)
|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 98887777777888889999999998885555556778889999999998887654
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-17 Score=143.96 Aligned_cols=153 Identities=19% Similarity=0.230 Sum_probs=107.5
Q ss_pred CCCCCCEEEcccCcCcccCch------hhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcC
Q 012103 304 KFKKLVNLSLYTNKLTGALPQ------ELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANC 377 (471)
Q Consensus 304 ~~~~L~~L~L~~n~l~~~~~~------~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 377 (471)
..+.++.++++.+.+.|.+|. .+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+..+
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence 334555555555555555544 66777777777777777764 66 6667777777777777777 566666667
Q ss_pred CCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccc-hhhhccCCCCeeeCCCCcCcccchhh----------h
Q 012103 378 LTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPIT-KDIENAKALNLLFAEYNRLSGELPEE----------I 446 (471)
Q Consensus 378 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~----------l 446 (471)
++|++|++++|++++ +| .+..+++|++|++++|++++..+ ..+..+++|+.|++++|++.+.+|.. +
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 778888888888774 44 56677788888888888875332 46777888888888888887665542 7
Q ss_pred hcCCCCCEEeccCCcCc
Q 012103 447 SKATSLVVIKLNNNQLT 463 (471)
Q Consensus 447 ~~l~~L~~L~l~~n~~s 463 (471)
..+++|+.|| +|+++
T Consensus 171 ~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 171 KRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHCSSCSEEC--CGGGT
T ss_pred HhCCCcEEEC--CcccC
Confidence 7788888886 66665
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-13 Score=132.86 Aligned_cols=262 Identities=7% Similarity=0.006 Sum_probs=123.6
Q ss_pred CCCCcEEEccCCCCCCCCC-CccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCe
Q 012103 161 MTNLVSLSVGDNPFDPTPF-PDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWR 239 (471)
Q Consensus 161 l~~L~~L~l~~n~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 239 (471)
+..++.+.+..+ + ..+ ...+..+ +|+.+.+..+ +......+|.++ +|+.+.+.. .+....+..|.+|.+|+.
T Consensus 112 ~~~l~~i~ip~~-i--~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPNS-V--KSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCTT-C--CEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred cCCccEEEECCc-c--CEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 355666665543 1 111 2233332 5666666554 443333445443 566666654 444344455666666666
Q ss_pred EeeccccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcC
Q 012103 240 LELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKL 318 (471)
Q Consensus 240 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l 318 (471)
+++..|.++......|. ..+|+.+.+.++ +..... .+..+++|+.+++..+ ++......+.. .+|+.+.+ .+.+
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGV 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTC
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCc
Confidence 66666666533333343 456666666533 332222 5555666666666543 33233334444 45555555 2334
Q ss_pred cccCchhhcCCCCCCEEeccCCccc-----ccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCccc
Q 012103 319 TGALPQELGSWAEFDFIDVSENLLT-----GPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGT 393 (471)
Q Consensus 319 ~~~~~~~~~~~~~L~~L~L~~n~l~-----~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~ 393 (471)
+......+.++++|+.+++.++.+. ..-+..+..|++|+.+.+.+ .+...-...|.+|++|+.+.+..+ ++..
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I 337 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQI 337 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence 3333444555555555555554432 11223344455555555542 233333344555555555555332 3322
Q ss_pred ccccccCCCCCCEeecccCccccccchhhhccC-CCCeeeCCCCc
Q 012103 394 VPAGIWGLPEVNIIDIALNQIEGPITKDIENAK-ALNLLFAEYNR 437 (471)
Q Consensus 394 ~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~-~L~~L~l~~n~ 437 (471)
-..+|.++ +|+.+++++|......+..|.+++ .++.|++..+.
T Consensus 338 ~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred cHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 23344444 555555555544433333444442 34444444443
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.58 E-value=5.5e-15 Score=126.50 Aligned_cols=133 Identities=17% Similarity=0.135 Sum_probs=80.4
Q ss_pred ccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCc
Q 012103 302 LGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQ 381 (471)
Q Consensus 302 l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 381 (471)
+..+++|++|++++|.++ .++......++|++|++++|.+++. ..+..+++|+.|++++|.+++..+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 345567777777777776 3343222233677777777776642 4556666667777777766644444446666666
Q ss_pred EEEccCCcCcccccc--cccCCCCCCEeecccCccccccch----hhhccCCCCeeeCCCCcCc
Q 012103 382 RFRVSNNSLKGTVPA--GIWGLPEVNIIDIALNQIEGPITK----DIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 382 ~L~L~~n~~~~~~~~--~~~~~~~L~~L~ls~n~~~~~~~~----~~~~l~~L~~L~l~~n~l~ 439 (471)
.|++++|+++ .+|. .+..+++|+.|++++|++.. +|. .+..+++|+.|++++|.+.
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 6666666665 4444 55666666666666666653 333 2556666666666666554
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.5e-13 Score=129.47 Aligned_cols=321 Identities=9% Similarity=-0.009 Sum_probs=168.2
Q ss_pred CCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEE
Q 012103 65 SFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLY 143 (471)
Q Consensus 65 ~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~ 143 (471)
..++++.+.. .++ .++..+|.++++|+.+++..+ ++..-..+|.++.+|+.+.+..+ +..... .+.++..++...
T Consensus 71 ~~L~~i~lp~-~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~ 146 (394)
T 4fs7_A 71 RKVTEIKIPS-TVR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITI 146 (394)
T ss_dssp TTEEEEECCT-TCC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEEC
T ss_pred CCceEEEeCC-Ccc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccccccc
Confidence 4688999964 465 777778999999999999754 54344567899999999887654 333333 565555444333
Q ss_pred ccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcC
Q 012103 144 LNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNI 223 (471)
Q Consensus 144 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 223 (471)
....... .. ..|.++++|+.+.+.++.. .--...+..+.+|+.+.+..+ +.......|.++..|+.+.+..+..
T Consensus 147 ~~~~~~i--~~-~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~ 220 (394)
T 4fs7_A 147 PEGVTVI--GD-EAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY 220 (394)
T ss_dssp CTTCCEE--CT-TTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC
T ss_pred Ccccccc--ch-hhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce
Confidence 3322221 12 5678888888888876532 111345566777777777654 3323344566666666666554432
Q ss_pred CCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhcc
Q 012103 224 SGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELG 303 (471)
Q Consensus 224 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 303 (471)
. +.........|+.+.+.... +......+..+..++.+.+..+...-....+..+..++.+......+. ...
T Consensus 221 ~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~---~~~-- 292 (394)
T 4fs7_A 221 Y--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP---EKT-- 292 (394)
T ss_dssp E--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC---TTT--
T ss_pred E--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcceeeccccccccccceeccCceeec---ccc--
Confidence 1 22223334556665554321 212233344555555555544433212223444444444444333221 122
Q ss_pred CCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEE
Q 012103 304 KFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRF 383 (471)
Q Consensus 304 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 383 (471)
+..+.+|+.+.+.++ ++..-..++..+.+|+.+++..+ ++..-...|.+|.+|+.+
T Consensus 293 ----------------------F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i 348 (394)
T 4fs7_A 293 ----------------------FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNI 348 (394)
T ss_dssp ----------------------TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEE
T ss_pred ----------------------ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEE
Confidence 334444555544433 22111233444555555555432 332334455566666666
Q ss_pred EccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCe
Q 012103 384 RVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNL 430 (471)
Q Consensus 384 ~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~ 430 (471)
++..+ ++..-..+|.++++|+.+++..+ +. .+...|.++++|+.
T Consensus 349 ~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 349 NFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKW 392 (394)
T ss_dssp CCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred EECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcE
Confidence 66544 44223345566666666666543 21 12344555555554
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.55 E-value=6.1e-13 Score=128.79 Aligned_cols=237 Identities=11% Similarity=0.071 Sum_probs=96.6
Q ss_pred CCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEcc
Q 012103 212 ELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLF 290 (471)
Q Consensus 212 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~ 290 (471)
+|+.+.+..+ +.......|.+ .+|+.+.+.. .+.......|.++++|+.+++.+|.+..... .+. +.+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 3444444433 33222233333 2344444443 3332333444444555555554444443333 222 3444555444
Q ss_pred CCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccc---
Q 012103 291 KNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFT--- 367 (471)
Q Consensus 291 ~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~--- 367 (471)
.+ +.......+.++++|+.+++..+ ++......+.+ .+|+.+.+.+ .++..-+.++..|++|+.+.+.++.+.
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDP 287 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence 22 33233334444445555544432 22122222333 3444444422 222122233444445555554444332
Q ss_pred --cccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhh
Q 012103 368 --GEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEE 445 (471)
Q Consensus 368 --~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~ 445 (471)
......|.+|++|+.+++. +.++..-..+|.++++|+.+.+..+ ++......|.++ +|+.+.+++|.+....+..
T Consensus 288 ~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~ 364 (401)
T 4fdw_A 288 EAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKV 364 (401)
T ss_dssp TCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSS
T ss_pred ccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccccc
Confidence 2223344445555555444 2233222334444445555554332 333333444444 4555555554444333333
Q ss_pred hhcCC-CCCEEeccC
Q 012103 446 ISKAT-SLVVIKLNN 459 (471)
Q Consensus 446 l~~l~-~L~~L~l~~ 459 (471)
|..++ .++.|.+-.
T Consensus 365 F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 365 WYGFPDDITVIRVPA 379 (401)
T ss_dssp CCCSCTTCCEEEECG
T ss_pred ccCCCCCccEEEeCH
Confidence 33332 344444433
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-14 Score=122.88 Aligned_cols=130 Identities=14% Similarity=0.101 Sum_probs=66.3
Q ss_pred CCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEe
Q 012103 328 SWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNII 407 (471)
Q Consensus 328 ~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L 407 (471)
.+.+|+.|++++|.++ .+|......++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 3445555555555555 3333222222555555555555532 345555555555555555553322333555555555
Q ss_pred ecccCccccccch--hhhccCCCCeeeCCCCcCcccchhh----hhcCCCCCEEeccCCcC
Q 012103 408 DIALNQIEGPITK--DIENAKALNLLFAEYNRLSGELPEE----ISKATSLVVIKLNNNQL 462 (471)
Q Consensus 408 ~ls~n~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~----l~~l~~L~~L~l~~n~~ 462 (471)
++++|+++. +|. .+..+++|+.|++++|++. .+|.. +..+++|+.|++++|.+
T Consensus 94 ~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 94 ILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp ECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 555555542 333 4555555555555555555 33432 55555555555555544
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.51 E-value=3.4e-16 Score=136.82 Aligned_cols=150 Identities=18% Similarity=0.229 Sum_probs=113.4
Q ss_pred CCCEEEccCCcCccccc------hhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCC
Q 012103 283 NLVTLQLFKNQFSGEVP------AELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTM 356 (471)
Q Consensus 283 ~L~~L~l~~n~l~~~~~------~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L 356 (471)
.++.++++.+.+.+..| ..+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 33444444444444433 377888888889998888885 66 7778888999999998887 677777777889
Q ss_pred ceeeccCCccccccchhhhcCCCCcEEEccCCcCccccc-ccccCCCCCCEeecccCccccccch----------hhhcc
Q 012103 357 RDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVP-AGIWGLPEVNIIDIALNQIEGPITK----------DIENA 425 (471)
Q Consensus 357 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~~~~L~~L~ls~n~~~~~~~~----------~~~~l 425 (471)
+.|++++|++++ +| .+..+++|+.|++++|++++..+ ..+..+++|++|++++|++.+..|. .+..+
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l 173 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence 999999998885 44 57788899999999999884322 4678889999999999998876554 37788
Q ss_pred CCCCeeeCCCCcCc
Q 012103 426 KALNLLFAEYNRLS 439 (471)
Q Consensus 426 ~~L~~L~l~~n~l~ 439 (471)
++|+.|+ +|.++
T Consensus 174 ~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 174 PNLKKLD--GMPVD 185 (198)
T ss_dssp SSCSEEC--CGGGT
T ss_pred CCcEEEC--CcccC
Confidence 9999887 66665
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=116.37 Aligned_cols=107 Identities=20% Similarity=0.236 Sum_probs=83.4
Q ss_pred CCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeeccc
Q 012103 332 FDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIAL 411 (471)
Q Consensus 332 L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~ 411 (471)
.+.+++++|.++ .+|..+ .++++.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 467888888887 577655 36788888888888877777788888888888888888865555677888888888888
Q ss_pred CccccccchhhhccCCCCeeeCCCCcCccc
Q 012103 412 NQIEGPITKDIENAKALNLLFAEYNRLSGE 441 (471)
Q Consensus 412 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 441 (471)
|++++..+..+.++++|+.|++++|.+...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 888876666777888888888888877644
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.9e-13 Score=115.31 Aligned_cols=105 Identities=16% Similarity=0.250 Sum_probs=83.0
Q ss_pred CEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccC
Q 012103 333 DFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALN 412 (471)
Q Consensus 333 ~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n 412 (471)
+.+++++|.++ .+|..+. ++|+.|++++|++.+..|..|..+++|+.|+|++|++++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67888888886 7776553 67888888888888777778888888888888888888554555678888888888888
Q ss_pred ccccccchhhhccCCCCeeeCCCCcCcc
Q 012103 413 QIEGPITKDIENAKALNLLFAEYNRLSG 440 (471)
Q Consensus 413 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 440 (471)
++.+..+..+..+++|+.|++++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 8887666667888888888888888774
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-14 Score=136.95 Aligned_cols=96 Identities=16% Similarity=0.215 Sum_probs=47.9
Q ss_pred CCCceeeccCCccccc----cchhhhcCCCCcEEEccCCcCccc----ccccccCCCCCCEeecccCccccc----cchh
Q 012103 354 GTMRDLLMLQNKFTGE----IPATYANCLTLQRFRVSNNSLKGT----VPAGIWGLPEVNIIDIALNQIEGP----ITKD 421 (471)
Q Consensus 354 ~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~ls~n~~~~~----~~~~ 421 (471)
++|+.|++++|.++.. ++..+..+++|++|+|++|.+++. ++..+...++|+.|+|++|.+++. ++..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 4455555555544421 222334455555555555555432 233444455566666666665542 2233
Q ss_pred hhccCCCCeeeCCCCcCcccchhhhhcC
Q 012103 422 IENAKALNLLFAEYNRLSGELPEEISKA 449 (471)
Q Consensus 422 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l 449 (471)
+...++|+.|++++|.|+......+..+
T Consensus 235 L~~~~~L~~L~Ls~N~i~~~g~~~L~~~ 262 (372)
T 3un9_A 235 AREHPSLELLHLYFNELSSEGRQVLRDL 262 (372)
T ss_dssp HHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred HHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence 3445666666666666655444444443
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.42 E-value=7.6e-13 Score=112.28 Aligned_cols=109 Identities=14% Similarity=0.119 Sum_probs=94.3
Q ss_pred CCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEcc
Q 012103 307 KLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVS 386 (471)
Q Consensus 307 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 386 (471)
+.+.+++++|.++ .+|..+ .+++++|++++|.+++..|..+..+++|+.|++++|++++..+..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3578999999998 567655 3789999999999997778889999999999999999997777778999999999999
Q ss_pred CCcCcccccccccCCCCCCEeecccCcccccc
Q 012103 387 NNSLKGTVPAGIWGLPEVNIIDIALNQIEGPI 418 (471)
Q Consensus 387 ~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~ 418 (471)
+|++++..+..+..+++|++|++++|++....
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 99999666667889999999999999998653
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.1e-14 Score=135.04 Aligned_cols=159 Identities=18% Similarity=0.195 Sum_probs=112.8
Q ss_pred CCCCEEEcccCcCcccCchhh----c-CCCCCCEEeccCCcccccCchhh-cCCCCCceeeccCCccccccchhh-----
Q 012103 306 KKLVNLSLYTNKLTGALPQEL----G-SWAEFDFIDVSENLLTGPIPPDM-CKRGTMRDLLMLQNKFTGEIPATY----- 374 (471)
Q Consensus 306 ~~L~~L~L~~n~l~~~~~~~~----~-~~~~L~~L~L~~n~l~~~~p~~~-~~~~~L~~L~l~~n~~~~~~~~~~----- 374 (471)
+.|+.|++++|.++......+ . ...+|++|++++|.++......+ ..+++|+.|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 456666666666654322222 2 22567777777777653322222 224568888888888875444443
Q ss_pred hcCCCCcEEEccCCcCccc----ccccccCCCCCCEeecccCcccccc----chhhhccCCCCeeeCCCCcCccc----c
Q 012103 375 ANCLTLQRFRVSNNSLKGT----VPAGIWGLPEVNIIDIALNQIEGPI----TKDIENAKALNLLFAEYNRLSGE----L 442 (471)
Q Consensus 375 ~~~~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~ls~n~~~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~ 442 (471)
...++|++|+|++|.+++. ++..+...++|++|+|++|.+++.. +..+...++|+.|++++|.|+.. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2468999999999999752 4555678899999999999998643 56677788999999999999863 4
Q ss_pred hhhhhcCCCCCEEeccCCcCcc
Q 012103 443 PEEISKATSLVVIKLNNNQLTG 464 (471)
Q Consensus 443 p~~l~~l~~L~~L~l~~n~~sg 464 (471)
+..+...++|++|+|++|+|++
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHhCCCCCEEeccCCCCCH
Confidence 5566678999999999999974
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=111.65 Aligned_cols=107 Identities=15% Similarity=0.151 Sum_probs=92.0
Q ss_pred CCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccC
Q 012103 308 LVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSN 387 (471)
Q Consensus 308 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 387 (471)
-+.+++++|.++ .+|..+. ++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..|..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 378999999996 6776554 7899999999999977788889999999999999999976666788999999999999
Q ss_pred CcCcccccccccCCCCCCEeecccCccccc
Q 012103 388 NSLKGTVPAGIWGLPEVNIIDIALNQIEGP 417 (471)
Q Consensus 388 n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~ 417 (471)
|++++..+..+..+++|++|++++|++...
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 999965555688999999999999998854
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-10 Score=112.66 Aligned_cols=132 Identities=14% Similarity=0.206 Sum_probs=75.2
Q ss_pred hhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCC
Q 012103 324 QELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPE 403 (471)
Q Consensus 324 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~ 403 (471)
..+..+..|+.+.+.++... .-..++..+.+|+.+.+. +.+...-...|.+|.+|+.+++..+ ++..-..+|.++++
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 34556666666666554332 223345566677777765 3344344456777777777777653 44233456777777
Q ss_pred CCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcC
Q 012103 404 VNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQL 462 (471)
Q Consensus 404 L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~ 462 (471)
|+.+.+..+ ++......|.+|++|+.+.+.++... ...+..+.+|+.+.+..|.+
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 888777554 55455567778888888888777543 24566677788777776654
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.1e-10 Score=110.02 Aligned_cols=333 Identities=10% Similarity=0.063 Sum_probs=167.6
Q ss_pred cCcccccCCC-CCcEEeCCCCCCCccccccccCCCCCCEEeCCCCc---CCccCC-CCCCCCCCCEEEccCCCCcccCCc
Q 012103 81 LPFDSICQLQ-ALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNV---FSGSFP-EISSLNELQHLYLNLSGFSGVFPW 155 (471)
Q Consensus 81 l~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~ 155 (471)
++..+|.+++ .|+.+.+.. .++..-..+|.+|.+|+.+.+..+. ++.... .+.++.+|+.+.+..+ ++....
