Citrus Sinensis ID: 012113

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470
MDVEEESKSSLESPLIHQRPLQDDKCIDKAGMIVELKRQMQLAGPLVLVSFLQYSFQMISVMFVGHLGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQYRMMGVHMLRAMLVLSLSSIPIAVLWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLMLTTGISTLVHVLSCWTLIFGFGFGNKGAALSNAISYWTNVIILAIYIKFSPKCEKTWTGFSKEALENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPYAARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYLIGLPCAVYLAFVFQFGAKGLWMGIICGSGLQAFVLLVITLRTNWEQEVN
ccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHEEEHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHc
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHcccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHccccHHHHHHHEEHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcc
mdveeesksslesplihqrplqddkcidkAGMIVELKRQMQLAGPLVLVSFLQYSFQMISVMFVGHLGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQYRMMGVHMLRAMLVLSLSSIPIAVLWACTGKIfttlhqdpeisfhagiyarwlipsilpygllqcQHRFLQTQNNILPLMLTTGISTLVHVLSCWTLIfgfgfgnkgAALSNAISYWTNVIILAIYIKfspkcektwTGFSKEALENLRSFLGLGIPSALMVCLEFSSYEFLVLMsgllpnpkletSVMSISLNTISVVfripfgfgsaVSTRVsnelgagkpyAARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVlalsnfmdgIQGVLSGVARGCGWQKLGAYVNLGAYYLIGLPCAVYLAFVFQFGAKGLWMGIICGSGLQAFVLLVITLRTNWEQEVN
mdveeesksslesplihqrplqddkcIDKAGMIVELKRQMQLAGPLVLVSFLQYSFQMISVMFVGHLGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQYRMMGVHMLRAMLVLSLSSIPIAVLWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLMLTTGISTLVHVLSCWTLIFGFGFGNKGAALSNAISYWTNVIILAIYIKFSPKCEKTWTGFSKEALENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPYAARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYLIGLPCAVYLAFVFQFGAKGLWMGIICGSGLQAFVLLVITLRtnweqevn
MDVeeesksslesPLIHQRPLQDDKCIDKAGMIVELKRQMQLAGPLVLVSFLQYSFQMISVMFVGHLGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQYRMMGVHMLRAMLVLSLSSIPIAVLWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLMLTTGISTLVHVLSCWTLIFGFGFGNKGAALSNAISYWTNVIILAIYIKFSPKCEKTWTGFSKEALENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPYAARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYLIGLPCAVYLAFVFQFGAKGLWMGIICGSGLQAFVLLVITLRTNWEQEVN
************************KCIDKAGMIVELKRQMQLAGPLVLVSFLQYSFQMISVMFVGHLGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQYRMMGVHMLRAMLVLSLSSIPIAVLWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLMLTTGISTLVHVLSCWTLIFGFGFGNKGAALSNAISYWTNVIILAIYIKFSPKCEKTWTGFSKEALENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPYAARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYLIGLPCAVYLAFVFQFGAKGLWMGIICGSGLQAFVLLVITLRTNW*****
*****************************AGMIVELKRQMQLAGPLVLVSFLQYSFQMISVMFVGHLGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQYRMMGVHMLRAMLVLSLSSIPIAVLWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLMLTTGISTLVHVLSCWTLIFGFGFGNKGAALSNAISYWTNVIILAIYIKFSPKCEKTWTGFSKEALENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPYAARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYLIGLPCAVYLAFVFQFGAKGLWMGIICGSGLQAFVLLVITLRTNWEQEV*
***************IHQRPLQDDKCIDKAGMIVELKRQMQLAGPLVLVSFLQYSFQMISVMFVGHLGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQYRMMGVHMLRAMLVLSLSSIPIAVLWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLMLTTGISTLVHVLSCWTLIFGFGFGNKGAALSNAISYWTNVIILAIYIKFSPKCEKTWTGFSKEALENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPYAARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYLIGLPCAVYLAFVFQFGAKGLWMGIICGSGLQAFVLLVITLRTNWEQEVN
************************KCIDKAGMIVELKRQMQLAGPLVLVSFLQYSFQMISVMFVGHLGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQYRMMGVHMLRAMLVLSLSSIPIAVLWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLMLTTGISTLVHVLSCWTLIFGFGFGNKGAALSNAISYWTNVIILAIYIKFSPKCEKTWTGFSKEALENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPYAARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYLIGLPCAVYLAFVFQFGAKGLWMGIICGSGLQAFVLLVITLRTNWEQ***
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
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MDVEEESKSSLESPLIHQRPLQDDKCIDKAGMIVELKRQMQLAGPLVLVSFLQYSFQMISVMFVGHLGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQYRMMGVHMLRAMLVLSLSSIPIAVLWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLMLTTGISTLVHVLSCWTLIFGFGFGNKGAALSNAISYWTNVIILAIYIKFSPKCEKTWTGFSKEALENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPYAARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYLIGLPCAVYLAFVFQFGAKGLWMGIICGSGLQAFVLLVITLRTNWEQEVN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query470 2.2.26 [Sep-21-2011]
Q9SIA5476 MATE efflux family protei no no 0.921 0.909 0.460 1e-107
Q8GXM8476 MATE efflux family protei no no 0.965 0.953 0.426 1e-105
Q9SIA4476 MATE efflux family protei no no 0.957 0.945 0.448 1e-105
Q8RWF5483 MATE efflux family protei no no 0.957 0.931 0.441 1e-104
Q9SIA1477 MATE efflux family protei no no 0.957 0.943 0.443 1e-104
Q9SIA3476 MATE efflux family protei no no 0.970 0.957 0.442 1e-104
Q9LUH2477 MATE efflux family protei no no 0.963 0.949 0.394 3e-93
Q9LUH3469 MATE efflux family protei no no 0.936 0.938 0.405 2e-90
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.923 0.856 0.410 1e-82
Q8K0H1567 Multidrug and toxin extru yes no 0.938 0.777 0.331 3e-64
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function desciption
 Score =  388 bits (997), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/441 (46%), Positives = 281/441 (63%), Gaps = 8/441 (1%)