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~- 130 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS- 130 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT-
T ss_pred cCHhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh-
Confidence 4444566664 477777754 2443445567777777777776553 333333 5566666666655433 222222
Q ss_pred ccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCC
Q 012103 156 MSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLV 235 (471)
Q Consensus 156 ~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 235 (471)
..+.++.+|+.+.+..+.. .--...+..+.+|+.+.+..+ +...-...|. ..+|+.+.+..+-.. .....+.++.
T Consensus 131 ~aF~~c~~L~~i~lp~~~~--~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~ 205 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEGVT--SVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECF 205 (394)
T ss_dssp TTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCT
T ss_pred hhhhhhcccccccccceee--eecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhcc
Confidence 4556666666666654321 111233445555666555433 2211122232 234555555433211 2333444455
Q ss_pred CCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEccc
Q 012103 236 KLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYT 315 (471)
Q Consensus 236 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~ 315 (471)
.++............-...+........ ..........+..+.+... +.......+..+..|+.+.+..
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~ 274 (394)
T 4gt6_A 206 ALSTITSDSESYPAIDNVLYEKSANGDY----------ALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPD 274 (394)
T ss_dssp TCCEEEECCSSSCBSSSCEEEECTTSCE----------EEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCT
T ss_pred ccceecccccccccccceeecccccccc----------cccccccccccceEEcCCc-ceEcccceeeecccccEEeccc
Confidence 5554444333222100000000000000 0001112233444444322 2223345667777788887765
Q ss_pred CcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCccccc
Q 012103 316 NKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVP 395 (471)
Q Consensus 316 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~ 395 (471)
+... .....+.+++.|+.+.+.. .++..-..++..|.+|+.+.+..+ ++..-...|.+|.+|+.+.+..+ ++..-.
T Consensus 275 ~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~ 350 (394)
T 4gt6_A 275 SVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPE 350 (394)
T ss_dssp TCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCG
T ss_pred ccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhH
Confidence 4432 3345667778888888864 343222345667888888888754 44444567888888998888654 553335
Q ss_pred ccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCc
Q 012103 396 AGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 396 ~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 439 (471)
.+|.++++|+.+++.++.... ..+..+.+|+.+.+..+.+.
T Consensus 351 ~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 351 SAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp GGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----------
T ss_pred hHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCEE
Confidence 678888899999888875432 45667788888887766543
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.21 E-value=4e-11 Score=114.21 Aligned_cols=105 Identities=12% Similarity=0.162 Sum_probs=85.4
Q ss_pred CEEeccCC-cccccCchhhcCCCCCceeeccC-CccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecc
Q 012103 333 DFIDVSEN-LLTGPIPPDMCKRGTMRDLLMLQ-NKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIA 410 (471)
Q Consensus 333 ~~L~L~~n-~l~~~~p~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls 410 (471)
..++++++ .++ .+|. +..+++|+.|+|++ |.+.+..+..|..+++|+.|+|++|++++..|..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688887 777 6888 88888889999986 88887777788888889999999998888777788888888899999
Q ss_pred cCccccccchhhhccCCCCeeeCCCCcCcc
Q 012103 411 LNQIEGPITKDIENAKALNLLFAEYNRLSG 440 (471)
Q Consensus 411 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 440 (471)
+|++++..+..+..++ |+.|++.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 8888876666666555 8888888888863
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.18 E-value=3.9e-11 Score=114.32 Aligned_cols=106 Identities=17% Similarity=0.198 Sum_probs=92.5
Q ss_pred CEEEcccC-cCcccCchhhcCCCCCCEEeccC-CcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEcc
Q 012103 309 VNLSLYTN-KLTGALPQELGSWAEFDFIDVSE-NLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVS 386 (471)
Q Consensus 309 ~~L~L~~n-~l~~~~~~~~~~~~~L~~L~L~~-n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 386 (471)
..++++++ .++ .+|. +..+.+|+.|+|++ |.+++..+..+..+++|+.|+|++|++++..|..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45788888 888 5888 99999999999996 99997777889999999999999999999889999999999999999
Q ss_pred CCcCcccccccccCCCCCCEeecccCccccc
Q 012103 387 NNSLKGTVPAGIWGLPEVNIIDIALNQIEGP 417 (471)
Q Consensus 387 ~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~ 417 (471)
+|++++..+..+..++ |+.|++++|++...
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 9999965555555555 99999999999853
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.1e-08 Score=94.46 Aligned_cols=130 Identities=11% Similarity=0.103 Sum_probs=55.5
Q ss_pred cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCC
Q 012103 277 EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTM 356 (471)
Q Consensus 277 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L 356 (471)
.+..+.+++.+.+..+ +.......+..+..|+.+.+..+ ++......+.++..|+.+.+..+ ++..-...+..+.+|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 3344455555555433 22223334444555555555433 32222333444455555555432 221112234444555
Q ss_pred ceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecc
Q 012103 357 RDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIA 410 (471)
Q Consensus 357 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls 410 (471)
+.+.+.++.+...-...|.+|.+|+.+.+..+ ++..-..+|.++++|+.+.+.
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 55555444444333344555555555555332 331222344445555555443
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.7e-10 Score=106.59 Aligned_cols=199 Identities=15% Similarity=0.221 Sum_probs=125.9
Q ss_pred CCCCEEeCCCCcCcc-cc--------ccCCCCCCCCEEEccCCcCc---------cccchhccCCCCCCEEEcccCcCcc
Q 012103 259 TNLANFDASTNFLEG-DL--------SEVRFLTNLVTLQLFKNQFS---------GEVPAELGKFKKLVNLSLYTNKLTG 320 (471)
Q Consensus 259 ~~L~~L~l~~n~~~~-~~--------~~~~~~~~L~~L~l~~n~l~---------~~~~~~l~~~~~L~~L~L~~n~l~~ 320 (471)
..++.|.+....+.+ .. .....+++|+.|.+...... +.+...+..+|+|+.|.+++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 456677777555432 11 12345678999988665321 124455677788999999887311
Q ss_pred cCchhhcCCCCCCEEeccCCcccccCchhhc--CCCCCceeeccC--Cccccc-----cchhh--hcCCCCcEEEccCCc
Q 012103 321 ALPQELGSWAEFDFIDVSENLLTGPIPPDMC--KRGTMRDLLMLQ--NKFTGE-----IPATY--ANCLTLQRFRVSNNS 389 (471)
Q Consensus 321 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~--~~~~L~~L~l~~--n~~~~~-----~~~~~--~~~~~L~~L~L~~n~ 389 (471)
.++. + ..++|+.|++..+.+.......+. .+++|+.|+|+. +...+. +...+ ..+++|+.|++.+|.
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 2232 3 367899999988877644333443 678899888853 221111 11122 247889999998888
Q ss_pred Ccccccccc---cCCCCCCEeecccCccccc----cchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCc
Q 012103 390 LKGTVPAGI---WGLPEVNIIDIALNQIEGP----ITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQ 461 (471)
Q Consensus 390 ~~~~~~~~~---~~~~~L~~L~ls~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 461 (471)
+.+..+..+ ..+++|++|+|+.|.+++. ++..+..+++|+.|++++|.++...-..+...- ...+++++++
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence 875443322 3567889999988888764 334445678889999988888766555555411 4667888776
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.01 E-value=6.8e-10 Score=105.44 Aligned_cols=180 Identities=9% Similarity=0.080 Sum_probs=123.2
Q ss_pred cccCCCCCCEEeCCCCcCc---------cccc-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCc
Q 012103 254 GLRNLTNLANFDASTNFLE---------GDLS-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALP 323 (471)
Q Consensus 254 ~l~~l~~L~~L~l~~n~~~---------~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~ 323 (471)
....+++|+.|.+...... +.+. .+..+|+|+.|+++++.-. .++. + .+++|+.|++..+.+.....
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHH
Confidence 3456789999988765331 1122 4466799999999887312 2333 3 37899999999988875444
Q ss_pred hhhc--CCCCCCEEeccC--Cccccc-----Cchhh--cCCCCCceeeccCCccccccchhhh---cCCCCcEEEccCCc
Q 012103 324 QELG--SWAEFDFIDVSE--NLLTGP-----IPPDM--CKRGTMRDLLMLQNKFTGEIPATYA---NCLTLQRFRVSNNS 389 (471)
Q Consensus 324 ~~~~--~~~~L~~L~L~~--n~l~~~-----~p~~~--~~~~~L~~L~l~~n~~~~~~~~~~~---~~~~L~~L~L~~n~ 389 (471)
..+. .+++|++|+|+. +...+. +...+ ..+++|+.|++.+|.+.+..+..+. .+++|++|+|+.|.
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 4443 789999999863 222111 11222 2478999999999988765444443 47899999999999
Q ss_pred Cccc----ccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCc
Q 012103 390 LKGT----VPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNR 437 (471)
Q Consensus 390 ~~~~----~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~ 437 (471)
+.+. ++..+..+++|+.|++++|.+++.....+...- ...++++.++
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred CChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence 9864 344445678999999999998866555555411 3568888887
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.01 E-value=2e-07 Score=89.70 Aligned_cols=315 Identities=9% Similarity=0.018 Sum_probs=172.7
Q ss_pred cccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCC
Q 012103 109 DLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLN 187 (471)
Q Consensus 109 ~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~ 187 (471)
++....+|+.+.+.. .++.... +|.++.+|+.+.+..+ ++.... .+|.++ +|+.+.+..+ + ..+........
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~-~aF~~c-~l~~i~~~~~-l--~~I~~~aF~~~ 113 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGD-GAFADT-KLQSYTGMER-V--KKFGDYVFQGT 113 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECT-TTTTTC-CCCEEEECTT-C--CEECTTTTTTC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEech-hhhcCC-CCceEECCce-e--eEeccceeccC
Confidence 345556777777754 3444444 6677777777777543 333322 455554 4555555433 1 11121111223
Q ss_pred CCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCC
Q 012103 188 KLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDAS 267 (471)
Q Consensus 188 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 267 (471)
+|+.+.+..+- .......|.++ +++.+.+..+ ++......+..+..++.+.+..+...........
T Consensus 114 ~L~~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~----------- 179 (379)
T 4h09_A 114 DLDDFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL----------- 179 (379)
T ss_dssp CCSEEECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-----------
T ss_pred CcccccCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccccee-----------
Confidence 45555554321 11111222222 3333333321 1212222333444444444433221100000000
Q ss_pred CCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCc
Q 012103 268 TNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIP 347 (471)
Q Consensus 268 ~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 347 (471)
.+........+.....+..+.+...... .....+..+..++.+.+..+ +.......+..+..|+.+.+..+ ++..-.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~ 256 (379)
T 4h09_A 180 YNKNKTILESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGS 256 (379)
T ss_dssp EETTSSEEEECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECT
T ss_pred cccccceeccccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCc
Confidence 0000000112334455666655544322 33455666788888888654 33344556778889999998776 442334
Q ss_pred hhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCC
Q 012103 348 PDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKA 427 (471)
Q Consensus 348 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~ 427 (471)
.++..+.+|+.+.+..+ +.......|.+|++|+.+.+.++.++..-..+|.++++|+.+.+..+ ++......|.+|++
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 334 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKA 334 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred cccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCC
Confidence 56777889999998654 44344567889999999999988888445678889999999999765 65555678899999
Q ss_pred CCeeeCCCCcCcccchhhhhcCC
Q 012103 428 LNLLFAEYNRLSGELPEEISKAT 450 (471)
Q Consensus 428 L~~L~l~~n~l~~~~p~~l~~l~ 450 (471)
|+.+.+..+ ++..-..+|..+.
T Consensus 335 L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 335 LSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CCCCCCCTT-CCEECTTTTTTSS
T ss_pred CCEEEECCc-cCEEchhHhhCCC
Confidence 999998765 5534455666554
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=5.4e-09 Score=89.61 Aligned_cols=116 Identities=9% Similarity=0.129 Sum_probs=59.3
Q ss_pred hhhcCCCCCCEEeccCC-ccccc----CchhhcCCCCCceeeccCCccccc----cchhhhcCCCCcEEEccCCcCccc-
Q 012103 324 QELGSWAEFDFIDVSEN-LLTGP----IPPDMCKRGTMRDLLMLQNKFTGE----IPATYANCLTLQRFRVSNNSLKGT- 393 (471)
Q Consensus 324 ~~~~~~~~L~~L~L~~n-~l~~~----~p~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~n~~~~~- 393 (471)
..+...+.|++|++++| .+... +...+...++|+.|++++|.+... +...+...++|++|+|++|.+.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34455666777777776 65432 223344455666666666666532 223334445566666666665532
Q ss_pred ---ccccccCCCCCCEeec--ccCccccc----cchhhhccCCCCeeeCCCCcCc
Q 012103 394 ---VPAGIWGLPEVNIIDI--ALNQIEGP----ITKDIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 394 ---~~~~~~~~~~L~~L~l--s~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~ 439 (471)
+...+...+.|++|++ ++|.++.. +...+...++|+.|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2334444555555555 55555543 2223333345555555555543
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.5e-08 Score=86.75 Aligned_cols=114 Identities=10% Similarity=0.123 Sum_probs=53.1
Q ss_pred hhcCCCCCceeeccCC-ccccc----cchhhhcCCCCcEEEccCCcCccc----ccccccCCCCCCEeecccCccccc--
Q 012103 349 DMCKRGTMRDLLMLQN-KFTGE----IPATYANCLTLQRFRVSNNSLKGT----VPAGIWGLPEVNIIDIALNQIEGP-- 417 (471)
Q Consensus 349 ~~~~~~~L~~L~l~~n-~~~~~----~~~~~~~~~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~ls~n~~~~~-- 417 (471)
.+...++|++|++++| .+... +...+...++|++|+|++|.+.+. +...+...+.|++|+|++|.+++.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3344455555555555 44432 222333445555555555555422 222333444555555555555542
Q ss_pred --cchhhhccCCCCeeeC--CCCcCccc----chhhhhcCCCCCEEeccCCcC
Q 012103 418 --ITKDIENAKALNLLFA--EYNRLSGE----LPEEISKATSLVVIKLNNNQL 462 (471)
Q Consensus 418 --~~~~~~~l~~L~~L~l--~~n~l~~~----~p~~l~~l~~L~~L~l~~n~~ 462 (471)
+...+...++|++|++ ++|.++.. +.+.+...++|+.|++++|.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2333344455555555 44555432 223333445555555555554
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.68 E-value=7.5e-11 Score=106.31 Aligned_cols=21 Identities=5% Similarity=-0.118 Sum_probs=14.4
Q ss_pred CceeeceEeCCCCCCEEEEEc
Q 012103 52 FCNFTGITCNSDSSFVQEIEL 72 (471)
Q Consensus 52 ~c~~~gv~c~~~~~~v~~L~L 72 (471)
.|.|.|+.|+....+|..+..
T Consensus 77 l~~~~g~i~~~~~~ki~~~v~ 97 (267)
T 3rw6_A 77 LKAVNYKILDRENRRISIIIN 97 (267)
T ss_dssp HHHTTSSCBCTTSCBCCCEEE
T ss_pred HHhcCcEEECCCCCEEEEEEe
Confidence 478999999875455554444
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.52 E-value=4.4e-08 Score=88.20 Aligned_cols=80 Identities=19% Similarity=0.315 Sum_probs=57.5
Q ss_pred hcCCCCcEEEccCCcCcc--cccccccCCCCCCEeecccCccccccchhhhccC--CCCeeeCCCCcCcccch-------
Q 012103 375 ANCLTLQRFRVSNNSLKG--TVPAGIWGLPEVNIIDIALNQIEGPITKDIENAK--ALNLLFAEYNRLSGELP------- 443 (471)
Q Consensus 375 ~~~~~L~~L~L~~n~~~~--~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~p------- 443 (471)
.++++|++|+|++|++++ .+|..+..+++|+.|+|++|++.+. ..+..+. +|++|++++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 567788888888888875 3455566778888888888888764 2344444 88888888888886655
Q ss_pred hhhhcCCCCCEEe
Q 012103 444 EEISKATSLVVIK 456 (471)
Q Consensus 444 ~~l~~l~~L~~L~ 456 (471)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 3467788888876
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.20 E-value=1.2e-06 Score=73.16 Aligned_cols=84 Identities=7% Similarity=0.008 Sum_probs=46.3
Q ss_pred CCCceeeccCCccccccchhhhcCCCCcEEEccCCc-CcccccccccCC----CCCCEeecccCc-cccccchhhhccCC
Q 012103 354 GTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNS-LKGTVPAGIWGL----PEVNIIDIALNQ-IEGPITKDIENAKA 427 (471)
Q Consensus 354 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~~~~~----~~L~~L~ls~n~-~~~~~~~~~~~l~~ 427 (471)
..|+.|+++++.++..-...+..|++|+.|+|++|. +++.--..+..+ ++|+.|++++|. +++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 456666666666665544555666666666666663 543322223332 346666666653 55544444555666
Q ss_pred CCeeeCCCCc
Q 012103 428 LNLLFAEYNR 437 (471)
Q Consensus 428 L~~L~l~~n~ 437 (471)
|+.|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666666653
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.01 E-value=3.1e-06 Score=70.61 Aligned_cols=83 Identities=4% Similarity=0.005 Sum_probs=41.2
Q ss_pred CCCEEeccCCcccccCchhhcCCCCCceeeccCCc-cccccchhhhcC----CCCcEEEccCCc-CcccccccccCCCCC
Q 012103 331 EFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNK-FTGEIPATYANC----LTLQRFRVSNNS-LKGTVPAGIWGLPEV 404 (471)
Q Consensus 331 ~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~----~~L~~L~L~~n~-~~~~~~~~~~~~~~L 404 (471)
.|++||++++.++..--..+..+++|+.|++++|. +++.-...+..+ ++|++|++++|. +++.--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555544333344555555555555552 444333334332 345555555553 543322334455555
Q ss_pred CEeecccCc
Q 012103 405 NIIDIALNQ 413 (471)
Q Consensus 405 ~~L~ls~n~ 413 (471)
+.|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 555555553
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=3.1e-05 Score=65.85 Aligned_cols=114 Identities=7% Similarity=0.107 Sum_probs=63.4
Q ss_pred hcCCCCCCEEeccCC-cccc----cCchhhcCCCCCceeeccCCccccc----cchhhhcCCCCcEEEccCCcCccc---
Q 012103 326 LGSWAEFDFIDVSEN-LLTG----PIPPDMCKRGTMRDLLMLQNKFTGE----IPATYANCLTLQRFRVSNNSLKGT--- 393 (471)
Q Consensus 326 ~~~~~~L~~L~L~~n-~l~~----~~p~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~n~~~~~--- 393 (471)
+..-+.|++|+|++| .+.. .+.+.+.....|+.|+|++|.+... +.+.+..-+.|++|+|++|.|.+.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344566777777764 5542 2334455566777777777776643 233344456677777777776632
Q ss_pred -ccccccCCCCCCEeecccC---ccccc----cchhhhccCCCCeeeCCCCcCc
Q 012103 394 -VPAGIWGLPEVNIIDIALN---QIEGP----ITKDIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 394 -~~~~~~~~~~L~~L~ls~n---~~~~~----~~~~~~~l~~L~~L~l~~n~l~ 439 (471)
+...+..-+.|+.|+|++| .+... +.+.+..-+.|+.|+++.|.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 3334555556666666644 33321 2334444456666666655543
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.62 E-value=8.5e-05 Score=63.14 Aligned_cols=113 Identities=11% Similarity=0.106 Sum_probs=57.1
Q ss_pred ccCCCCCCEEEcccC-cCcc----cCchhhcCCCCCCEEeccCCcccc----cCchhhcCCCCCceeeccCCccccc---
Q 012103 302 LGKFKKLVNLSLYTN-KLTG----ALPQELGSWAEFDFIDVSENLLTG----PIPPDMCKRGTMRDLLMLQNKFTGE--- 369 (471)
Q Consensus 302 l~~~~~L~~L~L~~n-~l~~----~~~~~~~~~~~L~~L~L~~n~l~~----~~p~~~~~~~~L~~L~l~~n~~~~~--- 369 (471)
+.+-+.|++|+|++| .+.. .+.+.+..-..|+.|+|++|.+.. .+.+.+...+.|+.|+|++|.|+..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 334455666666653 5532 123344445566666666666642 2233344455666666666666542
Q ss_pred -cchhhhcCCCCcEEEccCC---cCccc----ccccccCCCCCCEeecccCcc
Q 012103 370 -IPATYANCLTLQRFRVSNN---SLKGT----VPAGIWGLPEVNIIDIALNQI 414 (471)
Q Consensus 370 -~~~~~~~~~~L~~L~L~~n---~~~~~----~~~~~~~~~~L~~L~ls~n~~ 414 (471)
+.+.+..-+.|++|+|++| .+... +...+..-+.|+.|+++.|.+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2233444455666666543 22321 233444455666666665544
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0025 Score=50.36 Aligned_cols=57 Identities=11% Similarity=0.074 Sum_probs=43.9
Q ss_pred cEEEccCCcCc-ccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCc
Q 012103 381 QRFRVSNNSLK-GTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 381 ~~L~L~~n~~~-~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 439 (471)
..++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46788888876 35665443 46889999999998777777888888999999988764
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.007 Score=47.78 Aligned_cols=57 Identities=14% Similarity=0.220 Sum_probs=44.4
Q ss_pred ceeeccCCccc-cccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccc
Q 012103 357 RDLLMLQNKFT-GEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIE 415 (471)
Q Consensus 357 ~~L~l~~n~~~-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~ 415 (471)
..++.+++.++ ..+|..+ -++|+.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47788888876 3556543 247999999999999555566788999999999999875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 471 | ||||
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 3e-18 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-10 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 4e-16 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 8e-14 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 4e-13 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 8e-12 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-11 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 5e-06 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 4e-04 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-14 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-12 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 6e-12 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 3e-04 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 3e-12 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-09 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 4e-08 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 0.002 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-07 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 7e-06 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 0.001 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 2e-06 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 6e-06 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 1e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 7e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.004 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 0.001 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.004 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 3e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 3e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 6e-04 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 6e-04 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 8e-04 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.003 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.004 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 83.3 bits (204), Expect = 3e-18
Identities = 64/310 (20%), Positives = 110/310 (35%), Gaps = 12/310 (3%)
Query: 21 NSDELQILLNLKTSLKDSKSSIFSSWVSNNHFCN--FTGITCNSDSSF--VQEIELSNRN 76
N + Q LL +K L + + SSW+ CN + G+ C++D+ V ++LS N
Sbjct: 4 NPQDKQALLQIKKDLGNP--TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 77 LKGTLPF-DSICQLQALHKLSL-GFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEIS 134
L P S+ L L+ L + G N+L G I + +L YL + + SG+ P+
Sbjct: 62 LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121
Query: 135 SLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYL 194
S + S+ ++ NLV ++ N + +
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 195 TNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVG 254
+ + G+IP NL + + K +
Sbjct: 182 SRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD--KNTQKIHLAKNSLAFDLGK 239
Query: 255 LRNLTNLANFDASTNFLEGDL-SEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSL 313
+ NL D N + G L + L L +L + N GE+P + G ++ +
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAY 298
Query: 314 YTNKLTGALP 323
NK P
Sbjct: 299 ANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 60.5 bits (145), Expect = 1e-10
Identities = 59/264 (22%), Positives = 90/264 (34%), Gaps = 25/264 (9%)
Query: 208 GNLTELINLELSDNNISG--EIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFD 265
+ NL+LS N+ IPS + NL L L +
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN------------------- 87
Query: 266 ASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQE 325
N + + LT L L + SG +P L + K LV L N L+G LP
Sbjct: 88 ---NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144
Query: 326 LGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRV 385
+ S I N ++G IP + + + L L +
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL 204
Query: 386 SNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEE 445
S N L+G I +A + +K LN L NR+ G LP+
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLA-KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG 263
Query: 446 ISKATSLVVIKLNNNQLTGKIPAS 469
+++ L + ++ N L G+IP
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQG 287
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 77.7 bits (190), Expect = 4e-16
Identities = 52/224 (23%), Positives = 88/224 (39%), Gaps = 18/224 (8%)
Query: 46 WVSNNHFCNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGE 105
+ + I+ + + ++ + +N + P + L +LSL N L
Sbjct: 178 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLD---ELSLNGNQLKDI 234
Query: 106 ISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLV 165
+ L + L LDL NN S P +S L +L L L + S + P L +TN
Sbjct: 235 GT--LASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTN-- 289
Query: 166 SLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISG 225
+ + + L L +L L +I P + +LT+L L ++N +S
Sbjct: 290 ----LELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD 343
Query: 226 EIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTN 269
S + NL + L +NQ+S P L NLT + +
Sbjct: 344 --VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 70.4 bits (171), Expect = 8e-14
Identities = 74/386 (19%), Positives = 140/386 (36%), Gaps = 37/386 (9%)
Query: 89 LQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSG 148
L K LG ++ +S+ + ++ L S + LN L + + +
Sbjct: 21 LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SIDGVEYLNNLTQINFSNNQ 77
Query: 149 FSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIG 208
+ + P L N+T LV + + +N + L L ID +
Sbjct: 78 LTDITP---LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134
Query: 209 NLTELINLEL--------------SDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVG 254
N EL + + + NL L RL++ +N++S +
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194
Query: 255 LRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLY 314
LTNL + A+ N + ++ + LTNL L L NQ L L +L L
Sbjct: 195 --KLTNLESLIATNNQISD-ITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249
Query: 315 TNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATY 374
N+++ P L + + + N ++ P T +L Q + +
Sbjct: 250 NNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED----ISPI 303
Query: 375 ANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAE 434
+N L + N++ P + L ++ + A N++ + N +N L A
Sbjct: 304 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAG 359
Query: 435 YNRLSGELPEEISKATSLVVIKLNNN 460
+N++S P ++ T + + LN+
Sbjct: 360 HNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 68.1 bits (165), Expect = 4e-13
Identities = 47/206 (22%), Positives = 74/206 (35%), Gaps = 16/206 (7%)
Query: 40 SSIFSSWVSNNHFCNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGF 99
+ + + + IT + + E+ L+ LK ++ L L L L
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLAN 250
Query: 100 NSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLG 159
N + L+ KL L LG N S IS L L L + + +
Sbjct: 251 NQISNLAP--LSGLTKLTELKLGANQISN----ISPLAGLTALTNLELNENQLEDISPIS 304
Query: 160 NMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELS 219
N+ NL L++ N V L KL L+ N + + NLT + L
Sbjct: 305 NLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAG 359
Query: 220 DNNISGEIPSEIGNLVKLWRLELYNN 245
N IS P + NL ++ +L L +
Sbjct: 360 HNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 64.3 bits (155), Expect = 8e-12
Identities = 53/230 (23%), Positives = 71/230 (30%), Gaps = 40/230 (17%)
Query: 87 CQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNL 146
+L L L N + L L L N ++SL L L L
Sbjct: 194 AKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLAN 250
Query: 147 SGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVE 206
+ S + P L +T L L +G N L +
Sbjct: 251 NQISNLAP---LSGLTKLTELKLGANQISNISPLA-----GLTALTNLELNENQLEDISP 302
Query: 207 IGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDA 266
I NL L L L NNIS P + +L KL RL NN++S
Sbjct: 303 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD----------------- 343
Query: 267 STNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTN 316
+S + LTN+ L NQ S P L ++ L L
Sbjct: 344 --------VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 63.5 bits (153), Expect = 1e-11
Identities = 76/383 (19%), Positives = 126/383 (32%), Gaps = 32/383 (8%)
Query: 54 NFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNC 113
N T +D V ++ +K D + L L +++ N L L N
Sbjct: 33 NVTDTVSQTDLDQVTTLQADRLGIKS---IDGVEYLNNLTQINFSNNQLTDITP--LKNL 87
Query: 114 VKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNP 173
KL + + NN + P + N N + N
Sbjct: 88 TKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL----ELSSNT 143
Query: 174 FDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGN 233
+ L +L++ + NLT L L++S N + S +
Sbjct: 144 ISDISALSGLTSLQQLSFGNQVTDLKP------LANLTTLERLDISSNKV--SDISVLAK 195
Query: 234 LVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQ 293
L L L NNQ+S P+ LTNL + N L+ + + LTNL L L NQ
Sbjct: 196 LTNLESLIATNNQISDITPL--GILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQ 252
Query: 294 FSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKR 353
S P L KL L L N+++ P + ++ ++ +
Sbjct: 253 ISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL----EDISPISNL 306
Query: 354 GTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQ 413
+ L + N + P ++ LQR +NN + + + L +N + NQ
Sbjct: 307 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQ 362
Query: 414 IEGPITKDIENAKALNLLFAEYN 436
I + N + L
Sbjct: 363 ISDLT--PLANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 46.1 bits (108), Expect = 5e-06
Identities = 51/362 (14%), Positives = 110/362 (30%), Gaps = 67/362 (18%)
Query: 160 NMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELS 219
+ + +G T + ++ L L SIDG + L L + S
Sbjct: 20 ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFS 74
Query: 220 DNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVR 279
+N ++ P + NL KL + + NNQ++ P+ + L +
Sbjct: 75 NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132
Query: 280 F----------LTNLVTLQLFKNQFSGEVPAELGKFKKLVNLS----LYTNKLTGALPQE 325
++++ L + ++ K L NL+ L + +
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192
Query: 326 LGSWAEFDFIDVSENLLTGPIPPDMCKR--------------------GTMRDLLMLQNK 365
L + + + N ++ P + + DL + N+
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 252
Query: 366 FTGEIPATYANCLTLQRFRVSNNSLKGTVP--------------------AGIWGLPEVN 405
+ P + L ++ N + P + I L +
Sbjct: 253 ISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLT 310
Query: 406 IIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGK 465
+ + N I + + L LF N++S ++ T++ + +NQ++
Sbjct: 311 YLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDL 366
Query: 466 IP 467
P
Sbjct: 367 TP 368
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 40.0 bits (92), Expect = 4e-04
Identities = 48/289 (16%), Positives = 90/289 (31%), Gaps = 24/289 (8%)
Query: 179 FPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLW 238
F D L + L ++ + +L ++ L+ I + L L
Sbjct: 16 FTDTA--LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS--IDGVEYLNNLT 69
Query: 239 RLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEV 298
++ NNQL+ P L+NLT L + + N + +
Sbjct: 70 QINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 127
Query: 299 PAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRD 358
L +L S + ++ F L + + +
Sbjct: 128 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV 187
Query: 359 LLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPI 418
+ A L+ +NN + P GI ++ + + NQ++
Sbjct: 188 SDISV----------LAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKDIG 235
Query: 419 TKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIP 467
T + + L L N++S P +S T L +KL NQ++ P
Sbjct: 236 T--LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 280
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 71.6 bits (174), Expect = 2e-14
Identities = 55/275 (20%), Positives = 86/275 (31%), Gaps = 22/275 (8%)
Query: 189 LNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLS 248
L L N I + NL L L L +N IS P LVKL RL L NQL
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92
Query: 249 GKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKL 308
+ L L + + + +V L + SG KKL
Sbjct: 93 ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152
Query: 309 VNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTG 368
+ + +T S E + + N +T + + L + N +
Sbjct: 153 SYIRIADTNITTIPQGLPPSLTE---LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209
Query: 369 EIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKAL 428
+ AN L+ ++NN L VP G+ + ++ + N I
Sbjct: 210 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS------------- 255
Query: 429 NLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463
P +K S + L +N +
Sbjct: 256 -----AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.4 bits (158), Expect = 2e-12
Identities = 49/256 (19%), Positives = 84/256 (32%), Gaps = 31/256 (12%)
Query: 92 LHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLSGFS 150
L L N + D N L L L NN S P + L +L+ LYL+ +
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92
Query: 151 GVFPWM--------------------SLGNMTNLVSLSVGDNPFDPTPF-PDQVVKLNKL 189
+ M + ++ + +G NP + + KL
Sbjct: 93 ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152
Query: 190 NWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSG 249
+++ + + +I + G L L L N I+ + + L L +L L N +S
Sbjct: 153 SYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209
Query: 250 KLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSG------EVPAELG 303
L N +L + N L + + + L N S P
Sbjct: 210 VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 269
Query: 304 KFKKLVNLSLYTNKLT 319
K +SL++N +
Sbjct: 270 KKASYSGVSLFSNPVQ 285
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.9 bits (154), Expect = 6e-12
Identities = 41/260 (15%), Positives = 77/260 (29%), Gaps = 11/260 (4%)
Query: 162 TNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDN 221
+ L + +N L L+ L L N I P L +L L LS N
Sbjct: 31 PDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89
Query: 222 NISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFL 281
+ L +L E ++ + GL + + + + +
Sbjct: 90 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149
Query: 282 TNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENL 341
L +++ + G L L L NK+T L + +S N
Sbjct: 150 KKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206
Query: 342 LTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKG------TVP 395
++ L L N ++P A+ +Q + NN++ P
Sbjct: 207 ISAV-DNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 265
Query: 396 AGIWGLPEVNIIDIALNQIE 415
+ + + N ++
Sbjct: 266 GYNTKKASYSGVSLFSNPVQ 285
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.0 bits (92), Expect = 3e-04
Identities = 30/190 (15%), Positives = 58/190 (30%), Gaps = 28/190 (14%)
Query: 282 TNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENL 341
+ L L N+ + + K L L L NK++ P + + + +S+N
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 342 LTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGL 401
L +R K + + ++ S G G+
Sbjct: 91 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS-GIENGAFQGM 149
Query: 402 PEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQ 461
+++ I IA I +P+ + SL + L+ N+
Sbjct: 150 KKLSYIRIADTNIT-------------------------TIPQGLP--PSLTELHLDGNK 182
Query: 462 LTGKIPASIY 471
+T AS+
Sbjct: 183 ITKVDAASLK 192
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.8 bits (156), Expect = 3e-12
Identities = 59/256 (23%), Positives = 84/256 (32%), Gaps = 8/256 (3%)
Query: 67 VQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVF 126
Q I L + +P S + L L L N L + L+ LDL +N
Sbjct: 34 SQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92
Query: 127 SGSFP--EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVV 184
S L L L+L+ G + P + + L L + DN P D
Sbjct: 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF-RGLAALQYLYLQDNALQALP-DDTFR 150
Query: 185 KLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYN 244
L L L+L I L L L L N ++ P +L +L L L+
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210
Query: 245 NQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGK 304
N LS L L L + N D L + ++ +P L
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRL-A 269
Query: 305 FKKLVNLSLYTNKLTG 320
+ L L+ N L G
Sbjct: 270 GRDLKRLA--ANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.7 bits (135), Expect = 2e-09
Identities = 39/247 (15%), Positives = 78/247 (31%), Gaps = 5/247 (2%)
Query: 226 EIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLV 285
+P I + R+ L+ N++S R NL +N L + L+
Sbjct: 25 AVPVGIPAASQ--RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82
Query: 286 TLQLFKN--QFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLT 343
+ Q PA +L L L L P A ++ + +N L
Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142
Query: 344 GPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPE 403
G + L + N+ + + +L R + N + P L
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202
Query: 404 VNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463
+ + + N + T+ + +AL L N + L + +++++
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD-CRARPLWAWLQKFRGSSSEVP 261
Query: 464 GKIPASI 470
+P +
Sbjct: 262 CSLPQRL 268
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (124), Expect = 4e-08
Identities = 43/273 (15%), Positives = 74/273 (27%), Gaps = 34/273 (12%)
Query: 196 NCSIDG--QIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKL---------------- 237
+C G +PV I ++ + L N IS + L
Sbjct: 17 SCPQQGLQAVPVGIPAASQ--RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA 74
Query: 238 ---------WRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEG-DLSEVRFLTNLVTL 287
N QL P L L L+ R L L L
Sbjct: 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134
Query: 288 QLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIP 347
L N L +L L+ N+++ + D + + +N + P
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194
Query: 348 PDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNII 407
G + L + N + A LQ R+++N A +
Sbjct: 195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKF 253
Query: 408 DIALNQIEGPITKDIENAKALNLLFAEYNRLSG 440
+ +++ + + + L N L G
Sbjct: 254 RGSSSEVPCSLPQRLAGRDLKRL---AANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (85), Expect = 0.002