Query: 32  MIVELKRQMQLAGPLVLVSFLQYSFQMISVMFVGHLGDLSLSSASMATSFAGVTGFSYML 91
           + VELKR  +LA P+  V+  QY   +ISVM  GH G+L LS  ++A SF  VTGFS M 
Sbjct: 24  LTVELKRVSRLAAPMATVTIAQYLLPVISVMVAGHNGELQLSGVALANSFTNVTGFSIMC 83

Query: 92  GMGSAVETFCGQAFGAKQYRMMGVHMLRAMLVLSLSSIPI----AVLWACTGKIFTTLHQ 147
           G+  A+ET CGQA+GAKQY  +G +   A+     S+IPI    ++LW    KI  +L Q
Sbjct: 84  GLVGALETLCGQAYGAKQYEKIGTYAYSAIA----SNIPICFLISILWLYIEKILISLGQ 139

Query: 148 DPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLMLTTGISTLVHVLSCWTLI 207
           DPEIS  AG YA WLIP++    ++    RFL TQ  ++PL+ T   + L HVL CWTL+
Sbjct: 140 DPEISRIAGSYAFWLIPALFGQAIVIPLSRFLLTQGLVIPLLFTAVTTLLFHVLVCWTLV 199

Query: 208 FGFGFGNKGAALSNAISYWTNVIILAIYIKFSPKCEKTWTGFSKEALENLRSFLGLGIPS 267
           F FG G  G A++ ++S+W   +IL+ Y++FS  CEKT    S++ + +++ F   GIPS
Sbjct: 200 FLFGLGCNGPAMATSVSFWFYAVILSCYVRFSSSCEKTRGFVSRDFVSSIKQFFQYGIPS 259

Query: 268 ALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNEL 327
           A M+CLE+  +E L+L SGLLPNPKLETSV+SI L   ++ + I  G  +AVSTRVSN L
Sbjct: 260 AAMICLEWWLFEILILCSGLLPNPKLETSVLSICLTIETLHYVISAGVAAAVSTRVSNNL 319

Query: 328 GAGKPYAARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLAL 387
           GAG P  AR++V   + L + E    S +    R I GY +SN  EV+ Y+A + P+L L
Sbjct: 320 GAGNPQVARVSVLAGLCLWIVESAFFSILLFTCRNIIGYAFSNSKEVLDYVADLTPLLCL 379