Identities = 28/176 (15%), Positives = 56/176 (31%), Gaps = 3/176 (1%)
Query: 297 EVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTM 356
VP + + L+ N+++ + + + N+L +
Sbjct: 25 AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82
Query: 357 RDLLMLQNKFTGEI-PATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIE 415
L + N + PAT+ L + L+ P GL + + + N ++
Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142
Query: 416 GPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASIY 471
+ L LF NR+S SL + L+ N++ P +
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.7 bits (117), Expect = 2e-07
Identities = 43/208 (20%), Positives = 66/208 (31%), Gaps = 9/208 (4%)
Query: 62 SDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDL 121
S + E+ RNL LP D LH L N LY L +L L+L
Sbjct: 7 SKVASHLEVNCDKRNLT-ALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNL 62
Query: 122 GNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPD 181
++ L L + + LG +++ +
Sbjct: 63 DRA----ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 182 QVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLE 241
+ L +L LYL + P + +L L L++NN++ + L L L
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178
Query: 242 LYNNQLSGKLPVGLRNLTNLANFDASTN 269
L N L +P G L N
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.1 bits (105), Expect = 7e-06
Identities = 42/197 (21%), Positives = 70/197 (35%), Gaps = 7/197 (3%)
Query: 196 NCSIDG--QIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPV 253
NC +P ++ T L LS+N + + + +L +L L +L+
Sbjct: 16 NCDKRNLTALPPDLPKDTT--ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD 73
Query: 254 GLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSL 313
L L D S N L+ + L L L + N+ + L +L L L
Sbjct: 74 --GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 314 YTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPAT 373
N+L P L + + + ++ N LT +P + D L+LQ IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 374 YANCLTLQRFRVSNNSL 390
+ L + N
Sbjct: 191 FFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (87), Expect = 0.001
Identities = 31/181 (17%), Positives = 59/181 (32%), Gaps = 4/181 (2%)
Query: 282 TNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENL 341
+ L L +N A L + +L L+L +LT ++ +
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVLGTLDLSHN 87
Query: 342 LTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGL 401
+P + L + N+ T LQ + N LK P +
Sbjct: 88 QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 402 PEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQ 461
P++ + +A N + + + L+ L + N L +P+ + L L+ N
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206
Query: 462 L 462
Sbjct: 207 W 207
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.3 bits (104), Expect = 2e-06
Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 8/122 (6%)
Query: 117 QYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDP 176
+ L L + + + L + HL L+ + + P ++ L L V +
Sbjct: 1 RVLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRALPPALA-----ALRCLEVLQASDNA 54
Query: 177 TPFPDQVVKLNKLNWLYLTNCSI-DGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLV 235
D V L +L L L N + + + L+ L L N++ + L
Sbjct: 55 LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLA 113
Query: 236 KL 237
++
Sbjct: 114 EM 115
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.6 bits (102), Expect = 6e-06
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 5/106 (4%)
Query: 216 LELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDL 275
L L+ +++ + + L+ + L+L +N+L P L L L AS N ++
Sbjct: 3 LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNA-LENV 58
Query: 276 SEVRFLTNLVTLQLFKNQF-SGEVPAELGKFKKLVNLSLYTNKLTG 320
V L L L L N+ L +LV L+L N L
Sbjct: 59 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.3 bits (91), Expect = 1e-04
Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 6/120 (5%)
Query: 95 LSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFP 154
L L L + L + + +LDL +N P +++L L+ L + + V
Sbjct: 3 LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60
Query: 155 WMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELI 214
+L + L + +N + +V +L L L S+ L E++
Sbjct: 61 VANLPRLQE---LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEML 116
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (105), Expect = 1e-05
Identities = 11/91 (12%), Positives = 28/91 (30%), Gaps = 4/91 (4%)
Query: 163 NLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIG----NLTELINLEL 218
++ SL + + + + L + + L +C + +I L L L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 219 SDNNISGEIPSEIGNLVKLWRLELYNNQLSG 249
N + + ++ ++ L
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (93), Expect = 3e-04
Identities = 15/99 (15%), Positives = 27/99 (27%), Gaps = 8/99 (8%)
Query: 67 VQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGE----ISKDLNNCVKLQYLDLG 122
+Q +++ L + + LQ + L L IS L L L+L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 123 NNVFSG----SFPEISSLNELQHLYLNLSGFSGVFPWMS 157
+N + + L+L
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 102
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (90), Expect = 7e-04
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 8/92 (8%)
Query: 153 FPWMSLGNMTNLVSLSVGDNPFDPT---PFPDQVVKLNKLNWLYLTNCSIDGQIPVEIG- 208
+ L L + D + ++ + L L L+N + +++
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419
Query: 209 ----NLTELINLELSDNNISGEIPSEIGNLVK 236
L L L D S E+ + L K
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (84), Expect = 0.004
Identities = 12/110 (10%), Positives = 36/110 (32%), Gaps = 20/110 (18%)
Query: 212 ELINLELSDNNISGEIPSEI-GNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNF 270
++ +L++ +S +E+ L + + L + L+ +++++
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA---RCKDISSA--------- 50
Query: 271 LEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTG 320
+R L L L N+ + + + + + L
Sbjct: 51 -------LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 1e-04
Identities = 36/248 (14%), Positives = 70/248 (28%), Gaps = 13/248 (5%)
Query: 184 VKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGE-IPSEIGNLVKLWRLEL 242
+ + +D + E + + +++LS++ I + + KL L L
Sbjct: 20 LLSQGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 78
Query: 243 YNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQ--------- 293
+LS + L +NL + S + + L++ L
Sbjct: 79 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH 138
Query: 294 FSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKR 353
V +L N L + +D+S++++ +
Sbjct: 139 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ 198
Query: 354 GTMRDLLMLQN--KFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIAL 411
L L E TL+ +V GT+ LP + I
Sbjct: 199 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHF 258
Query: 412 NQIEGPIT 419
I P
Sbjct: 259 TTIARPTI 266
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (87), Expect = 0.001
Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 2/105 (1%)
Query: 93 HKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGV 152
L L +L+ +++ L + + + E S +QH+ L+ S
Sbjct: 3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61
Query: 153 FPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNC 197
L + L +LS+ P + + K + L L L+ C
Sbjct: 62 TLHGILSQCSKLQNLSLEGLRLS-DPIVNTLAKNSNLVRLNLSGC 105
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 41.7 bits (96), Expect = 1e-04
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 8/94 (8%)
Query: 191 WLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGK 250
+ +I L L +S+N + E+P+ L +L N L+ +
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLI---ASFNHLA-E 318
Query: 251 LPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNL 284
+P +NL L N L + +L
Sbjct: 319 VPELPQNLKQL---HVEYNPLREFPDIPESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 37.1 bits (84), Expect = 0.004
Identities = 26/145 (17%), Positives = 41/145 (28%), Gaps = 10/145 (6%)
Query: 46 WVSNNHFCNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGE 105
+ D+ EL + + L L N+ E
Sbjct: 216 LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNE 275
Query: 106 ISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLV 165
I + L+ L++ NN P + L+ L + + + V NL
Sbjct: 276 IRSLCDLPPSLEELNVSNNKLI-ELP--ALPPRLERLIASFNHLAEVPELPQ-----NLK 327
Query: 166 SLSVGDNPFDPTPFPDQVVKLNKLN 190
L V NP FPD + L
Sbjct: 328 QLHVEYNPL--REFPDIPESVEDLR 350
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 40.0 bits (92), Expect = 3e-04
Identities = 29/223 (13%), Positives = 57/223 (25%), Gaps = 16/223 (7%)
Query: 209 NLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDAST 268
L I + +N++ + +L + L + ++ + G++ L NL +
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKD 72
Query: 269 NFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGS 328
N + L K L + L + +
Sbjct: 73 NQIT---------DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT 123
Query: 329 WAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNN 388
L I G + AN L + +N
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183
Query: 389 SLKGTVPAGIWGLPEVNIIDIALNQIEGPIT-KDIENAKALNL 430
+ P + LP + + + NQI + N + L
Sbjct: 184 KISDISP--LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTL 224
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 40.0 bits (92), Expect = 3e-04
Identities = 36/226 (15%), Positives = 70/226 (30%), Gaps = 18/226 (7%)
Query: 88 QLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLS 147
L K++ G +++ ++ + + L + + + LN L L L +
Sbjct: 17 ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDN 73
Query: 148 GFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEI 207
+ + P +L +T L + L+ + + G +++
Sbjct: 74 QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133
Query: 208 GNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDAS 267
+I + L L NL+ L A
Sbjct: 134 ------------LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD 181
Query: 268 TNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSL 313
N + D+S + L NL+ + L NQ S P L L ++L
Sbjct: 182 DNKIS-DISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 38.9 bits (89), Expect = 6e-04
Identities = 41/215 (19%), Positives = 72/215 (33%), Gaps = 24/215 (11%)
Query: 67 VQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVF 126
+I N+ T+ + + L G ++ G + L L+L +N
Sbjct: 21 AIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-----VQYLNNLIGLELKDNQI 75
Query: 127 SGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKL 186
+ + +L ++ L L+ + V L ++ L S P + L
Sbjct: 76 T-DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134
Query: 187 NKLNWLYLTNCSIDGQI--------------PVEIGNLTELINLELSDNNISGEIPSEIG 232
+ G + NL++L L+ DN IS P +
Sbjct: 135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LA 192
Query: 233 NLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDAS 267
+L L + L NNQ+S P L N +NL +
Sbjct: 193 SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 38.5 bits (88), Expect = 6e-04
Identities = 42/195 (21%), Positives = 71/195 (36%), Gaps = 18/195 (9%)
Query: 67 VQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVF 126
+ L N+ T+ + Q+ L LG S+ G + L ++ NN
Sbjct: 20 KMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQL 74
Query: 127 SGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKL 186
+ P L L L L + + L N+TNL L++ +N + L
Sbjct: 75 TDITP----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 130
Query: 187 NKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQ 246
N+L T I + + +++D + NL L RL++ +N+
Sbjct: 131 NRLELSSNTISDISALSGLTSLQQLNFSSNQVTD-------LKPLANLTTLERLDISSNK 183
Query: 247 LSGKLPVGLRNLTNL 261
+S L LTNL
Sbjct: 184 VSD--ISVLAKLTNL 196
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 38.5 bits (88), Expect = 8e-04
Identities = 33/198 (16%), Positives = 65/198 (32%), Gaps = 22/198 (11%)
Query: 62 SDSSFVQEI--ELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYL 119
SD +F + I L +++ + + +L ++ ++ + + + + L
Sbjct: 19 SDDAFAETIKDNLKKKSVTDAV---TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKL 73
Query: 120 DLGNNVFSG-------SFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDN 172
L N + L+E + L+ +SL + +
Sbjct: 74 FLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHL 133
Query: 173 PFDPTPFPDQVVKLNKLNWLYLTNCSIDGQI------PVEIGNLTELINLELSDNNISGE 226
P + + + LT V + LT+L NL LS N+IS
Sbjct: 134 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD- 192
Query: 227 IPSEIGNLVKLWRLELYN 244
+ L L LEL++
Sbjct: 193 -LRALAGLKNLDVLELFS 209
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 37.2 bits (84), Expect = 0.003
Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 5/99 (5%)
Query: 46 WVSNNHFCNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGE 105
+ ++ N + + LS R + S + L L L +N + +
Sbjct: 229 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD 288
Query: 106 ISKDL-----NNCVKLQYLDLGNNVFSGSFPEISSLNEL 139
+ L L +L+L N FS + + E+
Sbjct: 289 AVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 327
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (82), Expect = 0.004
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 191 WLYLTNCSIDGQIPVEI-GNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSG 249
L L++ + ++P ++ + + L++S I + NL KL YN +
Sbjct: 180 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK--- 236
Query: 250 KLP 252
KLP
Sbjct: 237 KLP 239
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 471 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 100.0 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.98 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.97 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.97 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.94 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.94 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.92 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.92 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.9 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.89 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.84 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.82 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.82 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.78 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.77 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.77 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.74 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.73 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.72 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.72 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.72 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.71 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.7 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.69 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.67 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.63 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.63 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.56 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.52 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.52 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.51 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.48 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.37 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.31 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.3 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.21 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.58 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.35 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.1 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.99 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.74 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.47 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=100.00 E-value=3.3e-41 Score=316.78 Aligned_cols=292 Identities=29% Similarity=0.476 Sum_probs=204.4
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCce--eeceEeCCC--CCCEEEEEcCCCCCccc--cCcccccCCCCC
Q 012103 19 CINSDELQILLNLKTSLKDSKSSIFSSWVSNNHFCN--FTGITCNSD--SSFVQEIELSNRNLKGT--LPFDSICQLQAL 92 (471)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~--~~gv~c~~~--~~~v~~L~L~~~~l~g~--l~~~~~~~l~~L 92 (471)
-|.++|++||++||+++.+| ..+++|..+.|||. |.||+|+.. ..||++|+|+++++.|. +|.. ++++++|
T Consensus 2 ~c~~~e~~aLl~~k~~~~~~--~~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~-l~~L~~L 78 (313)
T d1ogqa_ 2 LCNPQDKQALLQIKKDLGNP--TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSS-LANLPYL 78 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCC--GGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGG-GGGCTTC
T ss_pred CCCHHHHHHHHHHHHHCCCC--CcCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChH-HhcCccc
Confidence 37899999999999999877 56899998899994 999999874 34899999999999874 5655 8888888
Q ss_pred cEEeCCC-CCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEcc
Q 012103 93 HKLSLGF-NSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVG 170 (471)
Q Consensus 93 ~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 170 (471)
++|++++ |.+.|.+|..++++++|++|++++|++.+.++ .+..+++|+++++++|.+.+
T Consensus 79 ~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~------------------- 139 (313)
T d1ogqa_ 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG------------------- 139 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-------------------
T ss_pred cccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccc-------------------
Confidence 8888876 67777888888888888888888777776555 34445555555555444433
Q ss_pred CCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCC-cEEEcccCcCCCcCCccccCCCCCCeEeeccccccc
Q 012103 171 DNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTEL-INLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSG 249 (471)
Q Consensus 171 ~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L-~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 249 (471)
.+|..+..+++++++++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..+.. .++++..+...+
T Consensus 140 -------~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~~~ 211 (313)
T d1ogqa_ 140 -------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNMLEG 211 (313)
T ss_dssp -------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEEEE
T ss_pred -------cCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence 345555666666666666666666677766666654 66777777777666666665543 356777777766
Q ss_pred cCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCC
Q 012103 250 KLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSW 329 (471)
Q Consensus 250 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~ 329 (471)
.+|..+..+++++.++++++.+.+.++.+..+++|++|++++|+++|.+|..++++++|++|+|++|+++|.+|. +.++
T Consensus 212 ~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L 290 (313)
T d1ogqa_ 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNL 290 (313)
T ss_dssp CCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTG
T ss_pred cccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccC
Confidence 666666666677777777666666555566666666666666666666666666666666666666666666653 3445
Q ss_pred CCCCEEeccCCc
Q 012103 330 AEFDFIDVSENL 341 (471)
Q Consensus 330 ~~L~~L~L~~n~ 341 (471)
++|+.+++++|+
T Consensus 291 ~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 291 QRFDVSAYANNK 302 (313)
T ss_dssp GGSCGGGTCSSS
T ss_pred CCCCHHHhCCCc
Confidence 555555565554
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.98 E-value=5e-32 Score=253.76 Aligned_cols=255 Identities=27% Similarity=0.430 Sum_probs=179.7
Q ss_pred CCcEEEcccCcCCC--cCCccccCCCCCCeEeecc-ccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEE
Q 012103 212 ELINLELSDNNISG--EIPSEIGNLVKLWRLELYN-NQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTL 287 (471)
Q Consensus 212 ~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L 287 (471)
+++.|+++++.+.| .+|..++++++|++|++++ |.+.|.+|..++++++|++|++++|++.+..+ .+..+..|+++
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l 130 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence 34445555554444 2445555555555555543 44555555555555555555555555555444 44555666666
Q ss_pred EccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCC-CEEeccCCcccccCchhhcCCCCCceeeccCCcc
Q 012103 288 QLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEF-DFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKF 366 (471)
Q Consensus 288 ~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L-~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~ 366 (471)
++++|.+.+.+|..+..++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..+.. ..+++..+..
T Consensus 131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~ 209 (313)
T d1ogqa_ 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEE
T ss_pred ccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 666666666677777777777778887777777777777666654 77788888887777777666543 4688888888
Q ss_pred ccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhh
Q 012103 367 TGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEI 446 (471)
Q Consensus 367 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l 446 (471)
.+.+|..+..+++++.+++++|.+.+.+| .+..+++|++|++++|+++|.+|+.+.++++|++|++++|+++|.+|+ +
T Consensus 210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~ 287 (313)
T d1ogqa_ 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-G 287 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-S
T ss_pred ccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-c
Confidence 88888888888888888888888886655 577788888888888888888888888888888888888888888885 5
Q ss_pred hcCCCCCEEeccCCc-Cccc-CCCC
Q 012103 447 SKATSLVVIKLNNNQ-LTGK-IPAS 469 (471)
Q Consensus 447 ~~l~~L~~L~l~~n~-~sg~-ip~~ 469 (471)
+++++|+.+++++|+ ++|. +|.+
T Consensus 288 ~~L~~L~~l~l~~N~~l~g~plp~c 312 (313)
T d1ogqa_ 288 GNLQRFDVSAYANNKCLCGSPLPAC 312 (313)
T ss_dssp TTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred ccCCCCCHHHhCCCccccCCCCCCC
Confidence 777888888888887 5664 7754
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.97 E-value=1e-28 Score=237.88 Aligned_cols=343 Identities=20% Similarity=0.272 Sum_probs=228.0
Q ss_pred CCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEE
Q 012103 88 QLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSL 167 (471)
Q Consensus 88 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 167 (471)
.+.+|++|++++++++.. +.+..+++|++|++++|++++.+ .+.++++|++|++++|.+.+.. .+.++++|+.|
T Consensus 42 ~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~-~l~~L~~L~~L~L~~n~i~~i~---~l~~l~~L~~L 115 (384)
T d2omza2 42 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADIT---PLANLTNLTGL 115 (384)
T ss_dssp HHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG---GGTTCTTCCEE
T ss_pred HhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCc-cccCCccccccccccccccccc---ccccccccccc
Confidence 445566666666666531 34556666666666666666543 3666666666666666666542 35666777777
Q ss_pred EccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccc
Q 012103 168 SVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQL 247 (471)
Q Consensus 168 ~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 247 (471)
+++++.+.. .........+.......+.+....+................ .....+.............+..
T Consensus 116 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 187 (384)
T d2omza2 116 TLFNNQITD---IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV-----TDLKPLANLTTLERLDISSNKV 187 (384)
T ss_dssp ECCSSCCCC---CGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC-----CCCGGGTTCTTCCEEECCSSCC
T ss_pred ccccccccc---ccccccccccccccccccccccccccccccccccccccccc-----chhhhhcccccccccccccccc
Confidence 776666522 12233445555665555555422222111111111111111 1112233344444444444443
Q ss_pred cccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhc
Q 012103 248 SGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELG 327 (471)
Q Consensus 248 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~ 327 (471)
. .......+++++.+++++|.+++..+ ...+++|++|++++|.++. + ..+..+++|+.+++++|.+++.. .+.