Query: 388 SNFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYLIGLPCAVYLAFVFQFGAKGLWMGIIC 447
           S  +DG   VL+GVARG GWQ +GA+ N  +YYL+G P  +YLAF  +   KGLW G++ 
Sbjct: 380 SFILDGFTAVLNGVARGSGWQHIGAWNNTVSYYLVGAPVGIYLAFSRELNGKGLWCGVVV 439

Query: 448 GSGLQAFVLLVITLRTNWEQE 468
           GS +QA +L ++T   NW+++
Sbjct: 440 GSTVQATILAIVTASINWKEQ 460
Efflux carrier for plant-derived alkaloids, antibiotics, heavy metal and other toxic compounds. Involved in cadmium detoxification. Requires probably a proton-motive force for the efflux.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function description
>sp|Q8K0H1|S47A1_MOUSE Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query470
255540517503 TRANSPARENT TESTA 12 protein, putative [ 1.0 0.934 0.708 0.0
225456896493 PREDICTED: MATE efflux family protein 7 0.985 0.939 0.708 0.0
297733704448 unnamed protein product [Vitis vinifera] 0.917 0.962 0.737 0.0
255540515471 TRANSPARENT TESTA 12 protein, putative [ 0.936 0.934 0.707 0.0
359491480491 PREDICTED: MATE efflux family protein DT 0.995 0.953 0.615 1e-168
359491207543 PREDICTED: LOW QUALITY PROTEIN: MATE eff 0.985 0.852 0.632 1e-167
297734273 1072 unnamed protein product [Vitis vinifera] 0.995 0.436 0.615 1e-167
225456065493 PREDICTED: MATE efflux family protein 6 0.985 0.939 0.600 1e-166
297734274563 unnamed protein product [Vitis vinifera] 0.985 0.822 0.600 1e-165
356527876498 PREDICTED: MATE efflux family protein DT 0.997 0.941 0.587 1e-164
>gi|255540517|ref|XP_002511323.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223550438|gb|EEF51925.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/477 (70%), Positives = 394/477 (82%), Gaps = 7/477 (1%)

Query: 1   MDVEEESKSSLESPLI--HQRPLQDD-----KCIDKAGMIVELKRQMQLAGPLVLVSFLQ 53
           M+ ++ S S ++SPLI  H+  ++ D     KC  +A  I ELKRQM LAGPL+ VSF Q
Sbjct: 1   MNDQDISSSLMQSPLIATHENIVEYDANQGRKCYLEAETITELKRQMSLAGPLIAVSFFQ 60

Query: 54  YSFQMISVMFVGHLGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQYRMM 113
           YS QMISVMFVGHLG+LSL+SASMATSFAGVTGFS++ GMGSA+ETF GQA+GA+QY M+
Sbjct: 61  YSLQMISVMFVGHLGELSLASASMATSFAGVTGFSFLQGMGSALETFSGQAYGARQYHML 120

Query: 114 GVHMLRAMLVLSLSSIPIAVLWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQ 173
           GVH  RAMLVL+L SIPI+  W  +G IF    QDPEIS  A IYA WLIPSILPYGLLQ
Sbjct: 121 GVHTQRAMLVLALMSIPISFFWLYSGHIFLIFGQDPEISMLAEIYALWLIPSILPYGLLQ 180

Query: 174 CQHRFLQTQNNILPLMLTTGISTLVHVLSCWTLIFGFGFGNKGAALSNAISYWTNVIILA 233
           CQ RFLQ QN +LPL++  GI++L+H+  CWTLI   GFGNKGAALS AISYW NV ILA
Sbjct: 181 CQVRFLQAQNIVLPLLIGAGITSLMHIPVCWTLILKLGFGNKGAALSIAISYWINVFILA 240

Query: 234 IYIKFSPKCEKTWTGFSKEALENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGLLPNPKL 293
           IYIK SP CEKTWTGFSKE  ENL  F+ LGIPSALM+C+EF SYE LVL+SGLLPNPKL
Sbjct: 241 IYIKLSPTCEKTWTGFSKEGKENLLDFVKLGIPSALMICVEFWSYESLVLISGLLPNPKL 300

Query: 294 ETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPYAARLAVQIVIILALTEGVLL 353
           ETS+MSISLNT S+VFRIP G GSA+STRVSNELGAGKP +ARLAVQIVI LA+ E VLL
Sbjct: 301 ETSMMSISLNTSSLVFRIPVGLGSAISTRVSNELGAGKPQSARLAVQIVICLAVIESVLL 360