T Consensus 188 ~--~~~~~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~~~ 260 (384)
T d2omza2 188 S--DISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--PLS 260 (384)
T ss_dssp C--CCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--GGT
T ss_pred c--cccccccccccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCC--ccc
Confidence 2 33446677888888888888776543 4556788888888888874 3 35677888999999999888543 367
Q ss_pred CCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEe
Q 012103 328 SWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNII 407 (471)
Q Consensus 328 ~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L 407 (471)
.+++|++++++++.+++ ++ .+..++.++.+.+..|.+.+. ..+..+++++.|++++|++++.. .+..+++|++|
T Consensus 261 ~~~~L~~L~l~~~~l~~-~~-~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L 334 (384)
T d2omza2 261 GLTKLTELKLGANQISN-IS-PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRL 334 (384)
T ss_dssp TCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEE
T ss_pred ccccCCEeeccCcccCC-CC-ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEE
Confidence 78889999999998874 33 366788889999999988752 35778899999999999998543 37788999999
Q ss_pred ecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCc
Q 012103 408 DIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQ 461 (471)
Q Consensus 408 ~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 461 (471)
++++|++++ ++ .+.++++|++|++++|++++..| +.++++|++|+|++|.
T Consensus 335 ~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na 384 (384)
T d2omza2 335 FFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 384 (384)
T ss_dssp ECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred ECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCCc
Confidence 999999985 33 68899999999999999996554 8899999999999884
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.97 E-value=6.7e-28 Score=232.09 Aligned_cols=340 Identities=26% Similarity=0.310 Sum_probs=255.4
Q ss_pred CCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEc
Q 012103 65 SFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYL 144 (471)
Q Consensus 65 ~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l 144 (471)
..+++|++++++++ .+. .+..+++|++|++++|++++.. .++++++|++|++++|.+.+.. .+.++++|+.|++
T Consensus 44 ~~l~~L~l~~~~I~-~l~--gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~-~l~~l~~L~~L~~ 117 (384)
T d2omza2 44 DQVTTLQADRLGIK-SID--GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTL 117 (384)
T ss_dssp TTCCEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCC-Ccc--ccccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc-ccccccccccccc
Confidence 46899999999988 453 3889999999999999998643 3999999999999999998654 5889999999999
Q ss_pred cCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCC
Q 012103 145 NLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNIS 224 (471)
Q Consensus 145 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 224 (471)
+++.+++..+ ......+.......+.+.... + .......+........ .....+...+.........+...
T Consensus 118 ~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 188 (384)
T d2omza2 118 FNNQITDIDP---LKNLTNLNRLELSSNTISDIS-A--LSGLTSLQQLSFGNQV---TDLKPLANLTTLERLDISSNKVS 188 (384)
T ss_dssp CSSCCCCCGG---GTTCTTCSEEEEEEEEECCCG-G--GTTCTTCSEEEEEESC---CCCGGGTTCTTCCEEECCSSCCC
T ss_pred cccccccccc---ccccccccccccccccccccc-c--cccccccccccccccc---chhhhhccccccccccccccccc
Confidence 9999887643 455667777777776652211 1 1111112221111111 12233445555566666655543
Q ss_pred CcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccC
Q 012103 225 GEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGK 304 (471)
Q Consensus 225 ~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 304 (471)
.......++.++.+++++|.+++..+ +...++|+++++++|.+.. ++.+..+++|+.+++++|.+++..+ +..
T Consensus 189 --~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 261 (384)
T d2omza2 189 --DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLAP--LSG 261 (384)
T ss_dssp --CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred --cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-cchhhcccccchhccccCccCCCCc--ccc
Confidence 34556778888899998888875443 4567889999999988874 4466778889999999998885433 677
Q ss_pred CCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEE
Q 012103 305 FKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFR 384 (471)
Q Consensus 305 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 384 (471)
+++|++++++++.+.+.. .+..++.++.++++.|.+++ + ..+..+++++.|++++|++.+.. .+..+++|++|+
T Consensus 262 ~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~-~-~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~ 335 (384)
T d2omza2 262 LTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED-I-SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLF 335 (384)
T ss_dssp CTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC-C-GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEE
T ss_pred cccCCEeeccCcccCCCC--cccccccccccccccccccc-c-cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEE
Confidence 889999999999987543 36678889999999998874 3 35777889999999999998653 378899999999
Q ss_pred ccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCC
Q 012103 385 VSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYN 436 (471)
Q Consensus 385 L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n 436 (471)
+++|+++ .++ .+.++++|++|++++|++++..| +.++++|+.|++++|
T Consensus 336 L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 336 FANNKVS-DVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp CCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred CCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 9999998 454 58889999999999999997654 888999999999987
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=7.1e-25 Score=203.90 Aligned_cols=246 Identities=20% Similarity=0.271 Sum_probs=128.4
Q ss_pred CCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccC
Q 012103 212 ELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFK 291 (471)
Q Consensus 212 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~ 291 (471)
++++|++++|+++...+..|.++++|++|++++|.+....|..|.++++|+++++++|+++..+.. ....++.|++.+
T Consensus 32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~--~~~~l~~L~~~~ 109 (305)
T d1xkua_ 32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK--MPKTLQELRVHE 109 (305)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS--CCTTCCEEECCS
T ss_pred CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccc--hhhhhhhhhccc
Confidence 344444444444422222344444444444444444433344444444444444444444432221 123455555555
Q ss_pred CcCccccchhccCCCCCCEEEcccCcCc--ccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccc
Q 012103 292 NQFSGEVPAELGKFKKLVNLSLYTNKLT--GALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGE 369 (471)
Q Consensus 292 n~l~~~~~~~l~~~~~L~~L~L~~n~l~--~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~ 369 (471)
|.+.+..+..+.....+..++...|... ...+..+..+++|+.+++++|.++ .+|..+ +++++.|++++|...+.
T Consensus 110 n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~ 186 (305)
T d1xkua_ 110 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKV 186 (305)
T ss_dssp SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEE
T ss_pred cchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCccc--CCccCEEECCCCcCCCC
Confidence 5555444444444455555555554332 122334455556666666666554 344332 34566666666666655
Q ss_pred cchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhh----
Q 012103 370 IPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEE---- 445 (471)
Q Consensus 370 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~---- 445 (471)
.+..+..++.+++|++++|.+.+..+..+.++++|++|+|++|+++ .+|..+.++++|+.|++++|+|+......
T Consensus 187 ~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~ 265 (305)
T d1xkua_ 187 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 265 (305)
T ss_dssp CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred ChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCc
Confidence 5666666666666666666666555555666666666666666665 34556666666666666666666322222
Q ss_pred --hhcCCCCCEEeccCCcCc
Q 012103 446 --ISKATSLVVIKLNNNQLT 463 (471)
Q Consensus 446 --l~~l~~L~~L~l~~n~~s 463 (471)
.....+|+.|+|++|+++
T Consensus 266 ~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 266 GYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp SCCTTSCCCSEEECCSSSSC
T ss_pred chhcccCCCCEEECCCCcCc
Confidence 233456667777777664
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=2.5e-24 Score=200.13 Aligned_cols=222 Identities=19% Similarity=0.248 Sum_probs=105.6
Q ss_pred CCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEE
Q 012103 138 ELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLE 217 (471)
Q Consensus 138 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 217 (471)
++++|++++|+++...+ ..|.++++|++|++++|.+. ...|..+..+++|++|++++|+++ .+|..+ ...++.|+
T Consensus 32 ~l~~L~Ls~N~i~~l~~-~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~--~~~l~~L~ 106 (305)
T d1xkua_ 32 DTALLDLQNNKITEIKD-GDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELR 106 (305)
T ss_dssp TCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCS-BCCSSC--CTTCCEEE
T ss_pred CCCEEECcCCcCCCcCh-hHhhcccccccccccccccc-ccchhhhhCCCccCEecccCCccC-cCccch--hhhhhhhh
Confidence 33444444444333332 33444444444444444431 111333444444444444444444 222221 23445555
Q ss_pred cccCcCCCcCCccccCCCCCCeEeecccccc--ccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCc
Q 012103 218 LSDNNISGEIPSEIGNLVKLWRLELYNNQLS--GKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFS 295 (471)
Q Consensus 218 L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~ 295 (471)
+.+|.+.+..+..+.....+..+....+... ...+..+..+++|+.+++++|.+...... .+++|++|++++|...
T Consensus 107 ~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~--~~~~L~~L~l~~n~~~ 184 (305)
T d1xkua_ 107 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG--LPPSLTELHLDGNKIT 184 (305)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS--CCTTCSEEECTTSCCC
T ss_pred ccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcc--cCCccCEEECCCCcCC
Confidence 5555554333333334444444544444322 12233445555566666666555432211 2355666666666665
Q ss_pred cccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccc
Q 012103 296 GEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFT 367 (471)
Q Consensus 296 ~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~ 367 (471)
+..+..+..++.++.|++++|.+.+..+..+.++++|++|++++|.++ .+|.++..+++|+.|++++|+++
T Consensus 185 ~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~ 255 (305)
T d1xkua_ 185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 255 (305)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred CCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence 555555555566666666666665554555555555666666655554 44555555555555555555555
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1e-24 Score=200.46 Aligned_cols=250 Identities=17% Similarity=0.117 Sum_probs=139.7
Q ss_pred CCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCC-CCcCccccc-cCCCCCCCCEEEc
Q 012103 212 ELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDAS-TNFLEGDLS-EVRFLTNLVTLQL 289 (471)
Q Consensus 212 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~-~n~~~~~~~-~~~~~~~L~~L~l 289 (471)
++++|+|++|.+++..+..|.+++.|++|++++|.+....+..+..++.++.+... .+.+....+ .++.+++|++|++
T Consensus 33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l 112 (284)
T d1ozna_ 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (284)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence 34444444444443333344444445555554444444444444444455554443 222332222 4555566666666
Q ss_pred cCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccc
Q 012103 290 FKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGE 369 (471)
Q Consensus 290 ~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~ 369 (471)
++|.+....+..+...++|+.+++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.+++++|++++.
T Consensus 113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i 192 (284)
T d1ozna_ 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (284)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccccc
Confidence 66665544444555556666666666666644445555666666666666666655555566666677777777766666
Q ss_pred cchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcC
Q 012103 370 IPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKA 449 (471)
Q Consensus 370 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l 449 (471)
.|..|..+++|++|++++|++.+..+..+..+++|++|++++|++...-+.. .-...++.+....+++....|..+..
T Consensus 193 ~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~~~~~~~~C~~p~~l~g- 270 (284)
T d1ozna_ 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAG- 270 (284)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTT-
T ss_pred ChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccch-HHHHHHHhCcCCCCceEeCCchHHcC-
Confidence 6666777777777777777777666666667777777777777666432210 01122334555556666666665543
Q ss_pred CCCCEEeccCCcCccc
Q 012103 450 TSLVVIKLNNNQLTGK 465 (471)
Q Consensus 450 ~~L~~L~l~~n~~sg~ 465 (471)
....+++.+.++|+
T Consensus 271 --~~l~~l~~~~l~gc 284 (284)
T d1ozna_ 271 --RDLKRLAANDLQGC 284 (284)
T ss_dssp --CBGGGSCGGGSCCC
T ss_pred --CccccCCHHHCCCc
Confidence 44555666666653
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.3e-23 Score=192.96 Aligned_cols=253 Identities=17% Similarity=0.184 Sum_probs=199.4
Q ss_pred cEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEcc-C
Q 012103 214 INLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLF-K 291 (471)
Q Consensus 214 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~-~ 291 (471)
..++.++.+++ .+|..+. ..+++|++++|.+++..+..|.++++|+++++++|.+....+ .+...+.++.+... .
T Consensus 14 ~~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~ 90 (284)
T d1ozna_ 14 VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (284)
T ss_dssp CEEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence 34667777776 6776553 578999999999986666778999999999999999887666 67778888888765 5
Q ss_pred CcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccc
Q 012103 292 NQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIP 371 (471)
Q Consensus 292 n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~ 371 (471)
+.+....+..+.++++|++|++++|.+....+..+....+|+.+++++|.+++..+..+..+++|+.|++++|++.+..+
T Consensus 91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~ 170 (284)
T d1ozna_ 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (284)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccch
Confidence 55665567788889999999999999886666677788889999999999985555667788889999999999988778
Q ss_pred hhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCC
Q 012103 372 ATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATS 451 (471)
Q Consensus 372 ~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 451 (471)
..|..+++|+.+++++|++++..|..|..+++|++|++++|++.+..+..+.++++|+.|++++|.+...-+.. .-...
T Consensus 171 ~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~ 249 (284)
T d1ozna_ 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAW 249 (284)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHH
T ss_pred hhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccch-HHHHH
Confidence 88889999999999999999888888999999999999999999888888999999999999999887543311 01112
Q ss_pred CCEEeccCCcCcccCCCCC
Q 012103 452 LVVIKLNNNQLTGKIPASI 470 (471)
Q Consensus 452 L~~L~l~~n~~sg~ip~~~ 470 (471)
++.+....+++....|..+
T Consensus 250 l~~~~~~~~~~~C~~p~~l 268 (284)
T d1ozna_ 250 LQKFRGSSSEVPCSLPQRL 268 (284)
T ss_dssp HHHCCSEECCCBEEESGGG
T ss_pred HHhCcCCCCceEeCCchHH
Confidence 3344555566666655543
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.2e-22 Score=184.60 Aligned_cols=177 Identities=21% Similarity=0.192 Sum_probs=92.0
Q ss_pred CCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeecc
Q 012103 283 NLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLML 362 (471)
Q Consensus 283 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~ 362 (471)
++++|++++|.+++..+..+.++++|++|++++|.++ .++. +..+++|+.|++++|+++ .++..+..+++|+.|+++
T Consensus 32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~-~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~ 108 (266)
T d1p9ag_ 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108 (266)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECC
T ss_pred CCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc-cccccccccccccccccc-cccccccccccccccccc
Confidence 4455555555554333344445555555555555554 2221 234455555555555554 334444455555555555
Q ss_pred CCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccc
Q 012103 363 QNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGEL 442 (471)
Q Consensus 363 ~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 442 (471)
+|.+.+..+..+..+.+++.|++++|.+....+..+..++.++.+++++|++++..+..+..+++|+.|+|++|+|+ .+
T Consensus 109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~l 187 (266)
T d1p9ag_ 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 187 (266)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred ccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-cc
Confidence 55555444444555555555555555555433444445555555555555555555555555555555555555555 55
Q ss_pred hhhhhcCCCCCEEeccCCcCc
Q 012103 443 PEEISKATSLVVIKLNNNQLT 463 (471)
Q Consensus 443 p~~l~~l~~L~~L~l~~n~~s 463 (471)
|+.+..+++|+.|+|++|++.
T Consensus 188 p~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 188 PKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp CTTTTTTCCCSEEECCSCCBC
T ss_pred ChhHCCCCCCCEEEecCCCCC
Confidence 555555555555555555543
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=5.2e-22 Score=180.29 Aligned_cols=200 Identities=21% Similarity=0.187 Sum_probs=127.5
Q ss_pred CCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEc
Q 012103 210 LTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQL 289 (471)
Q Consensus 210 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l 289 (471)
...+.+++.++++++ .+|..+. +.+++|++++|.+++..+..|.++++|++|++++|.++. ++.++.+++|++|++
T Consensus 9 ~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~~~~~l~~L~~L~L 84 (266)
T d1p9ag_ 9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVDGTLPVLGTLDL 84 (266)
T ss_dssp STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECCSCCTTCCEEEC
T ss_pred cCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-ccccccccccccccc
Confidence 334445555555555 3444332 345666666666654444455666666666666666553 233455666667777
Q ss_pred cCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccc
Q 012103 290 FKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGE 369 (471)
Q Consensus 290 ~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~ 369 (471)
++|+++ ..+..+..+++|+.|++++|.+.+..+..+..+.+++.|++++|.++...+..+..+++++.+++++|++++.
T Consensus 85 s~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~ 163 (266)
T d1p9ag_ 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (266)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred cccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc
Confidence 666666 3345566667777777777776655555566667777777777777644444555667777777777777766
Q ss_pred cchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccc
Q 012103 370 IPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIE 415 (471)
Q Consensus 370 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~ 415 (471)
.+..|..+++|++|+|++|+++ .+|..+..+++|+.|+|++|++.
T Consensus 164 ~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence 6666777777777777777777 67777777777777777777765
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.84 E-value=5.3e-18 Score=159.97 Aligned_cols=313 Identities=26% Similarity=0.328 Sum_probs=149.9
Q ss_pred CEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEcc
Q 012103 66 FVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLN 145 (471)
Q Consensus 66 ~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~ 145 (471)
++++|||++++++ .+|. ..++|++|++++|+++ .+|.. ..+|+.|++++|+++... .+. +.|++|+++
T Consensus 39 ~l~~LdLs~~~L~-~lp~----~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l~-~lp--~~L~~L~L~ 106 (353)
T d1jl5a_ 39 QAHELELNNLGLS-SLPE----LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKALS-DLP--PLLEYLGVS 106 (353)
T ss_dssp TCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCCC-SCC--TTCCEEECC
T ss_pred CCCEEEeCCCCCC-CCCC----CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchhh-hhc--ccccccccc
Confidence 4667888888876 5663 2467788888887776 45543 346777777777766322 111 346666666
Q ss_pred CCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCC
Q 012103 146 LSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISG 225 (471)
Q Consensus 146 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 225 (471)
+|.+... | .++.+++|++|+++++.+.. .+. ....+..+.+..+... ....+..++.++.+++++|....
T Consensus 107 ~n~l~~l-p--~~~~l~~L~~L~l~~~~~~~--~~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~ 176 (353)
T d1jl5a_ 107 NNQLEKL-P--ELQNSSFLKIIDVDNNSLKK--LPD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKK 176 (353)
T ss_dssp SSCCSSC-C--CCTTCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSS
T ss_pred ccccccc-c--chhhhccceeeccccccccc--ccc---ccccccchhhcccccc--ccccccccccceecccccccccc
Confidence 6666543 2 24556666666666655421 111 1234444444443332 12234444555555555554431
Q ss_pred cCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCC
Q 012103 226 EIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKF 305 (471)
Q Consensus 226 ~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 305 (471)
.+.. ....+.+.. .++.+. ..+....++.++.+++++|... ..+. ..
T Consensus 177 -~~~~---~~~~~~l~~------------------------~~~~~~-~~~~~~~l~~L~~l~l~~n~~~-~~~~---~~ 223 (353)
T d1jl5a_ 177 -LPDL---PLSLESIVA------------------------GNNILE-ELPELQNLPFLTTIYADNNLLK-TLPD---LP 223 (353)
T ss_dssp -CCCC---CTTCCEEEC------------------------CSSCCS-SCCCCTTCTTCCEEECCSSCCS-SCCS---CC
T ss_pred -cccc---ccccccccc------------------------cccccc-cccccccccccccccccccccc-cccc---cc
Confidence 1111 111222222 222221 2223334445555555554443 1221 12
Q ss_pred CCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEc
Q 012103 306 KKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRV 385 (471)
Q Consensus 306 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L 385 (471)
.++..+.+.++.+.. .+. ....+...++..+.+.+ ++. -.......++..+.+.+. ...+++|++|++
T Consensus 224 ~~l~~~~~~~~~~~~-~~~---~~~~l~~~~~~~~~~~~-l~~---l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~L 291 (353)
T d1jl5a_ 224 PSLEALNVRDNYLTD-LPE---LPQSLTFLDVSENIFSG-LSE---LPPNLYYLNASSNEIRSL----CDLPPSLEELNV 291 (353)
T ss_dssp TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSE-ESC---CCTTCCEEECCSSCCSEE----CCCCTTCCEEEC
T ss_pred ccccccccccccccc-ccc---ccccccccccccccccc-ccc---ccchhcccccccCccccc----cccCCCCCEEEC
Confidence 344555555554432 111 12234444444443331 110 012233444444444321 122456666666
Q ss_pred cCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEec
Q 012103 386 SNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKL 457 (471)
Q Consensus 386 ~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 457 (471)
++|+++ .+|.. +++|+.|++++|+++ .+|. .+++|+.|++++|+++ .+|+.. .+|+.|.+
T Consensus 292 s~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~---~~~~L~~L~L~~N~L~-~lp~~~---~~L~~L~~ 351 (353)
T d1jl5a_ 292 SNNKLI-ELPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR-EFPDIP---ESVEDLRM 351 (353)
T ss_dssp CSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-SCCCCC---TTCCEEEC
T ss_pred CCCccC-ccccc---cCCCCEEECCCCcCC-cccc---ccCCCCEEECcCCcCC-CCCccc---cccCeeEC
Confidence 666666 45532 345666666666665 3342 2345666666666665 455322 23555544
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=3.1e-21 Score=189.23 Aligned_cols=109 Identities=20% Similarity=0.165 Sum_probs=75.5
Q ss_pred CEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCc----cccccccCCCCCCEEeCCCCcCCccC----C-CCC-C
Q 012103 66 FVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYG----EISKDLNNCVKLQYLDLGNNVFSGSF----P-EIS-S 135 (471)
Q Consensus 66 ~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~----~-~l~-~ 135 (471)
++++||++++++++.--...+..++++++|+|++|.++. .+...+..+++|++|||++|.++... . .+. .
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 588999999998854323335678899999999998873 34556778899999999999886321 1 222 3
Q ss_pred CCCCCEEEccCCCCcccCC---cccccCCCCCcEEEccCCCC
Q 012103 136 LNELQHLYLNLSGFSGVFP---WMSLGNMTNLVSLSVGDNPF 174 (471)
Q Consensus 136 l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~~ 174 (471)
..+|++|++++|+++...- ...+..+++|++|++++|.+
T Consensus 83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i 124 (460)
T d1z7xw1 83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 124 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred CCCCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence 3568888888887764311 03456677777777777766
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.82 E-value=1.3e-17 Score=157.25 Aligned_cols=200 Identities=24% Similarity=0.287 Sum_probs=135.6
Q ss_pred CCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCC-CCCCEEeCCCCcCCccCCCCCCCCCCCEE
Q 012103 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNC-VKLQYLDLGNNVFSGSFPEISSLNELQHL 142 (471)
Q Consensus 64 ~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~l~~l~~L~~L 142 (471)
..++++|++++++++ .+|.. +.+|+.|++++|.++. ++ .+ +.|++|++++|.+... |.+..+++|++|
T Consensus 57 ~~~L~~L~Ls~N~l~-~lp~~----~~~L~~L~l~~n~l~~-l~----~lp~~L~~L~L~~n~l~~l-p~~~~l~~L~~L 125 (353)
T d1jl5a_ 57 PPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKA-LS----DLPPLLEYLGVSNNQLEKL-PELQNSSFLKII 125 (353)
T ss_dssp CTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSC-CC----SCCTTCCEEECCSSCCSSC-CCCTTCTTCCEE
T ss_pred CCCCCEEECCCCCCc-ccccc----hhhhhhhhhhhcccch-hh----hhccccccccccccccccc-cchhhhccceee
Confidence 457999999999998 77753 5689999999999863 22 23 4699999999999854 567889999999
Q ss_pred EccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCc
Q 012103 143 YLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNN 222 (471)
Q Consensus 143 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 222 (471)
+++++.+..... ....+..+.+..+... ....+..++.++.++++.|.... .+.. ....+.+...++.
T Consensus 126 ~l~~~~~~~~~~-----~~~~l~~l~~~~~~~~---~~~~l~~l~~l~~L~l~~n~~~~-~~~~---~~~~~~l~~~~~~ 193 (353)
T d1jl5a_ 126 DVDNNSLKKLPD-----LPPSLEFIAAGNNQLE---ELPELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNI 193 (353)
T ss_dssp ECCSSCCSCCCC-----CCTTCCEEECCSSCCS---SCCCCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSC
T ss_pred cccccccccccc-----ccccccchhhcccccc---ccccccccccceecccccccccc-cccc---ccccccccccccc
Confidence 999998875433 3567788888777652 24557788999999999988773 2221 2345566666655
Q ss_pred CCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCc
Q 012103 223 ISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFS 295 (471)
Q Consensus 223 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~ 295 (471)
+. .++ .+..++.++.+++++|.... .+. ...++..+.+..+.+.... .....+...++..+.+.
T Consensus 194 ~~-~~~-~~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~ 257 (353)
T d1jl5a_ 194 LE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDLP---ELPQSLTFLDVSENIFS 257 (353)
T ss_dssp CS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCS
T ss_pred cc-ccc-cccccccccccccccccccc-ccc---ccccccccccccccccccc---ccccccccccccccccc
Confidence 54 333 35667788888888776652 322 2345666666666554322 12234455555544443
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.78 E-value=4.1e-18 Score=150.38 Aligned_cols=187 Identities=19% Similarity=0.290 Sum_probs=111.6
Q ss_pred CCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEec
Q 012103 258 LTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDV 337 (471)
Q Consensus 258 l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 337 (471)
+.+|+.|++.+|.++.. +.+..+++|++|++++|.+++..+ +..+++++++++++|.++ .++ .+..+++|+.+++
T Consensus 40 l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l 114 (227)
T d1h6ua2 40 LDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDL 114 (227)
T ss_dssp HHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEEC
T ss_pred cCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccc-ccc-ccccccccccccc
Confidence 34444444444444322 334444555555555555543222 455555666666655554 222 3455666666666
Q ss_pred cCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccc
Q 012103 338 SENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGP 417 (471)
Q Consensus 338 ~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~ 417 (471)
+++...+. ..+...+.++.+.++.+.+.... .+..+++|+.|++++|.+.+.. .+.++++|++|++++|++++.
T Consensus 115 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l 188 (227)
T d1h6ua2 115 TSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI 188 (227)
T ss_dssp TTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC
T ss_pred cccccccc--chhccccchhhhhchhhhhchhh--hhccccccccccccccccccch--hhcccccceecccCCCccCCC
Confidence 66655422 22344556666677666665332 3556677777777777776332 366778888888888887753
Q ss_pred cchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccC
Q 012103 418 ITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNN 459 (471)
Q Consensus 418 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 459 (471)
+ .+.++++|+.|++++|++++ ++ .+.++++|+.|++++
T Consensus 189 -~-~l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 189 -S-PLASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTN 226 (227)
T ss_dssp -G-GGGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEE
T ss_pred -h-hhcCCCCCCEEECcCCcCCC-Cc-ccccCCCCCEEEeeC
Confidence 2 37778888888888888874 44 377888888888864
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=2.4e-20 Score=182.72 Aligned_cols=375 Identities=16% Similarity=0.106 Sum_probs=255.6
Q ss_pred CCcEEeCCCCCCCcc-ccccccCCCCCCEEeCCCCcCCcc----CC-CCCCCCCCCEEEccCCCCcccCC---ccccc-C
Q 012103 91 ALHKLSLGFNSLYGE-ISKDLNNCVKLQYLDLGNNVFSGS----FP-EISSLNELQHLYLNLSGFSGVFP---WMSLG-N 160 (471)
Q Consensus 91 ~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~----~~-~l~~l~~L~~L~l~~n~l~~~~~---~~~~~-~ 160 (471)
+|++||++++++++. +...+..++++|+|+|++|.++.. +. .+..+++|++|++++|.++.... ...+. .
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 589999999999863 344567789999999999998742 12 46788999999999998863211 01222 3
Q ss_pred CCCCcEEEccCCCCCCCC---CCccccCCCCCCEEEcccccCcccCCccc----c-CCCCCcEEEcccCcCCCcC----C
Q 012103 161 MTNLVSLSVGDNPFDPTP---FPDQVVKLNKLNWLYLTNCSIDGQIPVEI----G-NLTELINLELSDNNISGEI----P 228 (471)
Q Consensus 161 l~~L~~L~l~~n~~~~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~~~l----~-~l~~L~~L~L~~n~l~~~~----p 228 (471)
..+|++|++++|.++... ++..+..+++|++|++++|.+.......+ . ................... .
T Consensus 83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (460)
T d1z7xw1 83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 162 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence 357999999999885322 34567788999999999998864221111 1 2223444444444332111 1
Q ss_pred ccccCCCCCCeEeeccccccccC----Cccc-cCCCCCCEEeCCCCcCcccc-----ccCCCCCCCCEEEccCCcCccc-
Q 012103 229 SEIGNLVKLWRLELYNNQLSGKL----PVGL-RNLTNLANFDASTNFLEGDL-----SEVRFLTNLVTLQLFKNQFSGE- 297 (471)
Q Consensus 229 ~~~~~l~~L~~L~l~~n~l~~~~----~~~l-~~l~~L~~L~l~~n~~~~~~-----~~~~~~~~L~~L~l~~n~l~~~- 297 (471)
..+.....++.+.++++...... ...+ ........+++..+.+.... ..+...+.++.+++.+|.+...
T Consensus 163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~ 242 (460)
T d1z7xw1 163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242 (460)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence 22334567888888877664211 1111 23345677888887664321 1344568899999999987532
Q ss_pred ----cchhccCCCCCCEEEcccCcCccc----CchhhcCCCCCCEEeccCCcccccCchhh-----cCCCCCceeeccCC
Q 012103 298 ----VPAELGKFKKLVNLSLYTNKLTGA----LPQELGSWAEFDFIDVSENLLTGPIPPDM-----CKRGTMRDLLMLQN 364 (471)
Q Consensus 298 ----~~~~l~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~p~~~-----~~~~~L~~L~l~~n 364 (471)
..........++.+++++|.+... ....+...+.++.+++++|.++......+ .....|+.++++++
T Consensus 243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~ 322 (460)
T d1z7xw1 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 322 (460)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc
Confidence 233445567899999999988643 23345567899999999999864322222 23468999999999
Q ss_pred ccccccch----hhhcCCCCcEEEccCCcCccc----cccccc-CCCCCCEeecccCccccc----cchhhhccCCCCee
Q 012103 365 KFTGEIPA----TYANCLTLQRFRVSNNSLKGT----VPAGIW-GLPEVNIIDIALNQIEGP----ITKDIENAKALNLL 431 (471)
Q Consensus 365 ~~~~~~~~----~~~~~~~L~~L~L~~n~~~~~----~~~~~~-~~~~L~~L~ls~n~~~~~----~~~~~~~l~~L~~L 431 (471)
.++..... .+..+++|++|+|++|.+++. ++..+. ..+.|++|++++|.+++. +++.+..+++|++|
T Consensus 323 ~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L 402 (460)
T d1z7xw1 323 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 402 (460)
T ss_dssp CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred chhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEE
Confidence 88865333 345677999999999999753 334443 467899999999999863 45567778999999
Q ss_pred eCCCCcCcccchhhhh-----cCCCCCEEeccCCcCccc
Q 012103 432 FAEYNRLSGELPEEIS-----KATSLVVIKLNNNQLTGK 465 (471)
Q Consensus 432 ~l~~n~l~~~~p~~l~-----~l~~L~~L~l~~n~~sg~ 465 (471)
++++|+|+......+. +...|+.|++.+|.+...
T Consensus 403 ~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~ 441 (460)
T d1z7xw1 403 DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 441 (460)
T ss_dssp ECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHH
Confidence 9999999865554443 234799999999999854
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.77 E-value=4.4e-18 Score=150.24 Aligned_cols=188 Identities=25% Similarity=0.288 Sum_probs=93.0
Q ss_pred cCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCcE
Q 012103 87 CQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVS 166 (471)
Q Consensus 87 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 166 (471)
+.+.+|+.|++.+|.++. + ..+.++++|++|++++|.+++.. .+..+++|+++++++|.++..
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~~~~i-------------- 100 (227)
T d1h6ua2 38 ADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNV-------------- 100 (227)
T ss_dssp HHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCCSCC--------------
T ss_pred HHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeeccc-ccccccccccccccccccccc--------------
Confidence 334455555555555442 2 23445555555555555544322 234444444444444443321
Q ss_pred EEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeecccc
Q 012103 167 LSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQ 246 (471)
Q Consensus 167 L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 246 (471)
..+..+++|+.++++++...+. ..+...+.++.+.++.+.+... ..+.++++|++|++++|.
T Consensus 101 --------------~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~ 162 (227)
T d1h6ua2 101 --------------SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQ 162 (227)
T ss_dssp --------------GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSC
T ss_pred --------------cccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccc
Confidence 2334444555555544444321 2233445555555555554422 224445556666665555
Q ss_pred ccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcc
Q 012103 247 LSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLY 314 (471)
Q Consensus 247 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~ 314 (471)
+... ..++++++|++|++++|.+++ ++.++.+++|++|++++|++++. + .+.++++|++|+++
T Consensus 163 ~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 163 VSDL--TPLANLSKLTTLKADDNKISD-ISPLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLT 225 (227)
T ss_dssp CCCC--GGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEE
T ss_pred cccc--hhhcccccceecccCCCccCC-ChhhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEee
Confidence 5422 225556666666666666553 33455566666666666666632 2 25566677777665
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=6.9e-18 Score=150.55 Aligned_cols=198 Identities=17% Similarity=0.128 Sum_probs=117.4
Q ss_pred EEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC--CCCCCCCCCEEEccC
Q 012103 69 EIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP--EISSLNELQHLYLNL 146 (471)
Q Consensus 69 ~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~l~~l~~L~~L~l~~ 146 (471)
.++.++.+++ .+|.. + .+++++|++++|.++...+.+|.++++|++|++++|.+...++ .+.++++++++.+..
T Consensus 12 ~i~c~~~~l~-~iP~~-l--~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~ 87 (242)
T d1xwdc1 12 VFLCQESKVT-EIPSD-L--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87 (242)
T ss_dssp EEEEESCSCS-SCCSC-S--CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred EEEEeCCCCC-CcCCC-C--CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence 3444556666 67654 2 2578889999988875555578888899999998888876544 567788888887764
Q ss_pred -CCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCC-CCcEEEcccCcCC
Q 012103 147 -SGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLT-ELINLELSDNNIS 224 (471)
Q Consensus 147 -n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~ 224 (471)
+.+....+ ..+.++++|+++++++|.+........+..+..++.+...++.+....+..+..++ .++.+++++|.++
T Consensus 88 ~n~l~~~~~-~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~ 166 (242)
T d1xwdc1 88 ANNLLYINP-EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 166 (242)
T ss_dssp CTTCCEECT-TSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred ccccccccc-ccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence 45555555 66778888888888888774333223334445555555555555544444444443 5666666666665
Q ss_pred CcCCccccCCCCCCeE-eeccccccccCCccccCCCCCCEEeCCCCcCc
Q 012103 225 GEIPSEIGNLVKLWRL-ELYNNQLSGKLPVGLRNLTNLANFDASTNFLE 272 (471)
Q Consensus 225 ~~~p~~~~~l~~L~~L-~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 272 (471)
. ++.......+++++ .+.+|.++...+..|.++++|++|++++|+++
T Consensus 167 ~-i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~ 214 (242)
T d1xwdc1 167 E-IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 214 (242)
T ss_dssp E-ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred c-cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC
Confidence 3 32222233333333 33444454322233444555555555555444
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.6e-17 Score=148.06 Aligned_cols=219 Identities=10% Similarity=0.070 Sum_probs=106.9
Q ss_pred cEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCc
Q 012103 214 INLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQ 293 (471)
Q Consensus 214 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~ 293 (471)
+.++.++..++ .+|..+. +++++|++++|.++...+..|.++++|++|++++|.+...++
T Consensus 11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~----------------- 70 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE----------------- 70 (242)
T ss_dssp SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEEC-----------------
T ss_pred CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceee-----------------
Confidence 34555555554 4444332 345555555555553333344455555555555544433222
Q ss_pred CccccchhccCCCCCCEEEccc-CcCcccCchhhcCCCCCCEEeccCCcccccCch-hhcCCCCCceeeccCCccccccc
Q 012103 294 FSGEVPAELGKFKKLVNLSLYT-NKLTGALPQELGSWAEFDFIDVSENLLTGPIPP-DMCKRGTMRDLLMLQNKFTGEIP 371 (471)
Q Consensus 294 l~~~~~~~l~~~~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~-~~~~~~~L~~L~l~~n~~~~~~~ 371 (471)
+..+..++.++++.+.. |.+....+..+.++++|+++++++|.++...+. .+.....+..+...++.+....+
T Consensus 71 -----~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~ 145 (242)
T d1xwdc1 71 -----ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 145 (242)
T ss_dssp -----SSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECT
T ss_pred -----ccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccc
Confidence 22344444555544432 334433344445555555555555554421111 11223333334444444544334
Q ss_pred hhhhcCC-CCcEEEccCCcCcccccccccCCCCCCEe-ecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcC
Q 012103 372 ATYANCL-TLQRFRVSNNSLKGTVPAGIWGLPEVNII-DIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKA 449 (471)
Q Consensus 372 ~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~~~L~~L-~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l 449 (471)
..+..++ .++.+++.+|+++ .++......++++.+ ++++|+++...+..|.++++|+.|++++|+++...+..+.++
T Consensus 146 ~~~~~~~~~l~~L~l~~n~l~-~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l 224 (242)
T d1xwdc1 146 NSFVGLSFESVILWLNKNGIQ-EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL 224 (242)
T ss_dssp TSSTTSBSSCEEEECCSSCCC-EECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTC
T ss_pred cccccccccceeeeccccccc-ccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCC
Confidence 4444443 5666777777776 333333344444433 456666665444556777777777777777774334445555
Q ss_pred CCCCEEecc
Q 012103 450 TSLVVIKLN 458 (471)
Q Consensus 450 ~~L~~L~l~ 458 (471)
++|+.+++.