Query: 354 SSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAY 413
           S IAVA R IWGY+Y+N++E++RY+ASIMP+LA+SNFMDGIQGVLSG+ARGCGWQ +GAY
Sbjct: 361 SLIAVAVRDIWGYLYTNELEIVRYLASIMPILAISNFMDGIQGVLSGIARGCGWQDIGAY 420

Query: 414 VNLGAYYLIGLPCAVYLAFVFQFGAKGLWMGIICGSGLQAFVLLVITLRTNWEQEVN 470
           VNLGAYYL+G+PCA+ L F+FQFG KGLWMGII GS LQA +LLVIT+RTNWE++  
Sbjct: 421 VNLGAYYLVGIPCALILTFIFQFGGKGLWMGIISGSSLQALLLLVITMRTNWERQAK 477

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225456896|ref|XP_002277527.1| PREDICTED: MATE efflux family protein 7 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297733704|emb|CBI14951.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255540515|ref|XP_002511322.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223550437|gb|EEF51924.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359491480|ref|XP_002280388.2| PREDICTED: MATE efflux family protein DTX1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359491207|ref|XP_003634241.1| PREDICTED: LOW QUALITY PROTEIN: MATE efflux family protein 7-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734273|emb|CBI15520.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225456065|ref|XP_002280423.1| PREDICTED: MATE efflux family protein 6 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734274|emb|CBI15521.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356527876|ref|XP_003532532.1| PREDICTED: MATE efflux family protein DTX1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query470
TAIR|locus:2156737486 AT5G52450 "AT5G52450" [Arabido 0.938 0.907 0.566 4.3e-141
TAIR|locus:2027834476 AT1G73700 "AT1G73700" [Arabido 0.923 0.911 0.536 1e-130
TAIR|locus:2040839480 AT2G34360 "AT2G34360" [Arabido 0.938 0.918 0.529 1.1e-128
TAIR|locus:2026311485 AT1G71140 "AT1G71140" [Arabido 0.936 0.907 0.468 1.8e-110
TAIR|locus:2037858481 AT1G15170 "AT1G15170" [Arabido 0.929 0.908 0.446 4.6e-105
TAIR|locus:2037723487 AT1G15150 "AT1G15150" [Arabido 0.923 0.891 0.447 2e-104
TAIR|locus:2050180476 AT2G04050 "AT2G04050" [Arabido 0.944 0.932 0.454 2.9e-103
TAIR|locus:2050190476 DTX1 "AT2G04040" [Arabidopsis 0.919 0.907 0.463 1.3e-102
TAIR|locus:2033334482 AT1G66760 "AT1G66760" [Arabido 0.959 0.935 0.430 4.2e-102
TAIR|locus:2050185476 AT2G04080 "AT2G04080" [Arabido 0.925 0.913 0.439 1.4e-101
TAIR|locus:2156737 AT5G52450 "AT5G52450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1380 (490.8 bits), Expect = 4.3e-141, P = 4.3e-141
 Identities = 250/441 (56%), Positives = 340/441 (77%)

Query:    28 DKAGMIVELKRQMQLAGPLVLVSFLQYSFQMISVMFVGHLGDLSLSSASMATSFAGVTGF 87
             +K+ +  E+K+Q+ L+GPL+ VS LQ+  Q+ISVMFVGHLG L LS+AS+ATSFA VTGF
Sbjct:    19 EKSSVKEEVKKQLWLSGPLIAVSLLQFCLQVISVMFVGHLGSLPLSAASIATSFASVTGF 78

Query:    88 SYMLGMGSAVETFCGQAFGAKQYRMMGVHMLRAMLVLSLSSIPIAVLWACTGKIFTTLHQ 147
             S+++G  SA++T CGQA+GAK+Y M+G+ M RAM VL+L+SIP++++WA T  +     Q
Sbjct:    79 SFLMGTASALDTLCGQAYGAKKYGMLGIQMQRAMFVLTLASIPLSIIWANTEHLLVFFGQ 138

Query:   148 DPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLMLTTGISTLVHVLSCWTLI 207
             +  I+  AG YA+++IPSI  YGLLQC +RFLQ QNN+ P++  +G++T +HVL CW L+
Sbjct:   139 NKSIATLAGSYAKFMIPSIFAYGLLQCFNRFLQAQNNVFPVVFCSGVTTSLHVLLCWVLV 198

Query:   208 FGFGFGNKGAALSNAISYWTNVIILAIYIKFSPKCEKTWTGFSKEALENLRSFLGLGIPS 267
             F  G G +GAAL+N+ISYW NV++L  Y+KFSP C  TWTGFSKEAL ++  FL L +PS
Sbjct:   199 FKSGLGFQGAALANSISYWLNVVLLFCYVKFSPSCSLTWTGFSKEALRDILPFLRLAVPS 258

Query:   268 ALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNEL 327
             ALMVCLE  S+E LVL+SGLLPNP LETSV+SI LNT   ++ IPFG   A STR+SNEL
Sbjct:   259 ALMVCLEMWSFELLVLLSGLLPNPVLETSVLSICLNTSGTMWMIPFGLSGAASTRISNEL 318

Query:   328 GAGKPYAARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLAL 387
             GAG P  A+LAV++VI +A+ E +++ S+ +  R IWG  YS+++EV+ Y+AS+MP+LAL
Sbjct:   319 GAGNPKVAKLAVRVVICIAVAESIVIGSVLILIRNIWGLAYSSELEVVSYVASMMPILAL 378

Query:   388 SNFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYLIGLPCAVYLAFVFQFGAKGLWMGIIC 447
              NF+D +Q VLSGVARGCGWQK+GA +NLG+YYL+G+P  + LAF F  G +GLW+GIIC
Sbjct:   379 GNFLDSLQCVLSGVARGCGWQKIGAIINLGSYYLVGVPSGLLLAFHFHVGGRGLWLGIIC 438

Query:   448 GSGLQAFVLLVITLRTNWEQE 468
                +Q F L ++T+ TNW++E
Sbjct:   439 ALVVQVFGLGLVTIFTNWDEE 459
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009624 "response to nematode" evidence=IEP
GO:0005774 "vacuolar membrane" evidence=IDA
TAIR|locus:2027834 AT1G73700 "AT1G73700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040839 AT2G34360 "AT2G34360" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026311 AT1G71140 "AT1G71140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037858 AT1G15170 "AT1G15170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037723 AT1G15150 "AT1G15150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050180 AT2G04050 "AT2G04050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050190 DTX1 "AT2G04040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2033334 AT1G66760 "AT1G66760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050185 AT2G04080 "AT2G04080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9USK3YJ2D_SCHPONo assigned EC number0.33970.97020.8460yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00015983001
SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (493 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query470
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 0.0
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 6e-67
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 3e-62
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 2e-61
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 2e-46
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 3e-37
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 5e-37
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 5e-34
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 1e-27
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 2e-27
pfam01554161 pfam01554, MatE, MatE 8e-27
pfam01554161 pfam01554, MatE, MatE 3e-23
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 4e-23
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 2e-22
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 1e-20
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 6e-18
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 2e-16
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 1e-15
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 8e-15
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 3e-08
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 4e-08
cd13141443 cd13141, MATE_like_13, Uncharacterized subfamily o 3e-07
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 6e-07
cd13149434 cd13149, MATE_like_2, Uncharacterized subfamily of 2e-06
cd13124434 cd13124, MATE_SpoVB_like, Stage V sporulation prot 2e-05
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 9e-05
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 4e-04
cd13134 438 cd13134, MATE_like_8, Uncharacterized subfamily of 6e-04
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 0.002
cd13123420 cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of 0.004
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  523 bits (1349), Expect = 0.0
 Identities = 221/435 (50%), Positives = 305/435 (70%), Gaps = 1/435 (0%)

Query: 35  ELKRQMQLAGPLVLVSFLQYSFQMISVMFVGHLGDLSLSSASMATSFAGVTGFSYMLGMG 94
           E K+ ++LA PLVL S LQYS  ++SV+FVGHLG L L++AS+A+SFA VTGFS +LG+ 
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 95  SAVETFCGQAFGAKQYRMMGVHMLRAMLVLSLSSIPIAVLWACTGKIFTTLHQDPEISFH 154
           SA++T CGQAFGAK Y+++GV++ RA+++L L  +PI++LW  T  I   L QDPEI+  
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 155 AGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLMLTTGISTLVHVLSCWTLIFGFGFGN 214
           AG Y RWLIP +  Y L +   R+LQ Q  +LPL+  + ++ L+++L  + L+F  G G 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 215 KGAALSNAISYWTNVIILAIYIKFSPKCEKTWTGFSKEALENLRSFLGLGIPSALMVCLE 274
            GAAL+ +ISYW  V++L +YI FS   + TW GFS+EA      FL L IPSALM+CLE
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 275 FSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPYA 334
           + ++E LVL++GLLP   +  +  SI L T S+++ IP G   A S RV NELGAG P  
Sbjct: 241 WWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKR 299