T Consensus 225 ~~L~~l~~~ 233 (242)
T d1xwdc1 225 KKLRARSTY 233 (242)
T ss_dssp CEEESSSEE
T ss_pred cccccCcCC
Confidence 555555443
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.72 E-value=1.1e-16 Score=139.15 Aligned_cols=164 Identities=16% Similarity=0.261 Sum_probs=105.7
Q ss_pred CCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeec
Q 012103 282 TNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLM 361 (471)
Q Consensus 282 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l 361 (471)
.+|++|++++|.++.. + .+..+++|++|++++|++++ ++ .+..+++|++|++++|+++ .+| .+..+++|+.|++
T Consensus 46 ~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l 119 (210)
T d1h6ta2 46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSL 119 (210)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEEC
T ss_pred cCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc-ccc-ccccccccccccc
Confidence 3455555555555422 1 24556666666666666653 22 2455666667777666665 344 3566667777777
Q ss_pred cCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCccc
Q 012103 362 LQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGE 441 (471)
Q Consensus 362 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 441 (471)
++|.+.. + ..+..++.++.+++++|.+++. ..+..+++|+++++++|++++.. .+.++++|+.|++++|+++ .
T Consensus 120 ~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~-~ 192 (210)
T d1h6ta2 120 EHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHIS-D 192 (210)
T ss_dssp TTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-B
T ss_pred ccccccc-c-cccccccccccccccccccccc--ccccccccccccccccccccccc--cccCCCCCCEEECCCCCCC-C
Confidence 7776652 2 3466677777777777777632 23556777888888888877532 3677888888888888887 4
Q ss_pred chhhhhcCCCCCEEeccC
Q 012103 442 LPEEISKATSLVVIKLNN 459 (471)
Q Consensus 442 ~p~~l~~l~~L~~L~l~~ 459 (471)
+| .+..+++|+.|+|++
T Consensus 193 l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 193 LR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp CG-GGTTCTTCSEEEEEE
T ss_pred Ch-hhcCCCCCCEEEccC
Confidence 55 577888888888764
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.72 E-value=6.4e-17 Score=140.60 Aligned_cols=79 Identities=35% Similarity=0.436 Sum_probs=33.1
Q ss_pred ccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCE
Q 012103 207 IGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVT 286 (471)
Q Consensus 207 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~ 286 (471)
+..+++++.+++++|.+++ +..+..+++|+++++++|.+++ ++ .+.++++|++|++++|.++. ++.+..+++|++
T Consensus 130 l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~ 204 (210)
T d1h6ta2 130 LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISD-LRALAGLKNLDV 204 (210)
T ss_dssp GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCB-CGGGTTCTTCSE
T ss_pred ccccccccccccccccccc--cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCCC-ChhhcCCCCCCE
Confidence 3334444444444444431 1123334444444444444432 11 14444444444444444432 233444455555
Q ss_pred EEcc
Q 012103 287 LQLF 290 (471)
Q Consensus 287 L~l~ 290 (471)
|+++
T Consensus 205 L~Ls 208 (210)
T d1h6ta2 205 LELF 208 (210)
T ss_dssp EEEE
T ss_pred EEcc
Confidence 5543
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.72 E-value=1.3e-16 Score=137.33 Aligned_cols=161 Identities=26% Similarity=0.404 Sum_probs=81.6
Q ss_pred CCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEE
Q 012103 88 QLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSL 167 (471)
Q Consensus 88 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 167 (471)
.++++++|+++++.+... ..+..+++|++|++++|.+++..+ +.++++|++|++++|.+... ..+.++++|+.|
T Consensus 38 ~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~---~~l~~l~~L~~L 111 (199)
T d2omxa2 38 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADI---TPLANLTNLTGL 111 (199)
T ss_dssp HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC---GGGTTCTTCSEE
T ss_pred HhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc-ccCCcccccccccccccccc---cccccccccccc
Confidence 345556666666655421 234555666666666666554332 55555566666655555433 234555556666
Q ss_pred EccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccc
Q 012103 168 SVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQL 247 (471)
Q Consensus 168 ~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 247 (471)
+++++.... ...+..+++|+.|++++|.+.. + +.+..+++|+.|++.+|.+++ ++ .++++++|++|++++|++
T Consensus 112 ~l~~~~~~~---~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i 184 (199)
T d2omxa2 112 TLFNNQITD---IDPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKV 184 (199)
T ss_dssp ECCSSCCCC---CGGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCC
T ss_pred ccccccccc---ccccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCC
Confidence 665555421 2234455555555555555542 2 234555555555555555543 22 244555555555555555
Q ss_pred cccCCccccCCCCCCE
Q 012103 248 SGKLPVGLRNLTNLAN 263 (471)
Q Consensus 248 ~~~~~~~l~~l~~L~~ 263 (471)
++ ++ .+.++++|++
T Consensus 185 ~~-i~-~l~~L~~L~~ 198 (199)
T d2omxa2 185 SD-IS-VLAKLTNLES 198 (199)
T ss_dssp CC-CG-GGGGCTTCSE
T ss_pred CC-Cc-cccCCCCCCc
Confidence 42 22 2444444444
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.71 E-value=2.1e-16 Score=136.03 Aligned_cols=159 Identities=19% Similarity=0.298 Sum_probs=85.8
Q ss_pred CCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeecc
Q 012103 283 NLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLML 362 (471)
Q Consensus 283 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~ 362 (471)
++++|++++|.+.. + +.+..+++|++|++++|++++. + .+.++++|++|++++|.+. .++ .+..++.|+.++++
T Consensus 41 ~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~-~-~l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~ 114 (199)
T d2omxa2 41 QVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLF 114 (199)
T ss_dssp TCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECC
T ss_pred CCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCc-c-cccCCcccccccccccccc-ccc-cccccccccccccc
Confidence 34444444444431 1 1234445555555555555432 2 1445555555555555554 232 24555566666666
Q ss_pred CCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccc
Q 012103 363 QNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGEL 442 (471)
Q Consensus 363 ~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 442 (471)
++..... ..+..+++|+.+++++|++. .++ .+..+++|+.|++++|++++.. .+.++++|+.|++++|+++. +
T Consensus 115 ~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~-i 187 (199)
T d2omxa2 115 NNQITDI--DPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSD-I 187 (199)
T ss_dssp SSCCCCC--GGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-C
T ss_pred ccccccc--cccchhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCC-C
Confidence 5555432 23455666666666666665 233 3556666667777766666432 35666777777777777663 3
Q ss_pred hhhhhcCCCCCEE
Q 012103 443 PEEISKATSLVVI 455 (471)
Q Consensus 443 p~~l~~l~~L~~L 455 (471)
+ .+.++++|++|
T Consensus 188 ~-~l~~L~~L~~L 199 (199)
T d2omxa2 188 S-VLAKLTNLESL 199 (199)
T ss_dssp G-GGGGCTTCSEE
T ss_pred c-cccCCCCCCcC
Confidence 3 46666666654
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.70 E-value=3.9e-17 Score=139.90 Aligned_cols=172 Identities=15% Similarity=0.185 Sum_probs=125.3
Q ss_pred CEEEccCCcCccccchhccCCCCCCEEEcccCcCcccC-chhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccC
Q 012103 285 VTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGAL-PQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQ 363 (471)
Q Consensus 285 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~ 363 (471)
+.++.++++++ .+|..+. +++++|+|++|.+++.+ +..+.++++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~ 87 (192)
T d1w8aa_ 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence 46677777776 5565442 57788888888886544 44567778888888888888777777777788888888888
Q ss_pred CccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccch
Q 012103 364 NKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELP 443 (471)
Q Consensus 364 n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 443 (471)
|++....+..|.++++|++|+|++|++++..+..|..+++|++++|++|.+.......+ -...++.+.+..+.+....|
T Consensus 88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p 166 (192)
T d1w8aa_ 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSS
T ss_pred ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeEeCCC
Confidence 88887777778888888888888888886667778888888888888888875432211 11235566777787776667
Q ss_pred hhhhcCCCCCEEeccCCcCc
Q 012103 444 EEISKATSLVVIKLNNNQLT 463 (471)
Q Consensus 444 ~~l~~l~~L~~L~l~~n~~s 463 (471)
..+ ..++.++|+.|.+.
T Consensus 167 ~~l---~~~~l~~L~~n~l~ 183 (192)
T d1w8aa_ 167 SKV---RDVQIKDLPHSEFK 183 (192)
T ss_dssp TTT---TTSBGGGSCTTTCC
T ss_pred hhh---cCCEeeecCHhhCc
Confidence 544 45677788888887
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=9.1e-17 Score=146.46 Aligned_cols=209 Identities=17% Similarity=0.158 Sum_probs=106.0
Q ss_pred CCCCEEeCCCCcCcccc-c-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccC-cCccc-CchhhcCCCCCCE
Q 012103 259 TNLANFDASTNFLEGDL-S-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTN-KLTGA-LPQELGSWAEFDF 334 (471)
Q Consensus 259 ~~L~~L~l~~n~~~~~~-~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n-~l~~~-~~~~~~~~~~L~~ 334 (471)
.+|++|+++++.+.... . .+..+++|++|+++++.+++..+..++.+++|++|++++| .+++. +......+++|++
T Consensus 46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~ 125 (284)
T d2astb2 46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 125 (284)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence 34555555555443321 1 3445556666666666555555555555666666666653 33321 1122334566666
Q ss_pred EeccCCc-cccc-Cchhh-cCCCCCceeeccCC--ccccc-cchhhhcCCCCcEEEccCC-cCcccccccccCCCCCCEe
Q 012103 335 IDVSENL-LTGP-IPPDM-CKRGTMRDLLMLQN--KFTGE-IPATYANCLTLQRFRVSNN-SLKGTVPAGIWGLPEVNII 407 (471)
Q Consensus 335 L~L~~n~-l~~~-~p~~~-~~~~~L~~L~l~~n--~~~~~-~~~~~~~~~~L~~L~L~~n-~~~~~~~~~~~~~~~L~~L 407 (471)
|+++++. ++.. +...+ ..+++|+.|+++++ .++.. +......+++|++|++++| .+++.....+..+++|++|
T Consensus 126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L 205 (284)
T d2astb2 126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 205 (284)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence 6666542 3211 11112 22356666666653 23221 2223345666777776664 3555555556666667777
Q ss_pred ecccC-ccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCcccCCCCC
Q 012103 408 DIALN-QIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470 (471)
Q Consensus 408 ~ls~n-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip~~~ 470 (471)
++++| .+++.....+.++++|+.|+++++--.+.++.....+++|+ +..+++++..|..+
T Consensus 206 ~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~ 266 (284)
T d2astb2 206 SLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTI 266 (284)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSC
T ss_pred ECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---ccCccCCCCCCCcc
Confidence 77663 45555555566666777777766622222332233444443 45566665544443
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.67 E-value=5.7e-17 Score=138.84 Aligned_cols=159 Identities=16% Similarity=0.171 Sum_probs=127.3
Q ss_pred CCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccC-chhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEcc
Q 012103 308 LVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPI-PPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVS 386 (471)
Q Consensus 308 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 386 (471)
.++++.+++.++ .+|..+. +++++|+|++|.+++.+ +..+..+++|+.|++++|++....+..+..+++|++|+++
T Consensus 10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls 86 (192)
T d1w8aa_ 10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence 457889999998 6776553 58999999999997655 4556788999999999999998888899999999999999
Q ss_pred CCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCcccC
Q 012103 387 NNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKI 466 (471)
Q Consensus 387 ~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg~i 466 (471)
+|+++...+..|.++++|++|+|++|++++..+..|..+++|+++++++|.+....+.... ...++...+..|.+....
T Consensus 87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~-~~~l~~~~l~~~~~~c~~ 165 (192)
T d1w8aa_ 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGA 165 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHCCSGGGCBBCS
T ss_pred cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHH-hhhhhhhcccCCCeEeCC
Confidence 9999977777889999999999999999988888899999999999999988754332211 122455667777777777
Q ss_pred CCCC
Q 012103 467 PASI 470 (471)
Q Consensus 467 p~~~ 470 (471)
|..+
T Consensus 166 p~~l 169 (192)
T d1w8aa_ 166 PSKV 169 (192)
T ss_dssp STTT
T ss_pred Chhh
Confidence 7654
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=7.2e-16 Score=140.41 Aligned_cols=199 Identities=14% Similarity=0.151 Sum_probs=151.0
Q ss_pred CEEeCCCCcCccccccCCCCCCCCEEEccCCcCccc-cchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCC
Q 012103 262 ANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGE-VPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSEN 340 (471)
Q Consensus 262 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n 340 (471)
..+.+................+|++|+++++.++.. +...+..+++|++|+++++.+++..+..+..+++|++|+++++
T Consensus 26 ~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c 105 (284)
T d2astb2 26 IAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 105 (284)
T ss_dssp SEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred eEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccc
Confidence 345555444433333344557899999999998754 4456788999999999999998888888899999999999996
Q ss_pred -ccccc-CchhhcCCCCCceeeccCC-ccccc-cchhh-hcCCCCcEEEccCCc--Cccc-ccccccCCCCCCEeecccC
Q 012103 341 -LLTGP-IPPDMCKRGTMRDLLMLQN-KFTGE-IPATY-ANCLTLQRFRVSNNS--LKGT-VPAGIWGLPEVNIIDIALN 412 (471)
Q Consensus 341 -~l~~~-~p~~~~~~~~L~~L~l~~n-~~~~~-~~~~~-~~~~~L~~L~L~~n~--~~~~-~~~~~~~~~~L~~L~ls~n 412 (471)
.++.. +......+++|++|+++++ .++.. +...+ ..++.|+.|+++++. +++. +......+++|+.|++++|
T Consensus 106 ~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~ 185 (284)
T d2astb2 106 SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS 185 (284)
T ss_dssp BSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC
T ss_pred ccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccc
Confidence 45532 2233456899999999986 44432 22223 345799999999763 4432 3344567899999999986
Q ss_pred -ccccccchhhhccCCCCeeeCCCC-cCcccchhhhhcCCCCCEEeccCC
Q 012103 413 -QIEGPITKDIENAKALNLLFAEYN-RLSGELPEEISKATSLVVIKLNNN 460 (471)
Q Consensus 413 -~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~p~~l~~l~~L~~L~l~~n 460 (471)
.+++..+..+..+++|+.|++++| .+++.....+.++++|+.|+++++
T Consensus 186 ~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 186 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp TTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred cCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 578778888999999999999995 788777788999999999999988
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.63 E-value=5.9e-16 Score=145.38 Aligned_cols=244 Identities=19% Similarity=0.195 Sum_probs=130.2
Q ss_pred CccccCCCCCcEEEcccCcCCCcC----CccccCCCCCCeEeecccccccc---CCccccCCCCCCEEeCCCCcCccccc
Q 012103 204 PVEIGNLTELINLELSDNNISGEI----PSEIGNLVKLWRLELYNNQLSGK---LPVGLRNLTNLANFDASTNFLEGDLS 276 (471)
Q Consensus 204 ~~~l~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~l~~L~~L~l~~n~~~~~~~ 276 (471)
...+.....++.|++++|.+.... ...+...+.|+.++++++..... .+..+. ....
T Consensus 24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~----------------~l~~ 87 (344)
T d2ca6a1 24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR----------------LLLQ 87 (344)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH----------------HHHH
T ss_pred HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHH----------------HHHH
Confidence 344555666677777766654321 22233445666666655433211 000000 0001
Q ss_pred cCCCCCCCCEEEccCCcCccc----cchhccCCCCCCEEEcccCcCcccCc-------------hhhcCCCCCCEEeccC
Q 012103 277 EVRFLTNLVTLQLFKNQFSGE----VPAELGKFKKLVNLSLYTNKLTGALP-------------QELGSWAEFDFIDVSE 339 (471)
Q Consensus 277 ~~~~~~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~L~~n~l~~~~~-------------~~~~~~~~L~~L~L~~ 339 (471)
.+..+++|++|++++|.+... +...+...++|++|++++|.+..... ......+.|+.+++++
T Consensus 88 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~ 167 (344)
T d2ca6a1 88 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 167 (344)
T ss_dssp HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred HHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccc
Confidence 233344555555555554432 22233344555666665555432100 0112345667777777
Q ss_pred Cccccc----CchhhcCCCCCceeeccCCccccc-----cchhhhcCCCCcEEEccCCcCccc----ccccccCCCCCCE
Q 012103 340 NLLTGP----IPPDMCKRGTMRDLLMLQNKFTGE-----IPATYANCLTLQRFRVSNNSLKGT----VPAGIWGLPEVNI 406 (471)
Q Consensus 340 n~l~~~----~p~~~~~~~~L~~L~l~~n~~~~~-----~~~~~~~~~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~ 406 (471)
|.++.. +...+..++.++.|++++|.+... +...+..+++|+.|++++|.++.. +...+..+++|++
T Consensus 168 n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~ 247 (344)
T d2ca6a1 168 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247 (344)
T ss_dssp SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred ccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchh
Confidence 665422 222344566777777777766532 233455677777777777777532 3445667777788
Q ss_pred eecccCccccccchh----hhc--cCCCCeeeCCCCcCccc----chhhhh-cCCCCCEEeccCCcCc
Q 012103 407 IDIALNQIEGPITKD----IEN--AKALNLLFAEYNRLSGE----LPEEIS-KATSLVVIKLNNNQLT 463 (471)
Q Consensus 407 L~ls~n~~~~~~~~~----~~~--l~~L~~L~l~~n~l~~~----~p~~l~-~l~~L~~L~l~~n~~s 463 (471)
|++++|.+++..... +.. .+.|+.|++++|+|+.. +...+. ++++|+.|++++|+|.