Query: 335 ARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGI 394
           A+LA  + +IL+L  GV+++ + +  R +W Y++++D EVI  +A ++P+LAL    DG+
Sbjct: 300 AKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGL 359

Query: 395 QGVLSGVARGCGWQKLGAYVNLGAYYLIGLPCAVYLAFVFQFGAKGLWMGIICGSGLQAF 454
           Q VLSGV RGCG QKLGAYVNL AYYLIGLP  + LAFV   G KGLW+G+I G  LQA 
Sbjct: 360 QAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIAGLILQAV 419

Query: 455 VLLVITLRTNWEQEV 469
           +LL+I LRT+W++E 
Sbjct: 420 ILLLIILRTDWDKEA 434

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240528 cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 470
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
COG0728518 MviN Uncharacterized membrane protein, putative vi 100.0
PRK10459492 colanic acid exporter; Provisional 100.0
COG2244480 RfbX Membrane protein involved in the export of O- 99.97
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.9
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.9
PRK00187 464 multidrug efflux protein NorA; Provisional 99.9
PRK10189 478 MATE family multidrug exporter; Provisional 99.89
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.89
PRK01766 456 multidrug efflux protein; Reviewed 99.89
TIGR01695502 mviN integral membrane protein MviN. This model re 99.82
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.82
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.8
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.77
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.77
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.75
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.72
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.71
PRK10459492 colanic acid exporter; Provisional 99.71
PRK15099416 O-antigen translocase; Provisional 99.69
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.67
COG2244480 RfbX Membrane protein involved in the export of O- 99.63
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.39
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 99.32
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 99.08
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.96
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.61
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.43
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.37
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.26
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.22
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 97.92
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.72
COG4267467 Predicted membrane protein [Function unknown] 97.21
COG4267 467 Predicted membrane protein [Function unknown] 88.65
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=2.8e-57  Score=440.44  Aligned_cols=434  Identities=27%  Similarity=0.401  Sum_probs=412.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 012113           32 MIVELKRQMQLAGPLVLVSFLQYSFQMISVMFVGHLGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQYR  111 (470)
Q Consensus        32 ~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~  111 (470)
                      .++..|+++++++|.+++++.+.+++.+|+.++||++++++++.+++.++..++ ..+..|++.+..+.++|++|+||++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~   90 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK   90 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence            467899999999999999999999999999999999999999999999999997 9999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChhHHHH
Q 012113          112 MMGVHMLRAMLVLSLSSIPIAV-LWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLML  190 (470)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  190 (470)
                      +.++..++++.+.++++++..+ ...+.++++.+++.++++.+.+.+|+++..++.|+..++..+.+.+|+.||+|.+++
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            9999999999999999988888 899999999999998889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhh-cC-CCcchhHHHHHHHHHHHHHHHHHHHHhCcc-cccccCCCCHHHHHHHHHHHHHHHHH
Q 012113          191 TTGISTLVHVLSCWTLIFG-FG-FGNKGAALSNAISYWTNVIILAIYIKFSPK-CEKTWTGFSKEALENLRSFLGLGIPS  267 (470)
Q Consensus       191 ~~~~~~~~~i~~~~~li~~-~~-~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~  267 (470)
                      .+++++++|+++|++++++ ++ +|+.|+++||++++.+..++.+.+++++++ ......+..+.+++..|++++.|+|.
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~  250 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI  250 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence            9999999999999999999 46 999999999999999999999999987664 22222333345689999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 012113          268 ALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPYAARLAVQIVIILAL  347 (470)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~  347 (470)
                      ++.+..+...+...+.+++++|  ++++|+|+++.++.++.++++.+++++..|.+++++|+||.+++++..+.+.+++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~  328 (455)
T COG0534         251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL  328 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999  99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcchhHHHHHHHHHHHhHHHH
Q 012113          348 TEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYLIGLPCA  427 (470)
Q Consensus       348 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~  427 (470)
                      .++...++.++++++++.++|++|+++.+.+..++++..+..++++++.+..+++||.||+|.+++.++.+.|.+.+|+.
T Consensus       329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~  408 (455)
T COG0534         329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA  408 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhccchhhh
Q 012113          428 VYLAFVFQFGAKGLWMGIICGSGLQAFVLLVITLRTNWEQEV  469 (470)
Q Consensus       428 ~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  469 (470)
                      +++.... +|..|+|++...++.++.+...++++|++|++..
T Consensus       409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (455)
T COG0534         409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKA  449 (455)
T ss_pred             HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            9997664 8999999999999999999999999999998763

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query470
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 6e-21
4huk_A459 Mate Transporter Norm-ng In Complex With Tpp And Mo 5e-09
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 98.6 bits (244), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 103/445 (23%), Positives = 189/445 (42%), Gaps = 17/445 (3%)
Query: 35  ELKRQMQLAGPLVLVSFLQYSFQMISVMFVGHLGDLSLSSASMATSFAGVTGFSYMLGMG 94
           E    ++LA P+++ S  Q     +  +  G +  + +++ S+A S   +    + +G+ 
Sbjct: 10  EASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASI-WLPSILFGVGLL 68
Query: 95  SAVETFCGQAFGAKQYRMMGVHMLRAMLVLSLSSIPIAVLWACTGKIFTTLHQDPEISFH 154
            A+     Q  GA +   +   + + +++  L S+PI  +   T  I   +  +  ++  
Sbjct: 69  MALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATK 128
Query: 155 AGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLMLTTGISTLVHVLSCWTLIFG-FG-- 211
              Y   +I ++  Y L Q    F    +   P M+   I  L+++   W  ++G FG  
Sbjct: 129 TVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAP 188
Query: 212 -FGNKGAALSNAISYWTNVIILAIYIKFSPKCE--KTWTGFSKEALENLRSFLGLGIPSA 268
             G  G  ++ AI YW  +++L  YI  S +    K +  F K   + L     LG P A
Sbjct: 189 ELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVA 248
Query: 269 LMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELG 328
             +  E + +  + L+    P      +   ++LN  S+VF  P   G+AVS RV ++LG
Sbjct: 249 AALFFEVTLFAVVALLVA--PLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLG 306
Query: 329 AGKPYAARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALS 388
                 A +A  + ++  L    + + + V  R     +Y+ +  V+     ++   A+ 
Sbjct: 307 EQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIY 366
Query: 389 NFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYLIGLPCAVYLAFVF-----QFGAKGLWM 443
             MD +Q V +G  RG        +    +Y+++GLP    L           GAKG W+
Sbjct: 367 QCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWL 426
Query: 444 GIICGSGLQAFVLLVITLRTNWEQE 468
           G I G    A   L++  R  W Q+
Sbjct: 427 GFIIGLSAAA---LMLGQRLYWLQK 448
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody Length = 459 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query470
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 1e-104
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  316 bits (813), Expect = e-104
 Identities = 100/435 (22%), Positives = 186/435 (42%), Gaps = 14/435 (3%)

Query: 35  ELKRQMQLAGPLVLVSFLQYSFQMISVMFVGHLGDLSLSSASMATSFAGVTGFSYMLGMG 94
           E    ++LA P+++ S  Q     +  +  G +  + +++ S+A S   +    + +G+ 
Sbjct: 10  EASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIW-LPSILFGVGLL 68

Query: 95  SAVETFCGQAFGAKQYRMMGVHMLRAMLVLSLSSIPIAVLWACTGKIFTTLHQDPEISFH 154
            A+     Q  GA +   +   + + +++  L S+PI  +   T  I   +  +  ++  
Sbjct: 69  MALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATK 128

Query: 155 AGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLMLTTGISTLVHVLSCWTLIFG-FGF- 212
              Y   +I ++  Y L Q    F    +   P M+   I  L+++   W  ++G FG  
Sbjct: 129 TVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAP 188

Query: 213 --GNKGAALSNAISYWTNVIILAIYIKFSPKCE--KTWTGFSKEALENLRSFLGLGIPSA 268
             G  G  ++ AI YW  +++L  YI  S +    K +  F K   + L     LG P A
Sbjct: 189 ELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVA 248