T Consensus 248 L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred hhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence 888888776543322 222 35677888888877643 333342 4677888888888876
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.56 E-value=2e-15 Score=141.77 Aligned_cols=251 Identities=16% Similarity=0.124 Sum_probs=131.8
Q ss_pred CCCccccCCCCCCEEEcccccCccc----CCccccCCCCCcEEEcccCcCCCc---C-------CccccCCCCCCeEeec
Q 012103 178 PFPDQVVKLNKLNWLYLTNCSIDGQ----IPVEIGNLTELINLELSDNNISGE---I-------PSEIGNLVKLWRLELY 243 (471)
Q Consensus 178 ~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~---~-------p~~~~~l~~L~~L~l~ 243 (471)
.+...+.....+++|++++|.+... +...+...++|+.++++++..... . ...+..+++|++|+++
T Consensus 22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~ 101 (344)
T d2ca6a1 22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 101 (344)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence 3456677789999999999988642 334566788999999998765421 1 1223345667777777
Q ss_pred ccccccc----CCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcC
Q 012103 244 NNQLSGK----LPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKL 318 (471)
Q Consensus 244 ~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l 318 (471)
+|.+... +...+...++|++|++++|.+..... .+.. .+. ...........+.|+.+++++|.+
T Consensus 102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~--~l~---------~~~~~~~~~~~~~L~~l~l~~n~i 170 (344)
T d2ca6a1 102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQ---------ELAVNKKAKNAPPLRSIICGRNRL 170 (344)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--HHH---------HHHHHHHHHTCCCCCEEECCSSCC
T ss_pred ccccccccccchhhhhcccccchheecccccccccccccccc--ccc---------ccccccccccCcccceeecccccc
Confidence 7766533 22233455666666666665432100 0000 000 000000012234455555555544
Q ss_pred ccc----CchhhcCCCCCCEEeccCCccccc-----CchhhcCCCCCceeeccCCccccc----cchhhhcCCCCcEEEc
Q 012103 319 TGA----LPQELGSWAEFDFIDVSENLLTGP-----IPPDMCKRGTMRDLLMLQNKFTGE----IPATYANCLTLQRFRV 385 (471)
Q Consensus 319 ~~~----~~~~~~~~~~L~~L~L~~n~l~~~-----~p~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L 385 (471)
... +...+...+.|+.|++++|.++.. +...+..+++|+.|++++|.++.. +...+..+++|++|++
T Consensus 171 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~L 250 (344)
T d2ca6a1 171 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 250 (344)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred cccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhh
Confidence 321 122233444555555555554321 122344455666666666655432 2334556666666666
Q ss_pred cCCcCccc----cccccc--CCCCCCEeecccCcccccc----chhhh-ccCCCCeeeCCCCcCc
Q 012103 386 SNNSLKGT----VPAGIW--GLPEVNIIDIALNQIEGPI----TKDIE-NAKALNLLFAEYNRLS 439 (471)
Q Consensus 386 ~~n~~~~~----~~~~~~--~~~~L~~L~ls~n~~~~~~----~~~~~-~l~~L~~L~l~~n~l~ 439 (471)
++|.+++. +...+. ..+.|+.|++++|+++... ...+. +++.|+.|++++|++.
T Consensus 251 s~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 251 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred hcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence 66666533 112222 2345777777777766432 23332 4567777777777775
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.6e-14 Score=119.14 Aligned_cols=112 Identities=14% Similarity=0.100 Sum_probs=69.5
Q ss_pred ccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCc
Q 012103 86 ICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLV 165 (471)
Q Consensus 86 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 165 (471)
+.+...++.|++++|+++. ++..+..+++|++|++++|.++.. +.+..+++|++|++++|.++...+ ..+..+++|+
T Consensus 14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l-~~~~~l~~L~~L~ls~N~i~~l~~-~~~~~l~~L~ 90 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGE-GLDQALPDLT 90 (162)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECS-CHHHHCTTCC
T ss_pred ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc-CCcccCcchhhhhcccccccCCCc-cccccccccc
Confidence 5566677777777777764 344556677777777777777643 456667777777777777766544 4455666677
Q ss_pred EEEccCCCCCCCCCCccccCCCCCCEEEcccccCc
Q 012103 166 SLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSID 200 (471)
Q Consensus 166 ~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 200 (471)
+|++++|++........+..+++|+++++++|.++
T Consensus 91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~ 125 (162)
T d1a9na_ 91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 125 (162)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred cceeccccccccccccccccccccchhhcCCCccc
Confidence 77777666632221134455555555555555554
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2.6e-14 Score=117.89 Aligned_cols=107 Identities=19% Similarity=0.178 Sum_probs=47.7
Q ss_pred CCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEE
Q 012103 304 KFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRF 383 (471)
Q Consensus 304 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 383 (471)
+..++++|+|++|+++ .++.....+++|+.|++++|.++ .++ .+..+++|+.|++++|+++...+..+..+++|+.|
T Consensus 16 n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L 92 (162)
T d1a9na_ 16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 92 (162)
T ss_dssp CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccc
Confidence 3445555555555554 23333344455555555555554 222 23444445555555554443333333444444444
Q ss_pred EccCCcCccccc--ccccCCCCCCEeecccCcc
Q 012103 384 RVSNNSLKGTVP--AGIWGLPEVNIIDIALNQI 414 (471)
Q Consensus 384 ~L~~n~~~~~~~--~~~~~~~~L~~L~ls~n~~ 414 (471)
++++|++.. ++ ..+..+++|++|++++|++
T Consensus 93 ~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i 124 (162)
T d1a9na_ 93 ILTNNSLVE-LGDLDPLASLKSLTYLCILRNPV 124 (162)
T ss_dssp ECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGG
T ss_pred eeccccccc-cccccccccccccchhhcCCCcc
Confidence 444444441 11 1233344444444444444
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.51 E-value=9.4e-14 Score=108.90 Aligned_cols=101 Identities=20% Similarity=0.285 Sum_probs=44.5
Q ss_pred EEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCc
Q 012103 334 FIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQ 413 (471)
Q Consensus 334 ~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~ 413 (471)
.|++++|+++ .++ .+..+++|++|++++|.++ .+|..+..+++|+.|++++|.++ .+| .+..+++|+.|++++|+
T Consensus 2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~ 76 (124)
T d1dcea3 2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNR 76 (124)
T ss_dssp EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSC
T ss_pred EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCc
Confidence 3444444443 222 2334444444444444444 23334444444444444444444 222 24444455555555555
Q ss_pred ccccc-chhhhccCCCCeeeCCCCcCc
Q 012103 414 IEGPI-TKDIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 414 ~~~~~-~~~~~~l~~L~~L~l~~n~l~ 439 (471)
+.+.. ...+..+++|+.|++++|+++
T Consensus 77 i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 77 LQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 44321 133444555555555555543
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.48 E-value=1.1e-13 Score=108.46 Aligned_cols=87 Identities=22% Similarity=0.279 Sum_probs=32.9
Q ss_pred ccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCC
Q 012103 110 LNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKL 189 (471)
Q Consensus 110 ~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L 189 (471)
+.++++|++|++++|.+++.++.+..+++|+.|++++|.+++. ..+..+++|++|++++|++........+..+++|
T Consensus 16 l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l---~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L 92 (124)
T d1dcea3 16 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV---DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 92 (124)
T ss_dssp GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC---GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred cccCCCCCEEECCCCccCcchhhhhhhhccccccccccccccc---CccccccccCeEECCCCccCCCCCchhhcCCCCC
Confidence 3344444444444444433222333333333333333333322 1233444444444444444222212233334444
Q ss_pred CEEEcccccC
Q 012103 190 NWLYLTNCSI 199 (471)
Q Consensus 190 ~~L~l~~n~l 199 (471)
+++++++|.+
T Consensus 93 ~~L~l~~N~i 102 (124)
T d1dcea3 93 VLLNLQGNSL 102 (124)
T ss_dssp CEEECTTSGG
T ss_pred CEEECCCCcC
Confidence 4444444433
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.37 E-value=2.2e-14 Score=122.67 Aligned_cols=128 Identities=19% Similarity=0.216 Sum_probs=62.3
Q ss_pred hhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCC
Q 012103 324 QELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPE 403 (471)
Q Consensus 324 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~ 403 (471)
..+..+++|++|++++|.++ .++ .+..+++|+.|++++|.++ .++.....+++|+.|++++|+++. ++ .+..+++
T Consensus 42 ~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~-~~~~l~~ 116 (198)
T d1m9la_ 42 ATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HH-HHHHHHH
T ss_pred hHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-cc-ccccccc
Confidence 34444445555555555544 332 2444455555555555544 233333333455555555555552 22 2444555
Q ss_pred CCEeecccCccccccc-hhhhccCCCCeeeCCCCcCcccchh----------hhhcCCCCCEEe
Q 012103 404 VNIIDIALNQIEGPIT-KDIENAKALNLLFAEYNRLSGELPE----------EISKATSLVVIK 456 (471)
Q Consensus 404 L~~L~ls~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~----------~l~~l~~L~~L~ 456 (471)
|+.|++++|+++.... ..+..+++|+.|++++|++....+. .+..+++|+.||
T Consensus 117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred ccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence 5555555555553211 3445555566666666555432221 145667777765
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.31 E-value=7.3e-14 Score=119.37 Aligned_cols=131 Identities=18% Similarity=0.227 Sum_probs=97.2
Q ss_pred ccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhc
Q 012103 297 EVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYAN 376 (471)
Q Consensus 297 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 376 (471)
.++..+..+++|++|++++|.++ .++ .+..+++|+.|++++|.++ .+|.....+++|+.|++++|+++. + ..+..
T Consensus 39 ~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~ 113 (198)
T d1m9la_ 39 KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEK 113 (198)
T ss_dssp CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHH
T ss_pred hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-ccccc
Confidence 44566777888888888888887 344 4777888888888888886 566555555678888888888874 3 34777
Q ss_pred CCCCcEEEccCCcCccccc-ccccCCCCCCEeecccCccccccch----------hhhccCCCCeee
Q 012103 377 CLTLQRFRVSNNSLKGTVP-AGIWGLPEVNIIDIALNQIEGPITK----------DIENAKALNLLF 432 (471)
Q Consensus 377 ~~~L~~L~L~~n~~~~~~~-~~~~~~~~L~~L~ls~n~~~~~~~~----------~~~~l~~L~~L~ 432 (471)
+++|+.|++++|++++... ..+..+++|+.|++++|++....+. .+..+++|+.||
T Consensus 114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred cccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence 8888999999888873321 4578888899999999887654332 256788898876
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=5.6e-12 Score=102.94 Aligned_cols=109 Identities=11% Similarity=0.085 Sum_probs=81.5
Q ss_pred CCCCCEEeccCCcccccCchhhcCCCCCceeeccCC-ccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEe
Q 012103 329 WAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQN-KFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNII 407 (471)
Q Consensus 329 ~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L 407 (471)
+...+.++.+++.++ .+|..+...+++++|++++| .++...+..|.++++|+.|++++|+++...+..|..+++|++|
T Consensus 7 c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L 85 (156)
T d2ifga3 7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (156)
T ss_dssp CSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred cCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence 334566888887776 66777777888888888766 4776566678888888888888888886667778888888888
Q ss_pred ecccCccccccchhhhccCCCCeeeCCCCcCc
Q 012103 408 DIALNQIEGPITKDIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 408 ~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 439 (471)
+|++|+++...+..+. ...|+.|++++|.+.
T Consensus 86 ~Ls~N~l~~l~~~~~~-~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 86 NLSFNALESLSWKTVQ-GLSLQELVLSGNPLH 116 (156)
T ss_dssp ECCSSCCSCCCSTTTC-SCCCCEEECCSSCCC
T ss_pred eccCCCCcccChhhhc-cccccccccCCCccc
Confidence 8888888854444444 346888888888774
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=6e-11 Score=96.66 Aligned_cols=106 Identities=13% Similarity=0.102 Sum_probs=70.6
Q ss_pred CCEEEcccCcCcccCchhhcCCCCCCEEeccCCc-ccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEcc
Q 012103 308 LVNLSLYTNKLTGALPQELGSWAEFDFIDVSENL-LTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVS 386 (471)
Q Consensus 308 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 386 (471)
.+.++.+++.+. ..|..+..+++|++|++++|+ ++..-+.++..+++|+.|++++|+++...+..|..+++|++|+|+
T Consensus 10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls 88 (156)
T d2ifga3 10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (156)
T ss_dssp SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence 345566665555 345556666677777776553 553334456667777777777777776667777778888888888
Q ss_pred CCcCcccccccccCCCCCCEeecccCccc
Q 012103 387 NNSLKGTVPAGIWGLPEVNIIDIALNQIE 415 (471)
Q Consensus 387 ~n~~~~~~~~~~~~~~~L~~L~ls~n~~~ 415 (471)
+|+++ .+|........|+.|+|++|++.
T Consensus 89 ~N~l~-~l~~~~~~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 89 FNALE-SLSWKTVQGLSLQELVLSGNPLH 116 (156)
T ss_dssp SSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred CCCCc-ccChhhhccccccccccCCCccc
Confidence 88887 55544444456888888888775
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=6.4e-09 Score=84.94 Aligned_cols=93 Identities=18% Similarity=0.223 Sum_probs=63.6
Q ss_pred ccchhhhcCCCCcEEEccCCcCccc--ccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccch---
Q 012103 369 EIPATYANCLTLQRFRVSNNSLKGT--VPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELP--- 443 (471)
Q Consensus 369 ~~~~~~~~~~~L~~L~L~~n~~~~~--~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p--- 443 (471)
.++..+..++.|++|++++|+++.. ++..+..+++|+.|++++|.++...+-.......|+.+++++|.+.....
T Consensus 56 ~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~ 135 (162)
T d1koha1 56 TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQS 135 (162)
T ss_dssp HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHH
T ss_pred hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccch
Confidence 3444556678888888888888743 23446677888888888888886544344455678888888888875443
Q ss_pred ----hhhhcCCCCCEEeccCCcCc
Q 012103 444 ----EEISKATSLVVIKLNNNQLT 463 (471)
Q Consensus 444 ----~~l~~l~~L~~L~l~~n~~s 463 (471)
..+..+|+|+.|| |.++.
T Consensus 136 ~y~~~i~~~~P~L~~LD--g~~v~ 157 (162)
T d1koha1 136 TYISAIRERFPKLLRLD--GHELP 157 (162)
T ss_dssp HHHHHHHTTSTTCCEET--TEECC
T ss_pred hHHHHHHHHCCCCCEEC--cCCCc
Confidence 2255678898876 55543
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=4.5e-08 Score=79.76 Aligned_cols=108 Identities=15% Similarity=0.092 Sum_probs=72.5
Q ss_pred CCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccc--cchhhhccCCCCeee
Q 012103 355 TMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGP--ITKDIENAKALNLLF 432 (471)
Q Consensus 355 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~--~~~~~~~l~~L~~L~ 432 (471)
..+.|++++.... ..+..+..+..++...+... .++.....++.|++|++++|+++.. ++..+..+++|+.|+
T Consensus 23 ~~~~Ldls~l~~~----~~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~ 97 (162)
T d1koha1 23 SQQALDLKGLRSD----PDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN 97 (162)
T ss_dssp SSCCBCCCCCSSC----TTTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCC
T ss_pred hhCeeecccCCCC----chhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccc
Confidence 3455565554422 12333333444444444333 4454556789999999999999874 345678899999999
Q ss_pred CCCCcCcccchhhhhcCCCCCEEeccCCcCcccCC
Q 012103 433 AEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIP 467 (471)
Q Consensus 433 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip 467 (471)
+++|+|+..-+-.......|+.+++++|++++...
T Consensus 98 Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~ 132 (162)
T d1koha1 98 LSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR 132 (162)
T ss_dssp CTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred cccCccccchhhhhhhccccceeecCCCCcCcCcc
Confidence 99999995433344455679999999999986543
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.10 E-value=2.6e-06 Score=69.27 Aligned_cols=109 Identities=7% Similarity=0.089 Sum_probs=56.9
Q ss_pred CCCCCCEEeccCC-ccccc----CchhhcCCCCCceeeccCCccccc----cchhhhcCCCCcEEEccCCcCccc----c
Q 012103 328 SWAEFDFIDVSEN-LLTGP----IPPDMCKRGTMRDLLMLQNKFTGE----IPATYANCLTLQRFRVSNNSLKGT----V 394 (471)
Q Consensus 328 ~~~~L~~L~L~~n-~l~~~----~p~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~n~~~~~----~ 394 (471)
+.+.|++|+|+++ .++.. +-..+...+.|+.|++++|.+... +...+...+.|++|++++|.+++. +
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l 92 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 92 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence 4466777777763 34321 223445556677777777666532 222344456666666666666532 2
Q ss_pred cccccCCCCCCEeecccCccccc-------cchhhhccCCCCeeeCCCC
Q 012103 395 PAGIWGLPEVNIIDIALNQIEGP-------ITKDIENAKALNLLFAEYN 436 (471)
Q Consensus 395 ~~~~~~~~~L~~L~ls~n~~~~~-------~~~~~~~l~~L~~L~l~~n 436 (471)
...+...++|++|++++|.+... +...+...++|+.|+++.+
T Consensus 93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence 23445555666666665543321 2233334455555555444
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.99 E-value=6.7e-06 Score=66.80 Aligned_cols=64 Identities=11% Similarity=0.109 Sum_probs=28.9
Q ss_pred hcCCCCCCEEeccCCcccc----cCchhhcCCCCCceeeccCCccccc----cchhhhcCCCCcEEEccCCc
Q 012103 326 LGSWAEFDFIDVSENLLTG----PIPPDMCKRGTMRDLLMLQNKFTGE----IPATYANCLTLQRFRVSNNS 389 (471)
Q Consensus 326 ~~~~~~L~~L~L~~n~l~~----~~p~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~n~ 389 (471)
+...+.|++|++++|.++. .+...+...+.|+.|++++|.++.. +...+...++|++|++++|+
T Consensus 40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~ 111 (167)
T d1pgva_ 40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR 111 (167)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence 3344455555555555432 1112233344555555555555432 12233444555555555544
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.74 E-value=1.4e-05 Score=64.87 Aligned_cols=65 Identities=8% Similarity=0.151 Sum_probs=30.6
Q ss_pred cCCCCCCEEeccC-Cccccc----CchhhcCCCCCceeeccCCcccccc----chhhhcCCCCcEEEccCCcCc
Q 012103 327 GSWAEFDFIDVSE-NLLTGP----IPPDMCKRGTMRDLLMLQNKFTGEI----PATYANCLTLQRFRVSNNSLK 391 (471)
Q Consensus 327 ~~~~~L~~L~L~~-n~l~~~----~p~~~~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~L~~n~~~ 391 (471)
.+.+.|++|++++ +.++.. +-..+...+.|++|++++|.++... ...+...++++.+++++|.+.
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~ 87 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 87 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence 3445666666665 234321 1223334555556666655554321 122333455555555555544
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.47 E-value=7.3e-05 Score=60.34 Aligned_cols=64 Identities=11% Similarity=0.092 Sum_probs=27.4
Q ss_pred CCCCCCEEEccc-CcCccc----CchhhcCCCCCCEEeccCCccccc----CchhhcCCCCCceeeccCCccc
Q 012103 304 KFKKLVNLSLYT-NKLTGA----LPQELGSWAEFDFIDVSENLLTGP----IPPDMCKRGTMRDLLMLQNKFT 367 (471)
Q Consensus 304 ~~~~L~~L~L~~-n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~p~~~~~~~~L~~L~l~~n~~~ 367 (471)
+.++|++|++++ +.++.. +...+...+.|++|++++|.++.. +...+...+.++.+++++|.+.
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~ 87 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 87 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence 344555555554 233211 122233445555555555554321 1122233445555555555444
|