Query: 269 LMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELG 328
             +  E + +  + L+   L +  +  +   ++LN  S+VF  P   G+AVS RV ++LG
Sbjct: 249 AALFFEVTLFAVVALLVAPLGSTVV--AAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLG 306

Query: 329 AGKPYAARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALS 388
                 A +A  + ++  L    + + + V  R     +Y+ +  V+     ++   A+ 
Sbjct: 307 EQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIY 366

Query: 389 NFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYLIGLPCAVYLAFV-----FQFGAKGLWM 443
             MD +Q V +G  RG        +    +Y+++GLP    L           GAKG W+
Sbjct: 367 QCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWL 426

Query: 444 GIICGSGLQAFVLLV 458
           G I G    A +L  
Sbjct: 427 GFIIGLSAAALMLGQ 441

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query470
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.84
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 86.98
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 83.34
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=5.9e-50  Score=395.65  Aligned_cols=433  Identities=23%  Similarity=0.370  Sum_probs=399.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCcc
Q 012113           31 GMIVELKRQMQLAGPLVLVSFLQYSFQMISVMFVGHLGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQY  110 (470)
Q Consensus        31 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~  110 (470)
                      ..++..|++++.++|.+++++...+.+.+|+.+++|+|++++|+++++.++..+. ..+..|++.+..+.++|+.|++|+
T Consensus         6 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~~   84 (460)
T 3mkt_A            6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGRQ   84 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCh
Confidence            4678899999999999999999999999999999999999999999999998876 778899999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChhHHHH
Q 012113          111 RMMGVHMLRAMLVLSLSSIPIAVLWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLML  190 (470)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  190 (470)
                      ++.++.+++++.+..+.+++..++..+.+++..+++.+++..+.+..|+++.+++.++..+.....+.+|+.||++.++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  164 (460)
T 3mkt_A           85 HKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMV  164 (460)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            99999999999999999998777777888888888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhh-c---CCCcchhHHHHHHHHHHHHHHHHHHHHhCccccc-c-cCCCCHHHHHHHHHHHHHH
Q 012113          191 TTGISTLVHVLSCWTLIFG-F---GFGNKGAALSNAISYWTNVIILAIYIKFSPKCEK-T-WTGFSKEALENLRSFLGLG  264 (470)
Q Consensus       191 ~~~~~~~~~i~~~~~li~~-~---~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~  264 (470)
                      .++++.++|++++++++.. +   ++|+.|+++++.+++.+..++..++.+++++.+. + ++++.+.+++..|+++++|
T Consensus       165 ~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  244 (460)
T 3mkt_A          165 IGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLG  244 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHh
Confidence            9999999999999999985 3   6899999999999999999998888876543221 1 1222234477899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012113          265 IPSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPYAARLAVQIVII  344 (470)
Q Consensus       265 ~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~s~~~~~~~~~~~~~~~~~~~~  344 (470)
                      .|..++++...+...+++.++++++  ++++|+|+++.++.++..++..+++++..|.+++++|++|.++.++..+++.+
T Consensus       245 ~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~  322 (460)
T 3mkt_A          245 FPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLM  322 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999996  89999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcchhHHHHHHHHHHHhH
Q 012113          345 LALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYLIGL  424 (470)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i  424 (470)
                      +...++++.++++.++++++.++|.+|+++.+.+.+++++++++.++.+++.+..+++++.||+|.+++.++.+.|++++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i  402 (460)
T 3mkt_A          323 TGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGL  402 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988899999999999999999999999999999999999999999999989999


Q ss_pred             HHHHHHHHH----hc-CCCchhHHHHHHHHHHHHHHHHHHHHhccch
Q 012113          425 PCAVYLAFV----FQ-FGAKGLWMGIICGSGLQAFVLLVITLRTNWE  466 (470)
Q Consensus       425 ~~~~~l~~~----~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~  466 (470)
                      |+++++...    ++ +|+.|+|+++.+++++..++..++++|+.++
T Consensus       403 ~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~~~  449 (460)
T 3mkt_A          403 PTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQKQ  449 (460)
T ss_dssp             HHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSCCS
T ss_pred             HHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999655    45 8999999999999999999888887775443
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00